Query 036565
Match_columns 180
No_of_seqs 143 out of 316
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 04:43:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036565.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036565hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2er8_A Regulatory protein Leu3 81.8 2.9 9.8E-05 27.6 5.1 18 17-34 2-19 (72)
2 4dzn_A Coiled-coil peptide CC- 79.9 2.5 8.5E-05 25.6 3.7 27 97-123 2-28 (33)
3 2ke4_A CDC42-interacting prote 68.3 9.6 0.00033 28.0 5.2 42 81-123 47-88 (98)
4 1zme_C Proline utilization tra 61.3 8.4 0.00029 25.0 3.5 26 96-121 43-68 (70)
5 3nmd_A CGMP dependent protein 53.4 25 0.00085 24.8 4.9 30 97-126 40-69 (72)
6 1am9_A Srebp-1A, protein (ster 50.7 24 0.00083 24.5 4.6 29 96-124 49-77 (82)
7 2yy0_A C-MYC-binding protein; 50.3 18 0.00063 23.7 3.6 24 99-122 28-51 (53)
8 2zvf_A Alanyl-tRNA synthetase; 49.2 54 0.0018 24.6 6.7 47 78-124 13-59 (171)
9 3r4h_A Coiled coil helix CC-TE 48.8 27 0.00092 21.1 3.9 29 97-125 2-30 (34)
10 1hlo_A Protein (transcription 43.4 24 0.00084 24.2 3.6 25 95-119 55-79 (80)
11 1nkp_B MAX protein, MYC proto- 43.4 39 0.0013 23.2 4.7 28 96-123 46-73 (83)
12 3myf_A Sensor protein; HPT, hi 43.3 67 0.0023 23.3 6.2 64 48-119 52-115 (119)
13 1zxa_A CGMP-dependent protein 43.1 34 0.0012 23.7 4.3 33 98-130 26-58 (67)
14 2xdj_A Uncharacterized protein 42.7 31 0.0011 24.6 4.1 25 98-122 21-45 (83)
15 4e61_A Protein BIM1; EB1-like 42.4 38 0.0013 25.5 4.8 32 94-125 1-32 (106)
16 1uuj_A Platelet-activating fac 42.1 11 0.00037 27.5 1.6 24 99-122 60-83 (88)
17 2l5g_B Putative uncharacterize 40.0 39 0.0013 21.6 3.8 23 102-124 7-29 (42)
18 3kin_B Kinesin heavy chain; mo 39.3 32 0.0011 25.5 4.0 72 53-124 34-116 (117)
19 3ra3_B P2F; coiled coil domain 39.1 35 0.0012 19.8 3.2 24 99-122 2-25 (28)
20 2wt7_B Transcription factor MA 38.1 35 0.0012 24.8 3.9 53 72-124 28-82 (90)
21 2wg5_A General control protein 37.7 40 0.0014 24.7 4.2 32 99-130 9-40 (109)
22 3pbf_A Pulmonary surfactant-as 37.2 25 0.00086 25.2 3.0 24 98-121 3-26 (148)
23 2dgc_A Protein (GCN4); basic d 35.2 62 0.0021 21.6 4.5 29 97-125 30-58 (63)
24 3twe_A Alpha4H; unknown functi 34.4 51 0.0018 19.0 3.4 22 100-121 4-25 (27)
25 1gk6_A Vimentin; intermediate 34.3 28 0.00095 23.0 2.6 22 101-122 4-25 (59)
26 1ic2_A Tropomyosin alpha chain 33.0 52 0.0018 22.7 4.0 46 73-122 21-66 (81)
27 1dh3_A Transcription factor CR 32.7 74 0.0025 20.7 4.5 29 97-125 22-50 (55)
28 1rtm_1 Mannose-binding protein 31.3 46 0.0016 24.0 3.6 21 99-119 6-26 (149)
29 3u1c_A Tropomyosin alpha-1 cha 30.3 57 0.002 23.5 4.0 29 95-123 42-70 (101)
30 1x8y_A Lamin A/C; structural p 30.2 65 0.0022 22.6 4.1 38 78-122 16-53 (86)
31 1buu_A Protein (mannose-bindin 28.9 40 0.0014 25.1 3.0 23 96-118 22-44 (168)
32 1gk4_A Vimentin; intermediate 28.9 71 0.0024 22.2 4.1 39 77-122 13-51 (84)
33 2qdq_A Talin-1; dimerisation d 28.6 98 0.0033 20.4 4.4 23 103-125 14-36 (50)
34 2k48_A Nucleoprotein; viral pr 28.3 74 0.0025 24.0 4.3 27 96-122 34-60 (107)
35 1f4s_P Ethanol regulon transcr 28.1 41 0.0014 22.0 2.6 24 10-33 3-26 (65)
36 1a93_B MAX protein, coiled coi 27.9 86 0.0029 19.2 3.8 23 99-121 9-31 (34)
37 3viq_B Mating-type switching p 26.6 35 0.0012 24.7 2.2 23 101-123 5-27 (85)
38 3kqg_A Langerin, C-type lectin 26.4 92 0.0031 23.0 4.6 25 97-121 16-40 (182)
39 3trt_A Vimentin; cytoskeleton, 25.6 63 0.0022 21.6 3.3 20 98-117 57-76 (77)
40 1jcd_A Major outer membrane li 25.6 98 0.0033 20.3 4.1 21 100-120 14-34 (52)
41 3q0x_A Centriole protein; cent 25.1 40 0.0014 28.2 2.6 33 98-130 179-211 (228)
42 2xv5_A Lamin-A/C; structural p 24.6 1.3E+02 0.0043 20.9 4.7 21 101-121 9-29 (74)
43 3i00_A HIP-I, huntingtin-inter 24.4 75 0.0026 24.0 3.8 21 97-117 40-60 (120)
