Query 036565
Match_columns 180
No_of_seqs 143 out of 316
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 03:15:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036565.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036565hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03195 DUF260: Protein of un 100.0 1.1E-50 2.3E-55 308.4 9.6 101 20-120 1-101 (101)
2 COG3416 Uncharacterized protei 85.5 5.6 0.00012 34.9 8.1 68 60-127 11-78 (233)
3 PF09006 Surfac_D-trimer: Lung 78.2 5 0.00011 27.2 4.2 29 99-127 1-29 (46)
4 PF11333 DUF3135: Protein of u 77.8 9 0.00019 28.5 5.8 66 44-113 15-82 (83)
5 PRK10265 chaperone-modulator p 77.6 5.5 0.00012 30.0 4.8 31 95-125 69-99 (101)
6 PF13334 DUF4094: Domain of un 77.2 2.3 5E-05 32.2 2.6 24 96-119 72-95 (95)
7 PF05308 Mito_fiss_reg: Mitoch 76.6 3.1 6.8E-05 36.6 3.6 28 104-131 122-149 (253)
8 PF09849 DUF2076: Uncharacteri 74.6 17 0.00037 32.0 7.7 63 60-122 11-73 (247)
9 PF07106 TBPIP: Tat binding pr 68.5 6.7 0.00014 31.5 3.5 82 46-127 20-109 (169)
10 PF06698 DUF1192: Protein of u 57.8 20 0.00044 25.2 3.9 28 99-126 23-50 (59)
11 PF12097 DUF3573: Protein of u 56.1 13 0.00029 34.7 3.5 23 97-119 42-64 (383)
12 PLN02523 galacturonosyltransfe 51.0 32 0.0007 33.8 5.4 63 63-130 145-209 (559)
13 PF12325 TMF_TATA_bd: TATA ele 48.4 37 0.00081 26.8 4.5 34 93-126 12-45 (120)
14 cd04766 HTH_HspR Helix-Turn-He 47.9 34 0.00074 24.6 4.0 31 91-122 60-90 (91)
15 COG5509 Uncharacterized small 47.5 36 0.00078 24.6 3.9 26 99-124 27-52 (65)
16 cd01111 HTH_MerD Helix-Turn-He 46.3 69 0.0015 24.1 5.6 28 95-122 78-105 (107)
17 PF06305 DUF1049: Protein of u 45.0 51 0.0011 22.2 4.3 24 100-123 44-67 (68)
18 PF14282 FlxA: FlxA-like prote 43.9 38 0.00083 25.7 3.8 27 98-124 52-78 (106)
19 PF10883 DUF2681: Protein of u 43.5 44 0.00096 25.2 4.0 27 99-125 32-58 (87)
20 PF13591 MerR_2: MerR HTH fami 43.5 30 0.00065 25.0 3.1 22 96-117 62-83 (84)
21 PRK00295 hypothetical protein; 42.1 78 0.0017 22.4 5.0 29 96-124 25-53 (68)
22 PF04977 DivIC: Septum formati 41.7 47 0.001 22.6 3.8 25 99-123 26-50 (80)
23 PF04728 LPP: Lipoprotein leuc 40.7 57 0.0012 22.9 4.0 23 99-121 12-34 (56)
24 PF13863 DUF4200: Domain of un 40.3 34 0.00074 25.6 3.1 63 72-147 61-123 (126)
25 PRK04406 hypothetical protein; 39.5 85 0.0018 22.7 4.9 29 96-124 31-59 (75)
26 PRK00451 glycine dehydrogenase 38.7 26 0.00056 31.5 2.6 35 38-73 2-36 (447)
27 PRK00846 hypothetical protein; 38.1 89 0.0019 23.1 4.9 31 94-124 31-61 (77)
28 PRK02793 phi X174 lysis protei 38.0 94 0.002 22.2 4.9 29 96-124 28-56 (72)
29 PRK00736 hypothetical protein; 37.4 1E+02 0.0022 21.8 4.9 29 96-124 25-53 (68)
30 PRK00888 ftsB cell division pr 36.8 59 0.0013 24.8 3.9 20 99-118 29-48 (105)
31 PF08227 DASH_Hsk3: DASH compl 36.6 71 0.0015 21.4 3.8 26 98-123 3-28 (45)
32 TIGR02209 ftsL_broad cell divi 35.0 67 0.0015 22.5 3.8 29 97-125 31-59 (85)
33 PRK02119 hypothetical protein; 34.8 1.1E+02 0.0024 21.9 4.9 29 96-124 29-57 (73)
34 PF04977 DivIC: Septum formati 34.5 1E+02 0.0022 20.9 4.5 30 98-127 18-47 (80)
35 PRK10803 tol-pal system protei 34.4 57 0.0012 28.4 3.9 26 97-122 54-79 (263)
36 PHA02562 46 endonuclease subun 34.0 70 0.0015 29.6 4.7 23 39-61 143-165 (562)
37 PLN02742 Probable galacturonos 33.7 84 0.0018 30.9 5.2 56 71-130 132-187 (534)
38 KOG0242 Kinesin-like protein [ 33.5 68 0.0015 32.0 4.7 64 56-119 283-367 (675)
39 PF04706 Dickkopf_N: Dickkopf 33.0 25 0.00054 24.1 1.2 18 17-34 19-36 (52)
40 PF04012 PspA_IM30: PspA/IM30 32.5 91 0.002 25.7 4.7 43 75-124 8-50 (221)
41 PF08657 DASH_Spc34: DASH comp 32.4 1.3E+02 0.0029 26.5 5.9 73 43-122 132-205 (259)
42 PF11471 Sugarporin_N: Maltopo 32.0 99 0.0021 21.6 4.1 20 102-121 30-49 (60)
43 PF04508 Pox_A_type_inc: Viral 31.9 73 0.0016 18.7 2.9 19 99-117 3-21 (23)
44 PF06696 Strep_SA_rep: Strepto 31.5 1.2E+02 0.0026 18.1 3.8 22 102-123 3-24 (25)
45 PHA02047 phage lambda Rz1-like 31.4 1E+02 0.0023 24.0 4.5 26 102-127 32-57 (101)
46 PF06295 DUF1043: Protein of u 31.3 57 0.0012 25.5 3.1 25 100-124 28-52 (128)
47 PF11336 DUF3138: Protein of u 30.5 75 0.0016 30.9 4.2 30 96-125 24-53 (514)
48 KOG4196 bZIP transcription fac 30.3 82 0.0018 25.8 3.9 54 71-124 53-108 (135)
49 PRK09039 hypothetical protein; 29.3 72 0.0016 28.9 3.8 27 97-123 137-163 (343)
50 PF15483 DUF4641: Domain of un 29.3 59 0.0013 31.2 3.3 31 92-123 414-444 (445)
51 PF11853 DUF3373: Protein of u 28.9 93 0.002 30.2 4.7 32 90-122 18-49 (489)
52 PF13600 DUF4140: N-terminal d 28.9 1E+02 0.0023 22.4 4.0 29 96-124 69-97 (104)
53 PF14282 FlxA: FlxA-like prote 28.6 65 0.0014 24.4 3.0 23 96-118 18-40 (106)
54 KOG4552 Vitamin-D-receptor int 28.0 95 0.0021 27.6 4.2 47 61-115 59-106 (272)
55 PF06295 DUF1043: Protein of u 28.0 1E+02 0.0022 24.1 4.0 26 104-129 25-50 (128)
56 PF15300 INT_SG_DDX_CT_C: INTS 27.4 46 0.00099 23.9 1.8 27 59-85 23-51 (65)
57 PF06818 Fez1: Fez1; InterPro 27.2 89 0.0019 27.0 3.8 29 96-124 9-37 (202)
58 PRK09413 IS2 repressor TnpA; R 27.1 1.1E+02 0.0024 23.2 4.0 29 98-126 79-107 (121)
59 PF14197 Cep57_CLD_2: Centroso 27.0 1.6E+02 0.0034 21.0 4.5 31 94-124 37-67 (69)
60 PF15397 DUF4618: Domain of un 27.0 87 0.0019 27.9 3.8 57 60-124 52-108 (258)
61 PF04728 LPP: Lipoprotein leuc 26.8 1.4E+02 0.003 21.0 4.1 24 98-121 18-41 (56)
62 TIGR03021 pilP_fam type IV pil 24.9 1.2E+02 0.0027 23.7 4.0 27 96-122 4-32 (119)
63 PF04420 CHD5: CHD5-like prote 24.8 1.1E+02 0.0023 24.8 3.7 30 95-124 64-93 (161)
64 cd00089 HR1 Protein kinase C-r 24.7 1.8E+02 0.0038 20.2 4.4 29 97-125 42-70 (72)
65 PF04102 SlyX: SlyX; InterPro 24.4 1.1E+02 0.0024 21.5 3.3 28 97-124 25-52 (69)
66 PF05120 GvpG: Gas vesicle pro 24.1 89 0.0019 23.1 2.8 33 91-123 8-40 (79)
67 PRK04325 hypothetical protein; 24.0 2.2E+02 0.0047 20.4 4.8 29 96-124 29-57 (74)
68 PF03242 LEA_3: Late embryogen 23.7 27 0.00057 26.6 0.0 20 81-100 58-77 (93)
69 PRK11677 hypothetical protein; 23.4 95 0.0021 25.0 3.1 21 104-124 29-49 (134)
70 PF12808 Mto2_bdg: Micro-tubul 23.3 2.6E+02 0.0056 19.3 5.6 42 75-117 8-49 (52)
71 PF07334 IFP_35_N: Interferon- 23.0 1.2E+02 0.0026 22.5 3.4 25 99-123 2-26 (76)
72 PLN02910 polygalacturonate 4-a 22.8 2.7E+02 0.0058 28.2 6.6 60 67-130 247-308 (657)
