Query 036571
Match_columns 251
No_of_seqs 330 out of 1484
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 03:19:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036571.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036571hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01675 plant-AP plant acid 100.0 5.2E-73 1.1E-77 489.2 21.0 218 34-251 12-229 (229)
2 TIGR01680 Veg_Stor_Prot vegeta 100.0 5.7E-71 1.2E-75 483.7 21.2 229 19-249 22-254 (275)
3 PF03767 Acid_phosphat_B: HAD 100.0 7.5E-55 1.6E-59 378.7 6.2 212 35-250 12-228 (229)
4 TIGR01533 lipo_e_P4 5'-nucleot 100.0 7.5E-35 1.6E-39 257.7 18.6 179 63-249 38-238 (266)
5 COG2503 Predicted secreted aci 100.0 1.3E-30 2.7E-35 223.0 14.3 165 77-249 52-242 (274)
6 PRK11009 aphA acid phosphatase 99.9 1.2E-22 2.6E-27 177.3 12.1 143 97-248 61-218 (237)
7 TIGR01672 AphA HAD superfamily 99.8 3E-19 6.5E-24 156.0 13.7 139 96-243 60-210 (237)
8 COG0546 Gph Predicted phosphat 99.6 3E-15 6.6E-20 129.1 12.3 96 141-242 88-187 (220)
9 PRK14988 GMP/IMP nucleotidase; 99.6 2E-15 4.4E-20 130.6 10.4 102 140-247 91-197 (224)
10 PLN02770 haloacid dehalogenase 99.6 6.6E-15 1.4E-19 129.2 12.9 101 140-244 106-208 (248)
11 PRK13226 phosphoglycolate phos 99.6 7.3E-15 1.6E-19 127.3 13.0 100 140-243 93-194 (229)
12 COG0637 Predicted phosphatase/ 99.6 3.2E-15 7E-20 129.3 10.7 142 99-246 2-188 (221)
13 PRK13288 pyrophosphatase PpaX; 99.6 7.5E-15 1.6E-19 125.4 12.8 141 99-243 3-181 (214)
14 TIGR03351 PhnX-like phosphonat 99.6 5.8E-15 1.3E-19 126.4 11.9 100 140-245 85-192 (220)
15 TIGR01422 phosphonatase phosph 99.6 6.8E-15 1.5E-19 129.0 11.8 100 140-245 97-202 (253)
16 PLN02575 haloacid dehalogenase 99.6 1.1E-14 2.3E-19 135.0 12.9 102 140-245 214-317 (381)
17 PLN03243 haloacid dehalogenase 99.6 1.2E-14 2.6E-19 128.8 12.4 99 140-245 107-210 (260)
18 PRK11587 putative phosphatase; 99.6 1.7E-14 3.6E-19 123.9 12.2 100 139-245 80-183 (218)
19 PRK13225 phosphoglycolate phos 99.6 1.9E-14 4.1E-19 128.4 12.1 140 97-244 60-239 (273)
20 PRK10826 2-deoxyglucose-6-phos 99.6 4.5E-14 9.7E-19 121.4 13.5 101 140-246 90-194 (222)
21 TIGR01449 PGP_bact 2-phosphogl 99.6 3.1E-14 6.8E-19 120.9 12.0 98 140-243 83-184 (213)
22 TIGR01990 bPGM beta-phosphoglu 99.6 2.6E-14 5.7E-19 118.7 10.5 95 141-243 86-184 (185)
23 TIGR01454 AHBA_synth_RP 3-amin 99.6 4.5E-14 9.7E-19 119.8 12.1 99 139-243 72-174 (205)
24 TIGR01428 HAD_type_II 2-haloal 99.6 6.5E-14 1.4E-18 118.1 13.0 102 140-245 90-193 (198)
25 TIGR02253 CTE7 HAD superfamily 99.6 4.1E-14 8.8E-19 121.0 11.6 101 140-246 92-197 (221)
26 PRK13223 phosphoglycolate phos 99.5 1.5E-13 3.3E-18 122.3 13.6 99 141-245 100-202 (272)
27 PRK13478 phosphonoacetaldehyde 99.5 1E-13 2.2E-18 122.7 12.4 99 140-244 99-203 (267)
28 TIGR01548 HAD-SF-IA-hyp1 haloa 99.5 1.1E-13 2.4E-18 117.0 10.8 91 142-236 106-196 (197)
29 PRK06698 bifunctional 5'-methy 99.5 1.2E-13 2.6E-18 131.4 12.2 97 140-244 328-427 (459)
30 PLN02940 riboflavin kinase 99.5 1.3E-13 2.8E-18 128.5 11.9 146 96-245 8-195 (382)
31 PHA02530 pseT polynucleotide k 99.5 1.6E-13 3.6E-18 123.0 11.8 133 96-243 155-295 (300)
32 PRK10725 fructose-1-P/6-phosph 99.5 2.5E-13 5.5E-18 113.2 11.3 99 140-244 86-186 (188)
33 TIGR01656 Histidinol-ppas hist 99.5 1.2E-13 2.7E-18 111.9 9.0 128 100-245 1-146 (147)
34 TIGR02009 PGMB-YQAB-SF beta-ph 99.5 2.3E-13 4.9E-18 113.0 10.8 95 140-242 86-184 (185)
35 PRK13222 phosphoglycolate phos 99.5 8.9E-13 1.9E-17 112.8 13.9 101 140-244 91-193 (226)
36 PLN02779 haloacid dehalogenase 99.5 7.1E-13 1.5E-17 118.9 13.6 101 141-246 143-248 (286)
37 TIGR01662 HAD-SF-IIIA HAD-supe 99.5 2.5E-13 5.4E-18 107.6 9.0 123 100-243 1-130 (132)
38 PRK09449 dUMP phosphatase; Pro 99.5 6.3E-13 1.4E-17 114.0 11.8 97 141-244 94-196 (224)
39 TIGR01993 Pyr-5-nucltdase pyri 99.4 6.1E-13 1.3E-17 111.0 10.4 96 140-242 82-183 (184)
