Query 036563
Match_columns 288
No_of_seqs 189 out of 2412
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 03:14:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036563.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036563hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1540 Ubiquinone biosynthesi 100.0 6.6E-44 1.4E-48 296.8 23.1 255 23-288 40-296 (296)
2 COG2226 UbiE Methylase involve 100.0 3.6E-40 7.7E-45 279.5 24.1 235 35-288 3-238 (238)
3 PF01209 Ubie_methyltran: ubiE 100.0 7.3E-40 1.6E-44 280.2 13.4 231 39-287 3-233 (233)
4 PLN02233 ubiquinone biosynthes 100.0 5.2E-31 1.1E-35 230.1 27.2 231 39-287 29-261 (261)
5 TIGR02752 MenG_heptapren 2-hep 100.0 8.4E-30 1.8E-34 218.9 25.6 230 40-287 2-231 (231)
6 PRK05785 hypothetical protein; 100.0 5.3E-30 1.2E-34 219.0 21.3 217 40-287 6-224 (226)
7 PRK00216 ubiE ubiquinone/menaq 100.0 5.4E-26 1.2E-30 195.7 25.2 233 39-288 7-239 (239)
8 TIGR01934 MenG_MenH_UbiE ubiqu 99.9 2.1E-24 4.6E-29 183.8 23.3 222 46-287 2-223 (223)
9 PLN02244 tocopherol O-methyltr 99.9 8.8E-22 1.9E-26 178.2 20.2 201 39-278 55-282 (340)
10 PLN02232 ubiquinone biosynthes 99.9 1.1E-20 2.3E-25 153.3 14.7 158 128-287 1-160 (160)
11 PLN02396 hexaprenyldihydroxybe 99.8 2.1E-19 4.7E-24 160.4 22.1 160 82-275 130-290 (322)
12 PLN02490 MPBQ/MSBQ methyltrans 99.8 9.5E-20 2.1E-24 163.2 18.2 181 46-276 77-258 (340)
13 PRK10258 biotin biosynthesis p 99.8 4E-19 8.6E-24 154.5 20.5 177 42-269 6-182 (251)
14 PTZ00098 phosphoethanolamine N 99.8 2E-19 4.3E-24 157.3 17.9 162 72-276 41-204 (263)
15 PRK11036 putative S-adenosyl-L 99.8 2.8E-19 6E-24 155.9 18.6 170 74-274 36-207 (255)
16 PRK15451 tRNA cmo(5)U34 methyl 99.8 7.9E-20 1.7E-24 158.5 11.9 172 82-273 55-229 (247)
17 PRK14103 trans-aconitate 2-met 99.8 2.5E-18 5.5E-23 149.9 19.5 165 73-273 19-183 (255)
18 TIGR00740 methyltransferase, p 99.8 7.5E-19 1.6E-23 151.7 12.7 181 82-286 52-238 (239)
19 PLN02336 phosphoethanolamine N 99.8 5.2E-18 1.1E-22 160.6 18.5 161 73-276 256-416 (475)
20 PF02353 CMAS: Mycolic acid cy 99.8 2.4E-17 5.3E-22 144.3 19.9 166 73-276 52-219 (273)
21 PRK08317 hypothetical protein; 99.8 3.7E-17 7.9E-22 140.4 20.3 166 69-275 5-177 (241)
22 PF13847 Methyltransf_31: Meth 99.8 9.4E-18 2E-22 134.9 15.5 108 83-209 3-112 (152)
23 TIGR00452 methyltransferase, p 99.8 3.3E-17 7.1E-22 145.8 19.7 163 73-275 111-274 (314)
24 PRK15068 tRNA mo(5)U34 methylt 99.8 1.3E-17 2.8E-22 149.7 16.9 164 73-276 112-276 (322)
25 PF13489 Methyltransf_23: Meth 99.8 5.6E-18 1.2E-22 136.7 13.3 150 72-271 10-160 (161)
26 PRK11873 arsM arsenite S-adeno 99.8 3.6E-17 7.8E-22 143.9 18.8 157 80-274 74-230 (272)
27 KOG4300 Predicted methyltransf 99.8 4.1E-17 8.8E-22 132.8 16.7 169 78-283 71-241 (252)
28 COG2227 UbiG 2-polyprenyl-3-me 99.8 7.4E-18 1.6E-22 141.2 12.5 160 82-277 58-218 (243)
29 COG2230 Cfa Cyclopropane fatty 99.8 3.2E-17 6.8E-22 141.9 16.2 161 72-276 61-225 (283)
30 PRK06202 hypothetical protein; 99.8 1.1E-16 2.4E-21 137.5 19.7 177 69-277 46-225 (232)
31 TIGR02072 BioC biotin biosynth 99.8 8.9E-17 1.9E-21 138.1 18.5 142 83-273 34-175 (240)
32 smart00828 PKS_MT Methyltransf 99.8 1.9E-17 4.2E-22 141.4 14.1 148 86-279 2-149 (224)
33 PF08241 Methyltransf_11: Meth 99.7 2.7E-17 5.8E-22 120.7 11.1 95 88-205 1-95 (95)
34 PRK01683 trans-aconitate 2-met 99.7 3.3E-16 7.1E-21 136.7 19.8 111 71-206 19-129 (258)
35 TIGR02021 BchM-ChlM magnesium 99.7 1.5E-16 3.3E-21 135.5 16.5 169 70-280 40-212 (219)
36 PF12847 Methyltransf_18: Meth 99.7 6.7E-17 1.5E-21 122.8 12.4 106 83-207 1-111 (112)
37 PRK11207 tellurite resistance 99.7 6.9E-17 1.5E-21 135.4 12.8 148 74-274 21-170 (197)
38 PRK00107 gidB 16S rRNA methylt 99.7 6.6E-16 1.4E-20 127.9 18.0 120 64-207 22-145 (187)
39 TIGR02716 C20_methyl_CrtF C-20 99.7 9.6E-16 2.1E-20 137.1 20.2 162 73-272 139-304 (306)
40 PRK05134 bifunctional 3-demeth 99.7 4.2E-15 9.1E-20 127.8 21.1 194 46-275 9-206 (233)
41 KOG1270 Methyltransferases [Co 99.7 1.3E-16 2.8E-21 134.6 10.5 154 84-273 90-248 (282)
42 PLN02585 magnesium protoporphy 99.7 1.5E-15 3.2E-20 135.4 17.6 196 40-276 88-301 (315)
43 TIGR00477 tehB tellurite resis 99.7 4.7E-16 1E-20 130.1 12.2 146 74-273 21-168 (195)
44 PF07021 MetW: Methionine bios 99.7 1E-15 2.3E-20 124.7 13.7 164 75-279 7-172 (193)
45 TIGR00138 gidB 16S rRNA methyl 99.7 1.1E-14 2.4E-19 120.3 18.6 100 83-206 42-141 (181)
46 TIGR01983 UbiG ubiquinone bios 99.7 1.9E-14 4E-19 122.9 20.3 159 83-276 45-205 (224)
47 PF08003 Methyltransf_9: Prote 99.6 3.4E-15 7.5E-20 129.5 14.6 165 73-276 105-269 (315)
48 PRK07580 Mg-protoporphyrin IX 99.6 2E-14 4.4E-19 123.1 18.3 155 82-278 62-218 (230)
49 PRK08287 cobalt-precorrin-6Y C 99.6 3.9E-14 8.5E-19 117.7 18.6 141 69-275 17-157 (187)
50 TIGR00537 hemK_rel_arch HemK-r 99.6 4.6E-14 1E-18 116.5 18.3 142 77-284 13-175 (179)
51 TIGR03438 probable methyltrans 99.6 3.9E-14 8.4E-19 126.3 18.7 122 67-207 49-177 (301)
52 PRK06922 hypothetical protein; 99.6 1E-14 2.2E-19 138.8 15.5 113 79-211 414-541 (677)
53 TIGR02081 metW methionine bios 99.6 3.1E-14 6.7E-19 119.1 16.0 160 75-275 7-168 (194)
54 PF05401 NodS: Nodulation prot 99.6 6.3E-14 1.4E-18 114.6 16.9 146 75-278 35-183 (201)
55 PLN02336 phosphoethanolamine N 99.6 9.3E-15 2E-19 138.4 13.4 153 73-275 27-183 (475)
56 COG4106 Tam Trans-aconitate me 99.6 7.7E-15 1.7E-19 120.5 10.9 111 73-208 20-130 (257)
57 PF08242 Methyltransf_12: Meth 99.6 4.7E-16 1E-20 115.7 3.4 97 88-203 1-99 (99)
58 PRK12335 tellurite resistance 99.6 1.1E-14 2.3E-19 129.2 12.4 102 83-207 120-223 (287)
59 COG4976 Predicted methyltransf 99.6 3.7E-15 8E-20 123.2 8.4 191 31-275 73-266 (287)
60 PRK04266 fibrillarin; Provisio 99.6 8E-14 1.7E-18 118.9 16.9 104 78-205 67-174 (226)
61 PRK00377 cbiT cobalt-precorrin 99.6 2.1E-13 4.5E-18 114.4 18.8 113 73-205 30-143 (198)
62 PF13649 Methyltransf_25: Meth 99.6 5.6E-15 1.2E-19 110.4 8.1 98 87-201 1-101 (101)
63 PRK11705 cyclopropane fatty ac 99.6 1.1E-13 2.4E-18 127.0 17.4 113 73-211 157-271 (383)
64 PRK00121 trmB tRNA (guanine-N( 99.6 4E-14 8.8E-19 119.1 13.0 106 83-207 40-156 (202)
65 TIGR02469 CbiT precorrin-6Y C5 99.6 1.1E-13 2.5E-18 106.6 14.2 114 71-206 7-121 (124)
66 PRK15001 SAM-dependent 23S rib 99.6 1.2E-14 2.6E-19 132.3 9.4 185 3-207 147-340 (378)
67 PRK13944 protein-L-isoaspartat 99.6 1.1E-13 2.3E-18 116.8 14.4 112 72-206 61-172 (205)
68 PF03848 TehB: Tellurite resis 99.6 1.1E-13 2.3E-18 114.3 13.8 111 75-208 22-134 (192)
69 PRK14968 putative methyltransf 99.5 5.8E-13 1.3E-17 110.3 17.9 148 77-286 17-187 (188)
70 PF05175 MTS: Methyltransferas 99.5 1.7E-13 3.6E-18 112.2 14.1 117 74-210 22-143 (170)
71 TIGR03534 RF_mod_PrmC protein- 99.5 5.5E-13 1.2E-17 115.7 18.0 143 73-279 78-246 (251)
72 COG2813 RsmC 16S RNA G1207 met 99.5 8.4E-13 1.8E-17 114.9 17.9 183 5-208 80-267 (300)
73 PLN03075 nicotianamine synthas 99.5 1.1E-12 2.3E-17 115.1 18.5 110 79-206 119-232 (296)
74 COG2242 CobL Precorrin-6B meth 99.5 1.6E-12 3.4E-17 105.5 18.0 115 69-206 20-134 (187)
75 PF12147 Methyltransf_20: Puta 99.5 1.1E-12 2.3E-17 112.9 17.4 174 80-287 132-311 (311)
76 PRK14966 unknown domain/N5-glu 99.5 1.6E-12 3.5E-17 118.7 19.6 142 83-287 251-418 (423)
77 TIGR00536 hemK_fam HemK family 99.5 1.3E-12 2.9E-17 115.6 18.5 141 85-287 116-282 (284)
78 PTZ00146 fibrillarin; Provisio 99.5 9.9E-13 2.1E-17 114.9 17.1 106 78-205 127-235 (293)
79 PRK13942 protein-L-isoaspartat 99.5 4.3E-13 9.3E-18 113.7 14.3 112 71-206 64-175 (212)
80 PRK09328 N5-glutamine S-adenos 99.5 2.2E-12 4.8E-17 113.5 19.2 153 71-286 96-274 (275)
81 TIGR03533 L3_gln_methyl protei 99.5 1.9E-12 4.2E-17 114.4 18.7 142 78-282 116-282 (284)
82 KOG2361 Predicted methyltransf 99.5 3.4E-13 7.3E-18 112.7 12.8 160 85-275 73-238 (264)
83 smart00138 MeTrc Methyltransfe 99.5 2.1E-13 4.6E-18 119.2 12.1 113 82-206 98-241 (264)
84 TIGR03587 Pse_Me-ase pseudamin 99.5 2.8E-13 6.2E-18 114.0 11.9 101 83-210 43-145 (204)
85 TIGR00080 pimt protein-L-isoas 99.5 8.7E-13 1.9E-17 112.1 14.4 110 73-206 67-176 (215)
86 TIGR01177 conserved hypothetic 99.5 7.7E-13 1.7E-17 119.5 14.7 115 71-206 170-293 (329)
87 TIGR00091 tRNA (guanine-N(7)-) 99.5 1.4E-12 3.1E-17 109.0 15.0 106 83-207 16-132 (194)
88 PRK11088 rrmA 23S rRNA methylt 99.5 7E-13 1.5E-17 116.7 13.6 107 74-209 77-183 (272)
89 PRK00517 prmA ribosomal protei 99.5 1.7E-12 3.7E-17 112.8 15.7 130 82-284 118-247 (250)
90 PRK09489 rsmC 16S ribosomal RN 99.5 1.5E-12 3.2E-17 117.7 14.4 118 72-211 185-307 (342)
91 PF05891 Methyltransf_PK: AdoM 99.4 4.5E-12 9.8E-17 105.5 15.3 196 42-284 6-214 (218)
92 PRK11805 N5-glutamine S-adenos 99.4 8.3E-12 1.8E-16 111.4 18.2 102 85-205 135-261 (307)
93 PRK14967 putative methyltransf 99.4 1.1E-11 2.4E-16 105.9 18.2 111 78-210 31-162 (223)
94 PRK07402 precorrin-6B methylas 99.4 1.6E-11 3.4E-16 102.8 18.4 116 69-207 26-142 (196)
95 PRK14901 16S rRNA methyltransf 99.4 5.4E-12 1.2E-16 118.1 16.4 121 72-210 241-387 (434)
96 TIGR03840 TMPT_Se_Te thiopurin 99.4 2.8E-12 6E-17 108.6 13.0 110 82-210 33-155 (213)
97 COG4123 Predicted O-methyltran 99.4 4.1E-12 8.8E-17 108.4 14.0 113 76-206 37-169 (248)
98 COG2264 PrmA Ribosomal protein 99.4 4.4E-12 9.4E-17 111.0 14.2 136 83-284 162-297 (300)
99 PF13659 Methyltransf_26: Meth 99.4 1.5E-12 3.2E-17 99.6 10.0 104 84-206 1-114 (117)
100 TIGR00406 prmA ribosomal prote 99.4 4E-12 8.6E-17 112.7 13.9 103 82-208 158-260 (288)
101 PF06325 PrmA: Ribosomal prote 99.4 3.9E-12 8.5E-17 112.2 13.7 185 30-286 86-294 (295)
102 PRK14121 tRNA (guanine-N(7)-)- 99.4 4.3E-12 9.3E-17 115.3 14.1 148 42-208 71-236 (390)
103 PF00891 Methyltransf_2: O-met 99.4 7.8E-12 1.7E-16 108.0 14.6 110 73-211 90-203 (241)
104 COG2519 GCD14 tRNA(1-methylade 99.4 8.8E-12 1.9E-16 105.6 13.9 110 73-205 84-193 (256)
105 KOG1271 Methyltransferases [Ge 99.4 1.6E-11 3.4E-16 98.5 14.4 128 86-274 70-205 (227)
106 PRK01544 bifunctional N5-gluta 99.4 1.7E-11 3.7E-16 116.4 17.2 140 84-285 139-304 (506)
107 PRK00312 pcm protein-L-isoaspa 99.4 1.2E-11 2.6E-16 104.8 14.5 108 72-206 67-174 (212)
108 PRK11188 rrmJ 23S rRNA methylt 99.4 1.7E-11 3.6E-16 103.6 15.2 103 81-212 49-170 (209)
109 COG2890 HemK Methylase of poly 99.4 7.8E-11 1.7E-15 103.8 19.5 138 86-287 113-276 (280)
110 PF05148 Methyltransf_8: Hypot 99.4 3.6E-11 7.8E-16 99.2 15.9 136 73-287 61-197 (219)
111 PF08704 GCD14: tRNA methyltra 99.4 2.2E-11 4.7E-16 104.7 14.4 111 73-205 30-144 (247)
112 PRK13255 thiopurine S-methyltr 99.3 2.2E-11 4.8E-16 103.5 13.1 110 80-208 34-156 (218)
113 PRK10901 16S rRNA methyltransf 99.3 7.5E-11 1.6E-15 110.2 17.2 119 73-211 234-376 (427)
114 PF01135 PCMT: Protein-L-isoas 99.3 1.4E-11 3.1E-16 103.6 11.1 110 73-206 62-171 (209)
115 KOG3010 Methyltransferase [Gen 99.3 4.4E-12 9.6E-17 106.1 7.7 130 49-205 5-135 (261)
116 TIGR03704 PrmC_rel_meth putati 99.3 2.3E-10 5.1E-15 99.3 17.9 101 84-206 87-215 (251)
117 PHA03411 putative methyltransf 99.3 6.5E-11 1.4E-15 102.5 13.8 126 82-268 63-208 (279)
118 KOG2940 Predicted methyltransf 99.3 9.9E-12 2.2E-16 103.1 8.2 154 85-274 74-227 (325)
119 PRK14903 16S rRNA methyltransf 99.3 8.4E-11 1.8E-15 109.7 15.0 121 73-211 227-370 (431)
120 PRK14902 16S rRNA methyltransf 99.3 1.8E-10 3.9E-15 108.2 16.9 119 73-210 240-382 (444)
121 PF05219 DREV: DREV methyltran 99.3 2.1E-11 4.5E-16 103.9 9.5 94 83-206 94-187 (265)
122 TIGR00563 rsmB ribosomal RNA s 99.3 7.3E-11 1.6E-15 110.3 14.1 122 72-211 227-372 (426)
123 PRK13943 protein-L-isoaspartat 99.3 6.2E-11 1.3E-15 106.1 12.8 110 73-206 70-179 (322)
124 TIGR00446 nop2p NOL1/NOP2/sun 99.3 7.4E-11 1.6E-15 103.3 13.0 118 76-211 64-203 (264)
125 COG2518 Pcm Protein-L-isoaspar 99.3 1E-10 2.2E-15 97.1 12.7 109 73-208 62-170 (209)
126 PRK14904 16S rRNA methyltransf 99.3 2.2E-10 4.9E-15 107.5 16.6 119 74-211 241-381 (445)
127 cd02440 AdoMet_MTases S-adenos 99.2 1.1E-10 2.3E-15 85.7 11.2 101 86-206 1-103 (107)
128 TIGR00438 rrmJ cell division p 99.2 4.5E-10 9.7E-15 93.4 15.4 99 80-207 29-146 (188)
129 PF06080 DUF938: Protein of un 99.2 4.9E-10 1.1E-14 92.9 15.2 170 74-281 17-199 (204)
130 PRK04457 spermidine synthase; 99.2 3E-10 6.5E-15 99.2 13.3 109 82-208 65-178 (262)
131 PF03291 Pox_MCEL: mRNA cappin 99.2 1.3E-10 2.8E-15 104.5 10.9 173 83-276 62-269 (331)
132 KOG1541 Predicted protein carb 99.2 2.5E-10 5.5E-15 94.3 11.1 129 50-206 17-159 (270)
133 PLN02781 Probable caffeoyl-CoA 99.2 2.8E-10 6E-15 97.9 11.8 104 82-205 67-176 (234)
134 smart00650 rADc Ribosomal RNA 99.2 5.1E-10 1.1E-14 91.5 12.5 107 73-205 3-111 (169)
135 PLN02476 O-methyltransferase 99.2 1.3E-09 2.8E-14 95.2 15.4 105 81-205 116-226 (278)
136 KOG1975 mRNA cap methyltransfe 99.2 8.9E-10 1.9E-14 95.9 14.0 173 82-276 116-319 (389)
137 PRK00811 spermidine synthase; 99.2 3.9E-10 8.4E-15 99.7 11.8 108 82-206 75-190 (283)
138 PRK01581 speE spermidine synth 99.2 1.7E-09 3.7E-14 97.2 16.0 108 82-206 149-267 (374)
139 KOG3045 Predicted RNA methylas 99.1 1.8E-09 4E-14 91.2 14.4 134 73-287 169-303 (325)
140 PF01596 Methyltransf_3: O-met 99.1 2.2E-09 4.8E-14 90.2 14.0 113 70-205 35-153 (205)
141 PF05724 TPMT: Thiopurine S-me 99.1 8.1E-10 1.8E-14 93.8 11.5 146 78-274 32-190 (218)
142 PRK13168 rumA 23S rRNA m(5)U19 99.1 1.8E-09 3.8E-14 101.5 14.8 112 69-205 283-398 (443)
143 PRK15128 23S rRNA m(5)C1962 me 99.1 3.3E-09 7.1E-14 97.8 15.7 110 83-210 220-342 (396)
144 PRK03612 spermidine synthase; 99.1 3.2E-09 6.9E-14 101.5 15.4 108 82-206 296-414 (521)
145 PRK11783 rlmL 23S rRNA m(2)G24 99.1 1.9E-09 4E-14 106.6 14.2 106 83-206 538-655 (702)
146 COG2521 Predicted archaeal met 99.1 6.7E-10 1.5E-14 92.6 9.3 153 77-282 128-285 (287)
147 PLN02672 methionine S-methyltr 99.1 5.3E-09 1.1E-13 105.9 16.2 109 84-210 119-280 (1082)
148 PF02390 Methyltransf_4: Putat 99.1 7.8E-09 1.7E-13 86.3 14.7 104 86-208 20-134 (195)
149 COG4122 Predicted O-methyltran 99.0 2.6E-09 5.6E-14 89.9 11.7 106 80-205 56-164 (219)
150 TIGR03439 methyl_EasF probable 99.0 3.6E-08 7.9E-13 88.1 19.4 125 67-206 62-196 (319)
151 PRK13256 thiopurine S-methyltr 99.0 5.8E-09 1.3E-13 88.6 13.5 112 79-209 39-165 (226)
152 TIGR00417 speE spermidine synt 99.0 5.2E-09 1.1E-13 92.0 13.0 107 83-206 72-185 (270)
153 PLN02366 spermidine synthase 99.0 4.2E-09 9.1E-14 93.9 12.4 108 82-206 90-205 (308)
154 PRK11727 23S rRNA mA1618 methy 99.0 1.6E-08 3.6E-13 90.3 15.8 83 83-183 114-202 (321)
155 KOG1499 Protein arginine N-met 99.0 5E-09 1.1E-13 92.7 11.0 116 69-204 46-164 (346)
156 KOG3191 Predicted N6-DNA-methy 99.0 5.9E-08 1.3E-12 78.1 15.5 133 84-278 44-197 (209)
157 PHA03412 putative methyltransf 99.0 5.2E-09 1.1E-13 88.8 10.0 97 84-202 50-158 (241)
158 PRK10909 rsmD 16S rRNA m(2)G96 99.0 1.6E-08 3.4E-13 84.7 12.8 104 82-206 52-158 (199)
159 PF01170 UPF0020: Putative RNA 98.9 3E-08 6.6E-13 81.7 14.2 129 67-204 12-148 (179)
160 PRK03522 rumB 23S rRNA methylu 98.9 2.3E-08 5.1E-13 89.8 14.6 107 75-205 165-272 (315)
161 COG0220 Predicted S-adenosylme 98.9 5.9E-08 1.3E-12 82.6 15.7 104 85-207 50-164 (227)
162 TIGR00479 rumA 23S rRNA (uraci 98.9 2.9E-08 6.2E-13 93.1 15.2 109 73-205 282-394 (431)
163 COG2263 Predicted RNA methylas 98.9 4.4E-08 9.6E-13 79.6 13.5 81 79-183 41-121 (198)
164 PF10294 Methyltransf_16: Puta 98.9 2.3E-08 5.1E-13 82.0 11.8 110 81-208 43-157 (173)
165 PLN02589 caffeoyl-CoA O-methyl 98.9 1E-08 2.3E-13 88.4 9.8 103 83-205 79-188 (247)
166 KOG1500 Protein arginine N-met 98.9 8.5E-08 1.9E-12 84.1 15.0 112 71-204 165-279 (517)
167 COG1041 Predicted DNA modifica 98.9 2.8E-08 6E-13 88.4 12.1 120 66-206 180-309 (347)
168 KOG2899 Predicted methyltransf 98.9 4.8E-08 1E-12 82.1 12.5 104 83-205 58-207 (288)
169 PRK14896 ksgA 16S ribosomal RN 98.9 2.2E-08 4.7E-13 87.5 10.6 90 68-182 14-103 (258)
170 PF02527 GidB: rRNA small subu 98.8 1.9E-07 4.1E-12 77.1 14.8 97 86-206 51-147 (184)
171 KOG3178 Hydroxyindole-O-methyl 98.8 4.3E-08 9.4E-13 86.9 11.4 152 85-276 179-332 (342)
172 KOG2904 Predicted methyltransf 98.8 1.2E-07 2.6E-12 81.0 13.4 120 69-206 131-284 (328)
173 PF05185 PRMT5: PRMT5 arginine 98.8 8E-08 1.7E-12 89.8 13.5 106 84-204 187-294 (448)
174 PF01739 CheR: CheR methyltran 98.8 2.1E-08 4.6E-13 83.6 8.7 116 83-206 31-174 (196)
175 COG3963 Phospholipid N-methylt 98.8 9E-08 2E-12 76.0 11.3 117 70-209 35-158 (194)
176 KOG2915 tRNA(1-methyladenosine 98.8 4.8E-07 1E-11 77.3 16.2 110 73-204 95-206 (314)
177 PTZ00338 dimethyladenosine tra 98.8 4.4E-08 9.5E-13 86.9 10.5 91 69-181 22-112 (294)
178 PRK00274 ksgA 16S ribosomal RN 98.8 3.3E-08 7.1E-13 87.0 9.6 88 69-180 28-115 (272)
179 COG1092 Predicted SAM-dependen 98.8 7.2E-08 1.6E-12 88.1 11.0 110 84-211 218-340 (393)
180 PRK10611 chemotaxis methyltran 98.7 3.2E-08 6.8E-13 87.2 8.2 114 84-206 116-261 (287)
181 TIGR00755 ksgA dimethyladenosi 98.7 1.4E-07 3.1E-12 82.1 12.2 88 69-181 15-105 (253)
182 PF07942 N2227: N2227-like pro 98.7 2.6E-06 5.6E-11 74.1 19.5 147 82-274 55-242 (270)
183 PRK11933 yebU rRNA (cytosine-C 98.7 1.8E-07 4E-12 87.8 13.3 118 76-211 104-246 (470)
184 COG1352 CheR Methylase of chem 98.7 2.5E-07 5.3E-12 80.6 13.1 111 84-206 97-240 (268)
185 PF10672 Methyltrans_SAM: S-ad 98.7 1.7E-07 3.8E-12 82.3 12.2 123 68-211 111-242 (286)
186 TIGR02085 meth_trns_rumB 23S r 98.7 3.2E-07 7E-12 84.3 14.5 105 77-205 227-332 (374)
187 PF09243 Rsm22: Mitochondrial 98.7 5.9E-07 1.3E-11 79.1 15.1 121 73-214 23-146 (274)
188 TIGR00095 RNA methyltransferas 98.7 4.1E-07 8.9E-12 75.7 12.9 103 83-205 49-157 (189)
189 PF03602 Cons_hypoth95: Conser 98.7 8E-08 1.7E-12 79.4 8.5 117 70-205 27-151 (183)
190 PF02475 Met_10: Met-10+ like- 98.7 2.5E-07 5.5E-12 77.3 11.0 106 73-203 93-198 (200)
191 PLN02823 spermine synthase 98.6 3.3E-07 7.1E-12 82.7 11.5 107 83-206 103-219 (336)
192 PF02384 N6_Mtase: N-6 DNA Met 98.6 6.4E-07 1.4E-11 80.3 13.3 154 43-206 4-182 (311)
193 PF01269 Fibrillarin: Fibrilla 98.6 2.1E-06 4.6E-11 71.9 14.6 107 78-206 68-177 (229)
194 COG0357 GidB Predicted S-adeno 98.6 5.4E-06 1.2E-10 69.8 17.1 115 68-205 47-166 (215)
195 KOG1661 Protein-L-isoaspartate 98.6 2.5E-07 5.5E-12 76.2 8.8 112 74-206 71-192 (237)
196 TIGR00478 tly hemolysin TlyA f 98.6 7.8E-07 1.7E-11 75.9 12.2 144 76-274 67-217 (228)
197 PF11968 DUF3321: Putative met 98.6 1.5E-06 3.2E-11 72.5 12.5 122 84-277 52-184 (219)
198 PRK01544 bifunctional N5-gluta 98.6 5.8E-07 1.3E-11 85.7 11.3 106 83-207 347-462 (506)
199 KOG1663 O-methyltransferase [S 98.5 3.1E-06 6.8E-11 70.9 13.7 110 73-205 66-181 (237)
200 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.5 8.2E-07 1.8E-11 76.8 10.5 147 83-274 56-239 (256)
201 PRK04338 N(2),N(2)-dimethylgua 98.5 1E-06 2.2E-11 81.0 11.6 100 84-206 58-157 (382)
202 COG0421 SpeE Spermidine syntha 98.5 1.3E-06 2.9E-11 76.7 11.8 107 80-206 74-189 (282)
203 COG0144 Sun tRNA and rRNA cyto 98.5 6.3E-06 1.4E-10 75.2 16.0 122 73-211 146-292 (355)
204 KOG0820 Ribosomal RNA adenine 98.4 1.7E-06 3.6E-11 74.1 10.1 88 71-180 46-133 (315)
205 COG0742 N6-adenine-specific me 98.4 4.1E-06 9E-11 68.6 11.8 119 69-206 27-153 (187)
206 PRK05031 tRNA (uracil-5-)-meth 98.4 4.4E-06 9.5E-11 76.5 13.3 106 73-205 197-318 (362)
207 TIGR02143 trmA_only tRNA (urac 98.4 2.7E-06 5.9E-11 77.6 11.8 107 72-205 187-309 (353)
208 PF04816 DUF633: Family of unk 98.4 1.4E-05 3.1E-10 67.1 15.2 136 87-286 1-138 (205)
209 PRK00050 16S rRNA m(4)C1402 me 98.4 9.1E-07 2E-11 78.2 8.1 89 72-180 8-100 (296)
210 COG0030 KsgA Dimethyladenosine 98.4 2E-06 4.4E-11 74.2 9.8 91 68-181 15-106 (259)
211 KOG1709 Guanidinoacetate methy 98.4 4.5E-06 9.8E-11 69.1 11.3 119 82-222 100-221 (271)
212 PF01564 Spermine_synth: Sperm 98.4 3.2E-06 6.8E-11 73.3 11.1 108 83-207 76-191 (246)
213 KOG3987 Uncharacterized conser 98.4 1.7E-07 3.7E-12 77.0 2.9 93 83-205 112-205 (288)
214 PF03059 NAS: Nicotianamine sy 98.4 1.4E-05 3.1E-10 69.7 15.0 106 84-206 121-229 (276)
215 PRK04148 hypothetical protein; 98.4 7.3E-06 1.6E-10 63.7 11.6 103 73-208 6-110 (134)
216 PF03141 Methyltransf_29: Puta 98.4 3E-07 6.6E-12 85.1 4.2 109 70-206 100-218 (506)
217 PF04672 Methyltransf_19: S-ad 98.3 7.7E-06 1.7E-10 70.8 11.9 127 69-213 53-196 (267)
218 PRK00536 speE spermidine synth 98.3 4.9E-06 1.1E-10 72.3 10.8 98 82-206 71-170 (262)
219 PF08123 DOT1: Histone methyla 98.3 3.5E-06 7.7E-11 70.7 9.6 123 65-205 24-156 (205)
220 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.3 1.1E-05 2.3E-10 71.4 12.1 120 73-210 75-222 (283)
221 COG0293 FtsJ 23S rRNA methylas 98.3 1.3E-05 2.8E-10 66.7 11.3 106 82-216 44-168 (205)
222 KOG1269 SAM-dependent methyltr 98.3 1.3E-06 2.8E-11 79.3 5.5 110 81-209 108-217 (364)
223 COG1889 NOP1 Fibrillarin-like 98.2 4.2E-05 9E-10 63.0 13.3 106 78-206 71-179 (231)
224 KOG1331 Predicted methyltransf 98.2 1.2E-06 2.6E-11 75.6 4.3 95 83-206 45-142 (293)
225 KOG3420 Predicted RNA methylas 98.2 2.4E-06 5.2E-11 66.4 5.5 83 78-181 43-125 (185)
226 PF01728 FtsJ: FtsJ-like methy 98.2 4.8E-06 1E-10 68.6 7.8 101 83-212 23-144 (181)
227 COG0500 SmtA SAM-dependent met 98.2 0.00016 3.5E-09 56.2 16.1 105 87-211 52-159 (257)
228 COG2520 Predicted methyltransf 98.2 2.3E-05 4.9E-10 70.4 11.3 112 74-210 181-292 (341)
229 COG0116 Predicted N6-adenine-s 98.1 0.00016 3.5E-09 65.6 16.1 135 70-205 178-342 (381)
230 PRK11783 rlmL 23S rRNA m(2)G24 98.1 4.3E-05 9.2E-10 75.9 13.5 130 72-206 178-346 (702)
231 PF00398 RrnaAD: Ribosomal RNA 98.1 3.6E-05 7.8E-10 67.4 11.1 105 68-198 15-122 (262)
232 COG2265 TrmA SAM-dependent met 98.1 6.6E-05 1.4E-09 70.0 13.3 113 69-205 279-394 (432)
233 KOG3201 Uncharacterized conser 98.1 3.4E-06 7.3E-11 66.8 3.6 106 83-205 29-138 (201)
234 TIGR00308 TRM1 tRNA(guanine-26 98.0 8.7E-05 1.9E-09 68.0 11.7 101 84-206 45-146 (374)
235 PF05958 tRNA_U5-meth_tr: tRNA 98.0 3.6E-05 7.7E-10 70.2 9.0 88 70-179 184-287 (352)
236 COG3897 Predicted methyltransf 98.0 5.2E-05 1.1E-09 62.1 8.8 101 80-205 76-176 (218)
237 PF09445 Methyltransf_15: RNA 98.0 1.9E-05 4.1E-10 63.7 6.1 76 86-181 2-80 (163)
238 COG4798 Predicted methyltransf 97.9 7.8E-05 1.7E-09 61.0 9.4 154 74-274 39-205 (238)
239 PF13578 Methyltransf_24: Meth 97.9 5.2E-06 1.1E-10 62.2 2.0 100 88-206 1-104 (106)
240 TIGR02987 met_A_Alw26 type II 97.9 0.00018 3.8E-09 69.3 12.3 88 83-181 31-123 (524)
241 KOG4589 Cell division protein 97.8 0.00027 5.9E-09 57.5 10.6 111 82-221 68-198 (232)
242 COG4262 Predicted spermidine s 97.8 0.00037 8.1E-09 62.3 12.4 106 84-206 290-406 (508)
243 PF13679 Methyltransf_32: Meth 97.8 0.00033 7.2E-09 55.3 10.8 103 82-204 24-128 (141)
244 COG4076 Predicted RNA methylas 97.8 0.00017 3.7E-09 58.7 8.8 97 85-204 34-132 (252)
245 KOG1122 tRNA and rRNA cytosine 97.8 0.00028 6.2E-09 64.2 11.1 115 78-211 236-375 (460)
246 PRK11760 putative 23S rRNA C24 97.7 0.0017 3.7E-08 58.3 15.3 87 82-200 210-296 (357)
247 PF05971 Methyltransf_10: Prot 97.7 0.0051 1.1E-07 54.5 18.1 83 84-184 103-191 (299)
248 COG1189 Predicted rRNA methyla 97.7 0.00082 1.8E-08 57.0 12.1 143 82-274 78-224 (245)
249 PF06962 rRNA_methylase: Putat 97.7 0.00053 1.2E-08 53.7 9.9 82 126-210 1-95 (140)
250 COG4301 Uncharacterized conser 97.7 0.0055 1.2E-07 52.2 16.3 123 67-206 65-192 (321)
251 TIGR00006 S-adenosyl-methyltra 97.6 0.00038 8.3E-09 61.8 9.2 90 71-180 8-102 (305)
252 COG2384 Predicted SAM-dependen 97.6 0.0016 3.5E-08 54.5 12.2 102 84-205 17-118 (226)
253 KOG2730 Methylase [General fun 97.6 0.00024 5.3E-09 59.3 7.1 98 84-201 95-196 (263)
254 TIGR01444 fkbM_fam methyltrans 97.6 0.00029 6.2E-09 55.4 7.4 59 86-163 1-59 (143)
255 KOG2187 tRNA uracil-5-methyltr 97.4 0.00027 5.8E-09 65.9 5.5 73 71-164 371-443 (534)
256 PF01861 DUF43: Protein of unk 97.4 0.043 9.4E-07 46.9 18.3 107 82-210 43-151 (243)
257 PLN02668 indole-3-acetate carb 97.4 0.015 3.2E-07 53.5 16.4 126 84-211 64-241 (386)
258 COG5459 Predicted rRNA methyla 97.3 0.0017 3.8E-08 57.9 9.0 123 73-213 103-231 (484)
259 PF03492 Methyltransf_7: SAM d 97.3 0.022 4.7E-07 51.7 16.5 181 81-274 14-253 (334)
260 KOG2352 Predicted spermine/spe 97.3 0.0018 4E-08 60.2 9.6 103 85-208 50-162 (482)
261 COG0286 HsdM Type I restrictio 97.3 0.0088 1.9E-07 57.0 14.5 150 43-206 144-325 (489)
262 KOG2798 Putative trehalase [Ca 97.2 0.013 2.9E-07 51.7 14.0 82 169-276 258-339 (369)
263 KOG1596 Fibrillarin and relate 97.2 0.0012 2.6E-08 55.9 7.4 107 77-206 150-260 (317)
264 COG4627 Uncharacterized protei 97.2 0.00015 3.3E-09 57.1 1.3 44 163-206 40-85 (185)
265 KOG1099 SAM-dependent methyltr 97.1 0.0015 3.3E-08 54.9 6.6 111 85-216 43-172 (294)
266 COG0275 Predicted S-adenosylme 97.0 0.0072 1.6E-07 53.1 9.9 90 71-179 11-105 (314)
267 PF04989 CmcI: Cephalosporin h 96.9 0.012 2.5E-07 49.3 10.2 106 84-206 33-146 (206)
268 PF01795 Methyltransf_5: MraW 96.9 0.0037 8E-08 55.6 7.7 88 72-179 9-102 (310)
269 KOG2198 tRNA cytosine-5-methyl 96.9 0.025 5.3E-07 51.1 12.6 126 71-211 138-300 (375)
270 PF03141 Methyltransf_29: Puta 96.9 0.0099 2.1E-07 55.7 10.2 94 85-207 367-467 (506)
271 KOG4058 Uncharacterized conser 96.8 0.013 2.8E-07 46.1 9.0 115 74-212 63-177 (199)
272 PRK10742 putative methyltransf 96.8 0.011 2.5E-07 50.8 9.4 92 73-183 76-177 (250)
273 COG1064 AdhP Zn-dependent alco 96.7 0.028 6E-07 50.7 11.3 98 79-209 162-261 (339)
274 PF07091 FmrO: Ribosomal RNA m 96.6 0.0082 1.8E-07 51.5 7.5 81 83-184 105-185 (251)
275 KOG3115 Methyltransferase-like 96.6 0.0074 1.6E-07 50.0 6.5 107 84-207 61-183 (249)
276 PF03514 GRAS: GRAS domain fam 96.5 0.53 1.1E-05 43.4 18.9 187 73-273 100-330 (374)
277 KOG2793 Putative N2,N2-dimethy 96.3 0.033 7.2E-07 48.0 9.3 104 83-206 86-198 (248)
278 KOG1562 Spermidine synthase [A 95.9 0.028 6E-07 49.3 7.0 110 82-208 120-237 (337)
279 PRK09424 pntA NAD(P) transhydr 95.9 0.095 2.1E-06 50.1 11.1 101 81-208 162-286 (509)
280 PF02636 Methyltransf_28: Puta 95.7 0.076 1.7E-06 46.1 9.1 54 84-146 19-72 (252)
281 PRK01747 mnmC bifunctional tRN 95.7 0.15 3.2E-06 50.7 12.2 117 83-205 57-204 (662)
282 PF02005 TRM: N2,N2-dimethylgu 95.6 0.082 1.8E-06 48.7 9.3 104 84-207 50-154 (377)
283 TIGR00027 mthyl_TIGR00027 meth 95.4 1.2 2.7E-05 38.8 15.6 154 85-272 83-248 (260)
284 KOG0024 Sorbitol dehydrogenase 95.4 0.23 4.9E-06 44.3 10.9 107 78-213 164-279 (354)
285 KOG0822 Protein kinase inhibit 95.3 0.16 3.5E-06 48.0 10.0 105 84-204 368-475 (649)
286 PF05711 TylF: Macrocin-O-meth 95.2 0.17 3.7E-06 43.8 9.4 115 82-210 73-215 (248)
287 COG1565 Uncharacterized conser 95.2 0.17 3.6E-06 45.9 9.3 64 75-147 69-132 (370)
288 COG1063 Tdh Threonine dehydrog 95.1 0.12 2.5E-06 47.3 8.4 103 82-212 167-274 (350)
289 KOG1501 Arginine N-methyltrans 94.6 0.073 1.6E-06 49.1 5.7 72 86-176 69-141 (636)
290 PF11599 AviRa: RRNA methyltra 94.6 0.12 2.6E-06 43.4 6.4 113 78-205 46-212 (246)
291 COG3129 Predicted SAM-dependen 94.4 0.2 4.4E-06 42.5 7.5 83 83-183 78-166 (292)
292 KOG2920 Predicted methyltransf 94.4 0.035 7.6E-07 48.4 3.1 103 82-205 115-232 (282)
293 PRK09880 L-idonate 5-dehydroge 94.4 0.29 6.2E-06 44.3 9.2 101 80-208 166-267 (343)
294 PF04445 SAM_MT: Putative SAM- 94.4 0.12 2.7E-06 44.1 6.2 91 73-182 63-163 (234)
295 PRK11524 putative methyltransf 93.8 0.23 5E-06 43.9 7.2 54 73-146 199-252 (284)
296 cd08283 FDH_like_1 Glutathione 93.8 0.88 1.9E-05 41.9 11.3 109 78-208 179-307 (386)
297 PF05430 Methyltransf_30: S-ad 93.7 0.27 5.8E-06 37.9 6.5 87 153-287 32-123 (124)
298 TIGR00561 pntA NAD(P) transhyd 93.7 0.27 5.9E-06 47.0 7.8 97 82-205 162-282 (511)
299 PF01555 N6_N4_Mtase: DNA meth 93.6 0.24 5.1E-06 41.6 6.7 50 73-142 182-231 (231)
300 PF06859 Bin3: Bicoid-interact 93.4 0.047 1E-06 40.8 1.8 36 170-205 1-42 (110)
301 PHA01634 hypothetical protein 93.4 0.51 1.1E-05 36.4 7.3 47 83-147 28-74 (156)
302 PRK13699 putative methylase; P 93.1 0.5 1.1E-05 40.4 7.8 51 155-205 3-70 (227)
303 PF02254 TrkA_N: TrkA-N domain 93.0 2.4 5.1E-05 31.6 10.8 86 92-205 4-94 (116)
304 KOG2539 Mitochondrial/chloropl 93.0 0.28 6E-06 45.8 6.3 114 81-212 198-320 (491)
305 COG3510 CmcI Cephalosporin hyd 92.9 0.6 1.3E-05 38.6 7.4 107 83-209 69-182 (237)
306 TIGR00497 hsdM type I restrict 92.7 3.7 8E-05 39.4 14.1 122 72-206 204-354 (501)
307 PF10354 DUF2431: Domain of un 92.5 2 4.4E-05 34.8 10.3 133 90-280 3-158 (166)
308 cd00315 Cyt_C5_DNA_methylase C 92.4 0.43 9.4E-06 42.0 6.7 72 86-183 2-75 (275)
309 PRK13699 putative methylase; P 92.4 0.58 1.3E-05 40.0 7.2 55 73-147 154-208 (227)
310 PF00107 ADH_zinc_N: Zinc-bind 92.1 1 2.3E-05 34.2 7.9 86 93-210 1-92 (130)
311 PF11312 DUF3115: Protein of u 92.1 0.82 1.8E-05 40.7 7.9 125 84-208 87-243 (315)
312 KOG1253 tRNA methyltransferase 92.0 0.2 4.2E-06 47.1 4.1 103 83-206 109-215 (525)
313 COG0686 Ald Alanine dehydrogen 91.6 0.69 1.5E-05 41.2 6.8 98 83-204 167-265 (371)
314 cd08254 hydroxyacyl_CoA_DH 6-h 91.6 2.7 5.8E-05 37.4 11.1 97 80-208 162-264 (338)
315 PTZ00357 methyltransferase; Pr 91.5 3 6.5E-05 41.2 11.5 104 85-202 702-830 (1072)
316 COG1867 TRM1 N2,N2-dimethylgua 91.3 1.1 2.4E-05 40.7 8.0 100 84-206 53-153 (380)
317 cd08230 glucose_DH Glucose deh 91.3 1.5 3.3E-05 39.7 9.2 98 81-209 170-271 (355)
318 KOG1098 Putative SAM-dependent 90.9 0.51 1.1E-05 45.6 5.7 95 82-205 43-156 (780)
319 PF07279 DUF1442: Protein of u 90.3 8.4 0.00018 32.5 11.8 103 82-207 40-148 (218)
320 TIGR02822 adh_fam_2 zinc-bindi 90.2 4.9 0.00011 36.1 11.5 94 79-208 161-255 (329)
321 cd08237 ribitol-5-phosphate_DH 90.2 2.5 5.4E-05 38.2 9.6 97 81-209 161-258 (341)
322 cd08281 liver_ADH_like1 Zinc-d 89.7 3.4 7.4E-05 37.7 10.2 99 78-208 186-291 (371)
323 KOG3924 Putative protein methy 89.5 1.9 4.2E-05 39.5 8.0 120 71-208 180-309 (419)
324 TIGR03451 mycoS_dep_FDH mycoth 89.4 4 8.7E-05 37.0 10.4 101 79-208 172-277 (358)
325 COG0270 Dcm Site-specific DNA 89.3 3.8 8.2E-05 37.0 10.0 100 84-210 3-118 (328)
326 cd08239 THR_DH_like L-threonin 89.0 5.3 0.00012 35.8 10.7 103 77-208 157-263 (339)
327 KOG1227 Putative methyltransfe 88.9 0.31 6.8E-06 42.9 2.5 98 84-204 195-293 (351)
328 PRK11524 putative methyltransf 88.7 0.52 1.1E-05 41.7 3.8 54 153-206 8-79 (284)
329 KOG2671 Putative RNA methylase 88.6 0.46 9.9E-06 42.8 3.3 111 76-205 201-352 (421)
330 TIGR03366 HpnZ_proposed putati 88.5 3.7 8.1E-05 35.8 9.2 99 79-208 116-219 (280)
331 cd05188 MDR Medium chain reduc 88.3 2.9 6.3E-05 35.6 8.3 98 82-208 133-233 (271)
332 PF07757 AdoMet_MTase: Predict 88.1 1 2.3E-05 33.5 4.4 22 83-104 58-79 (112)
333 PF07109 Mg-por_mtran_C: Magne 87.8 2.4 5.1E-05 31.0 6.1 77 185-280 12-88 (97)
334 PF03269 DUF268: Caenorhabditi 87.0 0.81 1.8E-05 36.7 3.5 43 168-210 61-114 (177)
335 TIGR01202 bchC 2-desacetyl-2-h 87.0 3.4 7.3E-05 36.8 8.1 88 83-208 144-232 (308)
336 COG2933 Predicted SAM-dependen 85.6 3.2 6.9E-05 36.2 6.7 85 82-198 210-294 (358)
337 KOG0821 Predicted ribosomal RN 85.1 8 0.00017 32.9 8.6 72 71-163 38-109 (326)
338 cd08232 idonate-5-DH L-idonate 84.8 6.9 0.00015 34.9 9.1 94 82-207 164-262 (339)
339 PLN02740 Alcohol dehydrogenase 84.7 10 0.00022 34.8 10.2 99 78-208 193-301 (381)
340 PF00145 DNA_methylase: C-5 cy 84.3 2.9 6.4E-05 37.1 6.4 70 86-183 2-74 (335)
341 cd00401 AdoHcyase S-adenosyl-L 84.0 6.1 0.00013 37.0 8.3 88 82-207 200-289 (413)
342 KOG2078 tRNA modification enzy 83.8 0.71 1.5E-05 42.7 2.1 64 81-163 247-310 (495)
343 KOG2360 Proliferation-associat 83.7 2.6 5.6E-05 38.6 5.5 86 76-179 206-293 (413)
344 PLN02586 probable cinnamyl alc 83.4 8.6 0.00019 35.0 9.1 96 82-208 182-279 (360)
345 KOG2352 Predicted spermine/spe 83.3 2.8 6.1E-05 39.5 5.8 112 84-215 296-423 (482)
346 PLN03154 putative allyl alcoho 83.1 11 0.00024 34.1 9.7 102 78-208 153-259 (348)
347 TIGR00518 alaDH alanine dehydr 83.1 2.8 6.2E-05 38.5 5.8 100 83-206 166-266 (370)
348 KOG2912 Predicted DNA methylas 83.0 4.3 9.3E-05 36.3 6.5 76 88-181 107-189 (419)
349 PRK10309 galactitol-1-phosphat 82.6 14 0.0003 33.3 10.1 101 80-209 157-262 (347)
350 KOG2651 rRNA adenine N-6-methy 82.4 4.2 9E-05 37.3 6.3 41 84-142 154-194 (476)
351 PF02737 3HCDH_N: 3-hydroxyacy 82.1 13 0.00029 30.3 8.9 137 124-272 22-177 (180)
352 PRK10669 putative cation:proto 81.6 27 0.00059 33.9 12.3 91 85-205 418-513 (558)
353 KOG2782 Putative SAM dependent 81.1 1.1 2.5E-05 37.7 2.2 93 71-182 31-130 (303)
354 PF03686 UPF0146: Uncharacteri 80.2 9 0.0002 29.5 6.6 89 84-208 14-103 (127)
355 TIGR02818 adh_III_F_hyde S-(hy 80.2 25 0.00054 32.0 11.0 102 78-208 180-288 (368)
356 cd08234 threonine_DH_like L-th 79.4 20 0.00044 31.7 10.0 99 78-208 154-258 (334)
357 PRK05786 fabG 3-ketoacyl-(acyl 79.0 36 0.00079 28.3 11.8 105 84-208 5-136 (238)
358 PRK03659 glutathione-regulated 79.0 27 0.00059 34.4 11.3 91 85-206 401-497 (601)
359 COG1062 AdhC Zn-dependent alco 78.4 31 0.00067 31.4 10.4 107 75-212 177-290 (366)
360 PLN02827 Alcohol dehydrogenase 78.4 20 0.00044 32.8 9.8 102 79-208 189-296 (378)
361 PF02153 PDH: Prephenate dehyd 78.3 18 0.00039 31.4 9.0 84 123-223 10-93 (258)
362 PRK10458 DNA cytosine methylas 77.9 14 0.0003 35.2 8.6 77 84-182 88-181 (467)
363 PF05206 TRM13: Methyltransfer 77.6 12 0.00027 32.6 7.6 69 82-164 17-85 (259)
364 TIGR03201 dearomat_had 6-hydro 77.6 16 0.00034 33.0 8.8 102 79-209 162-274 (349)
365 cd08285 NADP_ADH NADP(H)-depen 77.6 30 0.00065 31.0 10.6 102 79-208 162-267 (351)
366 cd08294 leukotriene_B4_DH_like 77.4 39 0.00085 29.7 11.2 98 77-207 137-241 (329)
367 cd08300 alcohol_DH_class_III c 77.4 27 0.0006 31.7 10.4 103 78-209 181-290 (368)
368 PF12692 Methyltransf_17: S-ad 77.3 9.2 0.0002 30.3 6.0 106 73-205 19-132 (160)
369 PLN02514 cinnamyl-alcohol dehy 76.9 23 0.0005 32.1 9.7 97 82-209 179-277 (357)
370 TIGR02825 B4_12hDH leukotriene 76.4 54 0.0012 29.0 11.8 101 77-207 132-237 (325)
371 cd05285 sorbitol_DH Sorbitol d 76.2 38 0.00082 30.3 10.8 102 77-207 156-265 (343)
372 KOG0023 Alcohol dehydrogenase, 76.0 13 0.00028 33.5 7.2 103 80-209 178-281 (360)
373 cd08255 2-desacetyl-2-hydroxye 75.7 31 0.00067 29.6 9.9 97 78-207 92-190 (277)
374 cd08261 Zn_ADH7 Alcohol dehydr 75.7 38 0.00082 30.1 10.7 101 78-207 154-258 (337)
375 cd08231 MDR_TM0436_like Hypoth 75.6 45 0.00096 30.0 11.2 97 82-207 176-280 (361)
376 COG3315 O-Methyltransferase in 75.4 60 0.0013 28.9 12.8 114 73-206 83-208 (297)
377 cd08245 CAD Cinnamyl alcohol d 75.3 42 0.00091 29.6 10.8 97 79-207 158-256 (330)
378 cd08242 MDR_like Medium chain 75.3 43 0.00093 29.4 10.8 95 77-206 149-244 (319)
379 PF11899 DUF3419: Protein of u 74.3 5.1 0.00011 37.0 4.6 58 152-209 275-336 (380)
380 PF14740 DUF4471: Domain of un 73.9 7 0.00015 34.6 5.2 32 169-205 221-252 (289)
381 PRK12939 short chain dehydroge 73.3 42 0.0009 28.1 9.9 77 84-179 7-93 (250)
382 cd08236 sugar_DH NAD(P)-depend 73.2 48 0.001 29.5 10.7 98 78-207 154-258 (343)
383 COG4017 Uncharacterized protei 73.2 13 0.00028 30.9 6.1 70 81-183 42-112 (254)
384 cd05278 FDH_like Formaldehyde 73.1 39 0.00085 30.0 10.1 100 80-207 164-267 (347)
385 TIGR02819 fdhA_non_GSH formald 73.1 71 0.0015 29.5 12.0 106 79-209 181-301 (393)
386 PF11899 DUF3419: Protein of u 73.0 9.9 0.00021 35.2 6.1 51 76-145 28-78 (380)
387 PLN02178 cinnamyl-alcohol dehy 72.9 19 0.00041 33.0 8.1 95 82-208 177-274 (375)
388 PRK07576 short chain dehydroge 72.8 54 0.0012 28.1 10.6 77 83-178 8-94 (264)
389 cd08301 alcohol_DH_plants Plan 72.7 36 0.00079 30.8 9.9 102 79-209 183-291 (369)
390 cd08233 butanediol_DH_like (2R 72.4 55 0.0012 29.3 11.0 102 78-208 167-273 (351)
391 cd08277 liver_alcohol_DH_like 72.4 16 0.00034 33.2 7.4 102 78-208 179-287 (365)
392 PF05050 Methyltransf_21: Meth 72.3 8.1 0.00018 30.3 4.9 39 89-143 1-42 (167)
393 PF10017 Methyltransf_33: Hist 72.0 6.9 0.00015 30.1 4.2 30 254-283 97-126 (127)
394 cd08295 double_bond_reductase_ 71.9 36 0.00077 30.4 9.5 101 78-207 146-251 (338)
395 PF10237 N6-adenineMlase: Prob 70.7 54 0.0012 26.4 12.6 94 83-206 25-122 (162)
396 COG1255 Uncharacterized protei 70.6 17 0.00036 27.6 5.7 89 84-208 14-103 (129)
397 cd08293 PTGR2 Prostaglandin re 70.3 77 0.0017 28.2 11.4 94 85-207 156-254 (345)
398 COG0604 Qor NADPH:quinone redu 70.3 41 0.00089 30.3 9.5 104 77-210 136-244 (326)
399 cd08238 sorbose_phosphate_red 69.9 68 0.0015 29.7 11.1 107 79-206 171-287 (410)
400 PF02719 Polysacc_synt_2: Poly 69.8 18 0.00039 32.2 6.8 79 91-184 4-91 (293)
401 PF04072 LCM: Leucine carboxyl 68.8 27 0.00059 28.5 7.4 81 86-184 81-171 (183)
402 TIGR00675 dcm DNA-methyltransf 68.6 11 0.00025 33.7 5.5 71 87-183 1-72 (315)
403 PRK08324 short chain dehydroge 68.3 67 0.0015 32.1 11.3 105 83-207 421-557 (681)
404 COG0275 Predicted S-adenosylme 68.1 9.7 0.00021 33.9 4.7 41 185-225 222-262 (314)
405 cd08298 CAD2 Cinnamyl alcohol 68.0 85 0.0018 27.6 11.3 95 77-207 161-256 (329)
406 COG1568 Predicted methyltransf 68.0 15 0.00033 32.4 5.7 102 83-206 152-259 (354)
407 cd05213 NAD_bind_Glutamyl_tRNA 67.5 59 0.0013 29.0 9.8 101 82-212 176-276 (311)
408 PRK06181 short chain dehydroge 67.0 69 0.0015 27.2 10.0 76 85-179 2-87 (263)
409 TIGR00936 ahcY adenosylhomocys 67.0 29 0.00064 32.4 7.9 88 82-207 193-282 (406)
410 PRK07806 short chain dehydroge 67.0 75 0.0016 26.6 10.8 104 84-206 6-133 (248)
411 TIGR00006 S-adenosyl-methyltra 65.9 6.9 0.00015 35.0 3.4 39 186-224 219-257 (305)
412 cd08278 benzyl_alcohol_DH Benz 65.9 60 0.0013 29.4 9.8 98 79-207 182-285 (365)
413 PRK08265 short chain dehydroge 65.5 86 0.0019 26.7 10.4 74 84-179 6-89 (261)
414 PRK06940 short chain dehydroge 65.0 92 0.002 26.9 11.1 99 86-205 4-123 (275)
415 PRK07109 short chain dehydroge 64.4 1.1E+02 0.0023 27.5 12.0 78 84-180 8-95 (334)
416 cd08296 CAD_like Cinnamyl alco 64.3 41 0.00089 29.9 8.3 100 79-207 159-259 (333)
417 PRK07774 short chain dehydroge 64.1 81 0.0018 26.4 9.8 78 84-180 6-93 (250)
418 PF02558 ApbA: Ketopantoate re 63.6 31 0.00068 26.7 6.6 40 168-210 65-104 (151)
419 COG1086 Predicted nucleoside-d 63.3 55 0.0012 31.9 9.0 85 84-184 250-339 (588)
420 PF01262 AlaDh_PNT_C: Alanine 63.2 3.9 8.5E-05 33.0 1.3 98 83-204 19-136 (168)
421 PF07652 Flavi_DEAD: Flaviviru 63.0 75 0.0016 25.2 10.3 109 85-212 6-138 (148)
422 PF01488 Shikimate_DH: Shikima 63.0 33 0.00071 26.4 6.4 79 81-183 9-88 (135)
423 PRK06914 short chain dehydroge 62.8 99 0.0021 26.5 10.8 78 85-179 4-90 (280)
424 KOG2918 Carboxymethyl transfer 62.8 1.2E+02 0.0025 27.4 13.8 43 83-140 87-129 (335)
425 PRK03562 glutathione-regulated 61.7 47 0.001 32.9 8.7 89 85-205 401-496 (621)
426 COG0287 TyrA Prephenate dehydr 61.3 1.2E+02 0.0025 26.8 10.5 85 124-223 28-112 (279)
427 cd08279 Zn_ADH_class_III Class 60.8 1E+02 0.0023 27.7 10.4 97 79-207 178-282 (363)
428 COG1748 LYS9 Saccharopine dehy 60.5 43 0.00093 31.1 7.6 72 85-179 2-77 (389)
429 PRK06249 2-dehydropantoate 2-r 60.4 1.1E+02 0.0024 27.2 10.2 39 169-210 71-109 (313)
430 PRK00050 16S rRNA m(4)C1402 me 60.3 10 0.00022 33.8 3.4 38 186-223 215-252 (296)
431 cd08263 Zn_ADH10 Alcohol dehyd 60.2 1E+02 0.0022 27.8 10.3 94 82-207 186-287 (367)
432 PRK08306 dipicolinate synthase 60.2 44 0.00095 29.7 7.5 89 83-206 151-240 (296)
433 PRK05476 S-adenosyl-L-homocyst 60.2 39 0.00084 31.8 7.4 87 83-207 211-299 (425)
434 PF03446 NAD_binding_2: NAD bi 60.1 34 0.00074 27.2 6.3 88 86-205 3-92 (163)
435 PLN00203 glutamyl-tRNA reducta 59.9 93 0.002 30.1 10.1 107 83-212 265-372 (519)
436 KOG1209 1-Acyl dihydroxyaceton 59.7 62 0.0013 27.6 7.7 72 84-179 7-90 (289)
437 PRK06701 short chain dehydroge 59.4 1.2E+02 0.0026 26.4 10.8 106 83-207 45-181 (290)
438 COG5379 BtaA S-adenosylmethion 58.9 25 0.00054 31.3 5.5 50 78-146 58-107 (414)
439 PF06557 DUF1122: Protein of u 58.5 33 0.00072 27.6 5.6 62 187-278 66-127 (170)
440 PF13561 adh_short_C2: Enoyl-( 58.1 70 0.0015 26.8 8.3 83 123-209 19-135 (241)
441 PRK05708 2-dehydropantoate 2-r 57.8 1.4E+02 0.003 26.5 11.7 103 85-212 3-109 (305)
442 PRK08267 short chain dehydroge 57.8 1.2E+02 0.0025 25.7 9.8 74 86-180 3-87 (260)
443 PRK05872 short chain dehydroge 57.7 1.3E+02 0.0028 26.3 10.3 78 83-180 8-95 (296)
444 PRK09496 trkA potassium transp 57.7 1.5E+02 0.0032 27.7 11.2 92 86-205 2-97 (453)
445 COG0541 Ffh Signal recognition 57.4 56 0.0012 30.8 7.7 124 70-211 77-225 (451)
446 PRK09496 trkA potassium transp 57.2 41 0.00089 31.5 7.2 70 84-177 231-304 (453)
447 cd08240 6_hydroxyhexanoate_dh_ 57.1 1.4E+02 0.0031 26.5 10.7 93 83-207 175-274 (350)
448 PRK07066 3-hydroxybutyryl-CoA 57.1 74 0.0016 28.7 8.5 159 85-273 8-183 (321)
449 PRK07533 enoyl-(acyl carrier p 56.6 1.2E+02 0.0027 25.7 10.8 106 83-207 9-148 (258)
450 cd05281 TDH Threonine dehydrog 56.2 1.2E+02 0.0027 26.9 10.0 96 82-207 162-262 (341)
451 cd05283 CAD1 Cinnamyl alcohol 55.8 1.2E+02 0.0027 26.9 9.8 98 79-208 165-264 (337)
452 PRK09072 short chain dehydroge 55.5 1.3E+02 0.0028 25.5 10.4 77 84-180 5-90 (263)
453 PRK07454 short chain dehydroge 55.1 1E+02 0.0022 25.7 8.8 78 84-180 6-93 (241)
454 cd05279 Zn_ADH1 Liver alcohol 54.7 1.6E+02 0.0034 26.7 10.5 103 78-208 178-286 (365)
455 PF06460 NSP13: Coronavirus NS 53.7 89 0.0019 27.4 7.8 98 79-206 57-168 (299)
456 PRK07326 short chain dehydroge 53.7 82 0.0018 26.1 8.0 76 84-179 6-91 (237)
457 COG0863 DNA modification methy 53.5 57 0.0012 28.5 7.2 49 80-147 219-267 (302)
458 TIGR00692 tdh L-threonine 3-de 53.4 1.4E+02 0.0031 26.4 9.9 98 82-208 160-262 (340)
459 PLN02494 adenosylhomocysteinas 53.2 46 0.001 31.8 6.7 90 82-208 252-342 (477)
460 KOG1269 SAM-dependent methyltr 53.1 50 0.0011 30.4 6.8 107 84-210 181-316 (364)
461 cd08260 Zn_ADH6 Alcohol dehydr 52.9 1.6E+02 0.0034 26.2 10.1 100 79-207 161-264 (345)
462 PF01795 Methyltransf_5: MraW 52.7 12 0.00025 33.6 2.5 40 185-224 219-258 (310)
463 PRK12921 2-dehydropantoate 2-r 52.3 1.5E+02 0.0032 26.0 9.6 35 169-206 67-101 (305)
464 PRK08213 gluconate 5-dehydroge 52.1 1.1E+02 0.0024 25.8 8.7 78 83-179 11-98 (259)
465 cd08265 Zn_ADH3 Alcohol dehydr 51.7 1.6E+02 0.0034 26.9 10.0 100 80-207 200-307 (384)
466 PF01555 N6_N4_Mtase: DNA meth 51.7 21 0.00045 29.6 3.9 21 186-206 35-55 (231)
467 PF01206 TusA: Sulfurtransfera 51.2 71 0.0015 21.2 7.1 30 254-284 39-68 (70)
468 PRK07523 gluconate 5-dehydroge 50.8 1.1E+02 0.0024 25.8 8.3 79 83-180 9-97 (255)
469 PRK06522 2-dehydropantoate 2-r 50.6 1.7E+02 0.0037 25.5 10.8 78 124-209 23-102 (304)
470 PRK13341 recombination factor 50.4 1.8E+02 0.004 29.5 10.8 117 75-211 484-604 (725)
471 COG2961 ComJ Protein involved 49.9 1.8E+02 0.0038 25.4 11.7 95 88-205 93-193 (279)
472 PRK07417 arogenate dehydrogena 49.6 78 0.0017 27.7 7.3 65 124-203 23-87 (279)
473 PRK07502 cyclohexadienyl dehyd 49.5 1.2E+02 0.0025 26.9 8.6 66 125-204 32-97 (307)
474 PRK09548 PTS system ascorbate- 49.5 60 0.0013 31.9 6.9 61 82-180 504-564 (602)
475 COG1179 Dinucleotide-utilizing 49.4 49 0.0011 28.6 5.6 33 84-133 30-63 (263)
476 PRK05854 short chain dehydroge 49.2 1.6E+02 0.0035 26.0 9.4 81 83-180 13-103 (313)
477 PRK06949 short chain dehydroge 48.9 1.2E+02 0.0027 25.4 8.4 78 83-179 8-95 (258)
478 PRK07814 short chain dehydroge 48.0 1.3E+02 0.0028 25.6 8.4 78 83-179 9-96 (263)
479 PRK07984 enoyl-(acyl carrier p 47.9 1.8E+02 0.0039 25.0 11.0 78 84-180 6-94 (262)
480 PRK05855 short chain dehydroge 47.4 2E+02 0.0044 27.4 10.6 79 83-180 314-402 (582)
481 PRK05396 tdh L-threonine 3-deh 46.3 2.1E+02 0.0045 25.4 9.8 98 82-208 162-264 (341)
482 TIGR00853 pts-lac PTS system, 45.8 64 0.0014 23.3 5.2 41 154-200 34-74 (95)
483 PRK07063 short chain dehydroge 45.6 1.6E+02 0.0034 24.9 8.6 80 84-180 7-96 (260)
484 PRK07666 fabG 3-ketoacyl-(acyl 45.6 1.6E+02 0.0034 24.5 8.5 78 84-180 7-94 (239)
485 PTZ00075 Adenosylhomocysteinas 45.6 51 0.0011 31.5 5.7 87 82-206 252-340 (476)
486 COG2326 Uncharacterized conser 45.4 57 0.0012 28.4 5.5 20 254-273 165-184 (270)
487 PRK08594 enoyl-(acyl carrier p 45.3 1.9E+02 0.0042 24.6 10.5 104 84-207 7-147 (257)
488 cd08286 FDH_like_ADH2 formalde 45.2 2.2E+02 0.0048 25.2 10.7 100 80-207 163-266 (345)
489 KOG2811 Uncharacterized conser 44.9 45 0.00098 30.6 5.0 24 83-106 182-205 (420)
490 PRK06124 gluconate 5-dehydroge 44.3 1.6E+02 0.0036 24.7 8.5 79 83-180 10-98 (256)
491 PF08484 Methyltransf_14: C-me 44.1 1.4E+02 0.0031 23.8 7.4 91 83-205 67-157 (160)
492 PRK05867 short chain dehydroge 44.1 1.5E+02 0.0033 24.9 8.2 79 83-180 8-96 (253)
493 PRK00045 hemA glutamyl-tRNA re 44.0 1.8E+02 0.004 27.2 9.3 40 82-138 180-220 (423)
494 PRK15057 UDP-glucose 6-dehydro 43.7 1.8E+02 0.0038 27.0 9.0 19 125-143 23-41 (388)
495 cd08291 ETR_like_1 2-enoyl thi 43.1 2.3E+02 0.005 24.9 10.6 92 84-208 143-243 (324)
496 KOG0022 Alcohol dehydrogenase, 42.9 71 0.0015 28.9 5.8 104 78-211 187-298 (375)
497 PRK08217 fabG 3-ketoacyl-(acyl 42.6 1.8E+02 0.0039 24.2 8.4 77 84-179 5-91 (253)
498 PRK06172 short chain dehydroge 42.6 1.8E+02 0.0039 24.4 8.4 78 84-180 7-94 (253)
499 PF02086 MethyltransfD12: D12 42.3 38 0.00083 28.9 4.2 50 73-141 10-59 (260)
500 PRK08293 3-hydroxybutyryl-CoA 41.8 2.2E+02 0.0049 24.8 9.1 76 124-204 26-117 (287)
No 1
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=100.00 E-value=6.6e-44 Score=296.77 Aligned_cols=255 Identities=64% Similarity=1.002 Sum_probs=238.6
Q ss_pred ccCCCCccccccccchhHHhHHHHHHHhHhhHHHhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHH
Q 036563 23 LLHSHATSFGFKEVPAEEKSQLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRIL 102 (288)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~ 102 (288)
..+++.+||||+.+.++++++.+.++|++++..||.+++.|+.++|+.|++.++..+.+.+++++||++||||.++..++
T Consensus 40 ~~~~~~Thfgf~tV~e~eke~~V~~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril 119 (296)
T KOG1540|consen 40 SVASKCTHFGFKTVRESEKERLVHHVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRIL 119 (296)
T ss_pred ccccccccccccccchhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC-CceEEEEcccccCCCCCCCeeEEEeccccc
Q 036563 103 DTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD-KSLLWVEGDAEALCFEDSTMDGYTIAFGIR 181 (288)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~ 181 (288)
++.+. ..++...+|+++|+|++|+..++++..+.++.+ .++.|+.+|++++||++++||.+++.+.+.
T Consensus 120 ~~v~s-----------~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIR 188 (296)
T KOG1540|consen 120 RHVKS-----------QFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIR 188 (296)
T ss_pred Hhhcc-----------ccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEeccee
Confidence 99741 011134899999999999999999998777762 349999999999999999999999999999
Q ss_pred cccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHH
Q 036563 182 NVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAM 261 (288)
Q Consensus 182 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (288)
++++++++|++++|+|||||+|.|.|++...++.+.++++.+.+.++|.+|.+..+++.+|+|+.++++++++.+++..+
T Consensus 189 N~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~m 268 (296)
T KOG1540|consen 189 NVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASM 268 (296)
T ss_pred cCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcEEE-EEEeeCCeeEEEEeeeC
Q 036563 262 ISDAGFQKVE-YENLVGGVVAIHSGLKI 288 (288)
Q Consensus 262 l~~aGf~~v~-~~~~~~~~~~~~~~~k~ 288 (288)
.+++||..+. ++++.+|+++||.+.|.
T Consensus 269 iedaGF~~~~~ye~lt~Gv~aIH~giK~ 296 (296)
T KOG1540|consen 269 IEDAGFSSVNGYENLTFGVVAIHSGIKL 296 (296)
T ss_pred HHHcCCccccccccceeeeeeeehhccC
Confidence 9999999997 99999999999998874
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=100.00 E-value=3.6e-40 Score=279.53 Aligned_cols=235 Identities=51% Similarity=0.814 Sum_probs=221.1
Q ss_pred ccchhHHhHHHHHHHhHhhHHHhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhh
Q 036563 35 EVPAEEKSQLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQ 114 (288)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~ 114 (288)
.+....+.+.+.++|+++++.||.++++++.+.++.|++.++..+...++.+|||+|||||.++..+++..+
T Consensus 3 ~~~~~~k~~~v~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-------- 74 (238)
T COG2226 3 MVAKDEKQEKVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-------- 74 (238)
T ss_pred cccccccHHHHHHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC--------
Confidence 345556678999999999999999999999999999999999999888899999999999999999999973
Q ss_pred cccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHH
Q 036563 115 DVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAY 194 (288)
Q Consensus 115 ~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~ 194 (288)
.++++++|+|+.|++.++++....+.. +++|+.+|++++|+++++||+|.+.+.+++++|++++|++++
T Consensus 75 ---------~g~v~~~D~s~~ML~~a~~k~~~~~~~--~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~ 143 (238)
T COG2226 75 ---------TGEVVGLDISESMLEVAREKLKKKGVQ--NVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMY 143 (238)
T ss_pred ---------CceEEEEECCHHHHHHHHHHhhccCcc--ceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHH
Confidence 689999999999999999999887765 499999999999999999999999999999999999999999
Q ss_pred hhccCCcEEEEEeccCCChHHHHHHHHHhhcc-ccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEE
Q 036563 195 RVLKRGGRFLCLELSHVDIPVFKELYDYYSFS-VIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYE 273 (288)
Q Consensus 195 ~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 273 (288)
|+|||||++++.|++.|..+++...+..+.+. ++|.++.+...+.+.|.|+.+++..+++.+++..+++++||..+..+
T Consensus 144 RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~ 223 (238)
T COG2226 144 RVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYE 223 (238)
T ss_pred HhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeE
Confidence 99999999999999999998888888877777 99999999999999999999999999999999999999999999999
Q ss_pred EeeCCeeEEEEeeeC
Q 036563 274 NLVGGVVAIHSGLKI 288 (288)
Q Consensus 274 ~~~~~~~~~~~~~k~ 288 (288)
++.+|++++|++.|+
T Consensus 224 ~~~~G~~~l~~g~K~ 238 (238)
T COG2226 224 NLTFGIVALHRGYKP 238 (238)
T ss_pred eeeeeeEEEEEEecC
Confidence 999999999999986
No 3
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=100.00 E-value=7.3e-40 Score=280.17 Aligned_cols=231 Identities=44% Similarity=0.762 Sum_probs=107.7
Q ss_pred hHHhHHHHHHHhHhhHHHhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccc
Q 036563 39 EEKSQLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLE 118 (288)
Q Consensus 39 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~ 118 (288)
+.+++.+++.|+.++..||..++.++.+.++.|++.+.+.+...++.+|||+|||||..+..+++..+
T Consensus 3 ~~k~~~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~------------ 70 (233)
T PF01209_consen 3 EAKEQYVRKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVG------------ 70 (233)
T ss_dssp ----------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS------------
T ss_pred ccHHHHHHHHHHHHHHHhCCCccccCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCC------------
Confidence 34567899999999999999999999999999999999988888899999999999999999988864
Q ss_pred cccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhcc
Q 036563 119 DDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLK 198 (288)
Q Consensus 119 ~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~ 198 (288)
+.++++++|+|+.|++.++++....+. .+++++++|++++|+++++||+|++.+.+++++|+.++|++++|+||
T Consensus 71 ----~~~~v~~vD~s~~ML~~a~~k~~~~~~--~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLk 144 (233)
T PF01209_consen 71 ----PNGKVVGVDISPGMLEVARKKLKREGL--QNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLK 144 (233)
T ss_dssp -------EEEEEES-HHHHHHHHHHHHHTT----SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEE
T ss_pred ----CccEEEEecCCHHHHHHHHHHHHhhCC--CCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcC
Confidence 568999999999999999999987765 38999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCC
Q 036563 199 RGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGG 278 (288)
Q Consensus 199 pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~ 278 (288)
|||.++++|++.|..+.+...+..|.+.++|.++.++.++.+.|.|+.+++.+|++.+++.++|+++||+.++.+++.+|
T Consensus 145 PGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G 224 (233)
T PF01209_consen 145 PGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYRPLTFG 224 (233)
T ss_dssp EEEEEEEEEEEB-SSHHHHHHHHH--------------------------------------------------------
T ss_pred CCeEEEEeeccCCCCchhhceeeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEeee
Q 036563 279 VVAIHSGLK 287 (288)
Q Consensus 279 ~~~~~~~~k 287 (288)
++.+|+|.|
T Consensus 225 ~~~i~~g~K 233 (233)
T PF01209_consen 225 IVTIHVGTK 233 (233)
T ss_dssp ---------
T ss_pred cccccccCC
Confidence 999999987
No 4
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=100.00 E-value=5.2e-31 Score=230.05 Aligned_cols=231 Identities=29% Similarity=0.484 Sum_probs=194.6
Q ss_pred hHHhHHHHHHHhHhhHHHhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccc
Q 036563 39 EEKSQLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLE 118 (288)
Q Consensus 39 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~ 118 (288)
-...+.+++.|+.++..||..++.++.+.++.|++.+.+.+...++.+|||+|||+|.++..+++..+
T Consensus 29 ~~~~~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~------------ 96 (261)
T PLN02233 29 VKCANERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVG------------ 96 (261)
T ss_pred hhhHHHHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhC------------
Confidence 34467789999999999999888888888888988777777777888999999999999988888753
Q ss_pred cccCCCceEEEEeCChhHHHHHHHHhhh--cCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhh
Q 036563 119 DDLQEETRIYVCDINPNMLNVGKKRALE--RGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRV 196 (288)
Q Consensus 119 ~~~~~~~~v~~~D~s~~~~~~a~~~~~~--~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~ 196 (288)
+..+++++|+|++|++.++++... .... .+++++.+|+.++++++++||+|++++++++++++..+++++.++
T Consensus 97 ----~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~-~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rv 171 (261)
T PLN02233 97 ----SDGKVMGLDFSSEQLAVAASRQELKAKSCY-KNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRV 171 (261)
T ss_pred ----CCCEEEEEECCHHHHHHHHHHhhhhhhccC-CCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHH
Confidence 357999999999999999877531 1111 479999999999999989999999999999999999999999999
Q ss_pred ccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 197 LKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 197 L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
|||||.+++.++..+...+...+...+.....+.++... +..+.|.|+.+++.++++.+++.++|+++||++++...+.
T Consensus 172 LkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~~~~~ 250 (261)
T PLN02233 172 LKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGY-GLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAKHYEIS 250 (261)
T ss_pred cCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHh-CChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEEEEcC
Confidence 999999999999988777666665555444444444433 3356788899999999999999999999999999999999
Q ss_pred CCeeEEEEeee
Q 036563 277 GGVVAIHSGLK 287 (288)
Q Consensus 277 ~~~~~~~~~~k 287 (288)
+|...++++++
T Consensus 251 ~g~~~~~~~~~ 261 (261)
T PLN02233 251 GGLMGNLVATR 261 (261)
T ss_pred CCeeEEEEEeC
Confidence 99999999875
No 5
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.97 E-value=8.4e-30 Score=218.91 Aligned_cols=230 Identities=38% Similarity=0.657 Sum_probs=201.1
Q ss_pred HHhHHHHHHHhHhhHHHhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhccccc
Q 036563 40 EKSQLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLED 119 (288)
Q Consensus 40 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~ 119 (288)
.+.+.+.++|+.++..||..+..++...+..|++.++..+...++.+|||+|||+|.++..+++..+
T Consensus 2 ~~~~~~~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~------------- 68 (231)
T TIGR02752 2 SKEERVHKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVG------------- 68 (231)
T ss_pred chHHHHHHHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhC-------------
Confidence 4578899999999999999988888888888998899999888889999999999999999998864
Q ss_pred ccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccC
Q 036563 120 DLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKR 199 (288)
Q Consensus 120 ~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~p 199 (288)
+..+++++|+++++++.++++....+. +++.++.+|+...++++++||+|++.+++++.++...+++++.++|+|
T Consensus 69 ---~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~ 143 (231)
T TIGR02752 69 ---PEGHVIGLDFSENMLSVGRQKVKDAGL--HNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKP 143 (231)
T ss_pred ---CCCEEEEEECCHHHHHHHHHHHHhcCC--CceEEEEechhcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCc
Confidence 457999999999999999998876655 479999999988887788999999999999999999999999999999
Q ss_pred CcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCe
Q 036563 200 GGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGV 279 (288)
Q Consensus 200 gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~ 279 (288)
||.+++.+...+....+......+.....+..+..+......+.++.+...++++.+++.++|+++||+++++..+.+|.
T Consensus 144 gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~ 223 (231)
T TIGR02752 144 GGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGV 223 (231)
T ss_pred CeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccce
Confidence 99999998887777767766666665666767766665556666777788889999999999999999999999999999
Q ss_pred eEEEEeee
Q 036563 280 VAIHSGLK 287 (288)
Q Consensus 280 ~~~~~~~k 287 (288)
..+++++|
T Consensus 224 ~~~~~~~~ 231 (231)
T TIGR02752 224 AAMHMGFK 231 (231)
T ss_pred EEEEEEEC
Confidence 99999987
No 6
>PRK05785 hypothetical protein; Provisional
Probab=99.97 E-value=5.3e-30 Score=219.01 Aligned_cols=217 Identities=23% Similarity=0.312 Sum_probs=191.1
Q ss_pred HHhHHHHHHHhHhhHHHhhhhhhhhhhhhHHHHHHHHhhcCC--CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhccc
Q 036563 40 EKSQLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNP--FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVL 117 (288)
Q Consensus 40 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~ 117 (288)
.+.+.+++.|+.++..||..++.++.+.+..|++.+++.+.. .++.+|||+|||||..+..+++..
T Consensus 6 ~~~~~v~~~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~------------ 73 (226)
T PRK05785 6 ATWEELQEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF------------ 73 (226)
T ss_pred ccHHHHHHHHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc------------
Confidence 345788999999999999999888888888888877765532 346799999999999999888764
Q ss_pred ccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhc
Q 036563 118 EDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVL 197 (288)
Q Consensus 118 ~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L 197 (288)
+.+++++|+|++|++.++++ ..++++|++.+++++++||+|++.+++++++++..++++++|+|
T Consensus 74 ------~~~v~gvD~S~~Ml~~a~~~----------~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvL 137 (226)
T PRK05785 74 ------KYYVVALDYAENMLKMNLVA----------DDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVS 137 (226)
T ss_pred ------CCEEEEECCCHHHHHHHHhc----------cceEEechhhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHh
Confidence 26899999999999998763 13467899999999999999999999999999999999999999
Q ss_pred cCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeC
Q 036563 198 KRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVG 277 (288)
Q Consensus 198 ~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~ 277 (288)
||. +.+++++.|+....+.+...|...++|.++.++.++.+.|.|+.+++..|++.+++.++|+++| ..++.+++.+
T Consensus 138 kp~--~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~-~~~~~~~~~~ 214 (226)
T PRK05785 138 RKQ--VGFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYA-DIKVYEERGL 214 (226)
T ss_pred cCc--eEEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHh-CceEEEEccc
Confidence 993 4456788888888888888888889999999999999999999999999999999999999984 7799999999
Q ss_pred CeeEEEEeee
Q 036563 278 GVVAIHSGLK 287 (288)
Q Consensus 278 ~~~~~~~~~k 287 (288)
|++++++++|
T Consensus 215 G~~~~~~~~k 224 (226)
T PRK05785 215 GLVYFVVGSS 224 (226)
T ss_pred cEEEEEEEee
Confidence 9999999998
No 7
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.95 E-value=5.4e-26 Score=195.67 Aligned_cols=233 Identities=48% Similarity=0.817 Sum_probs=189.3
Q ss_pred hHHhHHHHHHHhHhhHHHhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccc
Q 036563 39 EEKSQLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLE 118 (288)
Q Consensus 39 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~ 118 (288)
+.+++.+.+.|+.++..|+..+..+..+.+..+...++..+...++.+|||+|||+|.++..+++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~------------ 74 (239)
T PRK00216 7 EEKQEKVAEMFDSIAPKYDLMNDLLSFGLHRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVG------------ 74 (239)
T ss_pred ccchHHHHHHHHHhhhhHHHHHHHHhcCCcHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcC------------
Confidence 45677889999999999997666555566677777777777776778999999999999999988862
Q ss_pred cccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhcc
Q 036563 119 DDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLK 198 (288)
Q Consensus 119 ~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~ 198 (288)
+..+++++|+++.+++.++++....+.. .++.+..+|+.+.+++.++||+|++..++++..++..+++++.++|+
T Consensus 75 ----~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~ 149 (239)
T PRK00216 75 ----KTGEVVGLDFSEGMLAVGREKLRDLGLS-GNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLK 149 (239)
T ss_pred ----CCCeEEEEeCCHHHHHHHHHhhcccccc-cCeEEEecccccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhcc
Confidence 2589999999999999999987665443 57899999998877767789999999999999999999999999999
Q ss_pred CCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCC
Q 036563 199 RGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGG 278 (288)
Q Consensus 199 pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~ 278 (288)
|||.+++.+...+....+......+.....+..+..+......+.+..+.+..+++.+++.++|+++||+++....+.+|
T Consensus 150 ~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~ 229 (239)
T PRK00216 150 PGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGG 229 (239)
T ss_pred CCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecC
Confidence 99999998887776554444444443333444444444444555556666777889999999999999999999999999
Q ss_pred eeEEEEeeeC
Q 036563 279 VVAIHSGLKI 288 (288)
Q Consensus 279 ~~~~~~~~k~ 288 (288)
.++++.++||
T Consensus 230 ~~~~~~~~~~ 239 (239)
T PRK00216 230 IVALHVGYKP 239 (239)
T ss_pred cEEEEEEecC
Confidence 9999999986
No 8
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.94 E-value=2.1e-24 Score=183.82 Aligned_cols=222 Identities=47% Similarity=0.799 Sum_probs=183.3
Q ss_pred HHHHhHhhHHHhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCc
Q 036563 46 SNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEET 125 (288)
Q Consensus 46 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 125 (288)
.++|+.++..||..+..+....+..+.+.+...+...++.+|||+|||+|..+..+++..+ ...
T Consensus 2 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~----------------~~~ 65 (223)
T TIGR01934 2 QEMFDRIAPKYDLLNDLLSFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAP----------------DRG 65 (223)
T ss_pred HhHHHHHHhhhhHHHHHHhcccHHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcC----------------CCc
Confidence 5689999999999887777676777888888887777788999999999999999988863 226
Q ss_pred eEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 126 RIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 126 ~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
+++++|+++.+++.++++.. .. .++.+..+|+.+.+++.++||+|++...+++..++..+++++.+.|+|||.+++
T Consensus 66 ~~~~iD~~~~~~~~~~~~~~---~~-~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~ 141 (223)
T TIGR01934 66 KVTGVDFSSEMLEVAKKKSE---LP-LNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVI 141 (223)
T ss_pred eEEEEECCHHHHHHHHHHhc---cC-CCceEEecchhcCCCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEE
Confidence 89999999999999988765 11 578999999988777777899999999999999999999999999999999999
Q ss_pred EeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEe
Q 036563 206 LELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSG 285 (288)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~ 285 (288)
.+...+....+......+.....+.++.........+.+..++...+++.++|+++|+++||+++..+++.++++.++++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~ 221 (223)
T TIGR01934 142 LEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVG 221 (223)
T ss_pred EEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEe
Confidence 88877655545555555544444555555555555666666777778899999999999999999999999999999998
Q ss_pred ee
Q 036563 286 LK 287 (288)
Q Consensus 286 ~k 287 (288)
+|
T Consensus 222 ~~ 223 (223)
T TIGR01934 222 KK 223 (223)
T ss_pred cC
Confidence 76
No 9
>PLN02244 tocopherol O-methyltransferase
Probab=99.89 E-value=8.8e-22 Score=178.20 Aligned_cols=201 Identities=15% Similarity=0.177 Sum_probs=148.1
Q ss_pred hHHhHHHHHHHhHhhHHHhhhh-hhhhhh-------------hhHHHHHHHHhhcCC-----CCCCeEEEecCCccHHHH
Q 036563 39 EEKSQLVSNVFSSVAKNYDLMN-DLMSGG-------------LHRLWKDRLVSKLNP-----FPGMKHLDVAGGTGDVAF 99 (288)
Q Consensus 39 ~~~~~~~~~~~~~~~~~y~~~~-~~~~~~-------------~~~~~~~~~~~~l~~-----~~~~~vLDiG~G~G~~~~ 99 (288)
..-.+.+..+|+..+..|+..- ..+..+ .+....+.+++.+.. .++.+|||||||+|.++.
T Consensus 55 ~~~~~~i~~~Yd~~~~~~e~~~g~~~h~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~ 134 (340)
T PLN02244 55 ADLKEGIAEFYDESSGVWEDVWGEHMHHGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSR 134 (340)
T ss_pred hhHHHHHHHHHccchHHHHHHhCCcceeeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHH
Confidence 3345678899998888887532 111111 112233445555554 567899999999999999
Q ss_pred HHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccc
Q 036563 100 RILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFG 179 (288)
Q Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~ 179 (288)
.+++.+ +.+++++|+++.|++.+++.....++. +++++..+|+.++++++++||+|++..+
T Consensus 135 ~La~~~------------------g~~v~gvD~s~~~i~~a~~~~~~~g~~-~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 135 YLARKY------------------GANVKGITLSPVQAARANALAAAQGLS-DKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred HHHHhc------------------CCEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEEcCcccCCCCCCCccEEEECCc
Confidence 999875 379999999999999999988777665 6799999999998888899999999999
Q ss_pred cccccCHHHHHHHHHhhccCCcEEEEEeccCCChH--------HHHHHHHHhhccccccccccccCCCcchhhhHHHHhc
Q 036563 180 IRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIP--------VFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRR 251 (288)
Q Consensus 180 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (288)
++|+++...+++++.++|||||.+++.++...... .......... . .+ ....
T Consensus 196 ~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~--------~-------~~-----~~p~ 255 (340)
T PLN02244 196 GEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKIC--------A-------AY-----YLPA 255 (340)
T ss_pred hhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHH--------h-------hc-----cCCC
Confidence 99999999999999999999999999876542110 0011111100 0 00 0012
Q ss_pred CCChHHHHHHHHHcCCcEEEEEEeeCC
Q 036563 252 FPPQEKFAAMISDAGFQKVEYENLVGG 278 (288)
Q Consensus 252 ~~~~~~~~~~l~~aGf~~v~~~~~~~~ 278 (288)
+.+.+++.++++++||.+++..++...
T Consensus 256 ~~s~~~~~~~l~~aGf~~v~~~d~s~~ 282 (340)
T PLN02244 256 WCSTSDYVKLAESLGLQDIKTEDWSEH 282 (340)
T ss_pred CCCHHHHHHHHHHCCCCeeEeeeCcHH
Confidence 347899999999999999999887654
No 10
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.86 E-value=1.1e-20 Score=153.29 Aligned_cols=158 Identities=27% Similarity=0.432 Sum_probs=132.3
Q ss_pred EEEeCChhHHHHHHHHhhhcC--CCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 128 YVCDINPNMLNVGKKRALERG--YPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 128 ~~~D~s~~~~~~a~~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
+|+|+|++|++.|+++....+ .. .+++++++|+.++++++++||+|++.+++++++|+..++++++++|||||.+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~-~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCY-KCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCC-CceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEE
Confidence 489999999999987764322 11 479999999999999888999999999999999999999999999999999999
Q ss_pred EeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEe
Q 036563 206 LELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSG 285 (288)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~ 285 (288)
.++..++..........+.....+..+. +......|.|+.+++..+++.+++.++|+++||+.+....+.+|+++++++
T Consensus 80 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~ 158 (160)
T PLN02232 80 LDFNKSNQSVTTFMQGWMIDNVVVPVAT-VYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFMGNLVA 158 (160)
T ss_pred EECCCCChHHHHHHHHHHccchHhhhhH-HhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHhHeeEe
Confidence 9999877655554444443333344444 344577899999999999999999999999999999999999999999998
Q ss_pred ee
Q 036563 286 LK 287 (288)
Q Consensus 286 ~k 287 (288)
.|
T Consensus 159 ~~ 160 (160)
T PLN02232 159 MR 160 (160)
T ss_pred eC
Confidence 75
No 11
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.85 E-value=2.1e-19 Score=160.40 Aligned_cols=160 Identities=14% Similarity=0.167 Sum_probs=120.3
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||||||+|.++..+++. +.+|+++|+++.+++.++++....+.. .++.+..+|+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~-------------------g~~V~GID~s~~~i~~Ar~~~~~~~~~-~~i~~~~~da 189 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM-------------------GATVTGVDAVDKNVKIARLHADMDPVT-STIEYLCTTA 189 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc-------------------CCEEEEEeCCHHHHHHHHHHHHhcCcc-cceeEEecCH
Confidence 35679999999999999888764 379999999999999999876544332 4789999999
Q ss_pred ccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHH-HHhhccccccccccccCCCc
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELY-DYYSFSVIPAIGELVAGDRG 240 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 240 (288)
+++++.+++||+|++..+++|+.++..+++++.++|||||.+++.........+..... ..+....++ .+..
T Consensus 190 e~l~~~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp------~gth- 262 (322)
T PLN02396 190 EKLADEGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLP------KGTH- 262 (322)
T ss_pred HHhhhccCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCC------CCCc-
Confidence 88887778999999999999999999999999999999999998776553222221111 111101111 1111
Q ss_pred chhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEe
Q 036563 241 SYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275 (288)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 275 (288)
. +..+++++++.++|+++||+++++.-+
T Consensus 263 ~-------~~~f~tp~eL~~lL~~aGf~i~~~~G~ 290 (322)
T PLN02396 263 Q-------WSSFVTPEELSMILQRASVDVKEMAGF 290 (322)
T ss_pred C-------ccCCCCHHHHHHHHHHcCCeEEEEeee
Confidence 1 123679999999999999999887544
No 12
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.84 E-value=9.5e-20 Score=163.25 Aligned_cols=181 Identities=25% Similarity=0.367 Sum_probs=133.9
Q ss_pred HHHHhHhhHHHhhhhhhhhhhhhHHHHHHHHhhcCC-CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCC
Q 036563 46 SNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNP-FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEE 124 (288)
Q Consensus 46 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 124 (288)
..+|+..+..||.... .....+.+++.+++.... .++.+|||+|||+|.++..+++.. +.
T Consensus 77 ~~~y~~lA~~YD~~~~--~~~~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~-----------------~~ 137 (340)
T PLN02490 77 FWFYRFLSIVYDHIIN--PGHWTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHV-----------------DA 137 (340)
T ss_pred eeEccceeeecCCCee--cCcchHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHC-----------------CC
Confidence 3355666777775322 112234444445554443 456799999999999999888875 34
Q ss_pred ceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEE
Q 036563 125 TRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 125 ~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~ 204 (288)
.+++++|++++|++.++++... .+++++.+|++++++++++||+|+++.+++++++...+++++.++|+|||.++
T Consensus 138 ~~VtgVD~S~~mL~~A~~k~~~-----~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~Lv 212 (340)
T PLN02490 138 KNVTILDQSPHQLAKAKQKEPL-----KECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKAC 212 (340)
T ss_pred CEEEEEECCHHHHHHHHHhhhc-----cCCeEEeccHHhCCCCCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEE
Confidence 7899999999999999887542 46889999999888888899999999999999999999999999999999998
Q ss_pred EEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 205 CLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 205 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
+++...+... ....... ....+++.+++.++|+++||+.+++..+.
T Consensus 213 Ii~~~~p~~~-~~r~~~~-------------------------~~~~~~t~eEl~~lL~~aGF~~V~i~~i~ 258 (340)
T PLN02490 213 LIGPVHPTFW-LSRFFAD-------------------------VWMLFPKEEEYIEWFTKAGFKDVKLKRIG 258 (340)
T ss_pred EEEecCcchh-HHHHhhh-------------------------hhccCCCHHHHHHHHHHCCCeEEEEEEcC
Confidence 8765544321 1111000 00114578999999999999999988754
No 13
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.84 E-value=4e-19 Score=154.53 Aligned_cols=177 Identities=21% Similarity=0.329 Sum_probs=137.2
Q ss_pred hHHHHHHHhHhhHHHhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhccccccc
Q 036563 42 SQLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDL 121 (288)
Q Consensus 42 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~ 121 (288)
++.+.+.|++.+..|+... ..++...+.+.+.+...++.+|||+|||+|.++..+.+.
T Consensus 6 k~~i~~~F~~aa~~Y~~~~-----~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~----------------- 63 (251)
T PRK10258 6 KQAIAAAFGRAAAHYEQHA-----ELQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER----------------- 63 (251)
T ss_pred HHHHHHHHHHHHHhHhHHH-----HHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc-----------------
Confidence 5678899999999998643 345666677778887666789999999999998877654
Q ss_pred CCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCc
Q 036563 122 QEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGG 201 (288)
Q Consensus 122 ~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG 201 (288)
+.+++++|+|+.|++.++++.. ...++.+|++.+++++++||+|+++.++++.+++..++.++.++|+|||
T Consensus 64 --~~~v~~~D~s~~~l~~a~~~~~-------~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG 134 (251)
T PRK10258 64 --GSQVTALDLSPPMLAQARQKDA-------ADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGG 134 (251)
T ss_pred --CCeEEEEECCHHHHHHHHhhCC-------CCCEEEcCcccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCe
Confidence 3799999999999999987642 3467889999888888899999999999999999999999999999999
Q ss_pred EEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcE
Q 036563 202 RFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQK 269 (288)
Q Consensus 202 ~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 269 (288)
.+++..+.....+.+...+.... . . .....+++.+++.++|+..|+..
T Consensus 135 ~l~~~~~~~~~~~el~~~~~~~~--------~----~--------~~~~~~~~~~~l~~~l~~~~~~~ 182 (251)
T PRK10258 135 VVAFTTLVQGSLPELHQAWQAVD--------E----R--------PHANRFLPPDAIEQALNGWRYQH 182 (251)
T ss_pred EEEEEeCCCCchHHHHHHHHHhc--------c----C--------CccccCCCHHHHHHHHHhCCcee
Confidence 99987776554333333222110 0 0 01123668899999999888763
No 14
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.83 E-value=2e-19 Score=157.32 Aligned_cols=162 Identities=20% Similarity=0.292 Sum_probs=126.2
Q ss_pred HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 72 ~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
.+.++..+...++.+|||||||+|..+..++... ..+++++|+++.|++.++++....
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~------------------~~~v~giD~s~~~~~~a~~~~~~~---- 98 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKY------------------GAHVHGVDICEKMVNIAKLRNSDK---- 98 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc------------------CCEEEEEECCHHHHHHHHHHcCcC----
Confidence 3567777888888999999999999998887754 379999999999999999876542
Q ss_pred CceEEEEcccccCCCCCCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccc
Q 036563 152 KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIP 229 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 229 (288)
.++.+..+|+...++++++||+|++..+++|++ +...++++++++|||||.+++.++..............+.
T Consensus 99 ~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~----- 173 (263)
T PTZ00098 99 NKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYI----- 173 (263)
T ss_pred CceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHH-----
Confidence 579999999988888888999999998888875 7889999999999999999998875543211111111110
Q ss_pred cccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 230 AIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
......+.+.+++.++|+++||++++..+..