73 PF07820 TraC: TraC-like prote 22.7 1.4E+02 0.0031 22.9 3.8 23 99-121 4-26 (92)
74 smart00338 BRLZ basic region l 22.6 2.1E+02 0.0046 19.3 4.4 28 96-123 32-59 (65)
75 TIGR00293 prefoldin, archaeal 22.4 1.9E+02 0.0041 21.7 4.5 30 97-126 6-35 (126)
76 PRK01203 prefoldin subunit alp 22.4 1.5E+02 0.0032 23.9 4.0 27 98-124 8-34 (130)
77 COG3879 Uncharacterized protei 22.1 1.3E+02 0.0028 26.8 4.0 41 82-124 44-84 (247)
78 PTZ00464 SNF-7-like protein; P 22.0 2.9E+02 0.0063 23.7 6.0 29 97-125 25-53 (211)
79 cd00584 Prefoldin_alpha Prefol 21.8 2E+02 0.0043 21.7 4.5 28 98-125 7-34 (129)
80 PF00172 Zn_clus: Fungal Zn(2) 21.8 59 0.0013 20.2 1.3 15 19-33 1-15 (40)
81 PRK14625 hypothetical protein; 21.6 1.5E+02 0.0032 23.1 3.8 26 99-124 4-29 (109)
82 PF14071 YlbD_coat: Putative c 21.5 2E+02 0.0043 23.1 4.6 31 100-130 80-110 (124)
83 PRK14127 cell division protein 21.4 1.9E+02 0.004 22.6 4.3 25 98-122 45-69 (109)
84 PF12001 DUF3496: Domain of un 21.1 1.4E+02 0.003 23.5 3.5 25 101-125 4-36 (111)
85 PRK14626 hypothetical protein; 20.9 1.7E+02 0.0037 22.6 4.0 28 97-124 5-32 (110)
86 PF12718 Tropomyosin_1: Tropom 20.6 1.7E+02 0.0036 23.4 4.0 27 98-124 36-62 (143)
87 PF09789 DUF2353: Uncharacteri 20.6 1.3E+02 0.0028 27.7 3.7 36 92-127 191-226 (319)
88 PF07716 bZIP_2: Basic region 20.5 2.6E+02 0.0056 18.4 4.3 25 99-123 27-51 (54)
89 PRK14623 hypothetical protein; 20.4 1.6E+02 0.0035 22.7 3.8 26 99-124 3-28 (106)
No 1
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=100.00 E-value=1.1e-50 Score=308.42 Aligned_cols=101 Identities=60% Similarity=1.134 Sum_probs=99.7
Q ss_pred CcHHhHHhhhcCCCCCccCCCCCCCChhHHHHHHHhhccchHHHHhhcCCCccchhHHHHHHHHHhhhccCCCcchHHHH
Q 036565 20 SCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAI 99 (180)
Q Consensus 20 ~CAACK~lRRkC~~~Ci~APYFP~~~~~~F~~vhkvFG~snv~k~L~~lp~~~R~~a~~SL~YEA~aR~rDPVyGc~G~I 99 (180)
+|||||||||||+++|+||||||++++++|++||||||++||+|||+++|+++|+++|+||+|||++|.+||||||+|+|
T Consensus 1 ~CaaCk~lRr~C~~~C~laPyFP~~~~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~Gc~G~i 80 (101)
T PF03195_consen 1 PCAACKHLRRRCSPDCVLAPYFPADQPQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYGCVGII 80 (101)
T ss_pred CChHHHHHhCCCCCCCcCCCCCChhHHHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcchHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 036565 100 ALLQRKMIELQQDLAVARARL 120 (180)
Q Consensus 100 ~~Lq~qi~~lq~eLa~~~~~L 120 (180)
+.||+||+++++||+.++++|
T Consensus 81 ~~L~~ql~~~~~el~~~~~~l 101 (101)
T PF03195_consen 81 SQLQQQLQQLQAELALVRAQL 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHHccC
Confidence 999999999999999999886
No 2
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.46 E-value=5.6 Score=34.92 Aligned_cols=68 Identities=16% Similarity=0.215 Sum_probs=58.0
Q ss_pred hHHHHhhcCCCccchhHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 036565 60 NVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTPA 127 (180)
Q Consensus 60 nv~k~L~~lp~~~R~~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eLa~~~~~La~~~~~~ 127 (180)
|+..-|+......|+..+..||-||-++.-|--|=-+-.|..+++-|+.++.+|+.++.+|+....-.
T Consensus 11 ~lf~rlk~a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq~~~ 78 (233)
T COG3416 11 NLFHRLKKAEANERDPQAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAILQAGE 78 (233)
T ss_pred HHHHHHhhcccCCCChHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33444566677799999999999999999999999999999999999999999999999998776643
No 3
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=78.23 E-value=5 Score=27.24 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 036565 99 IALLQRKMIELQQDLAVARARLARYTTPA 127 (180)
Q Consensus 99 I~~Lq~qi~~lq~eLa~~~~~La~~~~~~ 127 (180)
|..|.+|++.||.+|..+++-+..|+-..
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yKKa~ 29 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYKKAE 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999987543
No 4
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=77.78 E-value=9 Score=28.49 Aligned_cols=66 Identities=15% Similarity=0.403 Sum_probs=49.5
Q ss_pred CChhHHHHHHHhhccchHHHHhhcCCCccch--hHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHH
Q 036565 44 DEPKKFAKVHKVFGASNVSKILTEVPEEQRE--DTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDL 113 (180)
Q Consensus 44 ~~~~~F~~vhkvFG~snv~k~L~~lp~~~R~--~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL 113 (180)
++|+.|....+ .-+-.++...|++.+. .++.+-|=---.|.++|+..|+-+...++.++..++..|
T Consensus 15 ~dPe~fe~lr~----~~~ee~I~~a~~~~q~rL~~lQ~~Id~~~~~~knP~~~~~~l~~~m~~~~~~l~~~l 82 (83)
T PF11333_consen 15 NDPEAFEQLRQ----ELIEEMIESAPEEMQPRLRALQFHIDMQRSRCKNPLHRCVLLSRMMYEQFYKLNDAL 82 (83)
T ss_pred hCHHHHHHHHH----HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHhh
Confidence 46788877643 4566788889987654 445555555556789999999999999999998877655
No 5
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=77.64 E-value=5.5 Score=29.97 Aligned_cols=31 Identities=26% Similarity=0.402 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 036565 95 CIGAIALLQRKMIELQQDLAVARARLARYTT 125 (180)
Q Consensus 95 c~G~I~~Lq~qi~~lq~eLa~~~~~La~~~~ 125 (180)
.+++|..|-.||+++++|+...+++|.+|..
T Consensus 69 gialvl~LLd~i~~Lr~el~~L~~~l~~~~~ 99 (101)
T PRK10265 69 GIAVALTLLDEIAHLKQENRLLRQRLSRFVA 99 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4899999999999999999999999999864
No 6
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=77.21 E-value=2.3 Score=32.24 Aligned_cols=24 Identities=38% Similarity=0.466 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036565 96 IGAIALLQRKMIELQQDLAVARAR 119 (180)
Q Consensus 96 ~G~I~~Lq~qi~~lq~eLa~~~~~ 119 (180)
.-.|..|...|..||+||+.+|++
T Consensus 72 h~aIq~LdKtIS~LEMELAaARa~ 95 (95)
T PF13334_consen 72 HEAIQSLDKTISSLEMELAAARAE 95 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456889999999999999998864
No 7
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=76.59 E-value=3.1 Score=36.59 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCcccc
Q 036565 104 RKMIELQQDLAVARARLARYTTPAASSC 131 (180)
Q Consensus 104 ~qi~~lq~eLa~~~~~La~~~~~~~~~~ 131 (180)
++|..||.||+.+|+|||.+...+....
