Query 036566
Match_columns 420
No_of_seqs 147 out of 188
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 04:45:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036566.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036566hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3broa1 a.4.5.28 (A:3-137) Tra 31.9 37 0.0027 25.8 5.6 69 57-128 33-107 (135)
2 d1v9ca_ c.23.17.1 (A:) Precorr 25.6 19 0.0014 31.4 2.9 56 214-278 143-201 (204)
3 d1f2va_ c.23.17.1 (A:) Precorr 21.3 34 0.0025 29.7 3.8 65 204-275 137-207 (209)
4 d2frha1 a.4.5.28 (A:102-216) P 18.0 94 0.0068 23.2 5.5 62 58-122 38-105 (115)
5 d1ou0a_ c.23.17.1 (A:) Precorr 15.6 65 0.0047 27.5 4.2 63 204-275 121-189 (190)
6 d1sfka_ a.190.1.1 (A:) Flavivi 13.8 24 0.0018 26.2 0.7 19 276-294 47-65 (73)
7 d3ctaa1 a.4.5.28 (A:5-89) Ta10 13.3 1.6E+02 0.011 21.0 5.4 57 67-127 19-79 (85)
8 d1hsja1 a.4.5.28 (A:373-487) S 10.9 2.9E+02 0.021 20.2 7.2 65 57-124 36-106 (115)
9 d2qqra1 b.34.9.1 (A:897-955) J 10.1 33 0.0024 24.4 0.4 11 408-418 29-39 (59)
10 d1gpma1 c.26.2.1 (A:208-404) G 9.7 55 0.004 25.2 1.7 21 153-177 175-195 (197)
No 1
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}
Probab=31.86 E-value=37 Score=25.83 Aligned_cols=69 Identities=12% Similarity=0.099 Sum_probs=46.8
Q ss_pred HHHHHHhhCCCCccchHHHHhhccccCCCc----hHHHHhhhCCcceEEeecC--CcceEecCHHHHHHHHHHHHHHh
Q 036566 57 QIKNIILRLPSQVATVKYLQKKFKTLDLQG----KAINWLKKYPCCFEVYFEN--NEHYCRLTKRMMSLVEEEESVKE 128 (420)
Q Consensus 57 ~lk~li~s~P~~~ipl~~L~k~~~~L~L~~----~v~~FLrkyP~iF~~~~~~--~~~~~rLT~~a~~L~~eE~~v~~ 128 (420)
.+...|...|++.++..+|.+ .++++. ++..-|.+---|-...... ....+.|||+|.++.++=.....
T Consensus 33 ~vL~~l~~~~~~~it~~ela~---~~~~~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~~~~~~~~~ 107 (135)
T d3broa1 33 TIIDYLSRNKNKEVLQRDLES---EFSIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLETIILSYMD 107 (135)
T ss_dssp HHHHHHHHTTTSCCBHHHHHH---HHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHH---HHCcCHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccHHHHHHHHHHHHHHH
Confidence 455667778999999988886 456642 3445555655565554332 56789999999998887555443
No 2
>d1v9ca_ c.23.17.1 (A:) Precorrin-8x methylmutase {Thermus thermophilus [TaxId: 274]}
Probab=25.55 E-value=19 Score=31.38 Aligned_cols=56 Identities=25% Similarity=0.442 Sum_probs=40.4
Q ss_pred hcCCCCcccccCCchhh---HhHHHHhhhhcCCCCCCCCCCCCCCCCChhhhHHHHHHHHHHhhccch
Q 036566 214 KQGTEPCFSCCLPSTWV---KSWEKFKEFNATPYISPYLDTKGLGEGSKEMEKRTIGVVHELLSLTLW 278 (420)
Q Consensus 214 ~~g~~~~F~~~fP~g~~---~~~e~l~~fQ~LPYiSPYed~~~l~~~S~e~EKRaVaVlHELLSLTve 278 (420)
+.|.+|++-+-+|.||+ .+.++|.+. . =||--..+-..||.. |+|+++.||.|--+
T Consensus 143 ~~g~~PalVIG~PVGFVgA~ESK~~L~~~-~----vP~It~~GrkGGS~v----AaAivNaLl~la~~ 201 (204)
T d1v9ca_ 143 RQGARPALVLGMPVGFVNVLEAKRALMEA-P----VPWIVTEGRKGGSTL----VVAALHALIRLAAD 201 (204)
T ss_dssp HTTCCCSEEEECCCSSSSHHHHHHHHTTS-S----SCEEEECTTCCCHHH----HHHHHHHHHHHHHH
T ss_pred hcCCCCcEEEeCCccccCHHHHHHHHHhC-C----CCEEEEecCCCCHHH----HHHHHHHHHHHHHh
Confidence 35777899999999997 455667542 2 356556666678865 79999999988544
No 3
>d1f2va_ c.23.17.1 (A:) Precorrin-8x methylmutase {Pseudomonas denitrificans [TaxId: 43306]}
