Query 036560
Match_columns 420
No_of_seqs 223 out of 470
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 04:40:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036560.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036560hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wfda_ a.7.14.1 (A:) Hypothet 67.3 6.1 0.00044 29.4 6.3 70 273-358 12-81 (93)
2 d1wr0a1 a.7.14.1 (A:5-81) Vacu 67.1 8.3 0.0006 27.5 6.8 66 275-356 10-76 (77)
3 d2hr2a1 a.118.8.8 (A:2-157) Hy 42.1 66 0.0048 24.4 10.4 32 277-311 101-132 (156)
4 d2crba1 a.7.16.1 (A:8-90) Nucl 39.9 8.2 0.0006 28.3 2.6 34 279-315 11-44 (83)
5 d1nzna_ a.118.8.1 (A:) Mitocho 36.6 76 0.0055 23.5 9.5 83 208-307 13-100 (122)
6 d1tjca_ a.118.8.1 (A:) Prolyl 35.3 32 0.0023 24.3 5.6 53 238-308 23-75 (95)
7 d2hr2a1 a.118.8.8 (A:2-157) Hy 35.2 17 0.0013 28.1 4.3 62 237-311 26-87 (156)
8 d1qqea_ a.118.8.1 (A:) Vesicul 23.5 1.4E+02 0.01 24.7 8.8 31 277-310 78-108 (290)
9 d1slma1 a.20.1.2 (A:16-80) Str 20.5 47 0.0034 22.7 3.7 34 154-205 22-55 (65)
10 d1elra_ a.118.8.1 (A:) Hop {Hu 20.0 1.5E+02 0.011 21.4 8.6 29 275-306 78-106 (128)
No 1
>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=67.34 E-value=6.1 Score=29.42 Aligned_cols=70 Identities=20% Similarity=0.201 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCchhhhHHHHHhHHhHHHHhhhh
Q 036560 273 QAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQM 352 (420)
Q Consensus 273 ~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~~~p~~~~p~~~~~~k~l~~~i~~~~~~k~r~ 352 (420)
..+|+.....|..+++ .++|-+|+-.|+.|.++|-.+.+. .+....-+.+.++|.+=+.|++..
T Consensus 12 ~~~A~~l~~~Av~~D~---~g~y~eA~~~Y~~aie~l~~~~~~-------------e~~~~~k~~l~~k~~eYl~RAE~L 75 (93)
T d1wfda_ 12 STAAVAVLKRAVELDA---ESRYQQALVCYQEGIDMLLQVLKG-------------TKESSKRCVLRTKISGYMDRAENI 75 (93)
T ss_dssp HHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHT-------------CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhc-------------cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3678889999999999 999999999999999999877542 112222345677777777777766
Q ss_pred cCcccc
Q 036560 353 YGYLLE 358 (420)
Q Consensus 353 N~~IY~ 358 (420)
..+|-.
T Consensus 76 K~~l~~ 81 (93)
T d1wfda_ 76 KKYLDQ 81 (93)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 2
>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}
Probab=67.10 E-value=8.3 Score=27.50 Aligned_cols=66 Identities=17% Similarity=0.085 Sum_probs=49.0
Q ss_pred HHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCchhhh-HHHHHhHHhHHHHhhhhc
Q 036560 275 KAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAM-KHLHQTIPEVASRKSQMY 353 (420)
Q Consensus 275 ~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~~~p~~~~p~~~~~~-k~l~~~i~~~~~~k~r~N 353 (420)
+|+.....|..+++ .++|-+|+.+|..|.+++..+.+.. +.-... +.+.+++.+=+.|++...