T Consensus 122 qKIsALEdELs~LRaQIA~IV~~qe~~~ 149 (253)
T PF05308_consen 122 QKISALEDELSRLRAQIAKIVAAQEQSN 149 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 6788899999999999999987776653
No 8
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=74.57 E-value=17 Score=31.98 Aligned_cols=63 Identities=17% Similarity=0.230 Sum_probs=56.5
Q ss_pred hHHHHhhcCCCccchhHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036565 60 NVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLAR 122 (180)
Q Consensus 60 nv~k~L~~lp~~~R~~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eLa~~~~~La~ 122 (180)
++..-|+.++...|+.-++.||-|+-.|.-|-+|=-+=.|..+++-|++++++++.++++|..
T Consensus 11 ~lf~RL~~ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 11 DLFSRLKQAEAQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344557778888999999999999999999999999999999999999999999999999865
No 9
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=68.46 E-value=6.7 Score=31.46 Aligned_cols=82 Identities=21% Similarity=0.242 Sum_probs=54.5
Q ss_pred hhHHHHHHHhhccchHHHHhhcCCCccch---hHHHHHHHHHhhhccCCCcc-----hHHHHHHHHHHHHHHHHHHHHHH
Q 036565 46 PKKFAKVHKVFGASNVSKILTEVPEEQRE---DTVNSLAYEAEARLRDPVYG-----CIGAIALLQRKMIELQQDLAVAR 117 (180)
Q Consensus 46 ~~~F~~vhkvFG~snv~k~L~~lp~~~R~---~a~~SL~YEA~aR~rDPVyG-----c~G~I~~Lq~qi~~lq~eLa~~~ 117 (180)
..-|.|.|.-||-+.|.|.|..|-.+.+- ..=.+.||=++--.-+-+.. --.-|..|+.++..++.++..++
T Consensus 20 ~di~~nL~~~~~K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~ 99 (169)
T PF07106_consen 20 QDIFDNLHNKVGKTAVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLE 99 (169)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999888654432 22334455444333221111 12357788888888888888888
Q ss_pred HHHHhhhCCC
Q 036565 118 ARLARYTTPA 127 (180)
Q Consensus 118 ~~La~~~~~~ 127 (180)
++|+......
T Consensus 100 ~eL~~L~~~~ 109 (169)
T PF07106_consen 100 AELASLSSEP 109 (169)
T ss_pred HHHHHHhcCC
Confidence 8888765443
No 10
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=57.81 E-value=20 Score=25.23 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 036565 99 IALLQRKMIELQQDLAVARARLARYTTP 126 (180)
Q Consensus 99 I~~Lq~qi~~lq~eLa~~~~~La~~~~~ 126 (180)
|-.|+..|..|++|++.++++++.-++.
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~a~ 50 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKSAS 50 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999998875543
No 11
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=56.06 E-value=13 Score=34.71 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036565 97 GAIALLQRKMIELQQDLAVARAR 119 (180)
Q Consensus 97 G~I~~Lq~qi~~lq~eLa~~~~~ 119 (180)
-.|..||+||.+||+||..++++
T Consensus 42 ~~i~~Lq~QI~~Lq~ei~~l~~~ 64 (383)
T PF12097_consen 42 QEISELQKQIQQLQAEINQLEEQ 64 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 35889999999999999988877
No 12
>PLN02523 galacturonosyltransferase
Probab=50.97 E-value=32 Score=33.82 Aligned_cols=63 Identities=17% Similarity=0.208 Sum_probs=50.5
Q ss_pred HHhhcCCC--ccchhHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccc
Q 036565 63 KILTEVPE--EQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTPAASS 130 (180)
Q Consensus 63 k~L~~lp~--~~R~~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eLa~~~~~La~~~~~~~~~ 130 (180)
..+.+||+ .+|-.+|+.++++|.. +|-|..+|.+|+..|..+++++..++.|=+.+...++.+
T Consensus 145 ~~~~~~~~~~~~~~k~~~~~~~~a~~-----~~d~~~~~~kl~~~~~~~e~~~~~~~~q~~~~~~laa~t 209 (559)
T PLN02523 145 DVLRQFEKEVKERVKVARQMIAESKE-----SFDNQLKIQKLKDTIFAVNEQLTKAKKNGAFASLIAAKS 209 (559)
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHHh-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34567764 4577899999999993 445678999999999999999999998888776666554
No 13
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=48.38 E-value=37 Score=26.75 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=27.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 036565 93 YGCIGAIALLQRKMIELQQDLAVARARLARYTTP 126 (180)
Q Consensus 93 yGc~G~I~~Lq~qi~~lq~eLa~~~~~La~~~~~ 126 (180)
...+++|..|+.+|..++.|+..++.+|++....
T Consensus 12 ~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~ 45 (120)
T PF12325_consen 12 GPSVQLVERLQSQLRRLEGELASLQEELARLEAE 45 (120)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888899999999999999999888876443
No 14
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=47.88 E-value=34 Score=24.62 Aligned_cols=31 Identities=35% Similarity=0.485 Sum_probs=22.7
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036565 91 PVYGCIGAIALLQRKMIELQQDLAVARARLAR 122 (180)
Q Consensus 91 PVyGc~G~I~~Lq~qi~~lq~eLa~~~~~La~ 122 (180)
|+-|. ..|..|..|++.+++||+..+++|.+
T Consensus 60 ~l~~i-~~~l~l~~~~~~l~~~l~~l~~~~~~ 90 (91)
T cd04766 60 NLAGV-KRILELEEELAELRAELDELRARLRR 90 (91)
T ss_pred CHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 43433 34445999999999999999988753
No 15
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=47.47 E-value=36 Score=24.57 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036565 99 IALLQRKMIELQQDLAVARARLARYT 124 (180)
Q Consensus 99 I~~Lq~qi~~lq~eLa~~~~~La~~~ 124 (180)
+..|.+.|.-||+|++.+++|++.-.
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~kK~ 52 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAKKK 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44677888888888888888887643
No 16
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=46.35 E-value=69 Score=24.15 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036565 95 CIGAIALLQRKMIELQQDLAVARARLAR 122 (180)
Q Consensus 95 c~G~I~~Lq~qi~~lq~eLa~~~~~La~ 122 (180)
|...+..++.+|++.+++|+.++++|..
T Consensus 78 ~~~~~~~~~~~l~~~~~~L~~l~~~L~~ 105 (107)
T cd01111 78 PEACLAQLRQKIEVRRAALNALTTQLAE 105 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888999999999999999999875
No 17
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=45.05 E-value=51 Score=22.16 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 036565 100 ALLQRKMIELQQDLAVARARLARY 123 (180)
Q Consensus 100 ~~Lq~qi~~lq~eLa~~~~~La~~ 123 (180)
..+++++..++.+++.++++++.-
T Consensus 44 ~~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 44 LRLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556888888888888888888753
No 18
>PF14282 FlxA: FlxA-like protein
Probab=43.93 E-value=38 Score=25.71 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036565 98 AIALLQRKMIELQQDLAVARARLARYT 124 (180)
Q Consensus 98 ~I~~Lq~qi~~lq~eLa~~~~~La~~~ 124 (180)
-+..||.||..|+++|+.++.+.+.-.
T Consensus 52 q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 52 QIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888887777543
No 19
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=43.53 E-value=44 Score=25.23 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 036565 99 IALLQRKMIELQQDLAVARARLARYTT 125 (180)
Q Consensus 99 I~~Lq~qi~~lq~eLa~~~~~La~~~~ 125 (180)
+..|+.+.++++.|.+.+.+++..|.-
T Consensus 32 ~~kL~~en~qlk~Ek~~~~~qvkn~~v 58 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKAVAETQVKNAKV 58 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888888888887753
No 20
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=43.51 E-value=30 Score=25.01 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 036565 96 IGAIALLQRKMIELQQDLAVAR 117 (180)
Q Consensus 96 ~G~I~~Lq~qi~~lq~eLa~~~ 117 (180)
+++|..|-.+|+.+++||...+
T Consensus 62 i~lil~LLd~i~~L~~el~~L~ 83 (84)
T PF13591_consen 62 IALILDLLDRIEQLRRELRELR 83 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 8899999999999999998776
No 21
>PRK00295 hypothetical protein; Provisional
Probab=42.14 E-value=78 Score=22.39 Aligned_cols=29 Identities=21% Similarity=0.145 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036565 96 IGAIALLQRKMIELQQDLAVARARLARYT 124 (180)
Q Consensus 96 ~G~I~~Lq~qi~~lq~eLa~~~~~La~~~ 124 (180)
-.+|...|++|..++.+|..+..+|....