T Consensus 174 ----------------~~~~~~~~~~~~~~~~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 174 ----------------KKRKYTLIPIQEYGDLIKSCNFQNVVAKDIS 204 (263)
T ss_pred ----------------HhcCCCCCCHHHHHHHHHHCCCCeeeEEeCc
Confidence 0001124588999999999999999988754
No 15
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.83 E-value=2.8e-19 Score=155.89 Aligned_cols=170 Identities=16% Similarity=0.271 Sum_probs=121.6
Q ss_pred HHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 74 RLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 74 ~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
.+++.+. .++.+|||+|||+|.++..+++.. .+++++|+|+.|++.++++....++. ++
T Consensus 36 ~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g-------------------~~v~~vD~s~~~l~~a~~~~~~~g~~-~~ 94 (255)
T PRK11036 36 RLLAELP-PRPLRVLDAGGGEGQTAIKLAELG-------------------HQVILCDLSAEMIQRAKQAAEAKGVS-DN 94 (255)
T ss_pred HHHHhcC-CCCCEEEEeCCCchHHHHHHHHcC-------------------CEEEEEECCHHHHHHHHHHHHhcCCc-cc
Confidence 3445554 446799999999999999998863 79999999999999999998877765 67
Q ss_pred eEEEEcccccCC-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccccccc
Q 036563 154 LLWVEGDAEALC-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIG 232 (288)
Q Consensus 154 v~~~~~d~~~~~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (288)
++++.+|+.+++ +.+++||+|++..+++++.++..+++++.++|+|||.++++..... .......... ......
T Consensus 95 v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~-~~~~~~~~~~----~~~~~~ 169 (255)
T PRK11036 95 MQFIHCAAQDIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNAN-GLLMHNMVAG----NFDYVQ 169 (255)
T ss_pred eEEEEcCHHHHhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECcc-HHHHHHHHcc----ChHHHH
Confidence 899999987763 5567899999999999999999999999999999999998755542 1111111100 000000
Q ss_pred -ccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEE
Q 036563 233 -ELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYEN 274 (288)
Q Consensus 233 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 274 (288)
.+........ ......+++++.++|+++||+++...-
T Consensus 170 ~~~~~~~~~~~-----~p~~~~~~~~l~~~l~~aGf~~~~~~g 207 (255)
T PRK11036 170 AGMPKRKKRTL-----SPDYPLDPEQVYQWLEEAGWQIMGKTG 207 (255)
T ss_pred hcCccccccCC-----CCCCCCCHHHHHHHHHHCCCeEeeeee
Confidence 0000000000 001245889999999999999887653
No 16
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.82 E-value=7.9e-20 Score=158.54 Aligned_cols=172 Identities=19% Similarity=0.267 Sum_probs=119.6
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||+|||+|..+..+++... .++.+++++|+|+.|++.++++....+.. .+++++.+|+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~---------------~~~~~v~gvD~S~~ml~~A~~~~~~~~~~-~~v~~~~~d~ 118 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIH---------------HDNCKIIAIDNSPAMIERCRRHIDAYKAP-TPVDVIEGDI 118 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcC---------------CCCCeEEEEeCCHHHHHHHHHHHHhcCCC-CCeEEEeCCh
Confidence 3567999999999999988877431 04689999999999999999998876654 5799999999
Q ss_pred ccCCCCCCCeeEEEeccccccccC--HHHHHHHHHhhccCCcEEEEEeccCCChHHHHH-HHHHhhccccccccccccCC
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCLELSHVDIPVFKE-LYDYYSFSVIPAIGELVAGD 238 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 238 (288)
...+++ .+|+|+++.++|++++ ...+++++++.|+|||.+++.+......+.... ....+. ......|. ....
T Consensus 119 ~~~~~~--~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~-~~~~~~g~-s~~e 194 (247)
T PRK15451 119 RDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHH-DFKRANGY-SELE 194 (247)
T ss_pred hhCCCC--CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHH-HHHHHcCC-CHHH
Confidence 887654 4999999999998864 467999999999999999998865544333322 222111 00000110 0000
Q ss_pred CcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEE
Q 036563 239 RGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYE 273 (288)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 273 (288)
-.......+.+....+.++..++|+++||+.++..
T Consensus 195 i~~~~~~~~~~~~~~~~~~~~~~L~~aGF~~v~~~ 229 (247)
T PRK15451 195 ISQKRSMLENVMLTDSVETHKARLHKAGFEHSELW 229 (247)
T ss_pred HHHHHHHHHhhcccCCHHHHHHHHHHcCchhHHHH
Confidence 00001111223334689999999999999876653
No 17
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.81 E-value=2.5e-18 Score=149.85 Aligned_cols=165 Identities=15% Similarity=0.164 Sum_probs=115.8
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..+++.+...++.+|||+|||+|.++..+++.. ++.+++++|+|+.|++.+++.
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~-----------------p~~~v~gvD~s~~~~~~a~~~--------- 72 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRW-----------------PGAVIEALDSSPEMVAAARER--------- 72 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHC-----------------CCCEEEEEECCHHHHHHHHhc---------
Confidence 346677777778899999999999999998876 468999999999999988652
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccccccc
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIG 232 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (288)
++.+..+|+..+. ++++||+|+++.++|+++++..+++++.++|+|||.+++........+.... ....... ....
T Consensus 73 ~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-~~~~~~~--~~w~ 148 (255)
T PRK14103 73 GVDARTGDVRDWK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAA-VRALARR--EPWA 148 (255)
T ss_pred CCcEEEcChhhCC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHH-HHHHhcc--Cchh
Confidence 5788999988764 4568999999999999999999999999999999999976433212111111 1111000 0000
Q ss_pred ccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEE
Q 036563 233 ELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYE 273 (288)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 273 (288)
....... + .....+.+.+++.++|+++||++...+
T Consensus 149 ~~~~~~~--~----~~~~~~~~~~~~~~~l~~aGf~v~~~~ 183 (255)
T PRK14103 149 KLLRDIP--F----RVGAVVQTPAGYAELLTDAGCKVDAWE 183 (255)
T ss_pred HHhcccc--c----ccCcCCCCHHHHHHHHHhCCCeEEEEe
Confidence 0000000 0 001124588999999999999865443
No 18
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.79 E-value=7.5e-19 Score=151.72 Aligned_cols=181 Identities=15% Similarity=0.112 Sum_probs=123.9
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||+|||+|..+..+++.... ++.+++++|+|+.|++.+++++...+.. .++.++.+|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~---------------p~~~v~gvD~s~~ml~~a~~~~~~~~~~-~~v~~~~~d~ 115 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQ---------------PNVKIIGIDNSQPMVERCRQHIAAYHSE-IPVEILCNDI 115 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCC---------------CCCeEEEEeCCHHHHHHHHHHHHhcCCC-CCeEEEECCh
Confidence 35679999999999999999887420 4689999999999999999988765443 5789999999
Q ss_pred ccCCCCCCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEeccCCChHHHHH-HHHHhhccccccccccccCC
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKE-LYDYYSFSVIPAIGELVAGD 238 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 238 (288)
...+++ .+|+|++..++++++ +...+++++.+.|+|||.+++.+...+....... +...+.. ....-+ ..
T Consensus 116 ~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~-~~~~~g----~~ 188 (239)
T TIGR00740 116 RHVEIK--NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQ-FKRANG----YS 188 (239)
T ss_pred hhCCCC--CCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHH-HHHHcC----CC
Confidence 887754 489999999999886 4578999999999999999998876544332222 1111110 000000 00
Q ss_pred Ccch---hhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEee
Q 036563 239 RGSY---QYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGL 286 (288)
Q Consensus 239 ~~~~---~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~ 286 (288)
.... ........+..+.+++.++++++||+.++..... +.++.|.++
T Consensus 189 ~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGF~~~~~~~~~-~~~~~~~~~ 238 (239)
T TIGR00740 189 ELEISQKRTALENVMRTDSIETHKARLKNVGFSHVELWFQC-FNFGSLVAV 238 (239)
T ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHHcCCchHHHHHHH-HhHhHHhee
Confidence 0001 0111123346799999999999999977654332 333444444
No 19
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.79 E-value=5.2e-18 Score=160.56 Aligned_cols=161 Identities=23% Similarity=0.331 Sum_probs=124.7
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+++.+...++.+|||||||+|..+..+++.. +.+++++|+|+.+++.++++..... .
T Consensus 256 e~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~------------------~~~v~gvDiS~~~l~~A~~~~~~~~---~ 314 (475)
T PLN02336 256 KEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF------------------DVHVVGIDLSVNMISFALERAIGRK---C 314 (475)
T ss_pred HHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc------------------CCEEEEEECCHHHHHHHHHHhhcCC---C
Confidence 456666666677899999999999998888775 3799999999999999988764332 4
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccccccc
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIG 232 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (288)
++.+..+|+...++++++||+|++..+++|++++..++++++++|+|||.+++.++................
T Consensus 315 ~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-------- 386 (475)
T PLN02336 315 SVEFEVADCTKKTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIK-------- 386 (475)
T ss_pred ceEEEEcCcccCCCCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHH--------
Confidence 789999999888877788999999999999999999999999999999999988765432211111111110
Q ss_pred ccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 233 ELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
.....+++.+++.++++++||+++..+.+.
T Consensus 387 --------------~~g~~~~~~~~~~~~l~~aGF~~i~~~d~~ 416 (475)
T PLN02336 387 --------------QRGYDLHDVQAYGQMLKDAGFDDVIAEDRT 416 (475)
T ss_pred --------------hcCCCCCCHHHHHHHHHHCCCeeeeeecch
Confidence 000124578899999999999999876643
No 20
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.78 E-value=2.4e-17 Score=144.28 Aligned_cols=166 Identities=22% Similarity=0.241 Sum_probs=117.3
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+.+.+..+++.+|||||||.|.++..+++..+ ++|+++.+|++..+.+++++...++. +
T Consensus 52 ~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g------------------~~v~gitlS~~Q~~~a~~~~~~~gl~-~ 112 (273)
T PF02353_consen 52 DLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYG------------------CHVTGITLSEEQAEYARERIREAGLE-D 112 (273)
T ss_dssp HHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--------------------EEEEEES-HHHHHHHHHHHHCSTSS-S
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcC------------------cEEEEEECCHHHHHHHHHHHHhcCCC-C
Confidence 5677888889999999999999999999999974 89999999999999999999999887 7
Q ss_pred ceEEEEcccccCCCCCCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccccc
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPA 230 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (288)
++.+...|..+++. +||.|++..+++|+. +...+++++.++|+|||.+++..++.+......... ...+.
T Consensus 113 ~v~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~-----~~~~~ 184 (273)
T PF02353_consen 113 RVEVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERR-----SSSDF 184 (273)
T ss_dssp TEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTT-----CCCHH
T ss_pred ceEEEEeeccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcC-----CCceE
Confidence 89999999887643 899999999999994 678999999999999999998777765443322000 00000
Q ss_pred ccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 231 IGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
+.+.+.... .+++..++...++++||++..+.++.
T Consensus 185 i~kyiFPgg-----------~lps~~~~~~~~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 185 IRKYIFPGG-----------YLPSLSEILRAAEDAGLEVEDVENLG 219 (273)
T ss_dssp HHHHTSTTS--------------BHHHHHHHHHHTT-EEEEEEE-H
T ss_pred EEEeeCCCC-----------CCCCHHHHHHHHhcCCEEEEEEEEcC
Confidence 111111111 15578889999999999999888764
No 21
>PRK08317 hypothetical protein; Provisional
Probab=99.78 E-value=3.7e-17 Score=140.43 Aligned_cols=166 Identities=28% Similarity=0.420 Sum_probs=125.7
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
..+++.+.+.+...++.+|||+|||+|.++..+++..+ +..+++++|+++.+++.++++.....
T Consensus 5 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~----------------~~~~v~~~d~~~~~~~~a~~~~~~~~ 68 (241)
T PRK08317 5 RRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVG----------------PEGRVVGIDRSEAMLALAKERAAGLG 68 (241)
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcC----------------CCcEEEEEeCCHHHHHHHHHHhhCCC
Confidence 34456677778888889999999999999999988763 45799999999999999988732221
Q ss_pred CCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCC-------ChHHHHHHHH
Q 036563 149 YPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHV-------DIPVFKELYD 221 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~-------~~~~~~~~~~ 221 (288)
.++.+...|+...++++++||+|++..+++++.++..+++++.++|+|||.+++.+.... ..........
T Consensus 69 ---~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (241)
T PRK08317 69 ---PNVEFVRGDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILN 145 (241)
T ss_pred ---CceEEEecccccCCCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHH
Confidence 578999999988777778999999999999999999999999999999999998765321 1112222222
Q ss_pred HhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEe
Q 036563 222 YYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275 (288)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 275 (288)
.+.. ..........+.++|+++||.++.....
T Consensus 146 ~~~~----------------------~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 177 (241)
T PRK08317 146 FWSD----------------------HFADPWLGRRLPGLFREAGLTDIEVEPY 177 (241)
T ss_pred HHHh----------------------cCCCCcHHHHHHHHHHHcCCCceeEEEE
Confidence 2110 0011224568899999999998877654
No 22
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.78 E-value=9.4e-18 Score=134.85 Aligned_cols=108 Identities=29% Similarity=0.410 Sum_probs=96.1
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
.+.+|||+|||+|.++..+++... +..+++++|+++.|++.+++.+...+.+ ++++..+|+.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~----------------~~~~i~gvD~s~~~i~~a~~~~~~~~~~--ni~~~~~d~~ 64 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELN----------------PGAKIIGVDISEEMIEYAKKRAKELGLD--NIEFIQGDIE 64 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHST----------------TTSEEEEEESSHHHHHHHHHHHHHTTST--TEEEEESBTT
T ss_pred CCCEEEEecCcCcHHHHHHHHhcC----------------CCCEEEEEECcHHHHHHhhccccccccc--ccceEEeehh
Confidence 467999999999999999996543 5689999999999999999998888774 8999999999
Q ss_pred cCC--CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEecc
Q 036563 163 ALC--FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 163 ~~~--~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
+++ ++ +.||+|++..+++++.++..+++++.+.|+++|.+++.+..
T Consensus 65 ~l~~~~~-~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 65 DLPQELE-EKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp CGCGCSS-TTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ccccccC-CCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 876 44 68999999999999999999999999999999999988776
No 23
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.77 E-value=3.3e-17 Score=145.80 Aligned_cols=163 Identities=17% Similarity=0.111 Sum_probs=115.5
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+...+...++.+|||+|||+|.++..++... ...++|+|+|+.|+..++......... .
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g------------------~~~v~GiDpS~~ml~q~~~~~~~~~~~-~ 171 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHG------------------AKSLVGIDPTVLFLCQFEAVRKLLDND-K 171 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcC------------------CCEEEEEcCCHHHHHHHHHHHHHhccC-C
Confidence 345566666778899999999999988887763 257999999999987654322211111 4
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChH-HHHHHHHHhhccccccc
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIP-VFKELYDYYSFSVIPAI 231 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~-~~~~~~~~~~~~~~~~~ 231 (288)
++.+..+++++++.. .+||+|++..+++|..++..+|+++++.|+|||.+++.+....... ........
T Consensus 172 ~v~~~~~~ie~lp~~-~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~r--------- 241 (314)
T TIGR00452 172 RAILEPLGIEQLHEL-YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDR--------- 241 (314)
T ss_pred CeEEEECCHHHCCCC-CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHH---------
Confidence 678888888887654 4799999999999999999999999999999999997654322110 00000000
Q ss_pred cccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEe
Q 036563 232 GELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275 (288)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 275 (288)
|... ..+..+++..++.++|+++||+.+++...
T Consensus 242 ----------y~k~-~nv~flpS~~~L~~~L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 242 ----------YAKM-KNVYFIPSVSALKNWLEKVGFENFRILDV 274 (314)
T ss_pred ----------HHhc-cccccCCCHHHHHHHHHHCCCeEEEEEec
Confidence 0000 00112458899999999999999988654
No 24
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.77 E-value=1.3e-17 Score=149.72 Aligned_cols=164 Identities=19% Similarity=0.134 Sum_probs=118.3
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+...++..++.+|||||||+|.++..++.... ..|+|+|+|+.++..++......+.. .
T Consensus 112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~------------------~~V~GiD~S~~~l~q~~a~~~~~~~~-~ 172 (322)
T PRK15068 112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGA------------------KLVVGIDPSQLFLCQFEAVRKLLGND-Q 172 (322)
T ss_pred HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCC------------------CEEEEEcCCHHHHHHHHHHHHhcCCC-C
Confidence 3455566666778999999999999999888742 46999999999987654432222111 5
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHH-HHHHHhhccccccc
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFK-ELYDYYSFSVIPAI 231 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~-~~~~~~~~~~~~~~ 231 (288)
++.+..+|++.+++ .++||+|++..+++|..++..+|+++++.|+|||.+++.+.......... .....+.
T Consensus 173 ~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~------- 244 (322)
T PRK15068 173 RAHLLPLGIEQLPA-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYA------- 244 (322)
T ss_pred CeEEEeCCHHHCCC-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHh-------
Confidence 79999999998887 67899999999999999999999999999999999987544322111000 0000010
Q ss_pred cccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 232 GELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
.. .....+++.+++.++|+++||+++++....
T Consensus 245 ------------~~-~~~~~lps~~~l~~~L~~aGF~~i~~~~~~ 276 (322)
T PRK15068 245 ------------KM-RNVYFIPSVPALKNWLERAGFKDVRIVDVS 276 (322)
T ss_pred ------------cC-ccceeCCCHHHHHHHHHHcCCceEEEEeCC
Confidence 00 001124588999999999999999887653
No 25
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.77 E-value=5.6e-18 Score=136.71 Aligned_cols=150 Identities=24% Similarity=0.330 Sum_probs=106.4
Q ss_pred HHHHHhhcC-CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 72 KDRLVSKLN-PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 72 ~~~~~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
.+.+....+ ..++.+|||+|||+|.++..+.+. +.+++++|+++.+++. .
T Consensus 10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-------------------~~~~~g~D~~~~~~~~-------~--- 60 (161)
T PF13489_consen 10 ADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR-------------------GFEVTGVDISPQMIEK-------R--- 60 (161)
T ss_dssp HHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT-------------------TSEEEEEESSHHHHHH-------T---
T ss_pred HHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh-------------------CCEEEEEECCHHHHhh-------h---
Confidence 333444443 466789999999999999988555 2699999999999887 1
Q ss_pred CCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccccc
Q 036563 151 DKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPA 230 (288)
Q Consensus 151 ~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (288)
++.....+......++++||+|++..+++|++++..+|+++.++|+|||++++.+..... . .......+...
T Consensus 61 --~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~-~-~~~~~~~~~~~---- 132 (161)
T PF13489_consen 61 --NVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDD-P-SPRSFLKWRYD---- 132 (161)
T ss_dssp --TSEEEEEECHTHHCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTS-H-HHHHHHHCCGT----
T ss_pred --hhhhhhhhhhhhhccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcc-h-hhhHHHhcCCc----
Confidence 233333333334456779999999999999999999999999999999999988776533 1 11111211100
Q ss_pred ccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEE
Q 036563 231 IGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVE 271 (288)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~ 271 (288)
........+++.+++.++++++||++++
T Consensus 133 -------------~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 133 -------------RPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp -------------CHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred -------------CccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 0000112356899999999999999886
No 26
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.77 E-value=3.6e-17 Score=143.90 Aligned_cols=157 Identities=26% Similarity=0.366 Sum_probs=119.9
Q ss_pred CCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEc
Q 036563 80 NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEG 159 (288)
Q Consensus 80 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~ 159 (288)
...++.+|||+|||+|..+..++...+ +..+++++|+++.|++.++++....++ +++.+..+
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g----------------~~~~v~gvD~s~~~l~~A~~~~~~~g~--~~v~~~~~ 135 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVG----------------PTGKVIGVDMTPEMLAKARANARKAGY--TNVEFRLG 135 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhC----------------CCCEEEEECCCHHHHHHHHHHHHHcCC--CCEEEEEc
Confidence 456788999999999998887777654 456899999999999999998877666 47899999
Q ss_pred ccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCC
Q 036563 160 DAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDR 239 (288)
Q Consensus 160 d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (288)
|++.+++++++||+|+++.++++.++...+++++.++|||||++++.+........ ........ ..+.
T Consensus 136 d~~~l~~~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~-~~~~~~~~-----~~~~------ 203 (272)
T PRK11873 136 EIEALPVADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELP-EEIRNDAE-----LYAG------ 203 (272)
T ss_pred chhhCCCCCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCC-HHHHHhHH-----HHhc------
Confidence 99988888889999999999999999999999999999999999997765432111 11111000 0000
Q ss_pred cchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEE
Q 036563 240 GSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYEN 274 (288)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 274 (288)
......+.+++.++|+++||..+++..
T Consensus 204 --------~~~~~~~~~e~~~~l~~aGf~~v~i~~ 230 (272)
T PRK11873 204 --------CVAGALQEEEYLAMLAEAGFVDITIQP 230 (272)
T ss_pred --------cccCCCCHHHHHHHHHHCCCCceEEEe
Confidence 001133678899999999999887643
No 27
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.76 E-value=4.1e-17 Score=132.77 Aligned_cols=169 Identities=20% Similarity=0.178 Sum_probs=128.8
Q ss_pred hcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceE-E
Q 036563 78 KLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLL-W 156 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~-~ 156 (288)
.+.......|||+|||||..-...-.. |...++++|++++|.+.+.+.+.+... .++. |
T Consensus 71 ~~gk~~K~~vLEvgcGtG~Nfkfy~~~------------------p~~svt~lDpn~~mee~~~ks~~E~k~--~~~~~f 130 (252)
T KOG4300|consen 71 FLGKSGKGDVLEVGCGTGANFKFYPWK------------------PINSVTCLDPNEKMEEIADKSAAEKKP--LQVERF 130 (252)
T ss_pred HhcccCccceEEecccCCCCcccccCC------------------CCceEEEeCCcHHHHHHHHHHHhhccC--cceEEE
Confidence 344444456899999999764332222 679999999999999999999887743 4666 8
Q ss_pred EEcccccCC-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccc
Q 036563 157 VEGDAEALC-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELV 235 (288)
Q Consensus 157 ~~~d~~~~~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (288)
+.++.++++ +++.++|.|++.+++....++.+.|+++.++|+|||.++++|.......++..+.....-......
T Consensus 131 vva~ge~l~~l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~---- 206 (252)
T KOG4300|consen 131 VVADGENLPQLADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLE---- 206 (252)
T ss_pred EeechhcCcccccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhhee----
Confidence 899999987 788999999999999999999999999999999999999999999888888777776541111000
Q ss_pred cCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEE
Q 036563 236 AGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIH 283 (288)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~ 283 (288)
.+.. -.+.+ ..+.|+++.|+.++.+....|.-..+
T Consensus 207 -~dGC-----------~ltrd-~~e~Leda~f~~~~~kr~~~~ttw~~ 241 (252)
T KOG4300|consen 207 -SDGC-----------VLTRD-TGELLEDAEFSIDSCKRFNFGTTWVI 241 (252)
T ss_pred -ccce-----------EEehh-HHHHhhhcccccchhhcccCCceEEE
Confidence 0111 11333 44689999999999988877755443
No 28
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.76 E-value=7.4e-18 Score=141.20 Aligned_cols=160 Identities=19% Similarity=0.249 Sum_probs=123.8
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
-++++|||+|||.|.++..+++. ++.|+++|+++.+++.|+.+..+.++ ++.+....+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~-------------------Ga~VtgiD~se~~I~~Ak~ha~e~gv---~i~y~~~~~ 115 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL-------------------GASVTGIDASEKPIEVAKLHALESGV---NIDYRQATV 115 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC-------------------CCeeEEecCChHHHHHHHHhhhhccc---cccchhhhH
Confidence 46889999999999999999987 48999999999999999999888765 467888888
Q ss_pred ccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHH-HHhhccccccccccccCCCc
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELY-DYYSFSVIPAIGELVAGDRG 240 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 240 (288)
+++....++||+|+|..+++|++++..+++.|.+++||||.+++..........+..+. ..+. ..++.....
T Consensus 116 edl~~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~v-------l~~vP~gTH 188 (243)
T COG2227 116 EDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYV-------LRIVPKGTH 188 (243)
T ss_pred HHHHhcCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHH-------HHhcCCcch
Confidence 87766557999999999999999999999999999999999998766654333332222 2221 122222211
Q ss_pred chhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeC
Q 036563 241 SYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVG 277 (288)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~ 277 (288)
. ...+..++++..++..+|+.+....-+..
T Consensus 189 ~-------~~k~irp~El~~~~~~~~~~~~~~~g~~y 218 (243)
T COG2227 189 D-------YRKFIKPAELIRWLLGANLKIIDRKGLTY 218 (243)
T ss_pred h-------HHHhcCHHHHHHhcccCCceEEeecceEe
Confidence 1 23466789999999999999888765544
No 29
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.76 E-value=3.2e-17 Score=141.94 Aligned_cols=161 Identities=22% Similarity=0.320 Sum_probs=131.9
Q ss_pred HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 72 ~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
.+.+.+.+...||++|||||||.|.++..++++.+ .+|+|+++|+++...+++++...++.
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~------------------v~V~GvTlS~~Q~~~~~~r~~~~gl~- 121 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYG------------------VTVVGVTLSEEQLAYAEKRIAARGLE- 121 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcC------------------CEEEEeeCCHHHHHHHHHHHHHcCCC-
Confidence 36778899999999999999999999999999974 89999999999999999999999987
Q ss_pred CceEEEEcccccCCCCCCCeeEEEeccccccccC--HHHHHHHHHhhccCCcEEEEEeccCCChHHH--HHHHHHhhccc
Q 036563 152 KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCLELSHVDIPVF--KELYDYYSFSV 227 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~--~~~~~~~~~~~ 227 (288)
.++++...|..++. +.||-|++...++|+.. ...+++.+.+.|+|||.+++...+.++.... ..+...+
T Consensus 122 ~~v~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~y---- 194 (283)
T COG2230 122 DNVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKY---- 194 (283)
T ss_pred cccEEEeccccccc---cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHh----
Confidence 78999999987764 34999999999999964 8899999999999999999988877754431 1111111
Q ss_pred cccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 228 IPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
+..+. .+++..++.+..+++||.+...+++.
T Consensus 195 -------iFPgG-----------~lPs~~~i~~~~~~~~~~v~~~~~~~ 225 (283)
T COG2230 195 -------IFPGG-----------ELPSISEILELASEAGFVVLDVESLR 225 (283)
T ss_pred -------CCCCC-----------cCCCHHHHHHHHHhcCcEEehHhhhc
Confidence 11111 15678889899999999998877654
No 30
>PRK06202 hypothetical protein; Provisional
Probab=99.76 E-value=1.1e-16 Score=137.53 Aligned_cols=177 Identities=16% Similarity=0.138 Sum_probs=120.3
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
..+.+.+...+...++.+|||+|||+|.++..+++..... .+..+++++|+++.|++.++++...
T Consensus 46 ~~~~~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~-------------g~~~~v~gvD~s~~~l~~a~~~~~~-- 110 (232)
T PRK06202 46 GLYRRLLRPALSADRPLTLLDIGCGGGDLAIDLARWARRD-------------GLRLEVTAIDPDPRAVAFARANPRR-- 110 (232)
T ss_pred HHHHHHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhC-------------CCCcEEEEEcCCHHHHHHHHhcccc--
Confidence 3344444344444566799999999999998887654200 0246899999999999999887543
Q ss_pred CCCCceEEEEcccccCCCCCCCeeEEEeccccccccCH--HHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcc
Q 036563 149 YPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHI--EKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFS 226 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~ 226 (288)
.++.+...+...++.++++||+|+++.++||+++. ..+++++.++++ |.+++.++..+...........
T Consensus 111 ---~~~~~~~~~~~~l~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~---- 181 (232)
T PRK06202 111 ---PGVTFRQAVSDELVAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGT---- 181 (232)
T ss_pred ---CCCeEEEEecccccccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHH----
Confidence 34666666666666667789999999999999874 579999999998 6666666666532221111111
Q ss_pred ccccc-cccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeC
Q 036563 227 VIPAI-GELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVG 277 (288)
Q Consensus 227 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~ 277 (288)
.+.. +.+...+ ...++.++++.+++.+++++ ||++.....+..
T Consensus 182 -~~~~~~~~~~~d------~~~s~~~~~~~~el~~ll~~-Gf~~~~~~~~~~ 225 (232)
T PRK06202 182 -RLLSRSSFVHTD------GLLSVRRSYTPAELAALAPQ-GWRVERQWPFRY 225 (232)
T ss_pred -HHhccCceeecc------chHHHHhhcCHHHHHHHhhC-CCeEEeccceee
Confidence 1111 1111111 13566778899999999999 999888776644
No 31
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.75 E-value=8.9e-17 Score=138.12 Aligned_cols=142 Identities=23% Similarity=0.363 Sum_probs=110.8
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
.+.+|||+|||+|.++..+++.. +..+++++|+++.+++.++++.. +++.++.+|+.
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~-----------------~~~~~~~~D~~~~~~~~~~~~~~------~~~~~~~~d~~ 90 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRF-----------------PQAEFIALDISAGMLAQAKTKLS------ENVQFICGDAE 90 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhC-----------------CCCcEEEEeChHHHHHHHHHhcC------CCCeEEecchh
Confidence 35789999999999999998886 45789999999999998887653 36889999999
Q ss_pred cCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcch
Q 036563 163 ALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSY 242 (288)
Q Consensus 163 ~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (288)
..++++++||+|++..++++..++..++.++.++|+|||.+++.++..............
T Consensus 91 ~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~-------------------- 150 (240)
T TIGR02072 91 KLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQ-------------------- 150 (240)
T ss_pred hCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHH--------------------
Confidence 888778899999999999999999999999999999999999876655432222221110
Q ss_pred hhhHHHHhcCCChHHHHHHHHHcCCcEEEEE
Q 036563 243 QYLVESVRRFPPQEKFAAMISDAGFQKVEYE 273 (288)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 273 (288)
....+.+.+++.++++++ |..+.+.
T Consensus 151 -----~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 151 -----HGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred -----hccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 011245677788888877 7766554
No 32
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.75 E-value=1.9e-17 Score=141.44 Aligned_cols=148 Identities=17% Similarity=0.190 Sum_probs=118.4
Q ss_pred eEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCC
Q 036563 86 KHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC 165 (288)
Q Consensus 86 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~ 165 (288)
+|||||||+|..+..+++.. +..+++++|+|+++++.++++....++. .++++...|+...+
T Consensus 2 ~vLDiGcG~G~~~~~la~~~-----------------~~~~v~gid~s~~~~~~a~~~~~~~gl~-~~i~~~~~d~~~~~ 63 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERH-----------------PHLQLHGYTISPEQAEVGRERIRALGLQ-GRIRIFYRDSAKDP 63 (224)
T ss_pred eEEEECCCCCHHHHHHHHHC-----------------CCCEEEEEECCHHHHHHHHHHHHhcCCC-cceEEEecccccCC
Confidence 79999999999999998876 3578999999999999999998887776 68899999986655
Q ss_pred CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhh
Q 036563 166 FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYL 245 (288)
Q Consensus 166 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (288)
++ ++||+|++..+++|+.+...+++++.++|+|||.+++.+........ ... ....
T Consensus 64 ~~-~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---------------~~~---~~~~----- 119 (224)
T smart00828 64 FP-DTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSA---------------IEH---EETT----- 119 (224)
T ss_pred CC-CCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCcc---------------ccc---cccc-----
Confidence 54 48999999999999999999999999999999999987754321000 000 0000
Q ss_pred HHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCe
Q 036563 246 VESVRRFPPQEKFAAMISDAGFQKVEYENLVGGV 279 (288)
Q Consensus 246 ~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~ 279 (288)
..+++..+|.++++++||++++..++...+
T Consensus 120 ----~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~~ 149 (224)
T smart00828 120 ----SYLVTREEWAELLARNNLRVVEGVDASLEI 149 (224)
T ss_pred ----cccCCHHHHHHHHHHCCCeEEEeEECcHhH
Confidence 114588999999999999999988876543
No 33
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.74 E-value=2.7e-17 Score=120.71 Aligned_cols=95 Identities=34% Similarity=0.465 Sum_probs=83.7
Q ss_pred EEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCC
Q 036563 88 LDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFE 167 (288)
Q Consensus 88 LDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~ 167 (288)
||+|||+|..+..+++.. ..+++++|+++++++.++++.... ++.+...|+..++++
T Consensus 1 LdiG~G~G~~~~~l~~~~------------------~~~v~~~D~~~~~~~~~~~~~~~~-----~~~~~~~d~~~l~~~ 57 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRG------------------GASVTGIDISEEMLEQARKRLKNE-----GVSFRQGDAEDLPFP 57 (95)
T ss_dssp EEET-TTSHHHHHHHHTT------------------TCEEEEEES-HHHHHHHHHHTTTS-----TEEEEESBTTSSSS-
T ss_pred CEecCcCCHHHHHHHhcc------------------CCEEEEEeCCHHHHHHHHhccccc-----CchheeehHHhCccc
Confidence 899999999999999982 489999999999999999987653 567999999999999
Q ss_pred CCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 168 DSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 168 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
+++||+|++..++++++++.++++++.|+|||||++++
T Consensus 58 ~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 58 DNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 99999999999999999999999999999999999975
No 34
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.74 E-value=3.3e-16 Score=136.74 Aligned_cols=111 Identities=16% Similarity=0.172 Sum_probs=95.9
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
..+.++..+...++.+|||+|||+|.++..+++.+ +..+++++|+|+.|++.++++.
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~-----------------~~~~v~gvD~s~~~i~~a~~~~------ 75 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGNSTELLVERW-----------------PAARITGIDSSPAMLAEARSRL------ 75 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHC-----------------CCCEEEEEECCHHHHHHHHHhC------
Confidence 34566677777778899999999999999998886 4689999999999999998764
Q ss_pred CCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 151 DKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 151 ~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+++.+..+|+..+. +..+||+|+++.+++++++...+++++.+.|+|||.+++.
T Consensus 76 -~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 76 -PDCQFVEADIASWQ-PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred -CCCeEEECchhccC-CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 46888999987664 3458999999999999999999999999999999999875
No 35
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.73 E-value=1.5e-16 Score=135.51 Aligned_cols=169 Identities=20% Similarity=0.262 Sum_probs=119.9
Q ss_pred HHHHHHHhhcC--CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc
Q 036563 70 LWKDRLVSKLN--PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER 147 (288)
Q Consensus 70 ~~~~~~~~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 147 (288)
.+++.+.+.+. ..++.+|||+|||+|.++..+++.. .+++++|++++|+..++++....
T Consensus 40 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~-------------------~~v~gvD~s~~~i~~a~~~~~~~ 100 (219)
T TIGR02021 40 AMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRG-------------------AIVKAVDISEQMVQMARNRAQGR 100 (219)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCC-------------------CEEEEEECCHHHHHHHHHHHHhc
Confidence 45566666665 4567899999999999999987752 68999999999999999988766
Q ss_pred CCCCCceEEEEcccccCCCCCCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhc
Q 036563 148 GYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSF 225 (288)
Q Consensus 148 ~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~ 225 (288)
+.. .++.+..+|+...+ ++||+|++..++++++ +...+++++.+++++++.+.+. . ......... ..
T Consensus 101 ~~~-~~i~~~~~d~~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~---~-~~~~~~~~~-~~-- 169 (219)
T TIGR02021 101 DVA-GNVEFEVNDLLSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA---P-KTAWLAFLK-MI-- 169 (219)
T ss_pred CCC-CceEEEECChhhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC---C-CchHHHHHH-HH--
Confidence 543 47899999987765 6899999999988875 3567899999998877665542 1 122211111 10
Q ss_pred cccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCee
Q 036563 226 SVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVV 280 (288)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~ 280 (288)
...+....... ...+++.+++.++++++||+++.......|.+
T Consensus 170 ------~~~~~~~~~~~------~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~~~~ 212 (219)
T TIGR02021 170 ------GELFPGSSRAT------SAYLHPMTDLERALGELGWKIVREGLVSTGFY 212 (219)
T ss_pred ------HhhCcCccccc------ceEEecHHHHHHHHHHcCceeeeeecccccch
Confidence 00011100000 01245889999999999999999987777654
No 36
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.73 E-value=6.7e-17 Score=122.78 Aligned_cols=106 Identities=28% Similarity=0.443 Sum_probs=88.3
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc-
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA- 161 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~- 161 (288)
|+.+|||+|||+|.++..+++.. ++.+++++|+|+.+++.++++....+.. ++++++.+|+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-----------------~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~ 62 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-----------------PGARVVGVDISPEMLEIARERAAEEGLS-DRITFVQGDAE 62 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-----------------TTSEEEEEESSHHHHHHHHHHHHHTTTT-TTEEEEESCCH
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-----------------CCCEEEEEeCCHHHHHHHHHHHHhcCCC-CCeEEEECccc
Confidence 57899999999999999999965 4699999999999999999999655555 7999999999
Q ss_pred ccCCCCCCCeeEEEecc-ccccc---cCHHHHHHHHHhhccCCcEEEEEe
Q 036563 162 EALCFEDSTMDGYTIAF-GIRNV---THIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~-~l~~~---~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
..... .+.||+|++.. .+++. ++...+++++.+.|+|||++++.+
T Consensus 63 ~~~~~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 63 FDPDF-LEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGTTT-SSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCccc-CCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 33333 34699999999 54433 346789999999999999999754
No 37
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.72 E-value=6.9e-17 Score=135.42 Aligned_cols=148 Identities=16% Similarity=0.136 Sum_probs=111.6
Q ss_pred HHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 74 RLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 74 ~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
.+.+.+...++.+|||+|||+|..+..+++.. .+|+++|+|+.|++.+++.....++. +
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g-------------------~~V~gvD~S~~~i~~a~~~~~~~~~~--~ 79 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANG-------------------FDVTAWDKNPMSIANLERIKAAENLD--N 79 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHCC-------------------CEEEEEeCCHHHHHHHHHHHHHcCCC--c
Confidence 34555556667899999999999999998763 79999999999999999988777663 6
Q ss_pred eEEEEcccccCCCCCCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccc
Q 036563 154 LLWVEGDAEALCFEDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAI 231 (288)
Q Consensus 154 v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (288)
+.+...|+...+++ ++||+|+++.++++++ +...+++++.++|+|||++++.+...++... .
T Consensus 80 v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~-------~-------- 143 (197)
T PRK11207 80 LHTAVVDLNNLTFD-GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYP-------C-------- 143 (197)
T ss_pred ceEEecChhhCCcC-CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCC-------C--------
Confidence 88888998777654 5799999999998775 4678999999999999997665433221100 0
Q ss_pred cccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEE
Q 036563 232 GELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYEN 274 (288)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 274 (288)
. .+. ...++.+++.+.++ ||+++....
T Consensus 144 ~---~~~-----------~~~~~~~el~~~~~--~~~~~~~~~ 170 (197)
T PRK11207 144 T---VGF-----------PFAFKEGELRRYYE--GWEMVKYNE 170 (197)
T ss_pred C---CCC-----------CCccCHHHHHHHhC--CCeEEEeeC
Confidence 0 000 01347888888887 899888743
No 38
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.72 E-value=6.6e-16 Score=127.92 Aligned_cols=120 Identities=24% Similarity=0.323 Sum_probs=97.3
Q ss_pred hhhhhHHHHHHHHhhcC----CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHH
Q 036563 64 SGGLHRLWKDRLVSKLN----PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNV 139 (288)
Q Consensus 64 ~~~~~~~~~~~~~~~l~----~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~ 139 (288)
....++.|.+.+...+. .+++.+|||+|||+|..+..++... +..+++++|+++.|++.
T Consensus 22 ~~~~~~~~~~~~~d~l~l~~~l~~g~~VLDiGcGtG~~al~la~~~-----------------~~~~V~giD~s~~~l~~ 84 (187)
T PRK00107 22 IRDPEELWERHILDSLAIAPYLPGGERVLDVGSGAGFPGIPLAIAR-----------------PELKVTLVDSLGKKIAF 84 (187)
T ss_pred cCCHHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCHHHHHHHHHC-----------------CCCeEEEEeCcHHHHHH
Confidence 34445566655544331 2347899999999999999998865 46899999999999999
Q ss_pred HHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 140 GKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 140 a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
++++....+++ ++++..+|+.+++. .++||+|+++. ..++..+++.+.+.|+|||.+++..
T Consensus 85 A~~~~~~~~l~--~i~~~~~d~~~~~~-~~~fDlV~~~~----~~~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 85 LREVAAELGLK--NVTVVHGRAEEFGQ-EEKFDVVTSRA----VASLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred HHHHHHHcCCC--CEEEEeccHhhCCC-CCCccEEEEcc----ccCHHHHHHHHHHhcCCCeEEEEEe
Confidence 99999888774 59999999988765 66899999864 3567889999999999999999764
No 39
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.72 E-value=9.6e-16 Score=137.11 Aligned_cols=162 Identities=20% Similarity=0.336 Sum_probs=121.3
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+.+.+...++.+|||||||+|.++..+++.+ |..+++++|. +.+++.+++++...++. +
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~-----------------p~~~~~~~D~-~~~~~~a~~~~~~~gl~-~ 199 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-----------------PELDSTILNL-PGAIDLVNENAAEKGVA-D 199 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHC-----------------CCCEEEEEec-HHHHHHHHHHHHhCCcc-c
Confidence 445566666777899999999999999999997 5689999997 78999999998888776 6
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCH--HHHHHHHHhhccCCcEEEEEeccCC--ChHHHHHHHHHhhcccc
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHI--EKALAEAYRVLKRGGRFLCLELSHV--DIPVFKELYDYYSFSVI 228 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~--~~~~~~~~~~~~~~~~~ 228 (288)
+++++.+|+.+.+++. +|+|++..++|++++. ..+++++++.|+|||++++.|.... ..+.+..+.....
T Consensus 200 rv~~~~~d~~~~~~~~--~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~---- 273 (306)
T TIGR02716 200 RMRGIAVDIYKESYPE--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYIL---- 273 (306)
T ss_pred eEEEEecCccCCCCCC--CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHH----
Confidence 8999999987655543 7999999999988653 5799999999999999999987443 2232222222111
Q ss_pred ccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEE
Q 036563 229 PAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEY 272 (288)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 272 (288)
.++... ....+.+.+++.++|+++||+.+++
T Consensus 274 -~~~~~~------------~~~~~~~~~e~~~ll~~aGf~~v~~ 304 (306)
T TIGR02716 274 -GAGMPF------------SVLGFKEQARYKEILESLGYKDVTM 304 (306)
T ss_pred -Hccccc------------ccccCCCHHHHHHHHHHcCCCeeEe
Confidence 011000 0112335799999999999998865
No 40
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.70 E-value=4.2e-15 Score=127.75 Aligned_cols=194 Identities=18% Similarity=0.208 Sum_probs=129.5
Q ss_pred HHHHhHhhHHHhhhhhhh--hhhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCC
Q 036563 46 SNVFSSVAKNYDLMNDLM--SGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQE 123 (288)
Q Consensus 46 ~~~~~~~~~~y~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 123 (288)
.+.|+.++..|....... .........+.+...+...++.+|||+|||+|.++..+.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~------------------ 70 (233)
T PRK05134 9 IAKFSALAARWWDPNGEFKPLHRINPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLG------------------ 70 (233)
T ss_pred HHHHHHHHHHHhccCCCcHHHHHhhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcC------------------
Confidence 355777777665332211 011111222344555556678899999999999998887652
Q ss_pred CceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCC-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcE
Q 036563 124 ETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGR 202 (288)
Q Consensus 124 ~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~ 202 (288)
.+++++|+++.+++.++++....+. ++.+...|+...+ ...++||+|++..++++..++..+++.+.++|+|||.
T Consensus 71 -~~v~~iD~s~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~ 146 (233)
T PRK05134 71 -ADVTGIDASEENIEVARLHALESGL---KIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGL 146 (233)
T ss_pred -CeEEEEcCCHHHHHHHHHHHHHcCC---ceEEEecCHHHhhhhcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcE
Confidence 6899999999999999888765542 4677778776653 3446899999999999999999999999999999999
Q ss_pred EEEEeccCCChHHHHHH-HHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEe
Q 036563 203 FLCLELSHVDIPVFKEL-YDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275 (288)
Q Consensus 203 l~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 275 (288)
+++.............. ...+.....+ ... .....+++.+++.++++++||++++....
T Consensus 147 l~v~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-------~~~~~~~~~~~~~~~l~~~Gf~~v~~~~~ 206 (233)
T PRK05134 147 VFFSTLNRNLKSYLLAIVGAEYVLRMLP-------KGT-------HDYKKFIKPSELAAWLRQAGLEVQDITGL 206 (233)
T ss_pred EEEEecCCChHHHHHHHhhHHHHhhhcC-------ccc-------CchhhcCCHHHHHHHHHHCCCeEeeeeeE
Confidence 99765543211111111 0111100000 000 11234678999999999999999987643
No 41
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.69 E-value=1.3e-16 Score=134.62 Aligned_cols=154 Identities=18% Similarity=0.252 Sum_probs=115.2
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC----ceEEEEc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK----SLLWVEG 159 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~----~v~~~~~ 159 (288)
+++|||+|||+|.++..+++.. +.|+|+|+++.|++.|+++....+..+. ++++...
T Consensus 90 g~~ilDvGCGgGLLSepLArlg-------------------a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~ 150 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG-------------------AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDT 150 (282)
T ss_pred CceEEEeccCccccchhhHhhC-------------------CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhc
Confidence 4789999999999999999984 8999999999999999999655544433 3566777
Q ss_pred ccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHH-HHHhhccccccccccccCC
Q 036563 160 DAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKEL-YDYYSFSVIPAIGELVAGD 238 (288)
Q Consensus 160 d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 238 (288)
|++... +.||.|+|..+++|+.|+..++..+.++|+|+|.+++.+.......++..+ ...+...+.|. +.
T Consensus 151 ~~E~~~---~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~------Gt 221 (282)
T KOG1270|consen 151 DVEGLT---GKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPK------GT 221 (282)
T ss_pred chhhcc---cccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCC------CC
Confidence 777653 359999999999999999999999999999999999887766533333221 11111111111 11
Q ss_pred CcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEE
Q 036563 239 RGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYE 273 (288)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 273 (288)
++ ...|.++.++..+++.+|+++..+.
T Consensus 222 ---h~-----~ekfi~p~e~~~~l~~~~~~v~~v~ 248 (282)
T KOG1270|consen 222 ---HT-----WEKFINPEELTSILNANGAQVNDVV 248 (282)
T ss_pred ---cC-----HHHcCCHHHHHHHHHhcCcchhhhh
Confidence 11 1347799999999999999876654
No 42
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.69 E-value=1.5e-15 Score=135.42 Aligned_cols=196 Identities=17% Similarity=0.227 Sum_probs=120.4
Q ss_pred HHhHHHHHHHhHh-----hHHHhhhhhhhhhhh-----hHHHHHHHHhhcCC---CCCCeEEEecCCccHHHHHHHHhhh
Q 036563 40 EKSQLVSNVFSSV-----AKNYDLMNDLMSGGL-----HRLWKDRLVSKLNP---FPGMKHLDVAGGTGDVAFRILDTVN 106 (288)
Q Consensus 40 ~~~~~~~~~~~~~-----~~~y~~~~~~~~~~~-----~~~~~~~~~~~l~~---~~~~~vLDiG~G~G~~~~~l~~~~~ 106 (288)
...+.++++|+.+ ...|+.......... ++.+.+.+...+.. .++.+|||+|||+|.++..+++.
T Consensus 88 ~~~~~V~~~Fd~~a~~~w~~iy~~~d~v~~~~l~~~~~~~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~-- 165 (315)
T PLN02585 88 DDKEVVREYFNTTGFERWRKIYGETDEVNKVQLDIRLGHAQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE-- 165 (315)
T ss_pred HHHHHHHHHhcccchhhHHHhcCCccccCceeeecccChHHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC--
Confidence 3456778888876 344544322221111 22333445555532 35679999999999999999876
Q ss_pred hhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC---CCCceEEEEcccccCCCCCCCeeEEEeccccccc
Q 036563 107 SIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY---PDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNV 183 (288)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~ 183 (288)
+.+++++|+|+.|++.++++...... ...++.+...|+..+ +++||+|+|..+++|+
T Consensus 166 -----------------g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~vL~H~ 225 (315)
T PLN02585 166 -----------------GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLDVLIHY 225 (315)
T ss_pred -----------------CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcCEEEec
Confidence 37999999999999999998765421 113578888887654 4689999999999888
Q ss_pred cCH--HHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHH
Q 036563 184 THI--EKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAM 261 (288)
Q Consensus 184 ~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (288)
++. ..+++.+.+ +.++|.++ . + .+.. +.......+ +..+.+..... ...+.+.++++++
T Consensus 226 p~~~~~~ll~~l~~-l~~g~liI-s-~-~p~~-~~~~~l~~~--------g~~~~g~~~~~------r~y~~s~eel~~l 286 (315)
T PLN02585 226 PQDKADGMIAHLAS-LAEKRLII-S-F-APKT-LYYDILKRI--------GELFPGPSKAT------RAYLHAEADVERA 286 (315)
T ss_pred CHHHHHHHHHHHHh-hcCCEEEE-E-e-CCcc-hHHHHHHHH--------HhhcCCCCcCc------eeeeCCHHHHHHH
Confidence 653 346666665 45555544 2 2 2221 111221111 11111111000 0114489999999
Q ss_pred HHHcCCcEEEEEEee
Q 036563 262 ISDAGFQKVEYENLV 276 (288)
Q Consensus 262 l~~aGf~~v~~~~~~ 276 (288)
|+++||+++..+-..
T Consensus 287 L~~AGf~v~~~~~~~ 301 (315)
T PLN02585 287 LKKAGWKVARREMTA 301 (315)
T ss_pred HHHCCCEEEEEEEee
Confidence 999999987665443
No 43
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.68 E-value=4.7e-16 Score=130.12 Aligned_cols=146 Identities=12% Similarity=0.061 Sum_probs=107.6
Q ss_pred HHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 74 RLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 74 ~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
.+.+.+...++.+|||+|||+|..+..+++. +.+|+++|+|+.|++.++++....++ +
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~-------------------g~~V~~iD~s~~~l~~a~~~~~~~~~---~ 78 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLA-------------------GYDVRAWDHNPASIASVLDMKARENL---P 78 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHC-------------------CCeEEEEECCHHHHHHHHHHHHHhCC---C
Confidence 3445555555679999999999999999875 37999999999999999888776654 3
Q ss_pred eEEEEcccccCCCCCCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccc
Q 036563 154 LLWVEGDAEALCFEDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAI 231 (288)
Q Consensus 154 v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (288)
+.+...|+...+++ ++||+|+++.++++++ +...+++++.++|+|||++++++....... . .
T Consensus 79 v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~---------~------~ 142 (195)
T TIGR00477 79 LRTDAYDINAAALN-EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADY---------P------C 142 (195)
T ss_pred ceeEeccchhcccc-CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCC---------C------C
Confidence 67777777655544 5799999999998874 457899999999999999776654221110 0 0
Q ss_pred cccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEE
Q 036563 232 GELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYE 273 (288)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 273 (288)
+ .+. ...++++++.++|+ +|+++.+.
T Consensus 143 ~-----~~~---------~~~~~~~el~~~f~--~~~~~~~~ 168 (195)
T TIGR00477 143 H-----MPF---------SFTFKEDELRQYYA--DWELLKYN 168 (195)
T ss_pred C-----CCc---------CccCCHHHHHHHhC--CCeEEEee
Confidence 0 000 11347899998886 58888876
No 44
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.68 E-value=1e-15 Score=124.74 Aligned_cols=164 Identities=19% Similarity=0.302 Sum_probs=126.3
Q ss_pred HHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 75 LVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 75 ~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
+.+.++ |+.+|||+|||.|.+...+.+.. +...+|+|++++.+..+.++ .+
T Consensus 7 I~~~I~--pgsrVLDLGCGdG~LL~~L~~~k------------------~v~g~GvEid~~~v~~cv~r---------Gv 57 (193)
T PF07021_consen 7 IAEWIE--PGSRVLDLGCGDGELLAYLKDEK------------------QVDGYGVEIDPDNVAACVAR---------GV 57 (193)
T ss_pred HHHHcC--CCCEEEecCCCchHHHHHHHHhc------------------CCeEEEEecCHHHHHHHHHc---------CC
Confidence 444544 47899999999999999998874 58999999999988877654 57
Q ss_pred EEEEcccccC--CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccccccc
Q 036563 155 LWVEGDAEAL--CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIG 232 (288)
Q Consensus 155 ~~~~~d~~~~--~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (288)
.++++|++.. .+++++||.|+++.+++++.++..+|+++.|+ |...++. -|+...++....... -|
T Consensus 58 ~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRV---gr~~IVs---FPNFg~W~~R~~l~~------~G 125 (193)
T PF07021_consen 58 SVIQGDLDEGLADFPDQSFDYVILSQTLQAVRRPDEVLEEMLRV---GRRAIVS---FPNFGHWRNRLQLLL------RG 125 (193)
T ss_pred CEEECCHHHhHhhCCCCCccEEehHhHHHhHhHHHHHHHHHHHh---cCeEEEE---ecChHHHHHHHHHHh------cC
Confidence 7899998764 48899999999999999999999999998776 4455532 233333333333332 35
Q ss_pred ccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCe
Q 036563 233 ELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGV 279 (288)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~ 279 (288)
.++..+.-.|.|+....-+++|..++++++++.|+++++...+..+.
T Consensus 126 rmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 126 RMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred CCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 55555666777777777889999999999999999999987766543
No 45
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.66 E-value=1.1e-14 Score=120.27 Aligned_cols=100 Identities=22% Similarity=0.296 Sum_probs=83.8
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.+|||+|||+|..+..++... +..+++++|+++.|++.++++....++. +++++.+|+.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~-----------------~~~~V~~iD~s~~~~~~a~~~~~~~~~~--~i~~i~~d~~ 102 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIAR-----------------PELKLTLLESNHKKVAFLREVKAELGLN--NVEIVNGRAE 102 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHC-----------------CCCeEEEEeCcHHHHHHHHHHHHHhCCC--CeEEEecchh
Confidence 47899999999999999887664 4578999999999999999888877663 6999999998
Q ss_pred cCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 163 ALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 163 ~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
++. ..++||+|++.. + .+....++.+.++|+|||.+++.
T Consensus 103 ~~~-~~~~fD~I~s~~-~---~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 103 DFQ-HEEQFDVITSRA-L---ASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred hcc-ccCCccEEEehh-h---hCHHHHHHHHHHhcCCCCEEEEE
Confidence 864 356899999865 3 45677888899999999999864
No 46
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.66 E-value=1.9e-14 Score=122.89 Aligned_cols=159 Identities=17% Similarity=0.243 Sum_probs=115.3
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
.+.+|||+|||+|.++..+++.. .+++++|+++.+++.++++....+. .++.+...|+.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~-------------------~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~d~~ 103 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG-------------------ANVTGIDASEENIEVAKLHAKKDPL--LKIEYRCTSVE 103 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC-------------------CeEEEEeCCHHHHHHHHHHHHHcCC--CceEEEeCCHH
Confidence 46799999999999998887653 5799999999999999988776543 25888888887
Q ss_pred cCCCC-CCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHH-hhccccccccccccCCCc
Q 036563 163 ALCFE-DSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDY-YSFSVIPAIGELVAGDRG 240 (288)
Q Consensus 163 ~~~~~-~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 240 (288)
+.+.. .++||+|++..++++..++..+++++.+.|+|||.+++................. +.....+ ....
T Consensus 104 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~- 176 (224)
T TIGR01983 104 DLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVP------KGTH- 176 (224)
T ss_pred HhhcCCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCC------CCcC-
Confidence 66533 3689999999999999999999999999999999998766543322222111110 1100000 0000
Q ss_pred chhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 241 SYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
...++.+..++.++++++||+++++....
T Consensus 177 -------~~~~~~~~~~l~~~l~~~G~~i~~~~~~~ 205 (224)
T TIGR01983 177 -------DWEKFIKPSELTSWLESAGLRVKDVKGLV 205 (224)
T ss_pred -------ChhhcCCHHHHHHHHHHcCCeeeeeeeEE
Confidence 01235688999999999999999887543
No 47
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.65 E-value=3.4e-15 Score=129.51 Aligned_cols=165 Identities=19% Similarity=0.166 Sum_probs=115.8
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+...++.-.+.+|||||||.|.++..++... ...|+|+|+++...-+.+....-.+.. .
T Consensus 105 ~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~G------------------A~~ViGiDP~~lf~~QF~~i~~~lg~~-~ 165 (315)
T PF08003_consen 105 DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRG------------------AKSVIGIDPSPLFYLQFEAIKHFLGQD-P 165 (315)
T ss_pred HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcC------------------CCEEEEECCChHHHHHHHHHHHHhCCC-c
Confidence 456777766778999999999999999998874 368999999987765543222222211 2
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccccccc
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIG 232 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (288)
.+......++.++. .+.||+|+|..+|+|..++...|.+++..|+|||.+++-....+......
T Consensus 166 ~~~~lplgvE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~--------------- 229 (315)
T PF08003_consen 166 PVFELPLGVEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTV--------------- 229 (315)
T ss_pred cEEEcCcchhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceE---------------
Confidence 34444456677776 67899999999999999999999999999999999997544333211100
Q ss_pred ccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 233 ELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
++. .+.|.. ...+...++...+..+|+++||+.+++....
T Consensus 230 -L~P--~~rYa~-m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~~ 269 (315)
T PF08003_consen 230 -LVP--EDRYAK-MRNVWFIPSVAALKNWLERAGFKDVRCVDVS 269 (315)
T ss_pred -Ecc--CCcccC-CCceEEeCCHHHHHHHHHHcCCceEEEecCc
Confidence 000 011111 0112236799999999999999999987653
No 48
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.64 E-value=2e-14 Score=123.08 Aligned_cols=155 Identities=19% Similarity=0.303 Sum_probs=105.6
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||+|||+|.++..+++.. ..++++|++++|++.++++....+.. .++.+..+|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~-------------------~~v~~~D~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~ 121 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG-------------------AKVVASDISPQMVEEARERAPEAGLA-GNITFEVGDL 121 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC-------------------CEEEEEECCHHHHHHHHHHHHhcCCc-cCcEEEEcCc
Confidence 567799999999999999888763 57999999999999999988776554 4788998884
Q ss_pred ccCCCCCCCeeEEEeccccccccC--HHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCC
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDR 239 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (288)
.. .+++||+|++..+++|+++ ...+++++.+.+++++.+.+ . +..+.... .... ...+....
T Consensus 122 ~~---~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~---~-~~~~~~~~-~~~l--------~~~~~~~~ 185 (230)
T PRK07580 122 ES---LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTF---A-PYTPLLAL-LHWI--------GGLFPGPS 185 (230)
T ss_pred hh---ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEE---C-CccHHHHH-HHHh--------ccccCCcc
Confidence 32 3567999999999988763 45678888887654443332 1 11111111 1111 11110000
Q ss_pred cchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCC
Q 036563 240 GSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGG 278 (288)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~ 278 (288)
.. ....+.+..++.++++++||++++.+.+..+
T Consensus 186 ~~------~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 218 (230)
T PRK07580 186 RT------TRIYPHREKGIRRALAAAGFKVVRTERISSG 218 (230)
T ss_pred CC------CCccccCHHHHHHHHHHCCCceEeeeeccch
Confidence 00 0012457899999999999999999887655
No 49
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.63 E-value=3.9e-14 Score=117.73 Aligned_cols=141 Identities=18% Similarity=0.202 Sum_probs=108.1
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
+..+..+...+...++.+|||+|||+|.++..+++.. +..+++++|+++.+++.++++....+
T Consensus 17 ~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~-----------------~~~~v~~vD~s~~~~~~a~~n~~~~~ 79 (187)
T PRK08287 17 EEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQF-----------------PSLQVTAIERNPDALRLIKENRQRFG 79 (187)
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHC-----------------CCCEEEEEECCHHHHHHHHHHHHHhC
Confidence 3444555667777778899999999999999998875 46899999999999999999887766
Q ss_pred CCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccc
Q 036563 149 YPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVI 228 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 228 (288)
+ .++++..+|... .+ .++||+|++..... ....+++.+.+.|+|||++++.....
T Consensus 80 ~--~~i~~~~~d~~~-~~-~~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~lv~~~~~~------------------ 134 (187)
T PRK08287 80 C--GNIDIIPGEAPI-EL-PGKADAIFIGGSGG---NLTAIIDWSLAHLHPGGRLVLTFILL------------------ 134 (187)
T ss_pred C--CCeEEEecCchh-hc-CcCCCEEEECCCcc---CHHHHHHHHHHhcCCCeEEEEEEecH------------------
Confidence 5 368888888742 23 35799999876543 35678899999999999998643211
Q ss_pred ccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEe
Q 036563 229 PAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275 (288)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 275 (288)
.+.+++.+++++.||..+++...
T Consensus 135 ------------------------~~~~~~~~~l~~~g~~~~~~~~~ 157 (187)
T PRK08287 135 ------------------------ENLHSALAHLEKCGVSELDCVQL 157 (187)
T ss_pred ------------------------hhHHHHHHHHHHCCCCcceEEEE
Confidence 13467778999999987776443
No 50
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.63 E-value=4.6e-14 Score=116.48 Aligned_cols=142 Identities=20% Similarity=0.158 Sum_probs=108.1
Q ss_pred hhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEE
Q 036563 77 SKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLW 156 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~ 156 (288)
..+...++.+|||+|||+|.++..++... .+++++|+++.+++.++++....+. ++++
T Consensus 13 ~~l~~~~~~~vLdlG~G~G~~~~~l~~~~-------------------~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~ 70 (179)
T TIGR00537 13 ANLRELKPDDVLEIGAGTGLVAIRLKGKG-------------------KCILTTDINPFAVKELRENAKLNNV---GLDV 70 (179)
T ss_pred HHHHhcCCCeEEEeCCChhHHHHHHHhcC-------------------CEEEEEECCHHHHHHHHHHHHHcCC---ceEE
Confidence 34444456789999999999999888764 4899999999999999998876653 5788
Q ss_pred EEcccccCCCCCCCeeEEEeccccccccC---------------------HHHHHHHHHhhccCCcEEEEEeccCCChHH
Q 036563 157 VEGDAEALCFEDSTMDGYTIAFGIRNVTH---------------------IEKALAEAYRVLKRGGRFLCLELSHVDIPV 215 (288)
Q Consensus 157 ~~~d~~~~~~~~~~~D~v~~~~~l~~~~~---------------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~ 215 (288)
..+|+.+.. .++||+|+++..+++.++ ...+++++.++|+|||.+++......
T Consensus 71 ~~~d~~~~~--~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~---- 144 (179)
T TIGR00537 71 VMTDLFKGV--RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN---- 144 (179)
T ss_pred EEccccccc--CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC----
Confidence 888876543 348999999988765542 24679999999999999987643221
Q ss_pred HHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEE
Q 036563 216 FKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHS 284 (288)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~ 284 (288)
...++.+.|++.||+......-......+++
T Consensus 145 --------------------------------------~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~ 175 (179)
T TIGR00537 145 --------------------------------------GEPDTFDKLDERGFRYEIVAERGLFFEELFA 175 (179)
T ss_pred --------------------------------------ChHHHHHHHHhCCCeEEEEEEeecCceEEEE
Confidence 3567788999999998887765544444443
No 51
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.62 E-value=3.9e-14 Score=126.33 Aligned_cols=122 Identities=16% Similarity=0.183 Sum_probs=89.2
Q ss_pred hhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh
Q 036563 67 LHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE 146 (288)
Q Consensus 67 ~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 146 (288)
+.+.+.+.+.+.++ ++.+|||+|||+|..+..+++... ...+|+++|+|++|++.+++++..
T Consensus 49 il~~~~~~ia~~~~--~~~~iLELGcGtG~~t~~Ll~~l~----------------~~~~~~~iDiS~~mL~~a~~~l~~ 110 (301)
T TIGR03438 49 ILERHADEIAAATG--AGCELVELGSGSSRKTRLLLDALR----------------QPARYVPIDISADALKESAAALAA 110 (301)
T ss_pred HHHHHHHHHHHhhC--CCCeEEecCCCcchhHHHHHHhhc----------------cCCeEEEEECCHHHHHHHHHHHHh
Confidence 34455566666664 457899999999999999998862 147899999999999999988765
Q ss_pred cCCCCCceEEEEcccccC-CCCCC----CeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEe
Q 036563 147 RGYPDKSLLWVEGDAEAL-CFEDS----TMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 147 ~~~~~~~v~~~~~d~~~~-~~~~~----~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
.. +.-++.++++|+.+. +++.. ...++++..++++++ +...+|+++++.|+|||.+++.-
T Consensus 111 ~~-p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 111 DY-PQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred hC-CCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 32 213577789998763 33322 234555556777775 35678999999999999998643
No 52
>PRK06922 hypothetical protein; Provisional
Probab=99.62 E-value=1e-14 Score=138.76 Aligned_cols=113 Identities=32% Similarity=0.445 Sum_probs=93.5
Q ss_pred cCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEE
Q 036563 79 LNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVE 158 (288)
Q Consensus 79 l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~ 158 (288)
....++.+|||+|||+|..+..+++.. ++.+++++|+|+.|++.++++....+ .++.++.
T Consensus 414 ~d~~~g~rVLDIGCGTG~ls~~LA~~~-----------------P~~kVtGIDIS~~MLe~Ararl~~~g---~~ie~I~ 473 (677)
T PRK06922 414 LDYIKGDTIVDVGAGGGVMLDMIEEET-----------------EDKRIYGIDISENVIDTLKKKKQNEG---RSWNVIK 473 (677)
T ss_pred hhhcCCCEEEEeCCCCCHHHHHHHHhC-----------------CCCEEEEEECCHHHHHHHHHHhhhcC---CCeEEEE
Confidence 334457899999999999998888876 56899999999999999988765443 3678888
Q ss_pred cccccCC--CCCCCeeEEEeccccccc-------------cCHHHHHHHHHhhccCCcEEEEEeccCC
Q 036563 159 GDAEALC--FEDSTMDGYTIAFGIRNV-------------THIEKALAEAYRVLKRGGRFLCLELSHV 211 (288)
Q Consensus 159 ~d~~~~~--~~~~~~D~v~~~~~l~~~-------------~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 211 (288)
+|+.+++ +++++||+|+++.++|++ .+..++|+++.++|||||.+++.+...+
T Consensus 474 gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~ 541 (677)
T PRK06922 474 GDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT 541 (677)
T ss_pred cchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence 9988776 677899999999988864 2457899999999999999999876443
No 53
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.61 E-value=3.1e-14 Score=119.06 Aligned_cols=160 Identities=16% Similarity=0.306 Sum_probs=106.6
Q ss_pred HHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 75 LVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 75 ~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
+.+.++ ++.+|||+|||+|.++..+++.. ...++++|+++++++.+++ .++
T Consensus 7 i~~~i~--~~~~iLDiGcG~G~~~~~l~~~~------------------~~~~~giD~s~~~i~~a~~---------~~~ 57 (194)
T TIGR02081 7 ILNLIP--PGSRVLDLGCGDGELLALLRDEK------------------QVRGYGIEIDQDGVLACVA---------RGV 57 (194)
T ss_pred HHHhcC--CCCEEEEeCCCCCHHHHHHHhcc------------------CCcEEEEeCCHHHHHHHHH---------cCC
Confidence 444443 46799999999999998887653 3678999999999988754 246
Q ss_pred EEEEccccc-C-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccccccc
Q 036563 155 LWVEGDAEA-L-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIG 232 (288)
Q Consensus 155 ~~~~~d~~~-~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (288)
.++.+|+.. + ++++++||+|+++.+++|+.++..+|+++.+.+++ +++. + |....+......+.....+...
T Consensus 58 ~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~---~ii~-~--p~~~~~~~~~~~~~~~~~~~~~ 131 (194)
T TIGR02081 58 NVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNPEEILDEMLRVGRH---AIVS-F--PNFGYWRVRWSILTKGRMPVTG 131 (194)
T ss_pred eEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCe---EEEE-c--CChhHHHHHHHHHhCCccccCC
Confidence 778888765 3 35667899999999999999999999998887653 3322 2 2222222211111111111111
Q ss_pred ccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEe
Q 036563 233 ELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275 (288)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 275 (288)
...+.+......++++.+++.++++++||++++...+
T Consensus 132 ------~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~~~~~ 168 (194)
T TIGR02081 132 ------ELPYDWYNTPNIHFCTIADFEDLCGELNLRILDRAAF 168 (194)
T ss_pred ------CCCccccCCCCcccCcHHHHHHHHHHCCCEEEEEEEe
Confidence 0111222222335779999999999999999987765
No 54
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.61 E-value=6.3e-14 Score=114.59 Aligned_cols=146 Identities=18% Similarity=0.294 Sum_probs=107.1
Q ss_pred HHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 75 LVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 75 ~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
+...++..+..++||+|||.|.++..++... .+++++|+++.+++.+++++... +++
T Consensus 35 l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC-------------------d~LlavDis~~Al~~Ar~Rl~~~----~~V 91 (201)
T PF05401_consen 35 LLAALPRRRYRRALEVGCSIGVLTERLAPRC-------------------DRLLAVDISPRALARARERLAGL----PHV 91 (201)
T ss_dssp HHHHHTTSSEEEEEEE--TTSHHHHHHGGGE-------------------EEEEEEES-HHHHHHHHHHTTT-----SSE
T ss_pred HHHhcCccccceeEecCCCccHHHHHHHHhh-------------------CceEEEeCCHHHHHHHHHhcCCC----CCe
Confidence 4446777777899999999999999999986 68999999999999999998765 689
Q ss_pred EEEEcccccCCCCCCCeeEEEeccccccccC---HHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccc
Q 036563 155 LWVEGDAEALCFEDSTMDGYTIAFGIRNVTH---IEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAI 231 (288)
Q Consensus 155 ~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~---~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (288)
++.+.|+... .|.++||+|+++.+++++.+ ...++..+...|+|||.+++..... .....|
T Consensus 92 ~~~~~dvp~~-~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd-------~~c~~w-------- 155 (201)
T PF05401_consen 92 EWIQADVPEF-WPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARD-------ANCRRW-------- 155 (201)
T ss_dssp EEEES-TTT----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H-------HHHHHT--------
T ss_pred EEEECcCCCC-CCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC-------Cccccc--------
Confidence 9999998765 46779999999999999975 4568999999999999999865421 111111
Q ss_pred cccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCC
Q 036563 232 GELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGG 278 (288)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~ 278 (288)
| +.+..+.+.++|++. |..|+.....++
T Consensus 156 g------------------h~~ga~tv~~~~~~~-~~~~~~~~~~~~ 183 (201)
T PF05401_consen 156 G------------------HAAGAETVLEMLQEH-LTEVERVECRGG 183 (201)
T ss_dssp T-------------------S--HHHHHHHHHHH-SEEEEEEEEE-S
T ss_pred C------------------cccchHHHHHHHHHH-hhheeEEEEcCC
Confidence 1 233678899999888 888887777654
No 55
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.60 E-value=9.3e-15 Score=138.40 Aligned_cols=153 Identities=13% Similarity=0.205 Sum_probs=113.3
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..+.+.+...++.+|||+|||+|.++..+++.. .+++++|+++.|++.+++..... +
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~-------------------~~v~giD~s~~~l~~a~~~~~~~----~ 83 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKA-------------------GQVIALDFIESVIKKNESINGHY----K 83 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC-------------------CEEEEEeCCHHHHHHHHHHhccC----C
Confidence 456667766667799999999999999998874 68999999999998876533211 5
Q ss_pred ceEEEEccccc--CCCCCCCeeEEEeccccccccC--HHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccc
Q 036563 153 SLLWVEGDAEA--LCFEDSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVI 228 (288)
Q Consensus 153 ~v~~~~~d~~~--~~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 228 (288)
++.++.+|+.. +++++++||+|++..+++++++ ...+++++.++|+|||.+++.+...........
T Consensus 84 ~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~---------- 153 (475)
T PLN02336 84 NVKFMCADVTSPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKR---------- 153 (475)
T ss_pred ceEEEEecccccccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccc----------
Confidence 78999999863 4667789999999999999976 568999999999999999987654321100000
Q ss_pred ccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEe
Q 036563 229 PAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275 (288)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 275 (288)
..++. ++.....|..++.++||.......+
T Consensus 154 -------~~~~~----------~~~~~~~~~~~f~~~~~~~~~~~~~ 183 (475)
T PLN02336 154 -------KNNPT----------HYREPRFYTKVFKECHTRDEDGNSF 183 (475)
T ss_pred -------cCCCC----------eecChHHHHHHHHHheeccCCCCEE
Confidence 00111 1225678899999999987655433
No 56
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.60 E-value=7.7e-15 Score=120.46 Aligned_cols=111 Identities=15% Similarity=0.131 Sum_probs=99.5
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..++..++..+..+|.|+|||+|..+..++++. |.+.++|+|.|++|++.|+++. +
T Consensus 20 ~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~Rw-----------------P~A~i~GiDsS~~Mla~Aa~rl-------p 75 (257)
T COG4106 20 RDLLARVPLERPRRVVDLGCGPGNSTELLARRW-----------------PDAVITGIDSSPAMLAKAAQRL-------P 75 (257)
T ss_pred HHHHhhCCccccceeeecCCCCCHHHHHHHHhC-----------------CCCeEeeccCCHHHHHHHHHhC-------C
Confidence 457778888888899999999999999999998 6899999999999999998876 6
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
+++|..+|+.... +....|+++++.++++++|-...|..+...|.|||++.+.-.
T Consensus 76 ~~~f~~aDl~~w~-p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmP 130 (257)
T COG4106 76 DATFEEADLRTWK-PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMP 130 (257)
T ss_pred CCceecccHhhcC-CCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECC
Confidence 8999999998875 445799999999999999999999999999999999997533
No 57
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.60 E-value=4.7e-16 Score=115.70 Aligned_cols=97 Identities=28% Similarity=0.397 Sum_probs=65.8
Q ss_pred EEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCC--
Q 036563 88 LDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC-- 165 (288)
Q Consensus 88 LDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~-- 165 (288)
||+|||+|.++..+++.. +..+++++|+|+.|++.++++....... +......+..+..
T Consensus 1 LdiGcG~G~~~~~l~~~~-----------------~~~~~~~~D~s~~~l~~a~~~~~~~~~~--~~~~~~~~~~~~~~~ 61 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-----------------PDARYTGVDISPSMLERARERLAELGND--NFERLRFDVLDLFDY 61 (99)
T ss_dssp -EESTTTS-TTTTHHHHC------------------EEEEEEEESSSSTTSTTCCCHHHCT-----EEEEE--SSS---C
T ss_pred CEeCccChHHHHHHHHhC-----------------CCCEEEEEECCHHHHHHHHHHhhhcCCc--ceeEEEeecCChhhc
Confidence 799999999999999996 4689999999999998888888776432 3333333333221
Q ss_pred CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEE
Q 036563 166 FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRF 203 (288)
Q Consensus 166 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l 203 (288)
...++||+|++..++||++++..++++++++|+|||.|
T Consensus 62 ~~~~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 62 DPPESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp CC----SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred ccccccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 12258999999999999999999999999999999986
No 58
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.59 E-value=1.1e-14 Score=129.15 Aligned_cols=102 Identities=16% Similarity=0.076 Sum_probs=86.3
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.++++....++ ++++...|+.
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~-------------------g~~V~avD~s~~ai~~~~~~~~~~~l---~v~~~~~D~~ 177 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL-------------------GFDVTAVDINQQSLENLQEIAEKENL---NIRTGLYDIN 177 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC-------------------CCEEEEEECCHHHHHHHHHHHHHcCC---ceEEEEechh
Confidence 4569999999999999998875 37999999999999999988877654 5788888887
Q ss_pred cCCCCCCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEe
Q 036563 163 ALCFEDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 163 ~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
...+ +++||+|++..++++++ +...+++++.+.|+|||+++++.
T Consensus 178 ~~~~-~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 178 SASI-QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred cccc-cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 6554 56899999999998875 56789999999999999977654
No 59
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.59 E-value=3.7e-15 Score=123.24 Aligned_cols=191 Identities=23% Similarity=0.250 Sum_probs=135.6
Q ss_pred ccccccchhHHhHHHHHHHhHhhHHHhhh-hhhhhhhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhh
Q 036563 31 FGFKEVPAEEKSQLVSNVFSSVAKNYDLM-NDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIK 109 (288)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~ 109 (288)
.|-.+++....+..+...|+..+..||.. ............ .+++......+-.++||+|||||..+..+....
T Consensus 73 lg~~e~p~~pP~aYVe~LFD~~Ae~Fd~~LVdkL~Y~vP~~l-~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a---- 147 (287)
T COG4976 73 LGRGETPEKPPSAYVETLFDQYAERFDHILVDKLGYSVPELL-AEMIGKADLGPFRRMLDLGCGTGLTGEALRDMA---- 147 (287)
T ss_pred hcCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcCccHHHH-HHHHHhccCCccceeeecccCcCcccHhHHHHH----
Confidence 44456666677788999999999999853 222222233333 344455555556799999999999999998886
Q ss_pred hhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC--CCCCCCeeEEEeccccccccCHH
Q 036563 110 RRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL--CFEDSTMDGYTIAFGIRNVTHIE 187 (288)
Q Consensus 110 ~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~D~v~~~~~l~~~~~~~ 187 (288)
.+++|+|+|.+|++.+.++-.- -...+.++..+ ...++.||+|.+..++.++-+.+
T Consensus 148 ---------------~~ltGvDiS~nMl~kA~eKg~Y-------D~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le 205 (287)
T COG4976 148 ---------------DRLTGVDISENMLAKAHEKGLY-------DTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGALE 205 (287)
T ss_pred ---------------hhccCCchhHHHHHHHHhccch-------HHHHHHHHHHHhhhccCCcccchhhhhHHHhhcchh
Confidence 7899999999999988775211 12233443322 14567899999999999999999
Q ss_pred HHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCC
Q 036563 188 KALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGF 267 (288)
Q Consensus 188 ~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 267 (288)
.++.-...+|+|||.|.+..-+.+... .+. +..+.+.-++...++.+++..||
T Consensus 206 ~~~~~aa~~L~~gGlfaFSvE~l~~~~------------------~f~---------l~ps~RyAH~~~YVr~~l~~~Gl 258 (287)
T COG4976 206 GLFAGAAGLLAPGGLFAFSVETLPDDG------------------GFV---------LGPSQRYAHSESYVRALLAASGL 258 (287)
T ss_pred hHHHHHHHhcCCCceEEEEecccCCCC------------------Cee---------cchhhhhccchHHHHHHHHhcCc
Confidence 999999999999999997544443221 000 00111223578899999999999
Q ss_pred cEEEEEEe
Q 036563 268 QKVEYENL 275 (288)
Q Consensus 268 ~~v~~~~~ 275 (288)
++++++..
T Consensus 259 ~~i~~~~t 266 (287)
T COG4976 259 EVIAIEDT 266 (287)
T ss_pred eEEEeecc
Confidence 99998765
No 60
>PRK04266 fibrillarin; Provisional
Probab=99.59 E-value=8e-14 Score=118.91 Aligned_cols=104 Identities=24% Similarity=0.245 Sum_probs=80.4
Q ss_pred hcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 78 KLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
.++..++.+|||+|||+|.++..+++.. +..+|+++|+++.|++.+.+..... .++.++
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v-----------------~~g~V~avD~~~~ml~~l~~~a~~~----~nv~~i 125 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIV-----------------EEGVVYAVEFAPRPMRELLEVAEER----KNIIPI 125 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhc-----------------CCCeEEEEECCHHHHHHHHHHhhhc----CCcEEE
Confidence 4777888999999999999999998876 2468999999999999877665543 478899
Q ss_pred EcccccC----CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 158 EGDAEAL----CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 158 ~~d~~~~----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
.+|+... ++ .++||+|++.... ......+++++.++|||||.+++
T Consensus 126 ~~D~~~~~~~~~l-~~~~D~i~~d~~~--p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 126 LADARKPERYAHV-VEKVDVIYQDVAQ--PNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred ECCCCCcchhhhc-cccCCEEEECCCC--hhHHHHHHHHHHHhcCCCcEEEE
Confidence 9998642 22 2469999854321 11123468999999999999998
No 61
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.59 E-value=2.1e-13 Score=114.45 Aligned_cols=113 Identities=23% Similarity=0.404 Sum_probs=91.3
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
...+..+...++.+|||+|||+|.++..++...+ +..+++++|+++.+++.++++....++. .
T Consensus 30 ~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~----------------~~~~v~avD~~~~~~~~a~~n~~~~g~~-~ 92 (198)
T PRK00377 30 ALALSKLRLRKGDMILDIGCGTGSVTVEASLLVG----------------ETGKVYAVDKDEKAINLTRRNAEKFGVL-N 92 (198)
T ss_pred HHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhC----------------CCCEEEEEECCHHHHHHHHHHHHHhCCC-C
Confidence 3345677778889999999999999999887753 3578999999999999999998877644 5
Q ss_pred ceEEEEcccccC-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 153 SLLWVEGDAEAL-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 153 ~v~~~~~d~~~~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
++.++.+|+.+. +...+.||.|++... ..++..+++.+.+.|+|||++++
T Consensus 93 ~v~~~~~d~~~~l~~~~~~~D~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 93 NIVLIKGEAPEILFTINEKFDRIFIGGG---SEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred CeEEEEechhhhHhhcCCCCCEEEECCC---cccHHHHHHHHHHHcCCCcEEEE
Confidence 788998988653 223457999998542 34678899999999999999985
No 62
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.58 E-value=5.6e-15 Score=110.36 Aligned_cols=98 Identities=31% Similarity=0.475 Sum_probs=79.4
Q ss_pred EEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCC
Q 036563 87 HLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCF 166 (288)
Q Consensus 87 vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~ 166 (288)
|||+|||+|..+..+++.+. ++ +..+++++|+|++|++.++++....+ .++++++.|+.++++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~-~~-------------~~~~~~gvD~s~~~l~~~~~~~~~~~---~~~~~~~~D~~~l~~ 63 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFD-AG-------------PSSRVIGVDISPEMLELAKKRFSEDG---PKVRFVQADARDLPF 63 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-------------------SEEEEEES-HHHHHHHHHHSHHTT---TTSEEEESCTTCHHH
T ss_pred CEEeecCCcHHHHHHHHHhh-hc-------------ccceEEEEECCHHHHHHHHHhchhcC---CceEEEECCHhHCcc
Confidence 79999999999999998861 00 24799999999999999999987755 379999999999887
Q ss_pred CCCCeeEEEecc-cccccc--CHHHHHHHHHhhccCCc
Q 036563 167 EDSTMDGYTIAF-GIRNVT--HIEKALAEAYRVLKRGG 201 (288)
Q Consensus 167 ~~~~~D~v~~~~-~l~~~~--~~~~~l~~~~~~L~pgG 201 (288)
.+++||+|++.. +++|++ +...+++++.++|+|||
T Consensus 64 ~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 64 SDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp HSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 788999999954 488876 35789999999999998
No 63
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.57 E-value=1.1e-13 Score=126.97 Aligned_cols=113 Identities=20% Similarity=0.221 Sum_probs=93.9
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+.+.+...++.+|||||||+|.++..+++.. +.+++++|+|+++++.++++... .
T Consensus 157 ~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~------------------g~~V~giDlS~~~l~~A~~~~~~-----l 213 (383)
T PRK11705 157 DLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY------------------GVSVVGVTISAEQQKLAQERCAG-----L 213 (383)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC------------------CCEEEEEeCCHHHHHHHHHHhcc-----C
Confidence 456667777888999999999999999998875 37999999999999999988742 2
Q ss_pred ceEEEEcccccCCCCCCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEeccCC
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLELSHV 211 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~ 211 (288)
++++...|...+ +++||.|++..+++|+. +...+++++.++|+|||.+++.++..+
T Consensus 214 ~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 214 PVEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred eEEEEECchhhc---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 477888887654 36799999999999885 357899999999999999998766544
No 64
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.57 E-value=4e-14 Score=119.08 Aligned_cols=106 Identities=23% Similarity=0.263 Sum_probs=87.4
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc-
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA- 161 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~- 161 (288)
++.+|||+|||+|..+..+++.. +..+++++|+++.+++.++++....++ +++.++++|+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-----------------p~~~v~gVD~s~~~i~~a~~~~~~~~~--~~v~~~~~d~~ 100 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-----------------PDINFIGIEVHEPGVGKALKKIEEEGL--TNLRLLCGDAV 100 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-----------------CCccEEEEEechHHHHHHHHHHHHcCC--CCEEEEecCHH
Confidence 46799999999999999998876 457899999999999999998877665 4799999998
Q ss_pred ccCC--CCCCCeeEEEecccccccc--------CHHHHHHHHHhhccCCcEEEEEe
Q 036563 162 EALC--FEDSTMDGYTIAFGIRNVT--------HIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 162 ~~~~--~~~~~~D~v~~~~~l~~~~--------~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
..++ +++++||.|++++...+.. ....+++++.++|+|||.+++..
T Consensus 101 ~~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 101 EVLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred HHHHHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 6655 6677899999876543221 14678999999999999999753
No 65
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.56 E-value=1.1e-13 Score=106.56 Aligned_cols=114 Identities=26% Similarity=0.344 Sum_probs=91.0
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
....+...+...++.+|||+|||+|..+..+++.. +..+++++|+++.+++.++++....+.+
T Consensus 7 ~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~-----------------~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 69 (124)
T TIGR02469 7 VRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLV-----------------PNGRVYAIERNPEALRLIERNARRFGVS 69 (124)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHC-----------------CCceEEEEcCCHHHHHHHHHHHHHhCCC
Confidence 34456666666667899999999999999999886 3589999999999999999988776653
Q ss_pred CCceEEEEccccc-CCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 151 DKSLLWVEGDAEA-LCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 151 ~~~v~~~~~d~~~-~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
++.++.+|+.. .+...++||.|++..... ....+++++.+.|+|||.+++.
T Consensus 70 --~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 70 --NIVIVEGDAPEALEDSLPEPDRVFIGGSGG---LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred --ceEEEeccccccChhhcCCCCEEEECCcch---hHHHHHHHHHHHcCCCCEEEEE
Confidence 68888888764 222335899999876543 3468899999999999999864
No 66
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.56 E-value=1.2e-14 Score=132.26 Aligned_cols=185 Identities=14% Similarity=0.117 Sum_probs=119.5
Q ss_pred hhhhHhhhhccccCcc-ccccccCCCCccccccccchhHHhHHHHHHHhHhhHHHh--hhhhhhhhhhhHHHHHHHHhhc
Q 036563 3 VRVVTRNLGSRLLPML-SSTSLLHSHATSFGFKEVPAEEKSQLVSNVFSSVAKNYD--LMNDLMSGGLHRLWKDRLVSKL 79 (288)
Q Consensus 3 ~~~~~~~~~~~~~~~~-ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~--~~~~~~~~~~~~~~~~~~~~~l 79 (288)
+++++.+++.+.+... +|.+|+++...+..+........+....--... ..+. .....++...-..-.+.+.+.+
T Consensus 147 i~~~~~~~~~k~l~~~~~~~~~~kaR~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~gVFs~~~LD~GtrllL~~l 224 (378)
T PRK15001 147 IHTSTLELFEKVLGPTTTTLAWKKARLINCTFNEPPLADAPQTVSWKLEG--TDWTIHNHANVFSRTGLDIGARFFMQHL 224 (378)
T ss_pred CcHHHHHHHHHHhCccchhhhhhhhhheeccCCCCCCcCCCceeEEEEcC--ceEEEEecCCccCCCCcChHHHHHHHhC
Confidence 3456667777877554 334466665444433222111111100000000 0111 1123333333334456777888
Q ss_pred CCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC-CCceEEEE
Q 036563 80 NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP-DKSLLWVE 158 (288)
Q Consensus 80 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~v~~~~ 158 (288)
+...+.+|||+|||+|.++..+++.. |..+++++|+|+.+++.+++++...+.. ..++++..
T Consensus 225 p~~~~~~VLDLGCGtGvi~i~la~~~-----------------P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~ 287 (378)
T PRK15001 225 PENLEGEIVDLGCGNGVIGLTLLDKN-----------------PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMI 287 (378)
T ss_pred CcccCCeEEEEeccccHHHHHHHHhC-----------------CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEE
Confidence 76666799999999999999999886 5689999999999999999988766432 13678888
Q ss_pred cccccCCCCCCCeeEEEecccccccc-----CHHHHHHHHHhhccCCcEEEEEe
Q 036563 159 GDAEALCFEDSTMDGYTIAFGIRNVT-----HIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 159 ~d~~~~~~~~~~~D~v~~~~~l~~~~-----~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
.|+... .+..+||+|+++..+|... ...++++.+.++|+|||.++++.
T Consensus 288 ~D~l~~-~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 288 NNALSG-VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cccccc-CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 887543 2345799999998876432 13578999999999999999874
No 67
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.56 E-value=1.1e-13 Score=116.76 Aligned_cols=112 Identities=20% Similarity=0.296 Sum_probs=91.6
Q ss_pred HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 72 ~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
...+.+.+...++.+|||+|||+|..+..+++..+ +..+++++|+++++++.+++++...++.
T Consensus 61 ~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~----------------~~g~V~~iD~~~~~~~~a~~~l~~~~~~- 123 (205)
T PRK13944 61 VAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIE----------------RRGKVYTVEIVKELAIYAAQNIERLGYW- 123 (205)
T ss_pred HHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcC----------------CCCEEEEEeCCHHHHHHHHHHHHHcCCC-
Confidence 34566777777788999999999999999888763 3478999999999999999998877664
Q ss_pred CceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 152 KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
.++++..+|+.+......+||+|++..++.+++ +++.+.|+|||++++.
T Consensus 124 ~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 124 GVVEVYHGDGKRGLEKHAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIP 172 (205)
T ss_pred CcEEEEECCcccCCccCCCccEEEEccCcchhh------HHHHHhcCcCcEEEEE
Confidence 468999999876544456899999998876653 4678999999999864
No 68
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.55 E-value=1.1e-13 Score=114.34 Aligned_cols=111 Identities=18% Similarity=0.171 Sum_probs=88.3
Q ss_pred HHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 75 LVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 75 ~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
+.+.++..+++++||+|||.|+.+..+++. +..|+++|.|+..++.+.+.....++ .+
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~-------------------G~~VtAvD~s~~al~~l~~~a~~~~l---~i 79 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQ-------------------GFDVTAVDISPVALEKLQRLAEEEGL---DI 79 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHT-------------------T-EEEEEESSHHHHHHHHHHHHHTT----TE
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHC-------------------CCeEEEEECCHHHHHHHHHHHhhcCc---ee
Confidence 445555556789999999999999999998 48999999999999999888877765 48
Q ss_pred EEEEcccccCCCCCCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEec
Q 036563 155 LWVEGDAEALCFEDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 155 ~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
+....|+....++ +.||+|++..++++++ ....+++++...++|||++++..+
T Consensus 80 ~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 80 RTRVADLNDFDFP-EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp EEEE-BGCCBS-T-TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEEecchhcccc-CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 8999999887765 5799999988888775 356789999999999999887554
No 69
>PRK14968 putative methyltransferase; Provisional
Probab=99.55 E-value=5.8e-13 Score=110.34 Aligned_cols=148 Identities=20% Similarity=0.225 Sum_probs=107.1
Q ss_pred hhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEE
Q 036563 77 SKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLW 156 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~ 156 (288)
..+...++.+|||+|||+|.++..++.. + .+++++|+++.+++.++++....++.+.++.+
T Consensus 17 ~~~~~~~~~~vLd~G~G~G~~~~~l~~~-~------------------~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~ 77 (188)
T PRK14968 17 ENAVDKKGDRVLEVGTGSGIVAIVAAKN-G------------------KKVVGVDINPYAVECAKCNAKLNNIRNNGVEV 77 (188)
T ss_pred HhhhccCCCEEEEEccccCHHHHHHHhh-c------------------ceEEEEECCHHHHHHHHHHHHHcCCCCcceEE
Confidence 3333356779999999999999998887 2 79999999999999999988777664222888
Q ss_pred EEcccccCCCCCCCeeEEEecccccccc---------------------CHHHHHHHHHhhccCCcEEEEEeccCCChHH
Q 036563 157 VEGDAEALCFEDSTMDGYTIAFGIRNVT---------------------HIEKALAEAYRVLKRGGRFLCLELSHVDIPV 215 (288)
Q Consensus 157 ~~~d~~~~~~~~~~~D~v~~~~~l~~~~---------------------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~ 215 (288)
..+|+.+. +.+.+||+|+++..+.... ....+++++.++|+|||.+++...+
T Consensus 78 ~~~d~~~~-~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~------ 150 (188)
T PRK14968 78 IRSDLFEP-FRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS------ 150 (188)
T ss_pred Eecccccc-ccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc------
Confidence 88887653 3445899999876543211 1356799999999999998864311
Q ss_pred HHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEE--eeCCeeEEEEee
Q 036563 216 FKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYEN--LVGGVVAIHSGL 286 (288)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~--~~~~~~~~~~~~ 286 (288)
+...+++.++++++||+++.... +..+...+..++
T Consensus 151 ------------------------------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 187 (188)
T PRK14968 151 ------------------------------------LTGEDEVLEYLEKLGFEAEVVAEEKFPFEELIVLELV 187 (188)
T ss_pred ------------------------------------cCCHHHHHHHHHHCCCeeeeeeecccCCceEEEEEEe
Confidence 11346788899999998877643 344444444444
No 70
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.54 E-value=1.7e-13 Score=112.21 Aligned_cols=117 Identities=24% Similarity=0.354 Sum_probs=91.5
Q ss_pred HHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 74 RLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 74 ~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
.+.+.+...+..+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++...++. +
T Consensus 22 lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~-----------------~~~~v~~vDi~~~a~~~a~~n~~~n~~~--~ 82 (170)
T PF05175_consen 22 LLLDNLPKHKGGRVLDLGCGSGVISLALAKRG-----------------PDAKVTAVDINPDALELAKRNAERNGLE--N 82 (170)
T ss_dssp HHHHHHHHHTTCEEEEETSTTSHHHHHHHHTS-----------------TCEEEEEEESBHHHHHHHHHHHHHTTCT--T
T ss_pred HHHHHHhhccCCeEEEecCChHHHHHHHHHhC-----------------CCCEEEEEcCCHHHHHHHHHHHHhcCcc--c
Confidence 34444443367799999999999999999986 4568999999999999999999998875 3
Q ss_pred eEEEEcccccCCCCCCCeeEEEeccccccccC-----HHHHHHHHHhhccCCcEEEEEeccC
Q 036563 154 LLWVEGDAEALCFEDSTMDGYTIAFGIRNVTH-----IEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 154 v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~-----~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
+++...|..+. .++++||+|+++..++.-.+ ...+++.+.+.|+|||.++++....
T Consensus 83 v~~~~~d~~~~-~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~ 143 (170)
T PF05175_consen 83 VEVVQSDLFEA-LPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSH 143 (170)
T ss_dssp EEEEESSTTTT-CCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred ccccccccccc-ccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecC
Confidence 99999997653 33678999999998765543 4678999999999999997654433
No 71
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.54 E-value=5.5e-13 Score=115.67 Aligned_cols=143 Identities=23% Similarity=0.351 Sum_probs=107.9
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+...+.. .+.+|||+|||+|.++..+++.. +...++++|+++.+++.++++....++.
T Consensus 78 ~~~l~~~~~-~~~~ilDig~G~G~~~~~l~~~~-----------------~~~~v~~iD~~~~~~~~a~~~~~~~~~~-- 137 (251)
T TIGR03534 78 EAALERLKK-GPLRVLDLGTGSGAIALALAKER-----------------PDARVTAVDISPEALAVARKNAARLGLD-- 137 (251)
T ss_pred HHHHHhccc-CCCeEEEEeCcHhHHHHHHHHHC-----------------CCCEEEEEECCHHHHHHHHHHHHHcCCC--
Confidence 444444442 34689999999999999999876 4579999999999999999998877663
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccC--------------------------HHHHHHHHHhhccCCcEEEEE
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTH--------------------------IEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~--------------------------~~~~l~~~~~~L~pgG~l~i~ 206 (288)
++.+..+|+.+ +++.++||+|+++..+....+ ...+++++.++|+|||.+++.
T Consensus 138 ~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 138 NVTFLQSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred eEEEEECchhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 79999999865 345678999999765432110 135788999999999999862
Q ss_pred eccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCe
Q 036563 207 ELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGV 279 (288)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~ 279 (288)
. . +...++++++|+++||+.+++.....|.
T Consensus 217 ~-~------------------------------------------~~~~~~~~~~l~~~gf~~v~~~~d~~~~ 246 (251)
T TIGR03534 217 I-G------------------------------------------YDQGEAVRALFEAAGFADVETRKDLAGK 246 (251)
T ss_pred E-C------------------------------------------ccHHHHHHHHHHhCCCCceEEEeCCCCC
Confidence 1 0 1134678889999999988887655543
No 72
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=8.4e-13 Score=114.86 Aligned_cols=183 Identities=14% Similarity=0.116 Sum_probs=127.5
Q ss_pred hhHhhhhccccCccccccccCCCCccccccccchhHHhHHHHHHHhHhhHHHhhhhhhhhhhhhHHHHHHHHhhcCCCCC
Q 036563 5 VVTRNLGSRLLPMLSSTSLLHSHATSFGFKEVPAEEKSQLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPG 84 (288)
Q Consensus 5 ~~~~~~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (288)
.++.++..+...+.-+++.-+....++--.+.+..........+.....-.+-.....++...-+.-.+.+++.++...+
T Consensus 80 ~s~~k~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~~~ 159 (300)
T COG2813 80 RSAEKMLEKYGGPTKTDSARHCMRLHYYSENPPPFADEPEWKVYLLGHELTFKTLPGVFSRDKLDKGSRLLLETLPPDLG 159 (300)
T ss_pred HHHHHHHHHhcCccccchHhhcceeEeecCCCCcccchhhhhhhhccCceEEEeCCCCCcCCCcChHHHHHHHhCCccCC
Confidence 46677777777776666644445555544444433333333322221111111223344544444556788899988777
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL 164 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~ 164 (288)
.+|||+|||.|.++..+++.. |..+++.+|+|..+++.+++++..++++ +..+...|....
T Consensus 160 ~~vlDlGCG~Gvlg~~la~~~-----------------p~~~vtmvDvn~~Av~~ar~Nl~~N~~~--~~~v~~s~~~~~ 220 (300)
T COG2813 160 GKVLDLGCGYGVLGLVLAKKS-----------------PQAKLTLVDVNARAVESARKNLAANGVE--NTEVWASNLYEP 220 (300)
T ss_pred CcEEEeCCCccHHHHHHHHhC-----------------CCCeEEEEecCHHHHHHHHHhHHHcCCC--ccEEEEeccccc
Confidence 799999999999999999997 5799999999999999999999988775 335666665443
Q ss_pred CCCCCCeeEEEeccccccccCH-----HHHHHHHHhhccCCcEEEEEec
Q 036563 165 CFEDSTMDGYTIAFGIRNVTHI-----EKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 165 ~~~~~~~D~v~~~~~l~~~~~~-----~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
. .+ +||+|++|..+|.-.+. .++++...+.|++||.|.++-.
T Consensus 221 v-~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 221 V-EG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred c-cc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 2 23 89999999999854432 4789999999999999998654
No 73
>PLN03075 nicotianamine synthase; Provisional
Probab=99.53 E-value=1.1e-12 Score=115.14 Aligned_cols=110 Identities=13% Similarity=0.062 Sum_probs=88.3
Q ss_pred cCCCCCCeEEEecCCccHHHHH-HHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh-cCCCCCceEE
Q 036563 79 LNPFPGMKHLDVAGGTGDVAFR-ILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE-RGYPDKSLLW 156 (288)
Q Consensus 79 l~~~~~~~vLDiG~G~G~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~-~~~~~~~v~~ 156 (288)
+...++.+|+|||||.|.++.. ++..+. ++++++++|+++++++.|++.+.. .++. +++.|
T Consensus 119 ~~~~~p~~VldIGcGpgpltaiilaa~~~----------------p~~~~~giD~d~~ai~~Ar~~~~~~~gL~-~rV~F 181 (296)
T PLN03075 119 HVNGVPTKVAFVGSGPLPLTSIVLAKHHL----------------PTTSFHNFDIDPSANDVARRLVSSDPDLS-KRMFF 181 (296)
T ss_pred hhcCCCCEEEEECCCCcHHHHHHHHHhcC----------------CCCEEEEEeCCHHHHHHHHHHhhhccCcc-CCcEE
Confidence 3333678999999998755443 443332 678999999999999999999854 5665 78999
Q ss_pred EEcccccCCCCCCCeeEEEeccccccc--cCHHHHHHHHHhhccCCcEEEEE
Q 036563 157 VEGDAEALCFEDSTMDGYTIAFGIRNV--THIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 157 ~~~d~~~~~~~~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
..+|+.+.....+.||+|++. +++++ .+..++++++++.|+|||.+++.