T Consensus 10 ~A~~l~~~Av~~D~---~~~y~~A~~~Y~~a~~~l~~~l~~e-------------~~~~~~k~~l~~k~~~Yl~RAE~LK 73 (77)
T d1wr0a1 10 KAIDLASKAAQEDK---AGNYEEALQLYQHAVQYFLHVVKYE-------------AQGDKAKQSIRAKCTEYLDRAEKLK 73 (77)
T ss_dssp HHHHHHHHHHHHHH---TTCCSSHHHHHHHHHHHHHHHHHHS-------------CCTGGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHHhcc-------------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778888999999 9999999999999999998876531 011112 356778888888887766
Q ss_pred Ccc
Q 036560 354 GYL 356 (420)
Q Consensus 354 ~~I 356 (420)
.+|
T Consensus 74 ~~l 76 (77)
T d1wr0a1 74 EYL 76 (77)
T ss_dssp TTC
T ss_pred HHh
Confidence 554
No 3
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}
Probab=42.12 E-value=66 Score=24.39 Aligned_cols=32 Identities=28% Similarity=0.294 Sum_probs=24.8
Q ss_pred HHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHH
Q 036560 277 AAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAE 311 (420)
Q Consensus 277 ~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~e 311 (420)
.+|+..|..+.+ -+++-+|+..|+.|.++..+
T Consensus 101 ~a~~~~g~~~~~---lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 101 SAVYSRALALDG---LGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHH---HHHHHHHHHHHHHHHHhhHH
Confidence 357777877777 77888888888888887654
No 4
>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=39.85 E-value=8.2 Score=28.28 Aligned_cols=34 Identities=21% Similarity=0.092 Sum_probs=28.7
Q ss_pred HHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 036560 279 YYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKA 315 (420)
Q Consensus 279 ~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~ 315 (420)
|-+.|.-+.. ..+|-+||.|.+.|.+++.+|.++
T Consensus 11 ~~RrAer~l~---~~rydeAIech~kA~~yl~eA~kl 44 (83)
T d2crba1 11 QSRRADRLLA---AGKYEEAISCHRKATTYLSEAMKL 44 (83)
T ss_dssp HHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHHhC
Confidence 4455666777 889999999999999999999874
No 5
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.59 E-value=76 Score=23.48 Aligned_cols=83 Identities=8% Similarity=-0.156 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhhhhcccchhHHHHHHHHH-----HHHHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHH
Q 036560 208 QALGQGTEIQLGLAVDCQKATLSVKRRLACEL-----LIYYSQAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYH 282 (420)
Q Consensus 208 lmLAQAQE~~~~kAi~~~K~k~sliAkLA~q~-----~~~Y~~A~~~l~~~~~~~~~~~k~~~~v~~K~~~f~A~A~y~~ 282 (420)
--+.+|.+ .|++|+..+-....+.-.+|.=. ..-|++|...+...--.+ ..--++. ++|..
T Consensus 13 ~~l~~Ae~-~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~------~~~~~~~-------~~~~L 78 (122)
T d1nzna_ 13 EDLLKFEK-KFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG------SKEEQRD-------YVFYL 78 (122)
T ss_dssp HHHHHHHH-HHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS------CHHHHHH-------HHHHH
T ss_pred HHHHHHHH-HHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc------CCchHHH-------HHHHH
Confidence 35677777 55788776423344444444322 233455555554321000 0011122 34444
Q ss_pred hccccCCCCCCchhHHHHHHHHHHH
Q 036560 283 GLILDKGNEPSCHVSAVCCFLAAEE 307 (420)
Q Consensus 283 ~~~l~e~~~~~~~GeaIa~L~~A~~ 307 (420)
|..... .++|.+|+.+++.|.+
T Consensus 79 g~~y~~---~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 79 AVGNYR---LKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHHHHH---TTCHHHHHHHHHHHHH
T ss_pred HHHHHH---HhhhHHHHHHHHHHHH
Confidence 444444 4567777777777665
No 6
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.32 E-value=32 Score=24.32 Aligned_cols=53 Identities=13% Similarity=0.054 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHH
Q 036560 238 ELLIYYSQAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEI 308 (420)
Q Consensus 238 q~~~~Y~~A~~~l~~~~~~~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~ 308 (420)
+...+|++|.+.....+.. +.. ++-++++.|..... .++|.+||..++.|.+.