T Consensus 25 n~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 25 NDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677788888888888888888888754
No 22
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=41.70 E-value=47 Score=22.60 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 036565 99 IALLQRKMIELQQDLAVARARLARY 123 (180)
Q Consensus 99 I~~Lq~qi~~lq~eLa~~~~~La~~ 123 (180)
|..|+.++++++++....+.++...
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555544
No 23
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=40.71 E-value=57 Score=22.91 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036565 99 IALLQRKMIELQQDLAVARARLA 121 (180)
Q Consensus 99 I~~Lq~qi~~lq~eLa~~~~~La 121 (180)
|+.|+.+|.+|+.++..++.++.
T Consensus 12 Vq~L~~kvdqLs~dv~~lr~~v~ 34 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNALRADVQ 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666555554
No 24
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=40.27 E-value=34 Score=25.65 Aligned_cols=63 Identities=16% Similarity=0.217 Sum_probs=40.4
Q ss_pred cchhHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccccchhhccCCCCCCCC
Q 036565 72 QREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTPAASSCAVLNDLCVGGSPAFSD 147 (180)
Q Consensus 72 ~R~~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eLa~~~~~La~~~~~~~~~~~~~~~~~~~~~p~~~~ 147 (180)
.|..|....--|...+.. .-.-|..|+.+|..++.+.......|..|..-. +.|....|..++
T Consensus 61 k~~rA~k~a~~e~k~~~~-----k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~Y~--------~fL~~v~~~~~e 123 (126)
T PF13863_consen 61 KRERAEKRAEEEKKKKEE-----KEAEIKKLKAELEELKSEISKLEEKLEEYKKYE--------EFLEKVVPKSPE 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhcccccC
Confidence 344555555555544432 256788888888888888888888888876554 444444444444
No 25
>PRK04406 hypothetical protein; Provisional
Probab=39.51 E-value=85 Score=22.74 Aligned_cols=29 Identities=10% Similarity=0.155 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036565 96 IGAIALLQRKMIELQQDLAVARARLARYT 124 (180)
Q Consensus 96 ~G~I~~Lq~qi~~lq~eLa~~~~~La~~~ 124 (180)
-.+|...|++|..++.+|..+..+|....
T Consensus 31 N~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 31 NDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45677778888888888888888887643
No 26
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=38.65 E-value=26 Score=31.48 Aligned_cols=35 Identities=20% Similarity=0.575 Sum_probs=27.9
Q ss_pred CCCCCCCChhHHHHHHHhhccchHHHHhhcCCCccc
Q 036565 38 APYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQR 73 (180)
Q Consensus 38 APYFP~~~~~~F~~vhkvFG~snv~k~L~~lp~~~R 73 (180)
-||+|.. ++.-..+-+.||.++|-.+...+|.+.|
T Consensus 2 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 36 (447)
T PRK00451 2 MPYIPHT-EEDIREMLDAIGVKSIDELFADIPEELR 36 (447)
T ss_pred CCCCCCC-HHHHHHHHHHhCCCCHHHHHHhCCHHHH
Confidence 3899996 7888888999999999877777765444
No 27
>PRK00846 hypothetical protein; Provisional
Probab=38.06 E-value=89 Score=23.07 Aligned_cols=31 Identities=10% Similarity=-0.106 Sum_probs=24.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036565 94 GCIGAIALLQRKMIELQQDLAVARARLARYT 124 (180)
Q Consensus 94 Gc~G~I~~Lq~qi~~lq~eLa~~~~~La~~~ 124 (180)
---.+|...|++|..++.+|..+..+|....
T Consensus 31 ~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 31 ELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456777788888888888888888888765
No 28
>PRK02793 phi X174 lysis protein; Provisional
Probab=38.04 E-value=94 Score=22.21 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036565 96 IGAIALLQRKMIELQQDLAVARARLARYT 124 (180)
Q Consensus 96 ~G~I~~Lq~qi~~lq~eLa~~~~~La~~~ 124 (180)
--+|...|++|..++.+|..+..+|....
T Consensus 28 n~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 28 NVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34667778888888888888888888754
No 29
>PRK00736 hypothetical protein; Provisional
Probab=37.37 E-value=1e+02 Score=21.84 Aligned_cols=29 Identities=10% Similarity=0.157 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036565 96 IGAIALLQRKMIELQQDLAVARARLARYT 124 (180)
Q Consensus 96 ~G~I~~Lq~qi~~lq~eLa~~~~~La~~~ 124 (180)
-.+|..-|++|..++.+|..+..+|....
T Consensus 25 n~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 25 SDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34667778888888888888888887653
No 30
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=36.75 E-value=59 Score=24.76 Aligned_cols=20 Identities=20% Similarity=0.059 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 036565 99 IALLQRKMIELQQDLAVARA 118 (180)
Q Consensus 99 I~~Lq~qi~~lq~eLa~~~~ 118 (180)
+..+++++++++++++.+++
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~ 48 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKA 48 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555544444444433
No 31
>PF08227 DASH_Hsk3: DASH complex subunit Hsk3 like; InterPro: IPR013183 This is a family of fungal proteins of unknown function.
Probab=36.64 E-value=71 Score=21.41 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036565 98 AIALLQRKMIELQQDLAVARARLARY 123 (180)
Q Consensus 98 ~I~~Lq~qi~~lq~eLa~~~~~La~~ 123 (180)
-+++|..|+++|++-|+.+.++|...
T Consensus 3 q~s~L~~qL~qL~aNL~~t~~~l~~~ 28 (45)
T PF08227_consen 3 QYSHLASQLAQLQANLADTENLLEMT 28 (45)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 46789999999999999999888764
No 32
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=35.05 E-value=67 Score=22.46 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 036565 97 GAIALLQRKMIELQQDLAVARARLARYTT 125 (180)
Q Consensus 97 G~I~~Lq~qi~~lq~eLa~~~~~La~~~~ 125 (180)
.-+..++++++++++|-..++.++.....
T Consensus 31 ~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 31 NELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34555666666666666666666665443
No 33
>PRK02119 hypothetical protein; Provisional
Probab=34.82 E-value=1.1e+02 Score=21.92 Aligned_cols=29 Identities=17% Similarity=0.063 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036565 96 IGAIALLQRKMIELQQDLAVARARLARYT 124 (180)
Q Consensus 96 ~G~I~~Lq~qi~~lq~eLa~~~~~La~~~ 124 (180)
-.+|..-|++|..++.+|..+..+|....
T Consensus 29 N~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 29 NQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35667778888888888888888887643
No 34
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=34.52 E-value=1e+02 Score=20.90 Aligned_cols=30 Identities=13% Similarity=0.191 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 036565 98 AIALLQRKMIELQQDLAVARARLARYTTPA 127 (180)
Q Consensus 98 ~I~~Lq~qi~~lq~eLa~~~~~La~~~~~~ 127 (180)
.+..+++++.+++.+++.++++.......-
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei 47 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEI 47 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888888877665443
No 35
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=34.40 E-value=57 Score=28.38 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036565 97 GAIALLQRKMIELQQDLAVARARLAR 122 (180)
Q Consensus 97 G~I~~Lq~qi~~lq~eLa~~~~~La~ 122 (180)
..+..||+||+++|.|++.+|-+|..
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~ 79 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQE 79 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 35567888888888888877766654
No 36
>PHA02562 46 endonuclease subunit; Provisional
Probab=33.98 E-value=70 Score=29.60 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=11.0
Q ss_pred CCCCCCChhHHHHHHHhhccchH
Q 036565 39 PYFRSDEPKKFAKVHKVFGASNV 61 (180)
Q Consensus 39 PYFP~~~~~~F~~vhkvFG~snv 61 (180)
|.++.....+-..+.++||.+..
