BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036563
(288 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|B Chain B, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|C Chain C, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|D Chain D, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
Length = 260
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 126 RIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTH 185
++ D+ ++L V RA G + + +V+GDAE F D T + +
Sbjct: 61 KVVAFDLTEDILKVA--RAFIEGNGHQQVEYVQGDAEQXPFTDERFHIVTCRIAAHHFPN 118
Query: 186 IEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDY 222
++EAYRVLK+GG+ L ++ S + F Y+Y
Sbjct: 119 PASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNY 155
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 131 DINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKAL 190
D + V A E+G +++ + +G AE+L F D + D T + + + + KA+
Sbjct: 50 DATKEXVEVASSFAQEKGV--ENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAV 107
Query: 191 AEAYRVLKRGGRFLCLELSHVDIPVFKELYDY 222
E RVLK+ GRFL ++ + PV E ++
Sbjct: 108 REVARVLKQDGRFLLVDHYAPEDPVLDEFVNH 139
>pdb|3EGE|A Chain A, Crystal Structure Of Putative Methyltransferase From
Antibiotic Biosynthesis Pathway (Yp_324569.1) From
Anabaena Variabilis Atcc 29413 At 2.40 A Resolution
Length = 261
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 156 WVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPV 215
W G AE L D ++DG I + +H+EK+ E R+++ G + L DI +
Sbjct: 80 WFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEXQRIIRDG----TIVLLTFDIRL 135
Query: 216 FKE--LYDYYSF 225
+ LYDY+ F
Sbjct: 136 AQRIWLYDYFPF 147
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 114 QDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDG 173
Q V+ + I DI+P L ++ + G K++ +++ + +L FEDS+ D
Sbjct: 51 QTVILAKNNPDAEITSIDISPESLEKARENTEKNGI--KNVKFLQANIFSLPFEDSSFDH 108
Query: 174 YTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSH 210
+ F + ++ E+AL +VLK GG +E H
Sbjct: 109 IFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDH 145
>pdb|2GS9|A Chain A, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
pdb|2GS9|B Chain B, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
Length = 211
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 62/155 (40%), Gaps = 29/155 (18%)
Query: 47 NVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVN 106
+ F+S+A+ Y+ G ++R + L P PG L+V GTG R L
Sbjct: 1 DPFASLAEAYEAWYGTPLGAYVIAEEERALKGLLP-PGESLLEVGAGTG-YWLRRLPYPQ 58
Query: 107 SIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCF 166
+ + + L VG++RA P+ + WV EAL F
Sbjct: 59 KVG--------------------VEPSEAXLAVGRRRA-----PEAT--WVRAWGEALPF 91
Query: 167 EDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGG 201
+ D + + V +E+ L EA RVL+ GG
Sbjct: 92 PGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGG 126
>pdb|1VLM|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase,
Possible Histamine N-Methyltransferase (Tm1293) From
Thermotoga Maritima At 2.20 A Resolution
pdb|1VLM|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase,
Possible Histamine N-Methyltransferase (Tm1293) From
Thermotoga Maritima At 2.20 A Resolution
Length = 219
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 152 KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGG 201
+ + ++G AE L +D + D I V E+AL EAYR+LK+GG
Sbjct: 84 RGVFVLKGTAENLPLKDESFDFALXVTTICFVDDPERALKEAYRILKKGG 133
>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
Length = 227
Score = 34.3 bits (77), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Query: 130 CDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIE-- 187
DI+ + + ++ A R + ++ ++ GDA L FED T D Y I I ++ H E
Sbjct: 66 VDISEDXIRKAREYAKSR---ESNVEFIVGDARKLSFEDKTFD-YVIF--IDSIVHFEPL 119
Query: 188 ---KALAEAYRVLKRGGRFL 204
+ E RVLK G+F+
Sbjct: 120 ELNQVFKEVRRVLKPSGKFI 139
>pdb|2YQZ|A Chain A, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8 Complexed With
S-adenosylmethionine
pdb|2YQZ|B Chain B, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8 Complexed With
S-adenosylmethionine
