BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036571
(251 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I33|A Chain A, The Structure Of The Class C Acid Phosphatase From
Bacillus Anthracis
pdb|2I33|B Chain B, The Structure Of The Class C Acid Phosphatase From
Bacillus Anthracis
pdb|2I34|A Chain A, The Crystal Structure Of Class C Acid Phosphatase From
Bacillus Anthracis With Tungstate Bound
pdb|2I34|B Chain B, The Crystal Structure Of Class C Acid Phosphatase From
Bacillus Anthracis With Tungstate Bound
Length = 258
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 33/168 (19%)
Query: 103 IFDIDETSLSNLPYYA---KHGFGVEPFNSTLFNEWVNKGEAPXXXXXXXXXXXXXXXGI 159
+ D+DET L N P+ A K G G P+ +++W+NK EA G+
Sbjct: 63 VLDLDETVLDNSPHQAMSVKTGKGY-PYK---WDDWINKAEAEALPGSIDFLKYTESKGV 118
Query: 160 KIVFLTGRPEDQRSVTENNLKNVGF--YTWENLILKGSSYSGETAVVYKSSERKRLEKKG 217
I +++ R +Q T NL+ VG T E+++L+ G+ +R+ L +
Sbjct: 119 DIYYISNRKTNQLDATIKNLERVGAPQATKEHILLQDPKEKGK-------EKRRELVSQT 171
Query: 218 YRIIGNIGDQWSDLLGTNA-----------------GNRTFKLPDPMY 248
+ I+ GD SD G + G + P+PMY
Sbjct: 172 HDIVLFFGDNLSDFTGFDGKSVKDRNQAVTDSKAQFGEKFIIFPNPMY 219
>pdb|3OCY|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Complexed With Inorganic Phosphate
pdb|3OCZ|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Complexed With The Inhibitor Adenosine
5-O-Thiomonophosphate
Length = 262
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 11/143 (7%)
Query: 105 DIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPXXXXXXXXXXXXXXXGIKIVFL 164
D+DET L N PY +PF+ + WV+ ++ K+ ++
Sbjct: 64 DLDETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHNGKVFYV 123
Query: 165 TGRPED-QRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRIIGN 223
T R + ++S T +++K +GF E S++ + K++ +EK+GY I+
Sbjct: 124 TNRKDSTEKSGTIDDMKRLGFNGVEE-----SAFYLKKDKSAKAARFAEIEKQGYEIVLY 178
Query: 224 IGDQWSDLLGT-----NAGNRTF 241
+GD D T NA R F
Sbjct: 179 VGDNLDDFGNTVYGKLNADRRAF 201
>pdb|3ET4|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase
pdb|3ET5|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Complexed With Tungstate
Length = 255
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 11/143 (7%)
Query: 105 DIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPXXXXXXXXXXXXXXXGIKIVFL 164
D+DET L N PY +PF+ + WV+ ++ K+ ++
Sbjct: 65 DLDETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHKGKVFYV 124
Query: 165 TGRPE-DQRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRIIGN 223
T R + +++ T +++K +GF E S++ + K++ +EK+GY I+
Sbjct: 125 TNRKDSSEKAGTIDDMKRLGFNGVEE-----SAFYLKKDKSAKAARFAEIEKQGYEIVLY 179
Query: 224 IGDQWSDLLGT-----NAGNRTF 241
+GD D T NA R F
Sbjct: 180 VGDNLDDFGNTVYGKLNADRRAF 202
>pdb|3SF0|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Mutant D64n Complexed With 5'amp
Length = 262
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 11/143 (7%)
Query: 105 DIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPXXXXXXXXXXXXXXXGIKIVFL 164
++DET L N PY +PF+ + WV+ ++ K+ ++
Sbjct: 64 NLDETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHNGKVFYV 123
Query: 165 TGRPED-QRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRIIGN 223
T R + ++S T +++K +GF E S++ + K++ +EK+GY I+
Sbjct: 124 TNRKDSTEKSGTIDDMKRLGFNGVEE-----SAFYLKKDKSAKAARFAEIEKQGYEIVLY 178
Query: 224 IGDQWSDLLGT-----NAGNRTF 241
+GD D T NA R F
Sbjct: 179 VGDNLDDFGNTVYGKLNADRRAF 201
>pdb|3OCU|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Mutant D66n Complexed With Nmn
pdb|3OCV|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Mutant D66n Complexed With 5'-Amp
pdb|3OCW|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Mutant D66n Complexed With 3'-Amp
pdb|3OCX|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Mutant D66n Complexed With 2'-Amp
Length = 262
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 11/143 (7%)
Query: 105 DIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPXXXXXXXXXXXXXXXGIKIVFL 164
D++ET L N PY +PF+ + WV+ ++ K+ ++
Sbjct: 64 DLNETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHNGKVFYV 123
Query: 165 TGRPED-QRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRIIGN 223
T R + ++S T +++K +GF E S++ + K++ +EK+GY I+
Sbjct: 124 TNRKDSTEKSGTIDDMKRLGFNGVEE-----SAFYLKKDKSAKAARFAEIEKQGYEIVLY 178
Query: 224 IGDQWSDLLGT-----NAGNRTF 241
+GD D T NA R F
Sbjct: 179 VGDNLDDFGNTVYGKLNADRRAF 201
>pdb|3PCT|A Chain A, Structure Of The Class C Acid Phosphatase From Pasteurella
Multocida
pdb|3PCT|B Chain B, Structure Of The Class C Acid Phosphatase From Pasteurella
Multocida
pdb|3PCT|C Chain C, Structure Of The Class C Acid Phosphatase From Pasteurella
Multocida
Length = 260
Score = 34.7 bits (78), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 15/141 (10%)
Query: 105 DIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPXXXXXXXXXXXXXXXGIKIVFL 164
D+DET + N Y + F+ + +WV+ ++ G + F+
Sbjct: 64 DLDETMIDNSAYAGWQVQSGQGFSPKTWTKWVDARQSAAIPGAVEFSNYVNANGGTMFFV 123
Query: 165 TGRPED-QRSVTENNLKNVGF--YTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRII 221
+ R +D +++ T +++K +GF + L+LK + KS K++E GY I+
Sbjct: 124 SNRRDDVEKAGTVDDMKRLGFTGVNDKTLLLKKDKSN-------KSVRFKQVEDMGYDIV 176
Query: 222 GNIGDQWSDLLGTNAGNRTFK 242
+GD +D G+ T+K
Sbjct: 177 LFVGDNLNDF-----GDATYK 192
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,951,246
Number of Sequences: 62578
Number of extensions: 327099
Number of successful extensions: 760
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 751
Number of HSP's gapped (non-prelim): 8
length of query: 251
length of database: 14,973,337
effective HSP length: 96
effective length of query: 155
effective length of database: 8,965,849
effective search space: 1389706595
effective search space used: 1389706595
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)