Probab=21.28 E-value=34 Score=29.72 Aligned_cols=65 Identities=23% Similarity=0.300 Sum_probs=43.3
Q ss_pred cccHHHHHHh--hcC-CCCcccccCCchhh---HhHHHHhhhhcCCCCCCCCCCCCCCCCChhhhHHHHHHHHHHhhc
Q 036566 204 AVSAVEASAQ--KQG-TEPCFSCCLPSTWV---KSWEKFKEFNATPYISPYLDTKGLGEGSKEMEKRTIGVVHELLSL 275 (420)
Q Consensus 204 AVS~~Ek~a~--~~g-~~~~F~~~fP~g~~---~~~e~l~~fQ~LPYiSPYed~~~l~~~S~e~EKRaVaVlHELLSL 275 (420)
|-|++..-.+ +.| .+|++-+-+|.||+ .+.++|.+ .++-=||--..+-..||.. |+|+++.||.+
T Consensus 137 APTAL~~lleli~~g~~~PalVIG~PVGFVgaaESK~~L~~---s~~~vP~It~~GrkGGS~v----AaAivNALlr~ 207 (209)
T d1f2va_ 137 APTALFFLLEMLRDGAPKPAAILGMPVGFVGAAESKDALAE---NSYGVPFAIVRGRLGGSAM----TAAALNSLARP 207 (209)
T ss_dssp CHHHHHHHHHHHHTTCCCCSEEEECCCSSSSHHHHHHHHHH---CCTTCCEEEECTTCCCHHH----HHHHHHHHHSC
T ss_pred ChHHHHHHHHHHhcCCCCCcEEEECCccccChHHHHHHHHh---CCCCCCEEEEecCCCcHHH----HHHHHHHHHhc
Confidence 4577766554 445 57899999999997 44555643 2333344445555567764 79999999865
No 4
>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}
Probab=17.95 E-value=94 Score=23.22 Aligned_cols=62 Identities=13% Similarity=0.053 Sum_probs=40.5
Q ss_pred HHHHHhhCCCCccchHHHHhhccccCCCc----hHHHHhhhCCcceEEeecC--CcceEecCHHHHHHHHH
Q 036566 58 IKNIILRLPSQVATVKYLQKKFKTLDLQG----KAINWLKKYPCCFEVYFEN--NEHYCRLTKRMMSLVEE 122 (420)
Q Consensus 58 lk~li~s~P~~~ipl~~L~k~~~~L~L~~----~v~~FLrkyP~iF~~~~~~--~~~~~rLT~~a~~L~~e 122 (420)
+...|...|++.+++..|.+ .++++. +++.-|.+---|-..-.+. ..-++.|||+|.+.+++
T Consensus 38 vL~~l~~~~~~~~t~~~la~---~l~~~~~tvs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~ 105 (115)
T d2frha1 38 VLTYISENKEKEYYLKDIIN---HLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIES 105 (115)
T ss_dssp HHHHHHHTCCSEEEHHHHHH---HSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHH---HHCCCHhHHHHHHHHHHhhhhheeeecccCCceEEEEECHHHHHHHHH
Confidence 33457778888888888775 566742 3445555555553332222 57789999999987765
No 5
>d1ou0a_ c.23.17.1 (A:) Precorrin-8x methylmutase related protein {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=15.62 E-value=65 Score=27.50 Aligned_cols=63 Identities=17% Similarity=0.211 Sum_probs=42.7
Q ss_pred cccHHHHHHh---hcCCCCcccccCCchhh---HhHHHHhhhhcCCCCCCCCCCCCCCCCChhhhHHHHHHHHHHhhc
Q 036566 204 AVSAVEASAQ---KQGTEPCFSCCLPSTWV---KSWEKFKEFNATPYISPYLDTKGLGEGSKEMEKRTIGVVHELLSL 275 (420)
Q Consensus 204 AVS~~Ek~a~---~~g~~~~F~~~fP~g~~---~~~e~l~~fQ~LPYiSPYed~~~l~~~S~e~EKRaVaVlHELLSL 275 (420)
|-|++..-.+ +.+.+|++-+-+|.||+ .+.++|.+. ..| |--..+-..||.. |+|++|.||.|
T Consensus 121 APTAL~~Ll~li~~g~~~PalVIG~PVGFVga~ESK~~L~~~-~vP----~It~~GrkGGS~v----AaAivNAL~~l 189 (190)
T d1ou0a_ 121 APTALLEAMRMIEENGWYDIPIVGIPVGFINASKAKEGLVSS-HIE----YISVEGHRGGSPI----AASIVNGFGRF 189 (190)
T ss_dssp CHHHHHHHHHHHHHHTCTTCCEEECCCCSHHHHHHHHHHHHS-SSC----EEEESSSCCCHHH----HHHHHHHHGGG
T ss_pred CcHHHHHHHHHHHhcCCCCCeEEECCCCccCHHHHHHHHHhC-CCC----EEEEecCCCcHHH----HHHHHHHHHHh
Confidence 4466655443 34567888899999997 446667653 344 4445555567765 79999999976
No 6
>d1sfka_ a.190.1.1 (A:) Flavivirus capsid protein C {Kunjin virus [TaxId: 11077]}
Probab=13.81 E-value=24 Score=26.17 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=17.1
Q ss_pred cchhhhhhhHHhhhhhhcC
Q 036566 276 TLWKKMSIVKLGHFKREFS 294 (420)