T Consensus 182 ~~~Da~~~~~~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 182 HTADVMDVTESLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred EECchhhcccccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 999988764334679999999 88887 58899999999999999999974
No 74
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.52 E-value=1.6e-12 Score=105.54 Aligned_cols=115 Identities=28% Similarity=0.355 Sum_probs=96.0
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
+..+-..+..|.+.++.+++|||||||..+..++... |.++++++|-++++++..+++....+
T Consensus 20 ~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~-----------------p~~~v~AIe~~~~a~~~~~~N~~~fg 82 (187)
T COG2242 20 EEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAG-----------------PSGRVIAIERDEEALELIERNAARFG 82 (187)
T ss_pred HHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhC-----------------CCceEEEEecCHHHHHHHHHHHHHhC
Confidence 3444556778888999999999999999999999544 68999999999999999999999988
Q ss_pred CCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 149 YPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+ +|++++.+++-..-....++|.|+.... .+...+|+.+...|+|||++++.
T Consensus 83 ~--~n~~vv~g~Ap~~L~~~~~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~n 134 (187)
T COG2242 83 V--DNLEVVEGDAPEALPDLPSPDAIFIGGG----GNIEEILEAAWERLKPGGRLVAN 134 (187)
T ss_pred C--CcEEEEeccchHhhcCCCCCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEE
Confidence 6 5999999998654112227999998776 35788999999999999999963
No 75
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.52 E-value=1.1e-12 Score=112.93 Aligned_cols=174 Identities=18% Similarity=0.191 Sum_probs=132.4
Q ss_pred CCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEc
Q 036563 80 NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEG 159 (288)
Q Consensus 80 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~ 159 (288)
....+.+||||+||.|.....++...+. ....+...|.++..++.+++.+.+.++. +-++|.++
T Consensus 132 ~~g~pvrIlDIAaG~GRYvlDal~~~~~---------------~~~~i~LrDys~~Nv~~g~~li~~~gL~-~i~~f~~~ 195 (311)
T PF12147_consen 132 EQGRPVRILDIAAGHGRYVLDALEKHPE---------------RPDSILLRDYSPINVEKGRALIAERGLE-DIARFEQG 195 (311)
T ss_pred hcCCceEEEEeccCCcHHHHHHHHhCCC---------------CCceEEEEeCCHHHHHHHHHHHHHcCCc-cceEEEec
Confidence 3355679999999999999888888741 1268999999999999999999999997 45599999
Q ss_pred ccccC---CCCCCCeeEEEeccccccccCH---HHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccc
Q 036563 160 DAEAL---CFEDSTMDGYTIAFGIRNVTHI---EKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGE 233 (288)
Q Consensus 160 d~~~~---~~~~~~~D~v~~~~~l~~~~~~---~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (288)
|+.+. .-.+...++++++..++.++|. ...|..+.+.+.|||+++. ...|..|.+..+...+..+
T Consensus 196 dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIy--TgQPwHPQle~IAr~LtsH------- 266 (311)
T PF12147_consen 196 DAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIY--TGQPWHPQLEMIARVLTSH------- 266 (311)
T ss_pred CCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEE--cCCCCCcchHHHHHHHhcc-------
Confidence 98664 2223457999999999999873 4579999999999999986 3445555554444433210
Q ss_pred cccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEeee
Q 036563 234 LVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLK 287 (288)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~k 287 (288)
+.-...+.+-.+..++.+++++|||+.+...-..+|++++..|+|
T Consensus 267 ---------r~g~~WvMRrRsq~EmD~Lv~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 267 ---------RDGKAWVMRRRSQAEMDQLVEAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred ---------cCCCceEEEecCHHHHHHHHHHcCCchhhheeccCCceEEEeecC
Confidence 000011233458999999999999999998888899999999876
No 76
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.52 E-value=1.6e-12 Score=118.71 Aligned_cols=142 Identities=19% Similarity=0.207 Sum_probs=109.1
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.+|||+|||+|.++..++... +..+++++|+|+.+++.++++....+ .++.++.+|+.
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~-----------------p~a~VtAVDiS~~ALe~AreNa~~~g---~rV~fi~gDl~ 310 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALER-----------------PDAFVRASDISPPALETARKNAADLG---ARVEFAHGSWF 310 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhC-----------------CCCEEEEEECCHHHHHHHHHHHHHcC---CcEEEEEcchh
Confidence 45689999999999999988775 46899999999999999999987765 36899999986
Q ss_pred cCCC-CCCCeeEEEecccccccc---------------------C----HHHHHHHHHhhccCCcEEEEEeccCCChHHH
Q 036563 163 ALCF-EDSTMDGYTIAFGIRNVT---------------------H----IEKALAEAYRVLKRGGRFLCLELSHVDIPVF 216 (288)
Q Consensus 163 ~~~~-~~~~~D~v~~~~~l~~~~---------------------~----~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~ 216 (288)
+... ..++||+|+++....... + ...+++.+.+.|+|||.+++ |...
T Consensus 311 e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil-EiG~------ 383 (423)
T PRK14966 311 DTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL-EHGF------ 383 (423)
T ss_pred ccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE-EECc------
Confidence 5432 235799999987531110 0 23567777889999999874 2211
Q ss_pred HHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEeee
Q 036563 217 KELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLK 287 (288)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~k 287 (288)
...+.+++++++.||..+++.....|...++.+++
T Consensus 384 ------------------------------------~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~~ 418 (423)
T PRK14966 384 ------------------------------------DQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGKY 418 (423)
T ss_pred ------------------------------------cHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEEE
Confidence 13567889999999999999888888888887764
No 77
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.51 E-value=1.3e-12 Score=115.55 Aligned_cols=141 Identities=17% Similarity=0.266 Sum_probs=107.2
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL 164 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~ 164 (288)
.+|||+|||+|.++..++... +..+++++|+|+.+++.++++....++. .++.+..+|+.+.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~-----------------~~~~v~avDis~~al~~a~~n~~~~~~~-~~v~~~~~d~~~~ 177 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF-----------------PNAEVIAVDISPDALAVAEENAEKNQLE-HRVEFIQSNLFEP 177 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC-----------------CCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEECchhcc
Confidence 689999999999999999886 4589999999999999999998877764 4699999998653
Q ss_pred CCCCCCeeEEEecccc-------------cccc------------CHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHH
Q 036563 165 CFEDSTMDGYTIAFGI-------------RNVT------------HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKEL 219 (288)
Q Consensus 165 ~~~~~~~D~v~~~~~l-------------~~~~------------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~ 219 (288)
++..+||+|+++... .+.+ ....++.++.+.|+|||++++ |....
T Consensus 178 -~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~-e~g~~-------- 247 (284)
T TIGR00536 178 -LAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC-EIGNW-------- 247 (284)
T ss_pred -CcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE-EECcc--------
Confidence 334479999997431 1111 235678899999999999875 22110
Q ss_pred HHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHH-HcCCcEEEEEEeeCCeeEEEEeee
Q 036563 220 YDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMIS-DAGFQKVEYENLVGGVVAIHSGLK 287 (288)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~aGf~~v~~~~~~~~~~~~~~~~k 287 (288)
..+.+.+++. +.||..+++.....|...++.+++
T Consensus 248 ----------------------------------q~~~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~~~ 282 (284)
T TIGR00536 248 ----------------------------------QQKSLKELLRIKFTWYDVENGRDLNGKERVVLGFY 282 (284)
T ss_pred ----------------------------------HHHHHHHHHHhcCCCceeEEecCCCCCceEEEEEe
Confidence 2345667777 468988888777778777777654
No 78
>PTZ00146 fibrillarin; Provisional
Probab=99.51 E-value=9.9e-13 Score=114.90 Aligned_cols=106 Identities=19% Similarity=0.183 Sum_probs=80.8
Q ss_pred hcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 78 KLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
.+...++.+|||+|||+|.++..+++..+ +...|+++|+++.|.+......... +|+.++
T Consensus 127 ~l~IkpG~~VLDLGaG~G~~t~~lAdiVG----------------~~G~VyAVD~s~r~~~dLl~~ak~r----~NI~~I 186 (293)
T PTZ00146 127 NIPIKPGSKVLYLGAASGTTVSHVSDLVG----------------PEGVVYAVEFSHRSGRDLTNMAKKR----PNIVPI 186 (293)
T ss_pred eeccCCCCEEEEeCCcCCHHHHHHHHHhC----------------CCCEEEEEECcHHHHHHHHHHhhhc----CCCEEE
Confidence 44567889999999999999999999975 4578999999998665554443332 578899
Q ss_pred EcccccC---CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 158 EGDAEAL---CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 158 ~~d~~~~---~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
..|+... ....+++|+|++... ..++...++.++.++|||||.|++
T Consensus 187 ~~Da~~p~~y~~~~~~vDvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 187 IEDARYPQKYRMLVPMVDVIFADVA--QPDQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred ECCccChhhhhcccCCCCEEEEeCC--CcchHHHHHHHHHHhccCCCEEEE
Confidence 9998642 223457999999874 233445567789999999999997
No 79
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.51 E-value=4.3e-13 Score=113.68 Aligned_cols=112 Identities=20% Similarity=0.246 Sum_probs=91.6
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
....+.+.+...++.+|||||||+|..+..+++..+ +..+++++|+++++++.+++++...++
T Consensus 64 ~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~----------------~~~~V~~vE~~~~~~~~a~~~l~~~g~- 126 (212)
T PRK13942 64 MVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVG----------------KSGKVVTIERIPELAEKAKKTLKKLGY- 126 (212)
T ss_pred HHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcC----------------CCCEEEEEeCCHHHHHHHHHHHHHcCC-
Confidence 335667777888899999999999999998888764 357999999999999999999987776
Q ss_pred CCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 151 DKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 151 ~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
.++.++.+|+.....+..+||+|++......+ .+.+.+.|+|||.+++.
T Consensus 127 -~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~~~------~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 127 -DNVEVIVGDGTLGYEENAPYDRIYVTAAGPDI------PKPLIEQLKDGGIMVIP 175 (212)
T ss_pred -CCeEEEECCcccCCCcCCCcCEEEECCCcccc------hHHHHHhhCCCcEEEEE
Confidence 47999999987655556789999998766543 24567789999999874
No 80
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.51 E-value=2.2e-12 Score=113.51 Aligned_cols=153 Identities=21% Similarity=0.283 Sum_probs=110.7
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
+.+.+.......++.+|||+|||+|.++..++... +..+++++|+++.+++.++++.. ....
T Consensus 96 l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~-----------------~~~~v~~iDis~~~l~~a~~n~~-~~~~ 157 (275)
T PRK09328 96 LVEWALEALLLKEPLRVLDLGTGSGAIALALAKER-----------------PDAEVTAVDISPEALAVARRNAK-HGLG 157 (275)
T ss_pred HHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHC-----------------CCCEEEEEECCHHHHHHHHHHHH-hCCC
Confidence 33444444455567899999999999999999886 46899999999999999999876 2222
Q ss_pred CCceEEEEcccccCCCCCCCeeEEEeccccccc--------------------------cCHHHHHHHHHhhccCCcEEE
Q 036563 151 DKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNV--------------------------THIEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 151 ~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~--------------------------~~~~~~l~~~~~~L~pgG~l~ 204 (288)
.++.+..+|+... .+.++||+|+++...... .....+++++.++|+|||.++
T Consensus 158 -~~i~~~~~d~~~~-~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~ 235 (275)
T PRK09328 158 -ARVEFLQGDWFEP-LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLL 235 (275)
T ss_pred -CcEEEEEccccCc-CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEE
Confidence 5799999997543 234689999997543211 112557888889999999998
Q ss_pred EEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEE
Q 036563 205 CLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHS 284 (288)
Q Consensus 205 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~ 284 (288)
+. ... ...+.+.+++++.||..++......|...+..
T Consensus 236 ~e-~g~------------------------------------------~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~ 272 (275)
T PRK09328 236 LE-IGY------------------------------------------DQGEAVRALLAAAGFADVETRKDLAGRDRVVL 272 (275)
T ss_pred EE-ECc------------------------------------------hHHHHHHHHHHhCCCceeEEecCCCCCceEEE
Confidence 62 111 02356888999999998887655556666665
Q ss_pred ee
Q 036563 285 GL 286 (288)
Q Consensus 285 ~~ 286 (288)
++
T Consensus 273 ~~ 274 (275)
T PRK09328 273 GR 274 (275)
T ss_pred EE
Confidence 54
No 81
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.50 E-value=1.9e-12 Score=114.36 Aligned_cols=142 Identities=23% Similarity=0.297 Sum_probs=105.3
Q ss_pred hcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 78 KLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
.+...++.+|||+|||+|.++..++... +..+++++|+|+.+++.++++....++. .++.+.
T Consensus 116 ~~~~~~~~~vLDlG~GsG~i~~~la~~~-----------------~~~~v~avDis~~al~~A~~n~~~~~~~-~~i~~~ 177 (284)
T TIGR03533 116 WLEPEPVKRILDLCTGSGCIAIACAYAF-----------------PEAEVDAVDISPDALAVAEINIERHGLE-DRVTLI 177 (284)
T ss_pred HhccCCCCEEEEEeCchhHHHHHHHHHC-----------------CCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEE
Confidence 3333345689999999999999999886 4689999999999999999999887765 579999
Q ss_pred EcccccCCCCCCCeeEEEeccccc-------------ccc------------CHHHHHHHHHhhccCCcEEEEEeccCCC
Q 036563 158 EGDAEALCFEDSTMDGYTIAFGIR-------------NVT------------HIEKALAEAYRVLKRGGRFLCLELSHVD 212 (288)
Q Consensus 158 ~~d~~~~~~~~~~~D~v~~~~~l~-------------~~~------------~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 212 (288)
.+|+.+. +++++||+|+++.... +.+ ....+++.+.+.|+|||++++ |...
T Consensus 178 ~~D~~~~-~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~-e~g~-- 253 (284)
T TIGR03533 178 QSDLFAA-LPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV-EVGN-- 253 (284)
T ss_pred ECchhhc-cCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE-EECc--
Confidence 9997542 3445799999974321 111 124578899999999999985 2211
Q ss_pred hHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEE
Q 036563 213 IPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAI 282 (288)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~ 282 (288)
+.+.+.+++.++||.-........|++..
T Consensus 254 -----------------------------------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 282 (284)
T TIGR03533 254 -----------------------------------------SMEALEEAYPDVPFTWLEFENGGDGVFLL 282 (284)
T ss_pred -----------------------------------------CHHHHHHHHHhCCCceeeecCCCcEEEEE
Confidence 23567778888888877776665565543
No 82
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.50 E-value=3.4e-13 Score=112.68 Aligned_cols=160 Identities=21% Similarity=0.324 Sum_probs=114.5
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL 164 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~ 164 (288)
.+|||+|||.|.....+++..+. ++..++++|.|+.+++..+++..... .++.....|+...
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n---------------~~l~v~acDfsp~Ai~~vk~~~~~~e---~~~~afv~Dlt~~ 134 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPN---------------NRLKVYACDFSPRAIELVKKSSGYDE---SRVEAFVWDLTSP 134 (264)
T ss_pred hhheeeccCCCcccchhhhcCCC---------------CCeEEEEcCCChHHHHHHHhccccch---hhhcccceeccch
Confidence 38999999999999999888631 34899999999999999988764432 4555566665442
Q ss_pred ----CCCCCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCC
Q 036563 165 ----CFEDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGD 238 (288)
Q Consensus 165 ----~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (288)
+...+++|+|++.++|..+. ....++++++++|||||.+++-++...+-..++.-..... .....+-++
T Consensus 135 ~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i-----~~nfYVRgD 209 (264)
T KOG2361|consen 135 SLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCI-----SENFYVRGD 209 (264)
T ss_pred hccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCcee-----ecceEEccC
Confidence 45678899999999998775 4578999999999999999998887765444332211110 011112222
Q ss_pred CcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEe
Q 036563 239 RGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275 (288)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 275 (288)
.. ...|++.+++.++|.++||..++....
T Consensus 210 GT--------~~YfF~~eeL~~~f~~agf~~~~~~~~ 238 (264)
T KOG2361|consen 210 GT--------RAYFFTEEELDELFTKAGFEEVQLEVD 238 (264)
T ss_pred Cc--------eeeeccHHHHHHHHHhcccchhcccce
Confidence 21 113779999999999999998876543
No 83
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.50 E-value=2.1e-13 Score=119.21 Aligned_cols=113 Identities=15% Similarity=0.140 Sum_probs=85.2
Q ss_pred CCCCeEEEecCCccH----HHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh----cCCC---
Q 036563 82 FPGMKHLDVAGGTGD----VAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE----RGYP--- 150 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~----~~~~--- 150 (288)
.++.+|+|+|||||. ++..+.+.... ....+.+|+|+|+|+.|++.|++.... .+++
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~------------~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~ 165 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPK------------AREPDVKILATDIDLKALEKARAGIYPERELEDLPKAL 165 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhh------------cCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHH
Confidence 445799999999997 44455554320 000247899999999999999886411 0000
Q ss_pred ------------------CCceEEEEcccccCCCCCCCeeEEEeccccccccC--HHHHHHHHHhhccCCcEEEEE
Q 036563 151 ------------------DKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 151 ------------------~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~ 206 (288)
..++.|.+.|+.+.+++.++||+|+|.++++++++ ..++++++++.|+|||++++.
T Consensus 166 ~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 166 LARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred HhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 13689999999887766788999999999999964 457999999999999999974
No 84
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.49 E-value=2.8e-13 Score=113.97 Aligned_cols=101 Identities=17% Similarity=0.146 Sum_probs=83.6
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.+|||+|||+|..+..+.+.. +..+++|+|+|+.|++.++++. +++.+..+|+.
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~-----------------~~~~v~giDiS~~~l~~A~~~~-------~~~~~~~~d~~ 98 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLL-----------------PFKHIYGVEINEYAVEKAKAYL-------PNINIIQGSLF 98 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhC-----------------CCCeEEEEECCHHHHHHHHhhC-------CCCcEEEeecc
Confidence 46789999999999999998875 3589999999999999998764 35677888887
Q ss_pred cCCCCCCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEeccC
Q 036563 163 ALCFEDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 163 ~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
. ++++++||+|+++.+++|++ +..++++++.+++ ++++++.+...
T Consensus 99 ~-~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 99 D-PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred C-CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 7 77788999999999999985 3567888888887 56788777644
No 85
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.49 E-value=8.7e-13 Score=112.09 Aligned_cols=110 Identities=18% Similarity=0.240 Sum_probs=89.8
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..+.+.+...++.+|||+|||+|..+..+++..+ +..+++++|+++.+++.+++++...++ .
T Consensus 67 ~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~----------------~~g~V~~vD~~~~~~~~A~~~~~~~g~--~ 128 (215)
T TIGR00080 67 AMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVG----------------RDGLVVSIERIPELAEKAERRLRKLGL--D 128 (215)
T ss_pred HHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhC----------------CCCEEEEEeCCHHHHHHHHHHHHHCCC--C
Confidence 4566777778889999999999999999988863 346799999999999999999988876 4
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
++.+..+|+........+||+|++.....++ .+.+.+.|+|||++++.
T Consensus 129 ~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 129 NVIVIVGDGTQGWEPLAPYDRIYVTAAGPKI------PEALIDQLKEGGILVMP 176 (215)
T ss_pred CeEEEECCcccCCcccCCCCEEEEcCCcccc------cHHHHHhcCcCcEEEEE
Confidence 7999999987654344689999988765443 34578899999999864
No 86
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.48 E-value=7.7e-13 Score=119.47 Aligned_cols=115 Identities=21% Similarity=0.226 Sum_probs=92.7
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
....++......++.+|||+|||+|.++..++.. +..++++|+++.|+..+++++...++.
T Consensus 170 la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~-------------------~~~v~g~Di~~~~~~~a~~nl~~~g~~ 230 (329)
T TIGR01177 170 LARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM-------------------GAKVIGCDIDWKMVAGARINLEHYGIE 230 (329)
T ss_pred HHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh-------------------CCeEEEEcCCHHHHHHHHHHHHHhCCC
Confidence 3455666666677889999999999998776543 378999999999999999999888775
Q ss_pred CCceEEEEcccccCCCCCCCeeEEEeccccccc--------cC-HHHHHHHHHhhccCCcEEEEE
Q 036563 151 DKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNV--------TH-IEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 151 ~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~--------~~-~~~~l~~~~~~L~pgG~l~i~ 206 (288)
++.+..+|+.+++..+++||+|+++..+... .+ ...+++++.++|+|||++++.
T Consensus 231 --~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~ 293 (329)
T TIGR01177 231 --DFFVKRGDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA 293 (329)
T ss_pred --CCeEEecchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence 4889999999888777899999998653211 01 367899999999999999864
No 87
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.48 E-value=1.4e-12 Score=108.96 Aligned_cols=106 Identities=21% Similarity=0.270 Sum_probs=87.2
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
...+|||||||+|.++..+++.. |...++++|+++.+++.++++....++. ++.++.+|+.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~-----------------p~~~v~gvD~~~~~l~~a~~~~~~~~l~--ni~~i~~d~~ 76 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN-----------------PDKNFLGIEIHTPIVLAANNKANKLGLK--NLHVLCGDAN 76 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC-----------------CCCCEEEEEeeHHHHHHHHHHHHHhCCC--CEEEEccCHH
Confidence 34589999999999999999887 5689999999999999999988877763 8999999997
Q ss_pred cCC---CCCCCeeEEEeccccccccC--------HHHHHHHHHhhccCCcEEEEEe
Q 036563 163 ALC---FEDSTMDGYTIAFGIRNVTH--------IEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 163 ~~~---~~~~~~D~v~~~~~l~~~~~--------~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
.+. ++++++|.|++++...+... ...+++++.++|+|||.|++..
T Consensus 77 ~~~~~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 77 ELLDKFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred HHHHhhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 643 44568999998876443322 1568999999999999998754
No 88
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.48 E-value=7e-13 Score=116.66 Aligned_cols=107 Identities=21% Similarity=0.310 Sum_probs=82.8
Q ss_pred HHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 74 RLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 74 ~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
.+.+.+. .+..+|||+|||+|.++..+++..+.. ....++++|+|+.|++.++++. ++
T Consensus 77 ~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~--------------~~~~v~giD~s~~~l~~A~~~~-------~~ 134 (272)
T PRK11088 77 LLAERLD-EKATALLDIGCGEGYYTHALADALPEI--------------TTMQLFGLDISKVAIKYAAKRY-------PQ 134 (272)
T ss_pred HHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccc--------------cCCeEEEECCCHHHHHHHHHhC-------CC
Confidence 3333333 345689999999999999998875200 0247999999999999987653 46
Q ss_pred eEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEecc
Q 036563 154 LLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 154 v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
+.+..+|+.++++++++||+|++.+.. ..++++.++|+|||.++++...
T Consensus 135 ~~~~~~d~~~lp~~~~sfD~I~~~~~~-------~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 135 VTFCVASSHRLPFADQSLDAIIRIYAP-------CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred CeEEEeecccCCCcCCceeEEEEecCC-------CCHHHHHhhccCCCEEEEEeCC
Confidence 889999999889888899999986541 2367899999999999987543
No 89
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.47 E-value=1.7e-12 Score=112.80 Aligned_cols=130 Identities=22% Similarity=0.315 Sum_probs=94.6
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||+|||+|..+..+.+.. ..+++++|+++.+++.++++....++. .++.+..++
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g------------------~~~v~giDis~~~l~~A~~n~~~~~~~-~~~~~~~~~- 177 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLG------------------AKKVLAVDIDPQAVEAARENAELNGVE-LNVYLPQGD- 177 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcC------------------CCeEEEEECCHHHHHHHHHHHHHcCCC-ceEEEccCC-
Confidence 457899999999999888766542 246999999999999999998776543 233332222
Q ss_pred ccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcc
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGS 241 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (288)
.+||+|+++...+ ....+++++.++|+|||.+++......
T Consensus 178 -------~~fD~Vvani~~~---~~~~l~~~~~~~LkpgG~lilsgi~~~------------------------------ 217 (250)
T PRK00517 178 -------LKADVIVANILAN---PLLELAPDLARLLKPGGRLILSGILEE------------------------------ 217 (250)
T ss_pred -------CCcCEEEEcCcHH---HHHHHHHHHHHhcCCCcEEEEEECcHh------------------------------
Confidence 2699999875422 246788999999999999997543210
Q ss_pred hhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEE
Q 036563 242 YQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHS 284 (288)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~ 284 (288)
..+++.+.+++.||+++.... .++...+..
T Consensus 218 ------------~~~~v~~~l~~~Gf~~~~~~~-~~~W~~~~~ 247 (250)
T PRK00517 218 ------------QADEVLEAYEEAGFTLDEVLE-RGEWVALVG 247 (250)
T ss_pred ------------hHHHHHHHHHHCCCEEEEEEE-eCCEEEEEE
Confidence 346788899999999888765 345555433
No 90
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.45 E-value=1.5e-12 Score=117.71 Aligned_cols=118 Identities=17% Similarity=0.179 Sum_probs=93.6
Q ss_pred HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 72 ~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
.+.+.+.+......+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++...++.
T Consensus 185 t~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~-----------------p~~~v~~vDis~~Al~~A~~nl~~n~l~- 246 (342)
T PRK09489 185 SQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHS-----------------PKIRLTLSDVSAAALESSRATLAANGLE- 246 (342)
T ss_pred HHHHHHhccccCCCeEEEeccCcCHHHHHHHHhC-----------------CCCEEEEEECCHHHHHHHHHHHHHcCCC-
Confidence 3455666665556789999999999999999886 4579999999999999999998887653
Q ss_pred CceEEEEcccccCCCCCCCeeEEEecccccccc-----CHHHHHHHHHhhccCCcEEEEEeccCC
Q 036563 152 KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVT-----HIEKALAEAYRVLKRGGRFLCLELSHV 211 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~-----~~~~~l~~~~~~L~pgG~l~i~~~~~~ 211 (288)
.++...|+... ..++||+|+++..+|... ....+++++.+.|+|||.++++.....
T Consensus 247 --~~~~~~D~~~~--~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l 307 (342)
T PRK09489 247 --GEVFASNVFSD--IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANAFL 307 (342)
T ss_pred --CEEEEcccccc--cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCC
Confidence 46677776542 356899999999988532 347899999999999999998765443
No 91
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.44 E-value=4.5e-12 Score=105.47 Aligned_cols=196 Identities=15% Similarity=0.114 Sum_probs=119.4
Q ss_pred hHHHHHHHhHhhHHHhhhhhhhh--hhhhHHHHHHHHhhcCCC------CCCeEEEecCCccHHHHHHHHhhhhhhhhhh
Q 036563 42 SQLVSNVFSSVAKNYDLMNDLMS--GGLHRLWKDRLVSKLNPF------PGMKHLDVAGGTGDVAFRILDTVNSIKRRAL 113 (288)
Q Consensus 42 ~~~~~~~~~~~~~~y~~~~~~~~--~~~~~~~~~~~~~~l~~~------~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~ 113 (288)
.+.-.+||+++...-+-+...+. ...+-...+.++..+... ...+.||+|||-|+.+..++-.+-
T Consensus 6 y~~a~~YW~~v~atvdGMLGG~~~is~~Di~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~f------- 78 (218)
T PF05891_consen 6 YEKAKEYWENVPATVDGMLGGFGHISRIDIQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPVF------- 78 (218)
T ss_dssp HHHHHHHHHTS-SSHHHHTTT-GGGHHHHHHHHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC--------
T ss_pred HHHHHHHHcCCCCCccccccCCCCCChHHHHHHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHhc-------
Confidence 34456677776666664332221 111112234444444322 346899999999999987766542
Q ss_pred hcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccC--HHHHHH
Q 036563 114 QDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTH--IEKALA 191 (288)
Q Consensus 114 ~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~--~~~~l~ 191 (288)
.+|..+|+.+..++.|++.+..... .-.++++..++++..+..+||+|++.+++.|++| ...+|+
T Consensus 79 -----------~~VDlVEp~~~Fl~~a~~~l~~~~~--~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~ 145 (218)
T PF05891_consen 79 -----------DEVDLVEPVEKFLEQAKEYLGKDNP--RVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLK 145 (218)
T ss_dssp -----------SEEEEEES-HHHHHHHHHHTCCGGC--CEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHH
T ss_pred -----------CEeEEeccCHHHHHHHHHHhcccCC--CcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHH
Confidence 7899999999999999987655211 2457788888887655679999999999999985 578999
Q ss_pred HHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEE
Q 036563 192 EAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVE 271 (288)
Q Consensus 192 ~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~ 271 (288)
+|+..|+|+|.+++-|....... ..+.....+. ..+.+.++++|++||++++.
T Consensus 146 RCk~~L~~~G~IvvKEN~~~~~~------------------~~~D~~DsSv---------TRs~~~~~~lF~~AGl~~v~ 198 (218)
T PF05891_consen 146 RCKQALKPNGVIVVKENVSSSGF------------------DEFDEEDSSV---------TRSDEHFRELFKQAGLRLVK 198 (218)
T ss_dssp HHHHHEEEEEEEEEEEEEESSSE------------------EEEETTTTEE---------EEEHHHHHHHHHHCT-EEEE
T ss_pred HHHHhCcCCcEEEEEecCCCCCC------------------cccCCccCee---------ecCHHHHHHHHHHcCCEEEE
Confidence 99999999999998765543210 0111111111 12568899999999999998
Q ss_pred EEEe---eCCeeEEEE
Q 036563 272 YENL---VGGVVAIHS 284 (288)
Q Consensus 272 ~~~~---~~~~~~~~~ 284 (288)
.+.- ..+.+.+..
T Consensus 199 ~~~Q~~fP~~L~pV~m 214 (218)
T PF05891_consen 199 EEKQKGFPKELYPVRM 214 (218)
T ss_dssp EEE-TT--TTS-EEEE
T ss_pred eccccCCCccceEEEE
Confidence 7643 335555543
No 92
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.44 E-value=8.3e-12 Score=111.41 Aligned_cols=102 Identities=21% Similarity=0.256 Sum_probs=82.2
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL 164 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~ 164 (288)
.+|||+|||+|.++..++... +..+++++|+|+.+++.++++....++. .++.+..+|+.+.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~-----------------p~~~V~avDis~~al~~A~~n~~~~~l~-~~i~~~~~D~~~~ 196 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF-----------------PDAEVDAVDISPDALAVAEINIERHGLE-DRVTLIESDLFAA 196 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC-----------------CCCEEEEEeCCHHHHHHHHHHHHHhCCC-CcEEEEECchhhh
Confidence 689999999999999999886 4689999999999999999999887765 5799999997542
Q ss_pred CCCCCCeeEEEeccccc-------------ccc------------CHHHHHHHHHhhccCCcEEEE
Q 036563 165 CFEDSTMDGYTIAFGIR-------------NVT------------HIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 165 ~~~~~~~D~v~~~~~l~-------------~~~------------~~~~~l~~~~~~L~pgG~l~i 205 (288)
++..+||+|+++.... +.+ ....+++++.+.|+|||.+++
T Consensus 197 -l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 197 -LPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred -CCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 2345799999974321 111 124678999999999999985
No 93
>PRK14967 putative methyltransferase; Provisional
Probab=99.44 E-value=1.1e-11 Score=105.87 Aligned_cols=111 Identities=19% Similarity=0.182 Sum_probs=84.0
Q ss_pred hcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 78 KLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
.....++.+|||+|||+|.++..++... ..+++++|+++.+++.++++....+. ++.+.
T Consensus 31 ~~~~~~~~~vLDlGcG~G~~~~~la~~~------------------~~~v~~vD~s~~~l~~a~~n~~~~~~---~~~~~ 89 (223)
T PRK14967 31 AEGLGPGRRVLDLCTGSGALAVAAAAAG------------------AGSVTAVDISRRAVRSARLNALLAGV---DVDVR 89 (223)
T ss_pred hcccCCCCeEEEecCCHHHHHHHHHHcC------------------CCeEEEEECCHHHHHHHHHHHHHhCC---eeEEE
Confidence 3344567899999999999998887752 25899999999999999988876553 57888
Q ss_pred EcccccCCCCCCCeeEEEeccccccccC---------------------HHHHHHHHHhhccCCcEEEEEeccC
Q 036563 158 EGDAEALCFEDSTMDGYTIAFGIRNVTH---------------------IEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 158 ~~d~~~~~~~~~~~D~v~~~~~l~~~~~---------------------~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
.+|+... +++++||+|+++..+..... ...+++++.++|+|||.++++....
T Consensus 90 ~~d~~~~-~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 90 RGDWARA-VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred ECchhhh-ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 8887653 34568999999864332111 3557889999999999999754433
No 94
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.44 E-value=1.6e-11 Score=102.84 Aligned_cols=116 Identities=22% Similarity=0.271 Sum_probs=89.1
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
+..+..+...+...++.+|||+|||+|.++..++... +..+++++|+++.+++.+++++...+
T Consensus 26 ~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~-----------------~~~~V~~vD~s~~~~~~a~~n~~~~~ 88 (196)
T PRK07402 26 REVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLC-----------------PKGRVIAIERDEEVVNLIRRNCDRFG 88 (196)
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHC-----------------CCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence 3344456677777778899999999999999988764 45899999999999999999988776
Q ss_pred CCCCceEEEEccccc-CCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 149 YPDKSLLWVEGDAEA-LCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~-~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
. .+++++.+|+.. +......+|.+++.. ..+...+++++.+.|+|||++++..
T Consensus 89 ~--~~v~~~~~d~~~~~~~~~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 89 V--KNVEVIEGSAPECLAQLAPAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred C--CCeEEEECchHHHHhhCCCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEe
Confidence 6 378999998754 222223457665432 2356789999999999999999754
No 95
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.42 E-value=5.4e-12 Score=118.05 Aligned_cols=121 Identities=18% Similarity=0.241 Sum_probs=96.5
Q ss_pred HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 72 ~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
...+...+...++.+|||+|||+|..+..+++..+ +.++++++|+++.+++.+++++...++.
T Consensus 241 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~----------------~~g~v~a~D~~~~rl~~~~~n~~r~g~~- 303 (434)
T PRK14901 241 AQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMG----------------DQGEIWAVDRSASRLKKLQENAQRLGLK- 303 (434)
T ss_pred HHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhC----------------CCceEEEEcCCHHHHHHHHHHHHHcCCC-
Confidence 34455667778889999999999999999998864 3479999999999999999999988874
Q ss_pred CceEEEEcccccCC----CCCCCeeEEEecc------ccccccC----------------HHHHHHHHHhhccCCcEEEE
Q 036563 152 KSLLWVEGDAEALC----FEDSTMDGYTIAF------GIRNVTH----------------IEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 152 ~~v~~~~~d~~~~~----~~~~~~D~v~~~~------~l~~~~~----------------~~~~l~~~~~~L~pgG~l~i 205 (288)
++.++.+|+...+ ...++||.|++.. ++++.++ ..++|.++.+.|||||.++.
T Consensus 304 -~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvy 382 (434)
T PRK14901 304 -SIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVY 382 (434)
T ss_pred -eEEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 6999999988764 3356899999753 2333222 24679999999999999997
Q ss_pred EeccC
Q 036563 206 LELSH 210 (288)
Q Consensus 206 ~~~~~ 210 (288)
.+++.
T Consensus 383 stcsi 387 (434)
T PRK14901 383 ATCTL 387 (434)
T ss_pred EeCCC
Confidence 76654
No 96
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.42 E-value=2.8e-12 Score=108.57 Aligned_cols=110 Identities=14% Similarity=0.045 Sum_probs=84.0
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc----------CCCC
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER----------GYPD 151 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~----------~~~~ 151 (288)
.++.+|||+|||.|..+..++++ +..|+++|+|+.+++.+.+..... ....
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~-------------------G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~ 93 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ-------------------GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRA 93 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC-------------------CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeec
Confidence 45679999999999999999986 489999999999999764321100 0001
Q ss_pred CceEEEEcccccCCCC-CCCeeEEEeccccccccC--HHHHHHHHHhhccCCcEEEEEeccC
Q 036563 152 KSLLWVEGDAEALCFE-DSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~-~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
.++++.++|+.+++.. .++||.|+-..+++|++. ....++.+.++|+|||++++..+..
T Consensus 94 ~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~ 155 (213)
T TIGR03840 94 GNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDY 155 (213)
T ss_pred CceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEc
Confidence 4688999999877532 357999999888888863 4568999999999999877665543
No 97
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.42 E-value=4.1e-12 Score=108.40 Aligned_cols=113 Identities=15% Similarity=0.202 Sum_probs=93.8
Q ss_pred HhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 76 VSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 76 ~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
..+.......+|||+|||+|..+..++++. +..+++++|+++.+.+.|++...-.++. .+++
T Consensus 37 ~~~~~~~~~~~IlDlGaG~G~l~L~la~r~-----------------~~a~I~~VEiq~~~a~~A~~nv~ln~l~-~ri~ 98 (248)
T COG4123 37 AAFAPVPKKGRILDLGAGNGALGLLLAQRT-----------------EKAKIVGVEIQEEAAEMAQRNVALNPLE-ERIQ 98 (248)
T ss_pred HhhcccccCCeEEEecCCcCHHHHHHhccC-----------------CCCcEEEEEeCHHHHHHHHHHHHhCcch-hcee
Confidence 345555557899999999999999999996 3489999999999999999999988887 8999
Q ss_pred EEEcccccCC--CCCCCeeEEEecccccccc------------------CHHHHHHHHHhhccCCcEEEEE
Q 036563 156 WVEGDAEALC--FEDSTMDGYTIAFGIRNVT------------------HIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 156 ~~~~d~~~~~--~~~~~~D~v~~~~~l~~~~------------------~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+++.|+..+. ....+||+|+||..+.... +.+.+++.+.++|||||.+.++
T Consensus 99 v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V 169 (248)
T COG4123 99 VIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV 169 (248)
T ss_pred EehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE
Confidence 9999998873 3445799999988754321 1366799999999999999974
No 98
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=4.4e-12 Score=110.99 Aligned_cols=136 Identities=23% Similarity=0.229 Sum_probs=101.6
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.+|||+|||+|.+++..++.. ..+++++|++|.+++.++.+...+++. ..++....+..
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLG------------------A~~v~g~DiDp~AV~aa~eNa~~N~v~-~~~~~~~~~~~ 222 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLG------------------AKKVVGVDIDPQAVEAARENARLNGVE-LLVQAKGFLLL 222 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcC------------------CceEEEecCCHHHHHHHHHHHHHcCCc-hhhhcccccch
Confidence 67899999999999999998884 377999999999999999999988765 22223333322
Q ss_pred cCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcch
Q 036563 163 ALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSY 242 (288)
Q Consensus 163 ~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (288)
..+ ..++||+|++|-. ..+ ...+...+.++|+|||++++......
T Consensus 223 ~~~-~~~~~DvIVANIL-A~v--l~~La~~~~~~lkpgg~lIlSGIl~~------------------------------- 267 (300)
T COG2264 223 EVP-ENGPFDVIVANIL-AEV--LVELAPDIKRLLKPGGRLILSGILED------------------------------- 267 (300)
T ss_pred hhc-ccCcccEEEehhh-HHH--HHHHHHHHHHHcCCCceEEEEeehHh-------------------------------
Confidence 222 2358999998763 221 35788899999999999997542110
Q ss_pred hhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEE
Q 036563 243 QYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHS 284 (288)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~ 284 (288)
-.+.+.+.++++||.+++.... .+.++++.
T Consensus 268 -----------q~~~V~~a~~~~gf~v~~~~~~-~eW~~i~~ 297 (300)
T COG2264 268 -----------QAESVAEAYEQAGFEVVEVLER-EEWVAIVG 297 (300)
T ss_pred -----------HHHHHHHHHHhCCCeEeEEEec-CCEEEEEE
Confidence 2467788999999999998765 67776655
No 99
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.42 E-value=1.5e-12 Score=99.55 Aligned_cols=104 Identities=23% Similarity=0.331 Sum_probs=86.5
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
|.+|||+|||+|.++..+++.. ..+++++|+++..++.++.++...++. .+++++.+|...
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~------------------~~~~~gvdi~~~~~~~a~~~~~~~~~~-~~~~~~~~D~~~ 61 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG------------------AARVTGVDIDPEAVELARRNLPRNGLD-DRVEVIVGDARD 61 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC------------------TCEEEEEESSHHHHHHHHHHCHHCTTT-TTEEEEESHHHH
T ss_pred CCEEEEcCcchHHHHHHHHHHC------------------CCeEEEEEECHHHHHHHHHHHHHccCC-ceEEEEECchhh
Confidence 4589999999999999999884 289999999999999999999888775 679999999987
Q ss_pred CC--CCCCCeeEEEecccccccc--------CHHHHHHHHHhhccCCcEEEEE
Q 036563 164 LC--FEDSTMDGYTIAFGIRNVT--------HIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 164 ~~--~~~~~~D~v~~~~~l~~~~--------~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
.. +++++||+|+++..+.... ....+++++.++|+|||.++++
T Consensus 62 ~~~~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 62 LPEPLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp HHHTCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred chhhccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 64 6778999999998876432 1357899999999999999875
No 100
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.41 E-value=4e-12 Score=112.71 Aligned_cols=103 Identities=17% Similarity=0.156 Sum_probs=80.5
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||+|||+|.++..++... ..+++++|+++.+++.++++....++. .++.....+.
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g------------------~~~V~avDid~~al~~a~~n~~~n~~~-~~~~~~~~~~ 218 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLG------------------AAKVVGIDIDPLAVESARKNAELNQVS-DRLQVKLIYL 218 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcC------------------CCeEEEEECCHHHHHHHHHHHHHcCCC-cceEEEeccc
Confidence 356899999999999998877642 368999999999999999998877665 4566666653
Q ss_pred ccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
. ...+++||+|+++...+ ....++.++.++|+|||.+++..+
T Consensus 219 ~--~~~~~~fDlVvan~~~~---~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 219 E--QPIEGKADVIVANILAE---VIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred c--cccCCCceEEEEecCHH---HHHHHHHHHHHHcCCCcEEEEEeC
Confidence 2 23356899999976533 346789999999999999997543
No 101
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.41 E-value=3.9e-12 Score=112.15 Aligned_cols=185 Identities=18% Similarity=0.233 Sum_probs=116.7
Q ss_pred cccccccchhHHhHHHHHHHhHh--hH------HHhhh-----------hhhhh--hhhhH---HHHHHHHhhcCCCCCC
Q 036563 30 SFGFKEVPAEEKSQLVSNVFSSV--AK------NYDLM-----------NDLMS--GGLHR---LWKDRLVSKLNPFPGM 85 (288)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~--~~------~y~~~-----------~~~~~--~~~~~---~~~~~~~~~l~~~~~~ 85 (288)
.+....+.++++....+++|..+ .. .|... ...|. .+.|. ...+.+... ..++.
T Consensus 86 ~~~~~~~~~~dW~~~Wk~~~~P~~vg~~~~I~P~w~~~~~~~~~~~I~idPg~AFGTG~H~TT~lcl~~l~~~--~~~g~ 163 (295)
T PF06325_consen 86 EIEIEEIEEEDWEEAWKKYFKPIRVGDRLVIVPSWEEYPEPPDEIVIEIDPGMAFGTGHHPTTRLCLELLEKY--VKPGK 163 (295)
T ss_dssp --EEEE--HHCHHHHHHHH---EEECTTEEEEETT----SSTTSEEEEESTTSSS-SSHCHHHHHHHHHHHHH--SSTTS
T ss_pred ceEEEEeccccchHHHHhcCccEEECCcEEEECCCcccCCCCCcEEEEECCCCcccCCCCHHHHHHHHHHHHh--ccCCC
Confidence 44556777788888888887543 11 12111 11122 22232 222333333 23567
Q ss_pred eEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCC
Q 036563 86 KHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC 165 (288)
Q Consensus 86 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~ 165 (288)
+|||+|||||.+++..++.. ..+++++|+++.+++.++++...+++. .++.+. ... .
T Consensus 164 ~vLDvG~GSGILaiaA~klG------------------A~~v~a~DiDp~Av~~a~~N~~~N~~~-~~~~v~--~~~--~ 220 (295)
T PF06325_consen 164 RVLDVGCGSGILAIAAAKLG------------------AKKVVAIDIDPLAVEAARENAELNGVE-DRIEVS--LSE--D 220 (295)
T ss_dssp EEEEES-TTSHHHHHHHHTT------------------BSEEEEEESSCHHHHHHHHHHHHTT-T-TCEEES--CTS--C
T ss_pred EEEEeCCcHHHHHHHHHHcC------------------CCeEEEecCCHHHHHHHHHHHHHcCCC-eeEEEE--Eec--c
Confidence 99999999999999998874 368999999999999999999999887 455442 211 2
Q ss_pred CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhh
Q 036563 166 FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYL 245 (288)
Q Consensus 166 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (288)
....+||+|++|-...- ...++..+.++|+|||++++......
T Consensus 221 ~~~~~~dlvvANI~~~v---L~~l~~~~~~~l~~~G~lIlSGIl~~---------------------------------- 263 (295)
T PF06325_consen 221 LVEGKFDLVVANILADV---LLELAPDIASLLKPGGYLILSGILEE---------------------------------- 263 (295)
T ss_dssp TCCS-EEEEEEES-HHH---HHHHHHHCHHHEEEEEEEEEEEEEGG----------------------------------
T ss_pred cccccCCEEEECCCHHH---HHHHHHHHHHhhCCCCEEEEccccHH----------------------------------
Confidence 23478999998765332 35678889999999999997543221
Q ss_pred HHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEee
Q 036563 246 VESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGL 286 (288)
Q Consensus 246 ~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~ 286 (288)
..+++.+.+++ ||.+++... .++.+++..-+
T Consensus 264 --------~~~~v~~a~~~-g~~~~~~~~-~~~W~~l~~~K 294 (295)
T PF06325_consen 264 --------QEDEVIEAYKQ-GFELVEERE-EGEWVALVFKK 294 (295)
T ss_dssp --------GHHHHHHHHHT-TEEEEEEEE-ETTEEEEEEEE
T ss_pred --------HHHHHHHHHHC-CCEEEEEEE-ECCEEEEEEEe
Confidence 35678888877 999887765 56777766544
No 102
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.41 E-value=4.3e-12 Score=115.26 Aligned_cols=148 Identities=15% Similarity=0.135 Sum_probs=108.7
Q ss_pred hHHHHHHHhHhhHHHhh--hhhhh-----hhhhh-HHH--HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhh
Q 036563 42 SQLVSNVFSSVAKNYDL--MNDLM-----SGGLH-RLW--KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRR 111 (288)
Q Consensus 42 ~~~~~~~~~~~~~~y~~--~~~~~-----~~~~~-~~~--~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~ 111 (288)
-..+++.++..+..|.. ..... ..... ... .+.+.+.+....+..+||||||+|.++..++...
T Consensus 71 ~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~------ 144 (390)
T PRK14121 71 VGILKKALKIFSELFCADIISHNLAENSKKLSLKKPYILDIDNFLDFISKNQEKILIEIGFGSGRHLLYQAKNN------ 144 (390)
T ss_pred hHHHHHHHHHHHHHhhccccccccccccccccccccccCCHHHHHHHhcCCCCCeEEEEcCcccHHHHHHHHhC------
Confidence 45677788888888852 11110 00000 001 1244555555556689999999999999999997
Q ss_pred hhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC--CCCCCCeeEEEeccccccccCH---
Q 036563 112 ALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL--CFEDSTMDGYTIAFGIRNVTHI--- 186 (288)
Q Consensus 112 ~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~D~v~~~~~l~~~~~~--- 186 (288)
|...++|+|+++.++..+.+++...+++ |+.++.+|+..+ .++++++|.|++++...+....
T Consensus 145 -----------P~~~~iGIEI~~~~i~~a~~ka~~~gL~--NV~~i~~DA~~ll~~~~~~s~D~I~lnFPdPW~KkrHRR 211 (390)
T PRK14121 145 -----------PNKLFIGIEIHTPSIEQVLKQIELLNLK--NLLIINYDARLLLELLPSNSVEKIFVHFPVPWDKKPHRR 211 (390)
T ss_pred -----------CCCCEEEEECCHHHHHHHHHHHHHcCCC--cEEEEECCHHHhhhhCCCCceeEEEEeCCCCccccchhh
Confidence 5789999999999999999998888774 899999998764 4677899999987764433222
Q ss_pred ---HHHHHHHHhhccCCcEEEEEec
Q 036563 187 ---EKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 187 ---~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
..++.++.++|+|||.+.+...
T Consensus 212 lv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 212 VISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred ccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 5789999999999999997543
No 103
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.40 E-value=7.8e-12 Score=108.05 Aligned_cols=110 Identities=25% Similarity=0.333 Sum_probs=90.0
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..+.......+..+|||||+|+|.++..+++.+ |+.+++.+|. |..++.+++ . +
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~-----------------P~l~~~v~Dl-p~v~~~~~~----~----~ 143 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAY-----------------PNLRATVFDL-PEVIEQAKE----A----D 143 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHS-----------------TTSEEEEEE--HHHHCCHHH----T----T
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHC-----------------CCCcceeecc-Hhhhhcccc----c----c
Confidence 344555666666789999999999999999998 6899999997 888888877 1 6
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccC--HHHHHHHHHhhccCC--cEEEEEeccCC
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRG--GRFLCLELSHV 211 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pg--G~l~i~~~~~~ 211 (288)
+++++.+|+. -++|. +|++++.+++|++++ ...+|+++++.|+|| |+|+|.|...+
T Consensus 144 rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~ 203 (241)
T PF00891_consen 144 RVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLP 203 (241)
T ss_dssp TEEEEES-TT-TCCSS--ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEEC
T ss_pred ccccccccHH-hhhcc--ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccC
Confidence 9999999998 55565 999999999999975 467899999999999 99999988755
No 104
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=8.8e-12 Score=105.61 Aligned_cols=110 Identities=19% Similarity=0.292 Sum_probs=99.0
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..+...+...|+++|+|.|.|+|.++..++...+ +.++++.+|+.++.++.|++++...++. +
T Consensus 84 ~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg----------------~~G~v~tyE~r~d~~k~A~~Nl~~~~l~-d 146 (256)
T COG2519 84 GYIVARLGISPGSRVLEAGTGSGALTAYLARAVG----------------PEGHVTTYEIREDFAKTARENLSEFGLG-D 146 (256)
T ss_pred HHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhC----------------CCceEEEEEecHHHHHHHHHHHHHhccc-c
Confidence 4577888999999999999999999999999876 6799999999999999999999998887 5
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
++.+..+|+.+...++ .||.|++ .++++..+++++.++|+|||.+.+
T Consensus 147 ~v~~~~~Dv~~~~~~~-~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~ 193 (256)
T COG2519 147 RVTLKLGDVREGIDEE-DVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVV 193 (256)
T ss_pred ceEEEecccccccccc-ccCEEEE-----cCCChHHHHHHHHHHhCCCcEEEE
Confidence 6999999998876655 8999986 567999999999999999999986
No 105
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.39 E-value=1.6e-11 Score=98.46 Aligned_cols=128 Identities=13% Similarity=0.229 Sum_probs=103.7
Q ss_pred eEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCC
Q 036563 86 KHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC 165 (288)
Q Consensus 86 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~ 165 (288)
+|||+|||.|.+...+++.- -...++|+|.|+.+++.|+......+.+ +.++|.+.|+.+..
T Consensus 70 ~VlDLGtGNG~~L~~L~~eg-----------------f~~~L~GvDYs~~AV~LA~niAe~~~~~-n~I~f~q~DI~~~~ 131 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEG-----------------FQSKLTGVDYSEKAVELAQNIAERDGFS-NEIRFQQLDITDPD 131 (227)
T ss_pred ceeeccCCchHHHHHHHHhc-----------------CCCCccccccCHHHHHHHHHHHHhcCCC-cceeEEEeeccCCc
Confidence 99999999999999999884 2366999999999999998888888876 55999999998877
Q ss_pred CCCCCeeEEEecccccccc---C-----HHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccC
Q 036563 166 FEDSTMDGYTIAFGIRNVT---H-----IEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAG 237 (288)
Q Consensus 166 ~~~~~~D~v~~~~~l~~~~---~-----~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (288)
+..+.||+|+=..++..+. + +...+..+.++|+|||.|+|..++.
T Consensus 132 ~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~--------------------------- 184 (227)
T KOG1271|consen 132 FLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF--------------------------- 184 (227)
T ss_pred ccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc---------------------------
Confidence 7778899998766654432 1 1345788899999999999854322
Q ss_pred CCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEE
Q 036563 238 DRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYEN 274 (288)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 274 (288)
|.+++.+.++..||......+
T Consensus 185 ----------------T~dELv~~f~~~~f~~~~tvp 205 (227)
T KOG1271|consen 185 ----------------TKDELVEEFENFNFEYLSTVP 205 (227)
T ss_pred ----------------cHHHHHHHHhcCCeEEEEeec
Confidence 788999999999998776553
No 106
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.39 E-value=1.7e-11 Score=116.41 Aligned_cols=140 Identities=15% Similarity=0.171 Sum_probs=105.7
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+.+|||+|||+|.++..++... +..+++++|+|+.+++.++++....++. .++.+..+|+..
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~-----------------p~~~v~avDis~~al~~A~~N~~~~~l~-~~v~~~~~D~~~ 200 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL-----------------PNANVIATDISLDAIEVAKSNAIKYEVT-DRIQIIHSNWFE 200 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC-----------------CCCeEEEEECCHHHHHHHHHHHHHcCCc-cceeeeecchhh
Confidence 4689999999999999998876 4689999999999999999998877765 578999999754
Q ss_pred CCCCCCCeeEEEecccccc--------------cc------------CHHHHHHHHHhhccCCcEEEEEeccCCChHHHH
Q 036563 164 LCFEDSTMDGYTIAFGIRN--------------VT------------HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFK 217 (288)
Q Consensus 164 ~~~~~~~~D~v~~~~~l~~--------------~~------------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~ 217 (288)
. .+.++||+|+++..... .+ ....+++++.++|+|||.+++ +...
T Consensus 201 ~-~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l-Eig~------- 271 (506)
T PRK01544 201 N-IEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL-EIGF------- 271 (506)
T ss_pred h-CcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE-EECC-------
Confidence 2 23457999999754211 10 023467888899999999875 3221
Q ss_pred HHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEe
Q 036563 218 ELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSG 285 (288)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~ 285 (288)
...+.+.+++++.||..+++.....|...++.+
T Consensus 272 -----------------------------------~q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~~ 304 (506)
T PRK01544 272 -----------------------------------KQEEAVTQIFLDHGYNIESVYKDLQGHSRVILI 304 (506)
T ss_pred -----------------------------------chHHHHHHHHHhcCCCceEEEecCCCCceEEEe
Confidence 134677888999999988877766676655554
No 107
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.38 E-value=1.2e-11 Score=104.80 Aligned_cols=108 Identities=19% Similarity=0.217 Sum_probs=86.6
Q ss_pred HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 72 ~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
...+.+.+...++.+|||+|||+|..+..+++.. .+++++|+++++++.+++++...++.
T Consensus 67 ~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~-------------------~~v~~vd~~~~~~~~a~~~~~~~~~~- 126 (212)
T PRK00312 67 VARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV-------------------RRVFSVERIKTLQWEAKRRLKQLGLH- 126 (212)
T ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh-------------------CEEEEEeCCHHHHHHHHHHHHHCCCC-
Confidence 3456677777888999999999999998776653 58999999999999999998887764
Q ss_pred CceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 152 KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
++.+..+|........++||+|++...++++ .+.+.+.|+|||.+++.
T Consensus 127 -~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 127 -NVSVRHGDGWKGWPAYAPFDRILVTAAAPEI------PRALLEQLKEGGILVAP 174 (212)
T ss_pred -ceEEEECCcccCCCcCCCcCEEEEccCchhh------hHHHHHhcCCCcEEEEE
Confidence 6899999976543234689999998766544 35678899999999874
No 108
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.38 E-value=1.7e-11 Score=103.63 Aligned_cols=103 Identities=22% Similarity=0.295 Sum_probs=80.2
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcc
Q 036563 81 PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGD 160 (288)
Q Consensus 81 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d 160 (288)
..++.+|||+|||||.++..+++..+ +...|+++|+++ | .+. +++.++++|
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~----------------~~~~V~aVDi~~-~----------~~~--~~v~~i~~D 99 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIG----------------DKGRVIACDILP-M----------DPI--VGVDFLQGD 99 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcC----------------CCceEEEEeccc-c----------cCC--CCcEEEecC
Confidence 35678999999999999999999864 357999999988 2 111 468999999
Q ss_pred cccCC--------CCCCCeeEEEeccccccccCH-----------HHHHHHHHhhccCCcEEEEEeccCCC
Q 036563 161 AEALC--------FEDSTMDGYTIAFGIRNVTHI-----------EKALAEAYRVLKRGGRFLCLELSHVD 212 (288)
Q Consensus 161 ~~~~~--------~~~~~~D~v~~~~~l~~~~~~-----------~~~l~~~~~~L~pgG~l~i~~~~~~~ 212 (288)
+...+ +..++||+|+++.+.+...++ ..+|+++.++|+|||.|++..+....
T Consensus 100 ~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~ 170 (209)
T PRK11188 100 FRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEG 170 (209)
T ss_pred CCChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcC
Confidence 88753 556789999998765544321 45899999999999999986665543
No 109
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=7.8e-11 Score=103.76 Aligned_cols=138 Identities=22% Similarity=0.294 Sum_probs=106.9
Q ss_pred eEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCC
Q 036563 86 KHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC 165 (288)
Q Consensus 86 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~ 165 (288)
+|||+|||+|.++..++.+. +..+|+++|+|+.+++.|+++....++ .++.++.+|....
T Consensus 113 ~ilDlGTGSG~iai~la~~~-----------------~~~~V~a~Dis~~Al~~A~~Na~~~~l--~~~~~~~~dlf~~- 172 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG-----------------PDAEVIAVDISPDALALARENAERNGL--VRVLVVQSDLFEP- 172 (280)
T ss_pred cEEEecCChHHHHHHHHhhC-----------------cCCeEEEEECCHHHHHHHHHHHHHcCC--ccEEEEeeecccc-
Confidence 79999999999999999997 468999999999999999999999877 3566666665432
Q ss_pred CCCCCeeEEEecccccccc-----------C--------------HHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHH
Q 036563 166 FEDSTMDGYTIAFGIRNVT-----------H--------------IEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELY 220 (288)
Q Consensus 166 ~~~~~~D~v~~~~~l~~~~-----------~--------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~ 220 (288)
. .++||+|++|...--.+ + ..+++.++.+.|+|||.+++- ..
T Consensus 173 ~-~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le-~g----------- 239 (280)
T COG2890 173 L-RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE-IG----------- 239 (280)
T ss_pred c-CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE-EC-----------
Confidence 2 23899999987621111 1 145688888999998888752 11
Q ss_pred HHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcC-CcEEEEEEeeCCeeEEEEeee
Q 036563 221 DYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAG-FQKVEYENLVGGVVAIHSGLK 287 (288)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~~v~~~~~~~~~~~~~~~~k 287 (288)
+...+.+.+++++.| |..+......+|...+..+.+
T Consensus 240 -------------------------------~~q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~~ 276 (280)
T COG2890 240 -------------------------------LTQGEAVKALFEDTGFFEIVETLKDLFGRDRVVLAKL 276 (280)
T ss_pred -------------------------------CCcHHHHHHHHHhcCCceEEEEEecCCCceEEEEEEe
Confidence 124578899999999 788888888888888877764
No 110
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.37 E-value=3.6e-11 Score=99.19 Aligned_cols=136 Identities=20% Similarity=0.256 Sum_probs=89.2
Q ss_pred HHHHhhcCCCC-CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 73 DRLVSKLNPFP-GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 73 ~~~~~~l~~~~-~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
+.+++.+...+ ...|-|+|||.+.++..+.+ ..+|+.+|.-.
T Consensus 61 d~iI~~l~~~~~~~viaD~GCGdA~la~~~~~--------------------~~~V~SfDLva----------------- 103 (219)
T PF05148_consen 61 DVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN--------------------KHKVHSFDLVA----------------- 103 (219)
T ss_dssp HHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-----------------------EEEEESS------------------
T ss_pred HHHHHHHHhcCCCEEEEECCCchHHHHHhccc--------------------CceEEEeeccC-----------------
Confidence 34555555444 46899999999999855432 25799999854
Q ss_pred CceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccc
Q 036563 152 KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAI 231 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (288)
.+-.+..+|+...|+++++.|++++..+|.. .+...+|.++.|+|||||.+.|.|...
T Consensus 104 ~n~~Vtacdia~vPL~~~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV~S--------------------- 161 (219)
T PF05148_consen 104 PNPRVTACDIANVPLEDESVDVAVFCLSLMG-TNWPDFIREANRVLKPGGILKIAEVKS--------------------- 161 (219)
T ss_dssp SSTTEEES-TTS-S--TT-EEEEEEES---S-S-HHHHHHHHHHHEEEEEEEEEEEEGG---------------------
T ss_pred CCCCEEEecCccCcCCCCceeEEEEEhhhhC-CCcHHHHHHHHheeccCcEEEEEEecc---------------------
Confidence 2345778999999999999999999888876 478999999999999999999987533
Q ss_pred cccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEeee
Q 036563 232 GELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLK 287 (288)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~k 287 (288)
++.+.+.+.+.+++.||+.... +.....+.++..+|
T Consensus 162 -------------------Rf~~~~~F~~~~~~~GF~~~~~-d~~n~~F~~f~F~K 197 (219)
T PF05148_consen 162 -------------------RFENVKQFIKALKKLGFKLKSK-DESNKHFVLFEFKK 197 (219)
T ss_dssp -------------------G-S-HHHHHHHHHCTTEEEEEE-E--STTEEEEEEEE
T ss_pred -------------------cCcCHHHHHHHHHHCCCeEEec-ccCCCeEEEEEEEE
Confidence 2446788999999999998875 44566666666665
No 111
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.36 E-value=2.2e-11 Score=104.71 Aligned_cols=111 Identities=21% Similarity=0.382 Sum_probs=91.5
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..++.++...||.+|||.|.|+|.++..++..++ +.++++.+|+.++..+.|++++...++. .
T Consensus 30 ~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~----------------p~G~v~t~E~~~~~~~~A~~n~~~~gl~-~ 92 (247)
T PF08704_consen 30 SYILMRLDIRPGSRVLEAGTGSGSLTHALARAVG----------------PTGHVYTYEFREDRAEKARKNFERHGLD-D 92 (247)
T ss_dssp HHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHT----------------TTSEEEEEESSHHHHHHHHHHHHHTTCC-T
T ss_pred HHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhC----------------CCeEEEccccCHHHHHHHHHHHHHcCCC-C
Confidence 4677888999999999999999999999999886 6799999999999999999999999987 7
Q ss_pred ceEEEEcccccCCCC---CCCeeEEEeccccccccCHHHHHHHHHhhc-cCCcEEEE
Q 036563 153 SLLWVEGDAEALCFE---DSTMDGYTIAFGIRNVTHIEKALAEAYRVL-KRGGRFLC 205 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~---~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L-~pgG~l~i 205 (288)
++.+...|+.+..+. +..+|.|++ .++++..++..+.+.| ++||++.+
T Consensus 93 ~v~~~~~Dv~~~g~~~~~~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~ 144 (247)
T PF08704_consen 93 NVTVHHRDVCEEGFDEELESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRICC 144 (247)
T ss_dssp TEEEEES-GGCG--STT-TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEEE
T ss_pred CceeEecceecccccccccCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEEE
Confidence 999999998654332 357999986 5578999999999999 89999986
No 112
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.33 E-value=2.2e-11 Score=103.45 Aligned_cols=110 Identities=14% Similarity=0.030 Sum_probs=82.9
Q ss_pred CCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc----------CC
Q 036563 80 NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER----------GY 149 (288)
Q Consensus 80 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~----------~~ 149 (288)
...++.+|||+|||.|..+..+++. +.+|+++|+|+.+++.+.+..... ..
T Consensus 34 ~~~~~~rvL~~gCG~G~da~~LA~~-------------------G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~ 94 (218)
T PRK13255 34 ALPAGSRVLVPLCGKSLDMLWLAEQ-------------------GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHY 94 (218)
T ss_pred CCCCCCeEEEeCCCChHhHHHHHhC-------------------CCeEEEEccCHHHHHHHHHHcCCCcccccccccccc
Confidence 3345679999999999999999886 489999999999999764321100 00
Q ss_pred CCCceEEEEcccccCCCC-CCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEec
Q 036563 150 PDKSLLWVEGDAEALCFE-DSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 150 ~~~~v~~~~~d~~~~~~~-~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
...++++.++|+.++... ...||.|+-..++++++ .....++.+.++|+|||.++++..
T Consensus 95 ~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~ 156 (218)
T PRK13255 95 QAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTL 156 (218)
T ss_pred ccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 114688999999877432 24799999888888886 346789999999999997655433
No 113
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.32 E-value=7.5e-11 Score=110.15 Aligned_cols=119 Identities=19% Similarity=0.274 Sum_probs=92.6
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..+...+...++.+|||+|||+|..+..+++..+ ..+++++|+++.+++.+++++...++
T Consensus 234 ~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-----------------~~~v~a~D~s~~~l~~~~~n~~~~g~--- 293 (427)
T PRK10901 234 QLAATLLAPQNGERVLDACAAPGGKTAHILELAP-----------------QAQVVALDIDAQRLERVRENLQRLGL--- 293 (427)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcC-----------------CCEEEEEeCCHHHHHHHHHHHHHcCC---
Confidence 4455677778889999999999999999998862 37999999999999999999988765
Q ss_pred ceEEEEcccccCC--CCCCCeeEEEecccccc------cc------C----------HHHHHHHHHhhccCCcEEEEEec
Q 036563 153 SLLWVEGDAEALC--FEDSTMDGYTIAFGIRN------VT------H----------IEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 153 ~v~~~~~d~~~~~--~~~~~~D~v~~~~~l~~------~~------~----------~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
++.++.+|+...+ +..++||.|+++..... -+ . ..++|..+.+.|+|||.+++..+
T Consensus 294 ~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 294 KATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred CeEEEEcCcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 3688899987653 23567999996553211 11 1 13689999999999999998766
Q ss_pred cCC
Q 036563 209 SHV 211 (288)
Q Consensus 209 ~~~ 211 (288)
+..
T Consensus 374 s~~ 376 (427)
T PRK10901 374 SIL 376 (427)
T ss_pred CCC
Confidence 543
No 114
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.32 E-value=1.4e-11 Score=103.65 Aligned_cols=110 Identities=20% Similarity=0.333 Sum_probs=86.8
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..+.+.+..+++.+|||||||+|..+..++...+ +...++++|..+...+.|++++...+..
T Consensus 62 a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg----------------~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-- 123 (209)
T PF01135_consen 62 ARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVG----------------PVGRVVSVERDPELAERARRNLARLGID-- 123 (209)
T ss_dssp HHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHS----------------TTEEEEEEESBHHHHHHHHHHHHHHTTH--
T ss_pred HHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcC----------------ccceEEEECccHHHHHHHHHHHHHhccC--
Confidence 4677888889999999999999999999999875 4578999999999999999999988774
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
++.+..+|.........+||.|++......++ ..+.+.|++||++++.
T Consensus 124 nv~~~~gdg~~g~~~~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 124 NVEVVVGDGSEGWPEEAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAP 171 (209)
T ss_dssp SEEEEES-GGGTTGGG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEE
T ss_pred ceeEEEcchhhccccCCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEE
Confidence 89999999876544456899999988775442 2367779999999974
No 115
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.32 E-value=4.4e-12 Score=106.08 Aligned_cols=130 Identities=22% Similarity=0.269 Sum_probs=86.6
Q ss_pred HhHhhHHHhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEE
Q 036563 49 FSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIY 128 (288)
Q Consensus 49 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~ 128 (288)
|+..+..|......+. ..|...+...-+. ...++|+|||+|..+..++.+. .+|+
T Consensus 5 ~~~~a~~Y~~ARP~YP----tdw~~~ia~~~~~--h~~a~DvG~G~Gqa~~~iae~~-------------------k~VI 59 (261)
T KOG3010|consen 5 FDKQAADYLNARPSYP----TDWFKKIASRTEG--HRLAWDVGTGNGQAARGIAEHY-------------------KEVI 59 (261)
T ss_pred ccccHHHHhhcCCCCc----HHHHHHHHhhCCC--cceEEEeccCCCcchHHHHHhh-------------------hhhe
Confidence 3444555655444333 2344444443322 1279999999998888888776 6899
Q ss_pred EEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCc-EEEE
Q 036563 129 VCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGG-RFLC 205 (288)
Q Consensus 129 ~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG-~l~i 205 (288)
++|+|+.|++.+++.....-.. ........+...+.-.+++.|+|++.-++|++ |.+++.+++.|+||++| .+.+
T Consensus 60 atD~s~~mL~~a~k~~~~~y~~-t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF-dle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 60 ATDVSEAMLKVAKKHPPVTYCH-TPSTMSSDEMVDLLGGEESVDLITAAQAVHWF-DLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred eecCCHHHHHHhhcCCCccccc-CCccccccccccccCCCcceeeehhhhhHHhh-chHHHHHHHHHHcCCCCCEEEE
Confidence 9999999999998874322111 11222223333333347899999999999887 67889999999999877 4444
No 116
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.30 E-value=2.3e-10 Score=99.35 Aligned_cols=101 Identities=18% Similarity=0.221 Sum_probs=77.3
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+.+|||+|||+|.++..++... +..+++++|+|+.+++.++++....+ .++..+|+.+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~-----------------~~~~v~~vDis~~al~~A~~N~~~~~-----~~~~~~D~~~ 144 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAAL-----------------DGIELHAADIDPAAVRCARRNLADAG-----GTVHEGDLYD 144 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhC-----------------CCCEEEEEECCHHHHHHHHHHHHHcC-----CEEEEeechh
Confidence 4589999999999999998876 35789999999999999999987642 4778888765
Q ss_pred C-C-CCCCCeeEEEecccccccc----------------------C----HHHHHHHHHhhccCCcEEEEE
Q 036563 164 L-C-FEDSTMDGYTIAFGIRNVT----------------------H----IEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 164 ~-~-~~~~~~D~v~~~~~l~~~~----------------------~----~~~~l~~~~~~L~pgG~l~i~ 206 (288)
. + ...++||+|+++....... + ...+++.+.++|+|||.+++.
T Consensus 145 ~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 145 ALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred hcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3 1 1135799999987532110 0 246788888999999999863
No 117
>PHA03411 putative methyltransferase; Provisional
Probab=99.29 E-value=6.5e-11 Score=102.50 Aligned_cols=126 Identities=16% Similarity=0.235 Sum_probs=93.3
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.+..+|||+|||+|.++..++... +..+++++|+++.|++.++++. +++.++.+|+
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~-----------------~~~~V~gVDisp~al~~Ar~n~-------~~v~~v~~D~ 118 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRC-----------------KPEKIVCVELNPEFARIGKRLL-------PEAEWITSDV 118 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhC-----------------CCCEEEEEECCHHHHHHHHHhC-------cCCEEEECch
Confidence 345699999999999998887764 2479999999999999998763 4688999999
Q ss_pred ccCCCCCCCeeEEEeccccccccC--------------------HHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHH
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTH--------------------IEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYD 221 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~--------------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~ 221 (288)
..... ..+||+|+++..+.+.+. ..+.+.....+|+|+|.+.++-.+.|
T Consensus 119 ~e~~~-~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~---------- 187 (279)
T PHA03411 119 FEFES-NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP---------- 187 (279)
T ss_pred hhhcc-cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc----------
Confidence 87643 457999999998876531 13456677788888887765421111
Q ss_pred HhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCc
Q 036563 222 YYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQ 268 (288)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 268 (288)
.| ..-.+.++++++|+++||.
T Consensus 188 -------------------~y-------~~sl~~~~y~~~l~~~g~~ 208 (279)
T PHA03411 188 -------------------YY-------DGTMKSNKYLKWSKQTGLV 208 (279)
T ss_pred -------------------cc-------cccCCHHHHHHHHHhcCcE
Confidence 00 1133788999999999996
No 118
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.29 E-value=9.9e-12 Score=103.06 Aligned_cols=154 Identities=14% Similarity=0.231 Sum_probs=116.3
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL 164 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~ 164 (288)
..++||||+-|....++..+. ..+++-+|.|..|++.++..-. .. -.+....+|-+.+
T Consensus 74 p~a~diGcs~G~v~rhl~~e~------------------vekli~~DtS~~M~~s~~~~qd-p~---i~~~~~v~DEE~L 131 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRGEG------------------VEKLIMMDTSYDMIKSCRDAQD-PS---IETSYFVGDEEFL 131 (325)
T ss_pred cceeecccchhhhhHHHHhcc------------------hhheeeeecchHHHHHhhccCC-Cc---eEEEEEecchhcc
Confidence 479999999999999998873 4789999999999998875422 11 2467788998889
Q ss_pred CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhh
Q 036563 165 CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQY 244 (288)
Q Consensus 165 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (288)
++.++++|+|+.+..+|+.+|....+.+|+..|||+|.|+.. .....++.++...+....+.+.|.+-.
T Consensus 132 df~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~Fias---mlggdTLyELR~slqLAelER~GGiSp-------- 200 (325)
T KOG2940|consen 132 DFKENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIAS---MLGGDTLYELRCSLQLAELEREGGISP-------- 200 (325)
T ss_pred cccccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhH---HhccccHHHHHHHhhHHHHHhccCCCC--------
Confidence 999999999999999999999999999999999999999842 333344445544444344444444322
Q ss_pred hHHHHhcCCChHHHHHHHHHcCCcEEEEEE
Q 036563 245 LVESVRRFPPQEKFAAMISDAGFQKVEYEN 274 (288)
Q Consensus 245 ~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 274 (288)
++..|....++-.+|..|||..+.+..
T Consensus 201 ---hiSPf~qvrDiG~LL~rAGF~m~tvDt 227 (325)
T KOG2940|consen 201 ---HISPFTQVRDIGNLLTRAGFSMLTVDT 227 (325)
T ss_pred ---CcChhhhhhhhhhHHhhcCcccceecc
Confidence 122344567888999999999877643
No 119
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.28 E-value=8.4e-11 Score=109.72 Aligned_cols=121 Identities=19% Similarity=0.295 Sum_probs=96.0
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..+...+...++.+|||+|||+|..+.++++..+ +.++++++|+++.+++.+++++...++.
T Consensus 227 ~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~----------------~~g~V~a~Dis~~rl~~~~~n~~r~g~~-- 288 (431)
T PRK14903 227 QIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMK----------------DQGKILAVDISREKIQLVEKHAKRLKLS-- 288 (431)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcC----------------CCCEEEEEECCHHHHHHHHHHHHHcCCC--
Confidence 3445566778889999999999999999998864 4579999999999999999999988874
Q ss_pred ceEEEEcccccCC-CCCCCeeEEEeccccccc------cC----------------HHHHHHHHHhhccCCcEEEEEecc
Q 036563 153 SLLWVEGDAEALC-FEDSTMDGYTIAFGIRNV------TH----------------IEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 153 ~v~~~~~d~~~~~-~~~~~~D~v~~~~~l~~~------~~----------------~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
++.+...|+..++ +..++||.|++....... ++ ..++|.++.+.|+|||.++...++
T Consensus 289 ~v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 289 SIEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred eEEEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 6899999987764 345689999985433211 11 145699999999999999987776
Q ss_pred CC
Q 036563 210 HV 211 (288)
Q Consensus 210 ~~ 211 (288)
..
T Consensus 369 ~~ 370 (431)
T PRK14903 369 VT 370 (431)
T ss_pred CC
Confidence 54
No 120
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.27 E-value=1.8e-10 Score=108.21 Aligned_cols=119 Identities=18% Similarity=0.221 Sum_probs=93.1
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..+...+...++.+|||+|||+|..+..+++..+ +.++++++|+++.+++.+++++...++.
T Consensus 240 ~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~----------------~~~~v~avDi~~~~l~~~~~n~~~~g~~-- 301 (444)
T PRK14902 240 MLVAPALDPKGGDTVLDACAAPGGKTTHIAELLK----------------NTGKVVALDIHEHKLKLIEENAKRLGLT-- 301 (444)
T ss_pred HHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhC----------------CCCEEEEEeCCHHHHHHHHHHHHHcCCC--
Confidence 3455566777788999999999999999998863 3579999999999999999999888875
Q ss_pred ceEEEEcccccCC--CCCCCeeEEEeccccccc------cC----------------HHHHHHHHHhhccCCcEEEEEec
Q 036563 153 SLLWVEGDAEALC--FEDSTMDGYTIAFGIRNV------TH----------------IEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 153 ~v~~~~~d~~~~~--~~~~~~D~v~~~~~l~~~------~~----------------~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
++.++.+|+.... ++ ++||+|++....... ++ ...+|.++.++|+|||.++....
T Consensus 302 ~v~~~~~D~~~~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 302 NIETKALDARKVHEKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred eEEEEeCCcccccchhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 5999999987653 23 679999986532111 11 13579999999999999997655
Q ss_pred cC
Q 036563 209 SH 210 (288)
Q Consensus 209 ~~ 210 (288)
+.
T Consensus 381 s~ 382 (444)
T PRK14902 381 TI 382 (444)
T ss_pred CC
Confidence 54
No 121
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.27 E-value=2.1e-11 Score=103.87 Aligned_cols=94 Identities=21% Similarity=0.272 Sum_probs=76.0
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
...++||||+|.|..+..++..+ .++++.|.|+.|....+++ | ...+ +..
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f-------------------~~v~aTE~S~~Mr~rL~~k----g-----~~vl--~~~ 143 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF-------------------KEVYATEASPPMRWRLSKK----G-----FTVL--DID 143 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc-------------------ceEEeecCCHHHHHHHHhC----C-----CeEE--ehh
Confidence 45689999999999999998887 6899999999997766543 2 3333 222
Q ss_pred cCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 163 ALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 163 ~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+..-.+.+||+|.|.+++....+|..+|+.+++.|+|+|.+++.
T Consensus 144 ~w~~~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 144 DWQQTDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred hhhccCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 23323457999999999999999999999999999999999863
No 122
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.27 E-value=7.3e-11 Score=110.25 Aligned_cols=122 Identities=19% Similarity=0.223 Sum_probs=94.5
Q ss_pred HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 72 ~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
...+...+.+.++.+|||+|||+|..+..+++.. +.++++++|+++.+++.+++++...++.
T Consensus 227 s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~-----------------~~~~v~a~D~~~~~l~~~~~n~~r~g~~- 288 (426)
T TIGR00563 227 AQWVATWLAPQNEETILDACAAPGGKTTHILELA-----------------PQAQVVALDIHEHRLKRVYENLKRLGLT- 288 (426)
T ss_pred HHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHc-----------------CCCeEEEEeCCHHHHHHHHHHHHHcCCC-
Confidence 3556667788888999999999999999999876 3479999999999999999999888764
Q ss_pred CceEEEEcccccCCC--CCCCeeEEEecc------ccccccC----------------HHHHHHHHHhhccCCcEEEEEe
Q 036563 152 KSLLWVEGDAEALCF--EDSTMDGYTIAF------GIRNVTH----------------IEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~--~~~~~D~v~~~~------~l~~~~~----------------~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
..+.+..+|....+. ...+||.|++.. +++..++ ...+|.++.++|||||.++..+
T Consensus 289 ~~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst 368 (426)
T TIGR00563 289 IKAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT 368 (426)
T ss_pred eEEEEeccccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 334446677654432 456799999742 3443333 2468999999999999999887
Q ss_pred ccCC
Q 036563 208 LSHV 211 (288)
Q Consensus 208 ~~~~ 211 (288)
++..
T Consensus 369 cs~~ 372 (426)
T TIGR00563 369 CSVL 372 (426)
T ss_pred CCCC
Confidence 7764
No 123
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.27 E-value=6.2e-11 Score=106.07 Aligned_cols=110 Identities=22% Similarity=0.310 Sum_probs=87.0
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..+.+.+...++.+|||+|||+|.++..+++..+ ....++++|+++.+++.+++++...+. .
T Consensus 70 a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~----------------~~g~VvgVDis~~~l~~Ar~~l~~~g~--~ 131 (322)
T PRK13943 70 ALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVG----------------EKGLVVSVEYSRKICEIAKRNVRRLGI--E 131 (322)
T ss_pred HHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcC----------------CCCEEEEEECCHHHHHHHHHHHHHcCC--C
Confidence 4556666777788999999999999999988763 235799999999999999999887776 4
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
++.++.+|+........+||+|++...+.++ ...+.+.|+|||.+++.
T Consensus 132 nV~~i~gD~~~~~~~~~~fD~Ii~~~g~~~i------p~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 132 NVIFVCGDGYYGVPEFAPYDVIFVTVGVDEV------PETWFTQLKEGGRVIVP 179 (322)
T ss_pred cEEEEeCChhhcccccCCccEEEECCchHHh------HHHHHHhcCCCCEEEEE
Confidence 7899999987654444679999987655433 33467889999998874
No 124
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.27 E-value=7.4e-11 Score=103.32 Aligned_cols=118 Identities=17% Similarity=0.148 Sum_probs=93.0
Q ss_pred HhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 76 VSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 76 ~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
...+...++.+|||+|||+|..+..+++..+ +.+.++++|+++.+++.+++++...++. ++.
T Consensus 64 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~----------------~~g~v~a~D~~~~~l~~~~~n~~~~g~~--~v~ 125 (264)
T TIGR00446 64 PLALEPDPPERVLDMAAAPGGKTTQISALMK----------------NEGAIVANEFSKSRTKVLIANINRCGVL--NVA 125 (264)
T ss_pred HHHhCCCCcCEEEEECCCchHHHHHHHHHcC----------------CCCEEEEEcCCHHHHHHHHHHHHHcCCC--cEE
Confidence 3456677888999999999999999988864 3468999999999999999999888774 689
Q ss_pred EEEcccccCCCCCCCeeEEEeccccccc------cC----------------HHHHHHHHHhhccCCcEEEEEeccCC
Q 036563 156 WVEGDAEALCFEDSTMDGYTIAFGIRNV------TH----------------IEKALAEAYRVLKRGGRFLCLELSHV 211 (288)
Q Consensus 156 ~~~~d~~~~~~~~~~~D~v~~~~~l~~~------~~----------------~~~~l~~~~~~L~pgG~l~i~~~~~~ 211 (288)
+...|+..++...+.||.|++....... ++ ...+|+++.++|||||+++....+..
T Consensus 126 ~~~~D~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 126 VTNFDGRVFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred EecCCHHHhhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 9999987765445569999985432211 11 13489999999999999998766553
No 125
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1e-10 Score=97.06 Aligned_cols=109 Identities=21% Similarity=0.271 Sum_probs=91.9
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..|.+.+...++.+|||||||+|..+..+++.. .+|+.+|..+...+.|++++...++.
T Consensus 62 A~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~-------------------~~V~siEr~~~L~~~A~~~L~~lg~~-- 120 (209)
T COG2518 62 ARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV-------------------GRVVSIERIEELAEQARRNLETLGYE-- 120 (209)
T ss_pred HHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh-------------------CeEEEEEEcHHHHHHHHHHHHHcCCC--
Confidence 457788889999999999999999999999886 69999999999999999999999985
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
|+.+.++|...-..+..+||.|++......++ +. +.+-|++||++++..-
T Consensus 121 nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~vP--~~----Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 121 NVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVP--EA----LLDQLKPGGRLVIPVG 170 (209)
T ss_pred ceEEEECCcccCCCCCCCcCEEEEeeccCCCC--HH----HHHhcccCCEEEEEEc
Confidence 69999999876544557899999988766553 22 5677899999997543
No 126
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.26 E-value=2.2e-10 Score=107.53 Aligned_cols=119 Identities=22% Similarity=0.262 Sum_probs=93.2
Q ss_pred HHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 74 RLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 74 ~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
.....+...++.+|||+|||+|..+..+++..+ +..+++++|+++.+++.+++++...++. +
T Consensus 241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~----------------~~~~V~avD~s~~~l~~~~~~~~~~g~~--~ 302 (445)
T PRK14904 241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQ----------------NRGQITAVDRYPQKLEKIRSHASALGIT--I 302 (445)
T ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhC----------------CCcEEEEEECCHHHHHHHHHHHHHhCCC--e
Confidence 344566667788999999999999999888763 3479999999999999999999888774 7
Q ss_pred eEEEEcccccCCCCCCCeeEEEeccc------ccccc------C----------HHHHHHHHHhhccCCcEEEEEeccCC
Q 036563 154 LLWVEGDAEALCFEDSTMDGYTIAFG------IRNVT------H----------IEKALAEAYRVLKRGGRFLCLELSHV 211 (288)
Q Consensus 154 v~~~~~d~~~~~~~~~~~D~v~~~~~------l~~~~------~----------~~~~l~~~~~~L~pgG~l~i~~~~~~ 211 (288)
+.+..+|+..+. ++++||.|++... +..-+ + ...+|.++.+.|+|||.++...++..
T Consensus 303 v~~~~~Da~~~~-~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 303 IETIEGDARSFS-PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred EEEEeCcccccc-cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 899999987764 4567999997422 11111 1 13589999999999999998877664
No 127
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.25 E-value=1.1e-10 Score=85.74 Aligned_cols=101 Identities=29% Similarity=0.375 Sum_probs=82.7
Q ss_pred eEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCC
Q 036563 86 KHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC 165 (288)
Q Consensus 86 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~ 165 (288)
+|+|+|||+|..+..+++. ...+++++|+++.++..+++....... .++.+...|+.+..
T Consensus 1 ~ildig~G~G~~~~~~~~~------------------~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 60 (107)
T cd02440 1 RVLDLGCGTGALALALASG------------------PGARVTGVDISPVALELARKAAAALLA--DNVEVLKGDAEELP 60 (107)
T ss_pred CeEEEcCCccHHHHHHhcC------------------CCCEEEEEeCCHHHHHHHHHHHhcccc--cceEEEEcChhhhc
Confidence 5899999999999888872 358999999999999988753332222 57888999987765
Q ss_pred C-CCCCeeEEEecccccc-ccCHHHHHHHHHhhccCCcEEEEE
Q 036563 166 F-EDSTMDGYTIAFGIRN-VTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 166 ~-~~~~~D~v~~~~~l~~-~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
. ...++|+|+++..+++ ......+++.+.+.|+|+|.+++.
T Consensus 61 ~~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 61 PEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred cccCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 3 4568999999999988 667888999999999999999864
No 128
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.23 E-value=4.5e-10 Score=93.40 Aligned_cols=99 Identities=22% Similarity=0.251 Sum_probs=73.9
Q ss_pred CCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEc
Q 036563 80 NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEG 159 (288)
Q Consensus 80 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~ 159 (288)
...++.+|||+|||+|.++..+++... +..+++++|+++.+ .. +++.++.+
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~----------------~~~~v~~vDis~~~-----------~~--~~i~~~~~ 79 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVG----------------GKGRVIAVDLQPMK-----------PI--ENVDFIRG 79 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhC----------------CCceEEEEeccccc-----------cC--CCceEEEe
Confidence 346688999999999999999988763 34689999999864 11 46788888
Q ss_pred ccccCC--------CCCCCeeEEEecccccc-----cc------CHHHHHHHHHhhccCCcEEEEEe
Q 036563 160 DAEALC--------FEDSTMDGYTIAFGIRN-----VT------HIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 160 d~~~~~--------~~~~~~D~v~~~~~l~~-----~~------~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
|+.+.. .+.++||+|+++.+.+. .. +...++..+.+.|+|||++++..
T Consensus 80 d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 80 DFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred eCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 876532 34567999998654211 11 13678999999999999999743
No 129
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.23 E-value=4.9e-10 Score=92.90 Aligned_cols=170 Identities=20% Similarity=0.167 Sum_probs=114.9
Q ss_pred HHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 74 RLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 74 ~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
.+.+.++. .+.+|||||||||.-+.++++.+ |.....-.|+++..+...+......+++ +-
T Consensus 17 vL~~~l~~-~~~~vLEiaSGtGqHa~~FA~~l-----------------P~l~WqPSD~~~~~~~sI~a~~~~~~~~-Nv 77 (204)
T PF06080_consen 17 VLKQYLPD-SGTRVLEIASGTGQHAVYFAQAL-----------------PHLTWQPSDPDDNLRPSIRAWIAEAGLP-NV 77 (204)
T ss_pred HHHHHhCc-cCceEEEEcCCccHHHHHHHHHC-----------------CCCEEcCCCCChHHHhhHHHHHHhcCCc-cc
Confidence 34444443 22269999999999999999998 5788899999998877777776666654 22
Q ss_pred eEEEEcccccCCC--------CCCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEeccCCCh---HHHHHHH
Q 036563 154 LLWVEGDAEALCF--------EDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLELSHVDI---PVFKELY 220 (288)
Q Consensus 154 v~~~~~d~~~~~~--------~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~---~~~~~~~ 220 (288)
...+..|+...+. ..+.||.|++.+++|-.+ ..+.+++.+.++|++||.|++-..-..+. +.-...+
T Consensus 78 ~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~F 157 (204)
T PF06080_consen 78 RPPLALDVSAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAF 157 (204)
T ss_pred CCCeEeecCCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHH
Confidence 2345566655422 245899999999998665 45779999999999999999743322111 1112223
Q ss_pred HHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeE
Q 036563 221 DYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVA 281 (288)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~ 281 (288)
+...+..-|..| ..+.+++.++.+++|++.++.....-+...
T Consensus 158 D~sLr~rdp~~G-------------------iRD~e~v~~lA~~~GL~l~~~~~MPANN~~ 199 (204)
T PF06080_consen 158 DASLRSRDPEWG-------------------IRDIEDVEALAAAHGLELEEDIDMPANNLL 199 (204)
T ss_pred HHHHhcCCCCcC-------------------ccCHHHHHHHHHHCCCccCcccccCCCCeE
Confidence 332222212211 347889999999999998887776554333
No 130
>PRK04457 spermidine synthase; Provisional
Probab=99.20 E-value=3e-10 Score=99.25 Aligned_cols=109 Identities=16% Similarity=0.146 Sum_probs=83.9
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||||||+|.++..+++.. +..+++++|+++++++.+++.+...+.. ++++++.+|+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~-----------------p~~~v~~VEidp~vi~~A~~~f~~~~~~-~rv~v~~~Da 126 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYL-----------------PDTRQTAVEINPQVIAVARNHFELPENG-ERFEVIEADG 126 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhC-----------------CCCeEEEEECCHHHHHHHHHHcCCCCCC-CceEEEECCH
Confidence 345789999999999999998886 5689999999999999999887543322 6899999998
Q ss_pred ccC-CCCCCCeeEEEecccc-cccc---CHHHHHHHHHhhccCCcEEEEEec
Q 036563 162 EAL-CFEDSTMDGYTIAFGI-RNVT---HIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 162 ~~~-~~~~~~~D~v~~~~~l-~~~~---~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.+. ....++||+|++...- ...+ ....+++++.+.|+|||.+++.-+
T Consensus 127 ~~~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 127 AEYIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 654 2223579999986421 1111 136899999999999999997533
No 131
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.19 E-value=1.3e-10 Score=104.45 Aligned_cols=173 Identities=20% Similarity=0.257 Sum_probs=100.5
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC--------CCce
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP--------DKSL 154 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~--------~~~v 154 (288)
++.+|||+|||-|..+.-+... ....++|+|++...++.|+++.....-. .-..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~------------------~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a 123 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA------------------KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIA 123 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT------------------T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEE
T ss_pred CCCeEEEecCCCchhHHHHHhc------------------CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchh
Confidence 6789999999988766666555 2489999999999999999998321100 0235
Q ss_pred EEEEcccccC----CCCC--CCeeEEEecccccccc----CHHHHHHHHHhhccCCcEEEEEeccCCChHHHH-HHHHHh
Q 036563 155 LWVEGDAEAL----CFED--STMDGYTIAFGIRNVT----HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFK-ELYDYY 223 (288)
Q Consensus 155 ~~~~~d~~~~----~~~~--~~~D~v~~~~~l~~~~----~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~-~~~~~~ 223 (288)
.++.+|.... .+++ ..||+|-|.+++|+.= ....+|+++...|+|||+|+.. .|+...+. .+....
T Consensus 124 ~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT---~~d~~~i~~~l~~~~ 200 (331)
T PF03291_consen 124 EFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT---TPDSDEIVKRLREKK 200 (331)
T ss_dssp EEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE---EE-HHHHHCCHHC-E
T ss_pred heeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE---ecCHHHHHHHHHhhc
Confidence 6677776543 1333 4899999999999763 2456899999999999999953 34444331 122100
Q ss_pred hcccccccccc-----ccCC------CcchhhhHH-HH----hcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 224 SFSVIPAIGEL-----VAGD------RGSYQYLVE-SV----RRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 224 ~~~~~~~~~~~-----~~~~------~~~~~~~~~-~~----~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
.....+.++.- +..+ ...|.+..+ .+ ..+...+.+.+++++.|++.+...++.
T Consensus 201 ~~~~~~~~gN~~y~I~f~~~~~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~eyGLeLV~~~~F~ 269 (331)
T PF03291_consen 201 SNSEKKKFGNSVYSIEFDSDDFFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAKEYGLELVEKKNFH 269 (331)
T ss_dssp EECCCSCSETSSEEEEESCCSS--CTTEEEEEEETTCSSCEEEE---HHHHHHHHHHTTEEEEEEEEHH
T ss_pred ccccccccCCccEEEEecccCCCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHHHcCCEEEEeCChH
Confidence 00000001000 0000 112222111 11 124568899999999999999877653
No 132
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.18 E-value=2.5e-10 Score=94.30 Aligned_cols=129 Identities=22% Similarity=0.241 Sum_probs=90.0
Q ss_pred hHhhHHHhhhhhhhhhhhhHHHHHHHHhhcCCCC--CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceE
Q 036563 50 SSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFP--GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRI 127 (288)
Q Consensus 50 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v 127 (288)
+..+..|+.-.+... ++........+.+..+. ..-|||||||+|..+..+.+. +..+
T Consensus 17 d~eA~kYt~nsri~~--IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~-------------------Gh~w 75 (270)
T KOG1541|consen 17 DTEAPKYTQNSRIVL--IQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS-------------------GHQW 75 (270)
T ss_pred hhhhhhccccceeee--ehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC-------------------CceE
Confidence 445666765433322 23333344445554433 567999999999998777664 4889
Q ss_pred EEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc-cCCCCCCCeeEEEecccccccc-------CH----HHHHHHHHh
Q 036563 128 YVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE-ALCFEDSTMDGYTIAFGIRNVT-------HI----EKALAEAYR 195 (288)
Q Consensus 128 ~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~D~v~~~~~l~~~~-------~~----~~~l~~~~~ 195 (288)
+|+|+|+.|++.|.++-.+ -.++.+|+- .+||..++||.+|+..+++++= ++ ..++..++.
T Consensus 76 iGvDiSpsML~~a~~~e~e-------gdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~ 148 (270)
T KOG1541|consen 76 IGVDISPSMLEQAVERELE-------GDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYS 148 (270)
T ss_pred EeecCCHHHHHHHHHhhhh-------cCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhh
Confidence 9999999999999874322 246777764 4689999999999877765441 22 346778999
Q ss_pred hccCCcEEEEE
Q 036563 196 VLKRGGRFLCL 206 (288)
Q Consensus 196 ~L~pgG~l~i~ 206 (288)
.|++|+..++.
T Consensus 149 ~l~rg~raV~Q 159 (270)
T KOG1541|consen 149 CLKRGARAVLQ 159 (270)
T ss_pred hhccCceeEEE
Confidence 99999999863
No 133
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.18 E-value=2.8e-10 Score=97.88 Aligned_cols=104 Identities=16% Similarity=0.158 Sum_probs=85.3
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||+|||+|..+..++...+ +.++++++|+++++++.+++++...++. .+++++.+|+
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~----------------~~g~v~tiD~d~~~~~~A~~n~~~~gl~-~~i~~~~gda 129 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALP----------------EDGRITAIDIDKEAYEVGLEFIKKAGVD-HKINFIQSDA 129 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCC----------------CCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEccH
Confidence 3467999999999999999888764 4689999999999999999999999887 7899999998
Q ss_pred ccC-C-----CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 162 EAL-C-----FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 162 ~~~-~-----~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
.+. + .+.++||+|++...- +.....+..+.++|+|||.+++
T Consensus 130 ~~~L~~l~~~~~~~~fD~VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 130 LSALDQLLNNDPKPEFDFAFVDADK---PNYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred HHHHHHHHhCCCCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCeEEEE
Confidence 653 1 124589999975431 2346788999999999998875
No 134
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.17 E-value=5.1e-10 Score=91.46 Aligned_cols=107 Identities=17% Similarity=0.217 Sum_probs=81.8
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+++.+...++.+|||+|||+|.++..+++.. .+++++|+++.+++.++++.... +
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~-------------------~~v~~vE~~~~~~~~~~~~~~~~----~ 59 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLERA-------------------ARVTAIEIDPRLAPRLREKFAAA----D 59 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhcC-------------------CeEEEEECCHHHHHHHHHHhccC----C
Confidence 345667777777899999999999999998873 78999999999999999887542 5
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhh--ccCCcEEEE
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRV--LKRGGRFLC 205 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~--L~pgG~l~i 205 (288)
+++++.+|+.+.++++..+|.|+++..++.. ...+..+.+. +.++|.+++
T Consensus 60 ~v~ii~~D~~~~~~~~~~~d~vi~n~Py~~~---~~~i~~~l~~~~~~~~~~l~~ 111 (169)
T smart00650 60 NLTVIHGDALKFDLPKLQPYKVVGNLPYNIS---TPILFKLLEEPPAFRDAVLMV 111 (169)
T ss_pred CEEEEECchhcCCccccCCCEEEECCCcccH---HHHHHHHHhcCCCcceEEEEE
Confidence 8999999999887776679999988766532 2334444332 346777764
No 135
>PLN02476 O-methyltransferase
Probab=99.16 E-value=1.3e-09 Score=95.19 Aligned_cols=105 Identities=16% Similarity=0.157 Sum_probs=86.6
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcc
Q 036563 81 PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGD 160 (288)
Q Consensus 81 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d 160 (288)
..++.+|||||+++|..+..++...+ +.++++.+|.+++..+.|++.+...++. ++++++.+|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~----------------~~G~V~TiE~d~e~~~~Ar~n~~~aGl~-~~I~li~Gd 178 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLP----------------ESGCLVACERDSNSLEVAKRYYELAGVS-HKVNVKHGL 178 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCC----------------CCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcC
Confidence 34467999999999999999998764 4578999999999999999999999987 789999999
Q ss_pred cccC-C-C----CCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 161 AEAL-C-F----EDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 161 ~~~~-~-~----~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
+.+. + + ..++||+|++...= .+....++.+.++|+|||.+++
T Consensus 179 A~e~L~~l~~~~~~~~FD~VFIDa~K---~~Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 179 AAESLKSMIQNGEGSSYDFAFVDADK---RMYQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred HHHHHHHHHhcccCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCcEEEE
Confidence 8653 2 1 13579999976541 2457788999999999999885
No 136
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.16 E-value=8.9e-10 Score=95.89 Aligned_cols=173 Identities=18% Similarity=0.167 Sum_probs=112.0
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC----ceEEE
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK----SLLWV 157 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~----~v~~~ 157 (288)
+++..++|+|||-|.-++.+-+.. ...++++||+...+++|+++.....-... .+.|+
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAg------------------I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~ 177 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAG------------------IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFI 177 (389)
T ss_pred ccccccceeccCCcccHhHhhhhc------------------ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEE
Confidence 456789999999988776665542 37899999999999999998764422101 36788
Q ss_pred EcccccC------CCCCCCeeEEEeccccccc-c---CHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHh-hcc
Q 036563 158 EGDAEAL------CFEDSTMDGYTIAFGIRNV-T---HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYY-SFS 226 (288)
Q Consensus 158 ~~d~~~~------~~~~~~~D~v~~~~~l~~~-~---~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~-~~~ 226 (288)
.+|.... ++.+.+||+|-|.+++|+. . ....+|.++.+.|+|||+++ -+.|+......-.... ...
