Query 036568
Match_columns 168
No_of_seqs 103 out of 136
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 04:47:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036568.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036568hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3idu_A Uncharacterized protein 28.8 1.7E+02 0.0059 21.5 6.5 68 61-153 15-83 (127)
2 1b4r_A Protein (PKD1_human); P 22.6 46 0.0016 23.0 2.1 22 135-156 34-57 (80)
3 3e8v_A Possible transglutamina 21.7 58 0.002 23.1 2.5 21 135-156 10-30 (82)
4 3f9x_A Histone-lysine N-methyl 14.0 59 0.002 23.9 1.1 21 135-155 135-155 (166)
5 1yew_A Particulate methane mon 13.1 4.4E+02 0.015 23.6 6.5 62 74-149 260-331 (382)
6 2qsv_A Uncharacterized protein 12.5 2.4E+02 0.0082 21.8 4.3 40 68-115 124-164 (220)
7 3rfr_A PMOB; membrane, oxidore 12.3 2.6E+02 0.009 25.3 4.9 63 74-150 294-364 (419)
8 3vhs_A ATPase wrnip1; zinc fin 11.2 69 0.0023 18.7 0.5 8 78-85 1-8 (29)
9 2hcz_X Beta-expansin 1A; domai 10.8 1.6E+02 0.0055 24.1 2.9 62 82-159 89-162 (245)
10 3iag_C Recombining binding pro 10.3 3.3E+02 0.011 24.7 4.8 70 81-154 193-268 (422)
No 1
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=28.84 E-value=1.7e+02 Score=21.52 Aligned_cols=68 Identities=13% Similarity=0.161 Sum_probs=40.2
Q ss_pred CCCceeEEecccCCCCCCcc-cEEEEEecccccCCCCCCCCcccccEEEEcCCcccceeeCCcceeeecCCceEecCCcc
Q 036568 61 SKDDIVIYQGSTAPLPNGIP-ACTVQILNTCTCVSESESGGCSICNIHVNCGWFSSARLVNPQVFRRIHYDDCLVNDGEA 139 (168)
Q Consensus 61 s~sDI~V~Q~~TG~~v~G~P-ey~VtI~N~C~~~~~~~~~~C~~snV~L~CggF~Sa~~VDP~vfrrl~~ddCLVNdG~p 139 (168)
++.|+.|....-.....|.+ .+.|+|.|.=. .+..+..|.- -+|=.+... =-+ .
T Consensus 15 ~~pDL~V~is~P~~v~~G~~~ti~vtV~N~G~---------~~a~~~~V~l-------yvng~~v~t-----~~v----~ 69 (127)
T 3idu_A 15 EFPDLTVEIKGPDVVGVNKLAEYEVHVKNLGG---------IGVPSTKVRV-------YINGTLYKN-----WTV----S 69 (127)
T ss_dssp SSCCEEEEEESCSEECTTCCEEEEEEEEECSS---------SCEEEEEEEE-------EETTEEEEE-----EEE----E
T ss_pred cCCCeEEEecCCCcccCCCEEEEEEEEEECCC---------CccCCcEEEE-------EECCEEEee-----EEe----c
Confidence 56788884433233445766 79999999875 5555544432 123222211 012 5
Q ss_pred CCCCCeeEEEEecC
Q 036568 140 LPPGQALSFQYANT 153 (168)
Q Consensus 140 I~~g~~VsF~YAws 153 (168)
|.+|++-+|.|.|.