40 cd01427 HAD_like Haloacid deha 99.4 5.6E-13 1.2E-17 103.2 7.8 120 101-242 1-138 (139)
41 TIGR02252 DREG-2 REG-2-like, H 99.4 1E-12 2.3E-17 111.0 10.0 94 141-241 104-202 (203)
42 TIGR01549 HAD-SF-IA-v1 haloaci 99.4 6.2E-13 1.4E-17 107.5 8.1 129 101-235 1-151 (154)
43 TIGR01509 HAD-SF-IA-v3 haloaci 99.4 2E-12 4.4E-17 106.7 10.7 97 141-242 84-182 (183)
44 PRK09456 ?-D-glucose-1-phospha 99.4 1.5E-12 3.3E-17 110.2 9.8 102 141-246 83-187 (199)
45 PF13419 HAD_2: Haloacid dehal 99.4 4.8E-13 1E-17 108.4 6.1 100 139-242 74-175 (176)
46 PRK10563 6-phosphogluconate ph 99.4 3.1E-12 6.8E-17 109.6 10.4 97 140-243 86-185 (221)
47 TIGR02247 HAD-1A3-hyp Epoxide 99.4 2.5E-12 5.4E-17 109.5 9.4 105 140-246 92-198 (211)
48 TIGR01664 DNA-3'-Pase DNA 3'-p 99.4 2.8E-12 6.1E-17 106.4 9.3 126 99-239 13-157 (166)
49 TIGR02254 YjjG/YfnB HAD superf 99.3 7.9E-12 1.7E-16 106.6 11.2 96 141-243 96-197 (224)
50 TIGR01261 hisB_Nterm histidino 99.3 3.2E-12 6.9E-17 105.6 8.1 126 100-244 2-147 (161)
51 PHA02597 30.2 hypothetical pro 99.3 1.3E-11 2.8E-16 104.1 11.8 136 99-243 2-173 (197)
52 PRK08942 D,D-heptose 1,7-bisph 99.3 5.5E-12 1.2E-16 105.4 9.1 127 99-244 3-147 (181)
53 COG2179 Predicted hydrolase of 99.3 1.4E-11 3E-16 100.9 11.0 109 96-243 25-137 (175)
54 PLN02954 phosphoserine phospha 99.3 2.4E-11 5.2E-16 104.2 13.0 139 98-239 11-190 (224)
55 TIGR00213 GmhB_yaeD D,D-heptos 99.3 5E-12 1.1E-16 105.3 8.2 118 100-240 2-146 (176)
56 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.3 1.6E-11 3.4E-16 103.1 11.2 105 140-247 78-193 (201)
57 TIGR01689 EcbF-BcbF capsule bi 99.3 1.4E-11 3.1E-16 97.7 9.7 76 99-195 1-88 (126)
58 smart00775 LNS2 LNS2 domain. T 99.3 2.3E-11 5.1E-16 100.0 11.3 127 101-243 1-148 (157)
59 PLN02919 haloacid dehalogenase 99.3 2.3E-11 4.9E-16 126.1 13.8 100 142-245 161-263 (1057)
60 TIGR01489 DKMTPPase-SF 2,3-dik 99.3 4.4E-11 9.5E-16 99.2 12.5 99 140-241 70-185 (188)
61 PRK06769 hypothetical protein; 99.3 4.1E-12 8.8E-17 105.9 6.2 122 98-243 3-136 (173)
62 PRK13582 thrH phosphoserine ph 99.3 1.6E-11 3.5E-16 103.8 9.7 91 139-234 65-160 (205)
63 PRK10748 flavin mononucleotide 99.3 9E-12 2E-16 108.6 7.9 91 141-244 112-208 (238)
64 TIGR00338 serB phosphoserine p 99.3 5.4E-11 1.2E-15 101.7 12.0 139 98-245 13-196 (219)
65 COG3700 AphA Acid phosphatase 99.3 4.3E-11 9.2E-16 99.1 10.2 147 95-248 59-218 (237)
66 TIGR01685 MDP-1 magnesium-depe 99.2 1.7E-11 3.7E-16 102.4 7.0 136 99-245 2-158 (174)
67 PF08235 LNS2: LNS2 (Lipin/Ned 99.2 6E-11 1.3E-15 97.2 8.7 126 101-243 1-148 (157)
68 PF13344 Hydrolase_6: Haloacid 99.2 7E-11 1.5E-15 90.2 7.9 64 102-192 1-64 (101)
69 COG1011 Predicted hydrolase (H 99.2 1.9E-10 4.2E-15 98.4 11.3 102 140-246 97-201 (229)
70 PRK09552 mtnX 2-hydroxy-3-keto 99.2 2E-10 4.4E-15 98.7 10.7 98 139-242 71-184 (219)
71 TIGR01670 YrbI-phosphatas 3-de 99.1 1.2E-10 2.6E-15 95.3 7.1 117 99-245 1-119 (154)
72 TIGR01681 HAD-SF-IIIC HAD-supe 99.1 1.3E-10 2.8E-15 92.2 7.1 112 100-234 1-124 (128)
73 KOG2914 Predicted haloacid-hal 99.1 1.5E-10 3.3E-15 100.2 7.7 147 97-246 8-198 (222)
74 TIGR01493 HAD-SF-IA-v2 Haloaci 99.1 1.2E-10 2.6E-15 96.0 5.3 85 140-235 88-173 (175)
75 PLN02811 hydrolase 99.1 8.4E-10 1.8E-14 94.9 10.5 105 140-246 76-186 (220)
76 PRK05446 imidazole glycerol-ph 99.1 7.6E-10 1.6E-14 102.1 10.6 131 98-248 1-151 (354)
77 TIGR02726 phenyl_P_delta pheny 99.1 1.6E-10 3.4E-15 96.2 5.5 118 98-245 6-125 (169)
78 smart00577 CPDc catalytic doma 99.0 2.8E-10 6.1E-15 92.4 5.0 129 98-235 1-132 (148)
79 TIGR01668 YqeG_hyp_ppase HAD s 99.0 2E-09 4.3E-14 89.5 10.0 109 97-243 23-135 (170)
80 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.0 2.2E-09 4.8E-14 93.8 10.2 101 97-232 6-109 (242)
81 PLN02645 phosphoglycolate phos 99.0 1.3E-09 2.9E-14 98.8 8.7 70 98-194 27-96 (311)
82 TIGR02137 HSK-PSP phosphoserin 99.0 1.1E-08 2.3E-13 87.6 12.2 91 140-235 66-161 (203)