T Consensus 178 ~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FI---gTiPdsd~Ii~rlr~~e~~~ 254 (389)
T KOG1975|consen 178 AADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFI---GTIPDSDVIIKRLRAGEVER 254 (389)
T ss_pred EeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEE---EecCcHHHHHHHHHhccchh
Confidence 8886542 3345559999999999865 2 34568999999999999998 5566665543322221 000
Q ss_pred cc------------ccccccccCCCcchhh-hHHHH---hcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 227 VI------------PAIGELVAGDRGSYQY-LVESV---RRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 227 ~~------------~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
.. +.-+..... ...|++ +.+.+ ..+...+.+..+.++-|++.+...++.
T Consensus 255 ~gNdiykv~y~~~~~k~~~~p~f-G~kY~F~LedaVdcPEylV~F~~l~~lae~y~LeLv~~k~F~ 319 (389)
T KOG1975|consen 255 FGNDIYKVTYEIEFQKEFDVPPF-GAKYRFHLEDAVDCPEYLVPFPTLVSLAEEYGLELVFVKPFA 319 (389)
T ss_pred hcceeeeEeeeeecccccCCCCc-cceEEEEcccccCCcceeeehHHHHHHHHhcCcEEEEeccHH
Confidence 00 111111111 122332 22222 223456788999999999998877653
No 137
>PRK00811 spermidine synthase; Provisional
Probab=99.15 E-value=3.9e-10 Score=99.69 Aligned_cols=108 Identities=19% Similarity=0.233 Sum_probs=83.4
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC---CCCCceEEEE
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG---YPDKSLLWVE 158 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~---~~~~~v~~~~ 158 (288)
+.+.+||+||||+|..+..++++. ...+++++|+++.+++.+++.+...+ ..+++++++.
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~-----------------~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~ 137 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHP-----------------SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVI 137 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCC-----------------CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEE
Confidence 345799999999999999998763 24789999999999999999876432 1247899999
Q ss_pred cccccC-CCCCCCeeEEEeccccccccC----HHHHHHHHHhhccCCcEEEEE
Q 036563 159 GDAEAL-CFEDSTMDGYTIAFGIRNVTH----IEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 159 ~d~~~~-~~~~~~~D~v~~~~~l~~~~~----~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+|+... ....++||+|++...-...+. ...+++.+++.|+|||.+++.
T Consensus 138 ~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 138 GDGIKFVAETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred CchHHHHhhCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 998764 234568999998654322221 256789999999999998863
No 138
>PRK01581 speE spermidine synthase; Validated
Probab=99.15 E-value=1.7e-09 Score=97.20 Aligned_cols=108 Identities=19% Similarity=0.262 Sum_probs=80.5
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHH--hh---hcCCCCCceEE
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKR--AL---ERGYPDKSLLW 156 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~--~~---~~~~~~~~v~~ 156 (288)
..+.+||++|||+|..+..+++.. +..+++++|+++++++.|++. +. ...+.++++++
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~-----------------~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~v 211 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYE-----------------TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNV 211 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcC-----------------CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEE
Confidence 345699999999999888888763 357999999999999999962 11 12233479999
Q ss_pred EEcccccC-CCCCCCeeEEEecccccc---ccC--HHHHHHHHHhhccCCcEEEEE
Q 036563 157 VEGDAEAL-CFEDSTMDGYTIAFGIRN---VTH--IEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 157 ~~~d~~~~-~~~~~~~D~v~~~~~l~~---~~~--~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+.+|+... ....++||+|++...-.. ... ...+++.+++.|+|||.+++.
T Consensus 212 vi~Da~~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 212 HVCDAKEFLSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred EECcHHHHHHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99998764 334568999998753111 111 256899999999999999864
No 139
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.14 E-value=1.8e-09 Score=91.24 Aligned_cols=134 Identities=19% Similarity=0.299 Sum_probs=101.8
Q ss_pred HHHHhhcCCC-CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 73 DRLVSKLNPF-PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 73 ~~~~~~l~~~-~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
+.+++.+... ....|-|+|||.+.++. . ....|+.+|+-+
T Consensus 169 d~ii~~ik~r~~~~vIaD~GCGEakiA~----~------------------~~~kV~SfDL~a----------------- 209 (325)
T KOG3045|consen 169 DVIIRKIKRRPKNIVIADFGCGEAKIAS----S------------------ERHKVHSFDLVA----------------- 209 (325)
T ss_pred HHHHHHHHhCcCceEEEecccchhhhhh----c------------------cccceeeeeeec-----------------
Confidence 3455555433 34578899999998875 1 236789999744
Q ss_pred CceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccc
Q 036563 152 KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAI 231 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (288)
.+-+++.+|+.+.|+++++.|++++..+|.. .+...++.+++|+|++||.+.|.|...
T Consensus 210 ~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~IAEv~S--------------------- 267 (325)
T KOG3045|consen 210 VNERVIACDMRNVPLEDESVDVAVFCLSLMG-TNLADFIKEANRILKPGGLLYIAEVKS--------------------- 267 (325)
T ss_pred CCCceeeccccCCcCccCcccEEEeeHhhhc-ccHHHHHHHHHHHhccCceEEEEehhh---------------------
Confidence 3567888999999999999999998887765 478999999999999999999977532
Q ss_pred cccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEeee
Q 036563 232 GELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLK 287 (288)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~k 287 (288)
+|.+...+...|...||.+... ......+..+...|
T Consensus 268 -------------------Rf~dv~~f~r~l~~lGF~~~~~-d~~n~~F~lfefkK 303 (325)
T KOG3045|consen 268 -------------------RFSDVKGFVRALTKLGFDVKHK-DVSNKYFTLFEFKK 303 (325)
T ss_pred -------------------hcccHHHHHHHHHHcCCeeeeh-hhhcceEEEEEEec
Confidence 2447778999999999986554 44566666666555
No 140
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.11 E-value=2.2e-09 Score=90.16 Aligned_cols=113 Identities=19% Similarity=0.254 Sum_probs=89.4
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC
Q 036563 70 LWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY 149 (288)
Q Consensus 70 ~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~ 149 (288)
.+...++.... ..+||||||++|..+..+++..+ ++++++.+|+++...+.|++.+...++
T Consensus 35 ~lL~~l~~~~~---~k~vLEIGt~~GySal~la~~l~----------------~~g~i~tiE~~~~~~~~A~~~~~~ag~ 95 (205)
T PF01596_consen 35 QLLQMLVRLTR---PKRVLEIGTFTGYSALWLAEALP----------------EDGKITTIEIDPERAEIARENFRKAGL 95 (205)
T ss_dssp HHHHHHHHHHT----SEEEEESTTTSHHHHHHHHTST----------------TTSEEEEEESSHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHhcC---CceEEEeccccccHHHHHHHhhc----------------ccceEEEecCcHHHHHHHHHHHHhcCC
Confidence 33344444443 46999999999999999999874 568999999999999999999998888
Q ss_pred CCCceEEEEcccccC-C-----CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 150 PDKSLLWVEGDAEAL-C-----FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 150 ~~~~v~~~~~d~~~~-~-----~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
. .+++++.+|+.+. + ...++||+|++...- .+....+..+.++|+|||.+++
T Consensus 96 ~-~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K---~~y~~y~~~~~~ll~~ggvii~ 153 (205)
T PF01596_consen 96 D-DRIEVIEGDALEVLPELANDGEEGQFDFVFIDADK---RNYLEYFEKALPLLRPGGVIIA 153 (205)
T ss_dssp G-GGEEEEES-HHHHHHHHHHTTTTTSEEEEEEESTG---GGHHHHHHHHHHHEEEEEEEEE
T ss_pred C-CcEEEEEeccHhhHHHHHhccCCCceeEEEEcccc---cchhhHHHHHhhhccCCeEEEE
Confidence 6 7899999998653 1 123579999986642 3457788889999999999985
No 141
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.11 E-value=8.1e-10 Score=93.75 Aligned_cols=146 Identities=20% Similarity=0.195 Sum_probs=99.9
Q ss_pred hcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh-cC--------
Q 036563 78 KLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE-RG-------- 148 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~-~~-------- 148 (288)
.+...++.+||..|||.|.....+++. +.+|+|+|+|+.+++.+.+.... ..
T Consensus 32 ~l~~~~~~rvLvPgCG~g~D~~~La~~-------------------G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~ 92 (218)
T PF05724_consen 32 SLALKPGGRVLVPGCGKGYDMLWLAEQ-------------------GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFK 92 (218)
T ss_dssp HHTTSTSEEEEETTTTTSCHHHHHHHT-------------------TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEE
T ss_pred hcCCCCCCeEEEeCCCChHHHHHHHHC-------------------CCeEEEEecCHHHHHHHHHHhccCCCccccccee
Confidence 355667789999999999999999987 38999999999999988443221 10
Q ss_pred -CCCCceEEEEcccccCCCCC-CCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhh
Q 036563 149 -YPDKSLLWVEGDAEALCFED-STMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYS 224 (288)
Q Consensus 149 -~~~~~v~~~~~d~~~~~~~~-~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~ 224 (288)
....++.+.++|+..++... ++||+|+=..++..++ ...+..+.+.++|+|||.++++.+..+...
T Consensus 93 ~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~---------- 162 (218)
T PF05724_consen 93 RYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGE---------- 162 (218)
T ss_dssp EETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSC----------
T ss_pred eecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcC----------
Confidence 11246789999998875333 4799999888877775 457789999999999999554433322110
Q ss_pred ccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEE
Q 036563 225 FSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYEN 274 (288)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 274 (288)
. .+++ | -.+.+++++++. .+|++...+.
T Consensus 163 ---------~-~GPP--f---------~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 163 ---------M-EGPP--F---------SVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp ---------S-SSSS---------------HHHHHHHHT-TTEEEEEEEE
T ss_pred ---------C-CCcC--C---------CCCHHHHHHHhc-CCcEEEEEec
Confidence 0 0011 1 126788888888 8888877664
No 142
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.11 E-value=1.8e-09 Score=101.46 Aligned_cols=112 Identities=13% Similarity=0.165 Sum_probs=86.0
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
+.+.+.+.+.+...++.+|||+|||+|.++..+++.. .+++++|+|+.|++.++++....+
T Consensus 283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-------------------~~V~gvD~s~~al~~A~~n~~~~~ 343 (443)
T PRK13168 283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-------------------AEVVGVEGVEAMVERARENARRNG 343 (443)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-------------------CEEEEEeCCHHHHHHHHHHHHHcC
Confidence 3444566667776777899999999999999988774 789999999999999999988777
Q ss_pred CCCCceEEEEcccccC----CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 149 YPDKSLLWVEGDAEAL----CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
+. ++.+..+|+.+. ++.+++||+|+++..-.. ....++.+.+ ++|++.+++
T Consensus 344 ~~--~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g---~~~~~~~l~~-~~~~~ivyv 398 (443)
T PRK13168 344 LD--NVTFYHANLEEDFTDQPWALGGFDKVLLDPPRAG---AAEVMQALAK-LGPKRIVYV 398 (443)
T ss_pred CC--ceEEEEeChHHhhhhhhhhcCCCCEEEECcCCcC---hHHHHHHHHh-cCCCeEEEE
Confidence 64 799999998653 234567999998766433 3345555555 688887775
No 143
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.10 E-value=3.3e-09 Score=97.78 Aligned_cols=110 Identities=15% Similarity=0.096 Sum_probs=83.5
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.+|||+|||+|.++..++.. ...+++++|+|+.+++.+++++..+++...+++++.+|+.
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~------------------ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~ 281 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG------------------GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVF 281 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC------------------CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHH
Confidence 4679999999999998776543 2358999999999999999999888774237899999987
Q ss_pred cCC----CCCCCeeEEEecccccccc---------CHHHHHHHHHhhccCCcEEEEEeccC
Q 036563 163 ALC----FEDSTMDGYTIAFGIRNVT---------HIEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 163 ~~~----~~~~~~D~v~~~~~l~~~~---------~~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
+.- ...++||+|+++...-... +...++..+.++|+|||.+++..+++
T Consensus 282 ~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~ 342 (396)
T PRK15128 282 KLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSG 342 (396)
T ss_pred HHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 641 1245799999986632111 23445667889999999999766554
No 144
>PRK03612 spermidine synthase; Provisional
Probab=99.08 E-value=3.2e-09 Score=101.50 Aligned_cols=108 Identities=15% Similarity=0.118 Sum_probs=81.6
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHH--hhhc---CCCCCceEE
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKR--ALER---GYPDKSLLW 156 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~--~~~~---~~~~~~v~~ 156 (288)
+++.+|||+|||+|..+..++++- +..+++++|+++++++.++++ +... ...++++++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~-----------------~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~v 358 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYP-----------------DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTV 358 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-----------------CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEE
Confidence 346799999999999999888752 237999999999999999983 2221 233468999
Q ss_pred EEcccccC-CCCCCCeeEEEeccccccccC-----HHHHHHHHHhhccCCcEEEEE
Q 036563 157 VEGDAEAL-CFEDSTMDGYTIAFGIRNVTH-----IEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 157 ~~~d~~~~-~~~~~~~D~v~~~~~l~~~~~-----~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+.+|+.+. ...+++||+|+++......+. ...+++.+++.|+|||.+++.
T Consensus 359 i~~Da~~~l~~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~ 414 (521)
T PRK03612 359 VNDDAFNWLRKLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ 414 (521)
T ss_pred EEChHHHHHHhCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEe
Confidence 99998764 223468999999865333221 245889999999999999864
No 145
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.08 E-value=1.9e-09 Score=106.56 Aligned_cols=106 Identities=15% Similarity=0.128 Sum_probs=83.3
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.+|||+|||+|.++..++... ..+|+++|+|+.+++.+++++..+++...+++++.+|+.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G------------------a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~ 599 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG------------------AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCL 599 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC------------------CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHH
Confidence 36799999999999999998863 257999999999999999999888774347999999986
Q ss_pred cCC-CCCCCeeEEEecccccc-----------ccCHHHHHHHHHhhccCCcEEEEE
Q 036563 163 ALC-FEDSTMDGYTIAFGIRN-----------VTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 163 ~~~-~~~~~~D~v~~~~~l~~-----------~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+.. ...++||+|+++..... ..+...++..+.++|+|||.+++.
T Consensus 600 ~~l~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 600 AWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFS 655 (702)
T ss_pred HHHHHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 531 12457999999764211 123456788899999999998864
No 146
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.08 E-value=6.7e-10 Score=92.56 Aligned_cols=153 Identities=25% Similarity=0.345 Sum_probs=110.1
Q ss_pred hhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEE
Q 036563 77 SKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLW 156 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~ 156 (288)
+......+.+|||.|.|-|.+++..++.. ..+|+.++.+++.++.|.-+-=..++.+.++.+
T Consensus 128 ~~V~~~~G~rVLDtC~GLGYtAi~a~~rG------------------A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~i 189 (287)
T COG2521 128 ELVKVKRGERVLDTCTGLGYTAIEALERG------------------AIHVITVEKDPNVLELAKLNPWSRELFEIAIKI 189 (287)
T ss_pred heeccccCCEeeeeccCccHHHHHHHHcC------------------CcEEEEEeeCCCeEEeeccCCCCccccccccEE
Confidence 34455678999999999999999999884 249999999999999887664444444457899
Q ss_pred EEcccccC--CCCCCCeeEEEeccc-cccccC--HHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccc
Q 036563 157 VEGDAEAL--CFEDSTMDGYTIAFG-IRNVTH--IEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAI 231 (288)
Q Consensus 157 ~~~d~~~~--~~~~~~~D~v~~~~~-l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (288)
+.+|+.+. .+.+++||.|+-... +.+..+ .+.+.++++|+|+|||.++--. ..|
T Consensus 190 ilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv-G~P-------------------- 248 (287)
T COG2521 190 ILGDAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV-GNP-------------------- 248 (287)
T ss_pred ecccHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe-CCC--------------------
Confidence 99998775 588899999985332 111111 2678999999999999997311 111
Q ss_pred cccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEE
Q 036563 232 GELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAI 282 (288)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~ 282 (288)
...| +...-+..+...|+++||.+++......|+++.
T Consensus 249 -------g~ry-------rG~d~~~gVa~RLr~vGF~~v~~~~~~~gv~A~ 285 (287)
T COG2521 249 -------GKRY-------RGLDLPKGVAERLRRVGFEVVKKVREALGVVAV 285 (287)
T ss_pred -------Cccc-------ccCChhHHHHHHHHhcCceeeeeehhccceEEe
Confidence 0011 112235788899999999999988877777653
No 147
>PLN02672 methionine S-methyltransferase
Probab=99.05 E-value=5.3e-09 Score=105.90 Aligned_cols=109 Identities=18% Similarity=0.265 Sum_probs=81.1
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC-------------
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP------------- 150 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~------------- 150 (288)
+.+|||+|||+|.++..+++.. +..+++++|+|+.+++.|+++...+++.
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~-----------------~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~ 181 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKW-----------------LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKT 181 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHC-----------------CCCEEEEEECCHHHHHHHHHHHHHcCccccccccccccccc
Confidence 4589999999999999999986 4579999999999999999998765321
Q ss_pred -CCceEEEEcccccCCCC-CCCeeEEEeccccc--------------cc--------------------cC----HHHHH
Q 036563 151 -DKSLLWVEGDAEALCFE-DSTMDGYTIAFGIR--------------NV--------------------TH----IEKAL 190 (288)
Q Consensus 151 -~~~v~~~~~d~~~~~~~-~~~~D~v~~~~~l~--------------~~--------------------~~----~~~~l 190 (288)
..++.++.+|+.+.... ..+||+|++|...- +. .| ..+++
T Consensus 182 l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~ 261 (1082)
T PLN02672 182 LLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAV 261 (1082)
T ss_pred ccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHH
Confidence 13689999998654311 13699999976521 00 00 15577
Q ss_pred HHHHhhccCCcEEEEEeccC
Q 036563 191 AEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 191 ~~~~~~L~pgG~l~i~~~~~ 210 (288)
.++.++|+|||.++ .|...
T Consensus 262 ~~a~~~L~pgG~l~-lEiG~ 280 (1082)
T PLN02672 262 EEGISVIKPMGIMI-FNMGG 280 (1082)
T ss_pred HHHHHhccCCCEEE-EEECc
Confidence 88888999999887 44433
No 148
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.05 E-value=7.8e-09 Score=86.34 Aligned_cols=104 Identities=22% Similarity=0.298 Sum_probs=82.7
Q ss_pred eEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC-
Q 036563 86 KHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL- 164 (288)
Q Consensus 86 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~- 164 (288)
.+||||||.|.++..++... |+..++|+|+....+..+.+++...++ .|+.++++|+..+
T Consensus 20 l~lEIG~G~G~~l~~~A~~~-----------------Pd~n~iGiE~~~~~v~~a~~~~~~~~l--~Nv~~~~~da~~~l 80 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRN-----------------PDINFIGIEIRKKRVAKALRKAEKRGL--KNVRFLRGDARELL 80 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHS-----------------TTSEEEEEES-HHHHHHHHHHHHHHTT--SSEEEEES-CTTHH
T ss_pred eEEEecCCCCHHHHHHHHHC-----------------CCCCEEEEecchHHHHHHHHHHHhhcc--cceEEEEccHHHHH
Confidence 89999999999999999998 689999999999999999999888887 4999999998773
Q ss_pred --CCCCCCeeEEEeccccccccC--------HHHHHHHHHhhccCCcEEEEEec
Q 036563 165 --CFEDSTMDGYTIAFGIRNVTH--------IEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 165 --~~~~~~~D~v~~~~~l~~~~~--------~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
-++++++|.|++++.--+... -..++..+.++|+|||.+.+.+.
T Consensus 81 ~~~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 81 RRLFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp HHHSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred hhcccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 245678999998776433321 16689999999999999987653
No 149
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.05 E-value=2.6e-09 Score=89.94 Aligned_cols=106 Identities=16% Similarity=0.219 Sum_probs=87.5
Q ss_pred CCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEE-
Q 036563 80 NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVE- 158 (288)
Q Consensus 80 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~- 158 (288)
....+++|||||.+.|..+.+++...+ .+++++.+|+++++.+.|++++...++. +++..+.
T Consensus 56 ~~~~~k~iLEiGT~~GySal~mA~~l~----------------~~g~l~tiE~~~e~~~~A~~n~~~ag~~-~~i~~~~~ 118 (219)
T COG4122 56 RLSGPKRILEIGTAIGYSALWMALALP----------------DDGRLTTIERDEERAEIARENLAEAGVD-DRIELLLG 118 (219)
T ss_pred HhcCCceEEEeecccCHHHHHHHhhCC----------------CCCeEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEEec
Confidence 334568999999999999999999984 3689999999999999999999999998 6688888
Q ss_pred cccccC-C-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 159 GDAEAL-C-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 159 ~d~~~~-~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
+|..+. . ...++||+|++...= .+...+++.+.++|+|||.+++
T Consensus 119 gdal~~l~~~~~~~fDliFIDadK---~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 119 GDALDVLSRLLDGSFDLVFIDADK---ADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred CcHHHHHHhccCCCccEEEEeCCh---hhCHHHHHHHHHHhCCCcEEEE
Confidence 476443 2 356789999975432 2457889999999999999986
No 150
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=99.04 E-value=3.6e-08 Score=88.05 Aligned_cols=125 Identities=13% Similarity=0.091 Sum_probs=86.2
Q ss_pred hhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh
Q 036563 67 LHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE 146 (288)
Q Consensus 67 ~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 146 (288)
+.+.....+++.++ ++..|+|+|||+|.-+..+++.+.... ....|+++|+|.++++.+..++..
T Consensus 62 iL~~~~~~Ia~~i~--~~~~lIELGsG~~~Kt~~LL~aL~~~~-------------~~~~Y~plDIS~~~L~~a~~~L~~ 126 (319)
T TIGR03439 62 ILKKHSSDIAASIP--SGSMLVELGSGNLRKVGILLEALERQK-------------KSVDYYALDVSRSELQRTLAELPL 126 (319)
T ss_pred HHHHHHHHHHHhcC--CCCEEEEECCCchHHHHHHHHHHHhcC-------------CCceEEEEECCHHHHHHHHHhhhh
Confidence 34455566777665 356899999999999888888763100 236799999999999999999873
Q ss_pred cCCCCCceEEEEcccccC----CC--CCCCeeEEEe-ccccccccC--HHHHHHHHHh-hccCCcEEEEE
Q 036563 147 RGYPDKSLLWVEGDAEAL----CF--EDSTMDGYTI-AFGIRNVTH--IEKALAEAYR-VLKRGGRFLCL 206 (288)
Q Consensus 147 ~~~~~~~v~~~~~d~~~~----~~--~~~~~D~v~~-~~~l~~~~~--~~~~l~~~~~-~L~pgG~l~i~ 206 (288)
..++.-.+.-+.+|..+. +- ......+++. ..++.+++. ...+|+++++ .|+|||.+++.
T Consensus 127 ~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 127 GNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred ccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 334312334477877553 11 1223455554 447777764 4578999999 99999999874
No 151
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.04 E-value=5.8e-09 Score=88.61 Aligned_cols=112 Identities=11% Similarity=-0.061 Sum_probs=86.8
Q ss_pred cCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc----------C
Q 036563 79 LNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER----------G 148 (288)
Q Consensus 79 l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~----------~ 148 (288)
+...++.+||+.|||.|..+..+++. +..|+|+|+|+..++.+.+..... .
T Consensus 39 l~~~~~~rvLvPgCGkg~D~~~LA~~-------------------G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~ 99 (226)
T PRK13256 39 LNINDSSVCLIPMCGCSIDMLFFLSK-------------------GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKL 99 (226)
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHhC-------------------CCcEEEEecCHHHHHHHHHHcCCCcceecccccce
Confidence 34445679999999999999999987 378999999999999876531100 0
Q ss_pred CCCCceEEEEcccccCCCC---CCCeeEEEeccccccccC--HHHHHHHHHhhccCCcEEEEEecc
Q 036563 149 YPDKSLLWVEGDAEALCFE---DSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~~~---~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
....++.+.++|+.+++.. .+.||+|+-..++.+++. ..+..+.+.++|+|||.++++.+.
T Consensus 100 ~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 100 YKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred eccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 1114789999999887532 257999999888888863 467899999999999999986553
No 152
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.02 E-value=5.2e-09 Score=91.97 Aligned_cols=107 Identities=17% Similarity=0.169 Sum_probs=80.8
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC--CCCCceEEEEcc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG--YPDKSLLWVEGD 160 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~v~~~~~d 160 (288)
.+.+||+||||+|..+..+++.. +..+++++|+++++++.+++.+...+ ...+++++..+|
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-----------------~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D 134 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-----------------SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDD 134 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-----------------CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECc
Confidence 34599999999999998888764 24789999999999999998775432 223578888888
Q ss_pred cccC-CCCCCCeeEEEecccccccc--C--HHHHHHHHHhhccCCcEEEEE
Q 036563 161 AEAL-CFEDSTMDGYTIAFGIRNVT--H--IEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 161 ~~~~-~~~~~~~D~v~~~~~l~~~~--~--~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+... ....++||+|++.......+ + ...+++.+++.|+|||.+++.
T Consensus 135 ~~~~l~~~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 135 GFKFLADTENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred hHHHHHhCCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 7553 22246899999876532211 2 357889999999999999975
No 153
>PLN02366 spermidine synthase
Probab=99.01 E-value=4.2e-09 Score=93.85 Aligned_cols=108 Identities=22% Similarity=0.245 Sum_probs=83.0
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc--CCCCCceEEEEc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER--GYPDKSLLWVEG 159 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~v~~~~~ 159 (288)
+++.+||+||||.|..+..++++- +..+++.+|+++.+++.+++.+... ++.+++++++.+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~-----------------~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~ 152 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHS-----------------SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIG 152 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-----------------CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEC
Confidence 346799999999999999988763 3478999999999999999987643 234579999999
Q ss_pred ccccCC--CCCCCeeEEEeccccccccC----HHHHHHHHHhhccCCcEEEEE
Q 036563 160 DAEALC--FEDSTMDGYTIAFGIRNVTH----IEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 160 d~~~~~--~~~~~~D~v~~~~~l~~~~~----~~~~l~~~~~~L~pgG~l~i~ 206 (288)
|+...- .++++||+|++...-...+. ...+++.+++.|+|||.+++.
T Consensus 153 Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 153 DGVEFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred hHHHHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 976541 23567999998654322221 246899999999999999763
No 154
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.00 E-value=1.6e-08 Score=90.25 Aligned_cols=83 Identities=16% Similarity=0.119 Sum_probs=64.4
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc-CCCCCceEEEE-cc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER-GYPDKSLLWVE-GD 160 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~v~~~~-~d 160 (288)
++.++||||||+|.+...++... ++.+++++|+++.+++.|++++... ++. .++.+.. .|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-----------------~~~~~~atDId~~Al~~A~~Nv~~Np~l~-~~I~~~~~~~ 175 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-----------------YGWRFVGSDIDPQALASAQAIISANPGLN-GAIRLRLQKD 175 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-----------------CCCEEEEEeCCHHHHHHHHHHHHhccCCc-CcEEEEEccc
Confidence 45799999999998887777665 3589999999999999999999888 566 5777754 33
Q ss_pred cccC----CCCCCCeeEEEeccccccc
Q 036563 161 AEAL----CFEDSTMDGYTIAFGIRNV 183 (288)
Q Consensus 161 ~~~~----~~~~~~~D~v~~~~~l~~~ 183 (288)
...+ ..+.+.||+|+|+..++.-
T Consensus 176 ~~~i~~~i~~~~~~fDlivcNPPf~~s 202 (321)
T PRK11727 176 SKAIFKGIIHKNERFDATLCNPPFHAS 202 (321)
T ss_pred hhhhhhcccccCCceEEEEeCCCCcCc
Confidence 3222 1245689999999987754
No 155
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.97 E-value=5e-09 Score=92.69 Aligned_cols=116 Identities=16% Similarity=0.272 Sum_probs=90.2
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
+.++..+.+.-...+++.|||+|||||.++...++.. ..+++++|.|. +.+.+.+.+..++
T Consensus 46 ~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAG------------------A~~V~aVe~S~-ia~~a~~iv~~N~ 106 (346)
T KOG1499|consen 46 LAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAG------------------ARKVYAVEASS-IADFARKIVKDNG 106 (346)
T ss_pred HHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhC------------------cceEEEEechH-HHHHHHHHHHhcC
Confidence 3444555555556678899999999999999999985 38999999755 5599999999988
Q ss_pred CCCCceEEEEcccccCCCCCCCeeEEEeccc---cccccCHHHHHHHHHhhccCCcEEE
Q 036563 149 YPDKSLLWVEGDAEALCFEDSTMDGYTIAFG---IRNVTHIEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~---l~~~~~~~~~l~~~~~~L~pgG~l~ 204 (288)
+. ..++++.+.++++.+|.++.|+|++-+. +-+-.-...+|-.--+.|+|||.++
T Consensus 107 ~~-~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 107 LE-DVITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred cc-ceEEEeecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 87 6789999999988777789999998553 2222234556666778999999876
No 156
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=5.9e-08 Score=78.09 Aligned_cols=133 Identities=15% Similarity=0.169 Sum_probs=99.1
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
..-++|||||+|..+..+++..+ ++..+.++|++|.+++...+.+..++. ++..++.|+.+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~----------------~~~~~latDiNp~A~~~Tl~TA~~n~~---~~~~V~tdl~~ 104 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIG----------------PQALYLATDINPEALEATLETARCNRV---HIDVVRTDLLS 104 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcC----------------CCceEEEecCCHHHHHHHHHHHHhcCC---ccceeehhHHh
Confidence 46799999999999999999875 678899999999999988888776653 57888888765
Q ss_pred CCCCCCCeeEEEecccccccc-----------------C----HHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHH
Q 036563 164 LCFEDSTMDGYTIAFGIRNVT-----------------H----IEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDY 222 (288)
Q Consensus 164 ~~~~~~~~D~v~~~~~l~~~~-----------------~----~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~ 222 (288)
.- ..++.|+++.+...--.+ + .++++..+-.+|.|.|+++++....
T Consensus 105 ~l-~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~------------ 171 (209)
T KOG3191|consen 105 GL-RNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA------------ 171 (209)
T ss_pred hh-ccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh------------
Confidence 43 237899988876532111 0 2456777888899999999753211
Q ss_pred hhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCC
Q 036563 223 YSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGG 278 (288)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~ 278 (288)
..++++.+.++.-||.......-..|
T Consensus 172 ------------------------------N~p~ei~k~l~~~g~~~~~~~~Rk~~ 197 (209)
T KOG3191|consen 172 ------------------------------NKPKEILKILEKKGYGVRIAMQRKAG 197 (209)
T ss_pred ------------------------------cCHHHHHHHHhhcccceeEEEEEecC
Confidence 14678888999999987666544444
No 157
>PHA03412 putative methyltransferase; Provisional
Probab=98.95 E-value=5.2e-09 Score=88.79 Aligned_cols=97 Identities=18% Similarity=0.309 Sum_probs=73.8
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+.+|||+|||+|.++..+++.... ++..+++++|+++.+++.++++. +++.+...|+..
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~--------------~~~~~V~aVEID~~Al~~Ar~n~-------~~~~~~~~D~~~ 108 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMY--------------AKPREIVCVELNHTYYKLGKRIV-------PEATWINADALT 108 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhccc--------------CCCcEEEEEECCHHHHHHHHhhc-------cCCEEEEcchhc
Confidence 579999999999999998886410 02368999999999999999764 357899999876
Q ss_pred CCCCCCCeeEEEecccccccc--C----------HHHHHHHHHhhccCCcE
Q 036563 164 LCFEDSTMDGYTIAFGIRNVT--H----------IEKALAEAYRVLKRGGR 202 (288)
Q Consensus 164 ~~~~~~~~D~v~~~~~l~~~~--~----------~~~~l~~~~~~L~pgG~ 202 (288)
..+ +++||+|++|..+.-.. + ...++..+.+++++|+.
T Consensus 109 ~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 109 TEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 554 45899999998865321 1 24578888886666665
No 158
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.95 E-value=1.6e-08 Score=84.68 Aligned_cols=104 Identities=11% Similarity=0.054 Sum_probs=77.1
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||+|||+|.++..++... ..+++++|.++.+++.+++++...+.. ++.++.+|+
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~------------------a~~V~~vE~~~~a~~~a~~Nl~~~~~~--~v~~~~~D~ 111 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRY------------------AAGATLLEMDRAVAQQLIKNLATLKAG--NARVVNTNA 111 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcC------------------CCEEEEEECCHHHHHHHHHHHHHhCCC--cEEEEEchH
Confidence 346799999999999998765553 268999999999999999998887763 799999998
Q ss_pred ccC-CCCCCCeeEEEeccccccccCHHHHHHHHHh--hccCCcEEEEE
Q 036563 162 EAL-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYR--VLKRGGRFLCL 206 (288)
Q Consensus 162 ~~~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~--~L~pgG~l~i~ 206 (288)
... +....+||+|+++..+.. .-...+++.+.. +|+|++.+++.
T Consensus 112 ~~~l~~~~~~fDlV~~DPPy~~-g~~~~~l~~l~~~~~l~~~~iv~ve 158 (199)
T PRK10909 112 LSFLAQPGTPHNVVFVDPPFRK-GLLEETINLLEDNGWLADEALIYVE 158 (199)
T ss_pred HHHHhhcCCCceEEEECCCCCC-ChHHHHHHHHHHCCCcCCCcEEEEE
Confidence 653 222346999999888532 123345555544 47888877753
No 159
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.95 E-value=3e-08 Score=81.72 Aligned_cols=129 Identities=22% Similarity=0.236 Sum_probs=86.0
Q ss_pred hhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh
Q 036563 67 LHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE 146 (288)
Q Consensus 67 ~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 146 (288)
........|+......++..+||.-||+|.+....+........ .. +. ....++|.|+++.+++.+++++..
T Consensus 12 L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~-~~------~~-~~~~~~g~Di~~~~v~~a~~N~~~ 83 (179)
T PF01170_consen 12 LRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPP-LN------DI-NELKIIGSDIDPKAVRGARENLKA 83 (179)
T ss_dssp S-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTST-TT------H--CH--EEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCccc-cc------cc-ccccEEecCCCHHHHHHHHHHHHh
Confidence 33455566777777778889999999999999888776531000 00 00 012489999999999999999998
Q ss_pred cCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccC----H----HHHHHHHHhhccCCcEEE
Q 036563 147 RGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTH----I----EKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 147 ~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~----~----~~~l~~~~~~L~pgG~l~ 204 (288)
.++. ..+.+.+.|+..+++.++++|.|+++.....-.. . ..+++++.++|++...++
T Consensus 84 ag~~-~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l 148 (179)
T PF01170_consen 84 AGVE-DYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFL 148 (179)
T ss_dssp TT-C-GGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEE
T ss_pred cccC-CceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 8876 6789999999999877789999999887653211 1 346788889999844444
No 160
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.94 E-value=2.3e-08 Score=89.81 Aligned_cols=107 Identities=14% Similarity=0.141 Sum_probs=77.7
Q ss_pred HHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 75 LVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 75 ~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
+.+.+...++.+|||+|||+|.++..++.. ..+++++|+++.+++.++++....++ .++
T Consensus 165 v~~~l~~~~~~~VLDl~cG~G~~sl~la~~-------------------~~~V~gvD~s~~av~~A~~n~~~~~l--~~v 223 (315)
T PRK03522 165 ARDWVRELPPRSMWDLFCGVGGFGLHCATP-------------------GMQLTGIEISAEAIACAKQSAAELGL--TNV 223 (315)
T ss_pred HHHHHHhcCCCEEEEccCCCCHHHHHHHhc-------------------CCEEEEEeCCHHHHHHHHHHHHHcCC--Cce
Confidence 334444345679999999999999999885 37999999999999999999988876 479
Q ss_pred EEEEcccccCCC-CCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 155 LWVEGDAEALCF-EDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 155 ~~~~~d~~~~~~-~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
+++.+|+.++.. ..+.||+|+++..-.. ....+.++...++|++.+++
T Consensus 224 ~~~~~D~~~~~~~~~~~~D~Vv~dPPr~G---~~~~~~~~l~~~~~~~ivyv 272 (315)
T PRK03522 224 QFQALDSTQFATAQGEVPDLVLVNPPRRG---IGKELCDYLSQMAPRFILYS 272 (315)
T ss_pred EEEEcCHHHHHHhcCCCCeEEEECCCCCC---ccHHHHHHHHHcCCCeEEEE
Confidence 999999977532 2347999998865222 22223233344677766664
No 161
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.93 E-value=5.9e-08 Score=82.57 Aligned_cols=104 Identities=21% Similarity=0.186 Sum_probs=87.9
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL 164 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~ 164 (288)
..+||||||.|.+...+++.. |...+.|+|+....+..+.+++.+.+++ |+.+++.|+..+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n-----------------P~~nfiGiEi~~~~v~~~l~k~~~~~l~--Nlri~~~DA~~~ 110 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN-----------------PEKNFLGIEIRVPGVAKALKKIKELGLK--NLRLLCGDAVEV 110 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC-----------------CCCCEEEEEEehHHHHHHHHHHHHcCCC--cEEEEcCCHHHH
Confidence 479999999999999999998 6899999999999999999999998874 899999998775
Q ss_pred ---CCCCCCeeEEEeccccccccC--------HHHHHHHHHhhccCCcEEEEEe
Q 036563 165 ---CFEDSTMDGYTIAFGIRNVTH--------IEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 165 ---~~~~~~~D~v~~~~~l~~~~~--------~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
-+++++.|-|.+++.--+... -..+++.+.+.|+|||.|.+.+
T Consensus 111 l~~~~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 111 LDYLIPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred HHhcCCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 234559999998887444332 1568999999999999999754
No 162
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.93 E-value=2.9e-08 Score=93.05 Aligned_cols=109 Identities=14% Similarity=0.167 Sum_probs=82.1
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+.+.+...++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++...++ .
T Consensus 282 ~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~-------------------~~V~~vE~~~~av~~a~~n~~~~~~--~ 340 (431)
T TIGR00479 282 DRALEALELQGEELVVDAYCGVGTFTLPLAKQA-------------------KSVVGIEVVPESVEKAQQNAELNGI--A 340 (431)
T ss_pred HHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC-------------------CEEEEEEcCHHHHHHHHHHHHHhCC--C
Confidence 445556666667899999999999999988764 6899999999999999999888776 4
Q ss_pred ceEEEEcccccC----CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 153 SLLWVEGDAEAL----CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 153 ~v~~~~~d~~~~----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
+++++.+|+.+. ...+.+||+|++...-... ...+++.+.+ ++|++.+++
T Consensus 341 nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~G~--~~~~l~~l~~-l~~~~ivyv 394 (431)
T TIGR00479 341 NVEFLAGTLETVLPKQPWAGQIPDVLLLDPPRKGC--AAEVLRTIIE-LKPERIVYV 394 (431)
T ss_pred ceEEEeCCHHHHHHHHHhcCCCCCEEEECcCCCCC--CHHHHHHHHh-cCCCEEEEE
Confidence 899999998653 1234579999976652211 2455665554 788886664
No 163
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=4.4e-08 Score=79.59 Aligned_cols=81 Identities=21% Similarity=0.264 Sum_probs=66.7
Q ss_pred cCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEE
Q 036563 79 LNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVE 158 (288)
Q Consensus 79 l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~ 158 (288)
...-.+..|+|+|||||.++..++-.. -.+|+++|+++++++.++++..+.. .++.++.
T Consensus 41 ~g~l~g~~V~DlG~GTG~La~ga~~lG------------------a~~V~~vdiD~~a~ei~r~N~~~l~---g~v~f~~ 99 (198)
T COG2263 41 RGDLEGKTVLDLGAGTGILAIGAALLG------------------ASRVLAVDIDPEALEIARANAEELL---GDVEFVV 99 (198)
T ss_pred cCCcCCCEEEEcCCCcCHHHHHHHhcC------------------CcEEEEEecCHHHHHHHHHHHHhhC---CceEEEE
Confidence 344456689999999999998887774 3899999999999999999998743 5799999
Q ss_pred cccccCCCCCCCeeEEEeccccccc
Q 036563 159 GDAEALCFEDSTMDGYTIAFGIRNV 183 (288)
Q Consensus 159 ~d~~~~~~~~~~~D~v~~~~~l~~~ 183 (288)
.|+..+. ..+|.+++|..+...
T Consensus 100 ~dv~~~~---~~~dtvimNPPFG~~ 121 (198)
T COG2263 100 ADVSDFR---GKFDTVIMNPPFGSQ 121 (198)
T ss_pred cchhhcC---CccceEEECCCCccc
Confidence 9998764 468999998876543
No 164
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.90 E-value=2.3e-08 Score=81.96 Aligned_cols=110 Identities=19% Similarity=0.178 Sum_probs=74.0
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC-CCCCceEEEEc
Q 036563 81 PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG-YPDKSLLWVEG 159 (288)
Q Consensus 81 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~v~~~~~ 159 (288)
..++.+|||+|||+|..+..++... ...+|+..|.++ .++..+.++..++ ....++.+...
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~-----------------~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L 104 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLF-----------------GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPL 104 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT------------------T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE-
T ss_pred hcCCceEEEECCccchhHHHHHhcc-----------------CCceEEEeccch-hhHHHHHHHHhccccccccccCcEE
Confidence 3457899999999999999998884 248999999988 8888888887654 11256777777
Q ss_pred ccccC----CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 160 DAEAL----CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 160 d~~~~----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
|..+. .....+||+|+++.+++.......+++.+.++|+++|.+++...
T Consensus 105 ~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 105 DWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp -TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 65431 12345799999999999877788899999999999998776543
No 165
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.89 E-value=1e-08 Score=88.39 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=84.9
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
+..+|||||+++|..+.+++...+ +.++++.+|.+++..+.|++.+...++. ++++++.+|+.
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~----------------~~g~v~tiE~~~~~~~~Ar~~~~~ag~~-~~I~~~~G~a~ 141 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALP----------------EDGKILAMDINRENYELGLPVIQKAGVA-HKIDFREGPAL 141 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCC----------------CCCEEEEEeCCHHHHHHHHHHHHHCCCC-CceEEEeccHH
Confidence 356899999999999999998764 5689999999999999999999999987 89999999986
Q ss_pred cC-C-C-----CCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 163 AL-C-F-----EDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 163 ~~-~-~-----~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
+. + + ..++||+|++...= ......++.+.++|+|||.+++
T Consensus 142 e~L~~l~~~~~~~~~fD~iFiDadK---~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 142 PVLDQMIEDGKYHGTFDFIFVDADK---DNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred HHHHHHHhccccCCcccEEEecCCH---HHhHHHHHHHHHhcCCCeEEEE
Confidence 53 2 1 12589999976541 2346678888999999999875
No 166
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.88 E-value=8.5e-08 Score=84.07 Aligned_cols=112 Identities=15% Similarity=0.264 Sum_probs=85.2
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
+.+.+.+.-....+..|||+|||+|.++...++.. ..+|++++. .+|.+.|++....+++.
T Consensus 165 Y~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAG------------------A~~vYAvEA-S~MAqyA~~Lv~~N~~~ 225 (517)
T KOG1500|consen 165 YQRAILENHSDFQDKIVLDVGAGSGILSFFAAQAG------------------AKKVYAVEA-SEMAQYARKLVASNNLA 225 (517)
T ss_pred HHHHHHhcccccCCcEEEEecCCccHHHHHHHHhC------------------cceEEEEeh-hHHHHHHHHHHhcCCcc
Confidence 33556666556677889999999999999888874 389999996 56999999999888777
Q ss_pred CCceEEEEcccccCCCCCCCeeEEEeccccccc--c-CHHHHHHHHHhhccCCcEEE
Q 036563 151 DKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNV--T-HIEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 151 ~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~--~-~~~~~l~~~~~~L~pgG~l~ 204 (288)
.++.++.+.++++.+| ++.|++++-.. ..+ + ......-..++.|+|.|..+
T Consensus 226 -~rItVI~GKiEdieLP-Ek~DviISEPM-G~mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 226 -DRITVIPGKIEDIELP-EKVDVIISEPM-GYMLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred -ceEEEccCccccccCc-hhccEEEeccc-hhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence 8999999999988766 47999986432 111 1 12223335679999999876
No 167
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.87 E-value=2.8e-08 Score=88.41 Aligned_cols=120 Identities=24% Similarity=0.215 Sum_probs=98.2
Q ss_pred hhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhh
Q 036563 66 GLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRAL 145 (288)
Q Consensus 66 ~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~ 145 (288)
....+..+.++......+|..|||.=||||.++..+.-. +++++|.|++..|+.-++.++.
T Consensus 180 s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~-------------------G~~viG~Did~~mv~gak~Nl~ 240 (347)
T COG1041 180 SMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM-------------------GARVIGSDIDERMVRGAKINLE 240 (347)
T ss_pred CcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc-------------------CceEeecchHHHHHhhhhhhhh
Confidence 344567788888888899999999999999999877655 4899999999999999999999
Q ss_pred hcCCCCCceEEEEc-ccccCCCCCCCeeEEEecccccccc-----C----HHHHHHHHHhhccCCcEEEEE
Q 036563 146 ERGYPDKSLLWVEG-DAEALCFEDSTMDGYTIAFGIRNVT-----H----IEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 146 ~~~~~~~~v~~~~~-d~~~~~~~~~~~D~v~~~~~l~~~~-----~----~~~~l~~~~~~L~pgG~l~i~ 206 (288)
..++. ...+... |+.++++++.++|.|++.....-.. . ..++|+.+.++|++||++++.
T Consensus 241 ~y~i~--~~~~~~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~ 309 (347)
T COG1041 241 YYGIE--DYPVLKVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFA 309 (347)
T ss_pred hhCcC--ceeEEEecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence 88764 5555555 9999998888899999876643221 1 367899999999999999863
No 168
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.86 E-value=4.8e-08 Score=82.07 Aligned_cols=104 Identities=14% Similarity=0.180 Sum_probs=74.0
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC-----------
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD----------- 151 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~----------- 151 (288)
.+..+|||||.+|.++..+++.++ ...+.|+||++..++.|++.++-..-..
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~-----------------~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~ 120 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFG-----------------PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASF 120 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhc-----------------cceeeEeeccHHHHHHHHHhccccccccccccCCCcccc
Confidence 356899999999999999999985 4679999999999999998764321000
Q ss_pred ----------------------CceEE-------EEcccccCCCCCCCeeEEEeccccccc------cCHHHHHHHHHhh
Q 036563 152 ----------------------KSLLW-------VEGDAEALCFEDSTMDGYTIAFGIRNV------THIEKALAEAYRV 196 (288)
Q Consensus 152 ----------------------~~v~~-------~~~d~~~~~~~~~~~D~v~~~~~l~~~------~~~~~~l~~~~~~ 196 (288)
.++.+ ...|+. .+....||+|+|..+-.++ +....+++++.++
T Consensus 121 ~~~~~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~l 198 (288)
T KOG2899|consen 121 GVQFGPISQRNEADRAFTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSL 198 (288)
T ss_pred ccccccccccccccccccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHh
Confidence 01111 111111 1334579999997663222 2468899999999
Q ss_pred ccCCcEEEE
Q 036563 197 LKRGGRFLC 205 (288)
Q Consensus 197 L~pgG~l~i 205 (288)
|.|||.|++
T Consensus 199 l~pgGiLvv 207 (288)
T KOG2899|consen 199 LHPGGILVV 207 (288)
T ss_pred hCcCcEEEE
Confidence 999999985
No 169
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.85 E-value=2.2e-08 Score=87.49 Aligned_cols=90 Identities=14% Similarity=0.261 Sum_probs=74.5
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc
Q 036563 68 HRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER 147 (288)
Q Consensus 68 ~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 147 (288)
++.+.+.+++.+...++.+|||+|||+|.++..+++.. .+++++|+++.+++.++++....
T Consensus 14 d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~-------------------~~v~~vEid~~~~~~l~~~~~~~ 74 (258)
T PRK14896 14 DDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRA-------------------KKVYAIELDPRLAEFLRDDEIAA 74 (258)
T ss_pred CHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC-------------------CEEEEEECCHHHHHHHHHHhccC
Confidence 34556777788877778899999999999999999873 68999999999999999877542
Q ss_pred CCCCCceEEEEcccccCCCCCCCeeEEEecccccc
Q 036563 148 GYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRN 182 (288)
Q Consensus 148 ~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 182 (288)
+++.++.+|+.+++++ .+|.|+++...+.
T Consensus 75 ----~~v~ii~~D~~~~~~~--~~d~Vv~NlPy~i 103 (258)
T PRK14896 75 ----GNVEIIEGDALKVDLP--EFNKVVSNLPYQI 103 (258)
T ss_pred ----CCEEEEEeccccCCch--hceEEEEcCCccc
Confidence 5899999999887655 4899999877543
No 170
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.83 E-value=1.9e-07 Score=77.11 Aligned_cols=97 Identities=23% Similarity=0.240 Sum_probs=81.0
Q ss_pred eEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCC
Q 036563 86 KHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC 165 (288)
Q Consensus 86 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~ 165 (288)
+++|||+|.|..+..++-.. |..+++.+|.+..-....+......+++ |++++...+++ .
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-----------------p~~~~~LvEs~~KK~~FL~~~~~~L~L~--nv~v~~~R~E~-~ 110 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-----------------PDLQVTLVESVGKKVAFLKEVVRELGLS--NVEVINGRAEE-P 110 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH------------------TTSEEEEEESSHHHHHHHHHHHHHHT-S--SEEEEES-HHH-T
T ss_pred eEEecCCCCCChhHHHHHhC-----------------CCCcEEEEeCCchHHHHHHHHHHHhCCC--CEEEEEeeecc-c
Confidence 89999999999999998887 5789999999999988888888888884 89999999988 4
Q ss_pred CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 166 FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 166 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
.....||+|++..+ .....++.-+.+++++||.+++.
T Consensus 111 ~~~~~fd~v~aRAv----~~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 111 EYRESFDVVTARAV----APLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp TTTT-EEEEEEESS----SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred ccCCCccEEEeehh----cCHHHHHHHHHHhcCCCCEEEEE
Confidence 45568999998655 56788999999999999999863
No 171
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.82 E-value=4.3e-08 Score=86.92 Aligned_cols=152 Identities=16% Similarity=0.170 Sum_probs=102.0
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL 164 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~ 164 (288)
...+|+|.|.|..+..++..+ .++-+++++...+-.+..... . .+..+-+|+.+-
T Consensus 179 ~~avDvGgGiG~v~k~ll~~f-------------------p~ik~infdlp~v~~~a~~~~-~-----gV~~v~gdmfq~ 233 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKY-------------------PHIKGINFDLPFVLAAAPYLA-P-----GVEHVAGDMFQD 233 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhC-------------------CCCceeecCHHHHHhhhhhhc-C-----Ccceeccccccc
Confidence 579999999999999999965 457777777776665555442 2 377788887655
Q ss_pred CCCCCCeeEEEeccccccccC--HHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcch
Q 036563 165 CFEDSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSY 242 (288)
Q Consensus 165 ~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (288)
.|. -|+|++.+++||++| ..++|++|+..|+|+|.+++.|...|.............+.. ..+........
T Consensus 234 -~P~--~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~-d~lm~~~~~~G--- 306 (342)
T KOG3178|consen 234 -TPK--GDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDM-DLLMLTQTSGG--- 306 (342)
T ss_pred -CCC--cCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehh-HHHHHHHhccc---
Confidence 343 579999999999985 578999999999999999999997764221111000000000 00000000000
Q ss_pred hhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 243 QYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
.-.+.++++.++.++||.+..+.-..
T Consensus 307 --------kert~~e~q~l~~~~gF~~~~~~~~~ 332 (342)
T KOG3178|consen 307 --------KERTLKEFQALLPEEGFPVCMVALTA 332 (342)
T ss_pred --------eeccHHHHHhcchhhcCceeEEEecc
Confidence 01268999999999999988876543
No 172
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.81 E-value=1.2e-07 Score=81.03 Aligned_cols=120 Identities=15% Similarity=0.167 Sum_probs=87.4
Q ss_pred HHHHHHHHhhcCC---CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhh
Q 036563 69 RLWKDRLVSKLNP---FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRAL 145 (288)
Q Consensus 69 ~~~~~~~~~~l~~---~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~ 145 (288)
+.|-+.+++.+.. ..+..|||+|||+|.++..++... +.+.++++|.|+.++..|.+++.
T Consensus 131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L-----------------~~~~v~AiD~S~~Ai~La~eN~q 193 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGL-----------------PQCTVTAIDVSKAAIKLAKENAQ 193 (328)
T ss_pred HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcC-----------------CCceEEEEeccHHHHHHHHHHHH
Confidence 3444444444432 345589999999999999999988 57999999999999999999998
Q ss_pred hcCCCCCceEEEEcccccC-----CCCCCCeeEEEeccccccccCH--------------------------HHHHHHHH
Q 036563 146 ERGYPDKSLLWVEGDAEAL-----CFEDSTMDGYTIAFGIRNVTHI--------------------------EKALAEAY 194 (288)
Q Consensus 146 ~~~~~~~~v~~~~~d~~~~-----~~~~~~~D~v~~~~~l~~~~~~--------------------------~~~l~~~~ 194 (288)
...+. +++..+..+++.- +...+++|++++|...-.-+|. ..++.-+.
T Consensus 194 r~~l~-g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~ 272 (328)
T KOG2904|consen 194 RLKLS-GRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLAT 272 (328)
T ss_pred HHhhc-CceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhH
Confidence 88777 7787776554432 3456789999998763211111 22456677
Q ss_pred hhccCCcEEEEE
Q 036563 195 RVLKRGGRFLCL 206 (288)
Q Consensus 195 ~~L~pgG~l~i~ 206 (288)
|.|+|||.+.+-
T Consensus 273 R~Lq~gg~~~le 284 (328)
T KOG2904|consen 273 RMLQPGGFEQLE 284 (328)
T ss_pred hhcccCCeEEEE
Confidence 999999998864
No 173
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.81 E-value=8e-08 Score=89.84 Aligned_cols=106 Identities=21% Similarity=0.295 Sum_probs=76.4
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+..|+|+|||+|.++...++.....+ ...+|+++|-|+.+....++++...++. ++|+++.+|+++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~-------------~a~~VyAVEkn~~A~~~l~~~v~~n~w~-~~V~vi~~d~r~ 252 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAG-------------GAVKVYAVEKNPNAVVTLQKRVNANGWG-DKVTVIHGDMRE 252 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHC-------------CESEEEEEESSTHHHHHHHHHHHHTTTT-TTEEEEES-TTT
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhC-------------CCeEEEEEcCCHhHHHHHHHHHHhcCCC-CeEEEEeCcccC
Confidence 56799999999999988777642100 1369999999999888877776777776 789999999999
Q ss_pred CCCCCCCeeEEEeccc--cccccCHHHHHHHHHhhccCCcEEE
Q 036563 164 LCFEDSTMDGYTIAFG--IRNVTHIEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 164 ~~~~~~~~D~v~~~~~--l~~~~~~~~~l~~~~~~L~pgG~l~ 204 (288)
...+. ++|+|++=.. +-.-+-....|....+.|||||.++
T Consensus 253 v~lpe-kvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 253 VELPE-KVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp SCHSS--EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred CCCCC-ceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 87654 8999997222 2111234567888999999999876
No 174
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.81 E-value=2.1e-08 Score=83.59 Aligned_cols=116 Identities=17% Similarity=0.162 Sum_probs=70.3
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc---------------
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER--------------- 147 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--------------- 147 (288)
+..+|+..||+||.-.-.++-.+... .....+-..+++|+|+|+.+++.|++..-..
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~--------~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf 102 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLEL--------LPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYF 102 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHH--------H-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHE
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHH--------hcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhc
Confidence 56799999999997443333322110 0001112479999999999999998742100
Q ss_pred ------CCC-----CCceEEEEcccccCCCCCCCeeEEEeccccccccCH--HHHHHHHHhhccCCcEEEEE
Q 036563 148 ------GYP-----DKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHI--EKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 148 ------~~~-----~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~ 206 (288)
.+. ..+|.|...|+.+.+.+.+.||+|+|.+++-+++.. .++++.+++.|+|||+|++.
T Consensus 103 ~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 103 TERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp EEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred cccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 000 156888888887743445689999999999998753 67999999999999999963
No 175
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.80 E-value=9e-08 Score=76.04 Aligned_cols=117 Identities=17% Similarity=0.235 Sum_probs=96.5
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC
Q 036563 70 LWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY 149 (288)
Q Consensus 70 ~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~ 149 (288)
...+.|...+....+.-|||+|.|||-++..++.+.- +...++.++.|++......+..
T Consensus 35 ~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv----------------~~~~L~~iE~~~dF~~~L~~~~----- 93 (194)
T COG3963 35 ILARKMASVIDPESGLPVLELGPGTGVITKAILSRGV----------------RPESLTAIEYSPDFVCHLNQLY----- 93 (194)
T ss_pred HHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCC----------------CccceEEEEeCHHHHHHHHHhC-----
Confidence 3456777888888888999999999999999999853 5688999999999998887775
Q ss_pred CCCceEEEEcccccCC-----CCCCCeeEEEeccccccccC--HHHHHHHHHhhccCCcEEEEEecc
Q 036563 150 PDKSLLWVEGDAEALC-----FEDSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 150 ~~~~v~~~~~d~~~~~-----~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
+.+.++.+|+..+. ..+..||.|++...+..++- ..+.|+.+...|..||.++-...+
T Consensus 94 --p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 94 --PGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred --CCccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 46778999987763 45567999999998887763 356899999999999999976665
No 176
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=4.8e-07 Score=77.33 Aligned_cols=110 Identities=19% Similarity=0.244 Sum_probs=95.1
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..+..++...|+.+|+|-|.|+|.++.+++..++ |.++++.+|+.....+.|.+.+.+.+++ .
T Consensus 95 a~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~----------------ptGhl~tfefH~~Ra~ka~eeFr~hgi~-~ 157 (314)
T KOG2915|consen 95 AMILSMLEIRPGSVVLESGTGSGSLSHAIARAVA----------------PTGHLYTFEFHETRAEKALEEFREHGIG-D 157 (314)
T ss_pred HHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhC----------------cCcceEEEEecHHHHHHHHHHHHHhCCC-c
Confidence 4577888999999999999999999999999987 7899999999999999999999999988 8
Q ss_pred ceEEEEcccccCCCC--CCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEE
Q 036563 153 SLLWVEGDAEALCFE--DSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~--~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~ 204 (288)
++.+..-|+....|. +..+|.|++ .++.+..++..+..+||.+|.-+
T Consensus 158 ~vt~~hrDVc~~GF~~ks~~aDaVFL-----DlPaPw~AiPha~~~lk~~g~r~ 206 (314)
T KOG2915|consen 158 NVTVTHRDVCGSGFLIKSLKADAVFL-----DLPAPWEAIPHAAKILKDEGGRL 206 (314)
T ss_pred ceEEEEeecccCCccccccccceEEE-----cCCChhhhhhhhHHHhhhcCceE
Confidence 999999999876544 457898875 45678888999999999877544
No 177
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.79 E-value=4.4e-08 Score=86.89 Aligned_cols=91 Identities=25% Similarity=0.324 Sum_probs=74.1
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
..+.+.+++.+...++.+|||||||+|.++..+++.. .+++++|+++.+++.+++++...+
T Consensus 22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-------------------~~V~avEiD~~li~~l~~~~~~~~ 82 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA-------------------KKVIAIEIDPRMVAELKKRFQNSP 82 (294)
T ss_pred HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC-------------------CcEEEEECCHHHHHHHHHHHHhcC
Confidence 3455677777777788899999999999999998863 689999999999999999887654
Q ss_pred CCCCceEEEEcccccCCCCCCCeeEEEeccccc
Q 036563 149 YPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIR 181 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~ 181 (288)
.. ++++++.+|+...+++ .+|.|+++...+
T Consensus 83 ~~-~~v~ii~~Dal~~~~~--~~d~VvaNlPY~ 112 (294)
T PTZ00338 83 LA-SKLEVIEGDALKTEFP--YFDVCVANVPYQ 112 (294)
T ss_pred CC-CcEEEEECCHhhhccc--ccCEEEecCCcc
Confidence 33 5899999999876543 589998876654
No 178
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.78 E-value=3.3e-08 Score=87.00 Aligned_cols=88 Identities=18% Similarity=0.284 Sum_probs=70.2
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
....+.+++.+...++.+|||+|||+|.++..+++.. .+++++|+++.|++.++++...
T Consensus 28 ~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~-------------------~~v~avE~d~~~~~~~~~~~~~-- 86 (272)
T PRK00274 28 ENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA-------------------AKVTAVEIDRDLAPILAETFAE-- 86 (272)
T ss_pred HHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC-------------------CcEEEEECCHHHHHHHHHhhcc--
Confidence 3445667777777778899999999999999999884 5899999999999999876532
Q ss_pred CCCCceEEEEcccccCCCCCCCeeEEEecccc
Q 036563 149 YPDKSLLWVEGDAEALCFEDSTMDGYTIAFGI 180 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l 180 (288)
++++++.+|+.+.++++-.+|.|+++...
T Consensus 87 ---~~v~~i~~D~~~~~~~~~~~~~vv~NlPY 115 (272)
T PRK00274 87 ---DNLTIIEGDALKVDLSELQPLKVVANLPY 115 (272)
T ss_pred ---CceEEEEChhhcCCHHHcCcceEEEeCCc
Confidence 47999999998876553225888887664
No 179
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.75 E-value=7.2e-08 Score=88.08 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=89.9
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+.+||++-|=||.++.+++... ..+++.+|.|...++.+++++.-++++..+..|+++|+.+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gG------------------A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~ 279 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGG------------------ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFK 279 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcC------------------CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHH
Confidence 7899999999999999998874 2499999999999999999999999876778999999876
Q ss_pred C----CCCCCCeeEEEeccc-cc--------cccCHHHHHHHHHhhccCCcEEEEEeccCC
Q 036563 164 L----CFEDSTMDGYTIAFG-IR--------NVTHIEKALAEAYRVLKRGGRFLCLELSHV 211 (288)
Q Consensus 164 ~----~~~~~~~D~v~~~~~-l~--------~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 211 (288)
. .-...+||+|++... +. ...+...++..+.++|+|||.+++...+..
T Consensus 280 ~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 280 WLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred HHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 5 233458999998654 11 112346689999999999999998776654
No 180
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.75 E-value=3.2e-08 Score=87.16 Aligned_cols=114 Identities=14% Similarity=0.164 Sum_probs=79.1
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh-----------------
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE----------------- 146 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~----------------- 146 (288)
..+|+..||+||.-.-.++-...... +......+|+|+|+|+.+++.|++..-.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~---------~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~ 186 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTL---------GTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFM 186 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhh---------cccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcc
Confidence 47999999999974433333221000 0000146899999999999999876211
Q ss_pred ------cC---CC---CCceEEEEcccccCCCC-CCCeeEEEeccccccccC--HHHHHHHHHhhccCCcEEEEE
Q 036563 147 ------RG---YP---DKSLLWVEGDAEALCFE-DSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 147 ------~~---~~---~~~v~~~~~d~~~~~~~-~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~ 206 (288)
.+ +. ...|.|...|+...+++ .+.||+|+|.+++.+++. ..++++++.+.|+|||+|++.
T Consensus 187 ~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 187 RGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred cccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 00 00 14577888887764433 568999999999998864 577999999999999998863
No 181
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.75 E-value=1.4e-07 Score=82.12 Aligned_cols=88 Identities=17% Similarity=0.232 Sum_probs=70.3
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
..+.+.+++.+...++.+|||+|||+|.++..+++.. ..++++|+++.+++.++......
T Consensus 15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~-------------------~~v~~iE~d~~~~~~l~~~~~~~- 74 (253)
T TIGR00755 15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA-------------------KKVTAIEIDPRLAEILRKLLSLY- 74 (253)
T ss_pred HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC-------------------CcEEEEECCHHHHHHHHHHhCcC-
Confidence 4455677777777778899999999999999999885 46999999999999998776432
Q ss_pred CCCCceEEEEcccccCCCCCCCee---EEEeccccc
Q 036563 149 YPDKSLLWVEGDAEALCFEDSTMD---GYTIAFGIR 181 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~~~~~~~D---~v~~~~~l~ 181 (288)
+++.++.+|+...+++ .+| +|+++..++
T Consensus 75 ---~~v~v~~~D~~~~~~~--~~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 75 ---ERLEVIEGDALKVDLP--DFPKQLKVVSNLPYN 105 (253)
T ss_pred ---CcEEEEECchhcCChh--HcCCcceEEEcCChh
Confidence 5899999999887654 366 777766543
No 182
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.73 E-value=2.6e-06 Score=74.14 Aligned_cols=147 Identities=18% Similarity=0.158 Sum_probs=98.3
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc--------------
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER-------------- 147 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-------------- 147 (288)
..+.+||-.|||.|+++..++... ..+.+.|.|--|+-...-.+...
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G-------------------~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~ 115 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLG-------------------YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHS 115 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhcc-------------------ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceec
Confidence 345799999999999999999873 78999999998875544322210
Q ss_pred --------------CCC----------CCceEEEEcccccCCCCC---CCeeEEEeccccccccCHHHHHHHHHhhccCC
Q 036563 148 --------------GYP----------DKSLLWVEGDAEALCFED---STMDGYTIAFGIRNVTHIEKALAEAYRVLKRG 200 (288)
Q Consensus 148 --------------~~~----------~~~v~~~~~d~~~~~~~~---~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg 200 (288)
..+ ..++....||+...-.++ ++||+|+..+-+.-..+....|+.+.++||||
T Consensus 116 ~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpg 195 (270)
T PF07942_consen 116 FSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPG 195 (270)
T ss_pred ccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccC
Confidence 000 134566667766653333 68999998877766678889999999999999
Q ss_pred cEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEE
Q 036563 201 GRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYEN 274 (288)
Q Consensus 201 G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 274 (288)
|..+-...-. . ...+. + .....+- -++.+++..+.++.||+++..+.
T Consensus 196 G~WIN~GPLl--y------------h~~~~-~---~~~~~sv---------eLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 196 GYWINFGPLL--Y------------HFEPM-S---IPNEMSV---------ELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CEEEecCCcc--c------------cCCCC-C---CCCCccc---------CCCHHHHHHHHHHCCCEEEEEEE
Confidence 9877321100 0 00000 0 0000000 13789999999999999988766
No 183
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.73 E-value=1.8e-07 Score=87.80 Aligned_cols=118 Identities=16% Similarity=0.184 Sum_probs=92.3
Q ss_pred Hhhc--CCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 76 VSKL--NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 76 ~~~l--~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
+..+ ...++.+|||+|||+|.-+.++++.++ +.+.+++.|+++..++..++++...++. +
T Consensus 104 ~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~----------------~~g~lvA~D~~~~R~~~L~~nl~r~G~~--n 165 (470)
T PRK11933 104 VAALFADDNAPQRVLDMAAAPGSKTTQIAALMN----------------NQGAIVANEYSASRVKVLHANISRCGVS--N 165 (470)
T ss_pred HHHhccCCCCCCEEEEeCCCccHHHHHHHHHcC----------------CCCEEEEEeCCHHHHHHHHHHHHHcCCC--e
Confidence 4445 667899999999999999999999875 4579999999999999999999998884 7
Q ss_pred eEEEEcccccCC-CCCCCeeEEEeccccc------cccCH----------------HHHHHHHHhhccCCcEEEEEeccC
Q 036563 154 LLWVEGDAEALC-FEDSTMDGYTIAFGIR------NVTHI----------------EKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 154 v~~~~~d~~~~~-~~~~~~D~v~~~~~l~------~~~~~----------------~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
+.+...|...+. ...+.||.|++..... .-++. .++|.++.+.|||||.++...++.
T Consensus 166 v~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 166 VALTHFDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred EEEEeCchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 888888887653 2235799999644322 11111 457999999999999998776664
Q ss_pred C
Q 036563 211 V 211 (288)
Q Consensus 211 ~ 211 (288)
.
T Consensus 246 ~ 246 (470)
T PRK11933 246 N 246 (470)
T ss_pred C
Confidence 3
No 184
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.73 E-value=2.5e-07 Score=80.58 Aligned_cols=111 Identities=18% Similarity=0.156 Sum_probs=78.9
Q ss_pred CCeEEEecCCccH----HHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh-----cCCC----
Q 036563 84 GMKHLDVAGGTGD----VAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE-----RGYP---- 150 (288)
Q Consensus 84 ~~~vLDiG~G~G~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~-----~~~~---- 150 (288)
..+|+-.||+||. ++..+.+..+. ..+...+|+++|+|..+++.|+...-. .+++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~------------~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~ 164 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGK------------LAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELL 164 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhcc------------ccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHH
Confidence 5799999999996 44444444320 111358999999999999999775332 1111
Q ss_pred ------------------CCceEEEEcccccCCCCCCCeeEEEeccccccccCH--HHHHHHHHhhccCCcEEEEE
Q 036563 151 ------------------DKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHI--EKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 151 ------------------~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~ 206 (288)
...|.|...|+...++..+.||+|+|.+++-+++.. .++++.++..|+|||+|++.
T Consensus 165 ~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 165 RRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred hhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 134556666655444344579999999999988754 67999999999999999973
No 185
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.73 E-value=1.7e-07 Score=82.33 Aligned_cols=123 Identities=19% Similarity=0.171 Sum_probs=85.8
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc
Q 036563 68 HRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER 147 (288)
Q Consensus 68 ~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 147 (288)
++..++.+.+.. .+.+|||+-|=||.++.+++... ..+++.+|.|..+++.+++++.-+
T Consensus 111 qR~nR~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~gG------------------A~~v~~VD~S~~al~~a~~N~~lN 169 (286)
T PF10672_consen 111 QRENRKWVRKYA---KGKRVLNLFSYTGGFSVAAAAGG------------------AKEVVSVDSSKRALEWAKENAALN 169 (286)
T ss_dssp GHHHHHHHHHHC---TTCEEEEET-TTTHHHHHHHHTT------------------ESEEEEEES-HHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHc---CCCceEEecCCCCHHHHHHHHCC------------------CCEEEEEeCCHHHHHHHHHHHHHc
Confidence 344444454443 36799999999999999887653 258999999999999999999988
Q ss_pred CCCCCceEEEEcccccC-C--CCCCCeeEEEeccc-cc-----cccCHHHHHHHHHhhccCCcEEEEEeccCC
Q 036563 148 GYPDKSLLWVEGDAEAL-C--FEDSTMDGYTIAFG-IR-----NVTHIEKALAEAYRVLKRGGRFLCLELSHV 211 (288)
Q Consensus 148 ~~~~~~v~~~~~d~~~~-~--~~~~~~D~v~~~~~-l~-----~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 211 (288)
+++..+++++..|+.+. . -..++||+|++... +. -..+..+++..+.++|+|||.+++...++.
T Consensus 170 g~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~ 242 (286)
T PF10672_consen 170 GLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHH 242 (286)
T ss_dssp T-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TT
T ss_pred CCCccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence 87656889999998653 1 12458999999654 11 112346688899999999999987766554
No 186
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.72 E-value=3.2e-07 Score=84.32 Aligned_cols=105 Identities=11% Similarity=0.089 Sum_probs=78.2
Q ss_pred hhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEE
Q 036563 77 SKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLW 156 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~ 156 (288)
..+...++.+|||++||+|.++..++.. ..+++++|+++.+++.++++....++. ++++
T Consensus 227 ~~l~~~~~~~vLDL~cG~G~~~l~la~~-------------------~~~v~~vE~~~~av~~a~~N~~~~~~~--~~~~ 285 (374)
T TIGR02085 227 QWVREIPVTQMWDLFCGVGGFGLHCAGP-------------------DTQLTGIEIESEAIACAQQSAQMLGLD--NLSF 285 (374)
T ss_pred HHHHhcCCCEEEEccCCccHHHHHHhhc-------------------CCeEEEEECCHHHHHHHHHHHHHcCCC--cEEE
Confidence 3443344579999999999999988864 378999999999999999999887763 7999
Q ss_pred EEcccccCCC-CCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 157 VEGDAEALCF-EDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 157 ~~~d~~~~~~-~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
..+|+.+... ...+||+|+++..-... ...+++.+. .++|++.+++
T Consensus 286 ~~~d~~~~~~~~~~~~D~vi~DPPr~G~--~~~~l~~l~-~~~p~~ivyv 332 (374)
T TIGR02085 286 AALDSAKFATAQMSAPELVLVNPPRRGI--GKELCDYLS-QMAPKFILYS 332 (374)
T ss_pred EECCHHHHHHhcCCCCCEEEECCCCCCC--cHHHHHHHH-hcCCCeEEEE
Confidence 9999876421 12459999998764322 234555554 4688887775
No 187
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.71 E-value=5.9e-07 Score=79.06 Aligned_cols=121 Identities=14% Similarity=0.139 Sum_probs=80.2
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
.++...++...+.+|||+|||+|..+..+.+..+ ...+++++|.|+.|++.++......... .
T Consensus 23 ~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~----------------~~~~~~~vd~s~~~~~l~~~l~~~~~~~-~ 85 (274)
T PF09243_consen 23 SELRKRLPDFRPRSVLDFGSGPGTALWAAREVWP----------------SLKEYTCVDRSPEMLELAKRLLRAGPNN-R 85 (274)
T ss_pred HHHHHhCcCCCCceEEEecCChHHHHHHHHHHhc----------------CceeeeeecCCHHHHHHHHHHHhccccc-c
Confidence 3455555555667999999999987777766653 2368999999999999998876544211 1
Q ss_pred ceEEEEccccc-CCCCCCCeeEEEeccccccccC--HHHHHHHHHhhccCCcEEEEEeccCCChH
Q 036563 153 SLLWVEGDAEA-LCFEDSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCLELSHVDIP 214 (288)
Q Consensus 153 ~v~~~~~d~~~-~~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~ 214 (288)
...+......+ .++ ...|+|+++++|..+++ ...+++.+.+.+.+ .++++|...+...
T Consensus 86 ~~~~~~~~~~~~~~~--~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf 146 (274)
T PF09243_consen 86 NAEWRRVLYRDFLPF--PPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGF 146 (274)
T ss_pred cchhhhhhhcccccC--CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHH
Confidence 11111111111 122 23499999999988876 34466677666655 8999998887443
No 188
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.69 E-value=4.1e-07 Score=75.65 Aligned_cols=103 Identities=13% Similarity=0.011 Sum_probs=76.4
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
.+.++||++||+|.++..++.+.. ..++++|.++.+++.+++++...+.. .+++++.+|+.
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga------------------~~v~~vE~~~~a~~~~~~N~~~~~~~-~~~~~~~~D~~ 109 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA------------------KVAFLEEDDRKANQTLKENLALLKSG-EQAEVVRNSAL 109 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC------------------CEEEEEeCCHHHHHHHHHHHHHhCCc-ccEEEEehhHH
Confidence 467999999999999999998852 58999999999999999998887765 57899999985
Q ss_pred cC-C-C--CCCCeeEEEeccccccccCHHHHHHHHH--hhccCCcEEEE
Q 036563 163 AL-C-F--EDSTMDGYTIAFGIRNVTHIEKALAEAY--RVLKRGGRFLC 205 (288)
Q Consensus 163 ~~-~-~--~~~~~D~v~~~~~l~~~~~~~~~l~~~~--~~L~pgG~l~i 205 (288)
.. . . ....+|+|+....+.. ......+..+. .+|+++|.+++
T Consensus 110 ~~l~~~~~~~~~~dvv~~DPPy~~-~~~~~~l~~l~~~~~l~~~~iiv~ 157 (189)
T TIGR00095 110 RALKFLAKKPTFDNVIYLDPPFFN-GALQALLELCENNWILEDTVLIVV 157 (189)
T ss_pred HHHHHhhccCCCceEEEECcCCCC-CcHHHHHHHHHHCCCCCCCeEEEE
Confidence 43 1 1 1224788888776543 23344454443 46788887664
No 189
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.69 E-value=8e-08 Score=79.40 Aligned_cols=117 Identities=18% Similarity=0.241 Sum_probs=83.3
Q ss_pred HHHHHHHhhcCC--CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc
Q 036563 70 LWKDRLVSKLNP--FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER 147 (288)
Q Consensus 70 ~~~~~~~~~l~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 147 (288)
+.++.+...+.. -.+.++||+-||||.++..++.+. ..+++.+|.++..+...++++...
T Consensus 27 rvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG------------------A~~v~fVE~~~~a~~~i~~N~~~l 88 (183)
T PF03602_consen 27 RVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRG------------------AKSVVFVEKNRKAIKIIKKNLEKL 88 (183)
T ss_dssp HHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-------------------SEEEEEES-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC------------------CCeEEEEECCHHHHHHHHHHHHHh
Confidence 444555555543 367899999999999999988885 379999999999999999999888
Q ss_pred CCCCCceEEEEcccccC----CCCCCCeeEEEeccccccccCHHHHHHHHH--hhccCCcEEEE
Q 036563 148 GYPDKSLLWVEGDAEAL----CFEDSTMDGYTIAFGIRNVTHIEKALAEAY--RVLKRGGRFLC 205 (288)
Q Consensus 148 ~~~~~~v~~~~~d~~~~----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~--~~L~pgG~l~i 205 (288)
+.. .++.++..|+... .....+||+|++............++..+. .+|+++|.+++
T Consensus 89 ~~~-~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~ 151 (183)
T PF03602_consen 89 GLE-DKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIII 151 (183)
T ss_dssp T-G-GGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEE
T ss_pred CCC-cceeeeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEE
Confidence 776 4688888886443 124578999999887654322366777776 89999998875
No 190
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.67 E-value=2.5e-07 Score=77.25 Aligned_cols=106 Identities=23% Similarity=0.347 Sum_probs=77.3
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..+.+.+ .++.+|+|+.||-|.++..++... +...|+++|++|...+..++++..+++. .
T Consensus 93 ~Ri~~~v--~~~e~VlD~faGIG~f~l~~ak~~-----------------~~~~V~A~d~Np~a~~~L~~Ni~lNkv~-~ 152 (200)
T PF02475_consen 93 RRIANLV--KPGEVVLDMFAGIGPFSLPIAKHG-----------------KAKRVYAVDLNPDAVEYLKENIRLNKVE-N 152 (200)
T ss_dssp HHHHTC----TT-EEEETT-TTTTTHHHHHHHT------------------SSEEEEEES-HHHHHHHHHHHHHTT-T-T
T ss_pred HHHHhcC--CcceEEEEccCCccHHHHHHhhhc-----------------CccEEEEecCCHHHHHHHHHHHHHcCCC-C
Confidence 3454443 457899999999999999999854 3578999999999999999999999887 7
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEE
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRF 203 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l 203 (288)
++..+.+|+..+.. ...+|-|+++.. .....+|..+.+++++||.+
T Consensus 153 ~i~~~~~D~~~~~~-~~~~drvim~lp----~~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 153 RIEVINGDAREFLP-EGKFDRVIMNLP----ESSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp TEEEEES-GGG----TT-EEEEEE--T----SSGGGGHHHHHHHEEEEEEE
T ss_pred eEEEEcCCHHHhcC-ccccCEEEECCh----HHHHHHHHHHHHHhcCCcEE
Confidence 89999999988754 678999998664 23346788899999999876
No 191
>PLN02823 spermine synthase
Probab=98.64 E-value=3.3e-07 Score=82.67 Aligned_cols=107 Identities=20% Similarity=0.222 Sum_probs=80.9
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc--CCCCCceEEEEcc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER--GYPDKSLLWVEGD 160 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~v~~~~~d 160 (288)
.+.+||.||+|.|..+..+++.. +..+++++|+++++++.+++.+... .+.+++++++.+|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-----------------~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~D 165 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-----------------TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIIND 165 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-----------------CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEECh
Confidence 45689999999999999888864 3478999999999999999987532 1334799999999
Q ss_pred cccC-CCCCCCeeEEEecccccc---ccC---HHHHHH-HHHhhccCCcEEEEE
Q 036563 161 AEAL-CFEDSTMDGYTIAFGIRN---VTH---IEKALA-EAYRVLKRGGRFLCL 206 (288)
Q Consensus 161 ~~~~-~~~~~~~D~v~~~~~l~~---~~~---~~~~l~-~~~~~L~pgG~l~i~ 206 (288)
+... ....++||+|++...-.. ... ...+++ .+++.|+|||.+++.
T Consensus 166 a~~~L~~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 166 ARAELEKRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred hHHHHhhCCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 8764 334568999998742110 000 245787 899999999998753
No 192
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.63 E-value=6.4e-07 Score=80.32 Aligned_cols=154 Identities=19% Similarity=0.231 Sum_probs=93.4
Q ss_pred HHHHHHHhHhhHHHhhhhhhhh--hhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccc
Q 036563 43 QLVSNVFSSVAKNYDLMNDLMS--GGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDD 120 (288)
Q Consensus 43 ~~~~~~~~~~~~~y~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~ 120 (288)
..+.++|+..-..+....+... .-....+.+.+...+...++.+|+|.+||+|.+...+.+.+......
T Consensus 4 d~~g~~yE~~l~~~~~~~~k~~G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~--------- 74 (311)
T PF02384_consen 4 DILGDLYEYFLKKFAKESRKKLGQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNK--------- 74 (311)
T ss_dssp HHHHHHHHHHHHHHHHCTTTSCGGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHH---------
T ss_pred cHHHHHHHHHHHHHHHHhccccceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccc---------
Confidence 3456667666555532111110 11123455677788877778899999999999999888754100000
Q ss_pred cCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCC-C-CCCeeEEEeccccccc--cC-----------
Q 036563 121 LQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCF-E-DSTMDGYTIAFGIRNV--TH----------- 185 (288)
Q Consensus 121 ~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~-~-~~~~D~v~~~~~l~~~--~~----------- 185 (288)
.....++|+|+++.+...++.++.-.+....+..+..+|....+. . ...||+|+++..+... .+
T Consensus 75 -~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~ 153 (311)
T PF02384_consen 75 -IKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKK 153 (311)
T ss_dssp -HCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTT
T ss_pred -cccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccccccccccCCCCccccccccccccccccccc
Confidence 035899999999999999887765544432334577777654332 2 4689999998775433 10
Q ss_pred --------HHHHHHHHHhhccCCcEEEEE
Q 036563 186 --------IEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 186 --------~~~~l~~~~~~L~pgG~l~i~ 206 (288)
...++..+.+.|++||++.++
T Consensus 154 ~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~I 182 (311)
T PF02384_consen 154 YFPPKSNAEYAFIEHALSLLKPGGRAAII 182 (311)
T ss_dssp CSSSTTEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cCCCccchhhhhHHHHHhhcccccceeEE
Confidence 124789999999999997754
No 193
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.61 E-value=2.1e-06 Score=71.86 Aligned_cols=107 Identities=19% Similarity=0.211 Sum_probs=77.9
Q ss_pred hcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 78 KLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
.++..++.+||-+|+++|....++.+..+ +.+.|++++.|+............. +|+-.+
T Consensus 68 ~~~ik~gskVLYLGAasGTTVSHvSDIvg----------------~~G~VYaVEfs~r~~rdL~~la~~R----~NIiPI 127 (229)
T PF01269_consen 68 NIPIKPGSKVLYLGAASGTTVSHVSDIVG----------------PDGVVYAVEFSPRSMRDLLNLAKKR----PNIIPI 127 (229)
T ss_dssp --S--TT-EEEEETTTTSHHHHHHHHHHT----------------TTSEEEEEESSHHHHHHHHHHHHHS----TTEEEE
T ss_pred ccCCCCCCEEEEecccCCCccchhhhccC----------------CCCcEEEEEecchhHHHHHHHhccC----Cceeee
Confidence 45567899999999999999999999986 5789999999997765555444444 799999
Q ss_pred EcccccCC---CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 158 EGDAEALC---FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 158 ~~d~~~~~---~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
..|+.... ..-+.+|+|++.-+ ......-++.++...||+||.++++
T Consensus 128 l~DAr~P~~Y~~lv~~VDvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 128 LEDARHPEKYRMLVEMVDVIFQDVA--QPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp ES-TTSGGGGTTTS--EEEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eccCCChHHhhcccccccEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEE
Confidence 99997642 22348999998655 2234556788999999999999874
No 194
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.60 E-value=5.4e-06 Score=69.76 Aligned_cols=115 Identities=20% Similarity=0.260 Sum_probs=87.8
Q ss_pred hHHHHHHHHhhcCC----CC-CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHH
Q 036563 68 HRLWKDRLVSKLNP----FP-GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKK 142 (288)
Q Consensus 68 ~~~~~~~~~~~l~~----~~-~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~ 142 (288)
.+.|.+.+...+.. .. +.+++|||+|.|..+..++=.. |..+++.+|....-....++
T Consensus 47 ~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~-----------------p~~~vtLles~~Kk~~FL~~ 109 (215)
T COG0357 47 EELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAF-----------------PDLKVTLLESLGKKIAFLRE 109 (215)
T ss_pred HHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhc-----------------cCCcEEEEccCchHHHHHHH
Confidence 45566555554421 22 5799999999999999888544 56779999999988888888
Q ss_pred HhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 143 RALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 143 ~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
...+.++ +|++++.+-++++......||+|++..+ .+...+..-+..++++||.++.
T Consensus 110 ~~~eL~L--~nv~i~~~RaE~~~~~~~~~D~vtsRAv----a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 110 VKKELGL--ENVEIVHGRAEEFGQEKKQYDVVTSRAV----ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred HHHHhCC--CCeEEehhhHhhcccccccCcEEEeehc----cchHHHHHHHHHhcccCCcchh
Confidence 8888887 4899999999887532211999997654 4567788889999999998863
No 195
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=2.5e-07 Score=76.18 Aligned_cols=112 Identities=22% Similarity=0.251 Sum_probs=86.0
Q ss_pred HHHhhcC--CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC---
Q 036563 74 RLVSKLN--PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG--- 148 (288)
Q Consensus 74 ~~~~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~--- 148 (288)
.+++.|. ..|+.+.||+|+|+|.++..++..++. ++...+|+|.-++.++.+++++...-
T Consensus 71 ~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~---------------~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~ 135 (237)
T KOG1661|consen 71 TALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGA---------------TGGNVHGIEHIPELVEYSKKNLDKDITTS 135 (237)
T ss_pred HHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcC---------------CCccccchhhhHHHHHHHHHHHHhhccCc
Confidence 4445555 678999999999999999999877642 33445999999999999998876542
Q ss_pred -----CCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 149 -----YPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 149 -----~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+...++.++.+|.....-+..+||.|.+.... ....+++...|++||.+++.
T Consensus 136 e~~~~~~~~~l~ivvGDgr~g~~e~a~YDaIhvGAaa------~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 136 ESSSKLKRGELSIVVGDGRKGYAEQAPYDAIHVGAAA------SELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred hhhhhhccCceEEEeCCccccCCccCCcceEEEccCc------cccHHHHHHhhccCCeEEEe
Confidence 33467889999998876677789999987442 33455677788999999873
No 196
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.60 E-value=7.8e-07 Score=75.90 Aligned_cols=144 Identities=16% Similarity=0.109 Sum_probs=82.6
Q ss_pred HhhcCC-CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 76 VSKLNP-FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 76 ~~~l~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
.+.++. .++.+|||+|||||.++..+++.. ..+++++|++++|+...... . +++
T Consensus 67 l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~g------------------a~~v~avD~~~~~l~~~l~~---~----~~v 121 (228)
T TIGR00478 67 LEEFNIDVKNKIVLDVGSSTGGFTDCALQKG------------------AKEVYGVDVGYNQLAEKLRQ---D----ERV 121 (228)
T ss_pred HHhcCCCCCCCEEEEcccCCCHHHHHHHHcC------------------CCEEEEEeCCHHHHHHHHhc---C----CCe
Confidence 344433 456789999999999999999872 37899999999888752211 1 232
Q ss_pred E-EEEcccccCC-----CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccc
Q 036563 155 L-WVEGDAEALC-----FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVI 228 (288)
Q Consensus 155 ~-~~~~d~~~~~-----~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 228 (288)
. +...|+.... ..-..+|+++++.. ..+..+.+.|+| |.+++. ..|+...-. ....
T Consensus 122 ~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~--------~~l~~i~~~l~~-~~~~~L--~KPqFE~~~---~~~~---- 183 (228)
T TIGR00478 122 KVLERTNIRYVTPADIFPDFATFDVSFISLI--------SILPELDLLLNP-NDLTLL--FKPQFEAGR---EKKN---- 183 (228)
T ss_pred eEeecCCcccCCHhHcCCCceeeeEEEeehH--------hHHHHHHHHhCc-CeEEEE--cChHhhhcH---hhcC----
Confidence 2 3333443221 11124676665443 248889999999 877652 233221111 1110
Q ss_pred ccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEE
Q 036563 229 PAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYEN 274 (288)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 274 (288)
. +.++. +...+. .-.+++...+.+.||.+..+..
T Consensus 184 -~-~giv~-~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 217 (228)
T TIGR00478 184 -K-KGVVR-DKEAIA---------LALHKVIDKGESPDFQEKKIIF 217 (228)
T ss_pred -c-CCeec-CHHHHH---------HHHHHHHHHHHcCCCeEeeEEE
Confidence 0 11111 111111 1346777888889999887754
No 197
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.57 E-value=1.5e-06 Score=72.54 Aligned_cols=122 Identities=16% Similarity=0.185 Sum_probs=87.9
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
..++|||||=+......- . +...++.+|+++. .-.+.+.|+.+
T Consensus 52 ~lrlLEVGals~~N~~s~---~-----------------~~fdvt~IDLns~-----------------~~~I~qqDFm~ 94 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACST---S-----------------GWFDVTRIDLNSQ-----------------HPGILQQDFME 94 (219)
T ss_pred cceEEeecccCCCCcccc---c-----------------CceeeEEeecCCC-----------------CCCceeecccc
Confidence 369999999654322211 1 2356999999772 34567788877
Q ss_pred CCCC---CCCeeEEEeccccccccCHH---HHHHHHHhhccCCcE-----EEEEeccCCChHHHHHHHHHhhcccccccc
Q 036563 164 LCFE---DSTMDGYTIAFGIRNVTHIE---KALAEAYRVLKRGGR-----FLCLELSHVDIPVFKELYDYYSFSVIPAIG 232 (288)
Q Consensus 164 ~~~~---~~~~D~v~~~~~l~~~~~~~---~~l~~~~~~L~pgG~-----l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (288)
.|.| +++||+|.++.+|.+++++. .+++.+.++|+|+|. ++++-. ..- +
T Consensus 95 rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP---~~C-v---------------- 154 (219)
T PF11968_consen 95 RPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLP---LPC-V---------------- 154 (219)
T ss_pred CCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeC---chH-h----------------
Confidence 7653 57899999999999999864 589999999999999 765421 110 0
Q ss_pred ccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeC
Q 036563 233 ELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVG 277 (288)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~ 277 (288)
...++++.+.|..+|+..||..+..+....
T Consensus 155 ---------------~NSRy~~~~~l~~im~~LGf~~~~~~~~~K 184 (219)
T PF11968_consen 155 ---------------TNSRYMTEERLREIMESLGFTRVKYKKSKK 184 (219)
T ss_pred ---------------hcccccCHHHHHHHHHhCCcEEEEEEecCe
Confidence 012366889999999999999998876543
No 198
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.55 E-value=5.8e-07 Score=85.69 Aligned_cols=106 Identities=15% Similarity=0.148 Sum_probs=86.6
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
.+-.+||||||.|.++..++... |+..++|+|+....+..+.++....++. |+.++..|+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~-----------------p~~~~iGiE~~~~~~~~~~~~~~~~~l~--N~~~~~~~~~ 407 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMN-----------------PDALFIGVEVYLNGVANVLKLAGEQNIT--NFLLFPNNLD 407 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhC-----------------CCCCEEEEEeeHHHHHHHHHHHHHcCCC--eEEEEcCCHH
Confidence 34579999999999999999998 6799999999999888888887777774 8888888875
Q ss_pred cC--CCCCCCeeEEEeccccccccC--------HHHHHHHHHhhccCCcEEEEEe
Q 036563 163 AL--CFEDSTMDGYTIAFGIRNVTH--------IEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 163 ~~--~~~~~~~D~v~~~~~l~~~~~--------~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
.+ -++++++|.|++++.--+... -..+++.+.++|+|||.+.+.+
T Consensus 408 ~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 408 LILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred HHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 43 367788999999887444331 1568999999999999998754
No 199
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.53 E-value=3.1e-06 Score=70.93 Aligned_cols=110 Identities=20% Similarity=0.258 Sum_probs=88.2
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+++.+. +.++||||.=||..+..++..++ ++++++++|++++..+.+....+..+.. .
T Consensus 66 ~~li~~~~---ak~~lelGvfTGySaL~~Alalp----------------~dGrv~a~eid~~~~~~~~~~~k~agv~-~ 125 (237)
T KOG1663|consen 66 QMLIRLLN---AKRTLELGVFTGYSALAVALALP----------------EDGRVVAIEIDADAYEIGLELVKLAGVD-H 125 (237)
T ss_pred HHHHHHhC---CceEEEEecccCHHHHHHHHhcC----------------CCceEEEEecChHHHHHhHHHHHhcccc-c
Confidence 44444443 57999999999999999999986 6799999999999999998888888777 8
Q ss_pred ceEEEEcccccC------CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 153 SLLWVEGDAEAL------CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 153 ~v~~~~~d~~~~------~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
.+.++++++.+. ....++||.++...- -.+......++.+++|+||.+++
T Consensus 126 KI~~i~g~a~esLd~l~~~~~~~tfDfaFvDad---K~nY~~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 126 KITFIEGPALESLDELLADGESGTFDFAFVDAD---KDNYSNYYERLLRLLRVGGVIVV 181 (237)
T ss_pred eeeeeecchhhhHHHHHhcCCCCceeEEEEccc---hHHHHHHHHHHHhhcccccEEEE
Confidence 899999987553 245678999996432 12345788999999999999986
No 200
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.53 E-value=8.2e-07 Score=76.76 Aligned_cols=147 Identities=17% Similarity=0.200 Sum_probs=89.3
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC-------------
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY------------- 149 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~------------- 149 (288)
++.++||||||+-......+... -.+|+..|..+..++..++.+...+.
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~------------------f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~l 117 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEW------------------FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCEL 117 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGT------------------EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHh------------------hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhc
Confidence 46689999999955432222221 26799999999888877776544311
Q ss_pred --CC-----------Cce-EEEEcccccCC-CCC-----CCeeEEEecccccccc-C---HHHHHHHHHhhccCCcEEEE
Q 036563 150 --PD-----------KSL-LWVEGDAEALC-FED-----STMDGYTIAFGIRNVT-H---IEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 150 --~~-----------~~v-~~~~~d~~~~~-~~~-----~~~D~v~~~~~l~~~~-~---~~~~l~~~~~~L~pgG~l~i 205 (288)
.. ..+ +++.+|+.+.+ +.. .++|+|++.++++... + ..++++++.++|||||.|++
T Consensus 118 Eg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil 197 (256)
T PF01234_consen 118 EGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLIL 197 (256)
T ss_dssp TTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred cCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 00 112 36677876643 222 2599999999987553 3 46789999999999999998
Q ss_pred EeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEE
Q 036563 206 LELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYEN 274 (288)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 274 (288)
+....... |. .|. . .+. .-..+.+.+++.|+++||.+++.+.
T Consensus 198 ~~~l~~t~---------Y~------vG~-----~-~F~------~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 198 AGVLGSTY---------YM------VGG-----H-KFP------CLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp EEESS-SE---------EE------ETT-----E-EEE---------B-HHHHHHHHHHTTEEEEEEEG
T ss_pred EEEcCcee---------EE------ECC-----E-ecc------cccCCHHHHHHHHHHcCCEEEeccc
Confidence 65432110 00 010 0 010 0134889999999999999998874
No 201
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.52 E-value=1e-06 Score=80.98 Aligned_cols=100 Identities=25% Similarity=0.227 Sum_probs=79.8
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+.+|||++||+|..+..++...+ ..+|+++|+++.+++.+++++..+++. ++.+..+|+..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~-----------------~~~V~a~Din~~Av~~a~~N~~~N~~~--~~~v~~~Da~~ 118 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETG-----------------VEKVTLNDINPDAVELIKKNLELNGLE--NEKVFNKDANA 118 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCC-----------------CCEEEEEeCCHHHHHHHHHHHHHhCCC--ceEEEhhhHHH
Confidence 46899999999999999988752 358999999999999999999887764 67788899866
Q ss_pred CCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 164 LCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 164 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+....+.||+|++... ..+..++..+.+.+++||.+++.
T Consensus 119 ~l~~~~~fD~V~lDP~----Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 119 LLHEERKFDVVDIDPF----GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred HHhhcCCCCEEEECCC----CCcHHHHHHHHHHhcCCCEEEEE
Confidence 4211456999998652 23466788877888999999975
No 202
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.52 E-value=1.3e-06 Score=76.69 Aligned_cols=107 Identities=21% Similarity=0.291 Sum_probs=85.4
Q ss_pred CCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC--CCCCceEEE
Q 036563 80 NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG--YPDKSLLWV 157 (288)
Q Consensus 80 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~v~~~ 157 (288)
+..+ .+||-||.|.|..+..++++. +..+++.+|+++..++.+++.+.... ..++++.++
T Consensus 74 h~~p-k~VLiiGgGdG~tlRevlkh~-----------------~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~ 135 (282)
T COG0421 74 HPNP-KRVLIIGGGDGGTLREVLKHL-----------------PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEII 135 (282)
T ss_pred CCCC-CeEEEECCCccHHHHHHHhcC-----------------CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEE
Confidence 3444 699999999999999999986 45899999999999999999987554 114789999
Q ss_pred EcccccCC-CCCCCeeEEEeccccccccCH------HHHHHHHHhhccCCcEEEEE
Q 036563 158 EGDAEALC-FEDSTMDGYTIAFGIRNVTHI------EKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 158 ~~d~~~~~-~~~~~~D~v~~~~~l~~~~~~------~~~l~~~~~~L~pgG~l~i~ 206 (288)
.+|..++- -..++||+|++...=. . .+ ..+++.+++.|+++|.++..
T Consensus 136 i~Dg~~~v~~~~~~fDvIi~D~tdp-~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 136 IDDGVEFLRDCEEKFDVIIVDSTDP-V-GPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred eccHHHHHHhCCCcCCEEEEcCCCC-C-CcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 99987652 2233799999866532 1 22 77999999999999999975
No 203
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=6.3e-06 Score=75.16 Aligned_cols=122 Identities=20% Similarity=0.300 Sum_probs=93.3
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
......+.+.++.+|||+++++|.=+.++++.... .+..|+++|.++.-+...++++...|+.