Q Consensus 276 TveKr~~v~~L~~fr~efg 294 (420)
+|+|...+.+|..|++|.|
T Consensus 47 ~v~K~~A~k~L~~FKKeig 65 (73)
T d1sfka_ 47 SVNKQTAMKHLLSFKKELG 65 (73)
T ss_dssp TSCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHH
Confidence 6889999999999999986
No 7
>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}
Probab=13.35 E-value=1.6e+02 Score=21.04 Aligned_cols=57 Identities=12% Similarity=0.060 Sum_probs=32.6
Q ss_pred CCccchHHHHhhccccCCC-chHHHHh---hhCCcceEEeecCCcceEecCHHHHHHHHHHHHHH
Q 036566 67 SQVATVKYLQKKFKTLDLQ-GKAINWL---KKYPCCFEVYFENNEHYCRLTKRMMSLVEEEESVK 127 (420)
Q Consensus 67 ~~~ipl~~L~k~~~~L~L~-~~v~~FL---rkyP~iF~~~~~~~~~~~rLT~~a~~L~~eE~~v~ 127 (420)
+..++...|.+ .+|++ ..+...| .+---|-. -.++...++.||++|.+++.++..-+
T Consensus 19 ~~~lt~~eLa~---~l~i~~~~vs~~l~~Le~~GlV~r-~~D~R~~~i~LT~~G~~~l~~~~~~~ 79 (85)
T d3ctaa1 19 RAYLTSSKLAD---MLGISQQSASRIIIDLEKNGYITR-TVTKRGQILNITEKGLDVLYTEFADL 79 (85)
T ss_dssp EEECCHHHHHH---HHTSCHHHHHHHHHHHHHTTSEEE-EEETTEEEEEECHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHH---HHCCCHHHHHHHHHHHHHCCCeee-ecccccccceECHHHHHHHHHHHHHH
Confidence 44566777664 56664 2233322 22222221 12456778999999999988876443
No 8
>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]}
Probab=10.91 E-value=2.9e+02 Score=20.23 Aligned_cols=65 Identities=20% Similarity=0.091 Sum_probs=40.5
Q ss_pred HHHHHHhhCCCCccchHHHHhhccccCCCc----hHHHHhhhCCcceEEeec--CCcceEecCHHHHHHHHHHH
Q 036566 57 QIKNIILRLPSQVATVKYLQKKFKTLDLQG----KAINWLKKYPCCFEVYFE--NNEHYCRLTKRMMSLVEEEE 124 (420)
Q Consensus 57 ~lk~li~s~P~~~ipl~~L~k~~~~L~L~~----~v~~FLrkyP~iF~~~~~--~~~~~~rLT~~a~~L~~eE~ 124 (420)
.+..+|...++..+++..|.+ .+++.. +++.-|.+---|=....+ ...-++.||++|.+++.+-.
T Consensus 36 ~vL~~l~~~~~~~~t~~ela~---~l~~~~~~vs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~~~ 106 (115)
T d1hsja1 36 YILNHILRSESNEISSKEIAK---CSEFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQKLI 106 (115)
T ss_dssp HHHHHHHTCSCSEEEHHHHHH---SSCCCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHHHHHH
T ss_pred HHHHHHHccCCCCcCHHHHHH---HHCCChhhHHHHHHHHHHcCCeEEEeecCCCceEEEEECHHHHHHHHHHH
Confidence 345556667777888888875 577752 233334333333222222 16789999999999887643
No 9
>d2qqra1 b.34.9.1 (A:897-955) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.08 E-value=33 Score=24.41 Aligned_cols=11 Identities=64% Similarity=1.223 Sum_probs=8.7
Q ss_pred hhhheeeccCC
Q 036566 408 KRFYKVLFDDG 418 (420)
Q Consensus 408 ~~~~~~~~~~~ 418 (420)
.-||.|-|||+
T Consensus 29 qtfyeV~FdDg 39 (59)
T d2qqra1 29 ETFYEVNFDDG 39 (59)
T ss_dssp EEEEEEEETTS
T ss_pred EEEEEEEecCC
Confidence 45999999775
No 10
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain {Escherichia coli [TaxId: 562]}
Probab=9.72 E-value=55 Score=25.20 Aligned_cols=21 Identities=19% Similarity=0.460 Sum_probs=16.5
Q ss_pred HHHHHHHHhcCCChhhhhccCCCCC
Q 036566 153 VKLNELKRNFGFPDEYIIRILPKYP 177 (420)
Q Consensus 153 ~kl~~lr~dLGLP~DF~~~lv~~yP 177 (420)
..|..+..+||||.+. +.++|
T Consensus 175 ~eV~~lA~~lglP~~i----~~~~p 195 (197)
T d1gpma1 175 DEVRKIGLELGLPYDM----LYRHP 195 (197)
T ss_dssp HHHHHHHHHTTCCHHH----HTSCC
T ss_pred HHHHHHHHHcCCCHHH----hCCCC
Confidence 4688999999999974 45555
Done!