83 PRK09484 3-deoxy-D-manno-octul 98.9 6.7E-10 1.5E-14 93.3 4.3 112 98-239 20-134 (183)
84 TIGR03333 salvage_mtnX 2-hydro 98.9 1.2E-08 2.6E-13 87.4 12.1 99 140-242 68-180 (214)
85 TIGR01684 viral_ppase viral ph 98.9 5.2E-09 1.1E-13 93.6 9.6 73 97-196 124-197 (301)
86 TIGR01488 HAD-SF-IB Haloacid D 98.9 1.1E-08 2.5E-13 84.0 11.1 94 139-235 70-175 (177)
87 TIGR01490 HAD-SF-IB-hyp1 HAD-s 98.9 1.5E-08 3.3E-13 85.4 12.0 103 141-246 86-200 (202)
88 PRK10444 UMP phosphatase; Prov 98.9 5.1E-09 1.1E-13 92.2 9.2 94 99-219 1-103 (248)
89 TIGR01458 HAD-SF-IIA-hyp3 HAD- 98.9 4.8E-09 1.1E-13 92.7 8.7 65 100-187 2-66 (257)
90 TIGR01452 PGP_euk phosphoglyco 98.9 7.6E-09 1.6E-13 92.4 9.1 67 99-192 2-68 (279)
91 TIGR01663 PNK-3'Pase polynucle 98.9 1.2E-08 2.5E-13 98.6 10.3 122 97-234 166-300 (526)
92 COG0647 NagD Predicted sugar p 98.9 6.7E-09 1.4E-13 92.4 7.9 99 97-222 6-115 (269)
93 PRK11133 serB phosphoserine ph 98.9 3.7E-08 8.1E-13 89.9 13.0 99 140-246 179-291 (322)
94 TIGR01686 FkbH FkbH-like domai 98.9 1.1E-08 2.5E-13 93.1 9.2 116 98-236 2-121 (320)
95 TIGR01457 HAD-SF-IIA-hyp2 HAD- 98.8 3.8E-08 8.2E-13 86.6 9.3 66 100-192 2-67 (249)
96 PHA03398 viral phosphatase sup 98.7 6.2E-08 1.4E-12 86.8 9.5 73 97-196 126-199 (303)
97 PRK11590 hypothetical protein; 98.7 2.8E-07 6E-12 79.0 12.6 103 141-246 94-205 (211)
98 PRK08238 hypothetical protein; 98.7 1.6E-07 3.4E-12 90.1 11.8 133 97-240 8-161 (479)
99 KOG1615 Phosphoserine phosphat 98.7 3.7E-07 8E-12 76.9 11.4 140 98-240 15-195 (227)
100 PF09419 PGP_phosphatase: Mito 98.7 2.6E-07 5.6E-12 76.8 10.5 118 95-246 37-166 (168)
101 PF06941 NT5C: 5' nucleotidase 98.6 1.1E-07 2.3E-12 80.3 8.2 126 102-246 5-164 (191)
102 COG0560 SerB Phosphoserine pho 98.6 4.4E-07 9.5E-12 78.2 11.9 101 141-244 76-187 (212)
103 PF06888 Put_Phosphatase: Puta 98.6 6.5E-07 1.4E-11 78.2 12.6 131 101-234 2-185 (234)
104 COG1778 Low specificity phosph 98.6 5.8E-08 1.3E-12 79.0 5.5 110 97-234 6-115 (170)
105 KOG3085 Predicted hydrolase (H 98.6 1.8E-07 4E-12 81.6 8.6 104 141-249 112-218 (237)
106 COG0241 HisB Histidinol phosph 98.6 5.2E-07 1.1E-11 75.8 10.7 122 99-243 5-148 (181)
107 TIGR01691 enolase-ppase 2,3-di 98.5 5.1E-07 1.1E-11 78.3 9.3 109 131-244 82-196 (220)
108 PRK01158 phosphoglycolate phos 98.5 4.7E-07 1E-11 77.8 7.9 59 99-186 3-61 (230)
109 PRK15126 thiamin pyrimidine py 98.5 5E-07 1.1E-11 80.0 8.2 59 99-186 2-60 (272)
110 PRK10530 pyridoxal phosphate ( 98.5 4.7E-07 1E-11 79.6 8.0 59 99-186 3-61 (272)
111 TIGR01460 HAD-SF-IIA Haloacid 98.5 3.1E-07 6.6E-12 80.2 6.6 64 102-192 1-65 (236)
112 PRK10513 sugar phosphate phosp 98.5 7.8E-07 1.7E-11 78.4 9.1 58 99-185 3-60 (270)
113 KOG3040 Predicted sugar phosph 98.5 6.4E-07 1.4E-11 76.2 8.0 101 97-235 5-106 (262)
114 PRK10976 putative hydrolase; P 98.5 5.3E-07 1.2E-11 79.4 8.0 59 99-186 2-60 (266)
115 PRK00192 mannosyl-3-phosphogly 98.5 5.4E-07 1.2E-11 80.0 8.0 60 99-187 4-63 (273)
116 TIGR01487 SPP-like sucrose-pho 98.4 7.5E-07 1.6E-11 76.1 7.6 58 99-185 1-58 (215)
117 TIGR02461 osmo_MPG_phos mannos 98.4 9.9E-07 2.1E-11 76.5 7.8 56 101-186 1-56 (225)
118 PF12710 HAD: haloacid dehalog 98.4 1.1E-06 2.5E-11 72.8 7.9 85 145-233 92-190 (192)
119 TIGR02463 MPGP_rel mannosyl-3- 98.4 1.1E-06 2.5E-11 75.2 7.7 55 102-185 2-56 (221)
120 TIGR01482 SPP-subfamily Sucros 98.4 1E-06 2.2E-11 75.4 6.9 55 102-185 1-55 (225)
121 KOG2882 p-Nitrophenyl phosphat 98.4 1.4E-06 3E-11 77.9 7.9 97 97-220 20-128 (306)
122 PRK03669 mannosyl-3-phosphogly 98.4 1.4E-06 3.1E-11 77.2 8.0 59 98-185 6-64 (271)
123 COG0561 Cof Predicted hydrolas 98.3 1.5E-06 3.1E-11 76.6 7.8 59 99-186 3-61 (264)
124 PRK12702 mannosyl-3-phosphogly 98.3 1.9E-06 4E-11 77.5 8.1 59 99-186 1-59 (302)
125 PF08282 Hydrolase_3: haloacid 98.3 1.7E-06 3.6E-11 73.9 7.5 56 102-186 1-56 (254)
126 TIGR01545 YfhB_g-proteo haloac 98.3 9.7E-06 2.1E-10 69.6 12.2 103 141-246 93-204 (210)