T Consensus 146 ~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~---------------~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-- 208 (355)
T COG0144 146 QLPALVLDPKPGERVLDLCAAPGGKTTHLAELMEN---------------EGAIVVAVDVSPKRLKRLRENLKRLGVR-- 208 (355)
T ss_pred HHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCC---------------CCceEEEEcCCHHHHHHHHHHHHHcCCC--
Confidence 34456778899999999999999999999998741 1345699999999999999999999885
Q ss_pred ceEEEEcccccCC---CCCCCeeEEEeccccccc------cCH----------------HHHHHHHHhhccCCcEEEEEe
Q 036563 153 SLLWVEGDAEALC---FEDSTMDGYTIAFGIRNV------THI----------------EKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 153 ~v~~~~~d~~~~~---~~~~~~D~v~~~~~l~~~------~~~----------------~~~l~~~~~~L~pgG~l~i~~ 207 (288)
++.....|....+ ...++||.|++....... ++. .++|....++|||||.++...
T Consensus 209 nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST 288 (355)
T COG0144 209 NVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST 288 (355)
T ss_pred ceEEEecccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 6888888876543 222359999985442211 111 457999999999999999877
Q ss_pred ccCC
Q 036563 208 LSHV 211 (288)
Q Consensus 208 ~~~~ 211 (288)
++..
T Consensus 289 CS~~ 292 (355)
T COG0144 289 CSLT 292 (355)
T ss_pred cCCc
Confidence 7654
No 204
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.45 E-value=1.7e-06 Score=74.14 Aligned_cols=88 Identities=23% Similarity=0.317 Sum_probs=74.1
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
..+.+++..+..++..|||+|.|||.++..+++.. .+|+++++++.|+....++...-...
T Consensus 46 v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~-------------------kkVvA~E~Dprmvael~krv~gtp~~ 106 (315)
T KOG0820|consen 46 VIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAG-------------------KKVVAVEIDPRMVAELEKRVQGTPKS 106 (315)
T ss_pred HHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhc-------------------CeEEEEecCcHHHHHHHHHhcCCCcc
Confidence 34567777888889999999999999999999985 89999999999999999988665544
Q ss_pred CCceEEEEcccccCCCCCCCeeEEEecccc
Q 036563 151 DKSLLWVEGDAEALCFEDSTMDGYTIAFGI 180 (288)
Q Consensus 151 ~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l 180 (288)
...+++.+|+.+.+++ .||.|+++...
T Consensus 107 -~kLqV~~gD~lK~d~P--~fd~cVsNlPy 133 (315)
T KOG0820|consen 107 -GKLQVLHGDFLKTDLP--RFDGCVSNLPY 133 (315)
T ss_pred -ceeeEEecccccCCCc--ccceeeccCCc
Confidence 6899999999887655 59999986653
No 205
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.43 E-value=4.1e-06 Score=68.63 Aligned_cols=119 Identities=18% Similarity=0.169 Sum_probs=90.3
Q ss_pred HHHHHHHHhhcCC--CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh
Q 036563 69 RLWKDRLVSKLNP--FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE 146 (288)
Q Consensus 69 ~~~~~~~~~~l~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 146 (288)
.+.++.+...+.. -.+.++||+-+|+|.++..++.+. ...++.+|.+.......+++...
T Consensus 27 drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG------------------A~~~~~vE~~~~a~~~l~~N~~~ 88 (187)
T COG0742 27 DRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRG------------------AARVVFVEKDRKAVKILKENLKA 88 (187)
T ss_pred hHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCC------------------CceEEEEecCHHHHHHHHHHHHH
Confidence 4556667777765 578899999999999999999885 37899999999999999999988
Q ss_pred cCCCCCceEEEEcccccC-CCCC--CCeeEEEecccccc-ccCHHHHHHH--HHhhccCCcEEEEE
Q 036563 147 RGYPDKSLLWVEGDAEAL-CFED--STMDGYTIAFGIRN-VTHIEKALAE--AYRVLKRGGRFLCL 206 (288)
Q Consensus 147 ~~~~~~~v~~~~~d~~~~-~~~~--~~~D~v~~~~~l~~-~~~~~~~l~~--~~~~L~pgG~l~i~ 206 (288)
.++. .+.+++..|+... .... +.||+|++...++. +-+....+.. -...|+|+|.+++-
T Consensus 89 l~~~-~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E 153 (187)
T COG0742 89 LGLE-GEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVE 153 (187)
T ss_pred hCCc-cceEEEeecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEE
Confidence 8766 6788888887743 1122 24999999888762 2222333333 45779999999863
No 206
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.43 E-value=4.4e-06 Score=76.52 Aligned_cols=106 Identities=8% Similarity=0.091 Sum_probs=75.0
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+.+.+... +.++||++||+|.++..+++.. .+++++|+++.+++.+++++...++.
T Consensus 197 ~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~-------------------~~v~~vE~~~~ai~~a~~N~~~~~~~-- 254 (362)
T PRK05031 197 EWALDATKGS-KGDLLELYCGNGNFTLALARNF-------------------RRVLATEISKPSVAAAQYNIAANGID-- 254 (362)
T ss_pred HHHHHHhhcC-CCeEEEEeccccHHHHHHHhhC-------------------CEEEEEECCHHHHHHHHHHHHHhCCC--
Confidence 3444444332 3579999999999999888764 68999999999999999998887763
Q ss_pred ceEEEEcccccC-C-CC--------------CCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 153 SLLWVEGDAEAL-C-FE--------------DSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 153 ~v~~~~~d~~~~-~-~~--------------~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
+++++.+|+.+. . +. ..+||+|++...-... ...+++.+.+ |++.+++
T Consensus 255 ~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~--~~~~l~~l~~---~~~ivyv 318 (362)
T PRK05031 255 NVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGL--DDETLKLVQA---YERILYI 318 (362)
T ss_pred cEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCC--cHHHHHHHHc---cCCEEEE
Confidence 899999998663 1 10 1258999987763221 2445555544 5665554
No 207
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.42 E-value=2.7e-06 Score=77.57 Aligned_cols=107 Identities=7% Similarity=0.015 Sum_probs=75.1
Q ss_pred HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 72 ~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
.+.+.+.+...+ .+|||++||+|.++..+++.. .+++++|+++.+++.+++++...++.
T Consensus 187 ~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~-------------------~~v~~vE~~~~av~~a~~n~~~~~~~- 245 (353)
T TIGR02143 187 LEWACEVTQGSK-GDLLELYCGNGNFSLALAQNF-------------------RRVLATEIAKPSVNAAQYNIAANNID- 245 (353)
T ss_pred HHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhC-------------------CEEEEEECCHHHHHHHHHHHHHcCCC-
Confidence 344445544323 479999999999999888774 68999999999999999999888764
Q ss_pred CceEEEEcccccCCC-----------C-----CCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 152 KSLLWVEGDAEALCF-----------E-----DSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~-----------~-----~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
+++++.+|+.+... . ...||+|++...=.. -...+++.+.+ |++.+++
T Consensus 246 -~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G--~~~~~l~~l~~---~~~ivYv 309 (353)
T TIGR02143 246 -NVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAG--LDPDTCKLVQA---YERILYI 309 (353)
T ss_pred -cEEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCC--CcHHHHHHHHc---CCcEEEE
Confidence 79999999876321 0 113799998666111 12445555543 6666664
No 208
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.42 E-value=1.4e-05 Score=67.07 Aligned_cols=136 Identities=16% Similarity=0.142 Sum_probs=92.2
Q ss_pred EEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCC
Q 036563 87 HLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCF 166 (288)
Q Consensus 87 vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~ 166 (288)
|.||||--|.+...+++.. ...+++++|+++..++.|++.+...++. .++++..+|....-.
T Consensus 1 vaDIGtDHgyLpi~L~~~~-----------------~~~~~ia~DI~~gpL~~A~~~i~~~~l~-~~i~~rlgdGL~~l~ 62 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNG-----------------KAPKAIAVDINPGPLEKAKENIAKYGLE-DRIEVRLGDGLEVLK 62 (205)
T ss_dssp EEEET-STTHHHHHHHHTT-----------------SEEEEEEEESSHHHHHHHHHHHHHTT-T-TTEEEEE-SGGGG--
T ss_pred CceeccchhHHHHHHHhcC-----------------CCCEEEEEeCCHHHHHHHHHHHHHcCCc-ccEEEEECCcccccC
Confidence 6899999999999999986 3468999999999999999999999887 789999999654322
Q ss_pred CCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhH
Q 036563 167 EDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLV 246 (288)
Q Consensus 167 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (288)
+.+..|.|+....= -.-...+|.+....++....|++...
T Consensus 63 ~~e~~d~ivIAGMG--G~lI~~ILe~~~~~~~~~~~lILqP~-------------------------------------- 102 (205)
T PF04816_consen 63 PGEDVDTIVIAGMG--GELIIEILEAGPEKLSSAKRLILQPN-------------------------------------- 102 (205)
T ss_dssp GGG---EEEEEEE---HHHHHHHHHHTGGGGTT--EEEEEES--------------------------------------
T ss_pred CCCCCCEEEEecCC--HHHHHHHHHhhHHHhccCCeEEEeCC--------------------------------------
Confidence 22337888765541 11246677777777766667765321
Q ss_pred HHHhcCCChHHHHHHHHHcCCcEEEEEEeeC--CeeEEEEee
Q 036563 247 ESVRRFPPQEKFAAMISDAGFQKVEYENLVG--GVVAIHSGL 286 (288)
Q Consensus 247 ~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~--~~~~~~~~~ 286 (288)
.....++.+|.+.||.+++-.-... -++-+..+.
T Consensus 103 ------~~~~~LR~~L~~~gf~I~~E~lv~e~~~~YeIi~~~ 138 (205)
T PF04816_consen 103 ------THAYELRRWLYENGFEIIDEDLVEENGRFYEIIVAE 138 (205)
T ss_dssp ------S-HHHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEE
T ss_pred ------CChHHHHHHHHHCCCEEEEeEEEeECCEEEEEEEEE
Confidence 1457889999999999887665433 344444443
No 209
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.41 E-value=9.1e-07 Score=78.19 Aligned_cols=89 Identities=22% Similarity=0.365 Sum_probs=72.6
Q ss_pred HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 72 ~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
.+++++.+...++..+||++||.|..+..+++..+ +.++|+|+|.++.+++.+++++.. .
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~----------------~~g~VigiD~D~~al~~ak~~L~~--~-- 67 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLG----------------PKGRLIAIDRDPDAIAAAKDRLKP--F-- 67 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCC----------------CCCEEEEEcCCHHHHHHHHHhhcc--C--
Confidence 35677888777888999999999999999999873 468999999999999999988755 1
Q ss_pred CceEEEEcccccCC--CCC--CCeeEEEecccc
Q 036563 152 KSLLWVEGDAEALC--FED--STMDGYTIAFGI 180 (288)
Q Consensus 152 ~~v~~~~~d~~~~~--~~~--~~~D~v~~~~~l 180 (288)
.++.++.+|+.++. .+. .++|.|++...+
T Consensus 68 ~ri~~i~~~f~~l~~~l~~~~~~vDgIl~DLGv 100 (296)
T PRK00050 68 GRFTLVHGNFSNLKEVLAEGLGKVDGILLDLGV 100 (296)
T ss_pred CcEEEEeCCHHHHHHHHHcCCCccCEEEECCCc
Confidence 58999999988762 111 279999987653
No 210
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=2e-06 Score=74.21 Aligned_cols=91 Identities=21% Similarity=0.269 Sum_probs=75.4
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc
Q 036563 68 HRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER 147 (288)
Q Consensus 68 ~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 147 (288)
+....+.+++.....++..|||||+|.|.++..+++.. .+++++++++.+++..++.....
T Consensus 15 d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~-------------------~~v~aiEiD~~l~~~L~~~~~~~ 75 (259)
T COG0030 15 DKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERA-------------------ARVTAIEIDRRLAEVLKERFAPY 75 (259)
T ss_pred CHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc-------------------CeEEEEEeCHHHHHHHHHhcccc
Confidence 34456778888888888899999999999999999985 78999999999999998887633
Q ss_pred CCCCCceEEEEcccccCCCCCC-CeeEEEeccccc
Q 036563 148 GYPDKSLLWVEGDAEALCFEDS-TMDGYTIAFGIR 181 (288)
Q Consensus 148 ~~~~~~v~~~~~d~~~~~~~~~-~~D~v~~~~~l~ 181 (288)
.+++++.+|+.+.+++.- .++.|++|...+
T Consensus 76 ----~n~~vi~~DaLk~d~~~l~~~~~vVaNlPY~ 106 (259)
T COG0030 76 ----DNLTVINGDALKFDFPSLAQPYKVVANLPYN 106 (259)
T ss_pred ----cceEEEeCchhcCcchhhcCCCEEEEcCCCc
Confidence 689999999998877643 578888877643
No 211
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.40 E-value=4.5e-06 Score=69.14 Aligned_cols=119 Identities=19% Similarity=0.282 Sum_probs=88.4
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC-CCceEEEEcc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP-DKSLLWVEGD 160 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~v~~~~~d 160 (288)
.++.+||+||-|-|.....+.+.- -.+-+.++..|..++..+.. ++. +.||.+..+-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~------------------p~~H~IiE~hp~V~krmr~~----gw~ek~nViil~g~ 157 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAP------------------PDEHWIIEAHPDVLKRMRDW----GWREKENVIILEGR 157 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcC------------------CcceEEEecCHHHHHHHHhc----ccccccceEEEecc
Confidence 568899999999999988887763 36667889999888766554 332 3678887776
Q ss_pred cccC--CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHH
Q 036563 161 AEAL--CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDY 222 (288)
Q Consensus 161 ~~~~--~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~ 222 (288)
-++. .++++.||-|+...--.+..|...+.+.+.++|||+|++-.......++..+...+..
T Consensus 158 WeDvl~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~~~~~~~~~vy~~ 221 (271)
T KOG1709|consen 158 WEDVLNTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGLGADNLMFYDVYKI 221 (271)
T ss_pred hHhhhccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEecCcccchhhhhhhhhe
Confidence 5553 4678889999876655666788889999999999999998754444455555544443
No 212
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.40 E-value=3.2e-06 Score=73.26 Aligned_cols=108 Identities=19% Similarity=0.210 Sum_probs=80.4
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC--CCCCceEEEEcc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG--YPDKSLLWVEGD 160 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~v~~~~~d 160 (288)
.+.+||=||.|.|..+..+++.. +..+++++|+++.+++.+++.+.... +.+++++++.+|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~-----------------~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~D 138 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP-----------------PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGD 138 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST-----------------T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEEST
T ss_pred CcCceEEEcCCChhhhhhhhhcC-----------------CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhh
Confidence 46799999999999999998774 35799999999999999999876432 235799999999
Q ss_pred cccC-CCCCC-CeeEEEeccccccccC----HHHHHHHHHhhccCCcEEEEEe
Q 036563 161 AEAL-CFEDS-TMDGYTIAFGIRNVTH----IEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 161 ~~~~-~~~~~-~~D~v~~~~~l~~~~~----~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
+... .-..+ +||+|+....-...+. ...+++.+++.|+|||.+++..
T Consensus 139 g~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 139 GRKFLKETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp HHHHHHTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred hHHHHHhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 8764 22233 8999998554321111 2678999999999999998754
No 213
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.40 E-value=1.7e-07 Score=76.99 Aligned_cols=93 Identities=22% Similarity=0.268 Sum_probs=72.1
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
.+.++||+|+|.|.++..++..+ .+|++.+.|..|..+.+++- + ++--. .+
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~f-------------------eevyATElS~tMr~rL~kk~----y---nVl~~-~e-- 162 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTF-------------------EEVYATELSWTMRDRLKKKN----Y---NVLTE-IE-- 162 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchH-------------------HHHHHHHhhHHHHHHHhhcC----C---ceeee-hh--
Confidence 34789999999999999998887 57899999999988776541 1 22111 11
Q ss_pred cCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccC-CcEEEE
Q 036563 163 ALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKR-GGRFLC 205 (288)
Q Consensus 163 ~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~p-gG~l~i 205 (288)
....+-++|+|.|.+.+....++-+.|+.++.+|+| +|.+++
T Consensus 163 -w~~t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 163 -WLQTDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred -hhhcCceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEE
Confidence 111234699999999998888999999999999999 888775
No 214
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.40 E-value=1.4e-05 Score=69.73 Aligned_cols=106 Identities=13% Similarity=0.202 Sum_probs=66.3
Q ss_pred CCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhh-hcCCCCCceEEEEccc
Q 036563 84 GMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRAL-ERGYPDKSLLWVEGDA 161 (288)
Q Consensus 84 ~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~-~~~~~~~~v~~~~~d~ 161 (288)
+.+|+=||||+ -..+..+++.+. ++..++++|+++.+.+.+++-.. ..++. .++.+..+|.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~----------------~~~~v~~iD~d~~A~~~a~~lv~~~~~L~-~~m~f~~~d~ 183 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHG----------------PGARVHNIDIDPEANELARRLVASDLGLS-KRMSFITADV 183 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HT----------------T--EEEEEESSHHHHHHHHHHHH---HH--SSEEEEES-G
T ss_pred cceEEEEcCCCcchHHHHHHHHhC----------------CCCeEEEEeCCHHHHHHHHHHHhhccccc-CCeEEEecch
Confidence 45999999997 455555665553 45789999999999999988776 33444 6899999998
Q ss_pred ccCCCCCCCeeEEEeccccc-cccCHHHHHHHHHhhccCCcEEEEE
Q 036563 162 EALCFEDSTMDGYTIAFGIR-NVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~-~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
......-..||+|+...... .-.+..++|.++.+.++||..+++-
T Consensus 184 ~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 184 LDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp GGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 77654445799998766554 2236788999999999999999863
No 215
>PRK04148 hypothetical protein; Provisional
Probab=98.39 E-value=7.3e-06 Score=63.73 Aligned_cols=103 Identities=15% Similarity=0.042 Sum_probs=70.2
Q ss_pred HHHHhhcCCCCCCeEEEecCCccH-HHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGD-VAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
+.+.+.+...++.+|||||||+|. ++..+.+. +.+|+++|+++..++.+++.
T Consensus 6 ~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~-------------------G~~ViaIDi~~~aV~~a~~~-------- 58 (134)
T PRK04148 6 EFIAENYEKGKNKKIVELGIGFYFKVAKKLKES-------------------GFDVIVIDINEKAVEKAKKL-------- 58 (134)
T ss_pred HHHHHhcccccCCEEEEEEecCCHHHHHHHHHC-------------------CCEEEEEECCHHHHHHHHHh--------
Confidence 445566655567899999999996 77766654 48999999999988877664
Q ss_pred CceEEEEcccccCCCC-CCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 152 KSLLWVEGDAEALCFE-DSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~-~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.+.++.+|+.+..+. -..+|+|.+... .++....+.++.+.+ |.-+++..+
T Consensus 59 -~~~~v~dDlf~p~~~~y~~a~liysirp---p~el~~~~~~la~~~--~~~~~i~~l 110 (134)
T PRK04148 59 -GLNAFVDDLFNPNLEIYKNAKLIYSIRP---PRDLQPFILELAKKI--NVPLIIKPL 110 (134)
T ss_pred -CCeEEECcCCCCCHHHHhcCCEEEEeCC---CHHHHHHHHHHHHHc--CCCEEEEcC
Confidence 467899998776432 245899986443 234455555555533 455665443
No 216
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.37 E-value=3e-07 Score=85.10 Aligned_cols=109 Identities=21% Similarity=0.261 Sum_probs=72.3
Q ss_pred HHHHHHHhhcCC--CCC--CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEE---EeCChhHHHHHHH
Q 036563 70 LWKDRLVSKLNP--FPG--MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYV---CDINPNMLNVGKK 142 (288)
Q Consensus 70 ~~~~~~~~~l~~--~~~--~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~D~s~~~~~~a~~ 142 (288)
.+.+.+.+.++. ..+ -.+||+|||+|.++..++++. -.... -|..+..++.|.+
T Consensus 100 ~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~-------------------V~t~s~a~~d~~~~qvqfale 160 (506)
T PF03141_consen 100 HYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERN-------------------VTTMSFAPNDEHEAQVQFALE 160 (506)
T ss_pred HHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCC-------------------ceEEEcccccCCchhhhhhhh
Confidence 455566666654 222 258999999999999998873 11111 2334445555443
Q ss_pred HhhhcCCCCCceEEEEc--ccccCCCCCCCeeEEEecccccccc-CHHHHHHHHHhhccCCcEEEEE
Q 036563 143 RALERGYPDKSLLWVEG--DAEALCFEDSTMDGYTIAFGIRNVT-HIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 143 ~~~~~~~~~~~v~~~~~--d~~~~~~~~~~~D~v~~~~~l~~~~-~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+ |++ .+.+ .-..+|+++.+||+|.|..++..+. +-...|-++.|+|+|||+++..
T Consensus 161 R----Gvp-----a~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S 218 (506)
T PF03141_consen 161 R----GVP-----AMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLS 218 (506)
T ss_pred c----Ccc-----hhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEec
Confidence 3 332 1222 2356899999999999999876553 3345788999999999999963
No 217
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.34 E-value=7.7e-06 Score=70.76 Aligned_cols=127 Identities=16% Similarity=0.154 Sum_probs=76.7
Q ss_pred HHHHHHHHhhcCCCCC-CeEEEecCCc--cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhh
Q 036563 69 RLWKDRLVSKLNPFPG-MKHLDVAGGT--GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRAL 145 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~-~~vLDiG~G~--G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~ 145 (288)
+.+....++.+....| ...||||||- -.....+++... |.++|..+|.+|-.+..++..+.
T Consensus 53 R~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~----------------P~aRVVYVD~DPvv~ah~ralL~ 116 (267)
T PF04672_consen 53 RAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVA----------------PDARVVYVDNDPVVLAHARALLA 116 (267)
T ss_dssp HHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-----------------TT-EEEEEESSHHHHHCCHHHHT
T ss_pred HHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhC----------------CCceEEEECCCchHHHHHHhhhc
Confidence 4444455555544423 3699999993 334444555554 78999999999999999988876
Q ss_pred hcCCCCCceEEEEcccccCC----------CCC-CCeeEEEecccccccc---CHHHHHHHHHhhccCCcEEEEEeccCC
Q 036563 146 ERGYPDKSLLWVEGDAEALC----------FED-STMDGYTIAFGIRNVT---HIEKALAEAYRVLKRGGRFLCLELSHV 211 (288)
Q Consensus 146 ~~~~~~~~v~~~~~d~~~~~----------~~~-~~~D~v~~~~~l~~~~---~~~~~l~~~~~~L~pgG~l~i~~~~~~ 211 (288)
...- ....++.+|+.+.. +.+ +..=.+++..++|+++ ++..++..++..|.||++|++...+..
T Consensus 117 ~~~~--g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 117 DNPR--GRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp T-TT--SEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CCCC--ccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 6521 13889999987642 111 1223567778888885 478899999999999999998777664
Q ss_pred Ch
Q 036563 212 DI 213 (288)
Q Consensus 212 ~~ 213 (288)
..
T Consensus 195 ~~ 196 (267)
T PF04672_consen 195 GA 196 (267)
T ss_dssp TS
T ss_pred CC
Confidence 33
No 218
>PRK00536 speE spermidine synthase; Provisional
Probab=98.34 E-value=4.9e-06 Score=72.30 Aligned_cols=98 Identities=13% Similarity=0.032 Sum_probs=76.8
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc--CCCCCceEEEEc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER--GYPDKSLLWVEG 159 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~v~~~~~ 159 (288)
+.+.+||=||.|.|..+..++++ + .+++.+|+++.+++.+++.+... ++.+++++++..
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh------------------~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~ 131 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY------------------D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ 131 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc------------------C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh
Confidence 44679999999999999999998 3 49999999999999999965543 345678888752
Q ss_pred ccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 160 DAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 160 d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+. ....++||+|++... ....+.+.+++.|+|||.++..
T Consensus 132 -~~--~~~~~~fDVIIvDs~-----~~~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 132 -LL--DLDIKKYDLIICLQE-----PDIHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred -hh--hccCCcCCEEEEcCC-----CChHHHHHHHHhcCCCcEEEEC
Confidence 21 112367999998743 3367789999999999999864
No 219
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.34 E-value=3.5e-06 Score=70.75 Aligned_cols=123 Identities=20% Similarity=0.229 Sum_probs=73.6
Q ss_pred hhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHH-
Q 036563 65 GGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKR- 143 (288)
Q Consensus 65 ~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~- 143 (288)
++........+++.+...++...+|+|||.|.....++-..+ -.+.+|+|+.+...+.++..
T Consensus 24 GEi~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~-----------------~~~~~GIEi~~~~~~~a~~~~ 86 (205)
T PF08123_consen 24 GEISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTG-----------------CKKSVGIEILPELHDLAEELL 86 (205)
T ss_dssp GGCHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH-------------------SEEEEEE-SHHHHHHHHHHH
T ss_pred eecCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcC-----------------CcEEEEEEechHHHHHHHHHH
Confidence 333333445566778888889999999999999888877763 35699999999877666543
Q ss_pred ------hhhcCCCCCceEEEEcccccCCCC---CCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 144 ------ALERGYPDKSLLWVEGDAEALCFE---DSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 144 ------~~~~~~~~~~v~~~~~d~~~~~~~---~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
....+....++.+..+|+.+.++. -...|+|++++..- -++....|.+....||+|.+++.
T Consensus 87 ~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 87 EELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp HHHHHHHHHCTB---EEEEECS-TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEE
T ss_pred HHHHHHHHHhhcccccceeeccCccccHhHhhhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEEE
Confidence 223333335778888887654311 12479999988642 23455667888888999988874
No 220
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.29 E-value=1.1e-05 Score=71.40 Aligned_cols=120 Identities=25% Similarity=0.351 Sum_probs=92.7
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
......+.+.++.+|||+++++|.-+.++++... ..+.+++.|+++..+...+.++...|..
T Consensus 75 ~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~----------------~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-- 136 (283)
T PF01189_consen 75 QLVALALDPQPGERVLDMCAAPGGKTTHLAELMG----------------NKGEIVANDISPKRLKRLKENLKRLGVF-- 136 (283)
T ss_dssp HHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTT----------------TTSEEEEEESSHHHHHHHHHHHHHTT-S--
T ss_pred ccccccccccccccccccccCCCCceeeeeeccc----------------chhHHHHhccCHHHHHHHHHHHHhcCCc--
Confidence 3445567788899999999999999999999875 4689999999999999999999988874
Q ss_pred ceEEEEcccccC--CCCCCCeeEEEeccc------cccccCH----------------HHHHHHHHhhc----cCCcEEE
Q 036563 153 SLLWVEGDAEAL--CFEDSTMDGYTIAFG------IRNVTHI----------------EKALAEAYRVL----KRGGRFL 204 (288)
Q Consensus 153 ~v~~~~~d~~~~--~~~~~~~D~v~~~~~------l~~~~~~----------------~~~l~~~~~~L----~pgG~l~ 204 (288)
++.....|.... ......||.|++... +..-++. .++|+++.+.+ +|||+++
T Consensus 137 ~v~~~~~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lv 216 (283)
T PF01189_consen 137 NVIVINADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLV 216 (283)
T ss_dssp SEEEEESHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEE
T ss_pred eEEEEeeccccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEE
Confidence 788887887665 123346999998443 2222221 45799999999 9999999
Q ss_pred EEeccC
Q 036563 205 CLELSH 210 (288)
Q Consensus 205 i~~~~~ 210 (288)
....+.
T Consensus 217 YsTCS~ 222 (283)
T PF01189_consen 217 YSTCSL 222 (283)
T ss_dssp EEESHH
T ss_pred EEeccH
Confidence 876654
No 221
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=1.3e-05 Score=66.73 Aligned_cols=106 Identities=25% Similarity=0.322 Sum_probs=77.4
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|+|+||.+|.++..+++..+ +...|+++|+.|-. .. +++.++++|+
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~----------------~~~~ivavDi~p~~-----------~~--~~V~~iq~d~ 94 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLG----------------AGGKIVAVDILPMK-----------PI--PGVIFLQGDI 94 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhC----------------CCCcEEEEECcccc-----------cC--CCceEEeeec
Confidence 5678999999999999999999986 45669999997732 11 5799999998
Q ss_pred ccCC--------CCCCCeeEEEecccc-----ccccC------HHHHHHHHHhhccCCcEEEEEeccCCChHHH
Q 036563 162 EALC--------FEDSTMDGYTIAFGI-----RNVTH------IEKALAEAYRVLKRGGRFLCLELSHVDIPVF 216 (288)
Q Consensus 162 ~~~~--------~~~~~~D~v~~~~~l-----~~~~~------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~ 216 (288)
..-. +...++|+|++..+- +..++ ...++.-+..+|+|||.+++-.+.......+
T Consensus 95 ~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~ 168 (205)
T COG0293 95 TDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDL 168 (205)
T ss_pred cCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHH
Confidence 7642 444568999976652 11111 1446777888999999999877766544433
No 222
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.26 E-value=1.3e-06 Score=79.34 Aligned_cols=110 Identities=31% Similarity=0.332 Sum_probs=93.0
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcc
Q 036563 81 PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGD 160 (288)
Q Consensus 81 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d 160 (288)
..++.+++|+|||-|.....+.... .+.++++|.++..+..+........+. .+-.++..|
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~------------------~~~~~Gl~~n~~e~~~~~~~~~~~~l~-~k~~~~~~~ 168 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFK------------------KAGVVGLDNNAYEAFRANELAKKAYLD-NKCNFVVAD 168 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhc------------------cCCccCCCcCHHHHHHHHHHHHHHHhh-hhcceehhh
Confidence 3456689999999999998887763 488999999998888887776666555 344458889
Q ss_pred cccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEecc
Q 036563 161 AEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 161 ~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
+.+.++++.+||.+.+..+..|.++...+++++.++++|||++++-++.
T Consensus 169 ~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 169 FGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred hhcCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHH
Confidence 8888999999999999999999999999999999999999999975553
No 223
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=4.2e-05 Score=62.97 Aligned_cols=106 Identities=21% Similarity=0.184 Sum_probs=81.2
Q ss_pred hcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 78 KLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
.++..++.+||-+|+.+|....++.+-. +.+.+++++.|+.+.......+... +|+-.+
T Consensus 71 ~~pi~~g~~VLYLGAasGTTvSHVSDIv-----------------~~G~iYaVEfs~R~~reLl~~a~~R----~Ni~PI 129 (231)
T COG1889 71 NFPIKEGSKVLYLGAASGTTVSHVSDIV-----------------GEGRIYAVEFSPRPMRELLDVAEKR----PNIIPI 129 (231)
T ss_pred cCCcCCCCEEEEeeccCCCcHhHHHhcc-----------------CCCcEEEEEecchhHHHHHHHHHhC----CCceee
Confidence 3456789999999999999999999987 3588999999998877666665554 689999
Q ss_pred EcccccCC---CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 158 EGDAEALC---FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 158 ~~d~~~~~---~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
..|+.... .--+..|+|+..-+- .+...-+..++...|++||+++++
T Consensus 130 L~DA~~P~~Y~~~Ve~VDviy~DVAQ--p~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 130 LEDARKPEKYRHLVEKVDVIYQDVAQ--PNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred ecccCCcHHhhhhcccccEEEEecCC--chHHHHHHHHHHHhcccCCeEEEE
Confidence 99987642 233569999865432 122445678999999999987763
No 224
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.22 E-value=1.2e-06 Score=75.63 Aligned_cols=95 Identities=28% Similarity=0.327 Sum_probs=75.5
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
.+..++|+|||.|..... .|...+.++|.+...+..++.. +.......|+.
T Consensus 45 ~gsv~~d~gCGngky~~~---------------------~p~~~~ig~D~c~~l~~~ak~~--------~~~~~~~ad~l 95 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGV---------------------NPLCLIIGCDLCTGLLGGAKRS--------GGDNVCRADAL 95 (293)
T ss_pred CcceeeecccCCcccCcC---------------------CCcceeeecchhhhhccccccC--------CCceeehhhhh
Confidence 367899999999876411 0456789999988777666542 12267889999
Q ss_pred cCCCCCCCeeEEEeccccccccC---HHHHHHHHHhhccCCcEEEEE
Q 036563 163 ALCFEDSTMDGYTIAFGIRNVTH---IEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 163 ~~~~~~~~~D~v~~~~~l~~~~~---~~~~l~~~~~~L~pgG~l~i~ 206 (288)
++|+.+.+||.++...++||+.. ...+++++.+.|+|||..++-
T Consensus 96 ~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 96 KLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred cCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 99999999999999999999964 467999999999999997763
No 225
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=2.4e-06 Score=66.42 Aligned_cols=83 Identities=18% Similarity=0.195 Sum_probs=67.2
Q ss_pred hcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 78 KLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
-.+.-.+++++|+|||.|-++...... ....+.|+|+++++++.+.++..+..+ ++.+.
T Consensus 43 TygdiEgkkl~DLgcgcGmLs~a~sm~------------------~~e~vlGfDIdpeALEIf~rNaeEfEv---qidlL 101 (185)
T KOG3420|consen 43 TYGDIEGKKLKDLGCGCGMLSIAFSMP------------------KNESVLGFDIDPEALEIFTRNAEEFEV---QIDLL 101 (185)
T ss_pred hhccccCcchhhhcCchhhhHHHhhcC------------------CCceEEeeecCHHHHHHHhhchHHhhh---hhhee
Confidence 334456789999999999998554443 347899999999999999999888765 46889
Q ss_pred EcccccCCCCCCCeeEEEeccccc
Q 036563 158 EGDAEALCFEDSTMDGYTIAFGIR 181 (288)
Q Consensus 158 ~~d~~~~~~~~~~~D~v~~~~~l~ 181 (288)
++|+..+.+..+.||.++.+..+.
T Consensus 102 qcdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 102 QCDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred eeeccchhccCCeEeeEEecCCCC
Confidence 999888877778899999988765
No 226
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.22 E-value=4.8e-06 Score=68.62 Aligned_cols=101 Identities=19% Similarity=0.260 Sum_probs=64.6
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.++||+||++|.++..+++..+ +..+++++|+.+.. .. +++..+++|+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~----------------~~~~v~avDl~~~~-----------~~--~~~~~i~~d~~ 73 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGG----------------PAGRVVAVDLGPMD-----------PL--QNVSFIQGDIT 73 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTT----------------TEEEEEEEESSSTG-----------S---TTEEBTTGGGE
T ss_pred cccEEEEcCCcccceeeeeeeccc----------------ccceEEEEeccccc-----------cc--cceeeeecccc
Confidence 457999999999999999999862 35899999998761 01 34556666654
Q ss_pred cCC--------C--CCCCeeEEEeccccccccC-----------HHHHHHHHHhhccCCcEEEEEeccCCC
Q 036563 163 ALC--------F--EDSTMDGYTIAFGIRNVTH-----------IEKALAEAYRVLKRGGRFLCLELSHVD 212 (288)
Q Consensus 163 ~~~--------~--~~~~~D~v~~~~~l~~~~~-----------~~~~l~~~~~~L~pgG~l~i~~~~~~~ 212 (288)
+.. + ....+|+|++..+.....+ ....+.-+...|+|||.+++--+..+.
T Consensus 74 ~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~ 144 (181)
T PF01728_consen 74 NPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPE 144 (181)
T ss_dssp EEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTT
T ss_pred hhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCcc
Confidence 321 1 1258999999884332211 133456666889999999876665443
No 227
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.21 E-value=0.00016 Score=56.21 Aligned_cols=105 Identities=31% Similarity=0.381 Sum_probs=72.6
Q ss_pred EEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc--C
Q 036563 87 HLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA--L 164 (288)
Q Consensus 87 vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~--~ 164 (288)
++|+|||+|... .+..... ....++++|+++.++..+...... ... ..+.+...|... .
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~----------------~~~~~~~~d~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~ 112 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGG----------------RGAYVVGVDLSPEMLALARARAEG-AGL-GLVDFVVADALGGVL 112 (257)
T ss_pred eEEecCCcCHHH-HHHHhCC----------------CCceEEEEeCCHHHHHHHHhhhhh-cCC-CceEEEEeccccCCC
Confidence 999999999987 3333321 113788899999999885444322 111 116778788765 5
Q ss_pred CCCC-CCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCC
Q 036563 165 CFED-STMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHV 211 (288)
Q Consensus 165 ~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 211 (288)
++.. ..+|++ +.....+..+....+.++.+.++|+|.+++......
T Consensus 113 ~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 113 PFEDSASFDLV-ISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred CCCCCCceeEE-eeeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 6665 489999 555444433478899999999999999998766544
No 228
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.17 E-value=2.3e-05 Score=70.44 Aligned_cols=112 Identities=22% Similarity=0.285 Sum_probs=91.6
Q ss_pred HHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 74 RLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 74 ~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
.+++.... |.+|+|.=||-|.++..++.... .+|+++|+||.+++..++++.-+++. ..
T Consensus 181 Rva~~v~~--GE~V~DmFAGVGpfsi~~Ak~g~------------------~~V~A~diNP~A~~~L~eNi~LN~v~-~~ 239 (341)
T COG2520 181 RVAELVKE--GETVLDMFAGVGPFSIPIAKKGR------------------PKVYAIDINPDAVEYLKENIRLNKVE-GR 239 (341)
T ss_pred HHHhhhcC--CCEEEEccCCcccchhhhhhcCC------------------ceEEEEecCHHHHHHHHHHHHhcCcc-ce
Confidence 34444443 78999999999999999999852 44999999999999999999988887 56
Q ss_pred eEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccC
Q 036563 154 LLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 154 v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
+..+++|+......-..+|-|+++.. .+...++....+.+++||.+..-++.+
T Consensus 240 v~~i~gD~rev~~~~~~aDrIim~~p----~~a~~fl~~A~~~~k~~g~iHyy~~~~ 292 (341)
T COG2520 240 VEPILGDAREVAPELGVADRIIMGLP----KSAHEFLPLALELLKDGGIIHYYEFVP 292 (341)
T ss_pred eeEEeccHHHhhhccccCCEEEeCCC----CcchhhHHHHHHHhhcCcEEEEEeccc
Confidence 89999999888655468999997665 355678888899999999998766554
No 229
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.13 E-value=0.00016 Score=65.58 Aligned_cols=135 Identities=16% Similarity=0.095 Sum_probs=89.2
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhh-----------hhh-----hcc------cccccCCCceE
Q 036563 70 LWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKR-----------RAL-----QDV------LEDDLQEETRI 127 (288)
Q Consensus 70 ~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~-----------~~~-----~~~------~~~~~~~~~~v 127 (288)
.....|+...+..++..++|.=||+|.+.+..+........ .+. +.+ .-..+.+...+
T Consensus 178 tLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~ 257 (381)
T COG0116 178 TLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPII 257 (381)
T ss_pred HHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceE
Confidence 33456666777777778999999999999888776531000 000 000 00000111157
Q ss_pred EEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEecccccc-ccC---H----HHHHHHHHhhccC
Q 036563 128 YVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRN-VTH---I----EKALAEAYRVLKR 199 (288)
Q Consensus 128 ~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~-~~~---~----~~~l~~~~~~L~p 199 (288)
+|+|+++.+++.|+.+....++. ..+.|.++|+..+..+-+.+|+|++|....- +.+ . ..+.+.+++.++.
T Consensus 258 ~G~Did~r~i~~Ak~NA~~AGv~-d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ 336 (381)
T COG0116 258 YGSDIDPRHIEGAKANARAAGVG-DLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAG 336 (381)
T ss_pred EEecCCHHHHHHHHHHHHhcCCC-ceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcC
Confidence 89999999999999999999998 8899999999988644368999999887431 111 2 2234455566666
Q ss_pred CcEEEE
Q 036563 200 GGRFLC 205 (288)
Q Consensus 200 gG~l~i 205 (288)
.+..++
T Consensus 337 ws~~v~ 342 (381)
T COG0116 337 WSRYVF 342 (381)
T ss_pred CceEEE
Confidence 566664
No 230
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.13 E-value=4.3e-05 Score=75.92 Aligned_cols=130 Identities=15% Similarity=0.126 Sum_probs=85.4
Q ss_pred HHHHHhhcCC-CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhccccc-----------------------------cc
Q 036563 72 KDRLVSKLNP-FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLED-----------------------------DL 121 (288)
Q Consensus 72 ~~~~~~~l~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~-----------------------------~~ 121 (288)
...++..... .++..++|..||+|.+.+..+........ |..+. ..
T Consensus 178 Aaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~p----g~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~ 253 (702)
T PRK11783 178 AAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAP----GLHRERWGFSGWLGHDEALWQELLEEAQERARAGLA 253 (702)
T ss_pred HHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCC----CccccccccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence 3445544444 45678999999999999888765320000 00000 00
Q ss_pred CCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCC--CCCeeEEEeccccccc----cCHHHHHHHHHh
Q 036563 122 QEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFE--DSTMDGYTIAFGIRNV----THIEKALAEAYR 195 (288)
Q Consensus 122 ~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~D~v~~~~~l~~~----~~~~~~l~~~~~ 195 (288)
....+++|+|+++.+++.|++++...++. ..+.+.++|+.+++.+ .+.+|+|++|..+..- .+...+.+.+-+
T Consensus 254 ~~~~~i~G~Did~~av~~A~~N~~~~g~~-~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~ 332 (702)
T PRK11783 254 ELPSKFYGSDIDPRVIQAARKNARRAGVA-ELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGR 332 (702)
T ss_pred ccCceEEEEECCHHHHHHHHHHHHHcCCC-cceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHH
Confidence 12347999999999999999999999886 6789999999887543 3469999999875322 122334344444
Q ss_pred hcc---CCcEEEEE
Q 036563 196 VLK---RGGRFLCL 206 (288)
Q Consensus 196 ~L~---pgG~l~i~ 206 (288)
.++ +|+.+.++
T Consensus 333 ~lk~~~~g~~~~ll 346 (702)
T PRK11783 333 RLKQQFGGWNAALF 346 (702)
T ss_pred HHHHhCCCCeEEEE
Confidence 443 78777664
No 231
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.10 E-value=3.6e-05 Score=67.35 Aligned_cols=105 Identities=17% Similarity=0.212 Sum_probs=79.0
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc
Q 036563 68 HRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER 147 (288)
Q Consensus 68 ~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 147 (288)
++...+.+++.+...++..|||+|+|+|.++..+++.. .+++++|+++.+.+..++.....
T Consensus 15 ~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-------------------~~v~~vE~d~~~~~~L~~~~~~~ 75 (262)
T PF00398_consen 15 DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-------------------KRVIAVEIDPDLAKHLKERFASN 75 (262)
T ss_dssp HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-------------------SEEEEEESSHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-------------------CcceeecCcHhHHHHHHHHhhhc
Confidence 45566778888887788999999999999999998884 79999999999999998877633
Q ss_pred CCCCCceEEEEcccccCCCCC---CCeeEEEeccccccccCHHHHHHHHHhhcc
Q 036563 148 GYPDKSLLWVEGDAEALCFED---STMDGYTIAFGIRNVTHIEKALAEAYRVLK 198 (288)
Q Consensus 148 ~~~~~~v~~~~~d~~~~~~~~---~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~ 198 (288)
++++++.+|+..+.... +....|+++... ++ ...++.++...-+
T Consensus 76 ----~~~~vi~~D~l~~~~~~~~~~~~~~vv~NlPy-~i--s~~il~~ll~~~~ 122 (262)
T PF00398_consen 76 ----PNVEVINGDFLKWDLYDLLKNQPLLVVGNLPY-NI--SSPILRKLLELYR 122 (262)
T ss_dssp ----SSEEEEES-TTTSCGGGHCSSSEEEEEEEETG-TG--HHHHHHHHHHHGG
T ss_pred ----ccceeeecchhccccHHhhcCCceEEEEEecc-cc--hHHHHHHHhhccc
Confidence 68999999998876443 456677776654 32 2345555555333
No 232
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=6.6e-05 Score=70.01 Aligned_cols=113 Identities=17% Similarity=0.200 Sum_probs=85.7
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
+.+.+...+.+...++.++||+=||.|.++..+++.. .+|+|+|+++.+++.|++++..++
T Consensus 279 ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~-------------------~~V~gvEi~~~aV~~A~~NA~~n~ 339 (432)
T COG2265 279 EKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRV-------------------KKVHGVEISPEAVEAAQENAAANG 339 (432)
T ss_pred HHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccC-------------------CEEEEEecCHHHHHHHHHHHHHcC
Confidence 4445566677777778899999999999999999765 899999999999999999999998
Q ss_pred CCCCceEEEEcccccCCCC---CCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 149 YPDKSLLWVEGDAEALCFE---DSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~~~---~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
+. |++|..++++.+... ...+|.|+....=... ...+++.+. .++|...+++
T Consensus 340 i~--N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G~--~~~~lk~l~-~~~p~~IvYV 394 (432)
T COG2265 340 ID--NVEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAGA--DREVLKQLA-KLKPKRIVYV 394 (432)
T ss_pred CC--cEEEEeCCHHHHhhhccccCCCCEEEECCCCCCC--CHHHHHHHH-hcCCCcEEEE
Confidence 85 699999999887422 3468999875542221 124444444 3567776764
No 233
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=3.4e-06 Score=66.81 Aligned_cols=106 Identities=20% Similarity=0.104 Sum_probs=72.4
Q ss_pred CCCeEEEecCC-ccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC-CCceEEEEcc
Q 036563 83 PGMKHLDVAGG-TGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP-DKSLLWVEGD 160 (288)
Q Consensus 83 ~~~~vLDiG~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~v~~~~~d 160 (288)
.+.+|||+|.| +|..+..++... +...|...|-+...++..++....+... -.++.....+
T Consensus 29 rg~~ilelgggft~laglmia~~a-----------------~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~ 91 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKA-----------------PDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWL 91 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeec-----------------CCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHH
Confidence 45789999999 466666666555 5789999999999998888765443111 0122222222
Q ss_pred ccc--CCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 161 AEA--LCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 161 ~~~--~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
... ......+||+|++..++-.-.....+.+.++.+|+|.|.-++
T Consensus 92 ~~~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~ 138 (201)
T KOG3201|consen 92 IWGAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALL 138 (201)
T ss_pred HhhhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeE
Confidence 211 123456899999999875544567788999999999999665
No 234
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.98 E-value=8.7e-05 Score=68.02 Aligned_cols=101 Identities=15% Similarity=0.157 Sum_probs=81.1
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+.+|||+-||+|..+..++.+.+ ...+|+++|+++..++.+++++..++.. ++.+...|+..
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~----------------ga~~Vv~nD~n~~Av~~i~~N~~~N~~~--~~~v~~~Da~~ 106 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIE----------------GVREVFANDINPKAVESIKNNVEYNSVE--NIEVPNEDAAN 106 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCC----------------CCCEEEEEeCCHHHHHHHHHHHHHhCCC--cEEEEchhHHH
Confidence 35899999999999999998742 1368999999999999999999877653 68889999876
Q ss_pred CC-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 164 LC-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 164 ~~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+- .....||+|.+.. + ..+..++..+.+.++++|.+.+.
T Consensus 107 ~l~~~~~~fDvIdlDP-f---Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 107 VLRYRNRKFHVIDIDP-F---GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred HHHHhCCCCCEEEeCC-C---CCcHHHHHHHHHhcccCCEEEEE
Confidence 52 2235799999866 3 23467899999999999999875
No 235
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.97 E-value=3.6e-05 Score=70.25 Aligned_cols=88 Identities=16% Similarity=0.265 Sum_probs=62.9
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC
Q 036563 70 LWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY 149 (288)
Q Consensus 70 ~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~ 149 (288)
.+.+.+.+.++..++ +|||+-||.|.++..+++.. .+|+|+|+++++++.|++++..+++
T Consensus 184 ~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~-------------------~~V~gvE~~~~av~~A~~Na~~N~i 243 (352)
T PF05958_consen 184 KLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA-------------------KKVIGVEIVEEAVEDARENAKLNGI 243 (352)
T ss_dssp HHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCS-------------------SEEEEEES-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhC-------------------CeEEEeeCCHHHHHHHHHHHHHcCC
Confidence 344556677776655 89999999999999999886 7999999999999999999999888
Q ss_pred CCCceEEEEcccccCC----------------CCCCCeeEEEeccc
Q 036563 150 PDKSLLWVEGDAEALC----------------FEDSTMDGYTIAFG 179 (288)
Q Consensus 150 ~~~~v~~~~~d~~~~~----------------~~~~~~D~v~~~~~ 179 (288)
. |++|..++++++. .....+|+|+....
T Consensus 244 ~--n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPP 287 (352)
T PF05958_consen 244 D--NVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPP 287 (352)
T ss_dssp ---SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---
T ss_pred C--cceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCC
Confidence 4 8999988765541 11235898886544
No 236
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.97 E-value=5.2e-05 Score=62.14 Aligned_cols=101 Identities=20% Similarity=0.231 Sum_probs=77.0
Q ss_pred CCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEc
Q 036563 80 NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEG 159 (288)
Q Consensus 80 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~ 159 (288)
..-.+++|||+|+|+|..++..+.... .++...|+.+......+-+...+++ ++.+...
T Consensus 76 etVrgkrVLd~gagsgLvaIAaa~aGA------------------~~v~a~d~~P~~~~ai~lNa~angv---~i~~~~~ 134 (218)
T COG3897 76 ETVRGKRVLDLGAGSGLVAIAAARAGA------------------AEVVAADIDPWLEQAIRLNAAANGV---SILFTHA 134 (218)
T ss_pred cccccceeeecccccChHHHHHHHhhh------------------HHHHhcCCChHHHHHhhcchhhccc---eeEEeec
Confidence 345678999999999999998888753 7889999998888877777777664 4777777
Q ss_pred ccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 160 DAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 160 d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
|... .+..+|++++..++..-+...+.+. +...|+..|..++
T Consensus 135 d~~g---~~~~~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 135 DLIG---SPPAFDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred cccC---CCcceeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEE
Confidence 7543 4567999999999887666677777 6666666665444
No 237
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.96 E-value=1.9e-05 Score=63.68 Aligned_cols=76 Identities=22% Similarity=0.289 Sum_probs=56.1
Q ss_pred eEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCC
Q 036563 86 KHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC 165 (288)
Q Consensus 86 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~ 165 (288)
.|+|+.||.|..+..+++.. ..|+++|+++..++.++.++.-.|+. .++.++.+|+.+..
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~-------------------~~Viaidid~~~~~~a~hNa~vYGv~-~~I~~i~gD~~~~~ 61 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF-------------------DRVIAIDIDPERLECAKHNAEVYGVA-DNIDFICGDFFELL 61 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT--------------------EEEEEES-HHHHHHHHHHHHHTT-G-GGEEEEES-HHHHG
T ss_pred EEEEeccCcCHHHHHHHHhC-------------------CeEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEeCCHHHHH
Confidence 69999999999999999986 68999999999999999999998876 79999999987652
Q ss_pred --CCCCC-eeEEEeccccc
Q 036563 166 --FEDST-MDGYTIAFGIR 181 (288)
Q Consensus 166 --~~~~~-~D~v~~~~~l~ 181 (288)
..... +|+|+++....
T Consensus 62 ~~~~~~~~~D~vFlSPPWG 80 (163)
T PF09445_consen 62 KRLKSNKIFDVVFLSPPWG 80 (163)
T ss_dssp GGB------SEEEE---BS
T ss_pred hhccccccccEEEECCCCC
Confidence 22222 89999876543
No 238
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.95 E-value=7.8e-05 Score=60.99 Aligned_cols=154 Identities=16% Similarity=0.129 Sum_probs=94.2
Q ss_pred HHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHH----HHHHHH--hhhc
Q 036563 74 RLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNML----NVGKKR--ALER 147 (288)
Q Consensus 74 ~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~----~~a~~~--~~~~ 147 (288)
+++.+...+++.+|+|+-.|.|.++..+....+ +.+.|+++-+.+... +..+.+ ..+.
T Consensus 39 E~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vg----------------p~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~ 102 (238)
T COG4798 39 EVLAFAGLKPGATVIDLIPGGGYFTRIFSPAVG----------------PKGKVYAYVPAELTKFAKREGPRLNAAAREP 102 (238)
T ss_pred ceeEEeccCCCCEEEEEecCCccHhhhhchhcC----------------CceeEEEecchhhcccccchhhhhhhhhhhh
Confidence 355677788999999999999999999999886 456777665443311 111111 1111
Q ss_pred CCCCCceEEEEcccccCCCCCCCeeEEEeccccccc-------cCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHH
Q 036563 148 GYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNV-------THIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELY 220 (288)
Q Consensus 148 ~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~-------~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~ 220 (288)
.. .|++.+..+...+. +....|+++.+...|.+ ....++...+.+.|||||.+++.|...-...-.+.-
T Consensus 103 ~~--aN~e~~~~~~~A~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt- 178 (238)
T COG4798 103 VY--ANVEVIGKPLVALG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDT- 178 (238)
T ss_pred hh--hhhhhhCCcccccC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhh-
Confidence 11 34555544444444 34456666654433222 235778999999999999999887654322111110
Q ss_pred HHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEE
Q 036563 221 DYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYEN 274 (288)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 274 (288)
...+..+...+....+++||+...-..
T Consensus 179 ---------------------------~~~~ri~~a~V~a~veaaGFkl~aeS~ 205 (238)
T COG4798 179 ---------------------------ITLHRIDPAVVIAEVEAAGFKLEAESE 205 (238)
T ss_pred ---------------------------hhhcccChHHHHHHHHhhcceeeeeeh
Confidence 001233778889999999998765443
No 239
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.91 E-value=5.2e-06 Score=62.15 Aligned_cols=100 Identities=16% Similarity=0.279 Sum_probs=44.0
Q ss_pred EEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCC--ceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC-
Q 036563 88 LDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEE--TRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL- 164 (288)
Q Consensus 88 LDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~- 164 (288)
||+|+..|..+..+++... +. .+++++|..+. .+..++.....++. .+++++.++..+.
T Consensus 1 lEiG~~~G~st~~l~~~~~----------------~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~-~~~~~~~g~s~~~l 62 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALR----------------DNGRGKLYSVDPFPG-DEQAQEIIKKAGLS-DRVEFIQGDSPDFL 62 (106)
T ss_dssp ------------------------------------------EEEESS-------------GGG--BTEEEEES-THHHH
T ss_pred Ccccccccccccccccccc----------------ccccCCEEEEECCCc-ccccchhhhhcCCC-CeEEEEEcCcHHHH
Confidence 6899999999999888764 22 37999999884 22222233223333 5799999997653
Q ss_pred -CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 165 -CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 165 -~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
.++.+++|+++.... |..+.....++.+.+.|+|||.+++-
T Consensus 63 ~~~~~~~~dli~iDg~-H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 63 PSLPDGPIDLIFIDGD-HSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp HHHHH--EEEEEEES----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred HHcCCCCEEEEEECCC-CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 233468999998764 33345677899999999999998864
No 240
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.87 E-value=0.00018 Score=69.29 Aligned_cols=88 Identities=18% Similarity=0.108 Sum_probs=57.8
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
...+|||.|||+|.+...+++........ .. -...++++|+++..+..++.++...+. ....+...|..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~-------~~--~~~~i~g~DId~~a~~~a~~~l~~~~~--~~~~i~~~d~l 99 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYF-------KE--VELNIYFADIDKTLLKRAKKLLGEFAL--LEINVINFNSL 99 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCc-------cc--ceeeeeeechhHHHHHHHHHHHhhcCC--CCceeeecccc
Confidence 34689999999999999998876310000 00 126789999999999999988765531 13344444432
Q ss_pred cC-----CCCCCCeeEEEeccccc
Q 036563 163 AL-----CFEDSTMDGYTIAFGIR 181 (288)
Q Consensus 163 ~~-----~~~~~~~D~v~~~~~l~ 181 (288)
.. ....+.||+|++|....
T Consensus 100 ~~~~~~~~~~~~~fD~IIgNPPy~ 123 (524)
T TIGR02987 100 SYVLLNIESYLDLFDIVITNPPYG 123 (524)
T ss_pred cccccccccccCcccEEEeCCCcc
Confidence 21 11124799999988754
No 241
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.83 E-value=0.00027 Score=57.53 Aligned_cols=111 Identities=15% Similarity=0.169 Sum_probs=74.1
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEc-c
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEG-D 160 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~-d 160 (288)
.|+.+|||+||.+|.++..+.+..+ |++.+.|+|+-.-. . . +.+.++.+ |
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~----------------p~g~v~gVDllh~~---------p--~--~Ga~~i~~~d 118 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVN----------------PNGMVLGVDLLHIE---------P--P--EGATIIQGND 118 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhC----------------CCceEEEEeeeecc---------C--C--CCcccccccc
Confidence 5688999999999999999999986 78999999974311 0 0 24445554 5
Q ss_pred cccC--------CCCCCCeeEEEeccccccc----cCH-------HHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHH
Q 036563 161 AEAL--------CFEDSTMDGYTIAFGIRNV----THI-------EKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYD 221 (288)
Q Consensus 161 ~~~~--------~~~~~~~D~v~~~~~l~~~----~~~-------~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~ 221 (288)
+.+. ..++...|+|++...-... .|- ..++.-....+.|+|.++|--+...+...+.....
T Consensus 119 vtdp~~~~ki~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~ 198 (232)
T KOG4589|consen 119 VTDPETYRKIFEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQ 198 (232)
T ss_pred cCCHHHHHHHHHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHH
Confidence 5443 2566789999987653211 121 22344445677899999997777665555544333
No 242
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.83 E-value=0.00037 Score=62.34 Aligned_cols=106 Identities=17% Similarity=0.205 Sum_probs=78.7
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHh--h---hcCCCCCceEEEE
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRA--L---ERGYPDKSLLWVE 158 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~--~---~~~~~~~~v~~~~ 158 (288)
..++|-+|.|.|.-+..+.+.= ...+++-+|.+|.|++.++++. . +....++++.++.
T Consensus 290 a~~vLvlGGGDGLAlRellkyP-----------------~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~ 352 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYP-----------------QVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVN 352 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCC-----------------CcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEe
Confidence 3479999999999999888862 2579999999999999998442 2 2234468999999
Q ss_pred cccccC-CCCCCCeeEEEeccccccccCH-----HHHHHHHHhhccCCcEEEEE
Q 036563 159 GDAEAL-CFEDSTMDGYTIAFGIRNVTHI-----EKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 159 ~d~~~~-~~~~~~~D~v~~~~~l~~~~~~-----~~~l~~~~~~L~pgG~l~i~ 206 (288)
.|+.++ .-..+.||.|+....=..-+.. ..+..-+.+.|+++|.+++.
T Consensus 353 dDAf~wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQ 406 (508)
T COG4262 353 DDAFQWLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQ 406 (508)
T ss_pred ccHHHHHHhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEe
Confidence 998775 2334589999976542221111 45677889999999999874
No 243
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.81 E-value=0.00033 Score=55.30 Aligned_cols=103 Identities=20% Similarity=0.265 Sum_probs=68.7
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC--CCCCceEEEEc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG--YPDKSLLWVEG 159 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~v~~~~~ 159 (288)
.+..+|+|+|||.|.++..++..+... .++.+++++|.++...+.+.++....+ +. .++.+..+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~-------------~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~ 89 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNS-------------SPNLRVLGIDCNESLVESAQKRAQKLGSDLE-KRLSFIQG 89 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhc-------------CCCCeEEEEECCcHHHHHHHHHHHHhcchhh-ccchhhcc
Confidence 556799999999999999999944210 046899999999999999988887765 32 45666666
Q ss_pred ccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEE
Q 036563 160 DAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 160 d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~ 204 (288)
+...... ....++++..++-... -..+|+...+ ++..++
T Consensus 90 ~~~~~~~-~~~~~~~vgLHaCG~L--s~~~l~~~~~---~~~~~l 128 (141)
T PF13679_consen 90 DIADESS-SDPPDILVGLHACGDL--SDRALRLFIR---PNARFL 128 (141)
T ss_pred chhhhcc-cCCCeEEEEeecccch--HHHHHHHHHH---cCCCEE
Confidence 5543321 4457777775554333 2445555554 444443
No 244
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.79 E-value=0.00017 Score=58.69 Aligned_cols=97 Identities=13% Similarity=0.152 Sum_probs=77.6
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL 164 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~ 164 (288)
..+.|+|+|+|.++...++.. .+|++++.+|.....+++++.-.+. .+++++.+|+...
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A-------------------~rViAiE~dPk~a~~a~eN~~v~g~--~n~evv~gDA~~y 92 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA-------------------ERVIAIEKDPKRARLAEENLHVPGD--VNWEVVVGDARDY 92 (252)
T ss_pred hceeeccCCcchHHHHHHhhh-------------------ceEEEEecCcHHHHHhhhcCCCCCC--cceEEEecccccc
Confidence 689999999999998888874 7999999999999999888755554 5899999999888
Q ss_pred CCCCCCeeEEEeccccccc--cCHHHHHHHHHhhccCCcEEE
Q 036563 165 CFEDSTMDGYTIAFGIRNV--THIEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 165 ~~~~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~ 204 (288)
.+ +..|+|+|-..=..+ .....++..+...||.++.++
T Consensus 93 ~f--e~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 93 DF--ENADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred cc--cccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 77 358999985542211 233567888888999999887
No 245
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.78 E-value=0.00028 Score=64.16 Aligned_cols=115 Identities=22% Similarity=0.269 Sum_probs=90.0
Q ss_pred hcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 78 KLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
.+.++++.||||.++.+|.-+.+++.... ..+.|++.|.+.+.+.....++...|+. +....
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMk----------------n~G~I~AnD~n~~r~~~l~~n~~rlGv~--ntiv~ 297 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMK----------------NTGVIFANDSNENRLKSLKANLHRLGVT--NTIVS 297 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHc----------------CCceEEecccchHHHHHHHHHHHHhCCC--ceEEE
Confidence 44578899999999999998888888775 5689999999999999999999998874 77778
Q ss_pred EcccccCC---CCCCCeeEEEecccccc--c----------c---C-------HHHHHHHHHhhccCCcEEEEEeccCC
Q 036563 158 EGDAEALC---FEDSTMDGYTIAFGIRN--V----------T---H-------IEKALAEAYRVLKRGGRFLCLELSHV 211 (288)
Q Consensus 158 ~~d~~~~~---~~~~~~D~v~~~~~l~~--~----------~---~-------~~~~l~~~~~~L~pgG~l~i~~~~~~ 211 (288)
..|...++ ++. +||-|++...... + . + -.++|.....++++||+|+...++..
T Consensus 298 n~D~~ef~~~~~~~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 298 NYDGREFPEKEFPG-SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred ccCcccccccccCc-ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 88877664 444 8999997554333 1 0 1 14568888899999999997666543
No 246
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.74 E-value=0.0017 Score=58.26 Aligned_cols=87 Identities=14% Similarity=0.202 Sum_probs=64.0
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.+++++||+||++|.++..+++.. .+|+++|..+ |-.. +... ++|.....|.
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG-------------------~~V~AVD~g~-l~~~----L~~~----~~V~h~~~d~ 261 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRG-------------------MFVTAVDNGP-MAQS----LMDT----GQVEHLRADG 261 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcC-------------------CEEEEEechh-cCHh----hhCC----CCEEEEeccC
Confidence 568899999999999999999873 7999999654 2222 2122 6888888887
Q ss_pred ccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCC
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRG 200 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg 200 (288)
.....+.+.+|.++|..+ ..+.++.+-+.+.|..|
T Consensus 262 fr~~p~~~~vDwvVcDmv----e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 262 FKFRPPRKNVDWLVCDMV----EKPARVAELMAQWLVNG 296 (357)
T ss_pred cccCCCCCCCCEEEEecc----cCHHHHHHHHHHHHhcC
Confidence 655323567999999776 34667777777777665
No 247
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.73 E-value=0.0051 Score=54.45 Aligned_cols=83 Identities=10% Similarity=0.073 Sum_probs=48.7
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc-CCCCCceEEEEcccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER-GYPDKSLLWVEGDAE 162 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~v~~~~~d~~ 162 (288)
..++||||+|...+-..+.... .+.+++|+|+++..++.|++.+..+ ++. .++++....-.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~-----------------~~W~fvaTdID~~sl~~A~~nv~~N~~L~-~~I~l~~~~~~ 164 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKL-----------------YGWSFVATDIDPKSLESARENVERNPNLE-SRIELRKQKNP 164 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHH-----------------H--EEEEEES-HHHHHHHHHHHHHT-T-T-TTEEEEE--ST
T ss_pred ceEeecCCccHHHHHHHHhhhh-----------------cCCeEEEecCCHHHHHHHHHHHHhccccc-cceEEEEcCCc
Confidence 4589999999876543333332 2499999999999999999999988 776 78888765322
Q ss_pred c-----CCCCCCCeeEEEecccccccc
Q 036563 163 A-----LCFEDSTMDGYTIAFGIRNVT 184 (288)
Q Consensus 163 ~-----~~~~~~~~D~v~~~~~l~~~~ 184 (288)
. +..+.+.||+.+|+..++...
T Consensus 165 ~~i~~~i~~~~e~~dftmCNPPFy~s~ 191 (299)
T PF05971_consen 165 DNIFDGIIQPNERFDFTMCNPPFYSSQ 191 (299)
T ss_dssp -SSTTTSTT--S-EEEEEE-----SS-
T ss_pred cccchhhhcccceeeEEecCCccccCh
Confidence 1 122346899999999988654
No 248
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=0.00082 Score=56.97 Aligned_cols=143 Identities=17% Similarity=0.197 Sum_probs=92.6
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce-EEEEcc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL-LWVEGD 160 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v-~~~~~d 160 (288)
.++..+||+|+.||.++..+++.. ..+|+++|...+.+..--+.- +++ .+...+
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~g------------------Ak~VyavDVG~~Ql~~kLR~d-------~rV~~~E~tN 132 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRG------------------AKHVYAVDVGYGQLHWKLRND-------PRVIVLERTN 132 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcC------------------CcEEEEEEccCCccCHhHhcC-------CcEEEEecCC
Confidence 567889999999999999999984 389999999887665433221 344 345566
Q ss_pred cccCC---CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccC
Q 036563 161 AEALC---FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAG 237 (288)
Q Consensus 161 ~~~~~---~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (288)
+..+. +. +..|++++.-++- ....+|..+..+++|++.++. ...|+...-+.. . . .+.++..
T Consensus 133 ~r~l~~~~~~-~~~d~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~--LvKPQFEagr~~---v-----~-kkGvv~d 197 (245)
T COG1189 133 VRYLTPEDFT-EKPDLIVIDVSFI---SLKLILPALLLLLKDGGDLVL--LVKPQFEAGREQ---V-----G-KKGVVRD 197 (245)
T ss_pred hhhCCHHHcc-cCCCeEEEEeehh---hHHHHHHHHHHhcCCCceEEE--Eecchhhhhhhh---c-----C-cCceecC
Confidence 66552 22 3688999877654 357789999999999998876 333322211111 1 1 1111111
Q ss_pred CCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEE
Q 036563 238 DRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYEN 274 (288)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 274 (288)
+..+. .-..++.+.+++.||++..+..
T Consensus 198 -~~~~~---------~v~~~i~~~~~~~g~~~~gl~~ 224 (245)
T COG1189 198 -PKLHA---------EVLSKIENFAKELGFQVKGLIK 224 (245)
T ss_pred -cchHH---------HHHHHHHHHHhhcCcEEeeeEc
Confidence 11111 1356788899999999988763
No 249
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.68 E-value=0.00053 Score=53.70 Aligned_cols=82 Identities=22% Similarity=0.333 Sum_probs=59.4
Q ss_pred eEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCC-CCC-CCeeEEEecccccccc-----------CHHHHHHH
Q 036563 126 RIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC-FED-STMDGYTIAFGIRNVT-----------HIEKALAE 192 (288)
Q Consensus 126 ~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~-~~~-~~~D~v~~~~~l~~~~-----------~~~~~l~~ 192 (288)
+|+++|+.+.+++..++++.+.++. .++.++..+-+.+. +.+ +++|+++.|.. +++ ....+|+.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~-~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~Al~~ 77 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLE-DRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLKALEA 77 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-G-SGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCC-CcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHHHHHH
Confidence 5899999999999999999998876 68999998877764 223 47999987765 232 12568999
Q ss_pred HHhhccCCcEEEEEeccC
Q 036563 193 AYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 193 ~~~~L~pgG~l~i~~~~~ 210 (288)
+.++|+|||.+.++-...
T Consensus 78 al~lL~~gG~i~iv~Y~G 95 (140)
T PF06962_consen 78 ALELLKPGGIITIVVYPG 95 (140)
T ss_dssp HHHHEEEEEEEEEEE--S
T ss_pred HHHhhccCCEEEEEEeCC
Confidence 999999999999876543
No 250
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.0055 Score=52.25 Aligned_cols=123 Identities=15% Similarity=0.104 Sum_probs=78.7
Q ss_pred hhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh
Q 036563 67 LHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE 146 (288)
Q Consensus 67 ~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 146 (288)
+.+....+++.... +...+|+|+|+..-+..+++.+... + .-.+++.+|++...+....+.+..
T Consensus 65 Il~~~a~Eia~~~g---~~~lveLGsGns~Ktr~Llda~~~~-----------~--~~~ryvpiDv~a~iL~~ta~ai~~ 128 (321)
T COG4301 65 ILQARAAEIASITG---ACTLVELGSGNSTKTRILLDALAHR-----------G--SLLRYVPIDVSASILRATATAILR 128 (321)
T ss_pred HHHHHHHHHHHhhC---cceEEEecCCccHHHHHHHHHhhhc-----------C--CcceeeeecccHHHHHHHHHHHHH
Confidence 33444445555444 5689999999999888888876310 0 127899999999998776665543
Q ss_pred cCCCCCceEEEEcccccC-C-CCC-CCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEE
Q 036563 147 RGYPDKSLLWVEGDAEAL-C-FED-STMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 147 ~~~~~~~v~~~~~d~~~~-~-~~~-~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
.-.. -.+.-+.+|.+.. . .+. +.-=.++....+.++. +...+|..+...|+||-++++.
T Consensus 129 ~y~~-l~v~~l~~~~~~~La~~~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 129 EYPG-LEVNALCGDYELALAELPRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred hCCC-CeEeehhhhHHHHHhcccCCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 3211 2244455565421 1 222 2334455566677664 4567999999999999999873
No 251
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.61 E-value=0.00038 Score=61.83 Aligned_cols=90 Identities=20% Similarity=0.307 Sum_probs=72.7
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
+.+++++.+...+++.++|.-+|.|..+..+++..+ .++++++|.++.+++.+++++....
T Consensus 8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~-----------------~g~vigiD~D~~Al~~ak~~L~~~~-- 68 (305)
T TIGR00006 8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLG-----------------TGRLIGIDRDPQAIAFAKERLSDFE-- 68 (305)
T ss_pred hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCC-----------------CCEEEEEcCCHHHHHHHHHHHhhcC--
Confidence 346777888878888999999999999999998863 4899999999999999999876542
Q ss_pred CCceEEEEcccccCC-----CCCCCeeEEEecccc
Q 036563 151 DKSLLWVEGDAEALC-----FEDSTMDGYTIAFGI 180 (288)
Q Consensus 151 ~~~v~~~~~d~~~~~-----~~~~~~D~v~~~~~l 180 (288)
.++.++.+++.++. ....++|.|++...+
T Consensus 69 -~R~~~i~~nF~~l~~~l~~~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 69 -GRVVLIHDNFANFFEHLDELLVTKIDGILVDLGV 102 (305)
T ss_pred -CcEEEEeCCHHHHHHHHHhcCCCcccEEEEeccC
Confidence 58999999887752 233568998886653
No 252
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.60 E-value=0.0016 Score=54.53 Aligned_cols=102 Identities=17% Similarity=0.146 Sum_probs=76.5
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+.++.||||--+.+...+.+.. +...+++.|+++..++.|.+.+...++. ++++...+|...
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~-----------------~~~~~va~eV~~gpl~~a~~~v~~~~l~-~~i~vr~~dgl~ 78 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNN-----------------PASTAVAGEVVPGPLESAIRNVKKNNLS-ERIDVRLGDGLA 78 (226)
T ss_pred CCceeeccCchhHhHHHHHhcC-----------------CcceEEEeecccCHHHHHHHHHHhcCCc-ceEEEeccCCcc
Confidence 4569999999999999999987 4688999999999999999999998887 788888888754
Q ss_pred CCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 164 LCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 164 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
.-.+++.+|.|+....=. .-...+|++-...|+.=-++++
T Consensus 79 ~l~~~d~~d~ivIAGMGG--~lI~~ILee~~~~l~~~~rlIL 118 (226)
T COG2384 79 VLELEDEIDVIVIAGMGG--TLIREILEEGKEKLKGVERLIL 118 (226)
T ss_pred ccCccCCcCEEEEeCCcH--HHHHHHHHHhhhhhcCcceEEE
Confidence 334455799988655411 1245566666666664344543
No 253
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.58 E-value=0.00024 Score=59.25 Aligned_cols=98 Identities=16% Similarity=0.160 Sum_probs=73.5
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
...|+|.-||.|..+...+... ..|+++|++|.-+.-|+.+++-.|++ .++.|+++|+.+
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~-------------------~~VisIdiDPikIa~AkhNaeiYGI~-~rItFI~GD~ld 154 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQG-------------------PYVIAIDIDPVKIACARHNAEVYGVP-DRITFICGDFLD 154 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhC-------------------CeEEEEeccHHHHHHHhccceeecCC-ceeEEEechHHH
Confidence 3579999999998888887774 78999999999999999999999999 699999999866
Q ss_pred C----CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCc
Q 036563 164 L----CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGG 201 (288)
Q Consensus 164 ~----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG 201 (288)
+ .+....+|+|+.........-...-+-.+...+.|.|
T Consensus 155 ~~~~lq~~K~~~~~vf~sppwggp~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 155 LASKLKADKIKYDCVFLSPPWGGPSYLRADVYDLETHLKPMG 196 (263)
T ss_pred HHHHHhhhhheeeeeecCCCCCCcchhhhhhhhhhhhcchhH
Confidence 4 3444457788876654443333334445555555553
No 254
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.58 E-value=0.00029 Score=55.44 Aligned_cols=59 Identities=14% Similarity=0.248 Sum_probs=48.8
Q ss_pred eEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 86 KHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 86 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
.++|+|||.|.++..++... +..+++++|+++.+.+.+++++...+++ ++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-----------------~~~~v~~~E~~~~~~~~l~~~~~~n~~~--~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-----------------AEGRVIAFEPLPDAYEILEENVKLNNLP--NVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-----------------CCCEEEEEecCHHHHHHHHHHHHHcCCC--cEEEEEeeeeC
Confidence 48999999999999988875 3568999999999999999998877663 57777766543
No 255
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.38 E-value=0.00027 Score=65.89 Aligned_cols=73 Identities=23% Similarity=0.319 Sum_probs=62.5
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
+...+-+.+..+.+..++|+.||||.++..+++.. .+|+|+++++..++.|+.+...+++.
T Consensus 371 Lys~i~e~~~l~~~k~llDv~CGTG~iglala~~~-------------------~~ViGvEi~~~aV~dA~~nA~~Ngis 431 (534)
T KOG2187|consen 371 LYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV-------------------KRVIGVEISPDAVEDAEKNAQINGIS 431 (534)
T ss_pred HHHHHHHHhCCCCCcEEEEEeecCCceehhhhccc-------------------cceeeeecChhhcchhhhcchhcCcc
Confidence 33456667777778889999999999999999886 79999999999999999999998885
Q ss_pred CCceEEEEcccccC
Q 036563 151 DKSLLWVEGDAEAL 164 (288)
Q Consensus 151 ~~~v~~~~~d~~~~ 164 (288)
|.+|+++-++++
T Consensus 432 --Na~Fi~gqaE~~ 443 (534)
T KOG2187|consen 432 --NATFIVGQAEDL 443 (534)
T ss_pred --ceeeeecchhhc
Confidence 999999955554
No 256
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.38 E-value=0.043 Score=46.88 Aligned_cols=107 Identities=19% Similarity=0.130 Sum_probs=61.9
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
-.+++||-+|=..- .+.+++-.. ...+++++|+++..++..++...+.++ +++....|+
T Consensus 43 L~gk~il~lGDDDL-tSlA~al~~-----------------~~~~I~VvDiDeRll~fI~~~a~~~gl---~i~~~~~Dl 101 (243)
T PF01861_consen 43 LEGKRILFLGDDDL-TSLALALTG-----------------LPKRITVVDIDERLLDFINRVAEEEGL---PIEAVHYDL 101 (243)
T ss_dssp STT-EEEEES-TT--HHHHHHHHT-------------------SEEEEE-S-HHHHHHHHHHHHHHT-----EEEE---T
T ss_pred ccCCEEEEEcCCcH-HHHHHHhhC-----------------CCCeEEEEEcCHHHHHHHHHHHHHcCC---ceEEEEecc
Confidence 35789999984432 333333222 248999999999999999999988886 389999998
Q ss_pred ccC-C-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccC
Q 036563 162 EAL-C-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 162 ~~~-~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
.+. | .-.++||+++....- -.....-++......||..|......+++
T Consensus 102 R~~LP~~~~~~fD~f~TDPPy-T~~G~~LFlsRgi~~Lk~~g~~gy~~~~~ 151 (243)
T PF01861_consen 102 RDPLPEELRGKFDVFFTDPPY-TPEGLKLFLSRGIEALKGEGCAGYFGFTH 151 (243)
T ss_dssp TS---TTTSS-BSEEEE---S-SHHHHHHHHHHHHHTB-STT-EEEEEE-T
T ss_pred cccCCHHHhcCCCEEEeCCCC-CHHHHHHHHHHHHHHhCCCCceEEEEEec
Confidence 763 2 224789999986652 33456778999999999766433334444
No 257
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=97.36 E-value=0.015 Score=53.47 Aligned_cols=126 Identities=15% Similarity=0.219 Sum_probs=72.1
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC---------C--CCC
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG---------Y--PDK 152 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~---------~--~~~ 152 (288)
..+|+|+|||+|..+..+....=..-..-++. ....+|...++.-|.-.+.....-+.+.... + ...
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~--~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~ 141 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYES--AGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGH 141 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhh--cCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCC
Confidence 56899999999988776655431000000000 0122356788888876555544444332100 0 001
Q ss_pred ceEEEEc---ccccCCCCCCCeeEEEeccccccccC--------------------------------------HHHHHH
Q 036563 153 SLLWVEG---DAEALCFEDSTMDGYTIAFGIRNVTH--------------------------------------IEKALA 191 (288)
Q Consensus 153 ~v~~~~~---d~~~~~~~~~~~D~v~~~~~l~~~~~--------------------------------------~~~~l~ 191 (288)
+.-|..+ .+-.--+|.++.+++++..++|++.. ...+|+
T Consensus 142 ~~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~ 221 (386)
T PLN02668 142 RSYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLR 221 (386)
T ss_pred CceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1122222 22222478899999999999987752 122466
Q ss_pred HHHhhccCCcEEEEEeccCC
Q 036563 192 EAYRVLKRGGRFLCLELSHV 211 (288)
Q Consensus 192 ~~~~~L~pgG~l~i~~~~~~ 211 (288)
.-.+-|.|||.+++.-...+
T Consensus 222 ~Ra~ELvpGG~mvl~~~Gr~ 241 (386)
T PLN02668 222 ARAQEMKRGGAMFLVCLGRT 241 (386)
T ss_pred HHHHHhccCcEEEEEEecCC
Confidence 66678899999998765553
No 258
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.28 E-value=0.0017 Score=57.87 Aligned_cols=123 Identities=18% Similarity=0.242 Sum_probs=73.0
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+....+...+.+|||+|.|+|..+.++....+ .-..++.++.|+...+...... ..-.+ .
T Consensus 103 ~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~P----------------dl~sa~ile~sp~lrkV~~tl~-~nv~t-~ 164 (484)
T COG5459 103 DELQKRVPDFAPQSILDVGAGPGTGLWALNDIWP----------------DLKSAVILEASPALRKVGDTLA-ENVST-E 164 (484)
T ss_pred HHHHHhCCCcCcchhhccCCCCchhhhhhcccCC----------------CchhhhhhccCHHHHHHHHHHH-hhccc-c
Confidence 3444444555567899999999988777666553 1245666777776555554332 22111 1
Q ss_pred ceEEEEccccc--CCCC-CCCeeEEEecccccccc---CHHHHHHHHHhhccCCcEEEEEeccCCCh
Q 036563 153 SLLWVEGDAEA--LCFE-DSTMDGYTIAFGIRNVT---HIEKALAEAYRVLKRGGRFLCLELSHVDI 213 (288)
Q Consensus 153 ~v~~~~~d~~~--~~~~-~~~~D~v~~~~~l~~~~---~~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 213 (288)
...+-..|+.. ++++ .+.|+++++.+-+-+.. .....++.+..++.|||.++++|...|..
T Consensus 165 ~td~r~s~vt~dRl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~G 231 (484)
T COG5459 165 KTDWRASDVTEDRLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAG 231 (484)
T ss_pred cCCCCCCccchhccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchh
Confidence 22222223221 1222 34577776655443332 23458999999999999999999888754
No 259
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=97.28 E-value=0.022 Score=51.70 Aligned_cols=181 Identities=17% Similarity=0.167 Sum_probs=86.9
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhccccc------ccCCCceEEEEeCChhHHHHHHHHhhhcC--CC-C
Q 036563 81 PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLED------DLQEETRIYVCDINPNMLNVGKKRALERG--YP-D 151 (288)
Q Consensus 81 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~------~~~~~~~v~~~D~s~~~~~~a~~~~~~~~--~~-~ 151 (288)
.....+|+|+||.+|..+..+....- +.+... .-+|.-.++.-|.=.+.-...-+.+.... +. .
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii-------~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~ 86 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNII-------DAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKF 86 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHH-------HHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHT
T ss_pred CCCceEEEecCCCCCccHHHHHHHHH-------HHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCC
Confidence 34456899999999998888777541 111111 23345688999975554444433332220 00 0
Q ss_pred Cce--EEEEcccccCCCCCCCeeEEEeccccccccCH---------------------------------------HHHH
Q 036563 152 KSL--LWVEGDAEALCFEDSTMDGYTIAFGIRNVTHI---------------------------------------EKAL 190 (288)
Q Consensus 152 ~~v--~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~---------------------------------------~~~l 190 (288)
+++ .-+.+.+-.--+|.++.|++++..++|++... ..+|
T Consensus 87 ~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL 166 (334)
T PF03492_consen 87 RNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFL 166 (334)
T ss_dssp TSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 122 22334444445889999999999998877420 2246
Q ss_pred HHHHhhccCCcEEEEEeccCCCh--------HHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHH
Q 036563 191 AEAYRVLKRGGRFLCLELSHVDI--------PVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMI 262 (288)
Q Consensus 191 ~~~~~~L~pgG~l~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 262 (288)
+.-.+-|+|||.+++.-...++. ..+..+...+..- -.-|.+-...-+.+. --...++.+++++.+
T Consensus 167 ~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dM--v~eGlI~~ek~dsfn----iP~Y~ps~eEv~~~I 240 (334)
T PF03492_consen 167 KARAEELVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDM--VAEGLISEEKVDSFN----IPIYFPSPEEVRAII 240 (334)
T ss_dssp HHHHHHEEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHH--HHTTSS-HCCCCTG------SBB---HHHHHHHH
T ss_pred HHhhheeccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHH--HHcCCcCHHHhhcee----CCccCCCHHHHHHHH
Confidence 66677889999999876655431 1222222222100 001111111111110 112356899999999
Q ss_pred HHcC-CcEEEEEE
Q 036563 263 SDAG-FQKVEYEN 274 (288)
Q Consensus 263 ~~aG-f~~v~~~~ 274 (288)
++.| |++..++.
T Consensus 241 ~~~gsF~I~~le~ 253 (334)
T PF03492_consen 241 EEEGSFEIEKLEL 253 (334)
T ss_dssp HHHTSEEEEEEEE
T ss_pred hcCCCEEEEEEEE
Confidence 9987 55544443
No 260
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.28 E-value=0.0018 Score=60.21 Aligned_cols=103 Identities=21% Similarity=0.294 Sum_probs=82.9
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL 164 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~ 164 (288)
.+++.+|||.-.+...+.+.. ...++.+|+|+..++....+-... .+-..+...|+..+
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G------------------~~dI~~iD~S~V~V~~m~~~~~~~---~~~~~~~~~d~~~l 108 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNG------------------FEDITNIDSSSVVVAAMQVRNAKE---RPEMQMVEMDMDQL 108 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcC------------------CCCceeccccHHHHHHHHhccccC---CcceEEEEecchhc
Confidence 489999999999888887764 378999999998887766554211 15678899999999
Q ss_pred CCCCCCeeEEEeccccccccC----------HHHHHHHHHhhccCCcEEEEEec
Q 036563 165 CFEDSTMDGYTIAFGIRNVTH----------IEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 165 ~~~~~~~D~v~~~~~l~~~~~----------~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.+++++||+|+.-..++++.. ....+.+++++|++||+.+.+.+
T Consensus 109 ~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 109 VFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 999999999999998876631 23468899999999999887665
No 261
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.27 E-value=0.0088 Score=57.04 Aligned_cols=150 Identities=17% Similarity=0.161 Sum_probs=97.3
Q ss_pred HHHHHHHhHhhHHHhhhhhhhh--hhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccc
Q 036563 43 QLVSNVFSSVAKNYDLMNDLMS--GGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDD 120 (288)
Q Consensus 43 ~~~~~~~~~~~~~y~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~ 120 (288)
..+..+|+..-+.|......-. .-..+...+.+++.+.+.+..+|.|.+||+|.+.....+.+.. +
T Consensus 144 d~~G~~yE~ll~~fa~~~~k~~GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~------------~ 211 (489)
T COG0286 144 DLFGDAYEYLLRKFAEAEGKEAGEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKR------------H 211 (489)
T ss_pred cchhHHHHHHHHHHHHhcCCCCCccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHh------------h
Confidence 3455566666655553322110 1112455567788887767779999999999999888888741 0
Q ss_pred cCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCC-C----CCCCeeEEEeccccc--ccc---------
Q 036563 121 LQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC-F----EDSTMDGYTIAFGIR--NVT--------- 184 (288)
Q Consensus 121 ~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~-~----~~~~~D~v~~~~~l~--~~~--------- 184 (288)
+ ....++|.|+++.....++.++--++.. .++....+|-..-+ . ..+.||.|+++..+. .+.
T Consensus 212 ~-~~~~~yGqE~~~~t~~l~~mN~~lhgi~-~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~ 289 (489)
T COG0286 212 Q-DEIFIYGQEINDTTYRLAKMNLILHGIE-GDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQD 289 (489)
T ss_pred c-cceeEEEEeCCHHHHHHHHHHHHHhCCC-ccccccccccccCCcccccCCccceeEEEeCCCCCcccccccccccccc
Confidence 0 0367999999999999999998777654 13344445432222 2 335699999977653 000
Q ss_pred -------------CH-HHHHHHHHhhccCCcEEEEE
Q 036563 185 -------------HI-EKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 185 -------------~~-~~~l~~~~~~L~pgG~l~i~ 206 (288)
.. ..+++++...|+|+|+..++
T Consensus 290 ~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 290 ERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred ccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 01 55789999999998865543
No 262
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.25 E-value=0.013 Score=51.65 Aligned_cols=82 Identities=18% Similarity=0.251 Sum_probs=51.7
Q ss_pred CCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHH
Q 036563 169 STMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVES 248 (288)
Q Consensus 169 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (288)
+.||+|+..+-+.--.+....|..+..+|+|||+.+-+.... +...+--|. ..+..
T Consensus 258 ~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLl--------------YHF~d~~g~----~~~~s------ 313 (369)
T KOG2798|consen 258 GSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLL--------------YHFEDTHGV----ENEMS------ 313 (369)
T ss_pred CccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEecccee--------------eeccCCCCC----ccccc------
Confidence 469999887766665678889999999999999988421100 000000000 00000
Q ss_pred HhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 249 VRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 249 ~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
+ =++.+++..+.+..||+++..+.+.
T Consensus 314 i--Els~edl~~v~~~~GF~~~ke~~Id 339 (369)
T KOG2798|consen 314 I--ELSLEDLKRVASHRGFEVEKERGID 339 (369)
T ss_pred c--cccHHHHHHHHHhcCcEEEEeeeee
Confidence 0 1367889899999999998876443
No 263
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=97.25 E-value=0.0012 Score=55.87 Aligned_cols=107 Identities=19% Similarity=0.192 Sum_probs=74.3
Q ss_pred hhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEE
Q 036563 77 SKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLW 156 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~ 156 (288)
+.++.+|+.+||-+|+++|....++.+..+ |...|++++.|...=.......... +|+-.
T Consensus 150 dnihikpGsKVLYLGAasGttVSHvSDiVG----------------peG~VYAVEfs~rsGRdL~nmAkkR----tNiiP 209 (317)
T KOG1596|consen 150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVG----------------PEGCVYAVEFSHRSGRDLINMAKKR----TNIIP 209 (317)
T ss_pred cceeecCCceEEEeeccCCceeehhhcccC----------------CCceEEEEEecccchHHHHHHhhcc----CCcee
Confidence 355678999999999999999999999887 7889999998875433222222221 67888
Q ss_pred EEcccccCC---CCCCCeeEEEeccccccccCHH-HHHHHHHhhccCCcEEEEE
Q 036563 157 VEGDAEALC---FEDSTMDGYTIAFGIRNVTHIE-KALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 157 ~~~d~~~~~---~~~~~~D~v~~~~~l~~~~~~~-~~l~~~~~~L~pgG~l~i~ 206 (288)
+.-|+.-.. ..-.-.|+|++.-. . +|.. .+.-+....||+||.+++.
T Consensus 210 IiEDArhP~KYRmlVgmVDvIFaDva--q-pdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 210 IIEDARHPAKYRMLVGMVDVIFADVA--Q-PDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred eeccCCCchheeeeeeeEEEEeccCC--C-chhhhhhhhhhhhhhccCCeEEEE
Confidence 888876432 22345788876443 1 2322 2344778999999999863
No 264
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.18 E-value=0.00015 Score=57.14 Aligned_cols=44 Identities=27% Similarity=0.389 Sum_probs=38.3
Q ss_pred cCCCCCCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEE
Q 036563 163 ALCFEDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 163 ~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
...|.+++.|+|++-++++|+. +-..++++|+++|||||++-|.
T Consensus 40 e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 40 ESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred hccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEE
Confidence 3468889999999999999986 4567899999999999999864
No 265
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.12 E-value=0.0015 Score=54.94 Aligned_cols=111 Identities=18% Similarity=0.262 Sum_probs=74.0
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL 164 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~ 164 (288)
.|++|+++.+|.++..+.+.+.. -++..+....+++++|+.+-. +. +.|.-+++|+...
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~--------~~~~~~~~~~kIVaVDLQ~Ma-----------PI--~GV~qlq~DIT~~ 101 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYK--------PLPSSGERDKKIVAVDLQPMA-----------PI--EGVIQLQGDITSA 101 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhc--------cCCCcchhhccEEEEecccCC-----------cc--CceEEeecccCCH
Confidence 58999999999999999888631 001111122359999986532 12 4677788998764
Q ss_pred C--------CCCCCeeEEEeccc-----cccccCH------HHHHHHHHhhccCCcEEEEEeccCCChHHH
Q 036563 165 C--------FEDSTMDGYTIAFG-----IRNVTHI------EKALAEAYRVLKRGGRFLCLELSHVDIPVF 216 (288)
Q Consensus 165 ~--------~~~~~~D~v~~~~~-----l~~~~~~------~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~ 216 (288)
. |..++.|+|+|..+ +|.+++. ..+|.-...+|+|||.|+.--+-..+.+.+
T Consensus 102 stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslL 172 (294)
T KOG1099|consen 102 STAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLL 172 (294)
T ss_pred hHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHHH
Confidence 2 66778999999876 4444332 345667778999999998544444444433
No 266
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.98 E-value=0.0072 Score=53.12 Aligned_cols=90 Identities=23% Similarity=0.338 Sum_probs=73.6
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
+.++.++.+...+++..+|.--|.|..+..+++.++ +.++++++|.++.+++.|++.+...+
T Consensus 11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~----------------~~~~li~~DrD~~Ai~~a~~~l~~~~-- 72 (314)
T COG0275 11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLP----------------DLGRLIGIDRDPQAIAIAKERLKEFD-- 72 (314)
T ss_pred HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCC----------------CCCeEEEEcCCHHHHHHHHHHhhccC--
Confidence 446778888888899999999999999999999985 46789999999999999999987754
Q ss_pred CCceEEEEcccccCC-----CCCCCeeEEEeccc
Q 036563 151 DKSLLWVEGDAEALC-----FEDSTMDGYTIAFG 179 (288)
Q Consensus 151 ~~~v~~~~~d~~~~~-----~~~~~~D~v~~~~~ 179 (288)
+++.++.+.+.++. ...+++|-|+....
T Consensus 73 -~r~~~v~~~F~~l~~~l~~~~i~~vDGiL~DLG 105 (314)
T COG0275 73 -GRVTLVHGNFANLAEALKELGIGKVDGILLDLG 105 (314)
T ss_pred -CcEEEEeCcHHHHHHHHHhcCCCceeEEEEecc
Confidence 68999999877652 22456777776443
No 267
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.91 E-value=0.012 Score=49.30 Aligned_cols=106 Identities=9% Similarity=0.057 Sum_probs=57.9
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+..|+|+|.-.|..+..++..+..- .+.++|+++|++..... ++.....+.. ++++++++|..+
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~-------------~~~~~VigiDIdir~~~--~~a~e~hp~~-~rI~~i~Gds~d 96 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELL-------------GGKGKVIGIDIDIRPHN--RKAIESHPMS-PRITFIQGDSID 96 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHT-------------T---EEEEEES-GTT----S-GGGG-----TTEEEEES-SSS
T ss_pred CCeEEEEecCCCchHHHHHHHHHHh-------------CCCceEEEEeCCcchhc--hHHHhhcccc-CceEEEECCCCC
Confidence 4689999999999888887655310 13589999999544322 2233333333 689999999865
Q ss_pred CC-------C-CCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 164 LC-------F-EDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 164 ~~-------~-~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
.. . ......+|+. .+-|...+..+.|+....++++|+++++-
T Consensus 97 ~~~~~~v~~~~~~~~~vlVil-Ds~H~~~hvl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 97 PEIVDQVRELASPPHPVLVIL-DSSHTHEHVLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp THHHHTSGSS----SSEEEEE-SS----SSHHHHHHHHHHT--TT-EEEET
T ss_pred HHHHHHHHHhhccCCceEEEE-CCCccHHHHHHHHHHhCccCCCCCEEEEE
Confidence 42 1 1123345543 33344567888899999999999999873
No 268
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.91 E-value=0.0037 Score=55.61 Aligned_cols=88 Identities=24% Similarity=0.386 Sum_probs=63.9
Q ss_pred HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 72 ~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
.+++++.+...+++.+||.-.|.|..+..+++..+ .++++++|.++.+++.+++++....
T Consensus 9 l~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~-----------------~~~li~~DrD~~a~~~a~~~l~~~~--- 68 (310)
T PF01795_consen 9 LKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLP-----------------NGRLIGIDRDPEALERAKERLKKFD--- 68 (310)
T ss_dssp HHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-T-----------------T-EEEEEES-HHHHHHHHCCTCCCC---
T ss_pred HHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCC-----------------CCeEEEecCCHHHHHHHHHHHhhcc---
Confidence 35677888888889999999999999999999983 5999999999999999988876542
Q ss_pred CceEEEEcccccCC-----C-CCCCeeEEEeccc
Q 036563 152 KSLLWVEGDAEALC-----F-EDSTMDGYTIAFG 179 (288)
Q Consensus 152 ~~v~~~~~d~~~~~-----~-~~~~~D~v~~~~~ 179 (288)
+++.++.+++.++. . ...++|.|++...
T Consensus 69 ~r~~~~~~~F~~l~~~l~~~~~~~~~dgiL~DLG 102 (310)
T PF01795_consen 69 DRFIFIHGNFSNLDEYLKELNGINKVDGILFDLG 102 (310)
T ss_dssp TTEEEEES-GGGHHHHHHHTTTTS-EEEEEEE-S
T ss_pred ceEEEEeccHHHHHHHHHHccCCCccCEEEEccc
Confidence 68999999988762 2 3357888887544
No 269
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.88 E-value=0.025 Score=51.11 Aligned_cols=126 Identities=24% Similarity=0.314 Sum_probs=82.9
Q ss_pred HHHHHHhhc-----CCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhh
Q 036563 71 WKDRLVSKL-----NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRAL 145 (288)
Q Consensus 71 ~~~~~~~~l-----~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~ 145 (288)
+++..+.++ ..+|+.+|||+++.+|.-+..+++..-.. +..+.+++-|.++..+........
T Consensus 138 ~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~-------------~~~g~vvaND~d~~R~~~L~~q~~ 204 (375)
T KOG2198|consen 138 YRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKD-------------PTRGYVVANDVDPKRLNMLVHQLK 204 (375)
T ss_pred hhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcC-------------CCCCeeEecccCHHHHHHHHHHHh
Confidence 344455544 45789999999999999998888875210 012478999999988887777764
Q ss_pred hcCCCCCceEEEEcccccCC---------CCCCCeeEEEeccc------cccccCH-----------------HHHHHHH
Q 036563 146 ERGYPDKSLLWVEGDAEALC---------FEDSTMDGYTIAFG------IRNVTHI-----------------EKALAEA 193 (288)
Q Consensus 146 ~~~~~~~~v~~~~~d~~~~~---------~~~~~~D~v~~~~~------l~~~~~~-----------------~~~l~~~ 193 (288)
..+ .++..+...|+..++ .....||-|++.-. +.+.++. .++|.+.
T Consensus 205 ~l~--~~~~~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rg 282 (375)
T KOG2198|consen 205 RLP--SPNLLVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRG 282 (375)
T ss_pred ccC--CcceeeecccceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHH
Confidence 332 245555555544332 12346999988433 1111111 3468889
Q ss_pred HhhccCCcEEEEEeccCC
Q 036563 194 YRVLKRGGRFLCLELSHV 211 (288)
Q Consensus 194 ~~~L~pgG~l~i~~~~~~ 211 (288)
.++||+||.++...++..
T Consensus 283 l~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 283 LRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred HHHhcCCCEEEEeccCCC
Confidence 999999999998766654
No 270
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.85 E-value=0.0099 Score=55.71 Aligned_cols=94 Identities=24% Similarity=0.286 Sum_probs=61.1
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCC----hhHHHHHHHHhhhcCCCCCceEEEEcc
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDIN----PNMLNVGKKRALERGYPDKSLLWVEGD 160 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s----~~~~~~a~~~~~~~~~~~~~v~~~~~d 160 (288)
-.|+|..+|.|.++.++.+. + |.+...- ++.+...-. .|+ +.....=
T Consensus 367 RNVMDMnAg~GGFAAAL~~~------------------~---VWVMNVVP~~~~ntL~vIyd----RGL----IG~yhDW 417 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD------------------P---VWVMNVVPVSGPNTLPVIYD----RGL----IGVYHDW 417 (506)
T ss_pred eeeeeecccccHHHHHhccC------------------C---ceEEEecccCCCCcchhhhh----ccc----chhccch
Confidence 36999999999999988764 2 3333332 333332222 121 1112111
Q ss_pred cccCCCCCCCeeEEEecccccccc---CHHHHHHHHHhhccCCcEEEEEe
Q 036563 161 AEALCFEDSTMDGYTIAFGIRNVT---HIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 161 ~~~~~~~~~~~D~v~~~~~l~~~~---~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
.+.++.-..+||++.+...+.... +...+|-++-|+|+|+|.+++-+
T Consensus 418 CE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 418 CEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred hhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 233443346899999999987765 45788999999999999999743
No 271
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.82 E-value=0.013 Score=46.10 Aligned_cols=115 Identities=16% Similarity=0.129 Sum_probs=81.6
Q ss_pred HHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 74 RLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 74 ~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
.+...+...+.++.+|+|+|.|.+....++... ...++++.++-.+..++-+.-..++. ..
