Query 036568
Match_columns 168
No_of_seqs 103 out of 136
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 04:47:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036568.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036568hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1b4ra_ b.1.3.1 (A:) Polycyste 28.7 14 0.001 23.8 2.1 12 138-149 8-19 (80)
2 d3brda3 b.42.7.1 (A:381-541) D 17.0 82 0.006 23.2 4.6 52 101-156 70-127 (161)
3 d1cf1a2 b.1.18.11 (A:183-393) 16.6 98 0.0072 22.7 5.1 76 64-151 22-97 (211)
4 d1cr5a2 d.31.1.1 (A:108-210) C 14.3 40 0.0029 22.7 2.0 28 136-164 41-68 (103)
5 d1neia_ d.253.1.1 (A:) Hypothe 13.4 43 0.0032 21.1 1.8 14 78-91 2-15 (60)
6 d1v43a2 b.40.6.3 (A:304-373) H 13.3 82 0.006 18.5 3.1 29 132-160 35-63 (70)
7 d1gl1i_ g.4.1.1 (I:) Protease 10.8 23 0.0017 20.1 -0.2 16 88-103 14-29 (34)
8 d1qcsa2 d.31.1.1 (A:86-201) C- 10.6 57 0.0042 22.4 1.9 29 136-165 41-69 (116)
9 d2gu3a1 d.17.1.6 (A:99-161) Un 10.3 58 0.0042 20.3 1.7 23 67-90 20-42 (63)
10 d1twfi2 g.41.3.1 (I:50-121) RB 9.0 2.3E+02 0.017 17.7 5.3 31 54-84 23-53 (72)
No 1
>d1b4ra_ b.1.3.1 (A:) Polycystein-1, PKD-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.72 E-value=14 Score=23.81 Aligned_cols=12 Identities=33% Similarity=0.567 Sum_probs=5.5
Q ss_pred ccCCCCCeeEEE
Q 036568 138 EALPPGQALSFQ 149 (168)
Q Consensus 138 ~pI~~g~~VsF~ 149 (168)
.||..|+++.|.
T Consensus 8 ~p~~~G~~v~F~ 19 (80)
T d1b4ra_ 8 GPLASGQLAAFH 19 (80)
T ss_dssp SCCBSSEEEEEE
T ss_pred CCccCCCeEEEE
Confidence 344444444443
No 2
>d3brda3 b.42.7.1 (A:381-541) DNA-binding protein LAG-1 (CSL) {Caenorhabditis elegans [TaxId: 6239]}
Probab=17.02 E-value=82 Score=23.22 Aligned_cols=52 Identities=10% Similarity=0.127 Sum_probs=37.5
Q ss_pred cccccEEEEc--CCcccceeeCCcceeeecCCceEecC---CccCCCCCeeEEEEecC-Ccc
Q 036568 101 CSICNIHVNC--GWFSSARLVNPQVFRRIHYDDCLVND---GEALPPGQALSFQYANT-FQY 156 (168)
Q Consensus 101 C~~snV~L~C--ggF~Sa~~VDP~vfrrl~~ddCLVNd---G~pI~~g~~VsF~YAws-~~f 156 (168)
|.=+-|+|-| .|.+| +|-++|+++.+.=++.+ ++|+..-..+-|+--.+ ++|
T Consensus 70 ~Ygs~V~Lv~~~TGv~s----ppLiIRKVdk~~~~ld~~~~ddpVSQLhK~Af~~~dt~~~y 127 (161)
T d3brda3 70 YYGSVVKLVDSVTGIAL----PRLRIRKVDKQQVILDASCSEEPVSQLHKCAFQMIDNELVY 127 (161)
T ss_dssp BTTCEEEEEETTTCCBC----CCEEEEEEETTEEECCTTGGGSBCBTTEEEEEEESSCTTEE