127 TIGR00099 Cof-subfamily Cof su 98.3 2.1E-06 4.6E-11 75.2 8.0 56 102-186 2-57 (256)
128 TIGR01486 HAD-SF-IIB-MPGP mann 98.3 1.9E-06 4.2E-11 75.6 7.6 56 102-186 2-57 (256)
129 TIGR01456 CECR5 HAD-superfamil 98.3 1.6E-06 3.4E-11 79.2 7.1 59 101-186 2-65 (321)
130 PTZ00174 phosphomannomutase; P 98.3 3.2E-06 7E-11 74.1 8.4 54 98-180 4-57 (247)
131 PLN02887 hydrolase family prot 98.2 5.8E-06 1.3E-10 81.0 8.9 59 98-185 307-365 (580)
132 TIGR01544 HAD-SF-IE haloacid d 98.2 1.4E-05 3E-10 71.6 10.5 105 128-235 107-228 (277)
133 KOG3120 Predicted haloacid deh 98.2 2E-05 4.4E-10 67.7 10.8 135 97-234 11-198 (256)
134 PF08645 PNK3P: Polynucleotide 98.2 5.1E-06 1.1E-10 68.4 6.6 108 100-228 1-128 (159)
135 TIGR02250 FCP1_euk FCP1-like p 98.1 3.9E-05 8.5E-10 63.0 11.5 142 96-248 3-155 (156)
136 TIGR02251 HIF-SF_euk Dullard-l 98.1 1.2E-05 2.5E-10 66.4 7.8 124 99-235 1-129 (162)
137 TIGR02244 HAD-IG-Ncltidse HAD 98.1 2.4E-05 5.3E-10 72.0 10.1 99 141-243 183-322 (343)
138 PF00702 Hydrolase: haloacid d 98.1 4.9E-06 1.1E-10 69.9 4.9 88 140-235 125-212 (215)
139 TIGR01484 HAD-SF-IIB HAD-super 98.0 1.7E-05 3.8E-10 66.9 7.7 52 102-181 2-53 (204)
140 COG4850 Uncharacterized conser 98.0 4.4E-05 9.6E-10 68.9 9.4 124 100-233 162-293 (373)
141 PRK14502 bifunctional mannosyl 97.9 2.9E-05 6.2E-10 76.9 8.2 61 97-186 414-474 (694)
142 PF12689 Acid_PPase: Acid Phos 97.9 5.1E-05 1.1E-09 63.2 8.4 133 99-245 3-152 (169)
143 TIGR01525 ATPase-IB_hvy heavy 97.9 3.9E-05 8.4E-10 75.0 8.9 103 97-236 362-465 (556)
144 PTZ00445 p36-lilke protein; Pr 97.9 7.3E-05 1.6E-09 64.2 9.2 166 63-246 11-207 (219)
145 PRK10187 trehalose-6-phosphate 97.9 3.2E-05 7E-10 68.7 7.1 62 99-184 14-76 (266)
146 TIGR01512 ATPase-IB2_Cd heavy 97.9 2.9E-05 6.3E-10 75.6 7.0 83 140-236 360-443 (536)
147 TIGR01485 SPP_plant-cyano sucr 97.8 4.9E-05 1.1E-09 66.5 6.9 60 101-186 3-62 (249)
148 KOG3109 Haloacid dehalogenase- 97.8 0.00022 4.7E-09 61.4 10.2 110 127-242 81-203 (244)
149 PLN02423 phosphomannomutase 97.8 7.2E-05 1.6E-09 65.7 7.3 45 97-168 4-49 (245)
150 TIGR01511 ATPase-IB1_Cu copper 97.8 0.00011 2.4E-09 72.0 9.2 82 140-236 403-484 (562)
151 COG4359 Uncharacterized conser 97.7 0.00029 6.2E-09 59.2 9.4 98 140-238 71-179 (220)
152 TIGR02471 sucr_syn_bact_C sucr 97.7 6.8E-05 1.5E-09 65.0 5.8 54 102-186 2-55 (236)
153 PF05152 DUF705: Protein of un 97.7 0.00022 4.8E-09 63.5 9.1 73 97-195 120-192 (297)
154 PF11019 DUF2608: Protein of u 97.7 0.00011 2.5E-09 64.9 7.0 89 98-186 19-125 (252)
155 COG4996 Predicted phosphatase 97.6 0.00031 6.8E-09 55.9 8.1 90 100-196 1-92 (164)
156 TIGR01522 ATPase-IIA2_Ca golgi 97.5 0.00033 7.2E-09 72.1 8.5 92 140-235 526-634 (884)
157 COG5083 SMP2 Uncharacterized p 97.5 0.00034 7.3E-09 65.6 7.5 122 97-234 373-510 (580)
158 PLN03017 trehalose-phosphatase 97.4 0.00068 1.5E-08 62.9 8.5 58 96-178 108-165 (366)
159 KOG2116 Protein involved in pl 97.4 0.00063 1.4E-08 66.5 8.3 128 100-243 531-679 (738)
160 TIGR01459 HAD-SF-IIA-hyp4 HAD- 97.4 6.4E-05 1.4E-09 65.6 1.3 96 143-242 139-239 (242)
161 PLN02151 trehalose-phosphatase 97.2 0.001 2.2E-08 61.5 7.7 61 95-180 94-154 (354)
162 PRK14501 putative bifunctional 97.2 0.0007 1.5E-08 68.3 6.9 63 97-183 490-553 (726)
163 PRK11033 zntA zinc/cadmium/mer 97.2 0.0014 3E-08 66.4 8.4 81 140-236 566-646 (741)
164 TIGR00685 T6PP trehalose-phosp 97.1 0.00084 1.8E-08 58.7 5.8 50 98-168 2-52 (244)
165 PLN02580 trehalose-phosphatase 97.1 0.0018 3.9E-08 60.6 8.0 61 96-181 116-176 (384)
166 TIGR01452 PGP_euk phosphoglyco 97.1 0.00045 9.7E-09 61.6 3.4 98 142-243 143-246 (279)
167 COG1877 OtsB Trehalose-6-phosp 97.1 0.0016 3.5E-08 58.0 6.8 61 96-180 15-76 (266)
168 COG2217 ZntA Cation transport 97.0 0.0015 3.3E-08 65.5 7.3 80 140-233 535-614 (713)
169 PF03031 NIF: NLI interacting 97.0 0.00057 1.2E-08 55.5 3.5 119 100-233 1-121 (159)
