Query 036565
Match_columns 180
No_of_seqs 143 out of 316
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 04:44:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036565.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036565hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hcia4 a.7.1.1 (A:633-746) al 60.0 6.7 0.00048 25.9 4.7 52 75-126 15-66 (114)
2 d1uklc_ a.38.1.1 (C:) SREBP-2 59.6 7 0.00051 24.2 4.5 27 96-122 32-58 (61)
3 d1r8ia_ a.8.7.1 (A:) Typo IV s 54.5 8.5 0.00062 28.1 4.9 32 98-129 9-40 (187)
4 d1urfa_ a.2.6.1 (A:) Protein k 51.0 19 0.0014 23.9 5.9 49 55-119 24-72 (81)
5 d3alca_ g.38.1.1 (A:) Ethanol 46.3 5.7 0.00041 24.8 2.3 23 10-32 3-25 (65)
6 d1am9a_ a.38.1.1 (A:) SREBP-1a 42.4 18 0.0013 23.2 4.4 30 95-124 48-77 (80)
7 d1nkpa_ a.38.1.1 (A:) Myc prot 41.7 25 0.0018 22.7 5.2 27 96-122 51-77 (88)
8 d1pyia1 g.38.1.1 (A:30-71) PPR 35.4 10 0.00073 21.9 2.0 18 17-34 1-18 (42)
9 d1zmec1 g.38.1.1 (C:31-66) PUT 31.3 12 0.00087 21.2 1.8 16 18-33 1-16 (36)
10 d3coqa1 g.38.1.1 (A:8-48) Gal4 27.1 15 0.0011 20.9 1.8 15 19-33 2-16 (41)
11 d2otaa1 a.284.1.1 (A:7-68) Hyp 24.8 21 0.0015 23.0 2.3 20 61-80 35-54 (62)
12 d1fxkc_ a.2.5.1 (C:) Prefoldin 24.6 50 0.0036 22.2 4.6 29 97-125 8-36 (133)
13 d1nkpb_ a.38.1.1 (B:) Max prot 22.8 61 0.0044 20.4 4.5 28 95-122 45-72 (83)
No 1
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=60.05 E-value=6.7 Score=25.92 Aligned_cols=52 Identities=4% Similarity=0.120 Sum_probs=44.2
Q ss_pred hHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 036565 75 DTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTP 126 (180)
Q Consensus 75 ~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eLa~~~~~La~~~~~ 126 (180)
+-+.+=+-|+..-+.+|++|-.+.|..+..+.+.++.+|..-+..|......
T Consensus 15 ~~~~~Wi~e~~~~l~~~~~~~~~~ve~~l~~h~~~e~el~~~~~~i~~l~~~ 66 (114)
T d1hcia4 15 NAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGD 66 (114)
T ss_dssp HHHHHHHHHHHHHHHSCSCTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466667788888899999999999999999999999999999988876543
No 2
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.58 E-value=7 Score=24.22 Aligned_cols=27 Identities=26% Similarity=0.231 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036565 96 IGAIALLQRKMIELQQDLAVARARLAR 122 (180)
Q Consensus 96 ~G~I~~Lq~qi~~lq~eLa~~~~~La~ 122 (180)
+-.|..||+++..+++|+...+.+...
T Consensus 32 i~YI~~Lq~~~~~L~~e~~~L~~~~~~ 58 (61)
T d1uklc_ 32 IDYIKYLQQVNHKLRQENMVLKLANQK 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999888764
No 3
>d1r8ia_ a.8.7.1 (A:) Typo IV secretion system protein TraC {Escherichia coli [TaxId: 562]}
Probab=54.47 E-value=8.5 Score=28.08 Aligned_cols=32 Identities=6% Similarity=0.190 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcc
Q 036565 98 AIALLQRKMIELQQDLAVARARLARYTTPAAS 129 (180)
Q Consensus 98 ~I~~Lq~qi~~lq~eLa~~~~~La~~~~~~~~ 129 (180)
-|..+..|++.++.||..++.+++...+....