T ss_pred EeCCEEEEEEcCCCccC----CCEEEEEEcCCeEeccCccCCCcHHhhheeEEEcCCCCceE
Confidence 4445578888 56666 69999999877655665 47999988999977554 444
No 3
>d1cf1a2 b.1.18.11 (A:183-393) Arrestin {Cow (Bos taurus), visual arrestin [TaxId: 9913]}
Probab=16.61 E-value=98 Score=22.70 Aligned_cols=76 Identities=13% Similarity=0.151 Sum_probs=46.7
Q ss_pred ceeEEecccCCCCCCcccEEEEEecccccCCCCCCCCcccccEEEEcCCcccceeeCCcceeeecCCceEecCCccCCCC
Q 036568 64 DIVIYQGSTAPLPNGIPACTVQILNTCTCVSESESGGCSICNIHVNCGWFSSARLVNPQVFRRIHYDDCLVNDGEALPPG 143 (168)
Q Consensus 64 DI~V~Q~~TG~~v~G~Pey~VtI~N~C~~~~~~~~~~C~~snV~L~CggF~Sa~~VDP~vfrrl~~ddCLVNdG~pI~~g 143 (168)
.|.+.=.+.|-.++-.-...|+|.|.+. =.+..|++.=--......-.|..+++- ......+++++++
T Consensus 22 ~l~~~ldr~~Y~~Ge~I~v~v~i~N~s~---------~~v~~i~~~l~Q~~~~~~~s~~~~~~~---Va~~e~~~~~~~~ 89 (211)
T d1cf1a2 22 RLAVSLSKEIYYHGEPIPVTVAVTNSTE---------KTVKKIKVLVEQVTNVVLYSSDYYIKT---VAAEEAQEKVPPN 89 (211)
T ss_dssp EEEEEESCSEEETTCCEEEEEEEEECSS---------SCEEEEEEEEEEEEEECSSSCCEEEEE---EEEEEESCCBCTT
T ss_pred EEEEEECCceEcCCCEEEEEEEEEcCCC---------cceeeEEEEEEEEEEEEEecCCceEEE---EEEEEecCccCCC
Confidence 3555556666544333368999999875 467777766555555555556666642 2234456677788
Q ss_pred CeeEEEEe
Q 036568 144 QALSFQYA 151 (168)
Q Consensus 144 ~~VsF~YA 151 (168)
++.+.+|+
T Consensus 90 ~t~~k~~~ 97 (211)
T d1cf1a2 90 SSLTKTLT 97 (211)
T ss_dssp EEEEEEEE
T ss_pred cceEEEEE
Confidence 77666655
No 4
>d1cr5a2 d.31.1.1 (A:108-210) C-terminal domain of NSF-N, NSF-Nc {Baker's yeast (Saccharomyces cerevisiae), sec18p [TaxId: 4932]}
Probab=14.30 E-value=40 Score=22.75 Aligned_cols=28 Identities=18% Similarity=0.426 Sum_probs=23.2
Q ss_pred CCccCCCCCeeEEEEecCCccccccceee
Q 036568 136 DGEALPPGQALSFQYANTFQYPLSVSSVV 164 (168)
Q Consensus 136 dG~pI~~g~~VsF~YAws~~f~L~~ssv~ 164 (168)
.|+++.+|+.+-|.|-. ..|.|.+.++.
T Consensus 41 ~~Q~ft~gQ~l~f~f~~-~~l~l~Vk~v~ 68 (103)
T d1cr5a2 41 ESQIFSPTQYLIMEFQG-HFFDLKIRNVQ 68 (103)
T ss_dssp TTCEECTTCEEEEEETT-EEEEEEEEEEE
T ss_pred cCCCCCCCcEEEEEECC-cEEEEEEEEEE
Confidence 57999999999999977 78888875554
No 5
>d1neia_ d.253.1.1 (A:) Hypothetical protein YoaG {Escherichia coli [TaxId: 562]}
Probab=13.38 E-value=43 Score=21.10 Aligned_cols=14 Identities=29% Similarity=0.418 Sum_probs=12.3
Q ss_pred CcccEEEEEecccc
Q 036568 78 GIPACTVQILNTCT 91 (168)
Q Consensus 78 G~Pey~VtI~N~C~ 91 (168)
|+-.|.|||+|+-.