T Consensus 143 ~f~~~~~~er~~il~~l~~~~~~ 165 (562)
T PHA02562 143 PFMQLSAPARRKLVEDLLDISVL 165 (562)
T ss_pred hHhcCChHhHHHHHHHHhCCHHH
Confidence 33343334444555666665533
No 37
>PLN02742 Probable galacturonosyltransferase
Probab=33.74 E-value=84 Score=30.88 Aligned_cols=56 Identities=20% Similarity=0.277 Sum_probs=46.1
Q ss_pred ccchhHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccc
Q 036565 71 EQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTPAASS 130 (180)
Q Consensus 71 ~~R~~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eLa~~~~~La~~~~~~~~~ 130 (180)
+.+-.+|+.++++|..-. |.|..++.+|.+.|..+++|+..++.|=+.+...++.+
T Consensus 132 ~~~~~~m~~~i~~ak~~~----~d~~~~~~klr~~l~~~e~~~~~~~~q~~~~~~laa~t 187 (534)
T PLN02742 132 EPIIRDLAALIYQAQDLH----YDSATTIMTLKAHIQALEERANAATVQSTKFGQLAAEA 187 (534)
T ss_pred HHHHHHHHHHHHHHHhcc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456678888888886544 66999999999999999999999999888777666655
No 38
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=33.54 E-value=68 Score=32.00 Aligned_cols=64 Identities=20% Similarity=0.397 Sum_probs=49.9
Q ss_pred hccchHHHHhhcC-------------CC--ccchhHHHHHHHHHhhhc------cCCCcchHHHHHHHHHHHHHHHHHHH
Q 036565 56 FGASNVSKILTEV-------------PE--EQREDTVNSLAYEAEARL------RDPVYGCIGAIALLQRKMIELQQDLA 114 (180)
Q Consensus 56 FG~snv~k~L~~l-------------p~--~~R~~a~~SL~YEA~aR~------rDPVyGc~G~I~~Lq~qi~~lq~eLa 114 (180)
|.-|.++++||.- .| +.-+++.+||.|++.++- +++|-.-.-++..+|+++..+++++.
T Consensus 283 YRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~ 362 (675)
T KOG0242|consen 283 YRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELE 362 (675)
T ss_pred ccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHH
Confidence 4456667777532 33 357899999999999986 88899989999999999999999998
Q ss_pred HHHHH
Q 036565 115 VARAR 119 (180)
Q Consensus 115 ~~~~~ 119 (180)
..+..
T Consensus 363 ~~~~~ 367 (675)
T KOG0242|consen 363 RLKKK 367 (675)
T ss_pred hhccc
Confidence 74433
No 39
>PF04706 Dickkopf_N: Dickkopf N-terminal cysteine-rich region; InterPro: IPR006796 Dickkopf proteins are a class of Wnt antagonists. They possess two conserved cysteine-rich regions. This family represents the N-terminal conserved region []. The C-terminal region has been found to share significant sequence similarity to the colipase fold (IPR001981 from INTERPRO) [].; GO: 0007275 multicellular organismal development, 0030178 negative regulation of Wnt receptor signaling pathway, 0005576 extracellular region
Probab=33.00 E-value=25 Score=24.07 Aligned_cols=18 Identities=22% Similarity=0.709 Sum_probs=15.7
Q ss_pred CCCCcHHhHHhhhcCCCC
Q 036565 17 SSSSCAACKLLKRKCIPT 34 (180)
Q Consensus 17 ~~~~CAACK~lRRkC~~~ 34 (180)
..+.|..||-+|++|..|
T Consensus 19 ~~~~C~~Cr~~~~rC~Rd 36 (52)
T PF04706_consen 19 FESKCLPCRKRRKRCTRD 36 (52)
T ss_pred CCccChhhccCCCCCCCC
Confidence 348999999999999986
No 40
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=32.50 E-value=91 Score=25.71 Aligned_cols=43 Identities=26% Similarity=0.365 Sum_probs=28.1
Q ss_pred hHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036565 75 DTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYT 124 (180)
Q Consensus 75 ~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eLa~~~~~La~~~ 124 (180)
.++++-+-++--++.||. ..|.+.|.+++.+|..++..++...
T Consensus 8 ~~~~a~~~~~ld~~EDP~-------~~l~q~ird~e~~l~~a~~~~a~~~ 50 (221)
T PF04012_consen 8 TLVKANINELLDKAEDPE-------KMLEQAIRDMEEQLRKARQALARVM 50 (221)
T ss_pred HHHHHHHHHHHHhhcCHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666777776 5566666677777776666666543
No 41
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=32.41 E-value=1.3e+02 Score=26.54 Aligned_cols=73 Identities=26% Similarity=0.295 Sum_probs=43.5
Q ss_pred CCChhHHHHHHHhhccchHHHHhhcCCCccchhHHHHHHHHHhhh-ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036565 43 SDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEAR-LRDPVYGCIGAIALLQRKMIELQQDLAVARARLA 121 (180)
Q Consensus 43 ~~~~~~F~~vhkvFG~snv~k~L~~lp~~~R~~a~~SL~YEA~aR-~rDPVyGc~G~I~~Lq~qi~~lq~eLa~~~~~La 121 (180)
+++..+-..|..+-|..-+-.+..+++ +..|+.-|..= .+-|+.|.-.-|..|.++.+++..+++..+++++
T Consensus 132 ~~~~~~~~avA~vlG~~m~~e~~~d~d-------vevLL~~ae~L~~vYP~~ga~eki~~Lr~~y~~l~~~i~~lE~~Va 204 (259)
T PF08657_consen 132 SRKQRRNTAVALVLGGVMHEEIVEDVD-------VEVLLRGAEKLCNVYPLPGAREKIAALRQRYNQLSNSIAYLEAEVA 204 (259)
T ss_pred chHHHHHHHHHHhccCcccccccccCC-------HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445666666543333322222 33333333322 2669999999999988888888777777777776
Q ss_pred h
Q 036565 122 R 122 (180)
Q Consensus 122 ~ 122 (180)
.
T Consensus 205 e 205 (259)
T PF08657_consen 205 E 205 (259)
T ss_pred H
Confidence 4
No 42
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=31.95 E-value=99 Score=21.63 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 036565 102 LQRKMIELQQDLAVARARLA 121 (180)
Q Consensus 102 Lq~qi~~lq~eLa~~~~~La 121 (180)
+++.|+.|+++|..++.++.
T Consensus 30 iEqRLa~LE~rL~~ae~ra~ 49 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQ 49 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555554444444
No 43
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=31.94 E-value=73 Score=18.70 Aligned_cols=19 Identities=21% Similarity=0.499 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 036565 99 IALLQRKMIELQQDLAVAR 117 (180)
Q Consensus 99 I~~Lq~qi~~lq~eLa~~~ 117 (180)
|..|+..|.+|+.+|+.-+
T Consensus 3 ~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSECR 21 (23)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5677888888888877543
No 44
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=31.54 E-value=1.2e+02 Score=18.10 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 036565 102 LQRKMIELQQDLAVARARLARY 123 (180)
Q Consensus 102 Lq~qi~~lq~eLa~~~~~La~~ 123 (180)
.|..+.+-|+||+.++...+.+
T Consensus 3 Yqakla~YqaeLa~vqk~na~~ 24 (25)
T PF06696_consen 3 YQAKLAQYQAELARVQKANADY 24 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 4667888889999998887753
No 45
>PHA02047 phage lambda Rz1-like protein
Probab=31.44 E-value=1e+02 Score=24.04 Aligned_cols=26 Identities=12% Similarity=0.082 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCC
Q 036565 102 LQRKMIELQQDLAVARARLARYTTPA 127 (180)
Q Consensus 102 Lq~qi~~lq~eLa~~~~~La~~~~~~ 127 (180)
-++.++++.++|+.++.++..|+...
T Consensus 32 ~h~~a~~la~qLE~a~~r~~~~Q~~V 57 (101)
T PHA02047 32 AHEEAKRQTARLEALEVRYATLQRHV 57 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677888888888888888876544
No 46
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=31.31 E-value=57 Score=25.51 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 036565 100 ALLQRKMIELQQDLAVARARLARYT 124 (180)
Q Consensus 100 ~~Lq~qi~~lq~eLa~~~~~La~~~ 124 (180)
..|+++|++.+.||+.-|+++..|-
T Consensus 28 ~~l~~eL~~~k~el~~yk~~V~~HF 52 (128)
T PF06295_consen 28 AKLEQELEQAKQELEQYKQEVNDHF 52 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666655543
No 47
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=30.47 E-value=75 Score=30.91 Aligned_cols=30 Identities=30% Similarity=0.347 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 036565 96 IGAIALLQRKMIELQQDLAVARARLARYTT 125 (180)
Q Consensus 96 ~G~I~~Lq~qi~~lq~eLa~~~~~La~~~~ 125 (180)
.--|..||.||+.||.|+..++++|+.-..
T Consensus 24 a~~i~~L~~ql~aLq~~v~eL~~~laa~~~ 53 (514)
T PF11336_consen 24 ADQIKALQAQLQALQDQVNELRAKLAAKPA 53 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 356889999999999999999999986443
No 48
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=30.27 E-value=82 Score=25.78 Aligned_cols=54 Identities=22% Similarity=0.295 Sum_probs=35.5
Q ss_pred ccchhHHHHHHHHHhhhccC--CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036565 71 EQREDTVNSLAYEAEARLRD--PVYGCIGAIALLQRKMIELQQDLAVARARLARYT 124 (180)
Q Consensus 71 ~~R~~a~~SL~YEA~aR~rD--PVyGc~G~I~~Lq~qi~~lq~eLa~~~~~La~~~ 124 (180)
.||..+.+-==|-+++|++- --..--.-=..|++||+.|..|++.++-|+-.|+
T Consensus 53 KQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k 108 (135)
T KOG4196|consen 53 KQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYK 108 (135)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777778999998741 0011111224578888888888888888887665
No 49
>PRK09039 hypothetical protein; Validated
Probab=29.33 E-value=72 Score=28.91 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036565 97 GAIALLQRKMIELQQDLAVARARLARY 123 (180)
Q Consensus 97 G~I~~Lq~qi~~lq~eLa~~~~~La~~ 123 (180)
..|..|++||+.|+.+|+.++++|...