T Consensus 63 nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~------------------~~a~GvELNpwLVaysrl~a~R~g~~-k~ 123 (199)
T KOG4058|consen 63 NVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGL------------------RPAVGVELNPWLVAYSRLHAWRAGCA-KS 123 (199)
T ss_pred HHHHHccCCCCCcEEeccCCCceeehhhhhhCC------------------CcCCceeccHHHHHHHHHHHHHHhcc-cc
Confidence 456677777778999999999999888877742 56789999999998888887777776 78
Q ss_pred eEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCC
Q 036563 154 LLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVD 212 (288)
Q Consensus 154 v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 212 (288)
.+|..-|+.+..+.+ |..++...+-.-++| .-.++..-|..+-.++..-+..|.
T Consensus 124 trf~RkdlwK~dl~d--y~~vviFgaes~m~d---Le~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 124 TRFRRKDLWKVDLRD--YRNVVIFGAESVMPD---LEDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred hhhhhhhhhhccccc--cceEEEeehHHHHhh---hHHHHHhhCcCCCeEEEEecCCCc
Confidence 899999988876655 444443333112222 333455567778888876666654
No 272
>PRK10742 putative methyltransferase; Provisional
Probab=96.79 E-value=0.011 Score=50.78 Aligned_cols=92 Identities=10% Similarity=0.029 Sum_probs=68.7
Q ss_pred HHHHhhcCCCCCC--eEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC--
Q 036563 73 DRLVSKLNPFPGM--KHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG-- 148 (288)
Q Consensus 73 ~~~~~~l~~~~~~--~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~-- 148 (288)
+.+++.+..+++. +|||+-+|+|..+..++... ++|+++|-++.+....+..+....
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G-------------------~~V~~vEr~p~vaalL~dgL~ra~~~ 136 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVG-------------------CRVRMLERNPVVAALLDDGLARGYAD 136 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcC-------------------CEEEEEECCHHHHHHHHHHHHHhhhc
Confidence 5567777766666 89999999999999998873 789999999998877777766531
Q ss_pred --CCC---CceEEEEcccccC-CCCCCCeeEEEeccccccc
Q 036563 149 --YPD---KSLLWVEGDAEAL-CFEDSTMDGYTIAFGIRNV 183 (288)
Q Consensus 149 --~~~---~~v~~~~~d~~~~-~~~~~~~D~v~~~~~l~~~ 183 (288)
... .+++++.+|.... .-....||+|++...+.+-
T Consensus 137 ~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 137 AEIGGWLQERLQLIHASSLTALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_pred cccchhhhceEEEEeCcHHHHHhhCCCCCcEEEECCCCCCC
Confidence 110 3688888887654 2123379999998887664
No 273
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.65 E-value=0.028 Score=50.73 Aligned_cols=98 Identities=21% Similarity=0.285 Sum_probs=68.1
Q ss_pred cCCCCCCeEEEecCC-ccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 79 LNPFPGMKHLDVAGG-TGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 79 l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
....|+.+|+=+|+| .|..+..+++.. .++|+++|.+++-++.+++.-. ..++
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~------------------ga~Via~~~~~~K~e~a~~lGA--------d~~i 215 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAM------------------GAEVIAITRSEEKLELAKKLGA--------DHVI 215 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHc------------------CCeEEEEeCChHHHHHHHHhCC--------cEEE
Confidence 455778899988887 356777777765 3999999999999988877532 2333
Q ss_pred Ec-ccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEecc
Q 036563 158 EG-DAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 158 ~~-d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
.. |........+.+|+|+..-. ...+....+.|+++|.++++...
T Consensus 216 ~~~~~~~~~~~~~~~d~ii~tv~-------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 216 NSSDSDALEAVKEIADAIIDTVG-------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred EcCCchhhHHhHhhCcEEEECCC-------hhhHHHHHHHHhcCCEEEEECCC
Confidence 32 22222212234999885433 44577788999999999987665
No 274
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.65 E-value=0.0082 Score=51.54 Aligned_cols=81 Identities=12% Similarity=0.022 Sum_probs=57.2
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.+|+|||||.--++..+.... +...|++.|++..+++.....+...+. +......|..
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~-----------------~~a~Y~a~DID~~~ve~l~~~l~~l~~---~~~~~v~Dl~ 164 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEA-----------------PGATYIAYDIDSQLVEFLNAFLAVLGV---PHDARVRDLL 164 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSS-----------------TT-EEEEEESBHHHHHHHHHHHHHTT----CEEEEEE-TT
T ss_pred CCchhhhhhccCCceehhhcccC-----------------CCcEEEEEeCCHHHHHHHHHHHHhhCC---CcceeEeeee
Confidence 36799999999988887777654 468999999999999999888877764 4566666765
Q ss_pred cCCCCCCCeeEEEecccccccc
Q 036563 163 ALCFEDSTMDGYTIAFGIRNVT 184 (288)
Q Consensus 163 ~~~~~~~~~D~v~~~~~l~~~~ 184 (288)
.-+ +....|+.++.=+++-+.
T Consensus 165 ~~~-~~~~~DlaLllK~lp~le 185 (251)
T PF07091_consen 165 SDP-PKEPADLALLLKTLPCLE 185 (251)
T ss_dssp TSH-TTSEESEEEEET-HHHHH
T ss_pred ccC-CCCCcchhhHHHHHHHHH
Confidence 443 455799999877665543
No 275
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.58 E-value=0.0074 Score=49.98 Aligned_cols=107 Identities=17% Similarity=0.218 Sum_probs=67.7
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC-----CCceEEEE
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP-----DKSLLWVE 158 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-----~~~v~~~~ 158 (288)
.-.+.|||||-|.+...+...+ |...+.|.+|--..-+..+.++...... -+|+....
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~f-----------------PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr 123 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKF-----------------PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLR 123 (249)
T ss_pred cceEEeeccCccchhhhccccC-----------------ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeee
Confidence 3569999999999999999998 6789999999777777777766544311 13556665
Q ss_pred cccccC-C--CCCCCeeEEEeccccccccC--------HHHHHHHHHhhccCCcEEEEEe
Q 036563 159 GDAEAL-C--FEDSTMDGYTIAFGIRNVTH--------IEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 159 ~d~~~~-~--~~~~~~D~v~~~~~l~~~~~--------~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
.++... | +..+..+-.+..+.--|+.. ....+.+..-+|++||.++.+.
T Consensus 124 ~namk~lpn~f~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 124 TNAMKFLPNFFEKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred ccchhhccchhhhcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 554432 1 22222222222222112211 1346888889999999998653
No 276
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=96.47 E-value=0.53 Score=43.41 Aligned_cols=187 Identities=14% Similarity=0.139 Sum_probs=100.4
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeC----ChhHHHHHHHHhhh--
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDI----NPNMLNVGKKRALE-- 146 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~----s~~~~~~a~~~~~~-- 146 (288)
+.+++.+...+..+|+|+|.|.|.--..+++.+.. ...+||.-++|+++. +...++...+++.+
T Consensus 100 qaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~----------R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA 169 (374)
T PF03514_consen 100 QAILEAFEGERRVHIIDFGIGFGVQWPSLIQALAS----------RPGGPPSLRITGIGPPNSGSADELQETGRRLAEFA 169 (374)
T ss_pred HHHHHHhccCcceEEEeccCCcchHHHHHHHHHhc----------CCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHH
Confidence 45666666666779999999999866666666542 114457889999999 67777766666443
Q ss_pred --cCCCCCceEEEEc---ccccC-----CCCCCCeeEEEeccccccccC-------H-HHHHHHHHhhccCCcEEEEEec
Q 036563 147 --RGYPDKSLLWVEG---DAEAL-----CFEDSTMDGYTIAFGIRNVTH-------I-EKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 147 --~~~~~~~v~~~~~---d~~~~-----~~~~~~~D~v~~~~~l~~~~~-------~-~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.|++ .+|... +.+.+ ....+..=+|-+.+.+|++.+ + ..+|+. .+.|+|.-.+++-.-
T Consensus 170 ~~lgv~---fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~-ir~L~P~vvv~~E~e 245 (374)
T PF03514_consen 170 RSLGVP---FEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRV-IRSLNPKVVVLVEQE 245 (374)
T ss_pred HHcCcc---EEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHH-HHhcCCCEEEEEeec
Confidence 3433 444332 22222 122333434445556777742 2 335544 557899977665322
Q ss_pred -cCCChHHHHHHHHHhh--ccccccccccccCCCcchhhh-----HHHH------------hcCCChHHHHHHHHHcCCc
Q 036563 209 -SHVDIPVFKELYDYYS--FSVIPAIGELVAGDRGSYQYL-----VESV------------RRFPPQEKFAAMISDAGFQ 268 (288)
Q Consensus 209 -~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~------------~~~~~~~~~~~~l~~aGf~ 268 (288)
.+....+...+.+.+. ..+...+...+.........+ ...+ .+.-+.+.|+..++.+||+
T Consensus 246 a~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~~r~~~aGF~ 325 (374)
T PF03514_consen 246 ADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWRRRMRRAGFR 325 (374)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHHHHHHhcCCe
Confidence 2323334434333321 111222222221111111111 1111 1223567899999999998
Q ss_pred EEEEE
Q 036563 269 KVEYE 273 (288)
Q Consensus 269 ~v~~~ 273 (288)
.+...
T Consensus 326 ~~~ls 330 (374)
T PF03514_consen 326 PVPLS 330 (374)
T ss_pred ecCCC
Confidence 77664
No 277
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.32 E-value=0.033 Score=48.00 Aligned_cols=104 Identities=13% Similarity=0.018 Sum_probs=66.2
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhh-----hcCCCCCceEEE
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRAL-----ERGYPDKSLLWV 157 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~-----~~~~~~~~v~~~ 157 (288)
.+.+|||+|+|+|..+..++... ..+|...|.... +...+.... ..++. ..+...
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~------------------~~~v~ltD~~~~-~~~L~~~~~~~~~~l~~~g-~~v~v~ 145 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL------------------GAEVVLTDLPKV-VENLKFNRDKNNIALNQLG-GSVIVA 145 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh------------------cceeccCCchhh-HHHHHHhhhhhhhhhhhcC-CceeEE
Confidence 35679999999998888887765 488888886433 222222211 11111 133333
Q ss_pred EcccccC---CCCCCC-eeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 158 EGDAEAL---CFEDST-MDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 158 ~~d~~~~---~~~~~~-~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
..+-... .+.... +|+|++..++.+......++.-++.+|..++.+++.
T Consensus 146 ~L~Wg~~~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~ 198 (248)
T KOG2793|consen 146 ILVWGNALDVSFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLA 198 (248)
T ss_pred EEecCCcccHhhccCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEE
Confidence 3332221 111223 999999999988888888888999999999965543
No 278
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=95.93 E-value=0.028 Score=49.29 Aligned_cols=110 Identities=19% Similarity=0.205 Sum_probs=81.4
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc--CCCCCceEEEEc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER--GYPDKSLLWVEG 159 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~v~~~~~ 159 (288)
..++++|-||.|.|.+....+.+- ....+.-+|++.+.++..++-.+.. ++..+++.+..+
T Consensus 120 ~npkkvlVVgggDggvlrevikH~-----------------~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iG 182 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHK-----------------SVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIG 182 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccc-----------------cccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEec
Confidence 446789999999999998888873 3478999999999999888876543 455678999999
Q ss_pred ccccC--CCCCCCeeEEEeccccccccC----HHHHHHHHHhhccCCcEEEEEec
Q 036563 160 DAEAL--CFEDSTMDGYTIAFGIRNVTH----IEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 160 d~~~~--~~~~~~~D~v~~~~~l~~~~~----~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
|...+ ....++||+|+....=--.+. .......+.+.||+||++.+..-
T Consensus 183 DG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 183 DGFLFLEDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred cHHHHHHHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 87654 244678999986432111110 14567889999999999987653
No 279
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.89 E-value=0.095 Score=50.11 Aligned_cols=101 Identities=20% Similarity=0.199 Sum_probs=68.4
Q ss_pred CCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEc
Q 036563 81 PFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEG 159 (288)
Q Consensus 81 ~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~ 159 (288)
..++.+|+=+|||. |..+...++..+ +.|+++|.+++.++.+++. + ..+...
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lG------------------A~V~a~D~~~~rle~aesl----G-----A~~v~i 214 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLG------------------AIVRAFDTRPEVAEQVESM----G-----AEFLEL 214 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCC------------------CEEEEEeCCHHHHHHHHHc----C-----CeEEEe
Confidence 35688999999997 888888888874 7899999999998888763 1 111111
Q ss_pred cccc-----------C--C--------CCC--CCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 160 DAEA-----------L--C--------FED--STMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 160 d~~~-----------~--~--------~~~--~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
|..+ . . +.+ ..+|+++.......-+.+.-+.++..+.+||||.++.+..
T Consensus 215 ~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 215 DFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred ccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 1100 0 0 011 3589998766543333344445999999999999987654
No 280
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.73 E-value=0.076 Score=46.08 Aligned_cols=54 Identities=20% Similarity=0.369 Sum_probs=39.4
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE 146 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 146 (288)
+.+|+|+|+|+|.++..+++.........+ ...+++.+|+|+.+.+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~---------~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVY---------KRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHH---------TTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhh---------hcceEEEEcCCHHHHHHHHHHhhh
Confidence 469999999999999999998742111111 247999999999998888888765
No 281
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=95.71 E-value=0.15 Score=50.69 Aligned_cols=117 Identities=15% Similarity=0.097 Sum_probs=63.1
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhh-hhhhhhhcccccccCCCceEEEEeCCh---hHHHHHH-----------HHhhhc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNS-IKRRALQDVLEDDLQEETRIYVCDINP---NMLNVGK-----------KRALER 147 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~D~s~---~~~~~a~-----------~~~~~~ 147 (288)
+.-+|+|+|-|+|.......+.... ...++ ...+..-+++.+|..| +.+..+- +....+
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~------~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHP------PARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQW 130 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCC------CCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhC
Confidence 3468999999999977766655410 00000 0000135788888644 2222221 111111
Q ss_pred -----CC-----CCC--ceEEEEcccccC-CCCCCCeeEEEeccc-cccccCH--HHHHHHHHhhccCCcEEEE
Q 036563 148 -----GY-----PDK--SLLWVEGDAEAL-CFEDSTMDGYTIAFG-IRNVTHI--EKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 148 -----~~-----~~~--~v~~~~~d~~~~-~~~~~~~D~v~~~~~-l~~~~~~--~~~l~~~~~~L~pgG~l~i 205 (288)
++ .+. .+.+..+|+.+. +.....+|+++...- -..-++. ..+++.+.++++|||.+.-
T Consensus 131 ~~~~~g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 131 PLLLPGCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred CccCCCceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence 11 011 233555776543 222346999987542 1111222 6789999999999999973
No 282
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=95.64 E-value=0.082 Score=48.71 Aligned_cols=104 Identities=18% Similarity=0.229 Sum_probs=76.3
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+.+|||.=+|+|.=++..+.+.+ ...+|+.-|+|+++++..++++..+++...++.+...|+..
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~----------------~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ 113 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELA----------------GVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANV 113 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-S----------------SECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHH
T ss_pred CceEEeccccccHHHHHHHHHcC----------------CCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHH
Confidence 46899999999999999988853 24789999999999999999999888873368888888866
Q ss_pred CC-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 164 LC-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 164 ~~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
+- .....||+|=. .-+-.+..+|..+.+.++.||.+.+..
T Consensus 114 ll~~~~~~fD~IDl----DPfGSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 114 LLYSRQERFDVIDL----DPFGSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp HHCHSTT-EEEEEE------SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred HhhhccccCCEEEe----CCCCCccHhHHHHHHHhhcCCEEEEec
Confidence 42 24567999953 222356789999999999999998743
No 283
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=95.45 E-value=1.2 Score=38.84 Aligned_cols=154 Identities=17% Similarity=0.139 Sum_probs=84.8
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC-CCCceEEEEccccc
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY-PDKSLLWVEGDAEA 163 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-~~~~v~~~~~d~~~ 163 (288)
..|+.+|||-=.-...+... ++..++=+|. |++++.-++.+.+.+. +..+..++..|+..
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~------------------~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~ 143 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWP------------------DGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQ 143 (260)
T ss_pred cEEEEeCCccccHHHhcCCC------------------CCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchh
Confidence 46999999975555443211 2245555553 4455555555554332 12577888888752
Q ss_pred C--------CCCCCCeeEEEeccccccccC--HHHHHHHHHhhccCCcEEEEEeccCC-ChHHHHHHHHHhhcccccccc
Q 036563 164 L--------CFEDSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCLELSHV-DIPVFKELYDYYSFSVIPAIG 232 (288)
Q Consensus 164 ~--------~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 232 (288)
. .+..+.--++++-.++.+++. ...+++.+.+...||+.+++ +...+ ............. .... +
T Consensus 144 ~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~-d~~~~~~~~~~~~~~~~~~-~~~~--~ 219 (260)
T TIGR00027 144 DWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAF-DYVRPLDGEWRAGMRAPVY-HAAR--G 219 (260)
T ss_pred hHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEE-EeccccchhHHHHHHHHHH-Hhhh--c
Confidence 1 122234557777777777763 56788999888888888875 33322 1111110111100 0000 0
Q ss_pred ccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEE
Q 036563 233 ELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEY 272 (288)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 272 (288)
...+ ......+++++.++|.+.||+..+.
T Consensus 220 ----~~~~-------~~~~~~~~~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 220 ----VDGS-------GLVFGIDRADVAEWLAERGWRASEH 248 (260)
T ss_pred ----cccc-------ccccCCChhhHHHHHHHCCCeeecC
Confidence 0001 1111347899999999999998765
No 284
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.45 E-value=0.23 Score=44.32 Aligned_cols=107 Identities=16% Similarity=0.157 Sum_probs=72.9
Q ss_pred hcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEE
Q 036563 78 KLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLW 156 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~ 156 (288)
+-..+++.+||=+|+|+ |..+..+++.++ ..+|..+|++++.++.|++ +... .+..
T Consensus 164 ~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~G-----------------A~~VVi~d~~~~Rle~Ak~-~Ga~-----~~~~ 220 (354)
T KOG0024|consen 164 RAGVKKGSKVLVLGAGPIGLLTGLVAKAMG-----------------ASDVVITDLVANRLELAKK-FGAT-----VTDP 220 (354)
T ss_pred hcCcccCCeEEEECCcHHHHHHHHHHHHcC-----------------CCcEEEeecCHHHHHHHHH-hCCe-----EEee
Confidence 44557789999999997 889999999885 4899999999999999988 3221 1111
Q ss_pred EEc-c-cccC------CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCCh
Q 036563 157 VEG-D-AEAL------CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDI 213 (288)
Q Consensus 157 ~~~-d-~~~~------~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 213 (288)
... + ...+ ......+|..+-.. .....++.....++++|.++++.+..+..
T Consensus 221 ~~~~~~~~~~~~~v~~~~g~~~~d~~~dCs------G~~~~~~aai~a~r~gGt~vlvg~g~~~~ 279 (354)
T KOG0024|consen 221 SSHKSSPQELAELVEKALGKKQPDVTFDCS------GAEVTIRAAIKATRSGGTVVLVGMGAEEI 279 (354)
T ss_pred ccccccHHHHHHHHHhhccccCCCeEEEcc------CchHHHHHHHHHhccCCEEEEeccCCCcc
Confidence 111 1 1111 12223477776332 34556777788999999998888766543
No 285
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.31 E-value=0.16 Score=47.98 Aligned_cols=105 Identities=14% Similarity=0.152 Sum_probs=76.2
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
...|+-+|+|.|-+....++.... +...-++++++-+|+++-..+.+ ....+. .+|.++..|+..
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~-------------~~RkVklyavEKNPNAivtL~~~-n~~~W~-~~Vtii~~DMR~ 432 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEE-------------TDRKVKLYAVEKNPNAIVTLQNR-NFECWD-NRVTIISSDMRK 432 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHH-------------hcCceEEEEEecCcchhhhhhhh-chhhhc-CeeEEEeccccc
Confidence 356889999999988777766431 01246889999999988776653 233344 789999999999
Q ss_pred CCCCCCCeeEEEeccccccccC---HHHHHHHHHhhccCCcEEE
Q 036563 164 LCFEDSTMDGYTIAFGIRNVTH---IEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 164 ~~~~~~~~D~v~~~~~l~~~~~---~~~~l~~~~~~L~pgG~l~ 204 (288)
+..+.+..|++++ ..|..+.| -...|.-+.+.|||+|..+
T Consensus 433 w~ap~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 433 WNAPREQADIIVS-ELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred cCCchhhccchHH-HhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 8755578999875 23333333 2568889999999998776
No 286
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=95.25 E-value=0.17 Score=43.76 Aligned_cols=115 Identities=16% Similarity=0.143 Sum_probs=63.5
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeC-------C-------------------hh
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDI-------N-------------------PN 135 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~-------s-------------------~~ 135 (288)
.-++.|+|+||-.|..+..+...... ...+..+++++|. + ..
T Consensus 73 ~vpGdivE~GV~rGgs~~~~~~~l~~------------~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~ 140 (248)
T PF05711_consen 73 DVPGDIVECGVWRGGSSILMRAVLEA------------YGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAV 140 (248)
T ss_dssp TS-SEEEEE--TTSHHHHHHHHHHHC------------TTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTH
T ss_pred CCCeEEEEEeeCCCHHHHHHHHHHHH------------hCCCCCEEEEEeCCCCCCCCccccccccchhhhhhccccccc
Confidence 34568999999999877655443210 0112356777773 0 11
Q ss_pred HHHHHHHHhhhcCCCCCceEEEEccccc-CC-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccC
Q 036563 136 MLNVGKKRALERGYPDKSLLWVEGDAEA-LC-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 136 ~~~~a~~~~~~~~~~~~~v~~~~~d~~~-~~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
.++..++++...++.++++.++.|.+.+ ++ .+.+++-++.+..-+ ......+|+.++..|.|||.+++-+...
T Consensus 141 s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl--YesT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 141 SLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDL--YESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp HHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE---S--HHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred CHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEeccc--hHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 3455666666666555789999999754 23 233334333332222 2335778999999999999999754433
No 287
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=95.17 E-value=0.17 Score=45.88 Aligned_cols=64 Identities=20% Similarity=0.303 Sum_probs=46.3
Q ss_pred HHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc
Q 036563 75 LVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER 147 (288)
Q Consensus 75 ~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 147 (288)
+.+.+..+.+..++|+|+|+|.++..++.....-.++.+ ...++..+++|++..+.=++.+...
T Consensus 69 ~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~---------~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 69 LWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELY---------EALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHH---------hcceEEEEecCHHHHHHHHHHHhcc
Confidence 334555556678999999999999999887643222222 3589999999999877766666554
No 288
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.05 E-value=0.12 Score=47.27 Aligned_cols=103 Identities=21% Similarity=0.269 Sum_probs=70.2
Q ss_pred CCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEc-
Q 036563 82 FPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEG- 159 (288)
Q Consensus 82 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~- 159 (288)
.++.+|+=+|||+ |.++..+++..+ ..+++++|.+++.++.|++...... +.....
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~G-----------------a~~Viv~d~~~~Rl~~A~~~~g~~~-----~~~~~~~ 224 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLG-----------------ASVVIVVDRSPERLELAKEAGGADV-----VVNPSED 224 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-----------------CceEEEeCCCHHHHHHHHHhCCCeE-----eecCccc
Confidence 3444899999998 988888888874 4889999999999999988543211 111111
Q ss_pred cc-ccC-CCCC-CCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCC
Q 036563 160 DA-EAL-CFED-STMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVD 212 (288)
Q Consensus 160 d~-~~~-~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 212 (288)
+. ... .... ..+|+++-.-. ....+..+.+.++++|.+.++......
T Consensus 225 ~~~~~~~~~t~g~g~D~vie~~G------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 225 DAGAEILELTGGRGADVVIEAVG------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred cHHHHHHHHhCCCCCCEEEECCC------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 11 000 1122 25999874333 355889999999999999987766554
No 289
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=94.62 E-value=0.073 Score=49.14 Aligned_cols=72 Identities=15% Similarity=0.228 Sum_probs=54.1
Q ss_pred eEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCC
Q 036563 86 KHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC 165 (288)
Q Consensus 86 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~ 165 (288)
.|||||.|||.++..+..... ..+++++.=..|...+++.....++. +++.++.--..+..
T Consensus 69 ~vLdigtGTGLLSmMAvraga------------------D~vtA~EvfkPM~d~arkI~~kng~S-dkI~vInkrStev~ 129 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGA------------------DSVTACEVFKPMVDLARKIMHKNGMS-DKINVINKRSTEVK 129 (636)
T ss_pred EEEEccCCccHHHHHHHHhcC------------------CeEEeehhhchHHHHHHHHHhcCCCc-cceeeeccccceee
Confidence 599999999999998888753 67999999999999999999888888 77777654433332
Q ss_pred CC-CCCeeEEEe
Q 036563 166 FE-DSTMDGYTI 176 (288)
Q Consensus 166 ~~-~~~~D~v~~ 176 (288)
.. ....|+++.
T Consensus 130 vg~~~RadI~v~ 141 (636)
T KOG1501|consen 130 VGGSSRADIAVR 141 (636)
T ss_pred ecCcchhhhhhH
Confidence 11 223555543
No 290
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=94.60 E-value=0.12 Score=43.37 Aligned_cols=113 Identities=16% Similarity=0.059 Sum_probs=63.9
Q ss_pred hcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc----------
Q 036563 78 KLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER---------- 147 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~---------- 147 (288)
.+....+.++.|.+||.|.+...+.-.+.. .-..+++.|+++.+++.|++++.-.
T Consensus 46 ~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~---------------~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~ 110 (246)
T PF11599_consen 46 YLEGKGPYTLYDPCCGSGYLLTVLGLLHRR---------------RLRRVYASDIDEDALELARKNLSLLTPEGLEARRE 110 (246)
T ss_dssp TSSS-S-EEEEETT-TTSHHHHHHHHHTGG---------------GEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred hhcCCCCeeeeccCCCccHHHHHHHHhhhH---------------HHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHH
Confidence 333344568999999999988777665531 2378999999999999998864211
Q ss_pred ------------------------------CCCCCceEEEEcccccCC-----CCCCCeeEEEeccccccccC-------
Q 036563 148 ------------------------------GYPDKSLLWVEGDAEALC-----FEDSTMDGYTIAFGIRNVTH------- 185 (288)
Q Consensus 148 ------------------------------~~~~~~v~~~~~d~~~~~-----~~~~~~D~v~~~~~l~~~~~------- 185 (288)
..........+.|+.+.. ......|+|+......+..+
T Consensus 111 eL~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~ 190 (246)
T PF11599_consen 111 ELRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSG 190 (246)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---H
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCC
Confidence 001122456666665521 11234699998766443332
Q ss_pred --HHHHHHHHHhhccCCcEEEE
Q 036563 186 --IEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 186 --~~~~l~~~~~~L~pgG~l~i 205 (288)
...+|..+.++|-+++++.+
T Consensus 191 ~p~~~ml~~l~~vLp~~sVV~v 212 (246)
T PF11599_consen 191 GPVAQMLNSLAPVLPERSVVAV 212 (246)
T ss_dssp HHHHHHHHHHHCCS-TT-EEEE
T ss_pred CcHHHHHHHHHhhCCCCcEEEE
Confidence 35689999999955555555
No 291
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.45 E-value=0.2 Score=42.51 Aligned_cols=83 Identities=14% Similarity=0.109 Sum_probs=54.8
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc-CCCCCceEEEEc-c
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER-GYPDKSLLWVEG-D 160 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~v~~~~~-d 160 (288)
++.++||||.|.-.+--.+-.+- =+.+++|.|+++..++.|+..+..+ ++. ..++.... |
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~e-----------------YgwrfvGseid~~sl~sA~~ii~~N~~l~-~~I~lr~qk~ 139 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHE-----------------YGWRFVGSEIDSQSLSSAKAIISANPGLE-RAIRLRRQKD 139 (292)
T ss_pred CceEEEeeccCccccccccccee-----------------ecceeecCccCHHHHHHHHHHHHcCcchh-hheeEEeccC
Confidence 45689999999765432222211 1389999999999999999888776 333 34444332 2
Q ss_pred cccC----CCCCCCeeEEEeccccccc
Q 036563 161 AEAL----CFEDSTMDGYTIAFGIRNV 183 (288)
Q Consensus 161 ~~~~----~~~~~~~D~v~~~~~l~~~ 183 (288)
-..+ .-.++.||..+|+..+|..
T Consensus 140 ~~~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 140 SDAIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred ccccccccccccceeeeEecCCCcchh
Confidence 2111 1236789999999999865
No 292
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=94.42 E-value=0.035 Score=48.45 Aligned_cols=103 Identities=17% Similarity=0.131 Sum_probs=62.1
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHH-----------HhhhcCCC
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKK-----------RALERGYP 150 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~-----------~~~~~~~~ 150 (288)
..+++|||+|||+|.....+.... ...++..|.+...++...- ...+..
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~------------------~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~-- 174 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKG------------------AVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENH-- 174 (282)
T ss_pred ecCceeEecCCcccccchhhhhhc------------------cceeeeEecchhheeeecccceecchhhhhhhhhcc--
Confidence 357899999999999888887764 2677788877766521100 000000
Q ss_pred CCceEEEEc---ccccCCCCCCCeeEEEeccccccccCHHHH-HHHHHhhccCCcEEEE
Q 036563 151 DKSLLWVEG---DAEALCFEDSTMDGYTIAFGIRNVTHIEKA-LAEAYRVLKRGGRFLC 205 (288)
Q Consensus 151 ~~~v~~~~~---d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~-l~~~~~~L~pgG~l~i 205 (288)
.-...... |.....-....||+|.++-.+...+..... +.....+++++|.+++
T Consensus 175 -~~~~i~~s~l~dg~~~~t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~ 232 (282)
T KOG2920|consen 175 -KVDEILNSLLSDGVFNHTERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYV 232 (282)
T ss_pred -cceeccccccccchhhhccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhh
Confidence 00111111 211110011279999998888877766655 6677788888998874
No 293
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.38 E-value=0.29 Score=44.30 Aligned_cols=101 Identities=16% Similarity=0.213 Sum_probs=60.3
Q ss_pred CCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEE
Q 036563 80 NPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVE 158 (288)
Q Consensus 80 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~ 158 (288)
...++.+||=.|||. |..+..+++..+ ..+++++|.+++.++.+++. +.. .-+....
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G-----------------~~~Vi~~~~~~~~~~~a~~l----Ga~-~vi~~~~ 223 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTLG-----------------AAEIVCADVSPRSLSLAREM----GAD-KLVNPQN 223 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-----------------CcEEEEEeCCHHHHHHHHHc----CCc-EEecCCc
Confidence 334577888888864 666666777653 13689999999888877653 211 0011111
Q ss_pred cccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 159 GDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 159 ~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.+........+.+|+|+-... ....+....+.|+++|.++++..
T Consensus 224 ~~~~~~~~~~g~~D~vid~~G------~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 224 DDLDHYKAEKGYFDVSFEVSG------HPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ccHHHHhccCCCCCEEEECCC------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 112111111234888864321 23467778899999999998654
No 294
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=94.35 E-value=0.12 Score=44.10 Aligned_cols=91 Identities=20% Similarity=0.210 Sum_probs=51.6
Q ss_pred HHHHhhcCCCCCC--eEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc--C
Q 036563 73 DRLVSKLNPFPGM--KHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER--G 148 (288)
Q Consensus 73 ~~~~~~l~~~~~~--~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~ 148 (288)
+.+++..+..++. +|||.-+|-|.-+..++.. +++|+++|-||-+....+..+... .
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~-------------------G~~V~~lErspvia~Ll~dGL~r~~~~ 123 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL-------------------GCKVTGLERSPVIAALLKDGLKRAQQD 123 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHH-------------------T--EEEEE--HHHHHHHHHHHHHHHHS
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc-------------------CCeEEEEECCHHHHHHHHHHHHHHHhC
Confidence 3455666655543 8999999999999988753 389999999997665544332211 1
Q ss_pred CC-----CCceEEEEcccccC-CCCCCCeeEEEecccccc
Q 036563 149 YP-----DKSLLWVEGDAEAL-CFEDSTMDGYTIAFGIRN 182 (288)
Q Consensus 149 ~~-----~~~v~~~~~d~~~~-~~~~~~~D~v~~~~~l~~ 182 (288)
-. -.+++++.+|..+. ..++.+||+|.+...+.+
T Consensus 124 ~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 124 PELLAEAMRRIQLIHGDALEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp TTTHHHHHHHEEEEES-CCCHCCCHSS--SEEEE--S---
T ss_pred cHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEEEECCCCCC
Confidence 00 03789999997663 455678999999888765
No 295
>PRK11524 putative methyltransferase; Provisional
Probab=93.84 E-value=0.23 Score=43.93 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=43.9
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE 146 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 146 (288)
+.++.... .++..|||.-||+|..+.++.+. +.+++|+|++++..+.+++++..
T Consensus 199 erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~l-------------------gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 199 KRIILASS-NPGDIVLDPFAGSFTTGAVAKAS-------------------GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHhC-CCCCEEEECCCCCcHHHHHHHHc-------------------CCCEEEEeCCHHHHHHHHHHHHh
Confidence 34444443 46889999999999999887776 48999999999999999999753
No 296
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=93.78 E-value=0.88 Score=41.93 Aligned_cols=109 Identities=21% Similarity=0.217 Sum_probs=67.8
Q ss_pred hcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEE
Q 036563 78 KLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLW 156 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~ 156 (288)
.....++.+||.+|||+ |..+..+++..+ ..+++++|.++...+.+++.... ..+.+
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g-----------------~~~vi~~~~~~~~~~~~~~~~~~-----~vi~~ 236 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLG-----------------AERVIAIDRVPERLEMARSHLGA-----ETINF 236 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHcC-----------------CCEEEEEcCCHHHHHHHHHcCCc-----EEEcC
Confidence 34456778999999987 888888888763 23699999999888887764211 01111
Q ss_pred EEcc-ccc-C-CC-CCCCeeEEEeccc---------------cccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 157 VEGD-AEA-L-CF-EDSTMDGYTIAFG---------------IRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 157 ~~~d-~~~-~-~~-~~~~~D~v~~~~~---------------l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
...+ ... + .+ ....+|+++-.-. ++...+....+.++.+.++++|.+++...
T Consensus 237 ~~~~~~~~~l~~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 237 EEVDDVVEALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CcchHHHHHHHHHcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 1111 110 1 11 2235888875321 11113445678899999999999987643
No 297
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=93.73 E-value=0.27 Score=37.87 Aligned_cols=87 Identities=18% Similarity=0.244 Sum_probs=53.4
Q ss_pred ceEEEEcccccC-CCCCCCeeEEEeccccccccCH----HHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccc
Q 036563 153 SLLWVEGDAEAL-CFEDSTMDGYTIAFGIRNVTHI----EKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSV 227 (288)
Q Consensus 153 ~v~~~~~d~~~~-~~~~~~~D~v~~~~~l~~~~~~----~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~ 227 (288)
.+.+..+|+.+. +.....+|+++...- .--.++ ..+++++.++++|||.+..
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgF-sP~~nPelWs~e~~~~l~~~~~~~~~l~T---------------------- 88 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGF-SPAKNPELWSEELFKKLARLSKPGGTLAT---------------------- 88 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS--TTTSGGGSSHHHHHHHHHHEEEEEEEEE----------------------
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCC-CCcCCcccCCHHHHHHHHHHhCCCcEEEE----------------------
Confidence 456677887542 222367999997642 111122 6799999999999999873
Q ss_pred cccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEeee
Q 036563 228 IPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLK 287 (288)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~k 287 (288)
+.....++..|.++||.+....-+ ++--....|.|
T Consensus 89 ------------------------ys~a~~Vr~~L~~aGF~v~~~~g~-g~Kr~~~~a~~ 123 (124)
T PF05430_consen 89 ------------------------YSSAGAVRRALQQAGFEVEKVPGF-GRKREMLRAVK 123 (124)
T ss_dssp ------------------------S--BHHHHHHHHHCTEEEEEEE-S-TTSSEEEEEEC
T ss_pred ------------------------eechHHHHHHHHHcCCEEEEcCCC-CCcchheEEEc
Confidence 224567899999999997666543 43334444444
No 298
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.73 E-value=0.27 Score=47.01 Aligned_cols=97 Identities=16% Similarity=0.163 Sum_probs=64.9
Q ss_pred CCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcc
Q 036563 82 FPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGD 160 (288)
Q Consensus 82 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d 160 (288)
.++.+++=+|+|. |..+..++...+ +.++++|.+++.++.+++. + ..++..|
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lG------------------A~V~v~d~~~~rle~a~~l----G-----a~~v~v~ 214 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLG------------------AIVRAFDTRPEVKEQVQSM----G-----AEFLELD 214 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC------------------CEEEEEeCCHHHHHHHHHc----C-----CeEEecc
Confidence 3568999999997 777777777763 7899999999987777652 1 1222222
Q ss_pred ccc-----------------------CCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 161 AEA-----------------------LCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 161 ~~~-----------------------~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
..+ ++..-..+|+|+..-.+..-+.+.-+.++..+.+|||+.++=
T Consensus 215 ~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 215 FKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred ccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 110 111124599998776555544554567788999999998773
No 299
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=93.62 E-value=0.24 Score=41.60 Aligned_cols=50 Identities=26% Similarity=0.351 Sum_probs=37.4
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHH
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKK 142 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~ 142 (288)
+.++.... .++..|||.=||+|..+.++.+. +.+++++|+++...+.|++
T Consensus 182 ~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l-------------------~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 182 ERLIKAST-NPGDIVLDPFAGSGTTAVAAEEL-------------------GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHS--TT-EEEETT-TTTHHHHHHHHT-------------------T-EEEEEESSHHHHHHHHH
T ss_pred HHHHHhhh-ccceeeehhhhccChHHHHHHHc-------------------CCeEEEEeCCHHHHHHhcC
Confidence 44555544 45789999999999999888776 3789999999999988864
No 300
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=93.43 E-value=0.047 Score=40.79 Aligned_cols=36 Identities=14% Similarity=0.244 Sum_probs=27.7
Q ss_pred CeeEEEeccccccc--c----CHHHHHHHHHhhccCCcEEEE
Q 036563 170 TMDGYTIAFGIRNV--T----HIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 170 ~~D~v~~~~~l~~~--~----~~~~~l~~~~~~L~pgG~l~i 205 (288)
.||+|+|..+..++ + ....+++.+.+.|+|||.+++
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil 42 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL 42 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE
Confidence 48999998874433 1 357799999999999999985
No 301
>PHA01634 hypothetical protein
Probab=93.43 E-value=0.51 Score=36.36 Aligned_cols=47 Identities=9% Similarity=-0.093 Sum_probs=40.0
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER 147 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 147 (288)
.+.+|+|||++-|..++.++-.. ...|+++++++...+..++.+...
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~G------------------AK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRG------------------ASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcC------------------ccEEEEeccCHHHHHHHHHHhhhh
Confidence 46799999999999999998874 378999999999999888866543
No 302
>PRK13699 putative methylase; Provisional
Probab=93.08 E-value=0.5 Score=40.37 Aligned_cols=51 Identities=22% Similarity=0.335 Sum_probs=34.6
Q ss_pred EEEEcccccC--CCCCCCeeEEEeccccc----c-----c--c---C-HHHHHHHHHhhccCCcEEEE
Q 036563 155 LWVEGDAEAL--CFEDSTMDGYTIAFGIR----N-----V--T---H-IEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 155 ~~~~~d~~~~--~~~~~~~D~v~~~~~l~----~-----~--~---~-~~~~l~~~~~~L~pgG~l~i 205 (288)
+++.+|+.+. .++++++|+|+...... . + . + ....+.++.|+|||||.+++
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4566776554 46777888888765432 0 0 0 1 24678999999999998875
No 303
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.02 E-value=2.4 Score=31.58 Aligned_cols=86 Identities=19% Similarity=0.159 Sum_probs=55.6
Q ss_pred CCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCC----CC
Q 036563 92 GGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC----FE 167 (288)
Q Consensus 92 ~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~----~~ 167 (288)
||.|.++..+++.+.. ...+++.+|.+++..+.++.. .+.++.+|..+.. ..
T Consensus 4 ~G~g~~~~~i~~~L~~---------------~~~~vvvid~d~~~~~~~~~~---------~~~~i~gd~~~~~~l~~a~ 59 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKE---------------GGIDVVVIDRDPERVEELREE---------GVEVIYGDATDPEVLERAG 59 (116)
T ss_dssp ES-SHHHHHHHHHHHH---------------TTSEEEEEESSHHHHHHHHHT---------TSEEEES-TTSHHHHHHTT
T ss_pred EcCCHHHHHHHHHHHh---------------CCCEEEEEECCcHHHHHHHhc---------ccccccccchhhhHHhhcC
Confidence 6777888888888752 124899999999887776653 4678889987642 22
Q ss_pred CCCeeEEEeccccccccCHH-HHHHHHHhhccCCcEEEE
Q 036563 168 DSTMDGYTIAFGIRNVTHIE-KALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 168 ~~~~D~v~~~~~l~~~~~~~-~~l~~~~~~L~pgG~l~i 205 (288)
-.+.|.+++... .+.. ..+....+.+.|...+++
T Consensus 60 i~~a~~vv~~~~----~d~~n~~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 60 IEKADAVVILTD----DDEENLLIALLARELNPDIRIIA 94 (116)
T ss_dssp GGCESEEEEESS----SHHHHHHHHHHHHHHTTTSEEEE
T ss_pred ccccCEEEEccC----CHHHHHHHHHHHHHHCCCCeEEE
Confidence 346887776443 2222 234455666778888775
No 304
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=92.95 E-value=0.28 Score=45.79 Aligned_cols=114 Identities=15% Similarity=0.126 Sum_probs=70.7
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh--c-CCC-CCceEE
Q 036563 81 PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE--R-GYP-DKSLLW 156 (288)
Q Consensus 81 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~--~-~~~-~~~v~~ 156 (288)
...+..++|+|.|.|.-.-++...-. +-...++.||.+..|.....+.... . +.. ..++.+
T Consensus 198 ~f~pd~~~dfgsg~~~~~~a~~~lwr---------------~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~ 262 (491)
T KOG2539|consen 198 KFRPDLLRDFGSGAGNGGWAAVLLWR---------------QTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVF 262 (491)
T ss_pred ccChHHHHHHHhhcccchhhhhhhcc---------------cccceeEeeccchHHHHHHHHhhcChhhcCchhccccch
Confidence 34456788999887654433333221 0136899999999999998887765 1 110 011111
Q ss_pred EEcccccCCC-CCCCeeEEEeccccccccCH----HHHHHHHHhhccCCcEEEEEeccCCC
Q 036563 157 VEGDAEALCF-EDSTMDGYTIAFGIRNVTHI----EKALAEAYRVLKRGGRFLCLELSHVD 212 (288)
Q Consensus 157 ~~~d~~~~~~-~~~~~D~v~~~~~l~~~~~~----~~~l~~~~~~L~pgG~l~i~~~~~~~ 212 (288)
...- ++. ....||+|++.+.+++..+. ...-..+.+..++|+.+++++-..+.
T Consensus 263 ~r~~---~pi~~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~ 320 (491)
T KOG2539|consen 263 HRQR---LPIDIKNGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTM 320 (491)
T ss_pred hccc---CCCCcccceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCcc
Confidence 1111 232 23459999999999988643 22344566777889999998876653
No 305
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=92.86 E-value=0.6 Score=38.58 Aligned_cols=107 Identities=13% Similarity=0.182 Sum_probs=72.3
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
.+..|+|+|.-.|..+...+...-. .. ...++.++|++-..+..+.... +++.+++++..
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s-----------~G--q~~kvl~vdIdi~~~~p~a~e~-------p~i~f~egss~ 128 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMIS-----------IG--QPFKVLGVDIDIKPLDPAAREV-------PDILFIEGSST 128 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHh-----------cC--CCceEEEEecccCcCChhhhcC-------CCeEEEeCCCC
Confidence 3468999999999888887775410 01 2378999998766554333221 68999999876
Q ss_pred cCC-------CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEecc
Q 036563 163 ALC-------FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 163 ~~~-------~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
... ..++.--+.+|..+-|+.......|+-..++|.-|-++++-+..
T Consensus 129 dpai~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~ 182 (237)
T COG3510 129 DPAIAEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSN 182 (237)
T ss_pred CHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEeccc
Confidence 642 12222234455556666667778888899999999999875443
No 306
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=92.75 E-value=3.7 Score=39.43 Aligned_cols=122 Identities=11% Similarity=0.093 Sum_probs=71.4
Q ss_pred HHHHHhhcCCC--CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC
Q 036563 72 KDRLVSKLNPF--PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY 149 (288)
Q Consensus 72 ~~~~~~~l~~~--~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~ 149 (288)
.+.+.+.+... |+..|.|..||+|.+......... +++....+++.+..+++...++..+.-.+.
T Consensus 204 v~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~-------------~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~ 270 (501)
T TIGR00497 204 SELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLG-------------EKTSLVSYYGQEINHTTYNLCRMNMILHNI 270 (501)
T ss_pred HHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhc-------------ccccceeEEEEeCchHHHHHHHHHHHHcCC
Confidence 34444444432 456899999999998876544321 112346799999999999999887644433
Q ss_pred CCCceEEEEccc-ccCCC-CCCCeeEEEecccccc---------------------cc----CHHHHHHHHHhhccCCcE
Q 036563 150 PDKSLLWVEGDA-EALCF-EDSTMDGYTIAFGIRN---------------------VT----HIEKALAEAYRVLKRGGR 202 (288)
Q Consensus 150 ~~~~v~~~~~d~-~~~~~-~~~~~D~v~~~~~l~~---------------------~~----~~~~~l~~~~~~L~pgG~ 202 (288)
..+......+|- ..+.+ ....||.|+++..+.. ++ .-..++..+...|++||.
T Consensus 271 ~~~t~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~ 350 (501)
T TIGR00497 271 DYANFNIINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGT 350 (501)
T ss_pred CccccCcccCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCe
Confidence 211222223332 21212 2345787776553211 01 123478888999999997
Q ss_pred EEEE
Q 036563 203 FLCL 206 (288)
Q Consensus 203 l~i~ 206 (288)
..++
T Consensus 351 ~aiI 354 (501)
T TIGR00497 351 AAIV 354 (501)
T ss_pred EEEE
Confidence 5543
No 307
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=92.53 E-value=2 Score=34.78 Aligned_cols=133 Identities=14% Similarity=0.119 Sum_probs=78.2
Q ss_pred ecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEE--EeCChhHHHH---HHHHhhhcCCCCCceE-EEEccccc
Q 036563 90 VAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYV--CDINPNMLNV---GKKRALERGYPDKSLL-WVEGDAEA 163 (288)
Q Consensus 90 iG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~D~s~~~~~~---a~~~~~~~~~~~~~v~-~~~~d~~~ 163 (288)
||=|.=.++..+++.++ ....+++ .|...+..+. +..++... ...++. ....|+.+
T Consensus 3 vGeGdfSFs~sL~~~~~----------------~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L--~~~g~~V~~~VDat~ 64 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFG----------------SATNLVATSYDSEEELLQKYPDAEENLEEL--RELGVTVLHGVDATK 64 (166)
T ss_pred eeccchHHHHHHHHHcC----------------CCCeEEEeecCchHHHHHhcccHHHHHHHH--hhcCCccccCCCCCc
Confidence 55566677788888763 1344544 4443322221 11222222 112333 35567776
Q ss_pred CC----CCCCCeeEEEecccccc-----cc-C-------HHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcc
Q 036563 164 LC----FEDSTMDGYTIAFGIRN-----VT-H-------IEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFS 226 (288)
Q Consensus 164 ~~----~~~~~~D~v~~~~~l~~-----~~-~-------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~ 226 (288)
+. .....||.|+.++.... .. + ...+++.+.++|+++|.+.+.-.....
T Consensus 65 l~~~~~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p-------------- 130 (166)
T PF10354_consen 65 LHKHFRLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP-------------- 130 (166)
T ss_pred ccccccccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC--------------
Confidence 63 24578999999887443 01 1 245789999999999999975332211
Q ss_pred ccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCee
Q 036563 227 VIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVV 280 (288)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~ 280 (288)
++...++++-+++||..++..++....+
T Consensus 131 --------------------------y~~W~i~~lA~~~gl~l~~~~~F~~~~y 158 (166)
T PF10354_consen 131 --------------------------YDSWNIEELAAEAGLVLVRKVPFDPSDY 158 (166)
T ss_pred --------------------------CccccHHHHHHhcCCEEEEEecCCHHHC
Confidence 1334566788889999888877765443
No 308
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=92.40 E-value=0.43 Score=41.99 Aligned_cols=72 Identities=14% Similarity=0.129 Sum_probs=51.6
Q ss_pred eEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCC
Q 036563 86 KHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC 165 (288)
Q Consensus 86 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~ 165 (288)
+++|+-||.|.++..+.+.. ...+.++|+++.+.+..+.+... . ...+|+.++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G------------------~~~v~a~e~~~~a~~~~~~N~~~-------~-~~~~Di~~~~ 55 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG------------------FEIVAANEIDKSAAETYEANFPN-------K-LIEGDITKID 55 (275)
T ss_pred cEEEEccCcchHHHHHHHcC------------------CEEEEEEeCCHHHHHHHHHhCCC-------C-CccCccccCc
Confidence 79999999999987776652 25678899999998887776532 1 4556776653
Q ss_pred CC--CCCeeEEEeccccccc
Q 036563 166 FE--DSTMDGYTIAFGIRNV 183 (288)
Q Consensus 166 ~~--~~~~D~v~~~~~l~~~ 183 (288)
.. ...+|+++.......+
T Consensus 56 ~~~~~~~~D~l~~gpPCq~f 75 (275)
T cd00315 56 EKDFIPDIDLLTGGFPCQPF 75 (275)
T ss_pred hhhcCCCCCEEEeCCCChhh
Confidence 21 2469999988765533
No 309
>PRK13699 putative methylase; Provisional
Probab=92.36 E-value=0.58 Score=40.01 Aligned_cols=55 Identities=18% Similarity=0.291 Sum_probs=43.8
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER 147 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 147 (288)
+.++.... .++..|||.=||+|..+.+..+. +.+++|+|+++...+.+.+++...
T Consensus 154 ~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~-------------------~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 154 QPLIESFT-HPNAIVLDPFAGSGSTCVAALQS-------------------GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHc-------------------CCCEEEEecCHHHHHHHHHHHHHH
Confidence 34444433 46789999999999999888775 378999999999999998887653
No 310
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=92.12 E-value=1 Score=34.17 Aligned_cols=86 Identities=16% Similarity=0.247 Sum_probs=58.4
Q ss_pred CccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC-----C-C
Q 036563 93 GTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL-----C-F 166 (288)
Q Consensus 93 G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~-----~-~ 166 (288)
|.|..+..+++.. +.+++++|.++..++.+++.- --.++..+-.++ . .
T Consensus 1 ~vG~~a~q~ak~~------------------G~~vi~~~~~~~k~~~~~~~G--------a~~~~~~~~~~~~~~i~~~~ 54 (130)
T PF00107_consen 1 GVGLMAIQLAKAM------------------GAKVIATDRSEEKLELAKELG--------ADHVIDYSDDDFVEQIRELT 54 (130)
T ss_dssp HHHHHHHHHHHHT------------------TSEEEEEESSHHHHHHHHHTT--------ESEEEETTTSSHHHHHHHHT
T ss_pred ChHHHHHHHHHHc------------------CCEEEEEECCHHHHHHHHhhc--------cccccccccccccccccccc
Confidence 4577888888886 399999999999888876532 112232222211 1 2
Q ss_pred CCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccC
Q 036563 167 EDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 167 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
....+|+|+-.- .....++....+|+++|.++++....
T Consensus 55 ~~~~~d~vid~~------g~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 55 GGRGVDVVIDCV------GSGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp TTSSEEEEEESS------SSHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ccccceEEEEec------CcHHHHHHHHHHhccCCEEEEEEccC
Confidence 234799997432 23568889999999999999876654
No 311
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=92.06 E-value=0.82 Score=40.70 Aligned_cols=125 Identities=13% Similarity=0.143 Sum_probs=73.5
Q ss_pred CCeEEEecCCccHHHHHHHHhhh-h--hhhhhhhcccccccCCCceEEEEeCChh--HHHHHHHHhhhc----------C
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVN-S--IKRRALQDVLEDDLQEETRIYVCDINPN--MLNVGKKRALER----------G 148 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~-~--~~~~~~~~~~~~~~~~~~~v~~~D~s~~--~~~~a~~~~~~~----------~ 148 (288)
..+||.||.|.|.-..+++.... . ........-.....++...++.+|+.+- .+......+... +
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 36999999999876666666551 0 0000000000001223468999998663 333333333222 0
Q ss_pred C---C--CCceEEEEcccccCCCC-------CCCeeEEEeccccccc-----cCHHHHHHHHHhhccCCcEEEEEec
Q 036563 149 Y---P--DKSLLWVEGDAEALCFE-------DSTMDGYTIAFGIRNV-----THIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 149 ~---~--~~~v~~~~~d~~~~~~~-------~~~~D~v~~~~~l~~~-----~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
+ + .-++.|.+.|+..+..+ ....|+|...++++.+ ....++|.++-..++||..++|+|-
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 1 1 13578888888766422 1247888777775422 3446789999999999999999765
No 312
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=92.02 E-value=0.2 Score=47.09 Aligned_cols=103 Identities=16% Similarity=0.161 Sum_probs=79.0
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.+|||.=|++|.-++..+.+.+ ....+++.|.+++.+...+.+...++.. ..++....|+.
T Consensus 109 ~~l~vLealsAtGlrslRya~El~----------------~v~~v~AnD~~~~aV~~i~~Nv~~N~v~-~ive~~~~DA~ 171 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELP----------------GVRQVVANDLNENAVTSIQRNVELNGVE-DIVEPHHSDAN 171 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhc----------------chhhhcccCCCHHHHHHHHhhhhhcCch-hhcccccchHH
Confidence 456899999999999999999875 3478999999999999888887766554 56667777765
Q ss_pred cC----CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 163 AL----CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 163 ~~----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
.+ +.....||+|-+. -+-.+..+|..+.+.++.||.+.+.
T Consensus 172 ~lM~~~~~~~~~FDvIDLD----PyGs~s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 172 VLMYEHPMVAKFFDVIDLD----PYGSPSPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred HHHHhccccccccceEecC----CCCCccHHHHHHHHHhhcCCEEEEE
Confidence 54 2334679998532 2234577899999999999999864
No 313
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=91.60 E-value=0.69 Score=41.16 Aligned_cols=98 Identities=15% Similarity=0.046 Sum_probs=73.8
Q ss_pred CCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 83 PGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 83 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
++.+|.=+|.|. |.-+..++--. +++|+.+|.|.+.+.+....+. .++...-...
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~gl------------------gA~Vtild~n~~rl~~ldd~f~------~rv~~~~st~ 222 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGL------------------GADVTILDLNIDRLRQLDDLFG------GRVHTLYSTP 222 (371)
T ss_pred CCccEEEECCccccchHHHHHhcc------------------CCeeEEEecCHHHHhhhhHhhC------ceeEEEEcCH
Confidence 345788888886 66666666655 4999999999988877765543 3567776666
Q ss_pred ccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEE
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~ 204 (288)
.++...-.+.|+++..-.+..-..+.-..+++.+.||||+.++
T Consensus 223 ~~iee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 223 SNIEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred HHHHHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEE
Confidence 6554444579999987777777778888899999999999987
No 314
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=91.58 E-value=2.7 Score=37.37 Aligned_cols=97 Identities=21% Similarity=0.248 Sum_probs=60.4
Q ss_pred CCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEE
Q 036563 80 NPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVE 158 (288)
Q Consensus 80 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~ 158 (288)
...++.+||..|+|. |..+..+++.. +.++++++.++...+.+++. +.. .+..
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~------------------G~~V~~~~~s~~~~~~~~~~----g~~----~~~~ 215 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAM------------------GAAVIAVDIKEEKLELAKEL----GAD----EVLN 215 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc------------------CCEEEEEcCCHHHHHHHHHh----CCC----EEEc
Confidence 355677888888763 77777777775 36799999999887776442 211 1111
Q ss_pred cccccC-----CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 159 GDAEAL-----CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 159 ~d~~~~-----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
..-... ......+|+++-... ....+.++.+.|+++|.++....
T Consensus 216 ~~~~~~~~~~~~~~~~~~D~vid~~g------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 216 SLDDSPKDKKAAGLGGGFDVIFDFVG------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred CCCcCHHHHHHHhcCCCceEEEECCC------CHHHHHHHHHHhhcCCEEEEECC
Confidence 110000 123346898874321 24567888999999999987543
No 315
>PTZ00357 methyltransferase; Provisional
Probab=91.54 E-value=3 Score=41.21 Aligned_cols=104 Identities=13% Similarity=0.122 Sum_probs=65.4
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHh-hhcCCC------CCceEEE
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRA-LERGYP------DKSLLWV 157 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~-~~~~~~------~~~v~~~ 157 (288)
..|+-+|+|-|-+....++....-+ -..+++++|-+++.......+. ....|. ...|+++
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~g-------------vkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII 768 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALG-------------VRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVI 768 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcC-------------CcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEE
Confidence 3589999999998877777653111 1368999999966443333332 222332 1469999
Q ss_pred EcccccCCCCC-----------CCeeEEEeccccccccCH---HHHHHHHHhhccC----CcE
Q 036563 158 EGDAEALCFED-----------STMDGYTIAFGIRNVTHI---EKALAEAYRVLKR----GGR 202 (288)
Q Consensus 158 ~~d~~~~~~~~-----------~~~D~v~~~~~l~~~~~~---~~~l~~~~~~L~p----gG~ 202 (288)
..|+..+..+. +++|+|++ ..|..+-|. ...|.-+.+.||+ +|.
T Consensus 769 ~sDMR~W~~pe~~~s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 769 VADGRTIATAAENGSLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred eCcccccccccccccccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 99998874321 26899886 223333322 4567777777776 665
No 316
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=91.31 E-value=1.1 Score=40.73 Aligned_cols=100 Identities=21% Similarity=0.203 Sum_probs=74.3
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
..+|+|-=+|||.=++..+.+.+ .-+++.-|+||++.+..++++..+.. .+...+..|+..
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~-----------------~~~v~lNDisp~Avelik~Nv~~N~~--~~~~v~n~DAN~ 113 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETG-----------------VVKVVLNDISPKAVELIKENVRLNSG--EDAEVINKDANA 113 (380)
T ss_pred CeEEeecccccchhHhhhhhhcC-----------------ccEEEEccCCHHHHHHHHHHHHhcCc--ccceeecchHHH
Confidence 56899999999999999988874 23899999999999999999877622 345556666654
Q ss_pred CC-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 164 LC-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 164 ~~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+- .....||+|=+ .-+-.+..++....+.++.+|.+-+.
T Consensus 114 lm~~~~~~fd~IDi----DPFGSPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 114 LLHELHRAFDVIDI----DPFGSPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred HHHhcCCCccEEec----CCCCCCchHHHHHHHHhhcCCEEEEE
Confidence 42 12256888742 22234677888889999999998863
No 317
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=91.26 E-value=1.5 Score=39.73 Aligned_cols=98 Identities=15% Similarity=0.118 Sum_probs=57.6
Q ss_pred CCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeC---ChhHHHHHHHHhhhcCCCCCceEE
Q 036563 81 PFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDI---NPNMLNVGKKRALERGYPDKSLLW 156 (288)
Q Consensus 81 ~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~---s~~~~~~a~~~~~~~~~~~~~v~~ 156 (288)
..++.+||=+|+|. |.++..+++.. +.++++++. ++..++.+++. +.. .+..
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~------------------G~~vi~~~~~~~~~~~~~~~~~~----Ga~--~v~~ 225 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLR------------------GFEVYVLNRRDPPDPKADIVEEL----GAT--YVNS 225 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHc------------------CCeEEEEecCCCCHHHHHHHHHc----CCE--EecC
Confidence 34677899889875 66777777775 368888886 56655555432 211 1111
Q ss_pred EEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEecc
Q 036563 157 VEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 157 ~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
...+.... .....+|+|+-... ....+....+.|+++|.+++....
T Consensus 226 ~~~~~~~~-~~~~~~d~vid~~g------~~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 226 SKTPVAEV-KLVGEFDLIIEATG------VPPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred Cccchhhh-hhcCCCCEEEECcC------CHHHHHHHHHHccCCcEEEEEecC
Confidence 11111110 11235888874322 234678889999999999876543
No 318
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=90.91 E-value=0.51 Score=45.58 Aligned_cols=95 Identities=17% Similarity=0.052 Sum_probs=60.0
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.+...|||+||.+|.+...+.+.++ .+.-|+|+|+-|-- .. +++..++.|+
T Consensus 43 ~~a~~vlDLcaAPG~W~QVA~q~~p----------------v~slivGvDl~pik-----------p~--~~c~t~v~dI 93 (780)
T KOG1098|consen 43 EKAHVVLDLCAAPGGWLQVASQSMP----------------VGSLIVGVDLVPIK-----------PI--PNCDTLVEDI 93 (780)
T ss_pred cccchheeeccCCcHHHHHHHHhCC----------------CCceEEEeeeeecc-----------cC--Cccchhhhhh
Confidence 4566899999999999999999985 46789999986631 01 3344444444
Q ss_pred cc----CC----CCCCCeeEEEeccccc----cccC-------HHHHHHHHHhhccCCcEEEE
Q 036563 162 EA----LC----FEDSTMDGYTIAFGIR----NVTH-------IEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 162 ~~----~~----~~~~~~D~v~~~~~l~----~~~~-------~~~~l~~~~~~L~pgG~l~i 205 (288)
.. .+ ....+.|+|+...+-. +..| ....|+-....|+.||.++-
T Consensus 94 ttd~cr~~l~k~l~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvt 156 (780)
T KOG1098|consen 94 TTDECRSKLRKILKTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVT 156 (780)
T ss_pred hHHHHHHHHHHHHHhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcccc
Confidence 32 11 2234468887654421 1111 13356667788899999764
No 319
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=90.31 E-value=8.4 Score=32.51 Aligned_cols=103 Identities=16% Similarity=0.099 Sum_probs=61.4
Q ss_pred CCCCeEEEecCCcc----HHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 82 FPGMKHLDVAGGTG----DVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 82 ~~~~~vLDiG~G~G----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
.....|++..|+.| .++..++.+. -+++++++-+++..+...++.+...++. +.++|+
T Consensus 40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~-----------------TgGR~vCIvp~~~~~~~~~~~l~~~~~~-~~vEfv 101 (218)
T PF07279_consen 40 WNAKLIVEAWSSGGAISTTIALAAAARQ-----------------TGGRHVCIVPDEQSLSEYKKALGEAGLS-DVVEFV 101 (218)
T ss_pred ccceEEEEEecCCCchHhHHHHHHHHHh-----------------cCCeEEEEcCChhhHHHHHHHHhhcccc-ccceEE
Confidence 34456889866543 2333333333 3589999999988888888888777665 557888
Q ss_pred Ecccc-cCCCCCCCeeEEEeccccccccCHH-HHHHHHHhhccCCcEEEEEe
Q 036563 158 EGDAE-ALCFEDSTMDGYTIAFGIRNVTHIE-KALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 158 ~~d~~-~~~~~~~~~D~v~~~~~l~~~~~~~-~~l~~~~~~L~pgG~l~i~~ 207 (288)
.++.. .+-..-...|.++..--. .+.. ++|+.+. +.|.|.+++..
T Consensus 102 vg~~~e~~~~~~~~iDF~vVDc~~---~d~~~~vl~~~~--~~~~GaVVV~~ 148 (218)
T PF07279_consen 102 VGEAPEEVMPGLKGIDFVVVDCKR---EDFAARVLRAAK--LSPRGAVVVCY 148 (218)
T ss_pred ecCCHHHHHhhccCCCEEEEeCCc---hhHHHHHHHHhc--cCCCceEEEEe
Confidence 88743 321111357887764432 2333 4444322 44667766543
No 320
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=90.23 E-value=4.9 Score=36.07 Aligned_cols=94 Identities=13% Similarity=0.035 Sum_probs=58.7
Q ss_pred cCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 79 LNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 79 l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
...+++.+||=.|+|. |..+..+++.. +.++++++.++..++.+++. +.. ..+
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~------------------G~~vi~~~~~~~~~~~a~~~----Ga~----~vi 214 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQ------------------GATVHVMTRGAAARRLALAL----GAA----SAG 214 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHC------------------CCeEEEEeCChHHHHHHHHh----CCc----eec
Confidence 4556788999999764 55556666664 36789999988877766553 211 111
Q ss_pred EcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 158 EGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 158 ~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
+.... ..+.+|+++.... ....+....+.|+++|++++...
T Consensus 215 --~~~~~--~~~~~d~~i~~~~------~~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 215 --GAYDT--PPEPLDAAILFAP------AGGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred --ccccc--CcccceEEEECCC------cHHHHHHHHHhhCCCcEEEEEec
Confidence 11111 1234786653222 12468888899999999988654
No 321
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=90.20 E-value=2.5 Score=38.17 Aligned_cols=97 Identities=15% Similarity=0.143 Sum_probs=58.7
Q ss_pred CCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEc
Q 036563 81 PFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEG 159 (288)
Q Consensus 81 ~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~ 159 (288)
..++.+||=+|||. |..+..+++... ...+++++|.++..++.+++ . + ..... .
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~----------------g~~~vi~~~~~~~k~~~a~~-~---~----~~~~~-~ 215 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIY----------------PESKLVVFGKHQEKLDLFSF-A---D----ETYLI-D 215 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhc----------------CCCcEEEEeCcHhHHHHHhh-c---C----ceeeh-h
Confidence 45678999999875 666666665421 13679999999887777654 1 1 11111 1
Q ss_pred ccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEecc
Q 036563 160 DAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 160 d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
+ .. ....+|+|+=.-. . ......+....++|+++|+++++...
T Consensus 216 ~---~~-~~~g~d~viD~~G--~-~~~~~~~~~~~~~l~~~G~iv~~G~~ 258 (341)
T cd08237 216 D---IP-EDLAVDHAFECVG--G-RGSQSAINQIIDYIRPQGTIGLMGVS 258 (341)
T ss_pred h---hh-hccCCcEEEECCC--C-CccHHHHHHHHHhCcCCcEEEEEeec
Confidence 1 11 1114788863221 1 01345788889999999999876543
No 322
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=89.72 E-value=3.4 Score=37.72 Aligned_cols=99 Identities=20% Similarity=0.189 Sum_probs=59.8
Q ss_pred hcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCc-eEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 78 KLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEET-RIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
.....++.+||=.|+|. |..+..+++.. +. +++++|.++..++.+++. +.. .
T Consensus 186 ~~~i~~g~~VlV~G~G~vG~~a~~lak~~------------------G~~~Vi~~~~~~~r~~~a~~~----Ga~----~ 239 (371)
T cd08281 186 TAGVRPGQSVAVVGLGGVGLSALLGAVAA------------------GASQVVAVDLNEDKLALAREL----GAT----A 239 (371)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHc------------------CCCcEEEEcCCHHHHHHHHHc----CCc----e
Confidence 34456777888888764 66666666664 35 699999999888777542 211 1
Q ss_pred EEEccccc----C-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 156 WVEGDAEA----L-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 156 ~~~~d~~~----~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
++...-.+ + ....+.+|+++-.. .....+....+.|+++|.+++...
T Consensus 240 ~i~~~~~~~~~~i~~~~~~g~d~vid~~------G~~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 240 TVNAGDPNAVEQVRELTGGGVDYAFEMA------GSVPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred EeCCCchhHHHHHHHHhCCCCCEEEECC------CChHHHHHHHHHHhcCCEEEEEcc
Confidence 11111111 1 11122588887322 123467778889999999987654
No 323
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=89.49 E-value=1.9 Score=39.50 Aligned_cols=120 Identities=13% Similarity=0.048 Sum_probs=76.9
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHH-------HHH
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVG-------KKR 143 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a-------~~~ 143 (288)
....+.+.+...+++.-.|+|+|-|.....++...+ ..+-.|+++....-+.+ ++.
T Consensus 180 ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~-----------------~k~svG~eim~~pS~~a~~~~~~~kk~ 242 (419)
T KOG3924|consen 180 QLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAG-----------------CKKSVGFEIMDKPSQCAELNKEEFKKL 242 (419)
T ss_pred HHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhc-----------------cccccceeeecCcHHHHHHHHHHHHHH
Confidence 345567788888899999999999999988888763 34556666544332222 222
Q ss_pred hhhcCCCCCceEEEEcccccCC---CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 144 ALERGYPDKSLLWVEGDAEALC---FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 144 ~~~~~~~~~~v~~~~~d~~~~~---~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
....|-....+..+.+++.... ......++|+++++.-. ++...-+.++..-|++|-+++-.+.
T Consensus 243 ~k~fGk~~~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~Fd-p~L~lr~~eil~~ck~gtrIiS~~~ 309 (419)
T KOG3924|consen 243 MKHFGKKPNKIETIHGSFLDPKRVTEIQTEATVIFVNNVAFD-PELKLRSKEILQKCKDGTRIISSKP 309 (419)
T ss_pred HHHhCCCcCceeecccccCCHHHHHHHhhcceEEEEecccCC-HHHHHhhHHHHhhCCCcceEecccc
Confidence 2222322245777888765432 22345788888877433 3334445688888999999885443
No 324
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=89.43 E-value=4 Score=37.03 Aligned_cols=101 Identities=15% Similarity=0.118 Sum_probs=59.2
Q ss_pred cCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCc-eEEEEeCChhHHHHHHHHhhhcCCCCCceEE
Q 036563 79 LNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEET-RIYVCDINPNMLNVGKKRALERGYPDKSLLW 156 (288)
Q Consensus 79 l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~ 156 (288)
....++.+||=.|+|. |..+..+++.. +. +++++|.++...+.+++. +.. .-+..
T Consensus 172 ~~~~~g~~VlV~G~g~vG~~a~~~ak~~------------------G~~~Vi~~~~~~~~~~~~~~~----Ga~-~~i~~ 228 (358)
T TIGR03451 172 GGVKRGDSVAVIGCGGVGDAAIAGAALA------------------GASKIIAVDIDDRKLEWAREF----GAT-HTVNS 228 (358)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc------------------CCCeEEEEcCCHHHHHHHHHc----CCc-eEEcC
Confidence 3456788899888764 66666666665 24 599999998887777542 211 00111
Q ss_pred EEccccc-C-CC-CCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 157 VEGDAEA-L-CF-EDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 157 ~~~d~~~-~-~~-~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
...+... + .. ....+|+++-.- .. ...+....+.++++|.+++...
T Consensus 229 ~~~~~~~~i~~~~~~~g~d~vid~~-----g~-~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 229 SGTDPVEAIRALTGGFGADVVIDAV-----GR-PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCcCHHHHHHHHhCCCCCCEEEECC-----CC-HHHHHHHHHHhccCCEEEEECC
Confidence 1111100 0 01 123588886321 11 3456777889999999987654
No 325
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=89.34 E-value=3.8 Score=37.02 Aligned_cols=100 Identities=17% Similarity=0.198 Sum_probs=64.9
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
..+++|+-||-|.+..-+.+.. -.-+.++|+++..++.-+.+.. ...+...|+..
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag------------------f~~~~a~Eid~~a~~ty~~n~~-------~~~~~~~di~~ 57 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG------------------FEIVFANEIDPPAVATYKANFP-------HGDIILGDIKE 57 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC------------------CeEEEEEecCHHHHHHHHHhCC-------CCceeechHhh
Confidence 3589999999999997776652 2567789999998887777653 23456666655
Q ss_pred CC---CCCCCeeEEEecccccccc---------CHH----HHHHHHHhhccCCcEEEEEeccC
Q 036563 164 LC---FEDSTMDGYTIAFGIRNVT---------HIE----KALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 164 ~~---~~~~~~D~v~~~~~l~~~~---------~~~----~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
.. +....+|+++.....+.++ |.. --+.++...++| .++++|...
T Consensus 58 ~~~~~~~~~~~DvligGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~ 118 (328)
T COG0270 58 LDGEALRKSDVDVLIGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVK 118 (328)
T ss_pred cChhhccccCCCEEEeCCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCc
Confidence 42 1111689999887766553 221 134555666677 555555433
No 326
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=88.97 E-value=5.3 Score=35.75 Aligned_cols=103 Identities=16% Similarity=0.098 Sum_probs=59.2
Q ss_pred hhcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCce-EEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 77 SKLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETR-IYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
......++.+||=+|+|. |..+..+++.. +.+ +++++.+++..+.+++. +.. .-+
T Consensus 157 ~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~------------------G~~~vi~~~~~~~~~~~~~~~----ga~-~~i 213 (339)
T cd08239 157 RRVGVSGRDTVLVVGAGPVGLGALMLARAL------------------GAEDVIGVDPSPERLELAKAL----GAD-FVI 213 (339)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc------------------CCCEEEEECCCHHHHHHHHHh----CCC-EEE
Confidence 344556688888888764 55666666665 355 99999988877766442 211 001
Q ss_pred EEEEcccccC-CC-CCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 155 LWVEGDAEAL-CF-EDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 155 ~~~~~d~~~~-~~-~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.....+...+ .. ....+|+++-.. .....+....+.|+++|.+++...
T Consensus 214 ~~~~~~~~~~~~~~~~~~~d~vid~~------g~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 214 NSGQDDVQEIRELTSGAGADVAIECS------GNTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred cCCcchHHHHHHHhCCCCCCEEEECC------CCHHHHHHHHHHhhcCCEEEEEcC
Confidence 1111111111 11 123589887322 123456677889999999987544
No 327
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=88.88 E-value=0.31 Score=42.94 Aligned_cols=98 Identities=20% Similarity=0.275 Sum_probs=66.8
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+..|+|+=+|-|.++...+-..+ ...|+++|.+|..++..+..+..+++. .+.....+|-..
T Consensus 195 ~eviVDLYAGIGYFTlpflV~ag-----------------Ak~V~A~EwNp~svEaLrR~~~~N~V~-~r~~i~~gd~R~ 256 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAG-----------------AKTVFACEWNPWSVEALRRNAEANNVM-DRCRITEGDNRN 256 (351)
T ss_pred cchhhhhhcccceEEeehhhccC-----------------ccEEEEEecCHHHHHHHHHHHHhcchH-HHHHhhhccccc
Confidence 45799999999999984444432 478999999999999999888776554 445556666554
Q ss_pred CCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcE-EE
Q 036563 164 LCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGR-FL 204 (288)
Q Consensus 164 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~-l~ 204 (288)
.. +....|-|..... +.-++-...+.++|+|.|- ++
T Consensus 257 ~~-~~~~AdrVnLGLl----PSse~~W~~A~k~Lk~eggsil 293 (351)
T KOG1227|consen 257 PK-PRLRADRVNLGLL----PSSEQGWPTAIKALKPEGGSIL 293 (351)
T ss_pred cC-ccccchheeeccc----cccccchHHHHHHhhhcCCcEE
Confidence 43 4556777775443 3334444455677777443 44
No 328
>PRK11524 putative methyltransferase; Provisional
Probab=88.69 E-value=0.52 Score=41.67 Aligned_cols=54 Identities=19% Similarity=0.166 Sum_probs=38.4
Q ss_pred ceEEEEcccccC--CCCCCCeeEEEecccccc------cc----------CHHHHHHHHHhhccCCcEEEEE
Q 036563 153 SLLWVEGDAEAL--CFEDSTMDGYTIAFGIRN------VT----------HIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 153 ~v~~~~~d~~~~--~~~~~~~D~v~~~~~l~~------~~----------~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+-.++++|+.+. .++++++|+|+++..+.. .. -....+.++.++|||||.+++.
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 456788887664 356778999999665321 00 0246889999999999999874
No 329
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=88.59 E-value=0.46 Score=42.76 Aligned_cols=111 Identities=17% Similarity=0.115 Sum_probs=75.6
Q ss_pred HhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHH-------HHHHhhhcC
Q 036563 76 VSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNV-------GKKRALERG 148 (288)
Q Consensus 76 ~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~-------a~~~~~~~~ 148 (288)
.......+|+.|.|.=.|||.+....+.- ++.+.|.||+-.++.. .+.++++.+
T Consensus 201 AN~Amv~pGdivyDPFVGTGslLvsaa~F-------------------Ga~viGtDIDyr~vragrg~~~si~aNFkQYg 261 (421)
T KOG2671|consen 201 ANQAMVKPGDIVYDPFVGTGSLLVSAAHF-------------------GAYVIGTDIDYRTVRAGRGEDESIKANFKQYG 261 (421)
T ss_pred hhhhccCCCCEEecCccccCceeeehhhh-------------------cceeeccccchheeecccCCCcchhHhHHHhC
Confidence 34445578889999999999998777665 4899999999887763 244556665
Q ss_pred CCCCceEEEEcccccCCC-CCCCeeEEEeccccc------------------------cccC---------HHHHHHHHH
Q 036563 149 YPDKSLLWVEGDAEALCF-EDSTMDGYTIAFGIR------------------------NVTH---------IEKALAEAY 194 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~~-~~~~~D~v~~~~~l~------------------------~~~~---------~~~~l~~~~ 194 (288)
....=+.+..+|..+.++ ....||.|+|..... |.+. ....|.-..
T Consensus 262 ~~~~fldvl~~D~sn~~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss 341 (421)
T KOG2671|consen 262 SSSQFLDVLTADFSNPPLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSS 341 (421)
T ss_pred CcchhhheeeecccCcchhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhH
Confidence 432335667778776653 345799999965421 1111 123466777
Q ss_pred hhccCCcEEEE
Q 036563 195 RVLKRGGRFLC 205 (288)
Q Consensus 195 ~~L~pgG~l~i 205 (288)
+.|..||++++
T Consensus 342 ~~L~~ggrlv~ 352 (421)
T KOG2671|consen 342 RRLVDGGRLVF 352 (421)
T ss_pred hhhhcCceEEE
Confidence 88899999886
No 330
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=88.53 E-value=3.7 Score=35.83 Aligned_cols=99 Identities=17% Similarity=0.124 Sum_probs=58.5
Q ss_pred cCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 79 LNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 79 l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
....++.+||=+|+|+ |..+..+++..+ ...++++|.++..++.+++. +.. .++
T Consensus 116 ~~~~~g~~VlV~G~G~vG~~~~~~ak~~G-----------------~~~Vi~~~~~~~r~~~a~~~----Ga~----~~i 170 (280)
T TIGR03366 116 AGDLKGRRVLVVGAGMLGLTAAAAAAAAG-----------------AARVVAADPSPDRRELALSF----GAT----ALA 170 (280)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcC-----------------CCEEEEECCCHHHHHHHHHc----CCc----Eec
Confidence 3344678899888865 666666666653 13488899888877766553 111 111
Q ss_pred Ec-cc-ccC-CC-CCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 158 EG-DA-EAL-CF-EDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 158 ~~-d~-~~~-~~-~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.. +. ... .. ....+|+++-.. .....++...+.|+++|++++...
T Consensus 171 ~~~~~~~~~~~~~~~~g~d~vid~~------G~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 171 EPEVLAERQGGLQNGRGVDVALEFS------GATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred CchhhHHHHHHHhCCCCCCEEEECC------CChHHHHHHHHHhcCCCEEEEecc
Confidence 10 10 000 01 123588886322 124467788899999999997654
No 331
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=88.32 E-value=2.9 Score=35.58 Aligned_cols=98 Identities=28% Similarity=0.352 Sum_probs=57.9
Q ss_pred CCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcc
Q 036563 82 FPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGD 160 (288)
Q Consensus 82 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d 160 (288)
.++.+||-.|+|+ |..+..+++.. +.++++++.++...+.+++. +.. .-+.....+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~------------------g~~v~~~~~~~~~~~~~~~~----g~~-~~~~~~~~~ 189 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA------------------GARVIVTDRSDEKLELAKEL----GAD-HVIDYKEED 189 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc------------------CCeEEEEcCCHHHHHHHHHh----CCc-eeccCCcCC
Confidence 5678999999986 55666666654 37899999988776666432 110 001101001
Q ss_pred ccc-C-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 161 AEA-L-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 161 ~~~-~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
... . ......+|+++.... . ...+..+.+.|+++|.++....
T Consensus 190 ~~~~~~~~~~~~~d~vi~~~~-----~-~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 190 LEEELRLTGGGGADVVIDAVG-----G-PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred HHHHHHHhcCCCCCEEEECCC-----C-HHHHHHHHHhcccCCEEEEEcc
Confidence 000 0 112346899885332 1 1456777889999999987543
No 332
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=88.11 E-value=1 Score=33.55 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=18.2
Q ss_pred CCCeEEEecCCccHHHHHHHHh
Q 036563 83 PGMKHLDVAGGTGDVAFRILDT 104 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~ 104 (288)
+...-+|+|||.|.+...+...
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E 79 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE 79 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC
Confidence 4557999999999998777776
No 333
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=87.81 E-value=2.4 Score=31.03 Aligned_cols=77 Identities=17% Similarity=0.203 Sum_probs=49.2
Q ss_pred CHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHH
Q 036563 185 HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISD 264 (288)
Q Consensus 185 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 264 (288)
|..++|.++....+ |.+++ ...|..+.+..++. +|+++.+....-. ......+++++.+.+
T Consensus 12 d~~~~l~~La~~t~--~~~if--TfAP~T~~L~~m~~---------iG~lFP~~dRsp~------i~~~~e~~l~~~l~~ 72 (97)
T PF07109_consen 12 DAAQMLAHLASRTR--GSLIF--TFAPRTPLLALMHA---------IGKLFPRPDRSPR------IYPHREEDLRRALAA 72 (97)
T ss_pred HHHHHHHHHHHhcc--CcEEE--EECCCCHHHHHHHH---------HhccCCCCCCCCc------EEEeCHHHHHHHHHh
Confidence 56677777776543 55654 33455555544433 5666554432211 114478999999999
Q ss_pred cCCcEEEEEEeeCCee
Q 036563 265 AGFQKVEYENLVGGVV 280 (288)
Q Consensus 265 aGf~~v~~~~~~~~~~ 280 (288)
+||++...+....|++
T Consensus 73 ~g~~~~r~~ris~gFY 88 (97)
T PF07109_consen 73 AGWRIGRTERISSGFY 88 (97)
T ss_pred CCCeeeecccccCcCh
Confidence 9999999888877764
No 334
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=87.03 E-value=0.81 Score=36.75 Aligned_cols=43 Identities=21% Similarity=0.092 Sum_probs=33.4
Q ss_pred CCCeeEEEecccccccc-----C------HHHHHHHHHhhccCCcEEEEEeccC
Q 036563 168 DSTMDGYTIAFGIRNVT-----H------IEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 168 ~~~~D~v~~~~~l~~~~-----~------~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
.++||.+.+..+++|+- | ..+.+.++.++|||||.+++.-...
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG 114 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVG 114 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecC
Confidence 45799999998887762 2 2568899999999999999754433
No 335
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=87.00 E-value=3.4 Score=36.75 Aligned_cols=88 Identities=18% Similarity=0.149 Sum_probs=54.6
Q ss_pred CCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 83 PGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 83 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
++.++|=+|||. |.++..+++..+ ...+.++|.++..++.+... . .+ |.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G-----------------~~~v~~~~~~~~rl~~a~~~----~-------~i--~~ 193 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAG-----------------GSPPAVWETNPRRRDGATGY----E-------VL--DP 193 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcC-----------------CceEEEeCCCHHHHHhhhhc----c-------cc--Ch
Confidence 456788888875 777777777753 23477788887766655321 0 01 11
Q ss_pred ccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
... ....+|+|+-.- .....+..+.+.|+++|++++...
T Consensus 194 ~~~--~~~g~Dvvid~~------G~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 194 EKD--PRRDYRAIYDAS------GDPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred hhc--cCCCCCEEEECC------CCHHHHHHHHHhhhcCcEEEEEee
Confidence 110 123588887432 224467888899999999997654
No 336
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=85.64 E-value=3.2 Score=36.16 Aligned_cols=85 Identities=16% Similarity=0.179 Sum_probs=58.6
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.+++..+|+|+-+|.++-.+.+.. ..|+++|- ..|.+..- .. +.++....|.
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~-------------------m~V~aVDn-g~ma~sL~----dt----g~v~h~r~DG 261 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRN-------------------MRVYAVDN-GPMAQSLM----DT----GQVTHLREDG 261 (358)
T ss_pred cCCceeeecccCCCccchhhhhcc-------------------eEEEEecc-chhhhhhh----cc----cceeeeeccC
Confidence 468999999999999999998874 89999995 44433221 11 5688888887
Q ss_pred ccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhcc
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLK 198 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~ 198 (288)
.++.......|-.+|..+ ..+.++-.-+...|.
T Consensus 262 fk~~P~r~~idWmVCDmV----EkP~rv~~li~~Wl~ 294 (358)
T COG2933 262 FKFRPTRSNIDWMVCDMV----EKPARVAALIAKWLV 294 (358)
T ss_pred cccccCCCCCceEEeehh----cCcHHHHHHHHHHHH
Confidence 776444567898888776 334444444444444
No 337
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=85.12 E-value=8 Score=32.86 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=49.9
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
..+.++...+.-.+.-|.+||.|+|.++..+++.. ..++..++.++..+.-.+...+...
T Consensus 38 lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~------------------~~RL~vVE~D~RFip~LQ~L~EAa~-- 97 (326)
T KOG0821|consen 38 LTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNAD------------------VARLLVVEKDTRFIPGLQMLSEAAP-- 97 (326)
T ss_pred HHHHHHHhccccccceeEEecCCCCchhHHHHhcc------------------hhheeeeeeccccChHHHHHhhcCC--
Confidence 33556666665556789999999999999998874 3678888888877765554443322
Q ss_pred CCceEEEEccccc
Q 036563 151 DKSLLWVEGDAEA 163 (288)
Q Consensus 151 ~~~v~~~~~d~~~ 163 (288)
.+..+..+|+..
T Consensus 98 -~~~~IHh~D~LR 109 (326)
T KOG0821|consen 98 -GKLRIHHGDVLR 109 (326)
T ss_pred -cceEEeccccce
Confidence 356666666644
No 338
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=84.82 E-value=6.9 Score=34.94 Aligned_cols=94 Identities=23% Similarity=0.272 Sum_probs=56.5
Q ss_pred CCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCc-eEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEc
Q 036563 82 FPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEET-RIYVCDINPNMLNVGKKRALERGYPDKSLLWVEG 159 (288)
Q Consensus 82 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~ 159 (288)
.++.+||-.|||. |..+..+++..+ . ++++++.++...+.+++. +.. .++..
T Consensus 164 ~~~~~VLI~g~g~vG~~~~~lak~~G------------------~~~v~~~~~s~~~~~~~~~~----g~~----~vi~~ 217 (339)
T cd08232 164 LAGKRVLVTGAGPIGALVVAAARRAG------------------AAEIVATDLADAPLAVARAM----GAD----ETVNL 217 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC------------------CcEEEEECCCHHHHHHHHHc----CCC----EEEcC
Confidence 3677888888765 666666666652 4 789999888877755432 111 11111
Q ss_pred c---cccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 160 D---AEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 160 d---~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
+ ..........+|+++-... ....++...+.|+++|.++...
T Consensus 218 ~~~~~~~~~~~~~~vd~vld~~g------~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 218 ARDPLAAYAADKGDFDVVFEASG------APAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred CchhhhhhhccCCCccEEEECCC------CHHHHHHHHHHHhcCCEEEEEe
Confidence 1 1111111234888875322 1345778899999999998653
No 339
>PLN02740 Alcohol dehydrogenase-like
Probab=84.73 E-value=10 Score=34.84 Aligned_cols=99 Identities=19% Similarity=0.176 Sum_probs=59.8
Q ss_pred hcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCc-eEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 78 KLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEET-RIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
.....++.+||=+|+|. |..+..+++..+ . +++++|.+++.++.+++. +.. .
T Consensus 193 ~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G------------------~~~Vi~~~~~~~r~~~a~~~----Ga~----~ 246 (381)
T PLN02740 193 TANVQAGSSVAIFGLGAVGLAVAEGARARG------------------ASKIIGVDINPEKFEKGKEM----GIT----D 246 (381)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHCC------------------CCcEEEEcCChHHHHHHHHc----CCc----E
Confidence 34556788999999875 666666666653 5 699999999888877542 211 1
Q ss_pred EEEcc-----ccc-C-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCC-cEEEEEec
Q 036563 156 WVEGD-----AEA-L-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRG-GRFLCLEL 208 (288)
Q Consensus 156 ~~~~d-----~~~-~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 208 (288)
++... ... + ....+.+|+++-.. .....+......++++ |.++++..
T Consensus 247 ~i~~~~~~~~~~~~v~~~~~~g~dvvid~~------G~~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 247 FINPKDSDKPVHERIREMTGGGVDYSFECA------GNVEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred EEecccccchHHHHHHHHhCCCCCEEEECC------CChHHHHHHHHhhhcCCCEEEEEcc
Confidence 22111 111 1 11122588886422 2234677777888886 98877554
No 340
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=84.28 E-value=2.9 Score=37.11 Aligned_cols=70 Identities=14% Similarity=0.174 Sum_probs=50.4
Q ss_pred eEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCC
Q 036563 86 KHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC 165 (288)
Q Consensus 86 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~ 165 (288)
+++|+-||-|.+..-+.+.. ...+.++|+++.+.+.-+.+. + ....+|+.++.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag------------------~~~~~a~e~~~~a~~~y~~N~-------~--~~~~~Di~~~~ 54 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG------------------FEVVWAVEIDPDACETYKANF-------P--EVICGDITEID 54 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT------------------EEEEEEEESSHHHHHHHHHHH-------T--EEEESHGGGCH
T ss_pred cEEEEccCccHHHHHHHhcC------------------cEEEEEeecCHHHHHhhhhcc-------c--ccccccccccc
Confidence 79999999999998887763 256789999999888877776 2 66778887763
Q ss_pred ---CCCCCeeEEEeccccccc
Q 036563 166 ---FEDSTMDGYTIAFGIRNV 183 (288)
Q Consensus 166 ---~~~~~~D~v~~~~~l~~~ 183 (288)
++. .+|+++.....+.+
T Consensus 55 ~~~l~~-~~D~l~ggpPCQ~f 74 (335)
T PF00145_consen 55 PSDLPK-DVDLLIGGPPCQGF 74 (335)
T ss_dssp HHHHHH-T-SEEEEE---TTT
T ss_pred cccccc-cceEEEeccCCceE
Confidence 443 59999987765544
No 341
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=83.96 E-value=6.1 Score=36.96 Aligned_cols=88 Identities=14% Similarity=0.153 Sum_probs=57.2
Q ss_pred CCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcc
Q 036563 82 FPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGD 160 (288)
Q Consensus 82 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d 160 (288)
.++.+|+=+|+|. |......++.. +++++++|.++..+..+++. + .... +
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~------------------Ga~ViV~d~d~~R~~~A~~~----G-----~~~~--~ 250 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQ------------------GARVIVTEVDPICALQAAME----G-----YEVM--T 250 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC------------------CCEEEEEECChhhHHHHHhc----C-----CEEc--c
Confidence 4678999999997 77666666665 37899999998877666542 2 1211 1
Q ss_pred cccCCCCCCCeeEEEeccccccccCHHHHHHH-HHhhccCCcEEEEEe
Q 036563 161 AEALCFEDSTMDGYTIAFGIRNVTHIEKALAE-AYRVLKRGGRFLCLE 207 (288)
Q Consensus 161 ~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~-~~~~L~pgG~l~i~~ 207 (288)
..+. . ...|+|+... .....+.. ..+.+++||.++.+.
T Consensus 251 ~~e~-v--~~aDVVI~at------G~~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 251 MEEA-V--KEGDIFVTTT------GNKDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred HHHH-H--cCCCEEEECC------CCHHHHHHHHHhcCCCCcEEEEeC
Confidence 1111 1 2479887532 22345554 488999999998754
No 342
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=83.79 E-value=0.71 Score=42.69 Aligned_cols=64 Identities=23% Similarity=0.249 Sum_probs=52.5
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcc
Q 036563 81 PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGD 160 (288)
Q Consensus 81 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d 160 (288)
.+++..|-|+-||-|-++..++.. ++.+++.|.++++++..+.++.-+.+...++..+..|
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK-------------------~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmd 307 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK-------------------GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMD 307 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc-------------------CcEEEecCCCHHHHHHHHHhccccccchhheeeeccc
Confidence 356778999999999999888886 4999999999999999999987776663447777776
Q ss_pred ccc
Q 036563 161 AEA 163 (288)
Q Consensus 161 ~~~ 163 (288)
+..
T Consensus 308 a~~ 310 (495)
T KOG2078|consen 308 AKD 310 (495)
T ss_pred HHH
Confidence 543
No 343
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=83.68 E-value=2.6 Score=38.60 Aligned_cols=86 Identities=16% Similarity=0.212 Sum_probs=63.9
Q ss_pred HhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 76 VSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 76 ~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
...+.+.++.+|+|.+|.+|.-+.+++.... +..+++++|.+....+..++.+...+.. .+.
T Consensus 206 A~ll~p~~g~~v~d~caapg~KTsH~a~i~~----------------n~gki~afe~d~~r~~tl~~~l~~ag~~--~~~ 267 (413)
T KOG2360|consen 206 AHLLDPRPGSRVIDTCAAPGNKTSHLAAIMR----------------NQGKIYAFERDAKRAATLRKLLKIAGVS--IVE 267 (413)
T ss_pred hhhcCCCCCCceeeeccccccchhhHHHHhh----------------ccCCcchhhhhhHHHHHHHHHHHHcCCC--ccc
Confidence 4455677889999999999999999988875 4689999999999999888888877764 566
Q ss_pred EEEcccccCCCCC--CCeeEEEeccc
Q 036563 156 WVEGDAEALCFED--STMDGYTIAFG 179 (288)
Q Consensus 156 ~~~~d~~~~~~~~--~~~D~v~~~~~ 179 (288)
...+|+...+.+. .....+++...
T Consensus 268 ~~~~df~~t~~~~~~~~v~~iL~Dps 293 (413)
T KOG2360|consen 268 SVEGDFLNTATPEKFRDVTYILVDPS 293 (413)
T ss_pred cccccccCCCCcccccceeEEEeCCC
Confidence 6678877642111 22445555444
No 344
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=83.41 E-value=8.6 Score=35.01 Aligned_cols=96 Identities=24% Similarity=0.231 Sum_probs=53.7
Q ss_pred CCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEc-
Q 036563 82 FPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEG- 159 (288)
Q Consensus 82 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~- 159 (288)
.++.+||=.|+|. |..+..+++.. +.++++++.++.....+.+. .+.. .++..
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~------------------Ga~vi~~~~~~~~~~~~~~~---~Ga~----~vi~~~ 236 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAF------------------GLKVTVISSSSNKEDEAINR---LGAD----SFLVST 236 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC------------------CCEEEEEeCCcchhhhHHHh---CCCc----EEEcCC
Confidence 4677888888875 66777777765 36788888776543322222 2211 11110
Q ss_pred ccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 160 DAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 160 d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
+...+....+.+|+++-... ....+....+.|+++|.++.+..
T Consensus 237 ~~~~~~~~~~~~D~vid~~g------~~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 237 DPEKMKAAIGTMDYIIDTVS------AVHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred CHHHHHhhcCCCCEEEECCC------CHHHHHHHHHHhcCCcEEEEeCC
Confidence 10111101124788763221 23367778899999999987643
No 345
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=83.33 E-value=2.8 Score=39.53 Aligned_cols=112 Identities=20% Similarity=0.143 Sum_probs=71.9
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+.++|-+|-|.|.+...+...+ +...+++++++|.|++.+.+.+.-..- .+..+...|...
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~-----------------p~~~i~~ve~dP~~l~va~q~f~f~q~--~r~~V~i~dGl~ 356 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSL-----------------PKFQITAVEIDPEMLEVATQYFGFMQS--DRNKVHIADGLD 356 (482)
T ss_pred cCcEEEEecCCCccccceeeec-----------------CccceeEEEEChhHhhccHhhhchhhh--hhhhhhHhhchH
Confidence 4578888999999988888777 468999999999999999887542210 111122122211
Q ss_pred C-------CCCCCCeeEEEeccc---cccccC------HHHHHHHHHhhccCCcEEEEEeccCCChHH
Q 036563 164 L-------CFEDSTMDGYTIAFG---IRNVTH------IEKALAEAYRVLKRGGRFLCLELSHVDIPV 215 (288)
Q Consensus 164 ~-------~~~~~~~D~v~~~~~---l~~~~~------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~ 215 (288)
. .-.+..||+++..-. .|.... ...+|..++..|.|.|.+++. ...++.++
T Consensus 357 ~~~~~~k~~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~in-lv~r~~~~ 423 (482)
T KOG2352|consen 357 FLQRTAKSQQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIIN-LVTRNSSF 423 (482)
T ss_pred HHHHHhhccccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEE-EecCCcch
Confidence 1 123456898876322 222221 255899999999999999764 33444443
No 346
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=83.11 E-value=11 Score=34.10 Aligned_cols=102 Identities=19% Similarity=0.219 Sum_probs=61.1
Q ss_pred hcCCCCCCeEEEecC-C-ccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 78 KLNPFPGMKHLDVAG-G-TGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~-G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
.....++.+||=.|+ | .|..+..+++.. +.++++++.++...+.+++.+ +.. .-+.
T Consensus 153 ~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~------------------G~~Vi~~~~~~~k~~~~~~~l---Ga~-~vi~ 210 (348)
T PLN03154 153 VCSPKKGDSVFVSAASGAVGQLVGQLAKLH------------------GCYVVGSAGSSQKVDLLKNKL---GFD-EAFN 210 (348)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHc------------------CCEEEEEcCCHHHHHHHHHhc---CCC-EEEE
Confidence 345567889998887 3 577888888875 378899988887766655322 211 0111
Q ss_pred EEEc-cccc-C-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 156 WVEG-DAEA-L-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 156 ~~~~-d~~~-~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.... +... + ....+.+|+++-... ...+....+.|+++|.+++...
T Consensus 211 ~~~~~~~~~~i~~~~~~gvD~v~d~vG-------~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 211 YKEEPDLDAALKRYFPEGIDIYFDNVG-------GDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred CCCcccHHHHHHHHCCCCcEEEEECCC-------HHHHHHHHHHhccCCEEEEECc
Confidence 1111 1111 1 111235888873221 2367788899999999987543
No 347
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=83.09 E-value=2.8 Score=38.55 Aligned_cols=100 Identities=14% Similarity=0.017 Sum_probs=53.8
Q ss_pred CCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 83 PGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 83 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
++.+|+=+|+|. |..+...+... +.+++++|.++..++.+...... .+.....+.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l------------------Ga~V~v~d~~~~~~~~l~~~~g~------~v~~~~~~~ 221 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL------------------GATVTILDINIDRLRQLDAEFGG------RIHTRYSNA 221 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC------------------CCeEEEEECCHHHHHHHHHhcCc------eeEeccCCH
Confidence 456799998874 66666666654 36899999988766555433211 111111111
Q ss_pred ccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
..+...-..+|+|+..........+.-+-++..+.++|++.++-+
T Consensus 222 ~~l~~~l~~aDvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 222 YEIEDAVKRADLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred HHHHHHHccCCEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEEE
Confidence 111101135899986543211111211224555668999887743
No 348
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=82.96 E-value=4.3 Score=36.33 Aligned_cols=76 Identities=9% Similarity=0.000 Sum_probs=52.0
Q ss_pred EEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC---
Q 036563 88 LDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL--- 164 (288)
Q Consensus 88 LDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~--- 164 (288)
+|||.|.-.+-..+-... .+....++|++....+.++++..+.++. ..+.++.....+-
T Consensus 107 iDIgtgasci~~llg~rq-----------------~n~~f~~teidd~s~~~a~snV~qn~ls-s~ikvV~~~~~ktll~ 168 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQ-----------------NNWYFLATEIDDMSFNYAKSNVEQNNLS-SLIKVVKVEPQKTLLM 168 (419)
T ss_pred eeccCchhhhHHhhhchh-----------------ccceeeeeeccccccchhhccccccccc-cceeeEEecchhhcch
Confidence 688877765544443332 3588999999999999999999888876 5565555533221
Q ss_pred ----CCCCCCeeEEEeccccc
Q 036563 165 ----CFEDSTMDGYTIAFGIR 181 (288)
Q Consensus 165 ----~~~~~~~D~v~~~~~l~ 181 (288)
..++..||.+.|+..+.