T Consensus 2 gk~~~~lTvTNnnN 15 (60)
T d1neia_ 2 GKATYTVTVTNNSN 15 (60)
T ss_dssp CCCCEEEEEEETTT
T ss_pred CcceEEEEEEeCCC
Confidence 67889999999885
No 6
>d1v43a2 b.40.6.3 (A:304-373) Hypothetical protein PH0022, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=13.27 E-value=82 Score=18.45 Aligned_cols=29 Identities=7% Similarity=0.074 Sum_probs=24.0
Q ss_pred eEecCCccCCCCCeeEEEEecCCcccccc
Q 036568 132 CLVNDGEALPPGQALSFQYANTFQYPLSV 160 (168)
Q Consensus 132 CLVNdG~pI~~g~~VsF~YAws~~f~L~~ 160 (168)
..+....++..|++|.|....+..+-|.+
T Consensus 35 ~~~~~~~~~~~g~~i~l~~d~~~~~lFD~ 63 (70)
T d1v43a2 35 VKLPGHIPIEPGREVKVIMDLDMIHVFDK 63 (70)
T ss_dssp EEEESCCCCCTTCEEEEEEEGGGCEEEET
T ss_pred EEECCCCCCCCCCEEEEEECcccEEEEcc
Confidence 45666678889999999999998888876
No 7
>d1gl1i_ g.4.1.1 (I:) Protease inhibitor PMP-C {Migratory locust (Locusta migratoria) [TaxId: 7004]}
Probab=10.76 E-value=23 Score=20.13 Aligned_cols=16 Identities=38% Similarity=1.045 Sum_probs=11.6
Q ss_pred cccccCCCCCCCCccc
Q 036568 88 NTCTCVSESESGGCSI 103 (168)
Q Consensus 88 N~C~~~~~~~~~~C~~ 103 (168)
|+|.++|.|.+..|..
T Consensus 14 ntcrc~s~gksaactl 29 (34)
T d1gl1i_ 14 NTCRCGADGKSAACTL 29 (34)
T ss_dssp SEEEECTTSSCEEEEC
T ss_pred ceeeecCCCcccceee
Confidence 6777777777776764
No 8
>d1qcsa2 d.31.1.1 (A:86-201) C-terminal domain of NSF-N, NSF-Nc {Hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=10.64 E-value=57 Score=22.38 Aligned_cols=29 Identities=24% Similarity=0.458 Sum_probs=24.2
Q ss_pred CCccCCCCCeeEEEEecCCccccccceeee
Q 036568 136 DGEALPPGQALSFQYANTFQYPLSVSSVVC 165 (168)
Q Consensus 136 dG~pI~~g~~VsF~YAws~~f~L~~ssv~C 165 (168)
.|+++.+|+.+-|.|-. ..|.|.+.++.+
T Consensus 41 ~~Qift~gQ~l~f~f~~-~~l~l~Vk~v~~ 69 (116)
T d1qcsa2 41 NNQAFSVGQQLVFSFND-KLFGLLVKDIEA 69 (116)
T ss_dssp TTCEEETTCEEEEEETT-EEEEEEEEEEEE
T ss_pred CCCCcCCCcEEEEEeCC-cEEEEEEEEEEE
Confidence 47999999999999966 888888866654
No 9
>d2gu3a1 d.17.1.6 (A:99-161) Uncharacterized protein YpmB {Bacillus subtilis [TaxId: 1423]}
Probab=10.29 E-value=58 Score=20.34 Aligned_cols=23 Identities=13% Similarity=-0.028 Sum_probs=16.3
Q ss_pred EEecccCCCCCCcccEEEEEeccc
Q 036568 67 IYQGSTAPLPNGIPACTVQILNTC 90 (168)
Q Consensus 67 V~Q~~TG~~v~G~Pey~VtI~N~C 90 (168)
|...+-| +-+|+|.|+|+-.|.=
T Consensus 20 i~~v~LG-~~~~~pvWEVtY~~~~ 42 (63)
T d2gu3a1 20 QKEVHLA-REGNVLLWEVTYLDKE 42 (63)
T ss_dssp EEEEEEE-EETTEEEEEEEEECTT
T ss_pred eeEEeee-eECCEEEEEEEEEeCC
Confidence 3444444 3579999999999865
No 10
>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.01 E-value=2.3e+02 Score=17.69 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=25.7
Q ss_pred CCCCCCCCCCceeEEecccCCCCCCcccEEE
Q 036568 54 NRIGTACSKDDIVIYQGSTAPLPNGIPACTV 84 (168)
Q Consensus 54 ~~~~~~Cs~sDI~V~Q~~TG~~v~G~Pey~V 84 (168)
...+..|.......+|.++...-.|+..|-+
T Consensus 23 ~~~CpkCg~~~a~~~q~QtRsaDE~mT~Fy~ 53 (72)
T d1twfi2 23 DRECPKCHSRENVFFQSQQRRKDTSMVLFFV 53 (72)
T ss_dssp CCCCTTTCCCCEEEEECSSCCTTCCCCEEEE
T ss_pred CCCCCCCCCCeEEEEEeecCccCCCceEEEE
Confidence 4567889999999999999876678877776
Done!