170 PLN02382 probable sucrose-phos 97.0 0.0025 5.5E-08 60.2 8.1 65 96-186 6-70 (413)
171 KOG1618 Predicted phosphatase 97.0 0.0023 5E-08 58.0 7.1 63 97-186 33-100 (389)
172 PRK10671 copA copper exporting 97.0 0.0024 5.3E-08 65.4 8.1 82 140-235 648-729 (834)
173 TIGR01517 ATPase-IIB_Ca plasma 97.0 0.0027 5.9E-08 65.9 8.4 91 140-234 577-684 (941)
174 TIGR01497 kdpB K+-transporting 96.9 0.0044 9.6E-08 62.0 9.2 81 140-234 444-524 (675)
175 PLN02205 alpha,alpha-trehalose 96.9 0.0024 5.1E-08 65.6 7.2 59 97-181 594-653 (854)
176 PRK14010 potassium-transportin 96.9 0.0055 1.2E-07 61.4 9.2 80 140-233 439-518 (673)
177 TIGR01106 ATPase-IIC_X-K sodiu 96.8 0.0042 9E-08 65.0 8.7 91 140-234 566-699 (997)
178 COG4087 Soluble P-type ATPase 96.8 0.0045 9.7E-08 49.4 6.3 81 141-234 29-109 (152)
179 PF06189 5-nucleotidase: 5'-nu 96.8 0.0046 1E-07 54.6 7.0 126 98-244 120-258 (264)
180 COG3769 Predicted hydrolase (H 96.7 0.0046 9.9E-08 53.5 6.4 57 99-185 7-63 (274)
181 COG5663 Uncharacterized conser 96.7 0.0034 7.4E-08 52.0 5.4 129 101-244 8-161 (194)
182 TIGR01524 ATPase-IIIB_Mg magne 96.7 0.0058 1.3E-07 63.0 8.2 90 140-234 513-618 (867)
183 TIGR01647 ATPase-IIIA_H plasma 96.7 0.0032 7E-08 63.9 6.2 90 140-234 440-550 (755)
184 PRK01122 potassium-transportin 96.7 0.0091 2E-07 59.9 9.3 80 140-233 443-522 (679)
185 TIGR01116 ATPase-IIA1_Ca sarco 96.7 0.01 2.2E-07 61.5 9.9 92 140-235 535-647 (917)
186 TIGR01458 HAD-SF-IIA-hyp3 HAD- 96.6 0.00065 1.4E-08 60.0 0.9 97 143-243 121-223 (257)
187 PRK10517 magnesium-transportin 96.6 0.0056 1.2E-07 63.3 7.6 89 140-234 548-653 (902)
188 TIGR01523 ATPase-IID_K-Na pota 96.5 0.009 1.9E-07 62.8 8.1 91 140-234 644-761 (1053)
189 TIGR02245 HAD_IIID1 HAD-superf 96.4 0.0057 1.2E-07 52.1 5.3 70 92-184 14-83 (195)
190 PF05116 S6PP: Sucrose-6F-phos 96.4 0.0036 7.7E-08 55.0 3.9 65 99-193 2-66 (247)
191 PRK15122 magnesium-transportin 96.3 0.02 4.4E-07 59.3 9.8 89 140-234 548-653 (903)
192 PF02358 Trehalose_PPase: Treh 96.0 0.009 2E-07 51.8 4.4 45 103-168 1-46 (235)
193 PLN03064 alpha,alpha-trehalose 95.7 0.026 5.7E-07 58.4 7.1 73 97-184 589-662 (934)
194 PLN03063 alpha,alpha-trehalose 95.7 0.028 6.1E-07 57.5 7.2 66 97-183 505-571 (797)
195 COG0474 MgtA Cation transport 95.6 0.047 1E-06 56.7 8.5 91 140-234 545-654 (917)
196 KOG0207 Cation transport ATPas 95.4 0.059 1.3E-06 54.9 8.2 80 140-233 721-800 (951)
197 TIGR01494 ATPase_P-type ATPase 95.3 0.092 2E-06 50.7 8.8 78 140-234 345-422 (499)
198 TIGR01657 P-ATPase-V P-type AT 95.1 0.054 1.2E-06 57.1 7.3 43 140-185 654-696 (1054)
199 KOG0202 Ca2+ transporting ATPa 95.1 0.096 2.1E-06 53.1 8.4 91 140-234 582-693 (972)
200 COG3882 FkbH Predicted enzyme 94.9 0.34 7.5E-06 46.5 11.1 116 95-229 218-338 (574)
201 PF05761 5_nucleotid: 5' nucle 94.7 0.058 1.3E-06 51.6 5.6 100 143-243 184-323 (448)
202 KOG2470 Similar to IMP-GMP spe 94.3 0.065 1.4E-06 49.4 4.7 28 143-170 241-268 (510)
203 KOG2134 Polynucleotide kinase 93.3 0.16 3.5E-06 47.3 5.4 76 97-186 73-157 (422)
204 PF13242 Hydrolase_like: HAD-h 92.0 0.14 3E-06 36.2 2.6 45 199-244 3-49 (75)
205 PLN02177 glycerol-3-phosphate 91.9 2.4 5.1E-05 41.3 11.6 36 143-185 111-147 (497)
206 PLN02645 phosphoglycolate phos 91.2 0.062 1.3E-06 48.8 0.0 93 148-243 176-274 (311)
207 TIGR01457 HAD-SF-IIA-hyp2 HAD- 90.8 0.22 4.8E-06 43.6 3.1 46 198-244 176-223 (249)
208 PF09949 DUF2183: Uncharacteri 89.7 1.4 3E-05 33.5 6.3 73 160-233 1-80 (100)
209 COG4502 5'(3')-deoxyribonucleo 89.1 1 2.2E-05 36.6 5.3 55 140-195 66-123 (180)
210 KOG2961 Predicted hydrolase (H 89.0 2.9 6.3E-05 34.4 8.0 104 98-235 42-157 (190)
211 PLN02499 glycerol-3-phosphate 89.0 0.83 1.8E-05 44.2 5.7 33 150-186 101-134 (498)
212 KOG3189 Phosphomannomutase [Li 88.7 1.1 2.4E-05 38.4 5.6 43 99-168 11-53 (252)
213 PRK10530 pyridoxal phosphate ( 88.3 1.3 2.8E-05 38.6 6.1 96 142-243 137-240 (272)
214 TIGR01652 ATPase-Plipid phosph 88.0 1.6 3.5E-05 46.2 7.6 29 140-168 629-657 (1057)