44 2ic6_A Nucleocapsid protein; h 23.9 92 0.0032 22.2 4.0 27 96-122 4-30 (78)
45 2pbi_A Regulator of G-protein 23.6 61 0.0021 29.1 3.7 68 46-113 143-235 (424)
46 2ic9_A Nucleocapsid protein; h 23.1 93 0.0032 23.0 4.0 26 97-122 5-30 (96)
47 2z5i_A TM, general control pro 22.8 1.2E+02 0.0043 19.5 4.2 27 97-123 12-38 (52)
48 3mov_A Lamin-B1; LMNB1, B-type 22.5 1E+02 0.0035 22.2 4.1 41 75-122 22-62 (95)
49 3azd_A Short alpha-tropomyosin 22.5 33 0.0011 20.9 1.2 26 98-123 5-30 (37)
50 1t2k_D Cyclic-AMP-dependent tr 22.4 97 0.0033 20.1 3.6 10 104-113 43-52 (61)
51 3qh9_A Liprin-beta-2; coiled-c 22.2 84 0.0029 22.6 3.5 26 97-122 54-79 (81)
52 4fi5_A Nucleoprotein; structur 21.7 99 0.0034 23.5 4.0 24 99-122 24-47 (113)
53 1urf_A Protein kinase C-like 1 21.6 2.3E+02 0.0078 20.3 5.9 20 55-74 24-43 (81)
54 2k48_A Nucleoprotein; viral pr 21.6 1E+02 0.0035 23.2 4.0 22 97-118 82-103 (107)
55 2ic6_A Nucleocapsid protein; h 21.4 1.1E+02 0.0038 21.8 4.0 23 96-118 51-73 (78)
56 1rtm_1 Mannose-binding protein 20.9 1E+02 0.0034 22.1 3.8 25 102-126 2-26 (149)
57 1buu_A Protein (mannose-bindin 20.7 1E+02 0.0036 22.7 4.0 31 95-125 14-44 (168)
58 3tnu_B Keratin, type II cytosk 20.7 1.1E+02 0.0038 22.6 4.1 40 76-122 61-100 (129)
59 2wt7_A Proto-oncogene protein 20.4 1.4E+02 0.0049 19.5 4.2 23 99-121 25-47 (63)
No 1
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=81.82 E-value=2.9 Score=27.59 Aligned_cols=18 Identities=28% Similarity=0.643 Sum_probs=13.2
Q ss_pred CCCCcHHhHHhhhcCCCC
Q 036565 17 SSSSCAACKLLKRKCIPT 34 (180)
Q Consensus 17 ~~~~CAACK~lRRkC~~~ 34 (180)
...+|..|+..+-||...
T Consensus 2 ~~~AC~~Cr~rK~kCd~~ 19 (72)
T 2er8_A 2 RKFACVECRQQKSKCDAH 19 (72)
T ss_dssp CCCCCHHHHHTTCCCCSG
T ss_pred cCchhHHHHhcccCCCCC
Confidence 356788888888888653
No 2
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=79.87 E-value=2.5 Score=25.57 Aligned_cols=27 Identities=26% Similarity=0.506 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036565 97 GAIALLQRKMIELQQDLAVARARLARY 123 (180)
Q Consensus 97 G~I~~Lq~qi~~lq~eLa~~~~~La~~ 123 (180)
|.|..|+++|..++.|++.++-+|+..
T Consensus 2 geiaalkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 2 GEIAALKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999988864
No 3
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=68.27 E-value=9.6 Score=27.99 Aligned_cols=42 Identities=24% Similarity=0.245 Sum_probs=29.0
Q ss_pred HHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036565 81 AYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARY 123 (180)
Q Consensus 81 ~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eLa~~~~~La~~ 123 (180)
+|+.+-=.-||-. +.+-|...-..|+.|+++|...+..|+..
T Consensus 47 vY~~nP~~GD~~s-~~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 47 VYEKTPQMGDPAS-LEPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp HHHHCGGGCCGGG-SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCccCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555533 46777788888888888888888877754
No 4
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=61.33 E-value=8.4 Score=24.96 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036565 96 IGAIALLQRKMIELQQDLAVARARLA 121 (180)
Q Consensus 96 ~G~I~~Lq~qi~~lq~eLa~~~~~La 121 (180)
-+.|..|+.+|..|+.+|+.+++.|+
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35688999999999999999888765
No 5
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=53.36 E-value=25 Score=24.83 Aligned_cols=30 Identities=13% Similarity=0.228 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 036565 97 GAIALLQRKMIELQQDLAVARARLARYTTP 126 (180)
Q Consensus 97 G~I~~Lq~qi~~lq~eLa~~~~~La~~~~~ 126 (180)
..|..|+.+|.+...++...+.+|-.|+..