T Consensus 9 ql~q~~~ql~~~k~Ql~q~k~~~~s~tG~r~~ 40 (187)
T d1r8ia_ 9 QLEQMAQQLEQLKSQLETQKNMYESMAKTTNL 40 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 46788899999999999999999988776544
No 4
>d1urfa_ a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.98 E-value=19 Score=23.86 Aligned_cols=49 Identities=16% Similarity=0.122 Sum_probs=30.9
Q ss_pred hhccchHHHHhhcCCCccchhHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 036565 55 VFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARAR 119 (180)
Q Consensus 55 vFG~snv~k~L~~lp~~~R~~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eLa~~~~~ 119 (180)
.=|+.|++++++.-...+|.... ||+ +.+..-.++|+.|+.+|..+++.
T Consensus 24 keGaEnm~k~~~~~~~~DrK~l~-----eaq-----------~~l~eS~~Ki~lLr~~L~~~~q~ 72 (81)
T d1urfa_ 24 KQGAENMIQTYSNGSTKDRKLLL-----TAQ-----------QMLQDSKTKIDIIRMQLRRALQA 72 (81)
T ss_dssp HHHHHHHHHHHHHSSSCCHHHHH-----HHH-----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCcccHHHHH-----HHH-----------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45899999999987666665332 333 33344456666666666666554
No 5
>d3alca_ g.38.1.1 (A:) Ethanol regulon transcriptional activator ALCR DNA-binding domain {Emericella nidulans, also known as Aspergillus nidulans [TaxId: 162425]}
Probab=46.32 E-value=5.7 Score=24.81 Aligned_cols=23 Identities=35% Similarity=0.700 Sum_probs=18.4
Q ss_pred cCCCCCCCCCCcHHhHHhhhcCC
Q 036565 10 MRGHEPRSSSSCAACKLLKRKCI 32 (180)
Q Consensus 10 ~~~~~~~~~~~CAACK~lRRkC~ 32 (180)
|.....+.+.+|-.||..+.+|.
T Consensus 3 ~~~~r~R~~~AC~~CR~rK~kCd 25 (65)
T d3alca_ 3 MADTRRRQNHSCDPCRKGKRRCD 25 (65)
T ss_dssp SSCCSSSSCCSCHHHHHTTCCCS
T ss_pred CCCCCcCcCHhHHHHHhccccCC
Confidence 44445567889999999999995
No 6
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.35 E-value=18 Score=23.19 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036565 95 CIGAIALLQRKMIELQQDLAVARARLARYT 124 (180)
Q Consensus 95 c~G~I~~Lq~qi~~lq~eLa~~~~~La~~~ 124 (180)
.+-.|..|+.+++.++++....+..+....
T Consensus 48 a~~yI~~L~~~~~~L~~e~~~lk~~~~~~~ 77 (80)
T d1am9a_ 48 AIDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 477899999999999999999998887654
No 7
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.69 E-value=25 Score=22.66 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036565 96 IGAIALLQRKMIELQQDLAVARARLAR 122 (180)
Q Consensus 96 ~G~I~~Lq~qi~~lq~eLa~~~~~La~ 122 (180)
+-.|..|+.++..++.++...+.+...
T Consensus 51 ~~yI~~L~~~~~~l~~~~~~l~~~~~~ 77 (88)
T d1nkpa_ 51 TAYILSVQAEEQKLISEEDLLRKRREQ 77 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566888888888888877777766654
No 8
>d1pyia1 g.38.1.1 (A:30-71) PPR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=35.35 E-value=10 Score=21.94 Aligned_cols=18 Identities=39% Similarity=0.789 Sum_probs=14.2
Q ss_pred CCCCcHHhHHhhhcCCCC
Q 036565 17 SSSSCAACKLLKRKCIPT 34 (180)
Q Consensus 17 ~~~~CAACK~lRRkC~~~ 34 (180)
|..+|..||..+.+|...
