BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036565
(180 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S6K|A Chain A, Crystal Structure Of Xcnags
Length = 467
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 41 FRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIA 100
R P A V KVF ASN+ + R ++ +EAE RD YG +G +
Sbjct: 121 LRVTSPHALAIVRKVFQASNLKLVEALQQNGARATSITGGVFEAEYLNRD-TYGLVGEVK 179
Query: 101 LLQRKMIE 108
+ IE
Sbjct: 180 AVNLAPIE 187
>pdb|1K99|A Chain A, Solution Structure Of The First Hmg Box In Human
Upstream Binding Factor
Length = 99
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 12/78 (15%)
Query: 25 KLLKRKCIPTCIFAPYFR--SDEPKKFAKVHKVFGASNVSKILT----EVPEEQREDTVN 78
KL K P PYFR ++ K+AK+H +++KIL+ E+PE+++ +
Sbjct: 3 KLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQ 62
Query: 79 SLAYEAE------ARLRD 90
E + AR R+
Sbjct: 63 DFQREKQEFERNLARFRE 80
>pdb|3MBB|A Chain A, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
pdb|3MBB|B Chain B, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
Length = 514
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 89 RDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTPAASSCAVLNDLCVGGSPAFSDL 148
RDP + ++ R I+ +D + ARL R P A A + + SPA+ D
Sbjct: 44 RDPTMDWLASL----RSQIKPYRDRFPSHARLPRAGLPRAEILAEIAAMGAAESPAWRDG 99
Query: 149 AACGDFFDSFSQNSLELNRV 168
A G + + LN V
Sbjct: 100 YASGAVYHGDEHHIAFLNEV 119
>pdb|3MAU|A Chain A, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|B Chain B, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|C Chain C, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|D Chain D, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
Length = 514
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 89 RDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTPAASSCAVLNDLCVGGSPAFSDL 148
RDP + ++ R I+ +D + ARL R P A A + + SPA+ D
Sbjct: 44 RDPTMDWLASL----RSQIKPYRDRFPSHARLPRAGLPRAEILAEIAAMGAAESPAWRDG 99
Query: 149 AACGDFFDSFSQNSLELNRV 168
A G + + LN V
Sbjct: 100 YASGAVYHGDEHHIAFLNEV 119
>pdb|3MAD|A Chain A, Crystal Structure Of Stspl (Symmetric Form)
pdb|3MAD|B Chain B, Crystal Structure Of Stspl (Symmetric Form)
Length = 514
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 89 RDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTPAASSCAVLNDLCVGGSPAFSDL 148
RDP + ++ R I+ +D + ARL R P A A + + SPA+ D
Sbjct: 44 RDPTMDWLASL----RSQIKPYRDRFPSHARLPRAGLPRAEILAEIAAMGAAESPAWRDG 99
Query: 149 AACGDFFDSFSQNSLELNRV 168
A G + + LN V
Sbjct: 100 YASGAVYHGDEHHIAFLNEV 119
>pdb|3MAF|B Chain B, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 89 RDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTPAASSCAVLNDLCVGGSPAFSDL 148
RDP + ++ R I+ +D + ARL R P A A + + SPA+ D
Sbjct: 48 RDPTMDWLASL----RSQIKPYRDRFPSHARLPRAGLPRAEILAEIAAMGAAESPAWRDG 103
Query: 149 AACGDFFDSFSQNSLELNRV 168
A G + + LN V
Sbjct: 104 YASGAVYHGDEHHIAFLNEV 123
>pdb|3MAF|A Chain A, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 89 RDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTPAASSCAVLNDLCVGGSPAFSDL 148
RDP + ++ R I+ +D + ARL R P A A + + SPA+ D
Sbjct: 48 RDPTMDWLASL----RSQIKPYRDRFPSHARLPRAGLPRAEILAEIAAMGAAESPAWRDG 103
Query: 149 AACGDFFDSFSQNSLELNRV 168
A G + + LN V
Sbjct: 104 YASGAVYHGDEHHIAFLNEV 123
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 63 KILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAI------ALLQRKMIELQQDLAVA 116
I +VP +R+ TV SLA EA A++ P++ I L +M+ L ++
Sbjct: 114 NITYQVPSGRRDGTV-SLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIG 172
Query: 117 RARLARYT 124
A + +T
Sbjct: 173 VAHCSSFT 180
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.133 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,988,993
Number of Sequences: 62578
Number of extensions: 170185
Number of successful extensions: 312
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 312
Number of HSP's gapped (non-prelim): 10
length of query: 180
length of database: 14,973,337
effective HSP length: 93
effective length of query: 87
effective length of database: 9,153,583
effective search space: 796361721
effective search space used: 796361721
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)