T Consensus 40 ~~I~eLEk~L~ekd~eI~~LqseLDKfrSV 69 (72)
T 3nmd_A 40 ALIDELELELDQKDELIQMLQNELDKYRSV 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 568899999999999999999999988653
No 6
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=50.67 E-value=24 Score=24.50 Aligned_cols=29 Identities=24% Similarity=0.265 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036565 96 IGAIALLQRKMIELQQDLAVARARLARYT 124 (180)
Q Consensus 96 ~G~I~~Lq~qi~~lq~eLa~~~~~La~~~ 124 (180)
+-.|..||.++..++.|+..++.++....
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 67899999999999999999999887643
No 7
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=50.29 E-value=18 Score=23.70 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 036565 99 IALLQRKMIELQQDLAVARARLAR 122 (180)
Q Consensus 99 I~~Lq~qi~~lq~eLa~~~~~La~ 122 (180)
...|+.+++.|+++++.++++|..
T Consensus 28 ~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 28 LAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556666666666666666554
No 8
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=49.18 E-value=54 Score=24.63 Aligned_cols=47 Identities=13% Similarity=0.078 Sum_probs=33.8
Q ss_pred HHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036565 78 NSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYT 124 (180)
Q Consensus 78 ~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eLa~~~~~La~~~ 124 (180)
..++-+......-|..-....|..|+.++.+++.|++.++.+++.+.
T Consensus 13 ~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 13 ERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp HHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555544456677888899999999999999998888764
No 9
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=48.78 E-value=27 Score=21.13 Aligned_cols=29 Identities=21% Similarity=0.458 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 036565 97 GAIALLQRKMIELQQDLAVARARLARYTT 125 (180)
Q Consensus 97 G~I~~Lq~qi~~lq~eLa~~~~~La~~~~ 125 (180)
|.+...++++..++.||+..+-+|+.+..
T Consensus 2 gelaaikqelaaikkelaaikfelaaikq 30 (34)
T 3r4h_A 2 GELAAIKQELAAIKKELAAIKFELAAIKQ 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44566778888888889888888887654
No 10
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=43.43 E-value=24 Score=24.16 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 036565 95 CIGAIALLQRKMIELQQDLAVARAR 119 (180)
Q Consensus 95 c~G~I~~Lq~qi~~lq~eLa~~~~~ 119 (180)
.+-.|..|++++..++.++..++.+
T Consensus 55 Ai~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 55 ATEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3677899999999998888877654
No 11
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=43.42 E-value=39 Score=23.16 Aligned_cols=28 Identities=25% Similarity=0.184 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036565 96 IGAIALLQRKMIELQQDLAVARARLARY 123 (180)
Q Consensus 96 ~G~I~~Lq~qi~~lq~eLa~~~~~La~~ 123 (180)
+-.|..|+.++..++.++..++.+....
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L 73 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALL 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678899988888877777777666544
No 12
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=43.32 E-value=67 Score=23.31 Aligned_cols=64 Identities=16% Similarity=0.185 Sum_probs=40.7
Q ss_pred HHHHHHHhhccchHHHHhhcCCCccchhHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 036565 48 KFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARAR 119 (180)
Q Consensus 48 ~F~~vhkvFG~snv~k~L~~lp~~~R~~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eLa~~~~~ 119 (180)
-...+||+-|++..+..- .-..-+...|..+|..+|+-..-..+..|..+|..+..++....++
T Consensus 52 l~~~aHkLkGaa~~~Ga~--------~L~~~~~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~~l~~ 115 (119)
T 3myf_A 52 MLSTIHKLHGASCYCGVP--------TTQRLCQEIESALKRQTPVEDLEPEILELLDELTKVESAVKQVLSQ 115 (119)
T ss_dssp HHHHHHHHHHHHTTTTCH--------HHHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHH--------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344578888876644321 1112233457777888887777777888888887776666655554
No 13
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=43.07 E-value=34 Score=23.70 Aligned_cols=33 Identities=12% Similarity=0.282 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccc
Q 036565 98 AIALLQRKMIELQQDLAVARARLARYTTPAASS 130 (180)
Q Consensus 98 ~I~~Lq~qi~~lq~eLa~~~~~La~~~~~~~~~ 130 (180)
.|..|+..+++...++..++.+|-.|+..-.++
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~~~ 58 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLHKCQSVLPVP 58 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 578899999999999999999999998766543
No 14
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=42.71 E-value=31 Score=24.58 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 036565 98 AIALLQRKMIELQQDLAVARARLAR 122 (180)
Q Consensus 98 ~I~~Lq~qi~~lq~eLa~~~~~La~ 122 (180)
.+..|++||+.++.|++.++.++..