T Consensus 70 La~G~s~tv~f~~~ 83 (127)
T 3idu_A 70 LGPKEEKVLTFNWT 83 (127)
T ss_dssp ECTTCEEEEEEEEC
T ss_pred cCCCCeEEEEEEEE
Confidence 88999977777775
No 2
>1b4r_A Protein (PKD1_human); PKD domain 1 from human polycystein-1, polycystin (precursor), membrane protein; NMR {Homo sapiens} SCOP: b.1.3.1
Probab=22.61 E-value=46 Score=23.01 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=10.0
Q ss_pred cCCccC--CCCCeeEEEEecCCcc
Q 036568 135 NDGEAL--PPGQALSFQYANTFQY 156 (168)
Q Consensus 135 NdG~pI--~~g~~VsF~YAws~~f 156 (168)
.||.+. ..+..++-+|+-.-.|
T Consensus 34 GDGs~~~~s~~~~~tHtY~~~G~Y 57 (80)
T 1b4r_A 34 GDGSAEVDAAGPAASHRYVLPGRY 57 (80)
T ss_dssp CSSCCEEEEETTEEEEEECSSEEE
T ss_pred CCCCcccccCCCCCEEECCCCcEE
Confidence 444442 3344455555544444
No 3
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}
Probab=21.66 E-value=58 Score=23.13 Aligned_cols=21 Identities=14% Similarity=0.433 Sum_probs=17.0
Q ss_pred cCCccCCCCCeeEEEEecCCcc
Q 036568 135 NDGEALPPGQALSFQYANTFQY 156 (168)
Q Consensus 135 NdG~pI~~g~~VsF~YAws~~f 156 (168)
.+|+|++ |..|.|+|-|...|
T Consensus 10 ~~GkPV~-gA~Vefe~yNyae~ 30 (82)
T 3e8v_A 10 AEGQPVA-DATVEFKVYNYAEF 30 (82)
T ss_dssp TTSCBCT-TCEEEEEEEETTEE
T ss_pred CCCCCCC-CCEEEEEEEEchhe
Confidence 6899994 78999999986544
No 4
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*
Probab=14.03 E-value=59 Score=23.92 Aligned_cols=21 Identities=19% Similarity=0.444 Sum_probs=17.4
Q ss_pred cCCccCCCCCeeEEEEecCCc
Q 036568 135 NDGEALPPGQALSFQYANTFQ 155 (168)
Q Consensus 135 NdG~pI~~g~~VsF~YAws~~ 155 (168)
---+.|.+|+.++|.|.+++.
T Consensus 135 ~A~rdI~~GEELt~dY~~~~~ 155 (166)
T 3f9x_A 135 IASRDIAAGEELLFDYGDRSK 155 (166)
T ss_dssp EESSCBCTTCBCEECCCCCCH
T ss_pred EECCcCCCCCEEEEEcCCChh
Confidence 344799999999999998754
No 5
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=13.14 E-value=4.4e+02 Score=23.59 Aligned_cols=62 Identities=23% Similarity=0.429 Sum_probs=41.5
Q ss_pred CCCCCcccEEEEEecccccCCCCCCCCcccccEEEEcCCccc--ceeeCCcceeeec-CCce-------EecCCccCCCC
Q 036568 74 PLPNGIPACTVQILNTCTCVSESESGGCSICNIHVNCGWFSS--ARLVNPQVFRRIH-YDDC-------LVNDGEALPPG 143 (168)
Q Consensus 74 ~~v~G~Pey~VtI~N~C~~~~~~~~~~C~~snV~L~CggF~S--a~~VDP~vfrrl~-~ddC-------LVNdG~pI~~g 143 (168)
++++.--.++++|+|+=. =| | +=+.|++ ++-+||.++.--. +-+. .|+|-.||.||
T Consensus 260 ~vpgR~l~~~~~VtN~g~---------~p---v--rlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~~pI~PG 325 (382)
T 1yew_A 260 RVPGRAMRMKLTITNHGN---------SP---I--RLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNSPLAPG 325 (382)
T ss_dssp ESSCSEEEEEEEEEECSS---------SC---E--EEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCCSCBCTT
T ss_pred ecCCcEEEEEEEEEcCCC---------Cc---e--EeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCCCCcCCC
Confidence 355666789999999874 22 3 4467766 4688998855211 2122 45667799999
Q ss_pred CeeEEE
Q 036568 144 QALSFQ 149 (168)
Q Consensus 144 ~~VsF~ 149 (168)
++-+++
T Consensus 326 ETr~~~ 331 (382)