T Consensus 169 d~~~~~~e~~ydFcMcNPPFf 189 (419)
T KOG2912|consen 169 DALKEESEIIYDFCMCNPPFF 189 (419)
T ss_pred hhhccCccceeeEEecCCchh
Confidence 12344699999988753
No 349
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=82.62 E-value=14 Score=33.26 Aligned_cols=101 Identities=15% Similarity=0.169 Sum_probs=57.2
Q ss_pred CCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCce-EEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 80 NPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETR-IYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 80 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
...++.+||=.|+|+ |..+..+++..+ .+ +++++.++..++.+++. +.. .-+...
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G------------------~~~v~~~~~~~~~~~~~~~~----Ga~-~~i~~~ 213 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVALG------------------AKSVTAIDINSEKLALAKSL----GAM-QTFNSR 213 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC------------------CCeEEEECCCHHHHHHHHHc----CCc-eEecCc
Confidence 445677888888865 666666666653 54 78899888877766432 211 001111
Q ss_pred EcccccC-C-CCCCCee-EEEeccccccccCHHHHHHHHHhhccCCcEEEEEecc
Q 036563 158 EGDAEAL-C-FEDSTMD-GYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 158 ~~d~~~~-~-~~~~~~D-~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
..+.... . .....+| +++- .. .....+....+.|+++|.+++....
T Consensus 214 ~~~~~~~~~~~~~~~~d~~v~d-----~~-G~~~~~~~~~~~l~~~G~iv~~G~~ 262 (347)
T PRK10309 214 EMSAPQIQSVLRELRFDQLILE-----TA-GVPQTVELAIEIAGPRAQLALVGTL 262 (347)
T ss_pred ccCHHHHHHHhcCCCCCeEEEE-----CC-CCHHHHHHHHHHhhcCCEEEEEccC
Confidence 1111111 0 1123466 5442 11 2245778888999999999986543
No 350
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=82.44 E-value=4.2 Score=37.31 Aligned_cols=41 Identities=10% Similarity=0.105 Sum_probs=33.4
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHH
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKK 142 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~ 142 (288)
-..++|+|+|.|.++..+.-.+ +..|.++|-|....+.|++
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y------------------~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGY------------------GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhcc------------------CceEEEeccchHHHHHHHH
Confidence 3579999999999999888776 4899999998766665543
No 351
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=82.12 E-value=13 Score=30.31 Aligned_cols=137 Identities=18% Similarity=0.096 Sum_probs=67.0
Q ss_pred CceEEEEeCChhHHHHHHHHhhhc-------C-CC-------CCceEEEEcccccCCCCCCCeeEEEeccccccccCHHH
Q 036563 124 ETRIYVCDINPNMLNVGKKRALER-------G-YP-------DKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEK 188 (288)
Q Consensus 124 ~~~v~~~D~s~~~~~~a~~~~~~~-------~-~~-------~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~ 188 (288)
+.+|+.+|.+++.++.+++.+... + .. ..++. ...|+.... ..|+|+=.- .+..+-...
T Consensus 22 G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~~----~adlViEai-~E~l~~K~~ 95 (180)
T PF02737_consen 22 GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEAV----DADLVIEAI-PEDLELKQE 95 (180)
T ss_dssp TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGGC----TESEEEE-S--SSHHHHHH
T ss_pred CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHHh----hhheehhhc-cccHHHHHH
Confidence 489999999999998887765541 1 10 01233 234444331 478886432 222223467
Q ss_pred HHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCC----ChHHHHHHHHH
Q 036563 189 ALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFP----PQEKFAAMISD 264 (288)
Q Consensus 189 ~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~ 264 (288)
+++++.+.+.|+-.|.....+.+ ...+..... .-.+.+|-.+..+.. ...+.+-+.... ..+.+.+++++
T Consensus 96 ~~~~l~~~~~~~~ilasnTSsl~----i~~la~~~~-~p~R~ig~Hf~~P~~-~~~lVEvv~~~~T~~~~~~~~~~~~~~ 169 (180)
T PF02737_consen 96 LFAELDEICPPDTILASNTSSLS----ISELAAALS-RPERFIGMHFFNPPH-LMPLVEVVPGPKTSPETVDRVRALLRS 169 (180)
T ss_dssp HHHHHHCCS-TTSEEEE--SSS-----HHHHHTTSS-TGGGEEEEEE-SSTT-T--EEEEEE-TTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCceEEecCCCCC----HHHHHhccC-cCceEEEEecccccc-cCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 89999999999988875433322 222222111 222233333332221 111111111111 34667788888
Q ss_pred cCCcEEEE
Q 036563 265 AGFQKVEY 272 (288)
Q Consensus 265 aGf~~v~~ 272 (288)
.|...+.+
T Consensus 170 ~gk~pv~v 177 (180)
T PF02737_consen 170 LGKTPVVV 177 (180)
T ss_dssp TT-EEEEE
T ss_pred CCCEEEEe
Confidence 88887766
No 352
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=81.59 E-value=27 Score=33.94 Aligned_cols=91 Identities=11% Similarity=0.039 Sum_probs=54.3
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL 164 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~ 164 (288)
.+|+=+||| ..+..+++.... .+.+++.+|.+++..+.+++ .....+.+|+.+.
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~---------------~g~~vvvId~d~~~~~~~~~---------~g~~~i~GD~~~~ 471 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLA---------------AGIPLVVIETSRTRVDELRE---------RGIRAVLGNAANE 471 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHH---------------CCCCEEEEECCHHHHHHHHH---------CCCeEEEcCCCCH
Confidence 356655555 555566665421 24789999999988777754 2467888998764
Q ss_pred C----CCCCCeeEEEeccccccccCHH-HHHHHHHhhccCCcEEEE
Q 036563 165 C----FEDSTMDGYTIAFGIRNVTHIE-KALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 165 ~----~~~~~~D~v~~~~~l~~~~~~~-~~l~~~~~~L~pgG~l~i 205 (288)
. ..-+++|.+++.-. +|.. ..+-.+.+...|+..++.
T Consensus 472 ~~L~~a~i~~a~~viv~~~----~~~~~~~iv~~~~~~~~~~~iia 513 (558)
T PRK10669 472 EIMQLAHLDCARWLLLTIP----NGYEAGEIVASAREKRPDIEIIA 513 (558)
T ss_pred HHHHhcCccccCEEEEEcC----ChHHHHHHHHHHHHHCCCCeEEE
Confidence 2 22346786664322 1122 123334455677777775
No 353
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=81.13 E-value=1.1 Score=37.72 Aligned_cols=93 Identities=23% Similarity=0.298 Sum_probs=66.7
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
..+..+..+.+.++...+|.--|.|.-+..+++.+ +..++++.|.+|.+.+.+.-...+. .+
T Consensus 31 m~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~-----------------se~k~yalDrDP~A~~La~~~s~el-~~ 92 (303)
T KOG2782|consen 31 MLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKH-----------------SELKNYALDRDPVARKLAHFHSDEL-MH 92 (303)
T ss_pred ehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhC-----------------cHhhhhhhccChHHHHHHHHhhHhh-cc
Confidence 44677888988899999999999999999999998 4688999999998888776655322 11
Q ss_pred CCceEEEEcccccC-------CCCCCCeeEEEecccccc
Q 036563 151 DKSLLWVEGDAEAL-------CFEDSTMDGYTIAFGIRN 182 (288)
Q Consensus 151 ~~~v~~~~~d~~~~-------~~~~~~~D~v~~~~~l~~ 182 (288)
+.+..+.+.+..+ ...+.++|-|++.+....
T Consensus 93 -~~l~a~Lg~Fs~~~~l~~~~gl~~~~vDGiLmDlGcSS 130 (303)
T KOG2782|consen 93 -PTLKAVLGNFSYIKSLIADTGLLDVGVDGILMDLGCSS 130 (303)
T ss_pred -hhHHHHHhhhHHHHHHHHHhCCCcCCcceEEeecCccc
Confidence 2333333333332 245677888888766543
No 354
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=80.22 E-value=9 Score=29.49 Aligned_cols=89 Identities=17% Similarity=0.108 Sum_probs=46.1
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
..+|+|+|-|.-.-....++.. +..++++|+++.. + . ..+.++..|+.+
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~------------------G~dV~~tDi~~~~---a----~------~g~~~v~DDif~ 62 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKER------------------GFDVIATDINPRK---A----P------EGVNFVVDDIFN 62 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHH------------------S-EEEEE-SS-S-----------------STTEE---SSS
T ss_pred CCcEEEECcCCCHHHHHHHHHc------------------CCcEEEEECcccc---c----c------cCcceeeecccC
Confidence 3599999999866555555554 3899999998871 1 1 257788888876
Q ss_pred CCCC-CCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 164 LCFE-DSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 164 ~~~~-~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.... =...|+|.+... .++....+.++.+.+ |.-+++..+
T Consensus 63 P~l~iY~~a~lIYSiRP---P~El~~~il~lA~~v--~adlii~pL 103 (127)
T PF03686_consen 63 PNLEIYEGADLIYSIRP---PPELQPPILELAKKV--GADLIIRPL 103 (127)
T ss_dssp --HHHHTTEEEEEEES-----TTSHHHHHHHHHHH--T-EEEEE-B
T ss_pred CCHHHhcCCcEEEEeCC---ChHHhHHHHHHHHHh--CCCEEEECC
Confidence 5311 125899987443 345556666666543 566665433
No 355
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=80.17 E-value=25 Score=32.03 Aligned_cols=102 Identities=17% Similarity=0.148 Sum_probs=59.8
Q ss_pred hcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCc-eEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 78 KLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEET-RIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
.....++.+||=.|+|. |..+..+++..+ . +++++|.++..++.+++. +.. .-+.
T Consensus 180 ~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G------------------~~~Vi~~~~~~~~~~~a~~~----Ga~-~~i~ 236 (368)
T TIGR02818 180 TAKVEEGDTVAVFGLGGIGLSVIQGARMAK------------------ASRIIAIDINPAKFELAKKL----GAT-DCVN 236 (368)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC------------------CCeEEEEcCCHHHHHHHHHh----CCC-eEEc
Confidence 34556788899889865 666677777653 5 799999999888777542 211 0011
Q ss_pred EEE--ccccc-C-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCC-cEEEEEec
Q 036563 156 WVE--GDAEA-L-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRG-GRFLCLEL 208 (288)
Q Consensus 156 ~~~--~d~~~-~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 208 (288)
... .+... + ....+.+|+++-.- .....+....+.++++ |.++++..
T Consensus 237 ~~~~~~~~~~~v~~~~~~g~d~vid~~------G~~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 237 PNDYDKPIQEVIVEITDGGVDYSFECI------GNVNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred ccccchhHHHHHHHHhCCCCCEEEECC------CCHHHHHHHHHHhhcCCCeEEEEec
Confidence 110 01100 0 01122578876321 1234577778889886 99887654
No 356
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=79.42 E-value=20 Score=31.72 Aligned_cols=99 Identities=25% Similarity=0.259 Sum_probs=58.0
Q ss_pred hcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCce-EEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 78 KLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETR-IYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
.....++.+||-+|+|. |..+..+++.. +.+ +++++.+++..+.+++. +. ..
T Consensus 154 ~~~~~~g~~vlI~g~g~vg~~~~~la~~~------------------G~~~v~~~~~~~~~~~~~~~~----g~----~~ 207 (334)
T cd08234 154 LLGIKPGDSVLVFGAGPIGLLLAQLLKLN------------------GASRVTVAEPNEEKLELAKKL----GA----TE 207 (334)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc------------------CCcEEEEECCCHHHHHHHHHh----CC----eE
Confidence 34456778899988652 55555555554 245 88888888877666432 11 12
Q ss_pred EEEcccccC----CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 156 WVEGDAEAL----CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 156 ~~~~d~~~~----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
++..+-... ......+|+++.... ....+..+.+.|+++|.++....
T Consensus 208 ~~~~~~~~~~~~~~~~~~~vd~v~~~~~------~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 208 TVDPSREDPEAQKEDNPYGFDVVIEATG------VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred EecCCCCCHHHHHHhcCCCCcEEEECCC------ChHHHHHHHHHHhcCCEEEEEec
Confidence 222111110 112346899884321 13467778899999999986543
No 357
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.04 E-value=36 Score=28.34 Aligned_cols=105 Identities=18% Similarity=0.192 Sum_probs=61.3
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+.+||=.|++ |.++..+++.+.. .+.+|++++.++...+...+..... .++.++.+|+.+
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~---------------~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~Dl~~ 64 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALK---------------EGAQVCINSRNENKLKRMKKTLSKY----GNIHYVVGDVSS 64 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHH---------------CCCEEEEEeCCHHHHHHHHHHHHhc----CCeEEEECCCCC
Confidence 4578888875 5555555555421 3578999998887665554444332 357788888765
Q ss_pred CC-----C-----CCCCeeEEEecccccccc---C--------------HHHHHHHHHhhccCCcEEEEEec
Q 036563 164 LC-----F-----EDSTMDGYTIAFGIRNVT---H--------------IEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 164 ~~-----~-----~~~~~D~v~~~~~l~~~~---~--------------~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.. + .-+..|.++.+....... + ...+++.+.+.++++|.++++..
T Consensus 65 ~~~~~~~~~~~~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 65 TESARNVIEKAAKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 31 0 012468777655422110 1 12235666677778888776543
No 358
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=78.99 E-value=27 Score=34.41 Aligned_cols=91 Identities=18% Similarity=0.081 Sum_probs=55.6
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL 164 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~ 164 (288)
.+|+=+|+ |.++..+++.... .+.+++.+|.+++.++.+++. ....+.+|+.+.
T Consensus 401 ~~vII~G~--Gr~G~~va~~L~~---------------~g~~vvvID~d~~~v~~~~~~---------g~~v~~GDat~~ 454 (601)
T PRK03659 401 PQVIIVGF--GRFGQVIGRLLMA---------------NKMRITVLERDISAVNLMRKY---------GYKVYYGDATQL 454 (601)
T ss_pred CCEEEecC--chHHHHHHHHHHh---------------CCCCEEEEECCHHHHHHHHhC---------CCeEEEeeCCCH
Confidence 35555554 5555555555421 247899999999988877542 456788998764
Q ss_pred C----CCCCCeeEEEeccccccccCHHH--HHHHHHhhccCCcEEEEE
Q 036563 165 C----FEDSTMDGYTIAFGIRNVTHIEK--ALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 165 ~----~~~~~~D~v~~~~~l~~~~~~~~--~l~~~~~~L~pgG~l~i~ 206 (288)
. ..-++.|.+++... |... .+-...+.+.|+..+++-
T Consensus 455 ~~L~~agi~~A~~vv~~~~-----d~~~n~~i~~~~r~~~p~~~IiaR 497 (601)
T PRK03659 455 ELLRAAGAEKAEAIVITCN-----EPEDTMKIVELCQQHFPHLHILAR 497 (601)
T ss_pred HHHHhcCCccCCEEEEEeC-----CHHHHHHHHHHHHHHCCCCeEEEE
Confidence 2 22346787775432 2222 333445667788888753
No 359
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=78.38 E-value=31 Score=31.37 Aligned_cols=107 Identities=22% Similarity=0.228 Sum_probs=67.3
Q ss_pred HHhhcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 75 LVSKLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 75 ~~~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
.....+.+++.+|.-+|||. |..+..-+...+ ..+++++|+++.-++.|++.-.
T Consensus 177 v~nta~v~~G~tvaV~GlGgVGlaaI~gA~~ag-----------------A~~IiAvD~~~~Kl~~A~~fGA-------- 231 (366)
T COG1062 177 VVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAG-----------------AGRIIAVDINPEKLELAKKFGA-------- 231 (366)
T ss_pred hhhcccCCCCCeEEEEeccHhHHHHHHHHHHcC-----------------CceEEEEeCCHHHHHHHHhcCC--------
Confidence 44555667888999999985 666666666553 4789999999999999987532
Q ss_pred eEEEEc----ccccC--CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCC
Q 036563 154 LLWVEG----DAEAL--CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVD 212 (288)
Q Consensus 154 v~~~~~----d~~~~--~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 212 (288)
..++.. |+.+. ...+...|.++ ... .....++.....+.++|..+++....+.
T Consensus 232 T~~vn~~~~~~vv~~i~~~T~gG~d~~~-----e~~-G~~~~~~~al~~~~~~G~~v~iGv~~~~ 290 (366)
T COG1062 232 THFVNPKEVDDVVEAIVELTDGGADYAF-----ECV-GNVEVMRQALEATHRGGTSVIIGVAGAG 290 (366)
T ss_pred ceeecchhhhhHHHHHHHhcCCCCCEEE-----Ecc-CCHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 222222 11111 12222455553 111 2334777778888889999987665553
No 360
>PLN02827 Alcohol dehydrogenase-like
Probab=78.35 E-value=20 Score=32.81 Aligned_cols=102 Identities=16% Similarity=0.061 Sum_probs=57.5
Q ss_pred cCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 79 LNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 79 l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
....++.+||=.|+|+ |..+..+++..+ ...++++|.++...+.+++. +.. .-+...
T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~G-----------------~~~vi~~~~~~~~~~~a~~l----Ga~-~~i~~~ 246 (378)
T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKLRG-----------------ASQIIGVDINPEKAEKAKTF----GVT-DFINPN 246 (378)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-----------------CCeEEEECCCHHHHHHHHHc----CCc-EEEccc
Confidence 3456788999888765 666666666652 13588899888877766432 211 001111
Q ss_pred E--ccccc-C-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCC-cEEEEEec
Q 036563 158 E--GDAEA-L-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRG-GRFLCLEL 208 (288)
Q Consensus 158 ~--~d~~~-~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 208 (288)
. .+... + ....+.+|+|+-.- .....+....+.+++| |.+++...
T Consensus 247 ~~~~~~~~~v~~~~~~g~d~vid~~------G~~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 247 DLSEPIQQVIKRMTGGGADYSFECV------GDTGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred ccchHHHHHHHHHhCCCCCEEEECC------CChHHHHHHHHhhccCCCEEEEECC
Confidence 0 01111 0 01122588886322 2233567788889998 99987544
No 361
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=78.31 E-value=18 Score=31.36 Aligned_cols=84 Identities=23% Similarity=0.321 Sum_probs=48.0
Q ss_pred CCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcE
Q 036563 123 EETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGR 202 (288)
Q Consensus 123 ~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~ 202 (288)
+..+|+++|.++..++.+.+. ++ +.-...+.+.+ ..+|+|+..-.+. ....+++++...+++|+.
T Consensus 10 ~~~~v~g~d~~~~~~~~a~~~----g~----~~~~~~~~~~~----~~~DlvvlavP~~---~~~~~l~~~~~~~~~~~i 74 (258)
T PF02153_consen 10 PDVEVYGYDRDPETLEAALEL----GI----IDEASTDIEAV----EDADLVVLAVPVS---AIEDVLEEIAPYLKPGAI 74 (258)
T ss_dssp TTSEEEEE-SSHHHHHHHHHT----TS----SSEEESHHHHG----GCCSEEEE-S-HH---HHHHHHHHHHCGS-TTSE
T ss_pred CCeEEEEEeCCHHHHHHHHHC----CC----eeeccCCHhHh----cCCCEEEEcCCHH---HHHHHHHHhhhhcCCCcE
Confidence 458999999999988777543 21 11122221211 2479998766543 357788999998988876
Q ss_pred EEEEeccCCChHHHHHHHHHh
Q 036563 203 FLCLELSHVDIPVFKELYDYY 223 (288)
Q Consensus 203 l~i~~~~~~~~~~~~~~~~~~ 223 (288)
+. +.+.........+....
T Consensus 75 v~--Dv~SvK~~~~~~~~~~~ 93 (258)
T PF02153_consen 75 VT--DVGSVKAPIVEAMERLL 93 (258)
T ss_dssp EE--E--S-CHHHHHHHHHHH
T ss_pred EE--EeCCCCHHHHHHHHHhc
Confidence 64 55555556555555443
No 362
>PRK10458 DNA cytosine methylase; Provisional
Probab=77.86 E-value=14 Score=35.18 Aligned_cols=77 Identities=10% Similarity=0.114 Sum_probs=49.4
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
..+++|+-||.|.+..-+-... ...+.++|+++.+.+.-+.+.... +....+..|+.+
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG------------------~~~v~a~Eid~~A~~TY~~N~~~~----p~~~~~~~DI~~ 145 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIG------------------GQCVFTSEWNKHAVRTYKANWYCD----PATHRFNEDIRD 145 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcC------------------CEEEEEEechHHHHHHHHHHcCCC----CccceeccChhh
Confidence 4689999999999998886542 246788999998877666654211 223344455554
Q ss_pred CCCC-----------------CCCeeEEEecccccc
Q 036563 164 LCFE-----------------DSTMDGYTIAFGIRN 182 (288)
Q Consensus 164 ~~~~-----------------~~~~D~v~~~~~l~~ 182 (288)
+... -..+|+++..+..+.
T Consensus 146 i~~~~~~~~~~~~~~~~~~~~~p~~DvL~gGpPCQ~ 181 (467)
T PRK10458 146 ITLSHKEGVSDEEAAEHIRQHIPDHDVLLAGFPCQP 181 (467)
T ss_pred CccccccccchhhhhhhhhccCCCCCEEEEcCCCCc
Confidence 4210 124788887665443
No 363
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=77.62 E-value=12 Score=32.59 Aligned_cols=69 Identities=12% Similarity=0.165 Sum_probs=43.3
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++..++|+|||.|.++.++.+..... .++...++.+|-.....+ ........... +.+.-+..|+
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~------------~~~~~~~~lIDR~~~R~K-~D~~~~~~~~~-~~~~R~riDI 82 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQED------------KPSNSRFVLIDRASNRHK-ADNKIRKDESE-PKFERLRIDI 82 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhc------------ccCCccEEEEecCccccc-chhhhhccCCC-CceEEEEEEe
Confidence 456789999999999999999987311 113478899997554332 22223222111 2456666777
Q ss_pred ccC
Q 036563 162 EAL 164 (288)
Q Consensus 162 ~~~ 164 (288)
.++
T Consensus 83 ~dl 85 (259)
T PF05206_consen 83 KDL 85 (259)
T ss_pred ecc
Confidence 665
No 364
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=77.56 E-value=16 Score=32.95 Aligned_cols=102 Identities=16% Similarity=0.192 Sum_probs=58.7
Q ss_pred cCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 79 LNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 79 l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
....++.+||=.|+|+ |..+..+++.. +.+++++|.++..++.+++. +.. .-+...
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~------------------G~~vi~~~~~~~~~~~~~~~----Ga~-~~i~~~ 218 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAM------------------GAAVVAIDIDPEKLEMMKGF----GAD-LTLNPK 218 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc------------------CCeEEEEcCCHHHHHHHHHh----CCc-eEecCc
Confidence 4556788999999965 66777777765 36799999999888777542 211 011111
Q ss_pred EcccccC-----CC-CCCCee----EEEeccccccccCHHHHHHHHHhhccCCcEEEEEecc
Q 036563 158 EGDAEAL-----CF-EDSTMD----GYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 158 ~~d~~~~-----~~-~~~~~D----~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
..+..++ .. ....+| .|+- .. .....+....+.|+++|++++....
T Consensus 219 ~~~~~~~~~~~~~~t~~~g~d~~~d~v~d-----~~-g~~~~~~~~~~~l~~~G~iv~~G~~ 274 (349)
T TIGR03201 219 DKSAREVKKLIKAFAKARGLRSTGWKIFE-----CS-GSKPGQESALSLLSHGGTLVVVGYT 274 (349)
T ss_pred cccHHHHHHHHHhhcccCCCCCCcCEEEE-----CC-CChHHHHHHHHHHhcCCeEEEECcC
Confidence 1110010 01 112344 4441 11 2234667778899999999876543
No 365
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=77.56 E-value=30 Score=31.04 Aligned_cols=102 Identities=23% Similarity=0.222 Sum_probs=58.0
Q ss_pred cCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 79 LNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 79 l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
....++.+||=.|+|. |..+..+++..+ ...++++|.++...+.+++. +.. .-+...
T Consensus 162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~G-----------------~~~v~~~~~~~~~~~~~~~~----g~~-~~v~~~ 219 (351)
T cd08285 162 ANIKLGDTVAVFGIGPVGLMAVAGARLRG-----------------AGRIIAVGSRPNRVELAKEY----GAT-DIVDYK 219 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-----------------CCeEEEEeCCHHHHHHHHHc----CCc-eEecCC
Confidence 3456677888888763 556666666643 23688999888777666542 211 011111
Q ss_pred Eccccc-C-C-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 158 EGDAEA-L-C-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 158 ~~d~~~-~-~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
..+... . . .....+|+++-... ....+..+.+.|+++|.++....
T Consensus 220 ~~~~~~~i~~~~~~~~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 220 NGDVVEQILKLTGGKGVDAVIIAGG------GQDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred CCCHHHHHHHHhCCCCCcEEEECCC------CHHHHHHHHHHhhcCCEEEEecc
Confidence 111100 0 1 12245898874221 13467888999999999986543
No 366
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=77.45 E-value=39 Score=29.72 Aligned_cols=98 Identities=13% Similarity=0.088 Sum_probs=59.3
Q ss_pred hhcCCCCCCeEEEecC--CccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 77 SKLNPFPGMKHLDVAG--GTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
......++.+||=.|+ |.|..+..+++.. +.++++++.+++..+.+++. +..
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~------------------G~~vi~~~~s~~~~~~l~~~----Ga~---- 190 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIK------------------GCKVIGCAGSDDKVAWLKEL----GFD---- 190 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHc------------------CCEEEEEeCCHHHHHHHHHc----CCC----
Confidence 3344567788887774 3477777777775 37889998888777766542 211
Q ss_pred EEEEc---cccc-C-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 155 LWVEG---DAEA-L-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 155 ~~~~~---d~~~-~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
.++.. +... + ......+|+++-.. . ...+....+.|+++|.++...
T Consensus 191 ~vi~~~~~~~~~~v~~~~~~gvd~vld~~-----g--~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 191 AVFNYKTVSLEEALKEAAPDGIDCYFDNV-----G--GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred EEEeCCCccHHHHHHHHCCCCcEEEEECC-----C--HHHHHHHHHhhccCCEEEEEc
Confidence 11211 1110 0 11224588887321 1 245678899999999998653
No 367
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=77.39 E-value=27 Score=31.69 Aligned_cols=103 Identities=19% Similarity=0.199 Sum_probs=59.6
Q ss_pred hcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCc-eEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 78 KLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEET-RIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
....+++.+||=.|+|. |..+..+++..+ . .++++|.++..++.+++. +.. .-+.
T Consensus 181 ~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G------------------~~~vi~~~~~~~~~~~~~~l----Ga~-~~i~ 237 (368)
T cd08300 181 TAKVEPGSTVAVFGLGAVGLAVIQGAKAAG------------------ASRIIGIDINPDKFELAKKF----GAT-DCVN 237 (368)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC------------------CCeEEEEeCCHHHHHHHHHc----CCC-EEEc
Confidence 34456788888888764 566666666653 5 799999999887776542 211 0111
Q ss_pred EEEc--cccc-C-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCC-cEEEEEecc
Q 036563 156 WVEG--DAEA-L-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRG-GRFLCLELS 209 (288)
Q Consensus 156 ~~~~--d~~~-~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~~ 209 (288)
.... +... . ....+.+|+|+-.. .....+....+.|+++ |.+++....
T Consensus 238 ~~~~~~~~~~~v~~~~~~g~d~vid~~------g~~~~~~~a~~~l~~~~G~~v~~g~~ 290 (368)
T cd08300 238 PKDHDKPIQQVLVEMTDGGVDYTFECI------GNVKVMRAALEACHKGWGTSVIIGVA 290 (368)
T ss_pred ccccchHHHHHHHHHhCCCCcEEEECC------CChHHHHHHHHhhccCCCeEEEEccC
Confidence 1111 1111 0 11223588887321 1134677788899887 998876543
No 368
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=77.26 E-value=9.2 Score=30.34 Aligned_cols=106 Identities=16% Similarity=0.128 Sum_probs=53.6
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.........+ +-|||+|-|.|..=-++.+.+ |+.+++++|-.-..-. .. .+ +
T Consensus 19 ~~a~~~v~~~~-G~VlElGLGNGRTydHLRe~~-----------------p~R~I~vfDR~l~~hp------~~--~P-~ 71 (160)
T PF12692_consen 19 NWAAAQVAGLP-GPVLELGLGNGRTYDHLREIF-----------------PDRRIYVFDRALACHP------SS--TP-P 71 (160)
T ss_dssp HHHHHHTTT---S-EEEE--TTSHHHHHHHHH-------------------SS-EEEEESS--S-G------GG------
T ss_pred HHHHHHhcCCC-CceEEeccCCCccHHHHHHhC-----------------CCCeEEEEeeecccCC------CC--CC-c
Confidence 44555555544 579999999999999999998 6899999996322111 00 11 3
Q ss_pred ceEEEEcccccC-C---CCCCCeeEEEeccccccccCHHH----HHHHHHhhccCCcEEEE
Q 036563 153 SLLWVEGDAEAL-C---FEDSTMDGYTIAFGIRNVTHIEK----ALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 153 ~v~~~~~d~~~~-~---~~~~~~D~v~~~~~l~~~~~~~~----~l~~~~~~L~pgG~l~i 205 (288)
.-.++.+|+.+. + ....+.-++.+....++-+.-.. +-.-+..+|.|||.++-
T Consensus 72 ~~~~ilGdi~~tl~~~~~~g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 72 EEDLILGDIRETLPALARFGAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp GGGEEES-HHHHHHHHHHH-S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred hHheeeccHHHHhHHHHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 346778887653 1 22234555555544443321111 23356788999999873
No 369
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=76.90 E-value=23 Score=32.12 Aligned_cols=97 Identities=13% Similarity=0.168 Sum_probs=53.9
Q ss_pred CCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEE-c
Q 036563 82 FPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVE-G 159 (288)
Q Consensus 82 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~-~ 159 (288)
.++.+|+=.|+|. |..+..+++.. +.++++++.+++....+.+.+ +.. ..+. .
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~------------------G~~vi~~~~~~~~~~~~~~~~---Ga~----~~i~~~ 233 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAM------------------GHHVTVISSSDKKREEALEHL---GAD----DYLVSS 233 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHC------------------CCeEEEEeCCHHHHHHHHHhc---CCc----EEecCC
Confidence 4677888777654 66666666665 367888887776554443322 211 1111 1
Q ss_pred ccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEecc
Q 036563 160 DAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 160 d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
+...+......+|+++-.. .....+..+.+.|+++|+++.....
T Consensus 234 ~~~~~~~~~~~~D~vid~~------g~~~~~~~~~~~l~~~G~iv~~G~~ 277 (357)
T PLN02514 234 DAAEMQEAADSLDYIIDTV------PVFHPLEPYLSLLKLDGKLILMGVI 277 (357)
T ss_pred ChHHHHHhcCCCcEEEECC------CchHHHHHHHHHhccCCEEEEECCC
Confidence 1111110112478776321 1234677788899999999876543
No 370
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=76.35 E-value=54 Score=29.01 Aligned_cols=101 Identities=14% Similarity=0.027 Sum_probs=59.4
Q ss_pred hhcCCCCCCeEEEecC--CccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 77 SKLNPFPGMKHLDVAG--GTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
......++.+||=.|+ |.|..+..+++.. +.++++++.+++..+.+++ .+.. .-+
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~------------------G~~Vi~~~~s~~~~~~~~~----lGa~-~vi 188 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLK------------------GCKVVGAAGSDEKVAYLKK----LGFD-VAF 188 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHc------------------CCEEEEEeCCHHHHHHHHH----cCCC-EEE
Confidence 3445567888988884 3577777777775 3788889888877766643 2211 001
Q ss_pred EEEEc-ccccC--CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 155 LWVEG-DAEAL--CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 155 ~~~~~-d~~~~--~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
..... +.... ....+.+|+++-.. . ...+....+.|+++|++++..
T Consensus 189 ~~~~~~~~~~~~~~~~~~gvdvv~d~~-----G--~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 189 NYKTVKSLEETLKKASPDGYDCYFDNV-----G--GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred eccccccHHHHHHHhCCCCeEEEEECC-----C--HHHHHHHHHHhCcCcEEEEec
Confidence 11110 11110 11223589887321 1 124577889999999999754
No 371
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=76.21 E-value=38 Score=30.28 Aligned_cols=102 Identities=20% Similarity=0.264 Sum_probs=57.7
Q ss_pred hhcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCce-EEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 77 SKLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETR-IYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
......++.+||=.|+|. |..+..+++.. +.+ +++++.++...+.+++. +.. .-+
T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~------------------G~~~v~~~~~~~~~~~~~~~~----g~~-~vi 212 (343)
T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAF------------------GATKVVVTDIDPSRLEFAKEL----GAT-HTV 212 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc------------------CCcEEEEECCCHHHHHHHHHc----CCc-EEe
Confidence 344556778888777754 56666666664 255 88888777766665442 211 001
Q ss_pred EEEEccc----ccC--CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 155 LWVEGDA----EAL--CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 155 ~~~~~d~----~~~--~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
.....+. ..+ ......+|+++-... ....+....+.|+++|.++...
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 213 NVRTEDTPESAEKIAELLGGKGPDVVIECTG------AESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred ccccccchhHHHHHHHHhCCCCCCEEEECCC------CHHHHHHHHHHhhcCCEEEEEc
Confidence 1111110 011 122345898874322 1236778899999999988654
No 372
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=76.02 E-value=13 Score=33.53 Aligned_cols=103 Identities=20% Similarity=0.151 Sum_probs=59.3
Q ss_pred CCCCCCeEEEecCC-ccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEE
Q 036563 80 NPFPGMKHLDVAGG-TGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVE 158 (288)
Q Consensus 80 ~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~ 158 (288)
...|+.+|-=+|.| -|.++..+++.++ .+|+++|-+..--+.+.+.+... ..-...
T Consensus 178 g~~pG~~vgI~GlGGLGh~aVq~AKAMG------------------~rV~vis~~~~kkeea~~~LGAd-----~fv~~~ 234 (360)
T KOG0023|consen 178 GLGPGKWVGIVGLGGLGHMAVQYAKAMG------------------MRVTVISTSSKKKEEAIKSLGAD-----VFVDST 234 (360)
T ss_pred CCCCCcEEEEecCcccchHHHHHHHHhC------------------cEEEEEeCCchhHHHHHHhcCcc-----eeEEec
Confidence 33477776666655 6999999999985 99999999876666666654322 111111
Q ss_pred cccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEecc
Q 036563 159 GDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 159 ~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
.|.....-..++.|.++-.-. .+ ....+..+.++||++|.++++...
T Consensus 235 ~d~d~~~~~~~~~dg~~~~v~--~~--a~~~~~~~~~~lk~~Gt~V~vg~p 281 (360)
T KOG0023|consen 235 EDPDIMKAIMKTTDGGIDTVS--NL--AEHALEPLLGLLKVNGTLVLVGLP 281 (360)
T ss_pred CCHHHHHHHHHhhcCcceeee--ec--cccchHHHHHHhhcCCEEEEEeCc
Confidence 121111111123333321110 00 233466788999999999986543
No 373
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=75.72 E-value=31 Score=29.59 Aligned_cols=97 Identities=20% Similarity=0.195 Sum_probs=57.3
Q ss_pred hcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCce-EEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 78 KLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETR-IYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
.....++.+||=.|+|. |..+..+++..+ .+ +++++.+++..+.+++.- .. ..+
T Consensus 92 ~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g------------------~~~vi~~~~~~~~~~~~~~~g----~~-~~~- 147 (277)
T cd08255 92 DAEPRLGERVAVVGLGLVGLLAAQLAKAAG------------------AREVVGVDPDAARRELAEALG----PA-DPV- 147 (277)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC------------------CCcEEEECCCHHHHHHHHHcC----CC-ccc-
Confidence 34456678888888765 666666666653 55 899998888777555431 00 111
Q ss_pred EEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 156 WVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 156 ~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
....- .. .....+|+++-... ....+....+.|+++|.++...
T Consensus 148 -~~~~~-~~-~~~~~~d~vl~~~~------~~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 148 -AADTA-DE-IGGRGADVVIEASG------SPSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred -cccch-hh-hcCCCCCEEEEccC------ChHHHHHHHHHhcCCcEEEEEe
Confidence 10000 00 12335888874221 1335677888999999998654
No 374
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=75.70 E-value=38 Score=30.10 Aligned_cols=101 Identities=21% Similarity=0.267 Sum_probs=58.8
Q ss_pred hcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEE
Q 036563 78 KLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLW 156 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~ 156 (288)
.....++.+||-.|+|. |..+..+++.. +.+++++..+++..+..++. +.. .-+..
T Consensus 154 ~~~l~~g~~vLI~g~g~vG~~a~~lA~~~------------------g~~v~~~~~s~~~~~~~~~~----g~~-~v~~~ 210 (337)
T cd08261 154 RAGVTAGDTVLVVGAGPIGLGVIQVAKAR------------------GARVIVVDIDDERLEFAREL----GAD-DTINV 210 (337)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc------------------CCeEEEECCCHHHHHHHHHh----CCC-EEecC
Confidence 34456677899888764 66666677765 47888887777776666432 111 01111
Q ss_pred EEccc-ccC--CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 157 VEGDA-EAL--CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 157 ~~~d~-~~~--~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
...+. ..+ ..+...+|+++-... ....+..+.+.|+++|.++...
T Consensus 211 ~~~~~~~~l~~~~~~~~vd~vld~~g------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 211 GDEDVAARLRELTDGEGADVVIDATG------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred cccCHHHHHHHHhCCCCCCEEEECCC------CHHHHHHHHHHHhcCCEEEEEc
Confidence 11111 001 112345898875321 1345778889999999988653
No 375
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=75.57 E-value=45 Score=30.05 Aligned_cols=97 Identities=21% Similarity=0.204 Sum_probs=53.6
Q ss_pred CCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCc-eEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEc
Q 036563 82 FPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEET-RIYVCDINPNMLNVGKKRALERGYPDKSLLWVEG 159 (288)
Q Consensus 82 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~ 159 (288)
.++.+||=.|+|. |..+..+++.. +. ++++++.++...+.+++ .+.. .-+.....
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~------------------G~~~v~~~~~~~~~~~~~~~----~g~~-~vi~~~~~ 232 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLA------------------GARRVIVIDGSPERLELARE----FGAD-ATIDIDEL 232 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc------------------CCCeEEEEcCCHHHHHHHHH----cCCC-eEEcCccc
Confidence 3677788777653 55555556654 35 88999888776655532 2221 00111111
Q ss_pred ccc----cC-C-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 160 DAE----AL-C-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 160 d~~----~~-~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
+.. .+ . .....+|+++-... ....+....+.|+++|.++...
T Consensus 233 ~~~~~~~~i~~~~~~~~~d~vid~~g------~~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 233 PDPQRRAIVRDITGGRGADVVIEASG------HPAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred ccHHHHHHHHHHhCCCCCcEEEECCC------ChHHHHHHHHHhccCCEEEEEc
Confidence 110 01 0 11235898873221 1345777889999999998654
No 376
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=75.44 E-value=60 Score=28.95 Aligned_cols=114 Identities=19% Similarity=0.212 Sum_probs=71.8
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC-C
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP-D 151 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~ 151 (288)
+.+...+... -..|+-+|||-=.-...+ +.+++..++=+|. |+.++.=++.+.+.+.. .
T Consensus 83 ~~~~~~~~~g-~~qvViLgaGLDTRayRl------------------~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~ 142 (297)
T COG3315 83 DFVRAALDAG-IRQVVILGAGLDTRAYRL------------------DWPKGTRVFEVDL-PEVIEFKKKLLAERGATPP 142 (297)
T ss_pred HHHHHHHHhc-ccEEEEeccccccceeec------------------CCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCC
Confidence 4444455443 457999999963222111 1223356666664 66666666666666543 1
Q ss_pred CceEEEEcccccCC---------CCCCCeeEEEeccccccccC--HHHHHHHHHhhccCCcEEEEE
Q 036563 152 KSLLWVEGDAEALC---------FEDSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 152 ~~v~~~~~d~~~~~---------~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~ 206 (288)
...+++..|+.... +..+.--++++-.++.+++. ..+++..+...+.||..++..
T Consensus 143 ~~~~~Va~Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~ 208 (297)
T COG3315 143 AHRRLVAVDLREDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFD 208 (297)
T ss_pred ceEEEEeccccccchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEe
Confidence 36888999987431 23445567788888888863 467899999999999888754
No 377
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=75.32 E-value=42 Score=29.62 Aligned_cols=97 Identities=21% Similarity=0.212 Sum_probs=57.4
Q ss_pred cCCCCCCeEEEecCC-ccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 79 LNPFPGMKHLDVAGG-TGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 79 l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
....++.+||-.|+| .|..+..+++.. +.++++++.++...+.+++. +.. .++
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~------------------G~~v~~~~~~~~~~~~~~~~----g~~----~~~ 211 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAM------------------GFETVAITRSPDKRELARKL----GAD----EVV 211 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHC------------------CCEEEEEeCCHHHHHHHHHh----CCc----EEe
Confidence 445667788888886 466666666664 36889999888877666432 110 111
Q ss_pred EcccccCC-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 158 EGDAEALC-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 158 ~~d~~~~~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
...-.... .....+|+++.... ....+..+.+.|+++|.++...
T Consensus 212 ~~~~~~~~~~~~~~~d~vi~~~~------~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 212 DSGAELDEQAAAGGADVILVTVV------SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred ccCCcchHHhccCCCCEEEECCC------cHHHHHHHHHhcccCCEEEEEC
Confidence 11100000 01235888874321 1335777889999999988653
No 378
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=75.28 E-value=43 Score=29.44 Aligned_cols=95 Identities=19% Similarity=0.225 Sum_probs=56.1
Q ss_pred hhcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 77 SKLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
......++.+||=.|+|. |..+..+++.. +.++++++.+++..+.+++ . +.. .+.
T Consensus 149 ~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~------------------G~~vi~~~~~~~~~~~~~~-~---g~~--~~~ 204 (319)
T cd08242 149 EQVPITPGDKVAVLGDGKLGLLIAQVLALT------------------GPDVVLVGRHSEKLALARR-L---GVE--TVL 204 (319)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc------------------CCeEEEEcCCHHHHHHHHH-c---CCc--EEe
Confidence 344556677888887643 44444445443 3678899988888777765 2 221 111
Q ss_pred EEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 156 WVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 156 ~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+.... .....+|+++-.. .....+....+.|+++|.+++.
T Consensus 205 ----~~~~~-~~~~~~d~vid~~------g~~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 205 ----PDEAE-SEGGGFDVVVEAT------GSPSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred ----Ccccc-ccCCCCCEEEECC------CChHHHHHHHHHhhcCCEEEEE
Confidence 11111 1234588887431 1234567778889999999863
No 379
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=74.27 E-value=5.1 Score=37.01 Aligned_cols=58 Identities=12% Similarity=0.183 Sum_probs=47.0
Q ss_pred CceEEEEcccccC--CCCCCCeeEEEeccccccccC--HHHHHHHHHhhccCCcEEEEEecc
Q 036563 152 KSLLWVEGDAEAL--CFEDSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 152 ~~v~~~~~d~~~~--~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
+++++..+++.+. ..+++++|.++....+.++++ ....++++.+.++|||+++.=...
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~ 336 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAA 336 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCC
Confidence 5899999988765 356789999999888888764 467899999999999999974443
No 380
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=73.91 E-value=7 Score=34.62 Aligned_cols=32 Identities=9% Similarity=0.150 Sum_probs=22.9
Q ss_pred CCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 169 STMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 169 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
+.||+|+.....-|.-.+. +.++++|+|.|++
T Consensus 221 ~~Fd~ifvs~s~vh~L~p~-----l~~~~a~~A~Lvv 252 (289)
T PF14740_consen 221 NFFDLIFVSCSMVHFLKPE-----LFQALAPDAVLVV 252 (289)
T ss_pred CCCCEEEEhhhhHhhcchH-----HHHHhCCCCEEEE
Confidence 5699998877654443333 7778899998885
No 381
>PRK12939 short chain dehydrogenase; Provisional
Probab=73.29 E-value=42 Score=28.15 Aligned_cols=77 Identities=12% Similarity=0.079 Sum_probs=48.0
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
++++|=.| |+|.++..+++.+.. .+.++++++.+++.++...+.+...+ .++.++.+|+.+
T Consensus 7 ~~~vlItG-a~g~iG~~la~~l~~---------------~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~ 67 (250)
T PRK12939 7 GKRALVTG-AARGLGAAFAEALAE---------------AGATVAFNDGLAAEARELAAALEAAG---GRAHAIAADLAD 67 (250)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHH---------------cCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEccCCC
Confidence 56777555 467777777766531 24788888888776665555444332 368888888865
Q ss_pred CC-----CC-----CCCeeEEEeccc
Q 036563 164 LC-----FE-----DSTMDGYTIAFG 179 (288)
Q Consensus 164 ~~-----~~-----~~~~D~v~~~~~ 179 (288)
.. +. -+..|.++.+..
T Consensus 68 ~~~~~~~~~~~~~~~~~id~vi~~ag 93 (250)
T PRK12939 68 PASVQRFFDAAAAALGGLDGLVNNAG 93 (250)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 31 00 135888876654
No 382
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=73.22 E-value=48 Score=29.47 Aligned_cols=98 Identities=18% Similarity=0.195 Sum_probs=56.8
Q ss_pred hcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCce-EEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 78 KLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETR-IYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
.....++.+||-.|+|. |..+..+++.. +.+ +++++.++...+..++. +. ..
T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~------------------G~~~v~~~~~~~~~~~~l~~~----g~----~~ 207 (343)
T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWLKIL------------------GAKRVIAVDIDDEKLAVAREL----GA----DD 207 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc------------------CCCEEEEEcCCHHHHHHHHHc----CC----CE
Confidence 34456677888888654 55666666654 354 88888877766655321 21 11
Q ss_pred EEEcc---cccC-C-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 156 WVEGD---AEAL-C-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 156 ~~~~d---~~~~-~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
++..+ ...+ . .....+|+++-.. .....+..+.+.|+++|.++...
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~d~vld~~------g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 208 TINPKEEDVEKVRELTEGRGADLVIEAA------GSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred EecCccccHHHHHHHhCCCCCCEEEECC------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 11111 1111 1 1223489887431 12346778899999999988754
No 383
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=73.22 E-value=13 Score=30.90 Aligned_cols=70 Identities=20% Similarity=0.171 Sum_probs=45.6
Q ss_pred CCCCCeEEEecCC-ccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEc
Q 036563 81 PFPGMKHLDVAGG-TGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEG 159 (288)
Q Consensus 81 ~~~~~~vLDiG~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~ 159 (288)
...+.+||=+|+- +|.+...++.. .++++.+|+.|.|.... + +++.|..+
T Consensus 42 ~~E~~~vli~G~YltG~~~a~~Ls~-------------------~~~vtv~Di~p~~r~~l---------p-~~v~Fr~~ 92 (254)
T COG4017 42 GEEFKEVLIFGVYLTGNYTAQMLSK-------------------ADKVTVVDIHPFMRGFL---------P-NNVKFRNL 92 (254)
T ss_pred ccCcceEEEEEeeehhHHHHHHhcc-------------------cceEEEecCCHHHHhcC---------C-CCccHhhh
Confidence 3446789999886 57766655544 48999999999774432 1 45555543
Q ss_pred ccccCCCCCCCeeEEEeccccccc
Q 036563 160 DAEALCFEDSTMDGYTIAFGIRNV 183 (288)
Q Consensus 160 d~~~~~~~~~~~D~v~~~~~l~~~ 183 (288)
..++.+.+|+|+=.-.+..+
T Consensus 93 ----~~~~~G~~DlivDlTGlGG~ 112 (254)
T COG4017 93 ----LKFIRGEVDLIVDLTGLGGI 112 (254)
T ss_pred ----cCCCCCceeEEEeccccCCC
Confidence 34456678888865555444
No 384
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=73.08 E-value=39 Score=30.04 Aligned_cols=100 Identities=23% Similarity=0.305 Sum_probs=55.1
Q ss_pred CCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEE
Q 036563 80 NPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVE 158 (288)
Q Consensus 80 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~ 158 (288)
..+++.+||-.|+|. |..+..+++..+ ...+++++.++...+.+++. +.. .-+....
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g-----------------~~~v~~~~~~~~~~~~~~~~----g~~-~vi~~~~ 221 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLG-----------------AARIIAVDSNPERLDLAKEA----GAT-DIINPKN 221 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-----------------CCEEEEEeCCHHHHHHHHHh----CCc-EEEcCCc
Confidence 345677888877653 666666666642 13788888777666555432 110 0011111
Q ss_pred ccccc-C--CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 159 GDAEA-L--CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 159 ~d~~~-~--~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
.+... + ......+|+++-... ....+....+.|+++|.++...
T Consensus 222 ~~~~~~i~~~~~~~~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 222 GDIVEQILELTGGRGVDCVIEAVG------FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred chHHHHHHHHcCCCCCcEEEEccC------CHHHHHHHHHHhhcCCEEEEEc
Confidence 11101 0 012346898874221 1246788889999999988643
No 385
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=73.08 E-value=71 Score=29.53 Aligned_cols=106 Identities=17% Similarity=0.141 Sum_probs=59.8
Q ss_pred cCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 79 LNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 79 l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
....++.+||=.|+|. |..+..+++..+ ...+++.|.++..++.+++. +. . .+.
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~G-----------------a~~vi~~d~~~~r~~~a~~~----Ga---~-~v~ 235 (393)
T TIGR02819 181 AGVGPGSTVYIAGAGPVGLAAAASAQLLG-----------------AAVVIVGDLNPARLAQARSF----GC---E-TVD 235 (393)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-----------------CceEEEeCCCHHHHHHHHHc----CC---e-EEe
Confidence 3455677777788764 666666666653 13466678888777777653 21 1 111
Q ss_pred Ec---cccc-C-C-CCCCCeeEEEecccccc--------ccCHHHHHHHHHhhccCCcEEEEEecc
Q 036563 158 EG---DAEA-L-C-FEDSTMDGYTIAFGIRN--------VTHIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 158 ~~---d~~~-~-~-~~~~~~D~v~~~~~l~~--------~~~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
.. +... + . .....+|+++-.-.-.. ..+....++...+.++++|.++++...
T Consensus 236 ~~~~~~~~~~v~~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 236 LSKDATLPEQIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred cCCcccHHHHHHHHcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 11 1111 1 0 12235888874332110 011235788899999999999986653
No 386
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=73.01 E-value=9.9 Score=35.16 Aligned_cols=51 Identities=20% Similarity=0.144 Sum_probs=36.6
Q ss_pred HhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhh
Q 036563 76 VSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRAL 145 (288)
Q Consensus 76 ~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~ 145 (288)
.+.+...++.+||-|.+|....... +... -.+|++||.||......+-+..
T Consensus 28 ~~aL~i~~~d~vl~ItSaG~N~L~y-L~~~------------------P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 28 MEALNIGPDDRVLTITSAGCNALDY-LLAG------------------PKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred HHHhCCCCCCeEEEEccCCchHHHH-HhcC------------------CceEEEEeCCHHHHHHHHHHHH
Confidence 4677788899999997665554444 4432 3899999999988776665543
No 387
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=72.94 E-value=19 Score=33.04 Aligned_cols=95 Identities=21% Similarity=0.203 Sum_probs=53.5
Q ss_pred CCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhH-HHHHHHHhhhcCCCCCceEEEEc
Q 036563 82 FPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNM-LNVGKKRALERGYPDKSLLWVEG 159 (288)
Q Consensus 82 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~-~~~a~~~~~~~~~~~~~v~~~~~ 159 (288)
.++.+||=.|+|. |..+..+++.. +.++++++.+++. .+.+++ .+.. .++..
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~------------------Ga~Vi~~~~~~~~~~~~a~~----lGa~----~~i~~ 230 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAF------------------GLRVTVISRSSEKEREAIDR----LGAD----SFLVT 230 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHc------------------CCeEEEEeCChHHhHHHHHh----CCCc----EEEcC
Confidence 4677888888864 66666677765 3678888877544 333322 2211 11111
Q ss_pred -ccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 160 -DAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 160 -d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
+...+....+.+|+++-.. .....+....+.++++|.++.+..
T Consensus 231 ~~~~~v~~~~~~~D~vid~~------G~~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 231 TDSQKMKEAVGTMDFIIDTV------SAEHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred cCHHHHHHhhCCCcEEEECC------CcHHHHHHHHHhhcCCCEEEEEcc
Confidence 1011100012478876321 223457778889999999987654
No 388
>PRK07576 short chain dehydrogenase; Provisional
Probab=72.85 E-value=54 Score=28.06 Aligned_cols=77 Identities=17% Similarity=0.210 Sum_probs=46.8
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.++|=.|+ +|.++..+++.+.. .+++|+.++.+++.++...+.....+ .++.++.+|+.
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~---------------~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dv~ 68 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFAR---------------AGANVAVASRSQEKVDAAVAQLQQAG---PEGLGVSADVR 68 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHH---------------CCCEEEEEeCCHHHHHHHHHHHHHhC---CceEEEECCCC
Confidence 3567777764 66666666665431 35789999988776655544444332 35677788876
Q ss_pred cCC-----C-----CCCCeeEEEecc
Q 036563 163 ALC-----F-----EDSTMDGYTIAF 178 (288)
Q Consensus 163 ~~~-----~-----~~~~~D~v~~~~ 178 (288)
+.. + ..+..|+++.+.
T Consensus 69 ~~~~i~~~~~~~~~~~~~iD~vi~~a 94 (264)
T PRK07576 69 DYAAVEAAFAQIADEFGPIDVLVSGA 94 (264)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 531 0 113579988654
No 389
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=72.70 E-value=36 Score=30.84 Aligned_cols=102 Identities=17% Similarity=0.106 Sum_probs=57.9
Q ss_pred cCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCc-eEEEEeCChhHHHHHHHHhhhcCCCCCceEE
Q 036563 79 LNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEET-RIYVCDINPNMLNVGKKRALERGYPDKSLLW 156 (288)
Q Consensus 79 l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~ 156 (288)
....++.+||=.|+|. |..+..+++.. +. ++++++.+++.++.+++. +.. .-+..
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~------------------G~~~vi~~~~~~~~~~~~~~~----Ga~-~~i~~ 239 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARIR------------------GASRIIGVDLNPSKFEQAKKF----GVT-EFVNP 239 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc------------------CCCeEEEEcCCHHHHHHHHHc----CCc-eEEcc
Confidence 4456788888888764 55666666664 24 799999988877776442 211 01111
Q ss_pred EEc--cccc-C-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCC-cEEEEEecc
Q 036563 157 VEG--DAEA-L-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRG-GRFLCLELS 209 (288)
Q Consensus 157 ~~~--d~~~-~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~~ 209 (288)
... +... + ....+.+|+++-.. .....+....+.++++ |.+++....
T Consensus 240 ~~~~~~~~~~v~~~~~~~~d~vid~~------G~~~~~~~~~~~~~~~~g~~v~~g~~ 291 (369)
T cd08301 240 KDHDKPVQEVIAEMTGGGVDYSFECT------GNIDAMISAFECVHDGWGVTVLLGVP 291 (369)
T ss_pred cccchhHHHHHHHHhCCCCCEEEECC------CChHHHHHHHHHhhcCCCEEEEECcC
Confidence 110 0100 0 11223578776321 1244667778888996 998876543
No 390
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=72.41 E-value=55 Score=29.30 Aligned_cols=102 Identities=19% Similarity=0.189 Sum_probs=57.1
Q ss_pred hcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCc-eEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 78 KLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEET-RIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
.....++.+||=.|+|. |..+..+++.. +. .+++++.+++..+.+++. +.. .-+.
T Consensus 167 ~~~~~~g~~vlI~g~g~vG~~a~q~a~~~------------------G~~~v~~~~~~~~~~~~~~~~----ga~-~~i~ 223 (351)
T cd08233 167 RSGFKPGDTALVLGAGPIGLLTILALKAA------------------GASKIIVSEPSEARRELAEEL----GAT-IVLD 223 (351)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc------------------CCCEEEEECCCHHHHHHHHHh----CCC-EEEC
Confidence 34456677888787643 45555555554 35 788998888877766432 211 0011
Q ss_pred EEEccccc-C-CC-CCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 156 WVEGDAEA-L-CF-EDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 156 ~~~~d~~~-~-~~-~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
....+... + .. ....+|+++-... ....+..+.+.|+++|.++.+..
T Consensus 224 ~~~~~~~~~l~~~~~~~~~d~vid~~g------~~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 224 PTEVDVVAEVRKLTGGGGVDVSFDCAG------VQATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred CCccCHHHHHHHHhCCCCCCEEEECCC------CHHHHHHHHHhccCCCEEEEEcc
Confidence 11111110 1 11 2234898874221 13457788899999999987654
No 391
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=72.38 E-value=16 Score=33.22 Aligned_cols=102 Identities=19% Similarity=0.122 Sum_probs=57.9
Q ss_pred hcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCc-eEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 78 KLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEET-RIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
.....++.+||=+|+|. |..+..+++..+ . +++++|.++..++.+++. +.. .-+.
T Consensus 179 ~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G------------------~~~Vi~~~~~~~~~~~~~~~----ga~-~~i~ 235 (365)
T cd08277 179 TAKVEPGSTVAVFGLGAVGLSAIMGAKIAG------------------ASRIIGVDINEDKFEKAKEF----GAT-DFIN 235 (365)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC------------------CCeEEEEeCCHHHHHHHHHc----CCC-cEec
Confidence 34456788888888764 556666666653 4 799999988877776442 111 0011
Q ss_pred EEEcc--ccc-C-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCC-cEEEEEec
Q 036563 156 WVEGD--AEA-L-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRG-GRFLCLEL 208 (288)
Q Consensus 156 ~~~~d--~~~-~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 208 (288)
....+ ... + ......+|+|+-.. .....+....+.|+++ |.+++...
T Consensus 236 ~~~~~~~~~~~~~~~~~~g~d~vid~~------g~~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 236 PKDSDKPVSEVIREMTGGGVDYSFECT------GNADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred cccccchHHHHHHHHhCCCCCEEEECC------CChHHHHHHHHhcccCCCEEEEEcC
Confidence 11100 000 1 01123588887321 1134677788889885 99987544
No 392
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=72.26 E-value=8.1 Score=30.31 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=24.5
Q ss_pred EecCCcc--HHHHHHHH-hhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHH
Q 036563 89 DVAGGTG--DVAFRILD-TVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKR 143 (288)
Q Consensus 89 DiG~G~G--~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~ 143 (288)
|||+..| .....++. ... +..+++++|++|...+..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~----------------~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCG----------------PGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS------------------SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcC----------------CCCEEEEEECCHHHHHHHhHH
Confidence 8999999 55554432 222 468999999999998888877
No 393
>PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins.
Probab=72.00 E-value=6.9 Score=30.10 Aligned_cols=30 Identities=20% Similarity=0.233 Sum_probs=27.2
Q ss_pred ChHHHHHHHHHcCCcEEEEEEeeCCeeEEE
Q 036563 254 PQEKFAAMISDAGFQKVEYENLVGGVVAIH 283 (288)
Q Consensus 254 ~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~ 283 (288)
+++++..+++++||+++..+....+.+.++
T Consensus 97 ~~~~~~~l~~~aGl~~~~~w~d~~~~f~l~ 126 (127)
T PF10017_consen 97 SPEEFEALAEQAGLEVEKRWTDPKGDFSLY 126 (127)
T ss_pred CHHHHHHHHHHCCCeeEEEEECCCCCeEEE
Confidence 899999999999999999998888877776
No 394
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=71.92 E-value=36 Score=30.39 Aligned_cols=101 Identities=16% Similarity=0.163 Sum_probs=60.1
Q ss_pred hcCCCCCCeEEEecC--CccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 78 KLNPFPGMKHLDVAG--GTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
.....++.+||=.|+ |.|..+..+++.. +.++++++.+++..+.+++.+ +.. .-+.
T Consensus 146 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~------------------G~~Vi~~~~~~~~~~~~~~~l---Ga~-~vi~ 203 (338)
T cd08295 146 VCKPKKGETVFVSAASGAVGQLVGQLAKLK------------------GCYVVGSAGSDEKVDLLKNKL---GFD-DAFN 203 (338)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHc------------------CCEEEEEeCCHHHHHHHHHhc---CCc-eeEE
Confidence 345667889998886 3467777777775 378888888887777665532 211 1111
Q ss_pred EEEc-cccc-C-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 156 WVEG-DAEA-L-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 156 ~~~~-d~~~-~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
+... +... + ......+|+++-.. . ...+....+.|+++|.++...
T Consensus 204 ~~~~~~~~~~i~~~~~~gvd~v~d~~-----g--~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 204 YKEEPDLDAALKRYFPNGIDIYFDNV-----G--GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred cCCcccHHHHHHHhCCCCcEEEEECC-----C--HHHHHHHHHHhccCcEEEEec
Confidence 1111 1111 0 11124688887321 1 245778899999999998754
No 395
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=70.71 E-value=54 Score=26.40 Aligned_cols=94 Identities=12% Similarity=0.040 Sum_probs=56.5
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
...+|+-|||=+-.... .+... +..+++.+|++...-. .+ ++ +|..-|..
T Consensus 25 ~~~~iaclstPsl~~~l--~~~~~----------------~~~~~~Lle~D~RF~~--------~~---~~-~F~fyD~~ 74 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEAL--KKESK----------------PRIQSFLLEYDRRFEQ--------FG---GD-EFVFYDYN 74 (162)
T ss_pred CCCEEEEEeCcHHHHHH--HhhcC----------------CCccEEEEeecchHHh--------cC---Cc-ceEECCCC
Confidence 35789999886633332 22111 4578999999875422 11 23 45555654
Q ss_pred cC---C-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 163 AL---C-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 163 ~~---~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
.. + .-.++||+|++...+-..+-..+....++-++++++.+++.
T Consensus 75 ~p~~~~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~ 122 (162)
T PF10237_consen 75 EPEELPEELKGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILC 122 (162)
T ss_pred ChhhhhhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEe
Confidence 43 1 11468999999888732222345556666677888888853
No 396
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=70.59 E-value=17 Score=27.59 Aligned_cols=89 Identities=19% Similarity=0.130 Sum_probs=53.2
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
.++|+|+|.|-=......+.+. +..++++|+++. +.. ..+++...|+.+
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~------------------g~dv~atDI~~~-------~a~------~g~~~v~DDitn 62 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAER------------------GFDVLATDINEK-------TAP------EGLRFVVDDITN 62 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHc------------------CCcEEEEecccc-------cCc------ccceEEEccCCC
Confidence 3599999998754333333333 389999999886 111 357889999887
Q ss_pred CCCC-CCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 164 LCFE-DSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 164 ~~~~-~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.... =...|+|.+ +.-.++..+.+-.+.+.+ |..+++..+
T Consensus 63 P~~~iY~~A~lIYS---iRpppEl~~~ildva~aV--ga~l~I~pL 103 (129)
T COG1255 63 PNISIYEGADLIYS---IRPPPELQSAILDVAKAV--GAPLYIKPL 103 (129)
T ss_pred ccHHHhhCccceee---cCCCHHHHHHHHHHHHhh--CCCEEEEec
Confidence 5321 124677765 333345555555555544 455555443
No 397
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=70.31 E-value=77 Score=28.18 Aligned_cols=94 Identities=11% Similarity=0.079 Sum_probs=54.8
Q ss_pred CeEEEecC--CccHHHHHHHHhhhhhhhhhhhcccccccCCCc-eEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 85 MKHLDVAG--GTGDVAFRILDTVNSIKRRALQDVLEDDLQEET-RIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 85 ~~vLDiG~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.+||=.|+ |.|..+..+++.. +. ++++++.+++..+.+++.+ +.. .-+.....+.
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~------------------G~~~Vi~~~~s~~~~~~~~~~l---Ga~-~vi~~~~~~~ 213 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL------------------GCSRVVGICGSDEKCQLLKSEL---GFD-AAINYKTDNV 213 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc------------------CCCEEEEEcCCHHHHHHHHHhc---CCc-EEEECCCCCH
Confidence 78888876 3577777777775 35 7999988887766665432 211 0011111111
Q ss_pred cc-C-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 162 EA-L-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 162 ~~-~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
.. + ......+|+++-... . ..+....+.|+++|.++...
T Consensus 214 ~~~i~~~~~~gvd~vid~~g-----~--~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 214 AERLRELCPEGVDVYFDNVG-----G--EISDTVISQMNENSHIILCG 254 (345)
T ss_pred HHHHHHHCCCCceEEEECCC-----c--HHHHHHHHHhccCCEEEEEe
Confidence 11 0 112246898874221 1 13577889999999998754
No 398
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=70.26 E-value=41 Score=30.31 Aligned_cols=104 Identities=15% Similarity=0.205 Sum_probs=62.0
Q ss_pred hhcCCCCCCeEEEecCC--ccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 77 SKLNPFPGMKHLDVAGG--TGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G--~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
.....+++.+||=.|+. -|.++..+++..+ ..+.++-.+++-.+.+++.-.. .-+
T Consensus 136 ~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G------------------~~~v~~~~s~~k~~~~~~lGAd-----~vi 192 (326)
T COG0604 136 DRAGLKPGETVLVHGAAGGVGSAAIQLAKALG------------------ATVVAVVSSSEKLELLKELGAD-----HVI 192 (326)
T ss_pred HhcCCCCCCEEEEecCCchHHHHHHHHHHHcC------------------CcEEEEecCHHHHHHHHhcCCC-----EEE
Confidence 35556678899988854 4778888888863 3656665566555544433211 122
Q ss_pred EEEEcccccC--CCCC-CCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccC
Q 036563 155 LWVEGDAEAL--CFED-STMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 155 ~~~~~d~~~~--~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
.+...|+.+- .... ..+|+|+-.-. ...+.+..+.|+++|.++......
T Consensus 193 ~y~~~~~~~~v~~~t~g~gvDvv~D~vG-------~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 193 NYREEDFVEQVRELTGGKGVDVVLDTVG-------GDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred cCCcccHHHHHHHHcCCCCceEEEECCC-------HHHHHHHHHHhccCCEEEEEecCC
Confidence 3333333221 1222 35999984322 345666888999999999765543
No 399
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=69.86 E-value=68 Score=29.71 Aligned_cols=107 Identities=19% Similarity=0.183 Sum_probs=59.0
Q ss_pred cCCCCCCeEEEec-CC-ccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC-CCceE
Q 036563 79 LNPFPGMKHLDVA-GG-TGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP-DKSLL 155 (288)
Q Consensus 79 l~~~~~~~vLDiG-~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~v~ 155 (288)
....++.+|+=+| +| .|..+..+++..+. ...+++++|.++..++.+++........ .....
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~---------------g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~ 235 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPI---------------GPSLLVVTDVNDERLARAQRLFPPEAASRGIELL 235 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhccc---------------CCceEEEEcCCHHHHHHHHHhccccccccCceEE
Confidence 3456677888887 45 47777777776420 0137999999999888887642111000 00111
Q ss_pred EEEc----cccc-C-CC-CCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 156 WVEG----DAEA-L-CF-EDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 156 ~~~~----d~~~-~-~~-~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
++.. +... . .. ....+|+++.... ....+....+.++++|.+++.
T Consensus 236 ~i~~~~~~~~~~~v~~~t~g~g~D~vid~~g------~~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 236 YVNPATIDDLHATLMELTGGQGFDDVFVFVP------VPELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred EECCCccccHHHHHHHHhCCCCCCEEEEcCC------CHHHHHHHHHHhccCCeEEEE
Confidence 2211 1111 0 01 2235888874221 134677788999988876653
No 400
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=69.77 E-value=18 Score=32.16 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=45.3
Q ss_pred cCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEE----EEcccccC--
Q 036563 91 AGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLW----VEGDAEAL-- 164 (288)
Q Consensus 91 G~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~----~~~d~~~~-- 164 (288)
-.|+|.++..+.+++-. . .-.+++.+|.++..+-..++.+....-. +++.+ +.+|+.+.
T Consensus 4 TGa~GSIGseL~rql~~------------~--~p~~lil~d~~E~~l~~l~~~l~~~~~~-~~v~~~~~~vigDvrd~~~ 68 (293)
T PF02719_consen 4 TGAGGSIGSELVRQLLR------------Y--GPKKLILFDRDENKLYELERELRSRFPD-PKVRFEIVPVIGDVRDKER 68 (293)
T ss_dssp ETTTSHHHHHHHHHHHC------------C--B-SEEEEEES-HHHHHHHHHHCHHHC---TTCEEEEE--CTSCCHHHH
T ss_pred EccccHHHHHHHHHHHh------------c--CCCeEEEeCCChhHHHHHHHHHhhcccc-cCcccccCceeecccCHHH
Confidence 35778888888887631 0 1268999999999988887776432111 34544 47887664
Q ss_pred ---CCCCCCeeEEEecccccccc
Q 036563 165 ---CFEDSTMDGYTIAFGIRNVT 184 (288)
Q Consensus 165 ---~~~~~~~D~v~~~~~l~~~~ 184 (288)
.+.....|+|+-..++.|.+
T Consensus 69 l~~~~~~~~pdiVfHaAA~KhVp 91 (293)
T PF02719_consen 69 LNRIFEEYKPDIVFHAAALKHVP 91 (293)
T ss_dssp HHHHTT--T-SEEEE------HH
T ss_pred HHHHHhhcCCCEEEEChhcCCCC
Confidence 25556799999988888875
No 401
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=68.80 E-value=27 Score=28.46 Aligned_cols=81 Identities=14% Similarity=0.251 Sum_probs=45.1
Q ss_pred eEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC-CCceEEEEcccccC
Q 036563 86 KHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP-DKSLLWVEGDAEAL 164 (288)
Q Consensus 86 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~v~~~~~d~~~~ 164 (288)
.|+.+|||-=.....+.... ++..++=+|. |++++.-++.+...+.. ..+.+++..|+.+.
T Consensus 81 qvV~LGaGlDTr~~Rl~~~~-----------------~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~ 142 (183)
T PF04072_consen 81 QVVNLGAGLDTRAYRLDNPA-----------------GGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDD 142 (183)
T ss_dssp EEEEET-TT--HHHHHHHTT-----------------TTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSH
T ss_pred EEEEcCCCCCchHHHhhccc-----------------cceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccch
Confidence 79999999877777776653 1367777775 55555555555443110 02356788887753
Q ss_pred C---------CCCCCeeEEEecccccccc
Q 036563 165 C---------FEDSTMDGYTIAFGIRNVT 184 (288)
Q Consensus 165 ~---------~~~~~~D~v~~~~~l~~~~ 184 (288)
. +..+..-++++-.++.+++
T Consensus 143 ~~~~~L~~~g~~~~~ptl~i~Egvl~Yl~ 171 (183)
T PF04072_consen 143 SWIDALPKAGFDPDRPTLFIAEGVLMYLS 171 (183)
T ss_dssp HHHHHHHHCTT-TTSEEEEEEESSGGGS-
T ss_pred hhHHHHHHhCCCCCCCeEEEEcchhhcCC
Confidence 1 3344566777777777764
No 402
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.57 E-value=11 Score=33.74 Aligned_cols=71 Identities=11% Similarity=0.078 Sum_probs=47.3
Q ss_pred EEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCC
Q 036563 87 HLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCF 166 (288)
Q Consensus 87 vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~ 166 (288)
|+|+-||.|.++.-+.+.. ...+.++|+++...+.-+.+.. . ....+|+.++..
T Consensus 1 vidLF~G~GG~~~Gl~~aG------------------~~~~~a~e~~~~a~~ty~~N~~-------~-~~~~~Di~~~~~ 54 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG------------------FKCVFASEIDKYAQKTYEANFG-------N-KVPFGDITKISP 54 (315)
T ss_pred CEEEecCccHHHHHHHHcC------------------CeEEEEEeCCHHHHHHHHHhCC-------C-CCCccChhhhhh
Confidence 6899999999998776542 1345689999998887776652 2 334567666531
Q ss_pred C-CCCeeEEEeccccccc
Q 036563 167 E-DSTMDGYTIAFGIRNV 183 (288)
Q Consensus 167 ~-~~~~D~v~~~~~l~~~ 183 (288)
. -..+|+++.......+
T Consensus 55 ~~~~~~dvl~gg~PCq~f 72 (315)
T TIGR00675 55 SDIPDFDILLGGFPCQPF 72 (315)
T ss_pred hhCCCcCEEEecCCCccc
Confidence 1 1248999887664433
No 403
>PRK08324 short chain dehydrogenase; Validated
Probab=68.32 E-value=67 Score=32.14 Aligned_cols=105 Identities=17% Similarity=0.165 Sum_probs=61.4
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++++||=.|+ +|.++..+++.+.. .+.+++.+|.++..++.....+... .++.++.+|+.
T Consensus 421 ~gk~vLVTGa-sggIG~~la~~L~~---------------~Ga~Vvl~~r~~~~~~~~~~~l~~~----~~v~~v~~Dvt 480 (681)
T PRK08324 421 AGKVALVTGA-AGGIGKATAKRLAA---------------EGACVVLADLDEEAAEAAAAELGGP----DRALGVACDVT 480 (681)
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHH---------------CcCEEEEEeCCHHHHHHHHHHHhcc----CcEEEEEecCC
Confidence 3466776665 45555555555421 2478999999887766555443322 25777888876
Q ss_pred cCC-----C-----CCCCeeEEEeccccccccC-------------------HHHHHHHHHhhccC---CcEEEEEe
Q 036563 163 ALC-----F-----EDSTMDGYTIAFGIRNVTH-------------------IEKALAEAYRVLKR---GGRFLCLE 207 (288)
Q Consensus 163 ~~~-----~-----~~~~~D~v~~~~~l~~~~~-------------------~~~~l~~~~~~L~p---gG~l~i~~ 207 (288)
+.. + ..+.+|+++.+........ ...+++.+.+.+++ +|.++++.
T Consensus 481 d~~~v~~~~~~~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 481 DEAAVQAAFEEAALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 531 1 1135899887665322110 23346666777766 67777643
No 404
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=68.13 E-value=9.7 Score=33.88 Aligned_cols=41 Identities=27% Similarity=0.479 Sum_probs=35.2
Q ss_pred CHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhc
Q 036563 185 HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSF 225 (288)
Q Consensus 185 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~ 225 (288)
..+.+|..+.++|+|||++.++.++..+...++.++..+..
T Consensus 222 ~L~~~L~~a~~~L~~gGRl~VIsFHSLEDRiVK~ff~~~s~ 262 (314)
T COG0275 222 ELEEALEAALDLLKPGGRLAVISFHSLEDRIVKNFFKELSK 262 (314)
T ss_pred HHHHHHHHHHHhhCCCcEEEEEEecchHHHHHHHHHHHhcc
Confidence 45789999999999999999999988888888887777664
No 405
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=68.05 E-value=85 Score=27.61 Aligned_cols=95 Identities=17% Similarity=0.204 Sum_probs=54.9
Q ss_pred hhcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 77 SKLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
......++.+||=.|||. |..+..+++.. +.++++++.++...+.+++ .+.. .
T Consensus 161 ~~~~~~~~~~vlV~g~g~vg~~~~~la~~~------------------g~~v~~~~~~~~~~~~~~~----~g~~----~ 214 (329)
T cd08298 161 KLAGLKPGQRLGLYGFGASAHLALQIARYQ------------------GAEVFAFTRSGEHQELARE----LGAD----W 214 (329)
T ss_pred HhhCCCCCCEEEEECCcHHHHHHHHHHHHC------------------CCeEEEEcCChHHHHHHHH----hCCc----E
Confidence 334455677777777653 44444445543 4788888888776665533 1211 1
Q ss_pred EEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 156 WVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 156 ~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
++..+ .. ....+|.++.... ....+..+.+.|+++|.++...
T Consensus 215 ~~~~~--~~--~~~~vD~vi~~~~------~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 215 AGDSD--DL--PPEPLDAAIIFAP------VGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred EeccC--cc--CCCcccEEEEcCC------cHHHHHHHHHHhhcCCEEEEEc
Confidence 11111 11 2345887764211 1246888999999999999754
No 406
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=68.00 E-value=15 Score=32.39 Aligned_cols=102 Identities=20% Similarity=0.172 Sum_probs=65.9
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
.+..|+-+| -.-.++.+++-.. -..++.++|+++..+....+...+.++ +++..+..|+.
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~-----------------mpk~iaVvDIDERli~fi~k~aee~g~--~~ie~~~~Dlr 211 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTG-----------------MPKRIAVVDIDERLIKFIEKVAEELGY--NNIEAFVFDLR 211 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcC-----------------CCceEEEEechHHHHHHHHHHHHHhCc--cchhheeehhc
Confidence 456799998 3334443333321 137899999999999999888888887 47999999987
Q ss_pred cCCCC---CCCeeEEEeccccccccCHHHHHHHHHhhccCC---cEEEEE
Q 036563 163 ALCFE---DSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRG---GRFLCL 206 (288)
Q Consensus 163 ~~~~~---~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg---G~l~i~ 206 (288)
+. +| ..+||+.+.... +-+.....+|..=...|+.- |++.+.
T Consensus 212 ~p-lpe~~~~kFDvfiTDPp-eTi~alk~FlgRGI~tLkg~~~aGyfgiT 259 (354)
T COG1568 212 NP-LPEDLKRKFDVFITDPP-ETIKALKLFLGRGIATLKGEGCAGYFGIT 259 (354)
T ss_pred cc-ChHHHHhhCCeeecCch-hhHHHHHHHHhccHHHhcCCCccceEeee
Confidence 64 33 357998874222 22223344555545566654 777753
No 407
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=67.51 E-value=59 Score=29.04 Aligned_cols=101 Identities=18% Similarity=0.065 Sum_probs=49.8
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|+=+|+|. .+..+++.+... ...+++.+|.++.......+.+ + ......+
T Consensus 176 l~~~~V~ViGaG~--iG~~~a~~L~~~--------------g~~~V~v~~r~~~ra~~la~~~---g-----~~~~~~~- 230 (311)
T cd05213 176 LKGKKVLVIGAGE--MGELAAKHLAAK--------------GVAEITIANRTYERAEELAKEL---G-----GNAVPLD- 230 (311)
T ss_pred ccCCEEEEECcHH--HHHHHHHHHHHc--------------CCCEEEEEeCCHHHHHHHHHHc---C-----CeEEeHH-
Confidence 4678999998864 443333332100 1367999999876543333322 1 1122111
Q ss_pred ccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCC
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVD 212 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 212 (288)
+....-..+|+|+..-.-.+. ...+..+.+.. +++..++++...|.
T Consensus 231 -~~~~~l~~aDvVi~at~~~~~---~~~~~~~~~~~-~~~~~~viDlavPr 276 (311)
T cd05213 231 -ELLELLNEADVVISATGAPHY---AKIVERAMKKR-SGKPRLIVDLAVPR 276 (311)
T ss_pred -HHHHHHhcCCEEEECCCCCch---HHHHHHHHhhC-CCCCeEEEEeCCCC
Confidence 111111347999876654332 33333333332 33444556776653
No 408
>PRK06181 short chain dehydrogenase; Provisional
Probab=67.05 E-value=69 Score=27.16 Aligned_cols=76 Identities=11% Similarity=0.042 Sum_probs=45.7
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL 164 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~ 164 (288)
.+||=.| |+|.++..+++.+.. .+.+++.++.++...+...+.+...+ .++.+..+|+.+.
T Consensus 2 ~~vlVtG-asg~iG~~la~~l~~---------------~g~~Vi~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~~~ 62 (263)
T PRK06181 2 KVVIITG-ASEGIGRALAVRLAR---------------AGAQLVLAARNETRLASLAQELADHG---GEALVVPTDVSDA 62 (263)
T ss_pred CEEEEec-CCcHHHHHHHHHHHH---------------CCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEccCCCH
Confidence 3566555 456666666665421 34789999988766555544443332 4677888887653
Q ss_pred C-----C-----CCCCeeEEEeccc
Q 036563 165 C-----F-----EDSTMDGYTIAFG 179 (288)
Q Consensus 165 ~-----~-----~~~~~D~v~~~~~ 179 (288)
. + .-+..|.++.+..
T Consensus 63 ~~~~~~~~~~~~~~~~id~vi~~ag 87 (263)
T PRK06181 63 EACERLIEAAVARFGGIDILVNNAG 87 (263)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCC
Confidence 2 0 0125788887654
No 409
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=67.02 E-value=29 Score=32.39 Aligned_cols=88 Identities=15% Similarity=0.125 Sum_probs=53.6
Q ss_pred CCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcc
Q 036563 82 FPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGD 160 (288)
Q Consensus 82 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d 160 (288)
..+.+|+=+|+|. |......++.. +.+|+++|.++.....+.. .+ ..+. +
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~------------------Ga~ViV~d~dp~r~~~A~~----~G-----~~v~--~ 243 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM------------------GARVIVTEVDPIRALEAAM----DG-----FRVM--T 243 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC------------------cCEEEEEeCChhhHHHHHh----cC-----CEeC--C
Confidence 4578999999997 66666666654 4789999988864433322 11 1211 2
Q ss_pred cccCCCCCCCeeEEEeccccccccCHHHHHH-HHHhhccCCcEEEEEe
Q 036563 161 AEALCFEDSTMDGYTIAFGIRNVTHIEKALA-EAYRVLKRGGRFLCLE 207 (288)
Q Consensus 161 ~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~-~~~~~L~pgG~l~i~~ 207 (288)
..+. . ...|+++..- ....++. +....+|+|+.++.+.
T Consensus 244 leea-l--~~aDVVItaT------G~~~vI~~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 244 MEEA-A--KIGDIFITAT------GNKDVIRGEHFENMKDGAIVANIG 282 (406)
T ss_pred HHHH-H--hcCCEEEECC------CCHHHHHHHHHhcCCCCcEEEEEC
Confidence 2221 1 2468887532 2344454 4778899999888643
No 410
>PRK07806 short chain dehydrogenase; Provisional
Probab=67.00 E-value=75 Score=26.61 Aligned_cols=104 Identities=11% Similarity=0.028 Sum_probs=57.1
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCCh-hHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINP-NMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~-~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
+.++|-.|+ +|.++..+++.+.. .+.++++++.+. ...+.....+...+ .++.++.+|+.
T Consensus 6 ~k~vlItGa-sggiG~~l~~~l~~---------------~G~~V~~~~r~~~~~~~~~~~~l~~~~---~~~~~~~~D~~ 66 (248)
T PRK07806 6 GKTALVTGS-SRGIGADTAKILAG---------------AGAHVVVNYRQKAPRANKVVAEIEAAG---GRASAVGADLT 66 (248)
T ss_pred CcEEEEECC-CCcHHHHHHHHHHH---------------CCCEEEEEeCCchHhHHHHHHHHHhcC---CceEEEEcCCC
Confidence 457887775 45566666665421 346787776543 23333333333222 35777888876
Q ss_pred cCC-----CC-----CCCeeEEEeccccccc-------------cCHHHHHHHHHhhccCCcEEEEE
Q 036563 163 ALC-----FE-----DSTMDGYTIAFGIRNV-------------THIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 163 ~~~-----~~-----~~~~D~v~~~~~l~~~-------------~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+.. +. -+..|.++.+...... .....+++.+.+.++.+|.++++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 67 DEESVAALMDTAREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 542 00 1357887765432111 01345677777777777777754
No 411
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=65.91 E-value=6.9 Score=35.01 Aligned_cols=39 Identities=26% Similarity=0.417 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhh
Q 036563 186 IEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYS 224 (288)
Q Consensus 186 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~ 224 (288)
...+|..+..+|+|||+++++.++..+...++..+..+.
T Consensus 219 L~~~L~~~~~~L~~gGrl~VISfHSLEDRiVK~~f~~~~ 257 (305)
T TIGR00006 219 LEEALQFAPNLLAPGGRLSIISFHSLEDRIVKNFFRELS 257 (305)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCcHHHHHHHHHHHHhc
Confidence 467899999999999999999998877777777665543
No 412
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=65.86 E-value=60 Score=29.42 Aligned_cols=98 Identities=20% Similarity=0.221 Sum_probs=56.7
Q ss_pred cCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 79 LNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 79 l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
....++.+||=.|+|. |..+..+++..+ ...++++|.++...+.+++. +. ..++
T Consensus 182 ~~~~~g~~vlI~g~g~vG~~~~~la~~~G-----------------~~~v~~~~~~~~k~~~~~~~----g~----~~~i 236 (365)
T cd08278 182 LKPRPGSSIAVFGAGAVGLAAVMAAKIAG-----------------CTTIIAVDIVDSRLELAKEL----GA----THVI 236 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-----------------CCeEEEEeCCHHHHHHHHHc----CC----cEEe
Confidence 3455677888887754 566666666653 13699999988776655432 11 1112
Q ss_pred Eccccc----C-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 158 EGDAEA----L-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 158 ~~d~~~----~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
..+-.+ + ......+|+++-... ....+..+.+.|+++|.++...
T Consensus 237 ~~~~~~~~~~v~~~~~~~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 237 NPKEEDLVAAIREITGGGVDYALDTTG------VPAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred cCCCcCHHHHHHHHhCCCCcEEEECCC------CcHHHHHHHHHhccCCEEEEeC
Confidence 111111 1 011345888874221 1235778889999999988754
No 413
>PRK08265 short chain dehydrogenase; Provisional
Probab=65.48 E-value=86 Score=26.72 Aligned_cols=74 Identities=11% Similarity=0.083 Sum_probs=44.3
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+.++|=.|+ +|.++..+++.+.. .+.+|+.+|.+++.++...+.. + .++.++.+|+.+
T Consensus 6 ~k~vlItGa-s~gIG~~ia~~l~~---------------~G~~V~~~~r~~~~~~~~~~~~---~---~~~~~~~~Dl~~ 63 (261)
T PRK08265 6 GKVAIVTGG-ATLIGAAVARALVA---------------AGARVAIVDIDADNGAAVAASL---G---ERARFIATDITD 63 (261)
T ss_pred CCEEEEECC-CChHHHHHHHHHHH---------------CCCEEEEEeCCHHHHHHHHHHh---C---CeeEEEEecCCC
Confidence 456776665 45566666665421 3478999998876544443322 1 357788888865
Q ss_pred CC-----C-----CCCCeeEEEeccc
Q 036563 164 LC-----F-----EDSTMDGYTIAFG 179 (288)
Q Consensus 164 ~~-----~-----~~~~~D~v~~~~~ 179 (288)
.. + .-+..|+++.+..
T Consensus 64 ~~~~~~~~~~~~~~~g~id~lv~~ag 89 (261)
T PRK08265 64 DAAIERAVATVVARFGRVDILVNLAC 89 (261)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 41 0 0135788877654
No 414
>PRK06940 short chain dehydrogenase; Provisional
Probab=65.01 E-value=92 Score=26.90 Aligned_cols=99 Identities=18% Similarity=0.180 Sum_probs=58.8
Q ss_pred eEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCC
Q 036563 86 KHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC 165 (288)
Q Consensus 86 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~ 165 (288)
.+|=-|+ |.++..+++.+. .+.+++.+|.++..++...+.+...+ .++.++.+|+.+..
T Consensus 4 ~~lItGa--~gIG~~la~~l~----------------~G~~Vv~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dv~d~~ 62 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVG----------------AGKKVLLADYNEENLEAAAKTLREAG---FDVSTQEVDVSSRE 62 (275)
T ss_pred EEEEECC--ChHHHHHHHHHh----------------CCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEeecCCHH
Confidence 4454454 467888877763 35789999988766655554443322 35777888876531
Q ss_pred ---------CCCCCeeEEEeccccccc-cCH-----------HHHHHHHHhhccCCcEEEE
Q 036563 166 ---------FEDSTMDGYTIAFGIRNV-THI-----------EKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 166 ---------~~~~~~D~v~~~~~l~~~-~~~-----------~~~l~~~~~~L~pgG~l~i 205 (288)
...+..|.++.+...... .++ ..+++.+.+.++++|.+++
T Consensus 63 ~i~~~~~~~~~~g~id~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~ 123 (275)
T PRK06940 63 SVKALAATAQTLGPVTGLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVV 123 (275)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEE
Confidence 011468998876654322 122 2235666666666666554
No 415
>PRK07109 short chain dehydrogenase; Provisional
Probab=64.37 E-value=1.1e+02 Score=27.50 Aligned_cols=78 Identities=10% Similarity=-0.007 Sum_probs=48.1
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+.+||=.|+ +|.++..+++.+.. .+.+++.++.++..++...+.+...+ .++.++.+|+.+
T Consensus 8 ~k~vlITGa-s~gIG~~la~~la~---------------~G~~Vvl~~R~~~~l~~~~~~l~~~g---~~~~~v~~Dv~d 68 (334)
T PRK07109 8 RQVVVITGA-SAGVGRATARAFAR---------------RGAKVVLLARGEEGLEALAAEIRAAG---GEALAVVADVAD 68 (334)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHH---------------CCCEEEEEECCHHHHHHHHHHHHHcC---CcEEEEEecCCC
Confidence 456776665 45555555555421 34789999988877766665555443 357788888765
Q ss_pred CC----------CCCCCeeEEEecccc
Q 036563 164 LC----------FEDSTMDGYTIAFGI 180 (288)
Q Consensus 164 ~~----------~~~~~~D~v~~~~~l 180 (288)
.. ..-+..|+++.+...
T Consensus 69 ~~~v~~~~~~~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 69 AEAVQAAADRAEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCc
Confidence 31 011368988876543
No 416
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=64.26 E-value=41 Score=29.91 Aligned_cols=100 Identities=16% Similarity=0.070 Sum_probs=56.6
Q ss_pred cCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 79 LNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 79 l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
+...++.+||=.|+|. |..+..+++.. +.++++++.+++.++.+++. +.. .-+...
T Consensus 159 ~~~~~~~~vlV~g~g~iG~~~~~~a~~~------------------G~~vi~~~~~~~~~~~~~~~----g~~-~~i~~~ 215 (333)
T cd08296 159 SGAKPGDLVAVQGIGGLGHLAVQYAAKM------------------GFRTVAISRGSDKADLARKL----GAH-HYIDTS 215 (333)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHC------------------CCeEEEEeCChHHHHHHHHc----CCc-EEecCC
Confidence 4556677888888653 55666666664 36789999888777766432 111 001111
Q ss_pred EcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 158 EGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 158 ~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
..+..........+|+++... .....+....+.|+++|.++...
T Consensus 216 ~~~~~~~~~~~~~~d~vi~~~------g~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 216 KEDVAEALQELGGAKLILATA------PNAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred CccHHHHHHhcCCCCEEEECC------CchHHHHHHHHHcccCCEEEEEe
Confidence 111110000012478887421 11346777889999999998654
No 417
>PRK07774 short chain dehydrogenase; Provisional
Probab=64.11 E-value=81 Score=26.42 Aligned_cols=78 Identities=15% Similarity=0.115 Sum_probs=47.5
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
++++|=.| |+|.++..+++.+.. .+.+++.++.++...+.........+ .++.++..|+.+
T Consensus 6 ~k~vlItG-asg~iG~~la~~l~~---------------~g~~vi~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~ 66 (250)
T PRK07774 6 DKVAIVTG-AAGGIGQAYAEALAR---------------EGASVVVADINAEGAERVAKQIVADG---GTAIAVQVDVSD 66 (250)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHH---------------CCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEcCCCC
Confidence 45677666 566777777776531 34789999987765544444433221 356777888765
Q ss_pred CCC----------CCCCeeEEEecccc
Q 036563 164 LCF----------EDSTMDGYTIAFGI 180 (288)
Q Consensus 164 ~~~----------~~~~~D~v~~~~~l 180 (288)
..- .-+..|+++.+...
T Consensus 67 ~~~~~~~~~~~~~~~~~id~vi~~ag~ 93 (250)
T PRK07774 67 PDSAKAMADATVSAFGGIDYLVNNAAI 93 (250)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 420 01358998876654
No 418
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=63.57 E-value=31 Score=26.73 Aligned_cols=40 Identities=18% Similarity=0.152 Sum_probs=28.5
Q ss_pred CCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccC
Q 036563 168 DSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 168 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
.+.+|+|++.-=- .+...+++.+.+.+.++..+++.....
T Consensus 65 ~~~~D~viv~vKa---~~~~~~l~~l~~~~~~~t~iv~~qNG~ 104 (151)
T PF02558_consen 65 AGPYDLVIVAVKA---YQLEQALQSLKPYLDPNTTIVSLQNGM 104 (151)
T ss_dssp HSTESEEEE-SSG---GGHHHHHHHHCTGEETTEEEEEESSSS
T ss_pred cCCCcEEEEEecc---cchHHHHHHHhhccCCCcEEEEEeCCC
Confidence 4679999875321 245778999999999998887654443
No 419
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=63.28 E-value=55 Score=31.89 Aligned_cols=85 Identities=18% Similarity=0.176 Sum_probs=61.3
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+++||= -.|+|.++..++++...- .-.++..+|.++..+....+.+...-- ..++.++.+|+.+
T Consensus 250 gK~vLV-TGagGSiGsel~~qil~~--------------~p~~i~l~~~~E~~~~~i~~el~~~~~-~~~~~~~igdVrD 313 (588)
T COG1086 250 GKTVLV-TGGGGSIGSELCRQILKF--------------NPKEIILFSRDEYKLYLIDMELREKFP-ELKLRFYIGDVRD 313 (588)
T ss_pred CCEEEE-eCCCCcHHHHHHHHHHhc--------------CCCEEEEecCchHHHHHHHHHHHhhCC-CcceEEEeccccc
Confidence 455554 456788888888775310 237899999999888777777665311 2578899999987
Q ss_pred CC-----CCCCCeeEEEecccccccc
Q 036563 164 LC-----FEDSTMDGYTIAFGIRNVT 184 (288)
Q Consensus 164 ~~-----~~~~~~D~v~~~~~l~~~~ 184 (288)
.. +.+.+.|+|+-..++.|.+
T Consensus 314 ~~~~~~~~~~~kvd~VfHAAA~KHVP 339 (588)
T COG1086 314 RDRVERAMEGHKVDIVFHAAALKHVP 339 (588)
T ss_pred HHHHHHHHhcCCCceEEEhhhhccCc
Confidence 52 5556799999999988886
No 420
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=63.20 E-value=3.9 Score=32.98 Aligned_cols=98 Identities=16% Similarity=0.026 Sum_probs=53.8
Q ss_pred CCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 83 PGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 83 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
++.+|+=+|.|. |.-+..++..++ .+++.+|..+..++........ .+.....+-
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lG------------------a~v~~~d~~~~~~~~~~~~~~~------~i~~~~~~~ 74 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLG------------------AEVVVPDERPERLRQLESLGAY------FIEVDYEDH 74 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-------------------EEEEEESSHHHHHHHHHTTTE------ESEETTTTT
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCC------------------CEEEeccCCHHHHHhhhcccCc------eEEEccccc
Confidence 457999999996 778888888874 8999999988776665443211 122210000
Q ss_pred c-----------cCC------CC--CCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEE
Q 036563 162 E-----------ALC------FE--DSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 162 ~-----------~~~------~~--~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~ 204 (288)
. ..+ +. -..+|+|+.+.....-..+.-+-++..+.|+|+..++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIv 136 (168)
T PF01262_consen 75 LERKDFDKADYYEHPESYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIV 136 (168)
T ss_dssp TTSB-CCHHHCHHHCCHHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEE
T ss_pred ccccccchhhhhHHHHHhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEE
Confidence 0 000 00 1247888876654433334334455667778776665
No 421
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=63.00 E-value=75 Score=25.19 Aligned_cols=109 Identities=11% Similarity=0.060 Sum_probs=57.1
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc--
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE-- 162 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~-- 162 (288)
.++||+-+|.|-....+-+.... .+....++..+.+.....+...+.+...+ +.+...-..
T Consensus 6 ~~~~d~hpGaGKTr~vlp~~~~~------------~i~~~~rvLvL~PTRvva~em~~aL~~~~-----~~~~t~~~~~~ 68 (148)
T PF07652_consen 6 LTVLDLHPGAGKTRRVLPEIVRE------------AIKRRLRVLVLAPTRVVAEEMYEALKGLP-----VRFHTNARMRT 68 (148)
T ss_dssp EEEEE--TTSSTTTTHHHHHHHH------------HHHTT--EEEEESSHHHHHHHHHHTTTSS-----EEEESTTSS--
T ss_pred eeEEecCCCCCCcccccHHHHHH------------HHHccCeEEEecccHHHHHHHHHHHhcCC-----cccCceeeecc
Confidence 47999999999766544432210 00045789999999988888877775442 222211110
Q ss_pred ----c---------------CCCCCCCeeEEEeccccccccCHHHH-HHHHHhhccCCc--EEEEEeccCCC
Q 036563 163 ----A---------------LCFEDSTMDGYTIAFGIRNVTHIEKA-LAEAYRVLKRGG--RFLCLELSHVD 212 (288)
Q Consensus 163 ----~---------------~~~~~~~~D~v~~~~~l~~~~~~~~~-l~~~~~~L~pgG--~l~i~~~~~~~ 212 (288)
. .+..-..||+||+..+ |+.|+..+ .....+.+...| .++.+.-++|.
T Consensus 69 ~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEc--H~~Dp~sIA~rg~l~~~~~~g~~~~i~mTATPPG 138 (148)
T PF07652_consen 69 HFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDEC--HFTDPTSIAARGYLRELAESGEAKVIFMTATPPG 138 (148)
T ss_dssp --SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTT--T--SHHHHHHHHHHHHHHHTTS-EEEEEESS-TT
T ss_pred ccCCCcccccccHHHHHHhcCcccccCccEEEEecc--ccCCHHHHhhheeHHHhhhccCeeEEEEeCCCCC
Confidence 0 0122346999999887 66777553 333334444444 56666666553
No 422
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=62.98 E-value=33 Score=26.45 Aligned_cols=79 Identities=11% Similarity=-0.003 Sum_probs=43.8
Q ss_pred CCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEc
Q 036563 81 PFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEG 159 (288)
Q Consensus 81 ~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~ 159 (288)
...+.++|=+|+|. |......+...+ ..+++.+.-+.+..+...+.+.. .++.+...
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g-----------------~~~i~i~nRt~~ra~~l~~~~~~-----~~~~~~~~ 66 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALG-----------------AKEITIVNRTPERAEALAEEFGG-----VNIEAIPL 66 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTT-----------------SSEEEEEESSHHHHHHHHHHHTG-----CSEEEEEG
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcC-----------------CCEEEEEECCHHHHHHHHHHcCc-----cccceeeH
Confidence 34578999999864 333322222221 25699999887766555555421 24555544
Q ss_pred ccccCCCCCCCeeEEEeccccccc
Q 036563 160 DAEALCFEDSTMDGYTIAFGIRNV 183 (288)
Q Consensus 160 d~~~~~~~~~~~D~v~~~~~l~~~ 183 (288)
+ ++...-..+|+|+..-.....
T Consensus 67 ~--~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 67 E--DLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp G--GHCHHHHTESEEEE-SSTTST
T ss_pred H--HHHHHHhhCCeEEEecCCCCc
Confidence 3 222112369999987665443
No 423
>PRK06914 short chain dehydrogenase; Provisional
Probab=62.85 E-value=99 Score=26.52 Aligned_cols=78 Identities=9% Similarity=-0.040 Sum_probs=45.5
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL 164 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~ 164 (288)
.++|=.|+ +|.++..+++.+.. .+.++++++-+++..+.........+.. .++.++.+|+.+.