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~ 45 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQE 45 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4566777777777777777666553
No 15
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=42.40 E-value=38 Score=25.45 Aligned_cols=32 Identities=16% Similarity=0.422 Sum_probs=24.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 036565 94 GCIGAIALLQRKMIELQQDLAVARARLARYTT 125 (180)
Q Consensus 94 Gc~G~I~~Lq~qi~~lq~eLa~~~~~La~~~~ 125 (180)
|..|.+..||.++.+.+++++..++++..+..
T Consensus 1 ~~~~s~~al~~eL~~~~~ei~~L~~ei~eLk~ 32 (106)
T 4e61_A 1 GPLGSLVAIQAELTKSQETIGSLNEEIEQYKG 32 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888887777776543
No 16
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=42.13 E-value=11 Score=27.54 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 036565 99 IALLQRKMIELQQDLAVARARLAR 122 (180)
Q Consensus 99 I~~Lq~qi~~lq~eLa~~~~~La~ 122 (180)
|-.||.+|.+|+++++.++++|..
T Consensus 60 ViRLQKKImdLE~~~~~l~~el~~ 83 (88)
T 1uuj_A 60 VIRLQKKVMELESKLNEAKEEFTS 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456999999999999999999875
No 17
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=40.00 E-value=39 Score=21.65 Aligned_cols=23 Identities=9% Similarity=0.374 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 036565 102 LQRKMIELQQDLAVARARLARYT 124 (180)
Q Consensus 102 Lq~qi~~lq~eLa~~~~~La~~~ 124 (180)
|-++|..+-.|++.++++|..++
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lq 29 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLK 29 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888887765
No 18
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=39.32 E-value=32 Score=25.49 Aligned_cols=72 Identities=13% Similarity=0.125 Sum_probs=43.0
Q ss_pred HHhhccchHHHHhhcCCCc--cchhHHHHHHHHHhhhc------cCCCcchHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 036565 53 HKVFGASNVSKILTEVPEE--QREDTVNSLAYEAEARL------RDPVYGCIGAIA---LLQRKMIELQQDLAVARARLA 121 (180)
Q Consensus 53 hkvFG~snv~k~L~~lp~~--~R~~a~~SL~YEA~aR~------rDPVyGc~G~I~---~Lq~qi~~lq~eLa~~~~~La 121 (180)
.-.||...-+-|+-.+.|. .-+++++||-|-+.++. .+-...-.-++. ....+++.++.++...+.||.
T Consensus 34 ~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~~~~~~~l~~~~~~e~~~~~~L~~~i~~Le~el~ 113 (117)
T 3kin_B 34 QDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKNKALKSVIQHLEVELN 113 (117)
T ss_dssp HHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344544444455556554 45799999999998875 111122223333 344455666777777778887
Q ss_pred hhh
Q 036565 122 RYT 124 (180)
Q Consensus 122 ~~~ 124 (180)
++|
T Consensus 114 ~~R 116 (117)
T 3kin_B 114 RWR 116 (117)
T ss_dssp HHT
T ss_pred Hhh
Confidence 765
No 19
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=39.10 E-value=35 Score=19.80 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 036565 99 IALLQRKMIELQQDLAVARARLAR 122 (180)
Q Consensus 99 I~~Lq~qi~~lq~eLa~~~~~La~ 122 (180)
|..|+++-..+++|++.+.-+|+.
T Consensus 2 irrlkqknarlkqeiaaleyeiaa 25 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAA 25 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHH
Confidence 567888888888888888888875
No 20
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=38.11 E-value=35 Score=24.84 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=34.6
Q ss_pred cchhHHHHHHHHHhhhcc--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036565 72 QREDTVNSLAYEAEARLR--DPVYGCIGAIALLQRKMIELQQDLAVARARLARYT 124 (180)
Q Consensus 72 ~R~~a~~SL~YEA~aR~r--DPVyGc~G~I~~Lq~qi~~lq~eLa~~~~~La~~~ 124 (180)
+|.-+..-=.|-+++|.+ +=+..--.-+..|+.+++.+..|++.++.++..|+
T Consensus 28 q~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k 82 (90)
T 2wt7_B 28 QKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYK 82 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777899999873 44444455566666667777777766666666554
No 21
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=37.70 E-value=40 Score=24.65 Aligned_cols=32 Identities=22% Similarity=0.216 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCCccc
Q 036565 99 IALLQRKMIELQQDLAVARARLARYTTPAASS 130 (180)
Q Consensus 99 I~~Lq~qi~~lq~eLa~~~~~La~~~~~~~~~ 130 (180)
..+|+.++.+++.|+..++.+|...+.+...-
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~~P~~V 40 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRSPPLLV 40 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCceE
Confidence 45799999999999999999999988775433
No 22
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=37.17 E-value=25 Score=25.16 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036565 98 AIALLQRKMIELQQDLAVARARLA 121 (180)
Q Consensus 98 ~I~~Lq~qi~~lq~eLa~~~~~La 121 (180)
++..|++++..++.+|..++..|.