T 1yew_A 326 ETRTVD 331 (382)
T ss_dssp CEEEEE
T ss_pred ceeEEE
Confidence 998774
No 6
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=12.53 E-value=2.4e+02 Score=21.77 Aligned_cols=40 Identities=13% Similarity=0.132 Sum_probs=27.6
Q ss_pred EecccCCCCCCcc-cEEEEEecccccCCCCCCCCcccccEEEEcCCccc
Q 036568 68 YQGSTAPLPNGIP-ACTVQILNTCTCVSESESGGCSICNIHVNCGWFSS 115 (168)
Q Consensus 68 ~Q~~TG~~v~G~P-ey~VtI~N~C~~~~~~~~~~C~~snV~L~CggF~S 115 (168)
..-.-|.+. |.+ +++++|.|.-. .-=.+.+|.-+|+.+.-
T Consensus 124 ~~~dfG~i~-g~~~~~~f~i~N~G~-------~pL~I~~v~~scgct~~ 164 (220)
T 2qsv_A 124 TYLDMGQLD-GETTKAAIEIRNVGA-------GPLRLHSVTTRNPALTA 164 (220)
T ss_dssp CEEEEEECT-TSCEEEEEEEEECSS-------SCEEEEEEEECSTTEEE
T ss_pred eEEeeeccC-CCeEEEEEEEEECCC-------CCEEEEEEEeCCCCEee
Confidence 344447766 655 68999999875 33456788888887653
No 7
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=12.26 E-value=2.6e+02 Score=25.31 Aligned_cols=63 Identities=21% Similarity=0.442 Sum_probs=40.3
Q ss_pred CCCCCcccEEEEEecccccCCCCCCCCcccccEEEEcCCccc--ceeeCCcceeeec-C-CceEec----CCccCCCCCe
Q 036568 74 PLPNGIPACTVQILNTCTCVSESESGGCSICNIHVNCGWFSS--ARLVNPQVFRRIH-Y-DDCLVN----DGEALPPGQA 145 (168)
Q Consensus 74 ~~v~G~Pey~VtI~N~C~~~~~~~~~~C~~snV~L~CggF~S--a~~VDP~vfrrl~-~-ddCLVN----dG~pI~~g~~ 145 (168)
++++.--+++++|+|+=. =|+ +=+.|++ ++-+||+++.--. | ++-|.+ +..||.||++
T Consensus 294 ~vpgR~l~~~~~VtN~g~---------~pv-----rlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~pI~PGET 359 (419)
T 3rfr_A 294 KVPGRELTINVKVKNGTS---------QPV-----RLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDDVIAPGES 359 (419)
T ss_dssp ESSSSEEEEEEEEECCSS---------SCB-----EEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCCCBCTTCE
T ss_pred ecCCcEEEEEEEEecCCC---------Cce-----EEeeEEEccEEEeCcccccCCCCCchhhhhccCCCCCCCcCCCcc
Confidence 355667789999999874 233 4466765 5788998865211 2 222222 3339999999
Q ss_pred eEEEE
Q 036568 146 LSFQY 150 (168)
Q Consensus 146 VsF~Y 150 (168)
-+++-
T Consensus 360 rt~~V 364 (419)
T 3rfr_A 360 KEIVV 364 (419)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 77753
No 8
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=11.20 E-value=69 Score=18.74 Aligned_cols=8 Identities=50% Similarity=0.738 Sum_probs=3.3
Q ss_pred CcccEEEE
Q 036568 78 GIPACTVQ 85 (168)
Q Consensus 78 G~Pey~Vt 85 (168)
|-|||.|+
T Consensus 1 gspef~vq 8 (29)
T 3vhs_A 1 GSPEFQVQ 8 (29)
T ss_dssp ----CEEE
T ss_pred CCCceeee
Confidence 56899985
No 9
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays}
Probab=10.76 E-value=1.6e+02 Score=24.09 Aligned_cols=62 Identities=16% Similarity=0.187 Sum_probs=36.6
Q ss_pred EEEEEecccccCCCCCCCCc--ccccEEEEcCCccccee-------eCCcceeeecCC--ceEecCCccCCCCCeeEEEE
Q 036568 82 CTVQILNTCTCVSESESGGC--SICNIHVNCGWFSSARL-------VNPQVFRRIHYD--DCLVNDGEALPPGQALSFQY 150 (168)
Q Consensus 82 y~VtI~N~C~~~~~~~~~~C--~~snV~L~CggF~Sa~~-------VDP~vfrrl~~d--dCLVNdG~pI~~g~~VsF~Y 150 (168)
-.|+|++.|. | +..++-|+=..|...-. .+..++. +.+. .|-... |..|+|+.