T Consensus 4 k~~lItGa-sg~iG~~la~~l~~---------------~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~d~ 66 (280)
T PRK06914 4 KIAIVTGA-SSGFGLLTTLELAK---------------KGYLVIATMRNPEKQENLLSQATQLNLQ-QNIKVQQLDVTDQ 66 (280)
T ss_pred CEEEEECC-CchHHHHHHHHHHh---------------CCCEEEEEeCCHHHHHHHHHHHHhcCCC-CceeEEecCCCCH
Confidence 45676665 45555555555421 3578999988776665554443333222 4688888888653
Q ss_pred CC---------CCCCeeEEEeccc
Q 036563 165 CF---------EDSTMDGYTIAFG 179 (288)
Q Consensus 165 ~~---------~~~~~D~v~~~~~ 179 (288)
.. .-+..|.++.+..
T Consensus 67 ~~~~~~~~~~~~~~~id~vv~~ag 90 (280)
T PRK06914 67 NSIHNFQLVLKEIGRIDLLVNNAG 90 (280)
T ss_pred HHHHHHHHHHHhcCCeeEEEECCc
Confidence 20 0135788877654
No 424
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=62.81 E-value=1.2e+02 Score=27.37 Aligned_cols=43 Identities=12% Similarity=0.167 Sum_probs=29.6
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHH
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVG 140 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a 140 (288)
....|+.+|||.-.....+...... +...++=+|..+......
T Consensus 87 ~~~qivnLGcG~D~l~frL~s~~~~---------------~~~~fievDfp~~~~rKi 129 (335)
T KOG2918|consen 87 GKKQIVNLGAGFDTLYFRLLSSGEL---------------DRVKFIEVDFPEVVERKI 129 (335)
T ss_pred CceEEEEcCCCccchhhhhhccCCC---------------CcceEEEecCcHHHHHHH
Confidence 3457999999998888888777521 345667777766544433
No 425
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=61.74 E-value=47 Score=32.88 Aligned_cols=89 Identities=16% Similarity=0.136 Sum_probs=53.9
Q ss_pred CeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 85 MKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 85 ~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
.+|+=+|||. |......+.. .+.+++.+|.+++.++.+++. ....+.+|..+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~------------------~g~~vvvID~d~~~v~~~~~~---------g~~v~~GDat~ 453 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLS------------------SGVKMTVLDHDPDHIETLRKF---------GMKVFYGDATR 453 (621)
T ss_pred CcEEEEecChHHHHHHHHHHh------------------CCCCEEEEECCHHHHHHHHhc---------CCeEEEEeCCC
Confidence 5787777775 5444333333 246899999999988877542 45678889876
Q ss_pred CC----CCCCCeeEEEeccccccccCHH--HHHHHHHhhccCCcEEEE
Q 036563 164 LC----FEDSTMDGYTIAFGIRNVTHIE--KALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 164 ~~----~~~~~~D~v~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i 205 (288)
.. ..-++.|++++.. +|.+ ..+....+.+.|+-.+++
T Consensus 454 ~~~L~~agi~~A~~vvv~~-----~d~~~n~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 454 MDLLESAGAAKAEVLINAI-----DDPQTSLQLVELVKEHFPHLQIIA 496 (621)
T ss_pred HHHHHhcCCCcCCEEEEEe-----CCHHHHHHHHHHHHHhCCCCeEEE
Confidence 52 2234678777643 2222 223334455567766664
No 426
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=61.32 E-value=1.2e+02 Score=26.84 Aligned_cols=85 Identities=21% Similarity=0.176 Sum_probs=47.5
Q ss_pred CceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEE
Q 036563 124 ETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRF 203 (288)
Q Consensus 124 ~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l 203 (288)
...+++.|.+...++.+... ++.....+.. ........|+|+..-.+.. ...+++++.+.|++|..+
T Consensus 28 ~v~i~g~d~~~~~~~~a~~l---------gv~d~~~~~~-~~~~~~~aD~VivavPi~~---~~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 28 VVRIIGRDRSAATLKAALEL---------GVIDELTVAG-LAEAAAEADLVIVAVPIEA---TEEVLKELAPHLKKGAIV 94 (279)
T ss_pred eEEEEeecCcHHHHHHHhhc---------Ccccccccch-hhhhcccCCEEEEeccHHH---HHHHHHHhcccCCCCCEE
Confidence 35678888888766655432 1211111100 0112335799987665443 467788888888888765
Q ss_pred EEEeccCCChHHHHHHHHHh
Q 036563 204 LCLELSHVDIPVFKELYDYY 223 (288)
Q Consensus 204 ~i~~~~~~~~~~~~~~~~~~ 223 (288)
++.+......+..+....
T Consensus 95 --~Dv~S~K~~v~~a~~~~~ 112 (279)
T COG0287 95 --TDVGSVKSSVVEAMEKYL 112 (279)
T ss_pred --EecccccHHHHHHHHHhc
Confidence 345554455555544444
No 427
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=60.82 E-value=1e+02 Score=27.73 Aligned_cols=97 Identities=22% Similarity=0.222 Sum_probs=55.3
Q ss_pred cCCCCCCeEEEecCC-ccHHHHHHHHhhhhhhhhhhhcccccccCCCc-eEEEEeCChhHHHHHHHHhhhcCCCCCceEE
Q 036563 79 LNPFPGMKHLDVAGG-TGDVAFRILDTVNSIKRRALQDVLEDDLQEET-RIYVCDINPNMLNVGKKRALERGYPDKSLLW 156 (288)
Q Consensus 79 l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~ 156 (288)
....++.+||-.|+| .|..+..+++.. +. .+++++.++...+.+++ . +. ..+
T Consensus 178 ~~~~~g~~vLI~g~g~vG~a~i~lak~~------------------G~~~Vi~~~~~~~~~~~~~~-~---g~----~~v 231 (363)
T cd08279 178 ARVRPGDTVAVIGCGGVGLNAIQGARIA------------------GASRIIAVDPVPEKLELARR-F---GA----THT 231 (363)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc------------------CCCcEEEEcCCHHHHHHHHH-h---CC----eEE
Confidence 344567788888775 355666666654 35 48888887776665532 1 11 111
Q ss_pred EEc---ccc-cC-C-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 157 VEG---DAE-AL-C-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 157 ~~~---d~~-~~-~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
+.. +.. .+ . .+...+|+++-... ....+....+.|+++|.++...
T Consensus 232 v~~~~~~~~~~l~~~~~~~~vd~vld~~~------~~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 232 VNASEDDAVEAVRDLTDGRGADYAFEAVG------RAATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred eCCCCccHHHHHHHHcCCCCCCEEEEcCC------ChHHHHHHHHHhhcCCeEEEEe
Confidence 111 110 01 1 12345898873221 1345778899999999998654
No 428
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=60.54 E-value=43 Score=31.11 Aligned_cols=72 Identities=14% Similarity=0.056 Sum_probs=45.5
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL 164 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~ 164 (288)
++||=|||| ..+..++..+.. . ...+|+..|.+++....+..... .+++....|+.+.
T Consensus 2 ~~ilviGaG--~Vg~~va~~la~------------~--~d~~V~iAdRs~~~~~~i~~~~~------~~v~~~~vD~~d~ 59 (389)
T COG1748 2 MKILVIGAG--GVGSVVAHKLAQ------------N--GDGEVTIADRSKEKCARIAELIG------GKVEALQVDAADV 59 (389)
T ss_pred CcEEEECCc--hhHHHHHHHHHh------------C--CCceEEEEeCCHHHHHHHHhhcc------ccceeEEecccCh
Confidence 479999995 444444444320 0 12799999999887766654422 3688888888775
Q ss_pred C----CCCCCeeEEEeccc
Q 036563 165 C----FEDSTMDGYTIAFG 179 (288)
Q Consensus 165 ~----~~~~~~D~v~~~~~ 179 (288)
+ ... .+|+|+....
T Consensus 60 ~al~~li~-~~d~VIn~~p 77 (389)
T COG1748 60 DALVALIK-DFDLVINAAP 77 (389)
T ss_pred HHHHHHHh-cCCEEEEeCC
Confidence 2 222 3588876443
No 429
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=60.42 E-value=1.1e+02 Score=27.21 Aligned_cols=39 Identities=10% Similarity=-0.026 Sum_probs=26.2
Q ss_pred CCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccC
Q 036563 169 STMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 169 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
..+|+|+..--.+ +...+++.+...+++++.++......
T Consensus 71 ~~~D~vilavK~~---~~~~~~~~l~~~~~~~~~iv~lqNG~ 109 (313)
T PRK06249 71 PPCDWVLVGLKTT---ANALLAPLIPQVAAPDAKVLLLQNGL 109 (313)
T ss_pred CCCCEEEEEecCC---ChHhHHHHHhhhcCCCCEEEEecCCC
Confidence 4689887654322 34567788888899999877654433
No 430
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=60.31 E-value=10 Score=33.82 Aligned_cols=38 Identities=26% Similarity=0.524 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHh
Q 036563 186 IEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYY 223 (288)
Q Consensus 186 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~ 223 (288)
...+|..+..+|+|||+++++.++..+...++..+..+
T Consensus 215 L~~~L~~~~~~L~~gGrl~visfHSlEDriVK~~f~~~ 252 (296)
T PRK00050 215 LERALEAALDLLKPGGRLAVISFHSLEDRIVKRFFREL 252 (296)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCcHHHHHHHHHHHHh
Confidence 46789999999999999999999887777777655544
No 431
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=60.23 E-value=1e+02 Score=27.77 Aligned_cols=94 Identities=20% Similarity=0.239 Sum_probs=52.9
Q ss_pred CCCCeEEEecCC-ccHHHHHHHHhhhhhhhhhhhcccccccCCCce-EEEEeCChhHHHHHHHHhhhcCCCCCceEEEEc
Q 036563 82 FPGMKHLDVAGG-TGDVAFRILDTVNSIKRRALQDVLEDDLQEETR-IYVCDINPNMLNVGKKRALERGYPDKSLLWVEG 159 (288)
Q Consensus 82 ~~~~~vLDiG~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~ 159 (288)
.++.+||=.|+| .|..+..+++.. +.. +++++.++...+.+++ . +. ..++..
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~------------------G~~~vi~~~~s~~~~~~~~~-~---g~----~~v~~~ 239 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAF------------------GASPIIAVDVRDEKLAKAKE-L---GA----THTVNA 239 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc------------------CCCeEEEEeCCHHHHHHHHH-h---CC----ceEecC
Confidence 566777766654 255555555554 245 8888888776665533 1 11 112211
Q ss_pred ccccC------CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 160 DAEAL------CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 160 d~~~~------~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
+-... ......+|+|+-. .... ..+..+.+.|+++|.++...
T Consensus 240 ~~~~~~~~l~~~~~~~~~d~vld~-----vg~~-~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 240 AKEDAVAAIREITGGRGVDVVVEA-----LGKP-ETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred CcccHHHHHHHHhCCCCCCEEEEe-----CCCH-HHHHHHHHHHhcCCEEEEEc
Confidence 11111 1123458988742 1222 35777889999999998653
No 432
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=60.19 E-value=44 Score=29.70 Aligned_cols=89 Identities=17% Similarity=0.054 Sum_probs=50.9
Q ss_pred CCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 83 PGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 83 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.+.+|+=+|+|. |......+... +.+++++|.++...+.++. .+ ..+.. .
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~------------------Ga~V~v~~r~~~~~~~~~~----~G-----~~~~~--~ 201 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL------------------GANVTVGARKSAHLARITE----MG-----LSPFH--L 201 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC------------------CCEEEEEECCHHHHHHHHH----cC-----Ceeec--H
Confidence 478999999975 44444444443 4799999999876554432 22 22221 1
Q ss_pred ccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
.++...-..+|+|+..-.. .-.-++..+.++|++.++-+
T Consensus 202 ~~l~~~l~~aDiVI~t~p~------~~i~~~~l~~~~~g~vIIDl 240 (296)
T PRK08306 202 SELAEEVGKIDIIFNTIPA------LVLTKEVLSKMPPEALIIDL 240 (296)
T ss_pred HHHHHHhCCCCEEEECCCh------hhhhHHHHHcCCCCcEEEEE
Confidence 1111111358999874321 11234566778998877643
No 433
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=60.16 E-value=39 Score=31.81 Aligned_cols=87 Identities=16% Similarity=0.180 Sum_probs=51.8
Q ss_pred CCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 83 PGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 83 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.+.+|+=+|+|. |......+... +.+|+++|.++.....+.. .+ ..+. ++
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~------------------Ga~ViV~d~dp~ra~~A~~----~G-----~~v~--~l 261 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGL------------------GARVIVTEVDPICALQAAM----DG-----FRVM--TM 261 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC------------------CCEEEEEcCCchhhHHHHh----cC-----CEec--CH
Confidence 577899999986 55444445544 4789999998865433322 11 1111 22
Q ss_pred ccCCCCCCCeeEEEeccccccccCHHHHHH-HHHhhccCCcEEEEEe
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTHIEKALA-EAYRVLKRGGRFLCLE 207 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~-~~~~~L~pgG~l~i~~ 207 (288)
.+. -..+|+|+..- ....++. .....+|+|+.++.+.
T Consensus 262 ~ea---l~~aDVVI~aT------G~~~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 262 EEA---AELGDIFVTAT------GNKDVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred HHH---HhCCCEEEECC------CCHHHHHHHHHhcCCCCCEEEEcC
Confidence 221 12579887532 2233554 6778899999887643
No 434
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=60.07 E-value=34 Score=27.21 Aligned_cols=88 Identities=11% Similarity=0.060 Sum_probs=46.4
Q ss_pred eEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCC
Q 036563 86 KHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC 165 (288)
Q Consensus 86 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~ 165 (288)
+|-=||+ |..+..++.++.. .+.++++.|.+++..+...+. ..... .+..+..
T Consensus 3 ~Ig~IGl--G~mG~~~a~~L~~---------------~g~~v~~~d~~~~~~~~~~~~---------g~~~~-~s~~e~~ 55 (163)
T PF03446_consen 3 KIGFIGL--GNMGSAMARNLAK---------------AGYEVTVYDRSPEKAEALAEA---------GAEVA-DSPAEAA 55 (163)
T ss_dssp EEEEE----SHHHHHHHHHHHH---------------TTTEEEEEESSHHHHHHHHHT---------TEEEE-SSHHHHH
T ss_pred EEEEEch--HHHHHHHHHHHHh---------------cCCeEEeeccchhhhhhhHHh---------hhhhh-hhhhhHh
Confidence 4455665 4555555555421 347899999998776655442 22222 2222221
Q ss_pred CCCCCeeEEEeccccccccCHHHHHHH--HHhhccCCcEEEE
Q 036563 166 FEDSTMDGYTIAFGIRNVTHIEKALAE--AYRVLKRGGRFLC 205 (288)
Q Consensus 166 ~~~~~~D~v~~~~~l~~~~~~~~~l~~--~~~~L~pgG~l~i 205 (288)
...|+|+.... .-...+.++.. +...|++|..++-
T Consensus 56 ---~~~dvvi~~v~--~~~~v~~v~~~~~i~~~l~~g~iiid 92 (163)
T PF03446_consen 56 ---EQADVVILCVP--DDDAVEAVLFGENILAGLRPGKIIID 92 (163)
T ss_dssp ---HHBSEEEE-SS--SHHHHHHHHHCTTHGGGS-TTEEEEE
T ss_pred ---hcccceEeecc--cchhhhhhhhhhHHhhccccceEEEe
Confidence 23588875332 21234556666 7777777776653
No 435
>PLN00203 glutamyl-tRNA reductase
Probab=59.87 E-value=93 Score=30.14 Aligned_cols=107 Identities=9% Similarity=0.106 Sum_probs=52.3
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
.+.+|+=||+| ..+..++..+... ...+++.++.++...+....... + ..+.+. +..
T Consensus 265 ~~kkVlVIGAG--~mG~~~a~~L~~~--------------G~~~V~V~nRs~era~~La~~~~--g---~~i~~~--~~~ 321 (519)
T PLN00203 265 ASARVLVIGAG--KMGKLLVKHLVSK--------------GCTKMVVVNRSEERVAALREEFP--D---VEIIYK--PLD 321 (519)
T ss_pred CCCEEEEEeCH--HHHHHHHHHHHhC--------------CCCeEEEEeCCHHHHHHHHHHhC--C---CceEee--cHh
Confidence 36789999885 4554444443210 12479999998876655444331 1 112222 222
Q ss_pred cCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccC-CcEEEEEeccCCC
Q 036563 163 ALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKR-GGRFLCLELSHVD 212 (288)
Q Consensus 163 ~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~p-gG~l~i~~~~~~~ 212 (288)
+....-...|+|++.-.-.+.--....++.+.+.-+. +..++++|...|.
T Consensus 322 dl~~al~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR 372 (519)
T PLN00203 322 EMLACAAEADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPR 372 (519)
T ss_pred hHHHHHhcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence 2211123589988754332221123344444322111 2346667777663
No 436
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=59.69 E-value=62 Score=27.63 Aligned_cols=72 Identities=14% Similarity=0.094 Sum_probs=46.6
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChh-HHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPN-MLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~-~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
...||=.||..|.++..++.++.. +++.|+++--+-+ |.+.+.+ .++.....|+.
T Consensus 7 ~k~VlItgcs~GGIG~ala~ef~~---------------~G~~V~AtaR~~e~M~~L~~~---------~gl~~~kLDV~ 62 (289)
T KOG1209|consen 7 PKKVLITGCSSGGIGYALAKEFAR---------------NGYLVYATARRLEPMAQLAIQ---------FGLKPYKLDVS 62 (289)
T ss_pred CCeEEEeecCCcchhHHHHHHHHh---------------CCeEEEEEccccchHhhHHHh---------hCCeeEEeccC
Confidence 457999999999999999998742 4578887765444 3333322 13455555554
Q ss_pred cC-----------CCCCCCeeEEEeccc
Q 036563 163 AL-----------CFEDSTMDGYTIAFG 179 (288)
Q Consensus 163 ~~-----------~~~~~~~D~v~~~~~ 179 (288)
+. .+++++.|+.+-+..
T Consensus 63 ~~~~V~~v~~evr~~~~Gkld~L~NNAG 90 (289)
T KOG1209|consen 63 KPEEVVTVSGEVRANPDGKLDLLYNNAG 90 (289)
T ss_pred ChHHHHHHHHHHhhCCCCceEEEEcCCC
Confidence 42 246778888775443
No 437
>PRK06701 short chain dehydrogenase; Provisional
Probab=59.44 E-value=1.2e+02 Score=26.44 Aligned_cols=106 Identities=17% Similarity=0.162 Sum_probs=57.3
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChh-HHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPN-MLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~-~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
+++++|=.|+ +|.++..+++.+.. .+.+++.++.++. ..+.....+...+ .++.++.+|+
T Consensus 45 ~~k~iLItGa-sggIG~~la~~l~~---------------~G~~V~l~~r~~~~~~~~~~~~~~~~~---~~~~~~~~Dl 105 (290)
T PRK06701 45 KGKVALITGG-DSGIGRAVAVLFAK---------------EGADIAIVYLDEHEDANETKQRVEKEG---VKCLLIPGDV 105 (290)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHH---------------CCCEEEEEeCCcchHHHHHHHHHHhcC---CeEEEEEccC
Confidence 3567877776 45555555555421 3478888877643 2333333333222 3577888887
Q ss_pred ccCC-----CC-----CCCeeEEEecccccc----ccC----------------HHHHHHHHHhhccCCcEEEEEe
Q 036563 162 EALC-----FE-----DSTMDGYTIAFGIRN----VTH----------------IEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 162 ~~~~-----~~-----~~~~D~v~~~~~l~~----~~~----------------~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
.+.. +. -...|.++.+..... +.+ ...+++.+.+.++++|.++.+.
T Consensus 106 ~~~~~~~~~~~~i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 106 SDEAFCKDAVEETVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 6531 00 135788876544321 110 1234556667677778877643
No 438
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=58.85 E-value=25 Score=31.30 Aligned_cols=50 Identities=16% Similarity=0.268 Sum_probs=36.1
Q ss_pred hcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh
Q 036563 78 KLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE 146 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 146 (288)
.+....+.+|+-+|+|.-.....+... ..+|.++|+++..+...+.++..
T Consensus 58 am~~g~ghrivtigSGGcn~L~ylsr~-------------------Pa~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 58 AMQLGIGHRIVTIGSGGCNMLAYLSRA-------------------PARIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred HHhcCCCcEEEEecCCcchHHHHhhcC-------------------CceeEEEeCCHHHHHHHHHHHHH
Confidence 334456779999999876666555544 38999999999988776665543
No 439
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=58.54 E-value=33 Score=27.58 Aligned_cols=62 Identities=19% Similarity=0.224 Sum_probs=31.8
Q ss_pred HHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcC
Q 036563 187 EKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAG 266 (288)
Q Consensus 187 ~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 266 (288)
..+++-+.+.|.|||.+++. ... +..+...+..-. .+....+-..|.++|
T Consensus 66 ~~l~~~~~~~l~pg~~lfVe-Y~~-D~eT~~~L~~G~----------------------------pp~~TrLG~~Ll~~G 115 (170)
T PF06557_consen 66 DELYKLFSRYLEPGGRLFVE-YVE-DRETRRQLQRGV----------------------------PPAETRLGFSLLKAG 115 (170)
T ss_dssp HHHHHHHHTT----SEEEEE--TT--HHHHHHHHTT------------------------------GGGSHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhcCeEEEE-Eec-CHHHHHHHHcCC----------------------------CcccchhHHHHHhCC
Confidence 45788899999999999963 222 223332222211 112345667899999
Q ss_pred CcEEEEEEeeCC
Q 036563 267 FQKVEYENLVGG 278 (288)
Q Consensus 267 f~~v~~~~~~~~ 278 (288)
|+.+..+.+..|
T Consensus 116 FtwfKdWYfPEG 127 (170)
T PF06557_consen 116 FTWFKDWYFPEG 127 (170)
T ss_dssp --EEEEEE--TT
T ss_pred cEEEeeeeccCc
Confidence 999998877654
No 440
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=58.12 E-value=70 Score=26.85 Aligned_cols=83 Identities=14% Similarity=0.064 Sum_probs=50.3
Q ss_pred CCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCC----------CCC-CCeeEEEeccccccc----c---
Q 036563 123 EETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC----------FED-STMDGYTIAFGIRNV----T--- 184 (288)
Q Consensus 123 ~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~----------~~~-~~~D~v~~~~~l~~~----~--- 184 (288)
.+++|+.++.+++.++...+.+.... ...++..|+.+.. ..- +..|+++.+...... .
T Consensus 19 ~Ga~V~~~~~~~~~~~~~~~~l~~~~----~~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~~a~~~~~~~~~~~~~ 94 (241)
T PF13561_consen 19 EGANVILTDRNEEKLADALEELAKEY----GAEVIQCDLSDEESVEALFDEAVERFGGRIDILVNNAGISPPSNVEKPLL 94 (241)
T ss_dssp TTEEEEEEESSHHHHHHHHHHHHHHT----TSEEEESCTTSHHHHHHHHHHHHHHHCSSESEEEEEEESCTGGGTSSSGG
T ss_pred CCCEEEEEeCChHHHHHHHHHHHHHc----CCceEeecCcchHHHHHHHHHHHhhcCCCeEEEEecccccccccCCCChH
Confidence 35899999999987644444443321 2335888876431 111 679988765433221 1
Q ss_pred C----------------HHHHHHHHHhhccCCcEEEEEecc
Q 036563 185 H----------------IEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 185 ~----------------~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
+ ...+.+.+.+.++++|.++.+...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~ 135 (241)
T PF13561_consen 95 DLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSI 135 (241)
T ss_dssp GSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEG
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccch
Confidence 1 123466777788899998876443
No 441
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=57.82 E-value=1.4e+02 Score=26.54 Aligned_cols=103 Identities=16% Similarity=0.070 Sum_probs=56.4
Q ss_pred CeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC---CCceEEEEcc
Q 036563 85 MKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP---DKSLLWVEGD 160 (288)
Q Consensus 85 ~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~---~~~v~~~~~d 160 (288)
++|+=+|+|. |.+....+... +.+|+.++-+++.++..++. .++. ..........
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~------------------G~~V~lv~r~~~~~~~i~~~---~Gl~i~~~g~~~~~~~~ 61 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA------------------GLPVRLILRDRQRLAAYQQA---GGLTLVEQGQASLYAIP 61 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC------------------CCCeEEEEechHHHHHHhhc---CCeEEeeCCcceeeccC
Confidence 5789999986 55433333332 36899999876555544331 1110 0000111111
Q ss_pred cccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCC
Q 036563 161 AEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVD 212 (288)
Q Consensus 161 ~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 212 (288)
.. .+.+.+.+|+|+..-=- .+...+++.+...+.++..++........
T Consensus 62 ~~-~~~~~~~~D~viv~vK~---~~~~~al~~l~~~l~~~t~vv~lQNGv~~ 109 (305)
T PRK05708 62 AE-TADAAEPIHRLLLACKA---YDAEPAVASLAHRLAPGAELLLLQNGLGS 109 (305)
T ss_pred CC-CcccccccCEEEEECCH---HhHHHHHHHHHhhCCCCCEEEEEeCCCCC
Confidence 11 01123468988764321 14567889999999999988766554443
No 442
>PRK08267 short chain dehydrogenase; Provisional
Probab=57.82 E-value=1.2e+02 Score=25.72 Aligned_cols=74 Identities=15% Similarity=0.004 Sum_probs=46.1
Q ss_pred eEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCC
Q 036563 86 KHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC 165 (288)
Q Consensus 86 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~ 165 (288)
++|=.|++ |.++..+++.+.. .+.++..++.+++.++....... + .++.++.+|+.+..
T Consensus 3 ~vlItGas-g~iG~~la~~l~~---------------~G~~V~~~~r~~~~~~~~~~~~~--~---~~~~~~~~D~~~~~ 61 (260)
T PRK08267 3 SIFITGAA-SGIGRATALLFAA---------------EGWRVGAYDINEAGLAALAAELG--A---GNAWTGALDVTDRA 61 (260)
T ss_pred EEEEeCCC-chHHHHHHHHHHH---------------CCCeEEEEeCCHHHHHHHHHHhc--C---CceEEEEecCCCHH
Confidence 46666654 5666666665421 34789999988876665544332 1 46888888887632
Q ss_pred --------C-C--CCCeeEEEecccc
Q 036563 166 --------F-E--DSTMDGYTIAFGI 180 (288)
Q Consensus 166 --------~-~--~~~~D~v~~~~~l 180 (288)
. . .+.+|.++.+...
T Consensus 62 ~v~~~~~~~~~~~~~~id~vi~~ag~ 87 (260)
T PRK08267 62 AWDAALADFAAATGGRLDVLFNNAGI 87 (260)
T ss_pred HHHHHHHHHHHHcCCCCCEEEECCCC
Confidence 0 0 3468998876654
No 443
>PRK05872 short chain dehydrogenase; Provisional
Probab=57.73 E-value=1.3e+02 Score=26.27 Aligned_cols=78 Identities=13% Similarity=0.116 Sum_probs=45.9
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.++|=.|++ |.++..+++.+.. .+.+++.++.+++.++...+.+.. + ..+..+.+|+.
T Consensus 8 ~gk~vlItGas-~gIG~~ia~~l~~---------------~G~~V~~~~r~~~~l~~~~~~l~~-~---~~~~~~~~Dv~ 67 (296)
T PRK05872 8 AGKVVVVTGAA-RGIGAELARRLHA---------------RGAKLALVDLEEAELAALAAELGG-D---DRVLTVVADVT 67 (296)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHH---------------CCCEEEEEeCCHHHHHHHHHHhcC-C---CcEEEEEecCC
Confidence 35677766654 4555555555421 357899999888766655444321 1 34555567776
Q ss_pred cCC----------CCCCCeeEEEecccc
Q 036563 163 ALC----------FEDSTMDGYTIAFGI 180 (288)
Q Consensus 163 ~~~----------~~~~~~D~v~~~~~l 180 (288)
+.. ..-+..|+++.+...
T Consensus 68 d~~~v~~~~~~~~~~~g~id~vI~nAG~ 95 (296)
T PRK05872 68 DLAAMQAAAEEAVERFGGIDVVVANAGI 95 (296)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 531 011468999887664
No 444
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=57.69 E-value=1.5e+02 Score=27.66 Aligned_cols=92 Identities=14% Similarity=0.137 Sum_probs=53.8
Q ss_pred eEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCC
Q 036563 86 KHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC 165 (288)
Q Consensus 86 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~ 165 (288)
+|+=+|+ |.++..+++.+.. .+..++++|.+++.++..+.. ..+.++.+|..+..
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~---------------~g~~v~vid~~~~~~~~~~~~--------~~~~~~~gd~~~~~ 56 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSG---------------ENNDVTVIDTDEERLRRLQDR--------LDVRTVVGNGSSPD 56 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHh---------------CCCcEEEEECCHHHHHHHHhh--------cCEEEEEeCCCCHH
Confidence 5666666 6777777776531 247899999999877765542 24677788876531
Q ss_pred ----CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 166 ----FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 166 ----~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
..-..+|.+++...- .+....+....+.+.|.-.+++
T Consensus 57 ~l~~~~~~~a~~vi~~~~~---~~~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 57 VLREAGAEDADLLIAVTDS---DETNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred HHHHcCCCcCCEEEEecCC---hHHHHHHHHHHHHhcCCCeEEE
Confidence 123468887764321 1222234444555545555544
No 445
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=57.43 E-value=56 Score=30.76 Aligned_cols=124 Identities=16% Similarity=0.155 Sum_probs=74.2
Q ss_pred HHHHHHHhhcC---------CCCCCeEEEecC-CccHHHHH--HHHhhhhhhhhhhhcccccccCCCceEEEEeC-ChhH
Q 036563 70 LWKDRLVSKLN---------PFPGMKHLDVAG-GTGDVAFR--ILDTVNSIKRRALQDVLEDDLQEETRIYVCDI-NPNM 136 (288)
Q Consensus 70 ~~~~~~~~~l~---------~~~~~~vLDiG~-G~G~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~-s~~~ 136 (288)
...+++...+. ..++..|+=+|- |+|-.+.. ++..+.. .....-++++|. -|.+
T Consensus 77 iV~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk-------------~~~kvllVaaD~~RpAA 143 (451)
T COG0541 77 IVYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKK-------------KGKKVLLVAADTYRPAA 143 (451)
T ss_pred HHHHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHH-------------cCCceEEEecccCChHH
Confidence 33455665554 234567888875 55543322 2222211 002355778885 6677
Q ss_pred HHHHHHHhhhcCCCCCceEEEEcccccCC----------CCCCCeeEEEecccccc-cc-CHHHHHHHHHhhccCCcEEE
Q 036563 137 LNVGKKRALERGYPDKSLLWVEGDAEALC----------FEDSTMDGYTIAFGIRN-VT-HIEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 137 ~~~a~~~~~~~~~~~~~v~~~~~d~~~~~----------~~~~~~D~v~~~~~l~~-~~-~~~~~l~~~~~~L~pgG~l~ 204 (288)
+++.+......+ +.++..+-...| +....+|+|++.-+=.+ ++ +.-.-+.++++.++|.=.++
T Consensus 144 ~eQL~~La~q~~-----v~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~ll 218 (451)
T COG0541 144 IEQLKQLAEQVG-----VPFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLL 218 (451)
T ss_pred HHHHHHHHHHcC-----CceecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEE
Confidence 788887776653 445544322222 33456999998766332 22 34456889999999999999
Q ss_pred EEeccCC
Q 036563 205 CLELSHV 211 (288)
Q Consensus 205 i~~~~~~ 211 (288)
+++....
T Consensus 219 VvDam~G 225 (451)
T COG0541 219 VVDAMIG 225 (451)
T ss_pred EEecccc
Confidence 9887654
No 446
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=57.16 E-value=41 Score=31.49 Aligned_cols=70 Identities=13% Similarity=0.184 Sum_probs=45.8
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
..+|+=+|+ |.++..+++.+.. .+..++++|.+++..+..++.. .++.++.+|..+
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~---------------~~~~v~vid~~~~~~~~~~~~~-------~~~~~i~gd~~~ 286 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEK---------------EGYSVKLIERDPERAEELAEEL-------PNTLVLHGDGTD 286 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHh---------------CCCeEEEEECCHHHHHHHHHHC-------CCCeEEECCCCC
Confidence 457877777 6666666666531 2478999999998877665542 246678888765
Q ss_pred CC----CCCCCeeEEEec
Q 036563 164 LC----FEDSTMDGYTIA 177 (288)
Q Consensus 164 ~~----~~~~~~D~v~~~ 177 (288)
.. ..-..+|.+++.
T Consensus 287 ~~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 287 QELLEEEGIDEADAFIAL 304 (453)
T ss_pred HHHHHhcCCccCCEEEEC
Confidence 31 223468887753
No 447
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=57.14 E-value=1.4e+02 Score=26.54 Aligned_cols=93 Identities=19% Similarity=0.303 Sum_probs=53.5
Q ss_pred CCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCc-eEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcc
Q 036563 83 PGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEET-RIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGD 160 (288)
Q Consensus 83 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d 160 (288)
++.+||-.|+|. |..+..+++.. +. .+++++.++...+.+++. +.. .++...
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~------------------G~~~v~~~~~~~~~~~~~~~~----g~~----~~~~~~ 228 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKAL------------------GPANIIVVDIDEAKLEAAKAA----GAD----VVVNGS 228 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHc------------------CCCeEEEEeCCHHHHHHHHHh----CCc----EEecCC
Confidence 567888887653 55555566654 24 788888888776666432 211 111111
Q ss_pred ccc----C-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 161 AEA----L-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 161 ~~~----~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
-.. + ....+.+|+++-... ....+....+.|+++|.++...
T Consensus 229 ~~~~~~~~~~~~~~~~d~vid~~g------~~~~~~~~~~~l~~~g~~v~~g 274 (350)
T cd08240 229 DPDAAKRIIKAAGGGVDAVIDFVN------NSATASLAFDILAKGGKLVLVG 274 (350)
T ss_pred CccHHHHHHHHhCCCCcEEEECCC------CHHHHHHHHHHhhcCCeEEEEC
Confidence 100 1 011125888874221 1345788899999999998654
No 448
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=57.10 E-value=74 Score=28.69 Aligned_cols=159 Identities=13% Similarity=0.039 Sum_probs=76.4
Q ss_pred CeEEEecCCc-cH-HHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh-------cCCC----C
Q 036563 85 MKHLDVAGGT-GD-VAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE-------RGYP----D 151 (288)
Q Consensus 85 ~~vLDiG~G~-G~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~-------~~~~----~ 151 (288)
.+|-=||+|+ |. ++..++.. +.+|+..|++++.++.++..+.. .+.. .
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a-------------------G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 68 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH-------------------GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASP 68 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-------------------CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHH
Confidence 4688888885 33 33333332 48999999999887766554321 1110 0
Q ss_pred CceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccc
Q 036563 152 KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAI 231 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (288)
.++.+. .+... .-...|+|+-+- .+...-...+++++.+.++|+..|. ...+.. ....+.... ..-.+.+
T Consensus 69 ~~i~~~-~~l~~---av~~aDlViEav-pE~l~vK~~lf~~l~~~~~~~aIla-SnTS~l---~~s~la~~~-~~p~R~~ 138 (321)
T PRK07066 69 ARLRFV-ATIEA---CVADADFIQESA-PEREALKLELHERISRAAKPDAIIA-SSTSGL---LPTDFYARA-THPERCV 138 (321)
T ss_pred hhceec-CCHHH---HhcCCCEEEECC-cCCHHHHHHHHHHHHHhCCCCeEEE-ECCCcc---CHHHHHHhc-CCcccEE
Confidence 112221 12111 113468776532 2222223567889999999987333 222221 122222221 1112223
Q ss_pred cccccCCCcchhhhHHHHhcCC----ChHHHHHHHHHcCCcEEEEE
Q 036563 232 GELVAGDRGSYQYLVESVRRFP----PQEKFAAMISDAGFQKVEYE 273 (288)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~aGf~~v~~~ 273 (288)
+..+.+++ .+.-+.+-+.... +.+...+++++.|...+.+.
T Consensus 139 g~HffnP~-~~~pLVEVv~g~~T~~e~~~~~~~f~~~lGk~pV~v~ 183 (321)
T PRK07066 139 VGHPFNPV-YLLPLVEVLGGERTAPEAVDAAMGIYRALGMRPLHVR 183 (321)
T ss_pred EEecCCcc-ccCceEEEeCCCCCCHHHHHHHHHHHHHcCCEeEecC
Confidence 33332222 1111222111111 23556778888998888774
No 449
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=56.65 E-value=1.2e+02 Score=25.70 Aligned_cols=106 Identities=15% Similarity=0.120 Sum_probs=58.9
Q ss_pred CCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 83 PGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 83 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|=.|+++ +.++..+++.+.. .+.+++.++.+....+..++...+. ....++.+|+
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~---------------~G~~v~l~~r~~~~~~~~~~~~~~~----~~~~~~~~D~ 69 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRA---------------LGAELAVTYLNDKARPYVEPLAEEL----DAPIFLPLDV 69 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHH---------------cCCEEEEEeCChhhHHHHHHHHHhh----ccceEEecCc
Confidence 356788888876 3666666666531 3478888887754333232222221 1345677787
Q ss_pred ccCC----------CCCCCeeEEEecccccc-------cc--C---HH-----------HHHHHHHhhccCCcEEEEEe
Q 036563 162 EALC----------FEDSTMDGYTIAFGIRN-------VT--H---IE-----------KALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 162 ~~~~----------~~~~~~D~v~~~~~l~~-------~~--~---~~-----------~~l~~~~~~L~pgG~l~i~~ 207 (288)
.+.. ..-+..|+++.+..+.. +. + .. .+.+.+.+.++.+|.++.+.
T Consensus 70 ~~~~~v~~~~~~~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~is 148 (258)
T PRK07533 70 REPGQLEAVFARIAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMS 148 (258)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEe
Confidence 6531 11146898887665321 11 1 11 12456667777788877543
No 450
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=56.22 E-value=1.2e+02 Score=26.86 Aligned_cols=96 Identities=24% Similarity=0.282 Sum_probs=51.8
Q ss_pred CCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCc-eEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEc
Q 036563 82 FPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEET-RIYVCDINPNMLNVGKKRALERGYPDKSLLWVEG 159 (288)
Q Consensus 82 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~ 159 (288)
.++.+||-.|+|. |..+..+++.. +. .+++++.++.....+++. +.. .-+.....
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~------------------G~~~v~~~~~~~~~~~~~~~~----g~~-~~~~~~~~ 218 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAA------------------GASLVIASDPNPYRLELAKKM----GAD-VVINPREE 218 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc------------------CCcEEEEECCCHHHHHHHHHh----Ccc-eeeCcccc
Confidence 4566777777653 55666666664 25 678887666555544432 111 00111111
Q ss_pred cc---ccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 160 DA---EALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 160 d~---~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
+. ... .....+|+++-.-. ....+..+.+.|+++|.++...
T Consensus 219 ~~~~~~~~-~~~~~vd~vld~~g------~~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 219 DVVEVKSV-TDGTGVDVVLEMSG------NPKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred cHHHHHHH-cCCCCCCEEEECCC------CHHHHHHHHHHhccCCEEEEEc
Confidence 11 111 12345888874321 1345677788999999988653
No 451
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=55.76 E-value=1.2e+02 Score=26.87 Aligned_cols=98 Identities=15% Similarity=0.154 Sum_probs=53.7
Q ss_pred cCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 79 LNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 79 l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
+...++.+|+=.|||. |..+..+++.. +.++++++.+++..+.+++ + +.. .++
T Consensus 165 ~~~~~g~~vlV~g~g~vG~~~~~~a~~~------------------G~~v~~~~~~~~~~~~~~~-~---g~~----~vi 218 (337)
T cd05283 165 NGVGPGKRVGVVGIGGLGHLAVKFAKAL------------------GAEVTAFSRSPSKKEDALK-L---GAD----EFI 218 (337)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHc------------------CCeEEEEcCCHHHHHHHHH-c---CCc----EEe
Confidence 3445666766677643 55555555554 3688999988877766643 1 111 111
Q ss_pred EcccccC-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 158 EGDAEAL-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 158 ~~d~~~~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
...-... ......+|+++-... . ...+....+.|+++|.++....
T Consensus 219 ~~~~~~~~~~~~~~~d~v~~~~g-----~-~~~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 219 ATKDPEAMKKAAGSLDLIIDTVS-----A-SHDLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred cCcchhhhhhccCCceEEEECCC-----C-cchHHHHHHHhcCCCEEEEEec
Confidence 1110000 011345888873222 1 1246777889999999887543
No 452
>PRK09072 short chain dehydrogenase; Provisional
Probab=55.54 E-value=1.3e+02 Score=25.53 Aligned_cols=77 Identities=16% Similarity=0.215 Sum_probs=46.8
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+.++|=.|++ |.++..+++.+.. .+.+|++++.++..++...... .. + .++.++.+|+.+
T Consensus 5 ~~~vlItG~s-~~iG~~ia~~l~~---------------~G~~V~~~~r~~~~~~~~~~~~-~~--~-~~~~~~~~D~~d 64 (263)
T PRK09072 5 DKRVLLTGAS-GGIGQALAEALAA---------------AGARLLLVGRNAEKLEALAARL-PY--P-GRHRWVVADLTS 64 (263)
T ss_pred CCEEEEECCC-chHHHHHHHHHHH---------------CCCEEEEEECCHHHHHHHHHHH-hc--C-CceEEEEccCCC
Confidence 4567767665 4555555555421 3578999998887666555444 11 1 468888888865
Q ss_pred CC---------CCCCCeeEEEecccc
Q 036563 164 LC---------FEDSTMDGYTIAFGI 180 (288)
Q Consensus 164 ~~---------~~~~~~D~v~~~~~l 180 (288)
.. ...+..|.++.+...
T Consensus 65 ~~~~~~~~~~~~~~~~id~lv~~ag~ 90 (263)
T PRK09072 65 EAGREAVLARAREMGGINVLINNAGV 90 (263)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 42 001457888876554
No 453
>PRK07454 short chain dehydrogenase; Provisional
Probab=55.07 E-value=1e+02 Score=25.67 Aligned_cols=78 Identities=8% Similarity=-0.092 Sum_probs=48.8
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
..++|=.|+ +|.++..+++.+.. .+.+|++++.++...+...+.....+ .++.++.+|+.+
T Consensus 6 ~k~vlItG~-sg~iG~~la~~l~~---------------~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~ 66 (241)
T PRK07454 6 MPRALITGA-SSGIGKATALAFAK---------------AGWDLALVARSQDALEALAAELRSTG---VKAAAYSIDLSN 66 (241)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHH---------------CCCEEEEEeCCHHHHHHHHHHHHhCC---CcEEEEEccCCC
Confidence 346777764 67777777776531 34789999988776655544443322 367888888865
Q ss_pred CC-----CC-----CCCeeEEEecccc
Q 036563 164 LC-----FE-----DSTMDGYTIAFGI 180 (288)
Q Consensus 164 ~~-----~~-----~~~~D~v~~~~~l 180 (288)
.. +. -+..|.++.+...
T Consensus 67 ~~~~~~~~~~~~~~~~~id~lv~~ag~ 93 (241)
T PRK07454 67 PEAIAPGIAELLEQFGCPDVLINNAGM 93 (241)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 42 00 1357888876553
No 454
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=54.68 E-value=1.6e+02 Score=26.66 Aligned_cols=103 Identities=17% Similarity=0.158 Sum_probs=56.5
Q ss_pred hcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEE
Q 036563 78 KLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLW 156 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~ 156 (288)
.....++.+||=.|+|. |..+..+++..+ ...+++++.++...+.+++. +.. .-+..
T Consensus 178 ~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G-----------------~~~v~~~~~~~~~~~~~~~~----g~~-~~v~~ 235 (365)
T cd05279 178 TAKVTPGSTCAVFGLGGVGLSVIMGCKAAG-----------------ASRIIAVDINKDKFEKAKQL----GAT-ECINP 235 (365)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcC-----------------CCeEEEEeCCHHHHHHHHHh----CCC-eeccc
Confidence 34456677888787753 555555555542 13578888888777766432 111 11111
Q ss_pred EEc--cccc-C-CCCCCCeeEEEeccccccccCHHHHHHHHHhhcc-CCcEEEEEec
Q 036563 157 VEG--DAEA-L-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLK-RGGRFLCLEL 208 (288)
Q Consensus 157 ~~~--d~~~-~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~i~~~ 208 (288)
... +... + ....+.+|+++-.. .....+....+.|+ ++|.++....
T Consensus 236 ~~~~~~~~~~l~~~~~~~~d~vid~~------g~~~~~~~~~~~l~~~~G~~v~~g~ 286 (365)
T cd05279 236 RDQDKPIVEVLTEMTDGGVDYAFEVI------GSADTLKQALDATRLGGGTSVVVGV 286 (365)
T ss_pred ccccchHHHHHHHHhCCCCcEEEECC------CCHHHHHHHHHHhccCCCEEEEEec
Confidence 111 1100 0 11124588887321 11346777888899 9999987543
No 455
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=53.75 E-value=89 Score=27.39 Aligned_cols=98 Identities=16% Similarity=0.102 Sum_probs=47.3
Q ss_pred cCCCCCCeEEEecCCccH---HHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 79 LNPFPGMKHLDVAGGTGD---VAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 79 l~~~~~~~vLDiG~G~G~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
+..+.++|||-+|+|+-. .+..++++. .|.++-++-.|+.+-. . +.-.
T Consensus 57 laVP~nMrVlHlGAgSdkGvaPGt~VLrqw---------------lP~~ailvDnDi~d~v--------S------Da~~ 107 (299)
T PF06460_consen 57 LAVPHNMRVLHLGAGSDKGVAPGTAVLRQW---------------LPEDAILVDNDIRDYV--------S------DADQ 107 (299)
T ss_dssp ----TT-EEEEES---TTSB-HHHHHHHHH---------------S-TT-EEEEEESS--B---------------SSSE
T ss_pred EeeccCcEEEEecccccCCcCCchHHHHHh---------------CCCCcEEEecchhhhc--------c------ccCC
Confidence 344668999999998732 333334433 1245677777774421 1 2234
Q ss_pred EEEcccccCCCCCCCeeEEEeccc---ccccc----CH----HHHHHHHHhhccCCcEEEEE
Q 036563 156 WVEGDAEALCFEDSTMDGYTIAFG---IRNVT----HI----EKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 156 ~~~~d~~~~~~~~~~~D~v~~~~~---l~~~~----~~----~~~l~~~~~~L~pgG~l~i~ 206 (288)
.+.+|...+.. +.++|+|++..- ..+.. .. .-+..-++..|+-||.+.+-
T Consensus 108 ~~~~Dc~t~~~-~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiK 168 (299)
T PF06460_consen 108 SIVGDCRTYMP-PDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIK 168 (299)
T ss_dssp EEES-GGGEEE-SS-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEE
T ss_pred ceeccccccCC-CCcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEE
Confidence 56688776643 458999998665 11111 11 22455567888899999863
No 456
>PRK07326 short chain dehydrogenase; Provisional
Probab=53.73 E-value=82 Score=26.11 Aligned_cols=76 Identities=14% Similarity=0.188 Sum_probs=47.4
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+.+||=.| |+|.++..+++.+.. .+.++++++.++.......+.+... .++.++.+|+.+
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~---------------~g~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~D~~~ 65 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLA---------------EGYKVAITARDQKELEEAAAELNNK----GNVLGLAADVRD 65 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHH---------------CCCEEEEeeCCHHHHHHHHHHHhcc----CcEEEEEccCCC
Confidence 45788777 477777777776531 2468999998876665554444322 357788888764
Q ss_pred CC-----C-----CCCCeeEEEeccc
Q 036563 164 LC-----F-----EDSTMDGYTIAFG 179 (288)
Q Consensus 164 ~~-----~-----~~~~~D~v~~~~~ 179 (288)
.. + .-+.+|.++.+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~d~vi~~ag 91 (237)
T PRK07326 66 EADVQRAVDAIVAAFGGLDVLIANAG 91 (237)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 31 0 0135788886543
No 457
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=53.52 E-value=57 Score=28.51 Aligned_cols=49 Identities=31% Similarity=0.426 Sum_probs=41.7
Q ss_pred CCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc
Q 036563 80 NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER 147 (288)
Q Consensus 80 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 147 (288)
...++..|||.=+|+|..+...... +..+.++|+++...+.+.+++...
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa~~~-------------------~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAAKNL-------------------GRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHHHHc-------------------CCceEEEecCHHHHHHHHHHHHhh
Confidence 4456889999999999999887776 378999999999999999987654
No 458
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=53.35 E-value=1.4e+02 Score=26.41 Aligned_cols=98 Identities=23% Similarity=0.268 Sum_probs=52.2
Q ss_pred CCCCeEEEecCC-ccHHHHHHHHhhhhhhhhhhhcccccccCCCce-EEEEeCChhHHHHHHHHhhhcCCCCCceEEEEc
Q 036563 82 FPGMKHLDVAGG-TGDVAFRILDTVNSIKRRALQDVLEDDLQEETR-IYVCDINPNMLNVGKKRALERGYPDKSLLWVEG 159 (288)
Q Consensus 82 ~~~~~vLDiG~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~ 159 (288)
.++.+||-.|+| .|..+..+++.. +.+ +++++.++...+.+++. +.. .-+.....
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~------------------G~~~v~~~~~~~~~~~~~~~~----g~~-~~v~~~~~ 216 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKAS------------------GAYPVIVSDPNEYRLELAKKM----GAT-YVVNPFKE 216 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc------------------CCcEEEEECCCHHHHHHHHHh----CCc-EEEccccc
Confidence 456677666664 255555555554 354 88887777655544432 111 00111111
Q ss_pred cccc-C-C-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 160 DAEA-L-C-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 160 d~~~-~-~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
+... + . .....+|+++-... ....+..+.+.|+++|.++....
T Consensus 217 ~~~~~l~~~~~~~~~d~vld~~g------~~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 217 DVVKEVADLTDGEGVDVFLEMSG------APKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred CHHHHHHHhcCCCCCCEEEECCC------CHHHHHHHHHhhcCCCEEEEEcc
Confidence 1100 0 0 12345888874311 13457788999999999987543
No 459
>PLN02494 adenosylhomocysteinase
Probab=53.17 E-value=46 Score=31.75 Aligned_cols=90 Identities=16% Similarity=0.193 Sum_probs=53.3
Q ss_pred CCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcc
Q 036563 82 FPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGD 160 (288)
Q Consensus 82 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d 160 (288)
..+.+|+=+|+|. |......+..+ +.+|+++|.++.....+... + ..+. +
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~------------------Ga~VIV~e~dp~r~~eA~~~----G-----~~vv--~ 302 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAA------------------GARVIVTEIDPICALQALME----G-----YQVL--T 302 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC------------------CCEEEEEeCCchhhHHHHhc----C-----Ceec--c
Confidence 3578899999986 55555555554 47899999988644333221 1 1211 2
Q ss_pred cccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 161 AEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 161 ~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
..+. . ...|+++.... ...-+..+..+.||+||.++.+..
T Consensus 303 leEa-l--~~ADVVI~tTG-----t~~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 303 LEDV-V--SEADIFVTTTG-----NKDIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred HHHH-H--hhCCEEEECCC-----CccchHHHHHhcCCCCCEEEEcCC
Confidence 2221 1 24798886322 112223667888999999987543
No 460
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=53.11 E-value=50 Score=30.40 Aligned_cols=107 Identities=20% Similarity=0.088 Sum_probs=58.9
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+.+.||.+|+.+.....+.+.+. ..+--|+++..+.+..+..........+....+..+|+..
T Consensus 181 ~v~~ld~~~~~~~~~~~y~Ei~r-----------------v~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~ 243 (364)
T KOG1269|consen 181 GVRFLEVVCHAPDLEKVYAEIYR-----------------VLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALP 243 (364)
T ss_pred cEEEEeecccCCcHHHHHHHHhc-----------------ccCCCceEEeHHHHHhhhccCCCcccccccCceecccccc
Confidence 45899999999999988888874 2333445555555544433322211001233344443322
Q ss_pred CC-----------------------------CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccC
Q 036563 164 LC-----------------------------FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 164 ~~-----------------------------~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
.+ ++...+|. ..+..|+++...+.......++++|.+++.+..+
T Consensus 244 ~~~~~~d~~~~~~~~~~~~~~~~~dl~~~~s~~w~~~~~---~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~e~~~ 316 (364)
T KOG1269|consen 244 AETFNTDVFDLLKSFGFEHLKLEKDLALKSSFPWNTPLT---RDTITHWQDKSALFRGRVATLKPGGKVLILEYIR 316 (364)
T ss_pred ceeccccHHHHHhhccchhhhhcccccCCCccccccccc---hhheeecccccHHHHhHhhccCcCceEEehhhcC
Confidence 11 11122222 2334455555667777888888888888765544
No 461
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=52.89 E-value=1.6e+02 Score=26.18 Aligned_cols=100 Identities=20% Similarity=0.224 Sum_probs=55.7
Q ss_pred cCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 79 LNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 79 l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
....++.+||=.|+|. |..+..+++.. +.++++++.+++..+.+++ . +.. .-+...
T Consensus 161 ~~~~~~~~vlV~g~g~vg~~~~~~a~~~------------------G~~vi~~~~~~~~~~~~~~-~---g~~-~~i~~~ 217 (345)
T cd08260 161 ARVKPGEWVAVHGCGGVGLSAVMIASAL------------------GARVIAVDIDDDKLELARE-L---GAV-ATVNAS 217 (345)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc------------------CCeEEEEeCCHHHHHHHHH-h---CCC-EEEccc
Confidence 3445677888888643 55555556654 3788899888877766643 2 211 001111
Q ss_pred E-ccccc-C-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 158 E-GDAEA-L-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 158 ~-~d~~~-~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
. .+... + ....+.+|+++.... ....+....+.|+++|.++...
T Consensus 218 ~~~~~~~~~~~~~~~~~d~vi~~~g------~~~~~~~~~~~l~~~g~~i~~g 264 (345)
T cd08260 218 EVEDVAAAVRDLTGGGAHVSVDALG------IPETCRNSVASLRKRGRHVQVG 264 (345)
T ss_pred cchhHHHHHHHHhCCCCCEEEEcCC------CHHHHHHHHHHhhcCCEEEEeC
Confidence 1 11110 0 111226888874321 1345777889999999988643
No 462
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=52.72 E-value=12 Score=33.64 Aligned_cols=40 Identities=23% Similarity=0.505 Sum_probs=31.8
Q ss_pred CHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhh
Q 036563 185 HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYS 224 (288)
Q Consensus 185 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~ 224 (288)
....+|..+..+|+|||+++++.++..+...++..+..+.
T Consensus 219 ~L~~~L~~a~~~L~~gGrl~VISFHSLEDRiVK~~f~~~~ 258 (310)
T PF01795_consen 219 ELERGLEAAPDLLKPGGRLVVISFHSLEDRIVKQFFRELA 258 (310)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEecchhhHHHHHHHHHhc
Confidence 3577899999999999999999987776666666666543
No 463
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=52.26 E-value=1.5e+02 Score=26.00 Aligned_cols=35 Identities=11% Similarity=0.165 Sum_probs=23.9
Q ss_pred CCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 169 STMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 169 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
..+|+|++.--- .....+++.+...+.++..++..
T Consensus 67 ~~~d~vilavk~---~~~~~~~~~l~~~~~~~~~ii~~ 101 (305)
T PRK12921 67 GPFDLVILAVKA---YQLDAAIPDLKPLVGEDTVIIPL 101 (305)
T ss_pred CCCCEEEEEecc---cCHHHHHHHHHhhcCCCCEEEEe
Confidence 468988764432 24577888888888887766654
No 464
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=52.06 E-value=1.1e+02 Score=25.80 Aligned_cols=78 Identities=15% Similarity=0.252 Sum_probs=50.3
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.++|=.| |+|.++..+++.+.. .+.+++.++.++..++...+.+...+ .++.++.+|+.
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~---------------~G~~V~~~~r~~~~~~~~~~~i~~~~---~~~~~~~~Dl~ 71 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGE---------------AGARVVLSARKAEELEEAAAHLEALG---IDALWIAADVA 71 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHH---------------cCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEccCC
Confidence 356788777 566777777776531 34688999988776666655544332 35778888887
Q ss_pred cCC-C---------CCCCeeEEEeccc
Q 036563 163 ALC-F---------EDSTMDGYTIAFG 179 (288)
Q Consensus 163 ~~~-~---------~~~~~D~v~~~~~ 179 (288)
+.. . ..+..|.++.+..
T Consensus 72 d~~~i~~~~~~~~~~~~~id~vi~~ag 98 (259)
T PRK08213 72 DEADIERLAEETLERFGHVDILVNNAG 98 (259)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 632 0 0135798887654
No 465
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=51.72 E-value=1.6e+02 Score=26.89 Aligned_cols=100 Identities=13% Similarity=0.093 Sum_probs=54.9
Q ss_pred CCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCc-eEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 80 NPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEET-RIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 80 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
..+++.+||=.|+|. |..+..+++.. +. .+++++.++...+.+++. +.+ .-+...
T Consensus 200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~------------------G~~~vi~~~~~~~~~~~~~~~----g~~-~~v~~~ 256 (384)
T cd08265 200 GFRPGAYVVVYGAGPIGLAAIALAKAA------------------GASKVIAFEISEERRNLAKEM----GAD-YVFNPT 256 (384)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc------------------CCCEEEEEcCCHHHHHHHHHc----CCC-EEEccc
Confidence 455677777777653 44555555554 35 789998877755544432 211 001111
Q ss_pred Ec---cc-ccC-C-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 158 EG---DA-EAL-C-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 158 ~~---d~-~~~-~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
.. +. ..+ . .....+|+|+-.. .+....+....+.|+++|.++...
T Consensus 257 ~~~~~~~~~~v~~~~~g~gvDvvld~~-----g~~~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 257 KMRDCLSGEKVMEVTKGWGADIQVEAA-----GAPPATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred ccccccHHHHHHHhcCCCCCCEEEECC-----CCcHHHHHHHHHHHHcCCEEEEEC
Confidence 00 11 000 1 1234589887431 223456778889999999998753
No 466
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=51.71 E-value=21 Score=29.56 Aligned_cols=21 Identities=48% Similarity=0.801 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhccCCcEEEEE
Q 036563 186 IEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 186 ~~~~l~~~~~~L~pgG~l~i~ 206 (288)
....+.++.|+|+|||.+++.
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~ 55 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIF 55 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHhhcCCCeeEEEE
Confidence 366899999999999998863
No 467
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=51.18 E-value=71 Score=21.23 Aligned_cols=30 Identities=27% Similarity=0.381 Sum_probs=24.2
Q ss_pred ChHHHHHHHHHcCCcEEEEEEeeCCeeEEEE
Q 036563 254 PQEKFAAMISDAGFQKVEYENLVGGVVAIHS 284 (288)
Q Consensus 254 ~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~ 284 (288)
+..++..++++.|+++++... .++.+.+++
T Consensus 39 ~~~di~~~~~~~g~~~~~~~~-~~~~~~i~I 68 (70)
T PF01206_consen 39 AVEDIPRWCEENGYEVVEVEE-EGGEYRILI 68 (70)
T ss_dssp HHHHHHHHHHHHTEEEEEEEE-SSSSEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEEE-eCCEEEEEE
Confidence 457888999999999999877 667776665
No 468
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=50.79 E-value=1.1e+02 Score=25.82 Aligned_cols=79 Identities=13% Similarity=0.157 Sum_probs=50.2
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
.+++||=.|+ +|.++..+++.+.. .+.+|+.++.++..++.....+...+ .++.++.+|+.
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~---------------~G~~V~~~~r~~~~~~~~~~~i~~~~---~~~~~~~~D~~ 69 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQ---------------AGAEVILNGRDPAKLAAAAESLKGQG---LSAHALAFDVT 69 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHH---------------cCCEEEEEeCCHHHHHHHHHHHHhcC---ceEEEEEccCC
Confidence 3567887774 67777777776531 35789999988876665555554432 35777888876
Q ss_pred cCC-----C-----CCCCeeEEEecccc
Q 036563 163 ALC-----F-----EDSTMDGYTIAFGI 180 (288)
Q Consensus 163 ~~~-----~-----~~~~~D~v~~~~~l 180 (288)
+.. + .-+..|.++.+...
T Consensus 70 ~~~~~~~~~~~~~~~~~~~d~li~~ag~ 97 (255)
T PRK07523 70 DHDAVRAAIDAFEAEIGPIDILVNNAGM 97 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 531 0 11357888876654
No 469
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=50.65 E-value=1.7e+02 Score=25.48 Aligned_cols=78 Identities=15% Similarity=0.072 Sum_probs=41.3
Q ss_pred CceEEEEeCChhHHHHHHHHhhhcCCC--CCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCc
Q 036563 124 ETRIYVCDINPNMLNVGKKRALERGYP--DKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGG 201 (288)
Q Consensus 124 ~~~v~~~D~s~~~~~~a~~~~~~~~~~--~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG 201 (288)
+.+|+.++.+++.++..++. ++. .........-..+.. ....+|+|++.--- .+...+++.+...+.++.
T Consensus 23 g~~V~~~~r~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~-~~~~~d~vila~k~---~~~~~~~~~l~~~l~~~~ 94 (304)
T PRK06522 23 GHDVTLVARRGAHLDALNEN----GLRLEDGEITVPVLAADDPA-ELGPQDLVILAVKA---YQLPAALPSLAPLLGPDT 94 (304)
T ss_pred CCeEEEEECChHHHHHHHHc----CCcccCCceeecccCCCChh-HcCCCCEEEEeccc---ccHHHHHHHHhhhcCCCC
Confidence 36899999877665544332 211 011100000001111 11468988865442 245778888888888877
Q ss_pred EEEEEecc
Q 036563 202 RFLCLELS 209 (288)
Q Consensus 202 ~l~i~~~~ 209 (288)
.++.....
T Consensus 95 ~iv~~~nG 102 (304)
T PRK06522 95 PVLFLQNG 102 (304)
T ss_pred EEEEecCC
Confidence 77654443
No 470
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=50.43 E-value=1.8e+02 Score=29.46 Aligned_cols=117 Identities=14% Similarity=0.034 Sum_probs=66.4
Q ss_pred HHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHH--HhhhcCCCCC
Q 036563 75 LVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKK--RALERGYPDK 152 (288)
Q Consensus 75 ~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~--~~~~~~~~~~ 152 (288)
+...+...+...||....+++..+--+..... ..+-...++-..+.....++ .+... .
T Consensus 484 ~~~dit~~~~d~ivnaan~~ll~~~g~~~ai~----------------~~~g~~~~~~~~~~~~~~~~~~~l~~~----~ 543 (725)
T PRK13341 484 LWSDITWQRHDRVLNLANRSLLWALGPLRAVP----------------EGGVTVLCSSQEDSDRLVAQLELLDPL----E 543 (725)
T ss_pred HhccccccccceeEEccCccchhhhhHHHhcc----------------CCCeEEecCCHHHHHHHHHHHhhcchh----h
Confidence 33444456667899999998887766666652 12222333323332221111 11111 2
Q ss_pred ceEEEEcccccCC--CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCC
Q 036563 153 SLLWVEGDAEALC--FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHV 211 (288)
Q Consensus 153 ~v~~~~~d~~~~~--~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 211 (288)
+...+.+...+.. .++-+||.|+.............+.+.+...|.++|.|.+....+.
T Consensus 544 rp~~~~~~~~~~~~l~~~~~f~~~~g~~~~g~a~~T~~~~~~l~~~~~~~g~L~~~~vIh~ 604 (725)
T PRK13341 544 RPVLLDGSLEALKTLPANLQFEWIGGRLPTGDAVVTKELWQQLTEKLTPAGKLKLLYSIPA 604 (725)
T ss_pred CccccccchhhhhhcCcccceeeeeccCcccchhhHHHHHHHHHHhcCCCCeeEEEEeccc
Confidence 3334444443332 4566799999655555444455578999999999999976544443
No 471
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=49.87 E-value=1.8e+02 Score=25.44 Aligned_cols=95 Identities=12% Similarity=0.103 Sum_probs=70.4
Q ss_pred EEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC---
Q 036563 88 LDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL--- 164 (288)
Q Consensus 88 LDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~--- 164 (288)
|..=||+-.++..++.. ..++..++..|.-....+..+... .++++..+|....
T Consensus 93 l~~YpGSP~lA~~llR~-------------------qDRl~l~ELHp~D~~~L~~~f~~d----~~vrv~~~DG~~~l~a 149 (279)
T COG2961 93 LRYYPGSPLLARQLLRE-------------------QDRLVLTELHPSDAPLLRNNFAGD----RRVRVLRGDGFLALKA 149 (279)
T ss_pred cccCCCCHHHHHHHcch-------------------hceeeeeecCccHHHHHHHHhCCC----cceEEEecCcHHHHhh
Confidence 77788998888877775 378999999999888888877643 6899999986432
Q ss_pred -CCCCCCeeEEEeccccccccCHHHHHHHHHhhcc--CCcEEEE
Q 036563 165 -CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLK--RGGRFLC 205 (288)
Q Consensus 165 -~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~--pgG~l~i 205 (288)
-.+.+.--+|++...++--.+...+++.+.+.++ ++|...+
T Consensus 150 ~LPP~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yai 193 (279)
T COG2961 150 HLPPKERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAI 193 (279)
T ss_pred hCCCCCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEE
Confidence 1234457889988888877777777777777666 4565544
No 472
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=49.58 E-value=78 Score=27.66 Aligned_cols=65 Identities=12% Similarity=0.009 Sum_probs=37.1
Q ss_pred CceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEE
Q 036563 124 ETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRF 203 (288)
Q Consensus 124 ~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l 203 (288)
+.+|+++|.++..++.+.+. + .+.....+.+ .-...|+|+...... ...+.++++...++++..+
T Consensus 23 g~~V~~~d~~~~~~~~a~~~----g----~~~~~~~~~~----~~~~aDlVilavp~~---~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 23 GHTVYGVSRRESTCERAIER----G----LVDEASTDLS----LLKDCDLVILALPIG---LLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred CCEEEEEECCHHHHHHHHHC----C----CcccccCCHh----HhcCCCEEEEcCCHH---HHHHHHHHHHHhCCCCcEE
Confidence 36899999998877766542 1 1111111111 113579888765432 2345677788878776433
No 473
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=49.55 E-value=1.2e+02 Score=26.89 Aligned_cols=66 Identities=17% Similarity=0.038 Sum_probs=37.3
Q ss_pred ceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEE
Q 036563 125 TRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 125 ~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~ 204 (288)
.+++++|.+++..+.+++ .+.. .. ...+.... -...|+|+..-.... ...+++.+...++++..++
T Consensus 32 ~~V~~~dr~~~~~~~a~~----~g~~---~~-~~~~~~~~---~~~aDvViiavp~~~---~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 32 GEIVGADRSAETRARARE----LGLG---DR-VTTSAAEA---VKGADLVILCVPVGA---SGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred cEEEEEECCHHHHHHHHh----CCCC---ce-ecCCHHHH---hcCCCEEEECCCHHH---HHHHHHHHHhhCCCCCEEE
Confidence 479999999887665543 2211 11 11121111 134798886554322 3456777777888887554
No 474
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=49.52 E-value=60 Score=31.93 Aligned_cols=61 Identities=16% Similarity=0.081 Sum_probs=39.3
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.+..+|| +.||+|.-+..+.+. ..++.+++.+++ ++..++++
T Consensus 504 ~k~mKIL-vaCGsGiGTStmva~----------------------------------kIkk~Lke~GI~---veV~~~~V 545 (602)
T PRK09548 504 GKPVRIL-AVCGQGQGSSMMMKM----------------------------------KIKKYLDKRGIP---IIMDSCAV 545 (602)
T ss_pred CcccEEE-EECCCCchHHHHHHH----------------------------------HHHHHHHHcCCC---eEEEEech
Confidence 3456777 568988877655554 234455566653 56777887
Q ss_pred ccCCCCCCCeeEEEecccc
Q 036563 162 EALCFEDSTMDGYTIAFGI 180 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l 180 (288)
.+.+-..+.+|+|++...+
T Consensus 546 sev~s~~~~aDIIVtt~~L 564 (602)
T PRK09548 546 NDYKGKLETIDIIVCSKHL 564 (602)
T ss_pred HhCcccCCCCCEEEEcccc
Confidence 7765444568999876543
No 475
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=49.41 E-value=49 Score=28.63 Aligned_cols=33 Identities=24% Similarity=0.204 Sum_probs=24.3
Q ss_pred CCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCC
Q 036563 84 GMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDIN 133 (288)
Q Consensus 84 ~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s 133 (288)
..+|+-+|+|. |.++...+.+.+ -.+++.+|.+
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsG-----------------ig~itlID~D 63 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSG-----------------IGRITLIDMD 63 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcC-----------------CCeEEEEecc
Confidence 46899999875 888888777763 3677777753
No 476
>PRK05854 short chain dehydrogenase; Provisional
Probab=49.16 E-value=1.6e+02 Score=26.02 Aligned_cols=81 Identities=11% Similarity=0.081 Sum_probs=48.5
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
.+.++|=.|++ +.++..+++.+.. .+.+|+.+..+.+..+.+.+.+.... +..++.++.+|+.
T Consensus 13 ~gk~~lITGas-~GIG~~~a~~La~---------------~G~~Vil~~R~~~~~~~~~~~l~~~~-~~~~v~~~~~Dl~ 75 (313)
T PRK05854 13 SGKRAVVTGAS-DGLGLGLARRLAA---------------AGAEVILPVRNRAKGEAAVAAIRTAV-PDAKLSLRALDLS 75 (313)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHH---------------CCCEEEEEeCCHHHHHHHHHHHHHhC-CCCceEEEEecCC
Confidence 35567766665 4555555555421 35788888888776665555443321 1135788888886
Q ss_pred cCC----------CCCCCeeEEEecccc
Q 036563 163 ALC----------FEDSTMDGYTIAFGI 180 (288)
Q Consensus 163 ~~~----------~~~~~~D~v~~~~~l 180 (288)
+.. ...+..|+++.+...
T Consensus 76 d~~sv~~~~~~~~~~~~~iD~li~nAG~ 103 (313)
T PRK05854 76 SLASVAALGEQLRAEGRPIHLLINNAGV 103 (313)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEECCcc
Confidence 642 112468998876653
No 477
>PRK06949 short chain dehydrogenase; Provisional
Probab=48.91 E-value=1.2e+02 Score=25.41 Aligned_cols=78 Identities=14% Similarity=0.103 Sum_probs=48.7
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
.+.+||=.| |+|.++..+++.+.. .+.++++++.+++.++.....+...+ .++.++.+|+.
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~---------------~G~~Vi~~~r~~~~~~~~~~~l~~~~---~~~~~~~~D~~ 68 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQ---------------AGAKVVLASRRVERLKELRAEIEAEG---GAAHVVSLDVT 68 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHH---------------CCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEecCC
Confidence 356777777 566666666666531 34689999988877666655443332 35778888876
Q ss_pred cCC----------CCCCCeeEEEeccc
Q 036563 163 ALC----------FEDSTMDGYTIAFG 179 (288)
Q Consensus 163 ~~~----------~~~~~~D~v~~~~~ 179 (288)
+.. ...+..|+++.+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~d~li~~ag 95 (258)
T PRK06949 69 DYQSIKAAVAHAETEAGTIDILVNNSG 95 (258)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 431 01135788887665
No 478
>PRK07814 short chain dehydrogenase; Provisional
Probab=48.05 E-value=1.3e+02 Score=25.60 Aligned_cols=78 Identities=9% Similarity=-0.000 Sum_probs=48.9
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
+++++|=.|+ +|.++..+++.+.. .+.++++++.+++.++...+.....+ .++.++..|+.
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~---------------~G~~Vi~~~r~~~~~~~~~~~l~~~~---~~~~~~~~D~~ 69 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAE---------------AGADVLIAARTESQLDEVAEQIRAAG---RRAHVVAADLA 69 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHH---------------CCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEccCC
Confidence 3567777775 66677666666521 35789999988876665555443322 35778888876
Q ss_pred cCCC----------CCCCeeEEEeccc
Q 036563 163 ALCF----------EDSTMDGYTIAFG 179 (288)
Q Consensus 163 ~~~~----------~~~~~D~v~~~~~ 179 (288)
+... .-+.+|+++.+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~id~vi~~Ag 96 (263)
T PRK07814 70 HPEATAGLAGQAVEAFGRLDIVVNNVG 96 (263)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 5420 0135888886544
No 479
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=47.88 E-value=1.8e+02 Score=24.95 Aligned_cols=78 Identities=15% Similarity=0.135 Sum_probs=43.2
Q ss_pred CCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 84 GMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 84 ~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
+.++|=.|++. +.++..+++.+.. .+++++.++.+....+.+++..... +.+.++.+|+.
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~---------------~G~~vil~~r~~~~~~~~~~~~~~~----~~~~~~~~Dl~ 66 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHR---------------EGAELAFTYQNDKLKGRVEEFAAQL----GSDIVLPCDVA 66 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHH---------------CCCEEEEEecchhHHHHHHHHHhcc----CCceEeecCCC
Confidence 56788888875 3666666665531 3467887776632222232222111 23556778876
Q ss_pred cCC----------CCCCCeeEEEecccc
Q 036563 163 ALC----------FEDSTMDGYTIAFGI 180 (288)
Q Consensus 163 ~~~----------~~~~~~D~v~~~~~l 180 (288)
+.. ..-+.+|+++.+..+
T Consensus 67 ~~~~v~~~~~~~~~~~g~iD~linnAg~ 94 (262)
T PRK07984 67 EDASIDAMFAELGKVWPKFDGFVHSIGF 94 (262)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEECCcc
Confidence 531 112468998877653
No 480
>PRK05855 short chain dehydrogenase; Validated
Probab=47.42 E-value=2e+02 Score=27.44 Aligned_cols=79 Identities=13% Similarity=0.010 Sum_probs=50.3
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
.+.++|=+|+ +|.++..+++.+.. .+.+++.++.+...++...+.+...+ .++.++.+|+.
T Consensus 314 ~~~~~lv~G~-s~giG~~~a~~l~~---------------~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dv~ 374 (582)
T PRK05855 314 SGKLVVVTGA-GSGIGRETALAFAR---------------EGAEVVASDIDEAAAERTAELIRAAG---AVAHAYRVDVS 374 (582)
T ss_pred CCCEEEEECC-cCHHHHHHHHHHHH---------------CCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEcCCC
Confidence 3456776665 66666666666531 34789999988877666555554433 36788888887
Q ss_pred cCC----------CCCCCeeEEEecccc
Q 036563 163 ALC----------FEDSTMDGYTIAFGI 180 (288)
Q Consensus 163 ~~~----------~~~~~~D~v~~~~~l 180 (288)
+.. ...+..|+++.+..+
T Consensus 375 ~~~~~~~~~~~~~~~~g~id~lv~~Ag~ 402 (582)
T PRK05855 375 DADAMEAFAEWVRAEHGVPDIVVNNAGI 402 (582)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEECCcc
Confidence 642 012358998877654
No 481
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=46.31 E-value=2.1e+02 Score=25.36 Aligned_cols=98 Identities=19% Similarity=0.249 Sum_probs=53.6
Q ss_pred CCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCc-eEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEc
Q 036563 82 FPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEET-RIYVCDINPNMLNVGKKRALERGYPDKSLLWVEG 159 (288)
Q Consensus 82 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~ 159 (288)
.++.+||-.|+|. |..+..+++..+ . .+++++.++...+.+++. +.. .-+.....
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G------------------~~~v~~~~~~~~~~~~~~~l----g~~-~~~~~~~~ 218 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVG------------------ARHVVITDVNEYRLELARKM----GAT-RAVNVAKE 218 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcC------------------CCEEEEEcCCHHHHHHHHHh----CCc-EEecCccc
Confidence 3566777777654 556666666642 4 678888777666554432 211 00001111
Q ss_pred cccc-C-C-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 160 DAEA-L-C-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 160 d~~~-~-~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
+... + . .....+|+++-... ....+..+.+.|+++|.++....
T Consensus 219 ~~~~~~~~~~~~~~~d~v~d~~g------~~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 219 DLRDVMAELGMTEGFDVGLEMSG------APSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred cHHHHHHHhcCCCCCCEEEECCC------CHHHHHHHHHHHhcCCEEEEEec
Confidence 1100 0 1 12345888874221 13467778899999999987654
No 482
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=45.85 E-value=64 Score=23.33 Aligned_cols=41 Identities=12% Similarity=-0.002 Sum_probs=21.8
Q ss_pred eEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCC
Q 036563 154 LLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRG 200 (288)
Q Consensus 154 v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg 200 (288)
+++...+..+.......+|+|++..-+ ...+.++.+.+.+-
T Consensus 34 ~~v~a~~~~~~~~~~~~~Dvill~pqi------~~~~~~i~~~~~~~ 74 (95)
T TIGR00853 34 VKIAAGSYGAAGEKLDDADVVLLAPQV------AYMLPDLKKETDKK 74 (95)
T ss_pred EEEEEecHHHHHhhcCCCCEEEECchH------HHHHHHHHHHhhhc
Confidence 455555544442222458999875433 33455566655543
No 483
>PRK07063 short chain dehydrogenase; Provisional
Probab=45.61 E-value=1.6e+02 Score=24.90 Aligned_cols=80 Identities=14% Similarity=0.120 Sum_probs=49.3
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
++++|=.|++ |.++..+++.+.. .+.+++.++.+++.++...+.+...+.. .++.++.+|+.+
T Consensus 7 ~k~vlVtGas-~gIG~~~a~~l~~---------------~G~~vv~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 69 (260)
T PRK07063 7 GKVALVTGAA-QGIGAAIARAFAR---------------EGAAVALADLDAALAERAAAAIARDVAG-ARVLAVPADVTD 69 (260)
T ss_pred CCEEEEECCC-chHHHHHHHHHHH---------------CCCEEEEEeCCHHHHHHHHHHHHhccCC-ceEEEEEccCCC
Confidence 5678877765 4555555555421 3578999998887776666555432111 467788888765
Q ss_pred CC-----C-----CCCCeeEEEecccc
Q 036563 164 LC-----F-----EDSTMDGYTIAFGI 180 (288)
Q Consensus 164 ~~-----~-----~~~~~D~v~~~~~l 180 (288)
.. + .-+..|.++.+...
T Consensus 70 ~~~~~~~~~~~~~~~g~id~li~~ag~ 96 (260)
T PRK07063 70 AASVAAAVAAAEEAFGPLDVLVNNAGI 96 (260)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEECCCc
Confidence 31 0 11368888876543
No 484
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=45.58 E-value=1.6e+02 Score=24.46 Aligned_cols=78 Identities=13% Similarity=0.088 Sum_probs=48.6
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+.++|=.|+ +|.++..+++.+.. .+.+|..++.++...+.........+ .++.++.+|+.+
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~---------------~G~~Vi~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~ 67 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAK---------------EGVNVGLLARTEENLKAVAEEVEAYG---VKVVIATADVSD 67 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHH---------------CCCEEEEEeCCHHHHHHHHHHHHHhC---CeEEEEECCCCC
Confidence 456777774 77777777776521 35789999988766555444443322 467888888765
Q ss_pred CC-----C-----CCCCeeEEEecccc
Q 036563 164 LC-----F-----EDSTMDGYTIAFGI 180 (288)
Q Consensus 164 ~~-----~-----~~~~~D~v~~~~~l 180 (288)
.. + .-+..|.++.+...
T Consensus 68 ~~~~~~~~~~~~~~~~~id~vi~~ag~ 94 (239)
T PRK07666 68 YEEVTAAIEQLKNELGSIDILINNAGI 94 (239)
T ss_pred HHHHHHHHHHHHHHcCCccEEEEcCcc
Confidence 31 0 01358988876543
No 485
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=45.58 E-value=51 Score=31.50 Aligned_cols=87 Identities=21% Similarity=0.210 Sum_probs=50.6
Q ss_pred CCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcc
Q 036563 82 FPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGD 160 (288)
Q Consensus 82 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d 160 (288)
-.+.+|+=+|+|. |......+..+ +.+|+++|.++.....+.. .+ +.+. +
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~------------------Ga~ViV~e~dp~~a~~A~~----~G-----~~~~--~ 302 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGF------------------GARVVVTEIDPICALQAAM----EG-----YQVV--T 302 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC------------------CCEEEEEeCCchhHHHHHh----cC-----ceec--c
Confidence 3578899999986 44433334333 4789999888764433222 11 2221 2
Q ss_pred cccCCCCCCCeeEEEeccccccccCHHHHH-HHHHhhccCCcEEEEE
Q 036563 161 AEALCFEDSTMDGYTIAFGIRNVTHIEKAL-AEAYRVLKRGGRFLCL 206 (288)
Q Consensus 161 ~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l-~~~~~~L~pgG~l~i~ 206 (288)
+.+. -...|+|+..-. ...++ .+....||||+.++-+
T Consensus 303 leel---l~~ADIVI~atG------t~~iI~~e~~~~MKpGAiLINv 340 (476)
T PTZ00075 303 LEDV---VETADIFVTATG------NKDIITLEHMRRMKNNAIVGNI 340 (476)
T ss_pred HHHH---HhcCCEEEECCC------cccccCHHHHhccCCCcEEEEc
Confidence 2222 135799886532 22234 3677889999998853
No 486
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=45.40 E-value=57 Score=28.40 Aligned_cols=20 Identities=20% Similarity=0.395 Sum_probs=15.3
Q ss_pred ChHHHHHHHHHcCCcEEEEE
Q 036563 254 PQEKFAAMISDAGFQKVEYE 273 (288)
Q Consensus 254 ~~~~~~~~l~~aGf~~v~~~ 273 (288)
...+++++|.+.|..++.+.
T Consensus 165 eip~FE~mL~~~Gi~l~Kfw 184 (270)
T COG2326 165 EIPEFERMLVESGIILVKFW 184 (270)
T ss_pred HhhHHHHHHHhCCeEEEEEE
Confidence 44578888999998877764
No 487
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=45.35 E-value=1.9e+02 Score=24.56 Aligned_cols=104 Identities=13% Similarity=0.173 Sum_probs=57.5
Q ss_pred CCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCCh---hHHHHHHHHhhhcCCCCCceEEEEc
Q 036563 84 GMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINP---NMLNVGKKRALERGYPDKSLLWVEG 159 (288)
Q Consensus 84 ~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~---~~~~~a~~~~~~~~~~~~~v~~~~~ 159 (288)
++++|=.|+++ +.++..+++.+.. .+.+++.++.+. +.++...+... + .++.++..
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~---------------~G~~v~~~~r~~~~~~~~~~~~~~~~--~---~~~~~~~~ 66 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHN---------------AGAKLVFTYAGERLEKEVRELADTLE--G---QESLLLPC 66 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHH---------------CCCEEEEecCcccchHHHHHHHHHcC--C---CceEEEec
Confidence 56788888873 6677777776532 346787776432 22332222211 1 35777888
Q ss_pred ccccCC----------CCCCCeeEEEecccccc-------cc--CHH--------------HHHHHHHhhccCCcEEEEE
Q 036563 160 DAEALC----------FEDSTMDGYTIAFGIRN-------VT--HIE--------------KALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 160 d~~~~~----------~~~~~~D~v~~~~~l~~-------~~--~~~--------------~~l~~~~~~L~pgG~l~i~ 206 (288)
|+.+.. ..-++.|+++.+..+.. +. +.+ .+.+.+.+.++++|.++.+
T Consensus 67 Dv~d~~~v~~~~~~~~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~i 146 (257)
T PRK08594 67 DVTSDEEITACFETIKEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTL 146 (257)
T ss_pred CCCCHHHHHHHHHHHHHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEE
Confidence 876541 11256898876544321 11 111 1234566777788888764
Q ss_pred e
Q 036563 207 E 207 (288)
Q Consensus 207 ~ 207 (288)
.
T Consensus 147 s 147 (257)
T PRK08594 147 T 147 (257)
T ss_pred c
Confidence 3
No 488
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=45.22 E-value=2.2e+02 Score=25.20 Aligned_cols=100 Identities=22% Similarity=0.255 Sum_probs=53.2
Q ss_pred CCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEE
Q 036563 80 NPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVE 158 (288)
Q Consensus 80 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~ 158 (288)
...++.+||=.|+|. |..+..+++..+ ..++++++.++.....+++. +.. .-+....
T Consensus 163 ~~~~g~~vlI~g~g~~g~~~~~~a~~~G-----------------~~~v~~~~~~~~~~~~~~~~----g~~-~~v~~~~ 220 (345)
T cd08286 163 KVKPGDTVAIVGAGPVGLAALLTAQLYS-----------------PSKIIMVDLDDNRLEVAKKL----GAT-HTVNSAK 220 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-----------------CCeEEEEcCCHHHHHHHHHh----CCC-ceecccc
Confidence 345566766677642 444444555531 15788888877665555432 211 1111111
Q ss_pred ccccc-C-C-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 159 GDAEA-L-C-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 159 ~d~~~-~-~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
.+... + . .....+|+++-.. . ....+..+.+.|+++|.++...
T Consensus 221 ~~~~~~i~~~~~~~~~d~vld~~-----g-~~~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 221 GDAIEQVLELTDGRGVDVVIEAV-----G-IPATFELCQELVAPGGHIANVG 266 (345)
T ss_pred ccHHHHHHHHhCCCCCCEEEECC-----C-CHHHHHHHHHhccCCcEEEEec
Confidence 11100 0 0 1223589887422 1 2335788889999999998653
No 489
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.94 E-value=45 Score=30.62 Aligned_cols=24 Identities=17% Similarity=0.429 Sum_probs=20.7
Q ss_pred CCCeEEEecCCccHHHHHHHHhhh
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVN 106 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~ 106 (288)
++...+|+|||-|.++.++....+
T Consensus 182 ~~~~~vEFGAGrg~Ls~~vs~~l~ 205 (420)
T KOG2811|consen 182 PSSCFVEFGAGRGELSRWVSDCLQ 205 (420)
T ss_pred CcceEEEecCCchHHHHHHHHHhc
Confidence 336899999999999999988874
No 490
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=44.33 E-value=1.6e+02 Score=24.66 Aligned_cols=79 Identities=15% Similarity=0.111 Sum_probs=48.8
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
.++++|=.|+ +|.++..+++.+.. .+.+++.++.+++.++.....+...+ .++.++.+|+.
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~---------------~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~ 70 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAG---------------AGAHVLVNGRNAATLEAAVAALRAAG---GAAEALAFDIA 70 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHH---------------cCCeEEEEeCCHHHHHHHHHHHHhcC---CceEEEEccCC
Confidence 3567887775 55556666665421 35789999988876665555544332 35778888876
Q ss_pred cCC----------CCCCCeeEEEecccc
Q 036563 163 ALC----------FEDSTMDGYTIAFGI 180 (288)
Q Consensus 163 ~~~----------~~~~~~D~v~~~~~l 180 (288)
+.. ..-+..|.++.+...
T Consensus 71 ~~~~~~~~~~~~~~~~~~id~vi~~ag~ 98 (256)
T PRK06124 71 DEEAVAAAFARIDAEHGRLDILVNNVGA 98 (256)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 531 011357888876553
No 491
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=44.15 E-value=1.4e+02 Score=23.85 Aligned_cols=91 Identities=20% Similarity=0.242 Sum_probs=39.3
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
.+.+|.=.|+|....+..-.-... +..--+.+|.++.-.. + -..+ ..+.++ +.+
T Consensus 67 ~gk~I~~yGA~~kg~tlln~~g~~----------------~~~I~~vvD~np~K~G--~---~~PG---t~ipI~--~p~ 120 (160)
T PF08484_consen 67 EGKRIAGYGAGAKGNTLLNYFGLD----------------NDLIDYVVDDNPLKQG--K---YLPG---THIPIV--SPE 120 (160)
T ss_dssp TT--EEEE---SHHHHHHHHHT------------------TTTS--EEES-GGGTT--E---E-TT---T--EEE--EGG
T ss_pred cCCEEEEECcchHHHHHHHHhCCC----------------cceeEEEEeCChhhcC--c---ccCC---CCCeEC--CHH
Confidence 357899999998655432222211 1233467898774211 0 0000 123333 222
Q ss_pred cCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 163 ALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 163 ~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
.+ .....|.++.... + -.+.+++++...++.||.|++
T Consensus 121 ~l--~~~~pd~vivlaw-~---y~~EI~~~~~~~~~~gg~fi~ 157 (160)
T PF08484_consen 121 EL--KERKPDYVIVLAW-N---YKDEIIEKLREYLERGGKFIV 157 (160)
T ss_dssp G----SS--SEEEES-G-G---GHHHHHHHTHHHHHTT-EEEE
T ss_pred HH--hhCCCCEEEEcCh-h---hHHHHHHHHHHHHhcCCEEEE
Confidence 22 2345687765332 2 246778888888899999985
No 492
>PRK05867 short chain dehydrogenase; Provisional
Probab=44.08 E-value=1.5e+02 Score=24.88 Aligned_cols=79 Identities=15% Similarity=0.084 Sum_probs=48.5
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
.+.++|=.|++. .++..+++.+.. .+.++..++.+++.++.....+...+ .++.++.+|+.
T Consensus 8 ~~k~vlVtGas~-gIG~~ia~~l~~---------------~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~D~~ 68 (253)
T PRK05867 8 HGKRALITGAST-GIGKRVALAYVE---------------AGAQVAIAARHLDALEKLADEIGTSG---GKVVPVCCDVS 68 (253)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHH---------------CCCEEEEEcCCHHHHHHHHHHHHhcC---CeEEEEEccCC
Confidence 356788888754 445555554421 34789999988877766655554433 35777888876
Q ss_pred cCC-----C-----CCCCeeEEEecccc
Q 036563 163 ALC-----F-----EDSTMDGYTIAFGI 180 (288)
Q Consensus 163 ~~~-----~-----~~~~~D~v~~~~~l 180 (288)
+.. + .-+..|+++.+...
T Consensus 69 ~~~~~~~~~~~~~~~~g~id~lv~~ag~ 96 (253)
T PRK05867 69 QHQQVTSMLDQVTAELGGIDIAVCNAGI 96 (253)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 531 0 11468988876553
No 493
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=44.01 E-value=1.8e+02 Score=27.16 Aligned_cols=40 Identities=20% Similarity=0.299 Sum_probs=25.7
Q ss_pred CCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHH
Q 036563 82 FPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLN 138 (288)
Q Consensus 82 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~ 138 (288)
.++.+|+=+|+|. |......+...+ ..+++.++.++....
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G-----------------~~~V~v~~r~~~ra~ 220 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKG-----------------VRKITVANRTLERAE 220 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCC-----------------CCeEEEEeCCHHHHH
Confidence 4567999999865 444444343321 247899999876544
No 494
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=43.70 E-value=1.8e+02 Score=27.01 Aligned_cols=19 Identities=21% Similarity=0.315 Sum_probs=16.1
Q ss_pred ceEEEEeCChhHHHHHHHH
Q 036563 125 TRIYVCDINPNMLNVGKKR 143 (288)
Q Consensus 125 ~~v~~~D~s~~~~~~a~~~ 143 (288)
.+|+++|++++.++...+.
T Consensus 23 ~~VigvD~d~~kv~~l~~g 41 (388)
T PRK15057 23 HEVVALDILPSRVAMLNDR 41 (388)
T ss_pred CcEEEEECCHHHHHHHHcC
Confidence 7899999999988877653
No 495
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=43.06 E-value=2.3e+02 Score=24.85 Aligned_cols=92 Identities=12% Similarity=0.091 Sum_probs=50.2
Q ss_pred CCeEEEe--cCC-ccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcc
Q 036563 84 GMKHLDV--AGG-TGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGD 160 (288)
Q Consensus 84 ~~~vLDi--G~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d 160 (288)
+.++|=+ |+| .|..+..+++.. +.++++++.++...+.+++. +. -.++..+
T Consensus 143 ~~~vlv~~~g~g~vG~~a~q~a~~~------------------G~~vi~~~~~~~~~~~~~~~----g~----~~~i~~~ 196 (324)
T cd08291 143 GAKAVVHTAAASALGRMLVRLCKAD------------------GIKVINIVRRKEQVDLLKKI----GA----EYVLNSS 196 (324)
T ss_pred CCcEEEEccCccHHHHHHHHHHHHc------------------CCEEEEEeCCHHHHHHHHHc----CC----cEEEECC
Confidence 3344443 443 366666666665 37899999888877766542 21 1222211
Q ss_pred cccC-----C-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 161 AEAL-----C-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 161 ~~~~-----~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
-.++ . .....+|+++-... . .......+.|+++|.+++...
T Consensus 197 ~~~~~~~v~~~~~~~~~d~vid~~g-----~--~~~~~~~~~l~~~G~~v~~g~ 243 (324)
T cd08291 197 DPDFLEDLKELIAKLNATIFFDAVG-----G--GLTGQILLAMPYGSTLYVYGY 243 (324)
T ss_pred CccHHHHHHHHhCCCCCcEEEECCC-----c--HHHHHHHHhhCCCCEEEEEEe
Confidence 1111 0 12235888874221 1 123445777899999987643
No 496
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=42.88 E-value=71 Score=28.89 Aligned_cols=104 Identities=16% Similarity=0.134 Sum_probs=60.6
Q ss_pred hcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEE
Q 036563 78 KLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLW 156 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~ 156 (288)
-....++.++.-+|+|. |.....-++..+ ..+++++|++++-.+.+++.-... -+..
T Consensus 187 ~Akv~~GstvAVfGLG~VGLav~~Gaka~G-----------------AsrIIgvDiN~~Kf~~ak~fGaTe-----~iNp 244 (375)
T KOG0022|consen 187 TAKVEPGSTVAVFGLGGVGLAVAMGAKAAG-----------------ASRIIGVDINPDKFEKAKEFGATE-----FINP 244 (375)
T ss_pred hcccCCCCEEEEEecchHHHHHHHhHHhcC-----------------cccEEEEecCHHHHHHHHhcCcce-----ecCh
Confidence 33456777888888876 444444444432 479999999999999887652221 1111
Q ss_pred EEcccccC------CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCC-cEEEEEeccCC
Q 036563 157 VEGDAEAL------CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRG-GRFLCLELSHV 211 (288)
Q Consensus 157 ~~~d~~~~------~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~~~~ 211 (288)
. |.... ...++.+|..+ +.+ .....++++....+.| |.-+++.....
T Consensus 245 ~--d~~~~i~evi~EmTdgGvDysf-----Ec~-G~~~~m~~al~s~h~GwG~sv~iGv~~~ 298 (375)
T KOG0022|consen 245 K--DLKKPIQEVIIEMTDGGVDYSF-----ECI-GNVSTMRAALESCHKGWGKSVVIGVAAA 298 (375)
T ss_pred h--hccccHHHHHHHHhcCCceEEE-----Eec-CCHHHHHHHHHHhhcCCCeEEEEEecCC
Confidence 1 22221 13345566654 111 2355677777777888 88777655443
No 497
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=42.61 E-value=1.8e+02 Score=24.17 Aligned_cols=77 Identities=9% Similarity=0.081 Sum_probs=46.9
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+.++|=.|+ +|.++..+++.+.. .+.+++.++.++..++...+.+...+ .++.++..|+.+
T Consensus 5 ~~~~lItG~-~g~iG~~~a~~l~~---------------~G~~vi~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~ 65 (253)
T PRK08217 5 DKVIVITGG-AQGLGRAMAEYLAQ---------------KGAKLALIDLNQEKLEEAVAECGALG---TEVRGYAANVTD 65 (253)
T ss_pred CCEEEEECC-CchHHHHHHHHHHH---------------CCCEEEEEeCCHHHHHHHHHHHHhcC---CceEEEEcCCCC
Confidence 567887776 45555555555421 34688999988876665555444332 467778888754
Q ss_pred CC----------CCCCCeeEEEeccc
Q 036563 164 LC----------FEDSTMDGYTIAFG 179 (288)
Q Consensus 164 ~~----------~~~~~~D~v~~~~~ 179 (288)
.. ..-+..|.|+.+..
T Consensus 66 ~~~~~~~~~~~~~~~~~id~vi~~ag 91 (253)
T PRK08217 66 EEDVEATFAQIAEDFGQLNGLINNAG 91 (253)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 21 00135798887654
No 498
>PRK06172 short chain dehydrogenase; Provisional
Probab=42.60 E-value=1.8e+02 Score=24.39 Aligned_cols=78 Identities=18% Similarity=0.106 Sum_probs=48.3
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+.++|=.|+ +|.++..+++.+.. .+.+++.++.++..++...+.+...+ .++.++.+|+.+
T Consensus 7 ~k~ilItGa-s~~iG~~ia~~l~~---------------~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~ 67 (253)
T PRK06172 7 GKVALVTGG-AAGIGRATALAFAR---------------EGAKVVVADRDAAGGEETVALIREAG---GEALFVACDVTR 67 (253)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHH---------------cCCEEEEEeCCHHHHHHHHHHHHhcC---CceEEEEcCCCC
Confidence 457777776 45555556555421 34789999988876665555544332 467888888865
Q ss_pred CC-----C-----CCCCeeEEEecccc
Q 036563 164 LC-----F-----EDSTMDGYTIAFGI 180 (288)
Q Consensus 164 ~~-----~-----~~~~~D~v~~~~~l 180 (288)
.. + .-+..|.++.+...
T Consensus 68 ~~~i~~~~~~~~~~~g~id~li~~ag~ 94 (253)
T PRK06172 68 DAEVKALVEQTIAAYGRLDYAFNNAGI 94 (253)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 31 0 01357988876653
No 499
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=42.34 E-value=38 Score=28.91 Aligned_cols=50 Identities=20% Similarity=0.354 Sum_probs=33.2
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHH
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGK 141 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~ 141 (288)
..+.+.++..+..+++|+=||+|.++..+... ..+++.-|+++......+
T Consensus 10 ~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~-------------------~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 10 KWIIELIPKNKHKTYVEPFAGGGSVFLNLKQP-------------------GKRVIINDINPDLINFWK 59 (260)
T ss_dssp HHHHHHS-S-S-SEEEETT-TTSHHHHCC----------------------SSEEEEEES-HHHHHHHH
T ss_pred HHHHHHcCCCCCCEEEEEecchhHHHHHhccc-------------------ccceeeeechHHHHHHHH
Confidence 45666666535679999999999999877663 378999999997666555
No 500
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=41.82 E-value=2.2e+02 Score=24.81 Aligned_cols=76 Identities=14% Similarity=0.059 Sum_probs=41.2
Q ss_pred CceEEEEeCChhHHHHHHHHhhhc--------CCCC--------CceEEEEcccccCCCCCCCeeEEEeccccccccCHH
Q 036563 124 ETRIYVCDINPNMLNVGKKRALER--------GYPD--------KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIE 187 (288)
Q Consensus 124 ~~~v~~~D~s~~~~~~a~~~~~~~--------~~~~--------~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~ 187 (288)
+.+|+.+|.+++.++.+++..... .... .++.+. .|.... -...|+|+..-. ....-..
T Consensus 26 G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~~a---~~~aDlVieavp-e~~~~k~ 100 (287)
T PRK08293 26 GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLAEA---VKDADLVIEAVP-EDPEIKG 100 (287)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHHHH---hcCCCEEEEecc-CCHHHHH
Confidence 478999999999888776553211 1100 122222 232211 134688876433 1111245
Q ss_pred HHHHHHHhhccCCcEEE
Q 036563 188 KALAEAYRVLKRGGRFL 204 (288)
Q Consensus 188 ~~l~~~~~~L~pgG~l~ 204 (288)
.+++++.+.++++..+.
T Consensus 101 ~~~~~l~~~~~~~~ii~ 117 (287)
T PRK08293 101 DFYEELAKVAPEKTIFA 117 (287)
T ss_pred HHHHHHHhhCCCCCEEE
Confidence 67888888887776553
Done!