T Consensus 3 ~~e~l~~~~~~l~~~l~~~~~~~~ 26 (148)
T 3pbf_A 3 LDEELQTELYEIKHQILQTMGVLS 26 (148)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999998884
No 23
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=35.22 E-value=62 Score=21.62 Aligned_cols=29 Identities=21% Similarity=0.166 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 036565 97 GAIALLQRKMIELQQDLAVARARLARYTT 125 (180)
Q Consensus 97 G~I~~Lq~qi~~lq~eLa~~~~~La~~~~ 125 (180)
..|..|+.++..|+.+...+++++...+.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788889999988888888888877653
No 24
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=34.44 E-value=51 Score=18.97 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 036565 100 ALLQRKMIELQQDLAVARARLA 121 (180)
Q Consensus 100 ~~Lq~qi~~lq~eLa~~~~~La 121 (180)
-.|..+++.+|+.|..++..|.
T Consensus 4 delykeledlqerlrklrkklr 25 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4577888899999988888775
No 25
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=34.33 E-value=28 Score=23.00 Aligned_cols=22 Identities=27% Similarity=0.208 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 036565 101 LLQRKMIELQQDLAVARARLAR 122 (180)
Q Consensus 101 ~Lq~qi~~lq~eLa~~~~~La~ 122 (180)
.+|.+|..++++|..++++++.
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~ 25 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVAR 25 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555443
No 26
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=32.97 E-value=52 Score=22.67 Aligned_cols=46 Identities=20% Similarity=0.185 Sum_probs=29.1
Q ss_pred chhHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036565 73 REDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLAR 122 (180)
Q Consensus 73 R~~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eLa~~~~~La~ 122 (180)
|.+.+..-+=+++.|. --.-.-|..|+.+|..++.+|..+...|..
T Consensus 21 ~~~~~e~~l~~~e~~~----~~~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 21 RAEQAEADKKAAEERS----KQLEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444554443 123356777888888888888888777764
No 27
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=32.69 E-value=74 Score=20.67 Aligned_cols=29 Identities=10% Similarity=0.106 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 036565 97 GAIALLQRKMIELQQDLAVARARLARYTT 125 (180)
Q Consensus 97 G~I~~Lq~qi~~lq~eLa~~~~~La~~~~ 125 (180)
..|..|+.++..|+.|...++.++.....
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778899999999999999888886543
No 28
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=31.31 E-value=46 Score=23.97 Aligned_cols=21 Identities=14% Similarity=0.275 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 036565 99 IALLQRKMIELQQDLAVARAR 119 (180)
Q Consensus 99 I~~Lq~qi~~lq~eLa~~~~~ 119 (180)
|..|+.+++.||.+|...+..
T Consensus 6 l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 6 LANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 555666666666666666554
No 29
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=30.25 E-value=57 Score=23.50 Aligned_cols=29 Identities=10% Similarity=0.078 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036565 95 CIGAIALLQRKMIELQQDLAVARARLARY 123 (180)
Q Consensus 95 c~G~I~~Lq~qi~~lq~eLa~~~~~La~~ 123 (180)
.-.-|..|+.+|..++.+|..++..|...
T Consensus 42 ~E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 42 LEDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888888887753
No 30
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=30.16 E-value=65 Score=22.57 Aligned_cols=38 Identities=21% Similarity=0.263 Sum_probs=22.5
Q ss_pred HHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036565 78 NSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLAR 122 (180)
Q Consensus 78 ~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eLa~~~~~La~ 122 (180)
..-+-|++.|.. .-+..+|.+|..++++|..++++++.
T Consensus 16 e~~l~e~E~~~~-------~~l~~~q~~i~~lE~el~~~r~e~~~ 53 (86)
T 1x8y_A 16 EAKLRDLEDSLA-------RERDTSRRLLAEKEREMAEMRARMQQ 53 (86)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456666532 34556666666667777666666654
No 31
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=28.92 E-value=40 Score=25.07 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036565 96 IGAIALLQRKMIELQQDLAVARA 118 (180)
Q Consensus 96 ~G~I~~Lq~qi~~lq~eLa~~~~ 118 (180)
-..|..|+.+|..|+.+|..+++
T Consensus 22 ~~~l~~L~~~~~~L~~~l~~l~~ 44 (168)
T 1buu_A 22 EVKLANMEAEINTLKSKLELTNK 44 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34466666777777777766665
No 32
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=28.89 E-value=71 Score=22.17 Aligned_cols=39 Identities=21% Similarity=0.226 Sum_probs=20.9
Q ss_pred HHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036565 77 VNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLAR 122 (180)
Q Consensus 77 ~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eLa~~~~~La~ 122 (180)
...-+-|++.|... -+..+|.+|..++++|..++.+++.
T Consensus 13 LE~~l~e~e~~~~~-------~~~~~q~~i~~lE~eL~~~r~e~~~ 51 (84)
T 1gk4_A 13 LERQMREMEENFAV-------EAANYQDTIGRLQDEIQNMKEEMAR 51 (84)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566655433 3455556666666666666655553
No 33
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=28.61 E-value=98 Score=20.41 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhC
Q 036565 103 QRKMIELQQDLAVARARLARYTT 125 (180)
Q Consensus 103 q~qi~~lq~eLa~~~~~La~~~~ 125 (180)
|..|=..+.||..|+..|+..+.