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le~~L~~a 163 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALEAALDAS 163 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667666666666666666543
No 50
>PF15483 DUF4641: Domain of unknown function (DUF4641)
Probab=29.32 E-value=59 Score=31.21 Aligned_cols=31 Identities=23% Similarity=0.557 Sum_probs=24.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036565 92 VYGCIGAIALLQRKMIELQQDLAVARARLARY 123 (180)
Q Consensus 92 VyGc~G~I~~Lq~qi~~lq~eLa~~~~~La~~ 123 (180)
+-||-.-| .||++|++|++||+.++.-...+
T Consensus 414 ~qGCpRC~-~LQkEIedLreQLaamqsl~~kf 444 (445)
T PF15483_consen 414 AQGCPRCL-VLQKEIEDLREQLAAMQSLADKF 444 (445)
T ss_pred CCCCcccH-HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34565554 58999999999999999877654
No 51
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=28.93 E-value=93 Score=30.20 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=22.9
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036565 90 DPVYGCIGAIALLQRKMIELQQDLAVARARLAR 122 (180)
Q Consensus 90 DPVyGc~G~I~~Lq~qi~~lq~eLa~~~~~La~ 122 (180)
.|.....--|..+| ||++|++||+.+++|+..
T Consensus 18 ~~~~a~~~~~~~~q-kie~L~kql~~Lk~q~~~ 49 (489)
T PF11853_consen 18 LPAAAMADDIDLLQ-KIEALKKQLEELKAQQDD 49 (489)
T ss_pred cchhhhhhhhHHHH-HHHHHHHHHHHHHHhhcc
Confidence 34444444555566 999999999999999774
No 52
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=28.89 E-value=1e+02 Score=22.43 Aligned_cols=29 Identities=14% Similarity=0.251 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036565 96 IGAIALLQRKMIELQQDLAVARARLARYT 124 (180)
Q Consensus 96 ~G~I~~Lq~qi~~lq~eLa~~~~~La~~~ 124 (180)
-..+..|+.+|+.++.+++.++.++....
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~ 97 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQALE 97 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777888888888888888877776543
No 53
>PF14282 FlxA: FlxA-like protein
Probab=28.62 E-value=65 Score=24.43 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036565 96 IGAIALLQRKMIELQQDLAVARA 118 (180)
Q Consensus 96 ~G~I~~Lq~qi~~lq~eLa~~~~ 118 (180)
-..|..|+.||..|+.+|..+..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 55666677777666666655544
No 54
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=28.04 E-value=95 Score=27.65 Aligned_cols=47 Identities=26% Similarity=0.348 Sum_probs=33.7
Q ss_pred HHHHhhcCCC-ccchhHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHH
Q 036565 61 VSKILTEVPE-EQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAV 115 (180)
Q Consensus 61 v~k~L~~lp~-~~R~~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eLa~ 115 (180)
+.+||+-+|+ ..|+.+|+.|--+-+.|. ..|.+||.++...+.-|+.
T Consensus 59 f~~llkla~eq~k~e~~m~~Lea~VEkrD--------~~IQqLqk~LK~aE~iLtt 106 (272)
T KOG4552|consen 59 FKTLLKLAPEQQKREQLMRTLEAHVEKRD--------EVIQQLQKNLKSAEVILTT 106 (272)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHH
Confidence 4456665664 558899999866666664 3699999999887766654
No 55
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=28.03 E-value=1e+02 Score=24.11 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCcc
Q 036565 104 RKMIELQQDLAVARARLARYTTPAAS 129 (180)
Q Consensus 104 ~qi~~lq~eLa~~~~~La~~~~~~~~ 129 (180)
++..+++.||+.++.+|..|+.....
T Consensus 25 ~~q~~l~~eL~~~k~el~~yk~~V~~ 50 (128)
T PF06295_consen 25 QKQAKLEQELEQAKQELEQYKQEVND 50 (128)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578999999999999999876543
No 56
>PF15300 INT_SG_DDX_CT_C: INTS6/SAGE1/DDX26B/CT45 C-terminus
Probab=27.45 E-value=46 Score=23.86 Aligned_cols=27 Identities=33% Similarity=0.453 Sum_probs=23.8
Q ss_pred chHHHHhhcC--CCccchhHHHHHHHHHh
Q 036565 59 SNVSKILTEV--PEEQREDTVNSLAYEAE 85 (180)
Q Consensus 59 snv~k~L~~l--p~~~R~~a~~SL~YEA~ 85 (180)
+.|.++|+.+ |.+.|...+..++.||.
T Consensus 23 e~iF~lL~~vqG~~~~r~~fv~~~IkEA~ 51 (65)
T PF15300_consen 23 EKIFKLLEQVQGPLEVRKQFVEMIIKEAA 51 (65)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 4788999988 78899999999999995
No 57
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=27.16 E-value=89 Score=27.00 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036565 96 IGAIALLQRKMIELQQDLAVARARLARYT 124 (180)
Q Consensus 96 ~G~I~~Lq~qi~~lq~eLa~~~~~La~~~ 124 (180)
.|-|+.|++|+.+.|+|++.=-++|...+
T Consensus 9 ~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr 37 (202)
T PF06818_consen 9 SGEISLLKQQLKESQAEVNQKDSEIVSLR 37 (202)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 58899999999999988876555555444
No 58
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=27.15 E-value=1.1e+02 Score=23.21 Aligned_cols=29 Identities=14% Similarity=0.054 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 036565 98 AIALLQRKMIELQQDLAVARARLARYTTP 126 (180)
Q Consensus 98 ~I~~Lq~qi~~lq~eLa~~~~~La~~~~~ 126 (180)
-|..|+.++.+++.|++.++..++.++..
T Consensus 79 ei~~L~~el~~L~~E~diLKKa~~~~~~~ 107 (121)
T PRK09413 79 QIKELQRLLGKKTMENELLKEAVEYGRAK 107 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 36677777777788888777777665543
No 59
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=27.04 E-value=1.6e+02 Score=21.05 Aligned_cols=31 Identities=10% Similarity=0.066 Sum_probs=23.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036565 94 GCIGAIALLQRKMIELQQDLAVARARLARYT 124 (180)
Q Consensus 94 Gc~G~I~~Lq~qi~~lq~eLa~~~~~La~~~ 124 (180)
|.+.-+......+.+|++|+...+.+|..++
T Consensus 37 ~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 37 SAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455566677788888888888888887765
No 60
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=27.00 E-value=87 Score=27.94 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=38.9
Q ss_pred hHHHHhhcCCCccchhHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036565 60 NVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYT 124 (180)
Q Consensus 60 nv~k~L~~lp~~~R~~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eLa~~~~~La~~~ 124 (180)
+++.+|+.-...+.. .+++=+-|.+.+. --.++.|++|+.++.+.+..++.+|....
T Consensus 52 ~~i~~le~~~~~~l~-~ak~eLqe~eek~-------e~~l~~Lq~ql~~l~akI~k~~~el~~L~ 108 (258)
T PF15397_consen 52 TAIDILEYSNHKQLQ-QAKAELQEWEEKE-------ESKLSKLQQQLEQLDAKIQKTQEELNFLS 108 (258)
T ss_pred HHHHHHHccChHHHH-HHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666665554444 3444444555444 35688999999999999999999987543
No 61
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=26.83 E-value=1.4e+02 Score=20.97 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036565 98 AIALLQRKMIELQQDLAVARARLA 121 (180)
Q Consensus 98 ~I~~Lq~qi~~lq~eLa~~~~~La 121 (180)
-|.+|++.|..++.++..++.|-+
T Consensus 18 kvdqLs~dv~~lr~~v~~ak~EAa 41 (56)
T PF04728_consen 18 KVDQLSSDVNALRADVQAAKEEAA 41 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555544
No 62
>TIGR03021 pilP_fam type IV pilus biogenesis protein PilP. Members of this protein family are found in type IV pilus biogenesis loci and include proteins designated PilP.
Probab=24.87 E-value=1.2e+02 Score=23.68 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHh
Q 036565 96 IGAIALLQRKMIELQQDLAVAR--ARLAR 122 (180)
Q Consensus 96 ~G~I~~Lq~qi~~lq~eLa~~~--~~La~ 122 (180)
+|-|..||.+..-++++++.+| ++|..
