BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036566
         (420 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8K1R7|NEK9_MOUSE Serine/threonine-protein kinase Nek9 OS=Mus musculus GN=Nek9 PE=1
           SV=2
          Length = 984

 Score = 32.7 bits (73), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 12/105 (11%)

Query: 248 YLDTKGLGEGS---KEMEKRTIGVVHELLSLTLWKKMSIVKLGHFKREFSLPEKLNVLLL 304
           Y+  + LG G+     + +RT     E  SL +WK++ + +L   +R  +L E + + LL
Sbjct: 52  YIPIRVLGRGAFGEATLYRRT-----EDDSLVVWKEVDLTRLSEKERRDALNEIVILALL 106

Query: 305 KHPGIFYVSNKYQIYTVLL--REAYNGSELIEKDPLVVVKDKFGE 347
           +H  I    N +   T LL   E  NG  L +K  ++  KDK  E
Sbjct: 107 QHDNIIAYYNHFMDNTTLLIELEYCNGGNLYDK--ILRQKDKLFE 149


>sp|Q76N89|HECW1_HUMAN E3 ubiquitin-protein ligase HECW1 OS=Homo sapiens GN=HECW1 PE=1 SV=3
          Length = 1606

 Score = 32.7 bits (73), Expect = 5.3,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 13/104 (12%)

Query: 62   ILRLPSQVATVKYLQKKFKTLDLQGKAINWLKKYPCC--FEVYFENNEH-YCRLTKRMMS 118
            +LRLP  ++ ++YL ++F       +++ W+K        ++ F  NE  + ++T+R + 
Sbjct: 1370 LLRLPCDLSDLEYLDEEFH------QSLQWMKDNNITDILDLTFTVNEEVFGQVTERELK 1423

Query: 119  LVEEEESVKEMQESAYVERLVKLLMMSRNQRLNVVKLNELKRNF 162
                   V E  +  Y+ER+VK     R +R  V +   L R F
Sbjct: 1424 SGGANTQVTEKNKKEYIERMVKW----RVERGVVQQTEALVRGF 1463


>sp|Q8TD19|NEK9_HUMAN Serine/threonine-protein kinase Nek9 OS=Homo sapiens GN=NEK9 PE=1
           SV=2
          Length = 979

 Score = 32.7 bits (73), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 274 SLTLWKKMSIVKLGHFKREFSLPEKLNVLLLKHPGIFYVSNKYQIYTVLL--REAYNGSE 331
           SL +WK++ + +L   +R  +L E + + LL+H  I    N +   T LL   E  NG  
Sbjct: 76  SLVVWKEVDLTRLSEKERRDALNEIVILALLQHDNIIAYYNHFMDNTTLLIELEYCNGGN 135

Query: 332 LIEKDPLVVVKDKFGE 347
           L +K  ++  KDK  E
Sbjct: 136 LYDK--ILRQKDKLFE 149


>sp|Q6FU41|AEP1_CANGA ATPase expression protein 1, mitochondrial OS=Candida glabrata
           (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
           NRRL Y-65) GN=AEP1 PE=3 SV=1
          Length = 505

 Score = 32.3 bits (72), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 13/110 (11%)

Query: 153 VKLNELKRNFGFPDEYIIRILPKYPDMFQLVNYSGRKSSMEIELVSWKPEL--AVSAVEA 210
           + LN  KR    P   I R+ PK   +       G  SS+ + +   KP L  + S + +
Sbjct: 12  IPLNIFKRK-SIPFGRISRVTPKPEQLLHPFYRPGNVSSLGLCMKEGKPALLDSKSIIPS 70

Query: 211 SAQ--KQGTEPCFSCCLP-------STWVKSWEKFKEFNATPYIS-PYLD 250
             Q  K G     +C L        STW+K +E  +E   TP+ + P+ D
Sbjct: 71  IVQNSKTGNPVLANCSLAFSSVQGVSTWLKQYENLRETRTTPFSTIPFPD 120


>sp|Q96M86|DNHD1_HUMAN Dynein heavy chain domain-containing protein 1 OS=Homo sapiens
            GN=DNHD1 PE=2 SV=2
          Length = 4753

 Score = 32.3 bits (72), Expect = 6.3,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 72/164 (43%), Gaps = 7/164 (4%)

Query: 18   LYTLPCFHNILRSFSLWSMKKVPELESALSRNRRWIVNNQIKNIILRLPSQVATVKYLQK 77
            L T   F + L +F +   + + ++++   R     V N ++N+ + +         +  
Sbjct: 3109 LVTPKTFLDFLDTFLMLQQQTILKIKNKAQR-----VQNALENLRMLIKEHGTHANLIFD 3163

Query: 78   KFKTLDLQGKAINWLKKYPCCFEVYFENNEHYCRLTKRMMSLVEEEESVKEMQESAYVER 137
              + L   GK+++  ++     ++ ++     CR  + ++  +  +    + Q  A++E+
Sbjct: 3164 LEQQLKDSGKSLSMFQQQLEQSKLLYKQQLEECRHQENLIENLARQRDALQAQREAFLEQ 3223

Query: 138  LVKLLMMSRNQRLNVVKLNELKRNFGFPDEYIIRILPKYPDMFQ 181
            + K  +   +Q L V    E+ R++  P E ++R+     D+F 
Sbjct: 3224 MSKAFLEPLSQ-LQVADFEEI-RSYRAPPESVVRVTDAMCDLFH 3265


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.135    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,952,142
Number of Sequences: 539616
Number of extensions: 6446315
Number of successful extensions: 17240
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 17227
Number of HSP's gapped (non-prelim): 27
length of query: 420
length of database: 191,569,459
effective HSP length: 120
effective length of query: 300
effective length of database: 126,815,539
effective search space: 38044661700
effective search space used: 38044661700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)