T Consensus 14 qe~iLr~ErELEeAr~~La~iR~ 36 (50)
T 2qdq_A 14 QEEMLRKERELEEARKKLAQIRQ 36 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555667788888888876653
No 34
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=28.29 E-value=74 Score=24.02 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036565 96 IGAIALLQRKMIELQQDLAVARARLAR 122 (180)
Q Consensus 96 ~G~I~~Lq~qi~~lq~eLa~~~~~La~ 122 (180)
.+-|..||..|...+.||..++..|..
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkd 60 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKD 60 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999985
No 35
>1f4s_P Ethanol regulon transcriptional factor; protein-DNA complex, zinc binuclear cluster protein, transcription/DNA complex; HET: DNA; NMR {Emericella nidulans} SCOP: g.38.1.1 PDB: 1f5e_P* 2alc_A 3alc_A
Probab=28.11 E-value=41 Score=22.02 Aligned_cols=24 Identities=33% Similarity=0.675 Sum_probs=19.8
Q ss_pred cCCCCCCCCCCcHHhHHhhhcCCC
Q 036565 10 MRGHEPRSSSSCAACKLLKRKCIP 33 (180)
Q Consensus 10 ~~~~~~~~~~~CAACK~lRRkC~~ 33 (180)
|.....+...+|-.|+--+.+|..
T Consensus 3 ~~~~r~r~~~ACd~CR~rK~kCd~ 26 (65)
T 1f4s_P 3 MADTRRRQNHSCDPCRKGKRRCDA 26 (65)
T ss_dssp STTTSCCSSCCCHHHHHHTCCCSC
T ss_pred CCCCCCccCcchHHHhhhhccCCC
Confidence 555566788999999999999976
No 36
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=27.94 E-value=86 Score=19.17 Aligned_cols=23 Identities=13% Similarity=0.156 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036565 99 IALLQRKMIELQQDLAVARARLA 121 (180)
Q Consensus 99 I~~Lq~qi~~lq~eLa~~~~~La 121 (180)
+...|+.|++++.+-+.+..|+.
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHhhHHHHHHHHHHHHHHHH
Confidence 56788889999888888888875
No 37
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=26.57 E-value=35 Score=24.69 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 036565 101 LLQRKMIELQQDLAVARARLARY 123 (180)
Q Consensus 101 ~Lq~qi~~lq~eLa~~~~~La~~ 123 (180)
.|+..|..|+++++.+..+|+.+
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~ 27 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDA 27 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 38
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=26.37 E-value=92 Score=22.98 Aligned_cols=25 Identities=24% Similarity=0.186 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036565 97 GAIALLQRKMIELQQDLAVARARLA 121 (180)
Q Consensus 97 G~I~~Lq~qi~~lq~eLa~~~~~La 121 (180)
..+..|+.+|+++|.+|...++.|.
T Consensus 16 ~~~~~l~~~~~~l~~~l~~~~~~l~ 40 (182)
T 3kqg_A 16 EKASALNTKIRALQGSLENMSKLLK 40 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666665554
No 39
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=25.57 E-value=63 Score=21.63 Aligned_cols=20 Identities=10% Similarity=0.209 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 036565 98 AIALLQRKMIELQQDLAVAR 117 (180)
Q Consensus 98 ~I~~Lq~qi~~lq~eLa~~~ 117 (180)
-|..|.++|+.|+.||..++
T Consensus 57 Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 57 ESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 35666666666666665544
No 40
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=25.57 E-value=98 Score=20.31 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 036565 100 ALLQRKMIELQQDLAVARARL 120 (180)
Q Consensus 100 ~~Lq~qi~~lq~eLa~~~~~L 120 (180)
..|..++.+|+.++..++.++
T Consensus 14 ~~L~~kVdqLssdV~al~~~v 34 (52)
T 1jcd_A 14 QTANAKADQASNDANAARSDA 34 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 41
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=25.12 E-value=40 Score=28.22 Aligned_cols=33 Identities=18% Similarity=0.106 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccc
Q 036565 98 AIALLQRKMIELQQDLAVARARLARYTTPAASS 130 (180)
Q Consensus 98 ~I~~Lq~qi~~lq~eLa~~~~~La~~~~~~~~~ 130 (180)
-...|++.++++++|.++.+++|+.+|...|.+
T Consensus 179 kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~ 211 (228)
T 3q0x_A 179 TCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQL 211 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678889999999999999999888766543
No 42
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=24.61 E-value=1.3e+02 Score=20.87 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 036565 101 LLQRKMIELQQDLAVARARLA 121 (180)
Q Consensus 101 ~Lq~qi~~lq~eLa~~~~~La 121 (180)
.+|.+|..++++|..++++++
T Consensus 9 ~~~~~i~~lE~eL~~~r~e~~ 29 (74)
T 2xv5_A 9 TSRRLLAEKEREMAEMRARMQ 29 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554444443
No 43
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=24.41 E-value=75 Score=23.97 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 036565 97 GAIALLQRKMIELQQDLAVAR 117 (180)
Q Consensus 97 G~I~~Lq~qi~~lq~eLa~~~ 117 (180)
-+|..|+.+|.+|++||+..+
T Consensus 40 ~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 40 RVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888888888764
No 44
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=23.92 E-value=92 Score=22.20 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036565 96 IGAIALLQRKMIELQQDLAVARARLAR 122 (180)
Q Consensus 96 ~G~I~~Lq~qi~~lq~eLa~~~~~La~ 122 (180)
.+-|-.||..|...+.+|..++..|.-
T Consensus 4 M~~l~eLq~e~~~~E~QL~~A~QKLkd 30 (78)
T 2ic6_A 4 MSTLKEVQDNITLHEQRLVTTRQKLKD 30 (78)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888999999999999999999875
No 45
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=23.56 E-value=61 Score=29.11 Aligned_cols=68 Identities=10% Similarity=0.157 Sum_probs=45.9
Q ss_pred hhHHHHHHHhhccchHHHHhh---cCCCccchhHHHHHHHHHh----hhccCCCcchHHH------------------HH
Q 036565 46 PKKFAKVHKVFGASNVSKILT---EVPEEQREDTVNSLAYEAE----ARLRDPVYGCIGA------------------IA 100 (180)
Q Consensus 46 ~~~F~~vhkvFG~snv~k~L~---~lp~~~R~~a~~SL~YEA~----aR~rDPVyGc~G~------------------I~ 100 (180)
.+.++.+||.+...+-.=+++ ++.++.+.+-..-+|.+.+ +++.-|+.||+-+ +.