215 PF10307 DUF2410: Hypothetical 87.0 6.3 0.00014 33.6 9.2 89 144-233 56-148 (197)
216 PF00702 Hydrolase: haloacid d 86.8 0.37 7.9E-06 40.0 1.7 19 99-117 1-19 (215)
217 COG2216 KdpB High-affinity K+ 85.3 3.4 7.4E-05 40.3 7.4 79 140-233 445-524 (681)
218 PRK00192 mannosyl-3-phosphogly 83.0 3.8 8.2E-05 36.1 6.4 86 152-245 142-234 (273)
219 COG4229 Predicted enolase-phos 82.7 4.1 8.9E-05 34.6 6.0 91 140-243 101-203 (229)
220 PLN03190 aminophospholipid tra 82.6 8.7 0.00019 41.3 9.9 29 140-168 724-752 (1178)
221 TIGR01460 HAD-SF-IIA Haloacid 81.6 1.2 2.6E-05 38.6 2.6 46 198-243 186-233 (236)
222 cd06591 GH31_xylosidase_XylS X 81.3 5.7 0.00012 36.2 7.1 25 142-166 63-87 (319)
223 TIGR02463 MPGP_rel mannosyl-3- 81.0 5.5 0.00012 33.6 6.5 27 218-244 195-221 (221)
224 COG5610 Predicted hydrolase (H 80.9 7 0.00015 37.7 7.5 90 142-234 99-191 (635)
225 KOG0204 Calcium transporting A 80.3 9.8 0.00021 39.3 8.7 101 130-234 624-754 (1034)
226 TIGR01456 CECR5 HAD-superfamil 79.8 2.2 4.8E-05 38.8 3.9 23 219-241 264-288 (321)
227 TIGR01487 SPP-like sucrose-pho 78.9 4 8.7E-05 34.4 5.0 68 172-246 118-191 (215)
228 PF10137 TIR-like: Predicted n 77.9 9.4 0.0002 30.1 6.4 63 160-228 1-63 (125)
229 cd06595 GH31_xylosidase_XylS-l 77.3 6.5 0.00014 35.3 6.1 71 84-167 26-96 (292)
230 cd06598 GH31_transferase_CtsZ 77.1 9.7 0.00021 34.6 7.2 44 141-184 66-109 (317)
231 PRK10444 UMP phosphatase; Prov 74.7 2.6 5.7E-05 37.0 2.8 45 198-243 172-218 (248)
232 PF06437 ISN1: IMP-specific 5' 73.0 28 0.0006 32.8 9.0 64 77-168 128-192 (408)
233 cd06592 GH31_glucosidase_KIAA1 71.4 18 0.00038 32.7 7.4 26 142-167 67-92 (303)
234 TIGR02886 spore_II_AA anti-sig 71.1 20 0.00043 26.4 6.6 59 98-188 38-96 (106)
235 PF04312 DUF460: Protein of un 69.6 8.7 0.00019 30.9 4.3 53 101-181 45-97 (138)
236 PRK13762 tRNA-modifying enzyme 69.3 36 0.00078 31.1 9.0 41 140-184 140-180 (322)
237 KOG4549 Magnesium-dependent ph 69.1 8.9 0.00019 30.6 4.2 80 98-186 4-86 (144)
238 COG0647 NagD Predicted sugar p 68.7 4.7 0.0001 36.1 3.0 43 198-241 188-232 (269)
239 KOG1605 TFIIF-interacting CTD 68.3 3.3 7.2E-05 36.9 1.9 85 95-184 85-173 (262)
240 KOG2882 p-Nitrophenyl phosphat 67.8 29 0.00063 31.6 7.8 24 145-169 168-191 (306)
241 COG0731 Fe-S oxidoreductases [ 66.5 10 0.00022 34.4 4.7 47 140-194 90-137 (296)
242 TIGR02468 sucrsPsyn_pln sucros 66.4 23 0.00049 37.7 7.8 46 146-194 788-838 (1050)
243 cd07043 STAS_anti-anti-sigma_f 66.3 23 0.0005 25.2 5.9 56 99-186 38-93 (99)
244 PF01740 STAS: STAS domain; I 66.1 4.6 0.0001 30.5 2.1 58 98-187 47-104 (117)
245 PRK00994 F420-dependent methyl 64.7 73 0.0016 28.2 9.3 72 151-228 23-97 (277)
246 cd06844 STAS Sulphate Transpor 64.6 37 0.0008 24.8 6.8 57 98-186 38-94 (100)
247 cd07041 STAS_RsbR_RsbS_like Su 63.4 29 0.00062 25.7 6.1 58 97-186 39-96 (109)
248 TIGR00377 ant_ant_sig anti-ant 62.3 30 0.00064 25.4 6.0 57 98-186 42-98 (108)
249 PF05822 UMPH-1: Pyrimidine 5' 60.9 22 0.00048 31.4 5.7 57 127-186 75-131 (246)
250 COG2344 AT-rich DNA-binding pr 60.3 16 0.00035 31.2 4.5 45 141-186 129-173 (211)
251 cd06416 GH25_Lys1-like Lys-1 i 59.9 24 0.00053 29.4 5.6 65 81-168 69-133 (196)
252 TIGR01485 SPP_plant-cyano sucr 59.8 33 0.00071 29.6 6.6 88 157-246 118-212 (249)
253 PF06415 iPGM_N: BPG-independe 59.5 48 0.001 28.8 7.4 80 139-218 8-95 (223)
254 KOG3040 Predicted sugar phosph 59.3 6.3 0.00014 34.2 1.9 44 198-242 179-224 (262)
255 PF13701 DDE_Tnp_1_4: Transpos 58.7 81 0.0018 30.3 9.5 19 97-115 137-155 (448)
256 KOG0203 Na+/K+ ATPase, alpha s 58.5 75 0.0016 33.2 9.4 58 97-169 560-617 (1019)
257 cd05008 SIS_GlmS_GlmD_1 SIS (S 58.1 16 0.00035 27.7 3.9 28 143-170 58-85 (126)
258 cd05014 SIS_Kpsf KpsF-like pro 58.0 16 0.00035 27.8 3.9 30 141-170 57-86 (128)
259 KOG1344 Predicted histone deac 57.6 95 0.0021 27.5 8.8 100 60-184 218-322 (324)