T Consensus 4 ~~eLe~iQ~et~LleAq~~~akaq~el~~ 32 (119)
T TIGR03021 4 VGQLEALQSETALLEAQLARAKAQNELEE 32 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5778889999888887777666 44543
No 63
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=24.78 E-value=1.1e+02 Score=24.84 Aligned_cols=30 Identities=23% Similarity=0.253 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036565 95 CIGAIALLQRKMIELQQDLAVARARLARYT 124 (180)
Q Consensus 95 c~G~I~~Lq~qi~~lq~eLa~~~~~La~~~ 124 (180)
=+.--.+|+++++.+++||+..++++...+
T Consensus 64 eFAkwaKl~Rk~~kl~~el~~~~~~~~~~~ 93 (161)
T PF04420_consen 64 EFAKWAKLNRKLDKLEEELEKLNKSLSSEK 93 (161)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677899999999999999999888654
No 64
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=24.69 E-value=1.8e+02 Score=20.19 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 036565 97 GAIALLQRKMIELQQDLAVARARLARYTT 125 (180)
Q Consensus 97 G~I~~Lq~qi~~lq~eLa~~~~~La~~~~ 125 (180)
|.+...+.++.+....|..++.+|..|..
T Consensus 42 ~~~~~~~~~l~es~~ki~~Lr~~L~k~~~ 70 (72)
T cd00089 42 KLLAEAEQMLRESKQKLELLKMQLEKLKQ 70 (72)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56667777888888888888888877653
No 65
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=24.43 E-value=1.1e+02 Score=21.48 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036565 97 GAIALLQRKMIELQQDLAVARARLARYT 124 (180)
Q Consensus 97 G~I~~Lq~qi~~lq~eLa~~~~~La~~~ 124 (180)
-+|...|++|..++.+|..+..+|....
T Consensus 25 ~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 25 DVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3556677788888888888887777654
No 66
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=24.07 E-value=89 Score=23.12 Aligned_cols=33 Identities=27% Similarity=0.267 Sum_probs=19.9
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036565 91 PVYGCIGAIALLQRKMIELQQDLAVARARLARY 123 (180)
Q Consensus 91 PVyGc~G~I~~Lq~qi~~lq~eLa~~~~~La~~ 123 (180)
||.|.+-+.-+++.+.+.---+-+.++++|+..
T Consensus 8 Pvrgv~wv~e~I~~~Ae~E~~Dp~~i~~~L~~L 40 (79)
T PF05120_consen 8 PVRGVVWVAEQIQEQAERELYDPAAIRRELAEL 40 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 666666666666666554444456677776643
No 67
>PRK04325 hypothetical protein; Provisional
Probab=24.00 E-value=2.2e+02 Score=20.43 Aligned_cols=29 Identities=17% Similarity=0.135 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036565 96 IGAIALLQRKMIELQQDLAVARARLARYT 124 (180)
Q Consensus 96 ~G~I~~Lq~qi~~lq~eLa~~~~~La~~~ 124 (180)
-.+|...|++|..++.+|..+..+|....
T Consensus 29 N~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 29 NATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677778888888888888888887653
No 68
>PF03242 LEA_3: Late embryogenesis abundant protein; InterPro: IPR004926 Late-embryogenesis abundant (LEA) genes encode a diverse group of proteins that accumulate to high levels during the maturation phase of seed development []. This group includes LEA-5 [], whose expression is induced by salt, drought and heat stress [], and related proteins. ; GO: 0006950 response to stress
Probab=23.70 E-value=27 Score=26.61 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=16.1
Q ss_pred HHHHhhhccCCCcchHHHHH
Q 036565 81 AYEAEARLRDPVYGCIGAIA 100 (180)
Q Consensus 81 ~YEA~aR~rDPVyGc~G~I~ 100 (180)
-.|-..|..|||-|++--..
T Consensus 58 ~~~~~~W~pDPvTGyyrPen 77 (93)
T PF03242_consen 58 SKEKSSWMPDPVTGYYRPEN 77 (93)
T ss_pred cccccccccCCCCccccCCC
Confidence 56677899999999986554
No 69
>PRK11677 hypothetical protein; Provisional
Probab=23.35 E-value=95 Score=25.03 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 036565 104 RKMIELQQDLAVARARLARYT 124 (180)
Q Consensus 104 ~qi~~lq~eLa~~~~~La~~~ 124 (180)
.+..+++.||+.++.+|..|+
T Consensus 29 ~~q~~le~eLe~~k~ele~Yk 49 (134)
T PRK11677 29 RQQQALQYELEKNKAELEEYR 49 (134)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
No 70
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=23.29 E-value=2.6e+02 Score=19.26 Aligned_cols=42 Identities=24% Similarity=0.187 Sum_probs=30.0
Q ss_pred hHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 036565 75 DTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVAR 117 (180)
Q Consensus 75 ~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eLa~~~ 117 (180)
+...-+.-|=++|..|+ .|+---|..|..+...|+++|...+
T Consensus 8 ELe~klkaerE~R~~d~-~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 8 ELERKLKAEREARSLDR-SAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHhHHhccCCc-hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566677778888888 4666677777777777777776655
No 71
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=22.98 E-value=1.2e+02 Score=22.47 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 036565 99 IALLQRKMIELQQDLAVARARLARY 123 (180)
Q Consensus 99 I~~Lq~qi~~lq~eLa~~~~~La~~ 123 (180)
|..|+.+..+|+.+|..+.++|..-
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~ 26 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQN 26 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777653
No 72
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=22.83 E-value=2.7e+02 Score=28.20 Aligned_cols=60 Identities=15% Similarity=0.212 Sum_probs=48.3
Q ss_pred cCCC--ccchhHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccc
Q 036565 67 EVPE--EQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTPAASS 130 (180)
Q Consensus 67 ~lp~--~~R~~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eLa~~~~~La~~~~~~~~~ 130 (180)
+||+ ..+-.+|.-++++|. +=-|.|-.++.+|...|..++.|+..++.+=+.+...++.+
T Consensus 247 dlp~~~~~k~~~M~~~l~~ak----~~~~d~~~~~~KLraml~~~Ee~~~~~k~qs~~l~qlaa~t 308 (657)
T PLN02910 247 ELHSSALDQAKAMGHVLSIAK----DQLYDCHTMARKLRAMLQSTERKVDALKKKSAFLIQLAAKT 308 (657)
T ss_pred ccCchHHHHHHHHHHHHHHHH----hcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4454 446678888888775 45588999999999999999999999999888777666655
No 73
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=22.67 E-value=1.4e+02 Score=22.87 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036565 99 IALLQRKMIELQQDLAVARARLA 121 (180)
Q Consensus 99 I~~Lq~qi~~lq~eLa~~~~~La 121 (180)
++.|..||+.||++|..+....+
T Consensus 4 ~s~I~~eIekLqe~lk~~e~kea 26 (92)
T PF07820_consen 4 SSKIREEIEKLQEQLKQAETKEA 26 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888877765544
No 74
>smart00338 BRLZ basic region leucin zipper.
Probab=22.60 E-value=2.1e+02 Score=19.25 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036565 96 IGAIALLQRKMIELQQDLAVARARLARY 123 (180)
Q Consensus 96 ~G~I~~Lq~qi~~lq~eLa~~~~~La~~ 123 (180)
-+-+..|..+...|+.++..++.++..+
T Consensus 32 e~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 32 ERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555543
No 75
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=22.41 E-value=1.9e+02 Score=21.72 Aligned_cols=30 Identities=30% Similarity=0.439 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 036565 97 GAIALLQRKMIELQQDLAVARARLARYTTP 126 (180)
Q Consensus 97 G~I~~Lq~qi~~lq~eLa~~~~~La~~~~~ 126 (180)
..+..|+++++.+++++..+...+..+...
T Consensus 6 ~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~ 35 (126)
T TIGR00293 6 AELQILQQQVESLQAQIAALRALIAELETA 35 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777766544
No 76
>PRK01203 prefoldin subunit alpha; Provisional
Probab=22.39 E-value=1.5e+02 Score=23.90 Aligned_cols=27 Identities=4% Similarity=0.170 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036565 98 AIALLQRKMIELQQDLAVARARLARYT 124 (180)
Q Consensus 98 ~I~~Lq~qi~~lq~eLa~~~~~La~~~ 124 (180)
-+..|++|++.+++|+..++..+..+.