T Consensus 143 ~e~~~~l~~~~~~~w~~i~~qa~~q~~~~k~r~k~~r~v~~~qe~a~w~vhrp~pg~~~~~e~~~~~~~~~~~~~~~~~~ 222 (424)
T 2pbi_A 143 KENYDFLNKKINYKWDFVIMQAKEQYRTGKERNKADRYALDCQEKAYWLVHRSPPGMNNVLDYGLDRVTNPNEVKKQTVT 222 (424)
T ss_dssp HHHHHHHHHHTGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHSCCTTSCCTTCCCSCBSSCTTCCCCCCHH
T ss_pred HHHHhhhhhhhcCchHHHHHHHHHHHhhhhccchhhhhhhhhhhhhhhhhhCCCCCCccccccccccccCccccccccHH
Confidence 356777888887666655554 4445556667777888777 5679999998743 34
Q ss_pred HHHHHHHHHHHHH
Q 036565 101 LLQRKMIELQQDL 113 (180)
Q Consensus 101 ~Lq~qi~~lq~eL 113 (180)
.++.+|++++.+|
T Consensus 223 ~~r~~veqLk~~l 235 (424)
T 2pbi_A 223 AVRKEIMYYQQAL 235 (424)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5666666666665
No 46
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=23.15 E-value=93 Score=23.03 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036565 97 GAIALLQRKMIELQQDLAVARARLAR 122 (180)
Q Consensus 97 G~I~~Lq~qi~~lq~eLa~~~~~La~ 122 (180)
+-|-.||..|...+.||.+++..|.-
T Consensus 5 ~~i~eLq~e~~~~E~QL~~A~QKLkd 30 (96)
T 2ic9_A 5 STLKEVQDNITLHEQRLVTTRQKLKD 30 (96)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778899999999999999888874
No 47
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=22.83 E-value=1.2e+02 Score=19.51 Aligned_cols=27 Identities=15% Similarity=0.295 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036565 97 GAIALLQRKMIELQQDLAVARARLARY 123 (180)
Q Consensus 97 G~I~~Lq~qi~~lq~eLa~~~~~La~~ 123 (180)
..+.+||..|..|+.+|...+.+-...
T Consensus 12 RsV~KLek~ID~LEdeL~~eKek~~~i 38 (52)
T 2z5i_A 12 NEVARLKKLVDDLEDELYAQKLKYKAI 38 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 457889999999999998887665543
No 48
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=22.50 E-value=1e+02 Score=22.19 Aligned_cols=41 Identities=15% Similarity=0.154 Sum_probs=21.7
Q ss_pred hHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036565 75 DTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLAR 122 (180)
Q Consensus 75 ~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eLa~~~~~La~ 122 (180)
.....-+-|.+.|... -+..+|..|..++++|..++.+++.
T Consensus 22 ~~LE~~l~e~E~~~~~-------e~~~~q~~i~~lE~eL~~~r~e~~~ 62 (95)
T 3mov_A 22 RACLERIQELEDLLAK-------EKDNSRRMLTDKEREMAEIRDQMQQ 62 (95)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666665433 3444555555555555555555543
No 49
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=22.47 E-value=33 Score=20.90 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036565 98 AIALLQRKMIELQQDLAVARARLARY 123 (180)
Q Consensus 98 ~I~~Lq~qi~~lq~eLa~~~~~La~~ 123 (180)
.|..++.+|..++.|+..++.+++..