260 PF01380 SIS: SIS domain SIS d 54.7 21 0.00045 27.0 4.1 28 143-170 65-92 (131)
261 cd06603 GH31_GANC_GANAB_alpha 54.3 35 0.00075 31.3 6.1 61 84-166 25-85 (339)
262 cd05013 SIS_RpiR RpiR-like pro 53.6 20 0.00044 27.1 3.8 26 145-170 74-99 (139)
263 cd06600 GH31_MGAM-like This fa 53.2 36 0.00078 30.9 5.9 60 85-166 26-85 (317)
264 cd06601 GH31_lyase_GLase GLase 52.4 53 0.0011 30.2 6.9 59 86-166 27-85 (332)
265 cd08198 DHQS-like2 Dehydroquin 52.1 97 0.0021 29.0 8.7 88 158-245 30-133 (369)
266 cd06539 CIDE_N_A CIDE_N domain 51.3 11 0.00024 27.3 1.8 22 98-119 39-60 (78)
267 PRK10658 putative alpha-glucos 51.0 51 0.0011 33.3 7.1 43 142-184 322-364 (665)
268 cd06599 GH31_glycosidase_Aec37 50.7 78 0.0017 28.7 7.7 44 141-184 69-112 (317)
269 cd05710 SIS_1 A subgroup of th 50.6 26 0.00056 26.8 4.0 29 142-170 58-86 (120)
270 PF14336 DUF4392: Domain of un 50.3 52 0.0011 29.7 6.4 45 140-186 58-102 (291)
271 cd02072 Glm_B12_BD B12 binding 50.3 1.3E+02 0.0027 23.9 8.4 81 147-231 39-122 (128)
272 TIGR03127 RuMP_HxlB 6-phospho 49.8 24 0.00053 28.8 4.0 29 142-170 83-111 (179)
273 PF00578 AhpC-TSA: AhpC/TSA fa 49.8 35 0.00076 25.4 4.6 40 143-185 44-83 (124)
274 smart00266 CAD Domains present 49.4 12 0.00026 26.8 1.7 21 99-119 38-58 (74)
275 cd06537 CIDE_N_B CIDE_N domain 48.8 13 0.00027 27.2 1.8 22 98-119 38-59 (81)
276 PF07511 DUF1525: Protein of u 48.7 33 0.00072 26.7 4.2 63 40-105 27-90 (114)
277 cd06602 GH31_MGAM_SI_GAA This 48.4 48 0.001 30.5 6.0 25 142-166 61-87 (339)
278 COG2044 Predicted peroxiredoxi 48.2 27 0.00059 27.4 3.7 51 99-168 35-85 (120)
279 COG1501 Alpha-glucosidases, fa 47.9 56 0.0012 33.7 6.9 45 141-185 317-361 (772)
280 cd06604 GH31_glucosidase_II_Ma 47.4 63 0.0014 29.5 6.6 60 85-166 26-85 (339)
281 cd05006 SIS_GmhA Phosphoheptos 46.2 30 0.00066 28.2 4.0 30 141-170 111-140 (177)
282 cd01615 CIDE_N CIDE_N domain, 46.0 15 0.00032 26.7 1.8 23 97-119 38-60 (78)
283 cd05017 SIS_PGI_PMI_1 The memb 45.6 32 0.0007 26.1 3.8 27 142-168 54-80 (119)
284 smart00851 MGS MGS-like domain 45.3 31 0.00068 24.9 3.5 32 147-186 2-33 (90)
285 cd06536 CIDE_N_ICAD CIDE_N dom 45.1 15 0.00033 26.7 1.7 23 97-119 40-62 (80)
286 TIGR00640 acid_CoA_mut_C methy 45.0 1.5E+02 0.0033 23.3 8.0 76 147-232 42-120 (132)
287 PF09198 T4-Gluco-transf: Bact 45.0 7.3 0.00016 23.6 0.0 13 48-60 9-21 (38)
288 TIGR00441 gmhA phosphoheptose 44.8 34 0.00074 27.5 4.0 28 143-170 91-118 (154)
289 cd06593 GH31_xylosidase_YicI Y 44.8 1E+02 0.0022 27.6 7.4 26 141-166 62-87 (308)
290 cd06538 CIDE_N_FSP27 CIDE_N do 44.5 16 0.00035 26.6 1.7 21 99-119 39-59 (79)
291 cd05005 SIS_PHI Hexulose-6-pho 43.8 35 0.00075 27.9 4.0 30 141-170 85-114 (179)
292 TIGR01501 MthylAspMutase methy 43.7 1.7E+02 0.0036 23.3 8.7 81 147-231 41-124 (134)
293 TIGR03757 conj_TIGR03757 integ 43.5 42 0.00091 26.1 4.1 62 41-105 29-91 (113)
294 PRK13937 phosphoheptose isomer 43.5 34 0.00075 28.4 3.9 29 142-170 117-145 (188)
295 cd03018 PRX_AhpE_like Peroxire 43.3 66 0.0014 24.9 5.4 40 143-185 47-86 (149)
296 COG1184 GCD2 Translation initi 42.9 52 0.0011 30.0 5.2 42 145-186 130-173 (301)
297 cd06589 GH31 The enzymes of gl 42.9 80 0.0017 27.7 6.4 44 141-186 62-109 (265)
298 PRK06203 aroB 3-dehydroquinate 42.9 2.2E+02 0.0048 26.7 9.6 88 158-245 42-145 (389)
299 PF01055 Glyco_hydro_31: Glyco 42.8 71 0.0015 30.1 6.4 78 85-184 45-125 (441)
300 TIGR02109 PQQ_syn_pqqE coenzym 42.4 54 0.0012 29.9 5.4 42 143-185 66-107 (358)
301 cd06414 GH25_LytC-like The Lyt 41.8 58 0.0013 27.1 5.1 68 78-168 69-136 (191)
302 TIGR00236 wecB UDP-N-acetylglu 41.7 79 0.0017 28.6 6.4 86 146-234 15-103 (365)
303 COG1366 SpoIIAA Anti-anti-sigm 41.6 93 0.002 23.5 5.9 60 96-187 41-100 (117)
304 cd06525 GH25_Lyc-like Lyc mura 41.6 44 0.00095 27.6 4.3 61 81-168 66-127 (184)
305 TIGR02495 NrdG2 anaerobic ribo 41.2 71 0.0015 26.1 5.5 38 144-184 76-113 (191)