pdb|2YR0|A Chain A, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8
pdb|2YR0|B Chain B, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8
Length = 263
Score = 34.3 bits (77), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 151 DKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFL 204
D+ + V+ DA A+ D ++ G + V K LAEA RVLK GG L
Sbjct: 85 DRKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALL 138
>pdb|1YZH|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein,
Methyltransferase From Streptococcus Pneumoniae Tigr4
pdb|1YZH|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein,
Methyltransferase From Streptococcus Pneumoniae Tigr4
Length = 214
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 130 CDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAF 178
DI ++L+ + LE G P+ LLWV+G FED +D + F
Sbjct: 71 IDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 119
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 19/129 (14%)
Query: 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDI 132
D ++ L+ G + LDV G G A R+ + R+ I
Sbjct: 51 DEXIALLDVRSGDRVLDVGCGIGKPAVRLA------------------TARDVRVTGISI 92
Query: 133 NPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAE 192
+ +N RA G ++ + + DA L FED++ D + + +AL E
Sbjct: 93 SRPQVNQANARATAAGLANR-VTFSYADAXDLPFEDASFDAVWALESLHHXPDRGRALRE 151
Query: 193 AYRVLKRGG 201
RVL+ GG
Sbjct: 152 XARVLRPGG 160
>pdb|3ET1|A Chain A, Structure Of Pparalpha With 3-[5-Methoxy-1-(4-Methoxy-
Benzenesulfonyl)-1h-Indol-3-Yl]-Propionic Acid
pdb|3ET1|B Chain B, Structure Of Pparalpha With 3-[5-Methoxy-1-(4-Methoxy-
Benzenesulfonyl)-1h-Indol-3-Yl]-Propionic Acid
Length = 291
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 126 RIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRN 182
RIY + +N K R + G + +V D E LC + T+ +A GI+N
Sbjct: 32 RIYEAYLKNFNMNKVKARVILSGKASNNPPFVIHDMETLCMAEKTLVAKLVANGIQN 88
>pdb|2ZNN|A Chain A, Human Pprr Alpha Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp703
pdb|3VI8|A Chain A, Human Pprr Alpha Ligand Binding Domain In Complex With A
Synthetic Agonist Aphm13
Length = 273
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 126 RIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRN 182
RIY + +N K R + G + +V D E LC + T+ +A GI+N
Sbjct: 14 RIYEAYLKNFNMNKVKARVILSGKASNNPPFVIHDMETLCMAEKTLVAKLVANGIQN 70
>pdb|2NPA|A Chain A, The Crystal Structure Of The Human Pparaplpha Ligand
Binding Domain In Complex With A A-Hydroxyimino
Phenylpropanoic Acid
pdb|2NPA|C Chain C, The Crystal Structure Of The Human Pparaplpha Ligand
Binding Domain In Complex With A A-Hydroxyimino
Phenylpropanoic Acid
Length = 270
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 126 RIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRN 182
RIY + +N K R + G + +V D E LC + T+ +A GI+N
Sbjct: 11 RIYEAYLKNFNMNKVKARVILSGAASNNPPFVIHDMETLCMAEKTLVAKLVANGIQN 67
>pdb|2P54|A Chain A, A Crystal Structure Of Ppar Alpha Bound With Src1 Peptide
And Gw735
pdb|3FEI|A Chain A, Design And Biological Evaluation Of Novel, Balanced Dual
PparaG AGONISTS
Length = 267
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 126 RIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRN 182
RIY + +N K R + G + +V D E LC + T+ +A GI+N
Sbjct: 8 RIYEAYLKNFNMNKVKARVILSGKASNNPPFVIHDMETLCMAEKTLVAKLVANGIQN 64
>pdb|1KKQ|A Chain A, Crystal Structure Of The Human Ppar-Alpha Ligand-Binding
Domain In Complex With An Antagonist Gw6471 And A Smrt
Corepressor Motif
pdb|1KKQ|B Chain B, Crystal Structure Of The Human Ppar-Alpha Ligand-Binding
Domain In Complex With An Antagonist Gw6471 And A Smrt
Corepressor Motif
pdb|1KKQ|C Chain C, Crystal Structure Of The Human Ppar-Alpha Ligand-Binding
Domain In Complex With An Antagonist Gw6471 And A Smrt
Corepressor Motif
pdb|1KKQ|D Chain D, Crystal Structure Of The Human Ppar-Alpha Ligand-Binding
Domain In Complex With An Antagonist Gw6471 And A Smrt
Corepressor Motif
Length = 269
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 126 RIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRN 182
RIY + +N K R + G + +V D E LC + T+ +A GI+N