T Consensus 5 ~i~avKkKiq~lq~q~d~aee~~~~~ 30 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYHLENEVARL 30 (37)
T ss_dssp -CHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777777777777776653
No 50
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=22.43 E-value=97 Score=20.09 Aligned_cols=10 Identities=10% Similarity=0.331 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 036565 104 RKMIELQQDL 113 (180)
Q Consensus 104 ~qi~~lq~eL 113 (180)
.+|..|+.|+
T Consensus 43 ~~i~~L~~e~ 52 (61)
T 1t2k_D 43 SEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 51
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=22.16 E-value=84 Score=22.61 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036565 97 GAIALLQRKMIELQQDLAVARARLAR 122 (180)
Q Consensus 97 G~I~~Lq~qi~~lq~eLa~~~~~La~ 122 (180)
.-|+.||+|+..-.+|+...+.+|.+
T Consensus 54 ~El~~Lq~qLe~kd~ei~rL~~~l~~ 79 (81)
T 3qh9_A 54 AEVAQLQEQVALKDAEIERLHSQLSR 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 45666666666666666666666643
No 52
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=21.73 E-value=99 Score=23.51 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 036565 99 IALLQRKMIELQQDLAVARARLAR 122 (180)
Q Consensus 99 I~~Lq~qi~~lq~eLa~~~~~La~ 122 (180)
|..||..|...+.||.+++..|..
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkd 47 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRD 47 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778999999999999999988875
No 53
>1urf_A Protein kinase C-like 1; transferase, G-protein, HR1 domain, helical, coiled coil, ATP-binding, serine/threonine-protein kinase, phosphorylation; NMR {Homo sapiens} SCOP: a.2.6.1 PDB: 2rmk_B*
Probab=21.61 E-value=2.3e+02 Score=20.30 Aligned_cols=20 Identities=20% Similarity=0.282 Sum_probs=17.1
Q ss_pred hhccchHHHHhhcCCCccch
Q 036565 55 VFGASNVSKILTEVPEEQRE 74 (180)
Q Consensus 55 vFG~snv~k~L~~lp~~~R~ 74 (180)
-=|+.|+++++.+-+..+|.
T Consensus 24 K~GAENmi~~y~~g~~~drK 43 (81)
T 1urf_A 24 KQGAENMIQTYSNGSTKDRK 43 (81)
T ss_dssp HHHHHHHHHHHHHSSSCCHH
T ss_pred HHHHHHHHHHHHcCCchhHH
Confidence 46999999999999887775
No 54
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=21.57 E-value=1e+02 Score=23.23 Aligned_cols=22 Identities=36% Similarity=0.410 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 036565 97 GAIALLQRKMIELQQDLAVARA 118 (180)
Q Consensus 97 G~I~~Lq~qi~~lq~eLa~~~~ 118 (180)
+.|+.||.+|.+++.+|+.+.+
T Consensus 82 ~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 82 AAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777766554
No 55
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=21.44 E-value=1.1e+02 Score=21.77 Aligned_cols=23 Identities=35% Similarity=0.379 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036565 96 IGAIALLQRKMIELQQDLAVARA 118 (180)
Q Consensus 96 ~G~I~~Lq~qi~~lq~eLa~~~~ 118 (180)
-+.|+.||.+|.+++.+|+.+.+
T Consensus 51 ~~~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 51 RAAVSALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677777777777777776554
No 56
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=20.89 E-value=1e+02 Score=22.11 Aligned_cols=25 Identities=8% Similarity=0.290 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCC
Q 036565 102 LQRKMIELQQDLAVARARLARYTTP 126 (180)
Q Consensus 102 Lq~qi~~lq~eLa~~~~~La~~~~~ 126 (180)
|.++|..|+.++..++.+|..+...
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7889999999999999999887754
No 57
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=20.74 E-value=1e+02 Score=22.74 Aligned_cols=31 Identities=10% Similarity=0.228 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 036565 95 CIGAIALLQRKMIELQQDLAVARARLARYTT 125 (180)
Q Consensus 95 c~G~I~~Lq~qi~~lq~eLa~~~~~La~~~~ 125 (180)
--|.-..+..+|+.|+.+|..++.+|..+..
T Consensus 14 ~~g~~~~~~~~l~~L~~~~~~L~~~l~~l~~ 44 (168)
T 1buu_A 14 DRGDSRAIEVKLANMEAEINTLKSKLELTNK 44 (168)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455578888999999999999999998654
No 58
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=20.74 E-value=1.1e+02 Score=22.58 Aligned_cols=40 Identities=28% Similarity=0.321 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036565 76 TVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLAR 122 (180)
Q Consensus 76 a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eLa~~~~~La~ 122 (180)
....-+-|++.|-. .-+..++.+|..++++|..++.+++.
T Consensus 61 ~LE~~l~e~e~~~~-------~~l~~~q~~i~~lE~eL~~~r~e~~~ 100 (129)
T 3tnu_B 61 NLQNAIADAEQRGE-------LALKDARNKLAELEEALQKAKQDMAR 100 (129)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33444556665532 24455666666666666666666554
No 59
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=20.37 E-value=1.4e+02 Score=19.50 Aligned_cols=23 Identities=17% Similarity=0.253 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036565 99 IALLQRKMIELQQDLAVARARLA 121 (180)
Q Consensus 99 I~~Lq~qi~~lq~eLa~~~~~La 121 (180)
|..|+.++..|+.+-..++.+|.
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~ 47 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIA 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443
Done!