T Consensus 23 ~A~~~~~~Al~~~~~~~~~--~~~-------------~~~~l~~Lg~~~~~---~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 23 HTELWMEQALRQLDEGEIS--TID-------------KVSVLDYLSYAVYQ---QGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHHHTTCCC--SSC-------------HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhcc--Ccc-------------HHHHHHHHhhHHHh---cCChHHHHHHHHHHHHh
Confidence 4456888888877654321 111 12234444444444 55677788777777663
No 7
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}
Probab=35.21 E-value=17 Score=28.13 Aligned_cols=62 Identities=10% Similarity=-0.118 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHH
Q 036560 237 CELLIYYSQAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAE 311 (420)
Q Consensus 237 ~q~~~~Y~~A~~~l~~~~~~~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~e 311 (420)
.+....|++|.+.....+-...+ +...+.|.+|.-.|..+.. -++|.+++.+++.|..++..
T Consensus 26 ~~Ai~~y~~Al~i~~~~~~~~~~----------~~~~~~a~~~~nlg~~~~~---lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 26 DEAAANCRRAMEISHTMPPEEAF----------DHAGFDAFCHAGLAEALAG---LRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSCC----------CHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhhhhhhc----------ccchhHHHHHHHHHHHHHH---cCccchhhHhhhhhhhcccc
Confidence 34557888888876665431111 1223456666666777666 67777888777777776554
No 8
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.49 E-value=1.4e+02 Score=24.67 Aligned_cols=31 Identities=19% Similarity=0.105 Sum_probs=17.2
Q ss_pred HHHHHHhccccCCCCCCchhHHHHHHHHHHHHHH
Q 036560 277 AAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILA 310 (420)
Q Consensus 277 ~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ 310 (420)
.+|.-.|..... .+++.+||..++.|.+.+.
T Consensus 78 ~~~~~~g~~y~~---~~~~~~A~~~~~~a~~~~~ 108 (290)
T d1qqea_ 78 NTYVEAYKCFKS---GGNSVNAVDSLENAIQIFT 108 (290)
T ss_dssp HHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---hCCcHHHHHHHHHhhHHhh
Confidence 344444555545 5566666666666665443
No 9
>d1slma1 a.20.1.2 (A:16-80) Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibroblast [TaxId: 9606]}
Probab=20.48 E-value=47 Score=22.68 Aligned_cols=34 Identities=18% Similarity=0.142 Sum_probs=24.5
Q ss_pred CCChhhHHHHHHHHHHHhhHHHHHHhhcccCCCCccccCCCCCCCHHHHHHH
Q 036560 154 VLSSDCKREAVDLLLKASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAI 205 (420)
Q Consensus 154 r~s~eglK~A~~~fq~AAG~F~~l~e~~l~~l~~~~~~~~~~DLs~~~L~aL 205 (420)
..+.+.+++|++.||+.+|+ ..+..|++++++.+
T Consensus 22 ~~~~~~l~~Ai~~~Q~f~~L------------------~~TG~lD~~T~~~M 55 (65)
T d1slma1 22 RKDSGPVVKKIREMQKFLGL------------------EVTGKLDSDTLEVM 55 (65)
T ss_dssp ---CHHHHHHHHHHHHHTTC------------------CCCSSCCHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHcCC------------------CccccCCHHHHHHH
Confidence 34566799999999998872 23668899988764
No 10
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.02 E-value=1.5e+02 Score=21.38 Aligned_cols=29 Identities=21% Similarity=0.017 Sum_probs=19.4
Q ss_pred HHHHHHHHhccccCCCCCCchhHHHHHHHHHH
Q 036560 275 KAAAYYYHGLILDKGNEPSCHVSAVCCFLAAE 306 (420)
Q Consensus 275 ~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~ 306 (420)
.|.+|+..|..... .+.|-+||..++.|.
T Consensus 78 ~a~~~~~lg~~~~~---~~~~~~A~~~~~kal 106 (128)
T d1elra_ 78 IAKAYARIGNSYFK---EEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHHHHHHHHHHHH---TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---hCCHHHHHHHHHHHH
Confidence 45677788877777 666666666665554
Done!