Sbjct: 10 RIYEAYLKNFNMNKVKARVILSGKASNNPPFVIHDMETLCMAEKTLVAKLVANGIQN 66
>pdb|3G8I|A Chain A, Aleglitazar, A New, Potent, And Balanced Ppar AlphaGAMMA
Agonist For The Treatment Of Type Ii Diabetes
Length = 270
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 126 RIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRN 182
RIY + +N K R + G + +V D E LC + T+ +A GI+N
Sbjct: 11 RIYEAYLKNFNMNKVKARVILSGKASNNPPFVIHDMETLCMAEKTLVAKLVANGIQN 67
>pdb|2U1A|A Chain A, Rna Binding Domain 2 Of Human U1a Protein, Nmr, 20
Structures
Length = 88
Score = 27.7 bits (60), Expect = 7.5, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 79 LNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLE 118
N FPG K + + G D+AF D N ++ A +D L+
Sbjct: 34 FNQFPGFKEVRLVPGRHDIAFVEFD--NEVQAGAARDALQ 71
>pdb|2REW|A Chain A, Crystal Structure Of Pparalpha Ligand Binding Domain With
Bms-631707
pdb|3KDT|A Chain A, Crystal Structure Of Peroxisome
Proliferator-Activatedecepto (Pparalpha) Complex With
N-3-((2-(4-Chlorophenyl)-5-Methyl-
Oxazol-4-Yl)methoxy)benzyl)-N-(Methoxycarbonyl)glycine
pdb|3KDT|B Chain B, Crystal Structure Of Peroxisome
Proliferator-Activatedecepto (Pparalpha) Complex With
N-3-((2-(4-Chlorophenyl)-5-Methyl-
Oxazol-4-Yl)methoxy)benzyl)-N-(Methoxycarbonyl)glycine
pdb|3KDU|A Chain A, Crystal Structure Of Peroxisome
Proliferator-Activatedecepto (Pparalpha) Complex With
N-3-((2-(4-Chlorophenyl)-5-Methyl-
Oxazol-4-Yl)methoxy)benzyl)-N-((4-
Methylphenoxy)carbonyl)gl
pdb|3KDU|B Chain B, Crystal Structure Of Peroxisome
Proliferator-Activatedecepto (Pparalpha) Complex With
N-3-((2-(4-Chlorophenyl)-5-Methyl-
Oxazol-4-Yl)methoxy)benzyl)-N-((4-
Methylphenoxy)carbonyl)gl
Length = 277
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 126 RIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRN 182
RIY + +N K R + G + +V D E LC + T+ +A GI+N
Sbjct: 18 RIYEAYLKNFNMNKVKARVILSGKASNNPPFVIHDMETLCMAEKTLVAKLVANGIQN 74
>pdb|3SP6|A Chain A, Structural Basis For Iloprost As A Dual PparalphaDELTA
AGONIST
Length = 285
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 126 RIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRN 182
RIY + +N K R + G + +V D E LC + T+ +A GI+N
Sbjct: 26 RIYEAYLKNFNMNKVKARVILSGKASNNPPFVIHDMETLCMAEKTLVAKLVANGIQN 82
>pdb|1K7L|A Chain A, The 2.5 Angstrom Resolution Crystal Structure Of The Human
Pparalpha Ligand Binding Domain Bound With Gw409544 And
A Co-Activator Peptide.
pdb|1K7L|C Chain C, The 2.5 Angstrom Resolution Crystal Structure Of The Human
Pparalpha Ligand Binding Domain Bound With Gw409544 And
A Co-Activator Peptide.
pdb|1K7L|E Chain E, The 2.5 Angstrom Resolution Crystal Structure Of The Human
Pparalpha Ligand Binding Domain Bound With Gw409544 And
A Co-Activator Peptide.
pdb|1K7L|G Chain G, The 2.5 Angstrom Resolution Crystal Structure Of The Human
Pparalpha Ligand Binding Domain Bound With Gw409544 And
A Co-Activator Peptide
Length = 288
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 126 RIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRN 182
RIY + +N K R + G + +V D E LC + T+ +A GI+N
Sbjct: 29 RIYEAYLKNFNMNKVKARVILSGKASNNPPFVIHDMETLCMAEKTLVAKLVANGIQN 85
>pdb|1I7G|A Chain A, Crystal Structure Of The Ligand Binding Domain From Human
Ppar-Alpha In Complex With The Agonist Az 242
Length = 287
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 126 RIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRN 182
RIY + +N K R + G + +V D E LC + T+ +A GI+N
Sbjct: 28 RIYEAYLKNFNMNKVKARVILSGKASNNPPFVIHDMETLCMAEKTLVAKLVANGIQN 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,288,964
Number of Sequences: 62578
Number of extensions: 344903
Number of successful extensions: 779
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 759
Number of HSP's gapped (non-prelim): 25
length of query: 288
length of database: 14,973,337
effective HSP length: 98
effective length of query: 190
effective length of database: 8,840,693
effective search space: 1679731670
effective search space used: 1679731670
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)