T Consensus 1 Sr~aC~~Cr~rK~kCd~~ 18 (42)
T d1pyia1 1 SRTACKRCRLKKIKCDQE 18 (42)
T ss_dssp CCCCCHHHHHHTCCCCCC
T ss_pred CcHHHHHHHHhCcCCCCc
Confidence 456899999999999763
No 9
>d1zmec1 g.38.1.1 (C:31-66) PUT3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=31.34 E-value=12 Score=21.17 Aligned_cols=16 Identities=31% Similarity=0.673 Sum_probs=11.6
Q ss_pred CCCcHHhHHhhhcCCC
Q 036565 18 SSSCAACKLLKRKCIP 33 (180)
Q Consensus 18 ~~~CAACK~lRRkC~~ 33 (180)
+.+|-.||..+.||..
T Consensus 1 S~aC~~Cr~rK~kCd~ 16 (36)
T d1zmec1 1 SVACLSCRKRHIKCPG 16 (36)
T ss_dssp CCCCHHHHHHTCCCCC
T ss_pred CccHHHHHHhCCcCCC
Confidence 3577888888888764
No 10
>d3coqa1 g.38.1.1 (A:8-48) Gal4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.11 E-value=15 Score=20.89 Aligned_cols=15 Identities=40% Similarity=0.913 Sum_probs=12.6
Q ss_pred CCcHHhHHhhhcCCC
Q 036565 19 SSCAACKLLKRKCIP 33 (180)
Q Consensus 19 ~~CAACK~lRRkC~~ 33 (180)
.+|..|+..+.||..
T Consensus 2 ~AC~~Cr~rK~KCd~ 16 (41)
T d3coqa1 2 QACDICRLKKLKCSK 16 (41)
T ss_dssp CCCHHHHHHTCCCCC
T ss_pred cchHHHHHhCcccCC
Confidence 578999999999965
No 11
>d2otaa1 a.284.1.1 (A:7-68) Hypothetical protein CPS2611 {Colwellia psychrerythraea [TaxId: 28229]}
Probab=24.81 E-value=21 Score=22.98 Aligned_cols=20 Identities=35% Similarity=0.702 Sum_probs=16.0
Q ss_pred HHHHhhcCCCccchhHHHHH
Q 036565 61 VSKILTEVPEEQREDTVNSL 80 (180)
Q Consensus 61 v~k~L~~lp~~~R~~a~~SL 80 (180)
++++|.++|+.+|...+++.
T Consensus 35 vTnii~~V~~~qR~~iAe~F 54 (62)
T d2otaa1 35 VTNIIAQVPESKRVAVVDNF 54 (62)
T ss_dssp HHHHHTTSCGGGHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 45667889999999888764
No 12
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=24.64 E-value=50 Score=22.19 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 036565 97 GAIALLQRKMIELQQDLAVARARLARYTT 125 (180)
Q Consensus 97 G~I~~Lq~qi~~lq~eLa~~~~~La~~~~ 125 (180)
+.+..|+++++.+++++..++..++.|..
T Consensus 8 ~~~~~l~~~l~~l~~~i~~l~~~~~e~~~ 36 (133)
T d1fxkc_ 8 AQLNIYQSQVELIQQQMEAVRATISELEI 36 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666543
No 13
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.81 E-value=61 Score=20.36 Aligned_cols=28 Identities=25% Similarity=0.190 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036565 95 CIGAIALLQRKMIELQQDLAVARARLAR 122 (180)
Q Consensus 95 c~G~I~~Lq~qi~~lq~eLa~~~~~La~ 122 (180)
.+-.|..|+.++..++.++...+.+...
T Consensus 45 A~~yI~~L~~~~~~l~~~~~~l~~~~~~ 72 (83)
T d1nkpb_ 45 ATEYIQYMRRKNHTHQQDIDDLKRQNAL 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888888887777777665544
Done!