T Consensus 8 ~~~~~~~q~e~l~~ql~~L~~a~se~~ 34 (130)
T PRK01203 8 QLNYIESLISSVDSQIDSLNKTLSEVQ 34 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777776666653
No 77
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.15 E-value=1.3e+02 Score=26.79 Aligned_cols=41 Identities=22% Similarity=0.244 Sum_probs=29.9
Q ss_pred HHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036565 82 YEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYT 124 (180)
Q Consensus 82 YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eLa~~~~~La~~~ 124 (180)
+|-..|.+|+ =-.-.+..+|++..+|++|.....+.++.++
T Consensus 44 ~~~~~~~r~~--~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 44 GESVRRARDL--DLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred Ccchhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555 3467788888888888888888888888877
No 78
>PTZ00464 SNF-7-like protein; Provisional
Probab=21.96 E-value=2.9e+02 Score=23.66 Aligned_cols=29 Identities=10% Similarity=0.307 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 036565 97 GAIALLQRKMIELQQDLAVARARLARYTT 125 (180)
Q Consensus 97 G~I~~Lq~qi~~lq~eLa~~~~~La~~~~ 125 (180)
..+..|+.+|..+..|++.++..+...+.
T Consensus 25 ~r~~~l~kKi~~ld~E~~~ak~~~k~~~~ 53 (211)
T PTZ00464 25 GRSEVVDARINKIDAELMKLKEQIQRTRG 53 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45667888888888888888887765544
No 79
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=21.79 E-value=2e+02 Score=21.72 Aligned_cols=28 Identities=36% Similarity=0.540 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 036565 98 AIALLQRKMIELQQDLAVARARLARYTT 125 (180)
Q Consensus 98 ~I~~Lq~qi~~lq~eLa~~~~~La~~~~ 125 (180)
.+..|+.+++.+++++..++..+..|..
T Consensus 7 ~~~~l~~~i~~l~~~~~~l~~~~~e~~~ 34 (129)
T cd00584 7 QLQVLQQEIEELQQELARLNEAIAEYEQ 34 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777766666643
No 80
>PF00172 Zn_clus: Fungal Zn(2)-Cys(6) binuclear cluster domain; InterPro: IPR001138 The N-terminal region of a number of fungal transcriptional regulatory proteins contains a Cys-rich motif that is involved in zinc-dependent binding of DNA. The region forms a binuclear Zn cluster, in which two Zn atoms are bound by six Cys residues [, ]. A wide range of proteins are known to contain this domain. These include the proteins involved in arginine, proline, pyrimidine, quinate, maltose and galactose metabolism; amide and GABA catabolism; leucine biosynthesis, amongst others.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1AJY_A 1ZME_C 2VEQ_A 1CLD_A 1PYI_B 1D66_A 3COQ_A 1AW6_A 2ER8_A 2ERE_A ....
Probab=21.78 E-value=59 Score=20.24 Aligned_cols=15 Identities=33% Similarity=0.707 Sum_probs=10.3
Q ss_pred CCcHHhHHhhhcCCC
Q 036565 19 SSCAACKLLKRKCIP 33 (180)
Q Consensus 19 ~~CAACK~lRRkC~~ 33 (180)
.+|..|+..+.+|..
T Consensus 1 ~aC~~Cr~rK~kCd~ 15 (40)
T PF00172_consen 1 RACDRCRRRKVKCDG 15 (40)
T ss_dssp -SBHHHHHHTS--ST
T ss_pred CcChHHHhhCcCcCC
Confidence 378899999988886
No 81
>PRK14625 hypothetical protein; Provisional
Probab=21.56 E-value=1.5e+02 Score=23.09 Aligned_cols=26 Identities=42% Similarity=0.438 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036565 99 IALLQRKMIELQQDLAVARARLARYT 124 (180)
Q Consensus 99 I~~Lq~qi~~lq~eLa~~~~~La~~~ 124 (180)
+..+.+|.+++|+++..++++|+...
T Consensus 4 m~~mmkqaq~mQ~km~~~Q~el~~~~ 29 (109)
T PRK14625 4 LGGLMKQAQAMQQKLADAQARLAETT 29 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccE
Confidence 66788889999999999999999754
No 82
>PF14071 YlbD_coat: Putative coat protein
Probab=21.51 E-value=2e+02 Score=23.15 Aligned_cols=31 Identities=10% Similarity=0.262 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCccc
Q 036565 100 ALLQRKMIELQQDLAVARARLARYTTPAASS 130 (180)
Q Consensus 100 ~~Lq~qi~~lq~eLa~~~~~La~~~~~~~~~ 130 (180)
..||.+|..++.-|..++.-|..+.+.....
T Consensus 80 nq~q~hl~~~sqai~~vQ~~l~qFq~~~~~~ 110 (124)
T PF14071_consen 80 NQMQKHLNNVSQAIGSVQQVLSQFQGNGQKQ 110 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 4589999999999999999999988776554
No 83
>PRK14127 cell division protein GpsB; Provisional
Probab=21.35 E-value=1.9e+02 Score=22.63 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 036565 98 AIALLQRKMIELQQDLAVARARLAR 122 (180)
Q Consensus 98 ~I~~Lq~qi~~lq~eLa~~~~~La~ 122 (180)
.+..|+.++..++.+|+..+.++..
T Consensus 45 e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 45 EIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444555555555555555544443
No 84
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=21.13 E-value=1.4e+02 Score=23.55 Aligned_cols=25 Identities=16% Similarity=0.482 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHH--------HHHHhhhC
Q 036565 101 LLQRKMIELQQDLAVAR--------ARLARYTT 125 (180)
Q Consensus 101 ~Lq~qi~~lq~eLa~~~--------~~La~~~~ 125 (180)
+++..|.+|+.||..++ .+|..|..
T Consensus 4 QmElrIkdLeselsk~Ktsq~d~~~~eLEkYkq 36 (111)
T PF12001_consen 4 QMELRIKDLESELSKMKTSQEDSNKTELEKYKQ 36 (111)
T ss_pred HHHHHHHHHHHHHHHhHhHhhhhhHHHHHHHHH
Confidence 45556666666666666 56666654
No 85
>PRK14626 hypothetical protein; Provisional
Probab=20.92 E-value=1.7e+02 Score=22.63 Aligned_cols=28 Identities=21% Similarity=0.427 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036565 97 GAIALLQRKMIELQQDLAVARARLARYT 124 (180)
Q Consensus 97 G~I~~Lq~qi~~lq~eLa~~~~~La~~~ 124 (180)
|=+..+-.|.+++|+++..++++|+.-.
T Consensus 5 gn~~~mmkqaq~mQ~km~~~qeeL~~~~ 32 (110)
T PRK14626 5 GNLAELMKQMQSIKENVEKAKEELKKEE 32 (110)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhccE
Confidence 4477788889999999999999999754
No 86
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=20.64 E-value=1.7e+02 Score=23.43 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036565 98 AIALLQRKMIELQQDLAVARARLARYT 124 (180)
Q Consensus 98 ~I~~Lq~qi~~lq~eLa~~~~~La~~~ 124 (180)
-|..|+.++..++.+|..+..+|....
T Consensus 36 EI~sL~~K~~~lE~eld~~~~~l~~~k 62 (143)
T PF12718_consen 36 EITSLQKKNQQLEEELDKLEEQLKEAK 62 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888888877777654
No 87
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=20.60 E-value=1.3e+02 Score=27.69 Aligned_cols=36 Identities=14% Similarity=0.307 Sum_probs=30.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 036565 92 VYGCIGAIALLQRKMIELQQDLAVARARLARYTTPA 127 (180)
Q Consensus 92 VyGc~G~I~~Lq~qi~~lq~eLa~~~~~La~~~~~~ 127 (180)
|.|..--..+|+.+|.++|+|+..++..|..|...-
T Consensus 191 IDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~l 226 (319)
T PF09789_consen 191 IDALIMENRYLKERLKQLQEEKELLKQTINKYKSAL 226 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555568899999999999999999999998654
No 88
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=20.52 E-value=2.6e+02 Score=18.39 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 036565 99 IALLQRKMIELQQDLAVARARLARY 123 (180)
Q Consensus 99 I~~Lq~qi~~lq~eLa~~~~~La~~ 123 (180)
+..|+.++..|+.+...++.+++..
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666543
No 89
>PRK14623 hypothetical protein; Provisional
Probab=20.39 E-value=1.6e+02 Score=22.74 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036565 99 IALLQRKMIELQQDLAVARARLARYT 124 (180)
Q Consensus 99 I~~Lq~qi~~lq~eLa~~~~~La~~~ 124 (180)
+..+..|.+++|.++..++++|+.-.
T Consensus 3 ~~~~mkqaqkmQ~km~~~Qeel~~~~ 28 (106)
T PRK14623 3 MMGMMGKLKEAQQKVEATKKRLDTVL 28 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccE
Confidence 66788889999999999999999754
Done!