T Consensus 89 v~V~VtD~C~---------C~~~~~hfDLS~~AF~~iA~~g~~~~L~~~Gii~-V~yrrV~C~~~g------g~ni~f~v 152 (245)
T 2hcz_X 89 VTVYITDMNY---------EPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMD-VEFRRVRCKYPA------GQKIVFHI 152 (245)
T ss_dssp EEEEEEEECC---------CTTSSSEEEECHHHHHHTBCTTCHHHHTTTCCEE-EEEEEECCCCST------TCCCEEEE
T ss_pred EEEEEEeccC---------CCCCCccEEcCHHHHHHHhccccccccccCCEEE-EEEEEEecCCCC------CCcEEEEE
Confidence 5899999997 7 67788888888865322 3444443 2222 374332 34577777
Q ss_pred ec-CCccccc
Q 036568 151 AN-TFQYPLS 159 (168)
Q Consensus 151 Aw-s~~f~L~ 159 (168)
-. +.+|-|.
T Consensus 153 ~~Gs~~~~~a 162 (245)
T 2hcz_X 153 EKGCNPNYLA 162 (245)
T ss_dssp CCCCSSSCCC
T ss_pred cCCCCcceEE
Confidence 52 3344443
No 10
>3iag_C Recombining binding protein suppressor of hairless; protein-DNA complex, signaling, transcription, notch, activator, alternative splicing; HET: XYL; 2.00A {Mus musculus} PDB: 3brg_C* 3nbn_A 2f8x_C 3v79_C*
Probab=10.30 E-value=3.3e+02 Score=24.71 Aligned_cols=70 Identities=10% Similarity=0.130 Sum_probs=47.6
Q ss_pred cEEEEEecccccCC----CCCCCCcccccEEEEc--CCcccceeeCCcceeeecCCceEecCCccCCCCCeeEEEEecCC
Q 036568 81 ACTVQILNTCTCVS----ESESGGCSICNIHVNC--GWFSSARLVNPQVFRRIHYDDCLVNDGEALPPGQALSFQYANTF 154 (168)
Q Consensus 81 ey~VtI~N~C~~~~----~~~~~~C~~snV~L~C--ggF~Sa~~VDP~vfrrl~~ddCLVNdG~pI~~g~~VsF~YAws~ 154 (168)
.|++.+...-.+.. ..+..-|.=+-|.|-| .|.++ +|-++|+++.+.=++.++.|+..-..+.|+-....
T Consensus 193 aF~I~lvd~~~~~~~~~~~~~g~I~YGs~V~Lv~~~TGv~s----ppliIRKVdk~~~~l~~~dpVSQLhK~Afq~~d~~ 268 (422)
T 3iag_C 193 AFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMAL----PRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTE 268 (422)
T ss_dssp CEEEEECCTTCCSSSCCCCBCSBCBTTCEEEEEETTTCCBC----CCEEEEEEETTEEESSCCSBCBTTCEEEEEETTSS
T ss_pred cEEEEEecCcccccccCCcCCCeEEeCCEEEEEECCCcccC----CceEEEEEcCCcEecCCCCchhhhhhheeEecCCc
Confidence 46666666553200 0012334556688888 45544 68899999877777899999999999999986643
Done!