BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036568
(168 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A8MS78|Y1583_ARATH Uncharacterized protein At1g05835 OS=Arabidopsis thaliana
GN=At1g05835 PE=2 SV=1
Length = 127
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 14/83 (16%)
Query: 84 VQILNTCTCVSESESGGCSICNIHVNCGWFSSARLVNPQVFRRIHYD--DCLVNDGEALP 141
V+++N C C I N+ + C F + LV+P R + +C+VNDG L
Sbjct: 50 VEVMNKCPM--------CPIINLRLKCQGFPQS-LVDPTFLRVLSSSAGNCVVNDGLPLS 100
Query: 142 PGQALSFQYANTFQY---PLSVS 161
P Q LSF Y+NT Q+ PLS S
Sbjct: 101 PMQTLSFNYSNTHQFALRPLSWS 123
>sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein At3g53360,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2
SV=1
Length = 768
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 92 CVSESESG----GCSICNIHVNCGWFSSARLVNPQVFR 125
C+ +G GCS+C+++ CG+ +SAR V Q+ R
Sbjct: 296 CIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIER 333
>sp|B9M520|SYFA_GEOSF Phenylalanine--tRNA ligase alpha subunit OS=Geobacter sp. (strain
FRC-32) GN=pheS PE=3 SV=1
Length = 338
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Query: 100 GCSICNIHVNCGWFS--SARLVNPQVFRRIHYD 130
GC +C N GW A +V+P+V+R ++YD
Sbjct: 269 GCRVCK---NTGWLEILGAGMVDPEVYRHVNYD 298
>sp|A5G4T3|SYFA_GEOUR Phenylalanine--tRNA ligase alpha subunit OS=Geobacter
uraniireducens (strain Rf4) GN=pheS PE=3 SV=1
Length = 338
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Query: 100 GCSICNIHVNCGWFS--SARLVNPQVFRRIHYD 130
GC +C N GW A +V+P+V+R ++YD
Sbjct: 269 GCRVCK---NTGWLEILGAGMVDPEVYRHVNYD 298
>sp|A1ARE1|SYFA_PELPD Phenylalanine--tRNA ligase alpha subunit OS=Pelobacter propionicus
(strain DSM 2379) GN=pheS PE=3 SV=1
Length = 338
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Query: 100 GCSICNIHVNCGWFS--SARLVNPQVFRRIHYD 130
GC +C N GW A +V+P+V+R + YD
Sbjct: 269 GCRVCK---NSGWLEILGAGMVDPEVYRHVGYD 298
>sp|Q12XU7|SYD_METBU Aspartate--tRNA ligase OS=Methanococcoides burtonii (strain DSM
6242) GN=aspS PE=3 SV=1
Length = 443
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 15 VVRDAAGIKRVELLVSKENSTAFNINRKLLRYSAAAADGNRI-------GTACSKDDIVI 67
VVRD G ++ L+ K + F+ RKL+R S A G G + IV+
Sbjct: 43 VVRDREGRAQITLVKKKIDKEIFDAARKLVRESIVAVTGTAKAEGKAPNGYEIIPESIVV 102
Query: 68 YQGSTAPLP 76
+ +PLP
Sbjct: 103 LNEAESPLP 111
>sp|A9BFH2|SYFA_PETMO Phenylalanine--tRNA ligase alpha subunit OS=Petrotoga mobilis
(strain DSM 10674 / SJ95) GN=pheS PE=3 SV=1
Length = 344
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Query: 100 GCSICNIHVNCGWFS--SARLVNPQVFRRIHYD 130
GC++C N GW A LV+P VF+ ++YD
Sbjct: 275 GCNVCK---NTGWIEILGAGLVHPNVFQSVNYD 304
>sp|P35169|TOR1_YEAST Serine/threonine-protein kinase TOR1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TOR1 PE=1 SV=3
Length = 2470
Score = 30.0 bits (66), Expect = 6.4, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Query: 17 RDAAGIKRVELLVSKENSTAF--------NINRKLLRYSAAAADGNRIGTACSKDDIVIY 68
R A I +LLVS E+ + +IN K+L R+G S D ++ +
Sbjct: 89 RKLASISLFDLLVSLEHELSIEEFQAVSNDINNKILELVHTKKTSTRVGAVLSIDTLISF 148
Query: 69 QGSTAPLPN 77
T LPN
Sbjct: 149 YAYTERLPN 157
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,858,217
Number of Sequences: 539616
Number of extensions: 2278914
Number of successful extensions: 4943
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 4941
Number of HSP's gapped (non-prelim): 10
length of query: 168
length of database: 191,569,459
effective HSP length: 109
effective length of query: 59
effective length of database: 132,751,315
effective search space: 7832327585
effective search space used: 7832327585
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)