306 TIGR01370 cysRS possible cyste 40.8 87 0.0019 28.7 6.3 27 145-171 187-217 (315)
307 cd06415 GH25_Cpl1-like Cpl-1 l 40.8 65 0.0014 26.9 5.2 65 78-168 66-131 (196)
308 cd04795 SIS SIS domain. SIS (S 40.4 40 0.00087 23.4 3.4 22 144-165 60-81 (87)
309 PF03345 DDOST_48kD: Oligosacc 40.2 1.4E+02 0.0031 28.5 7.9 72 147-227 14-87 (423)
310 KOG0541 Alkyl hydroperoxide re 40.2 2.2E+02 0.0047 23.7 8.3 62 97-186 42-104 (171)
311 cd03017 PRX_BCP Peroxiredoxin 39.8 82 0.0018 24.0 5.4 40 143-185 42-81 (140)
312 cd03012 TlpA_like_DipZ_like Tl 39.5 56 0.0012 24.8 4.3 44 143-186 41-87 (126)
313 cd00532 MGS-like MGS-like doma 39.4 69 0.0015 24.2 4.8 67 143-226 10-77 (112)
314 COG0678 AHP1 Peroxiredoxin [Po 38.9 2.2E+02 0.0048 23.5 8.3 69 97-195 36-105 (165)
315 COG1817 Uncharacterized protei 38.9 27 0.00058 32.2 2.7 48 135-186 4-51 (346)
316 PF02254 TrkA_N: TrkA-N domain 38.3 1.4E+02 0.0031 21.9 6.4 24 146-169 9-32 (116)
317 PF13580 SIS_2: SIS domain; PD 37.8 37 0.00081 26.7 3.1 23 144-166 116-138 (138)
318 TIGR01691 enolase-ppase 2,3-di 37.7 21 0.00045 30.8 1.8 14 100-113 2-15 (220)
319 cd06597 GH31_transferase_CtsY 37.7 1.2E+02 0.0026 27.9 6.9 25 142-166 82-106 (340)
320 cd06523 GH25_PlyB-like PlyB is 37.4 1.1E+02 0.0023 25.2 5.9 59 78-168 66-125 (177)
321 PRK05301 pyrroloquinoline quin 37.3 75 0.0016 29.3 5.6 42 143-185 75-116 (378)
322 PRK13938 phosphoheptose isomer 37.3 50 0.0011 28.0 4.0 29 142-170 124-152 (196)
323 cd02071 MM_CoA_mut_B12_BD meth 37.1 1.9E+02 0.0041 22.1 8.0 74 148-231 40-116 (122)
324 cd00861 ProRS_anticodon_short 37.0 1.2E+02 0.0027 21.4 5.6 14 215-228 52-65 (94)
325 PF04007 DUF354: Protein of un 36.8 39 0.00084 31.2 3.5 42 141-186 10-51 (335)
326 smart00540 LEM in nuclear memb 36.7 34 0.00074 22.0 2.2 32 148-182 9-40 (44)
327 cd01421 IMPCH Inosine monophos 36.6 45 0.00098 28.2 3.5 35 144-186 10-44 (187)
328 COG1964 Predicted Fe-S oxidore 36.5 2.7E+02 0.0059 26.9 9.0 76 140-219 120-201 (475)
329 cd08181 PPD-like 1,3-propanedi 36.3 2.5E+02 0.0054 25.8 8.8 77 152-233 19-100 (357)
330 KOG3128 Uncharacterized conser 36.2 66 0.0014 28.8 4.6 53 127-182 123-175 (298)
331 cd08197 DOIS 2-deoxy-scyllo-in 36.2 3.1E+02 0.0068 25.3 9.4 90 153-245 17-118 (355)
332 COG3603 Uncharacterized conser 35.8 72 0.0016 25.1 4.2 20 149-168 82-101 (128)
333 PF09334 tRNA-synt_1g: tRNA sy 35.7 47 0.001 31.2 3.9 67 147-218 25-112 (391)
334 PRK02261 methylaspartate mutas 35.5 2.2E+02 0.0048 22.5 9.0 81 147-231 43-126 (137)
335 PF03808 Glyco_tran_WecB: Glyc 35.4 2.5E+02 0.0053 22.9 8.4 40 142-182 32-71 (172)
336 TIGR02244 HAD-IG-Ncltidse HAD 35.0 34 0.00074 31.7 2.8 16 97-112 10-25 (343)
337 TIGR01486 HAD-SF-IIB-MPGP mann 35.0 1.3E+02 0.0029 25.8 6.5 28 218-245 194-221 (256)
338 PRK12342 hypothetical protein; 34.9 3.2E+02 0.007 24.1 9.3 85 147-235 40-126 (254)
339 cd06524 GH25_YegX-like YegX is 34.7 76 0.0016 26.4 4.7 62 82-168 71-133 (194)
340 smart00481 POLIIIAc DNA polyme 34.3 1.3E+02 0.0028 20.1 5.1 39 147-185 17-56 (67)
341 KOG0209 P-type ATPase [Inorgan 34.1 1.2E+02 0.0027 31.8 6.6 30 140-169 673-702 (1160)
342 cd02072 Glm_B12_BD B12 binding 33.9 95 0.002 24.6 4.8 45 141-185 61-110 (128)
343 cd04906 ACT_ThrD-I_1 First of 33.8 68 0.0015 22.9 3.8 24 145-168 53-76 (85)
344 PRK00414 gmhA phosphoheptose i 33.6 61 0.0013 27.2 3.9 27 143-169 123-149 (192)
345 PRK10886 DnaA initiator-associ 33.6 62 0.0013 27.4 4.0 27 143-169 121-147 (196)
346 PF12694 MoCo_carrier: Putativ 33.5 47 0.001 27.0 3.0 52 141-195 73-124 (145)
347 PRK13936 phosphoheptose isomer 33.4 62 0.0013 27.2 4.0 27 143-169 123-149 (197)
348 TIGR01210 conserved hypothetic 33.3 3.4E+02 0.0074 24.5 9.1 41 145-185 88-129 (313)
349 TIGR01482 SPP-subfamily Sucros 33.2 41 0.00089 28.1 2.9 37 209-245 154-192 (225)
350 PF00070 Pyr_redox: Pyridine n 33.1 1.6E+02 0.0035 20.3 5.6 41 146-186 10-57 (80)
351 PF09587 PGA_cap: Bacterial ca 33.0 1.9E+02 0.004 25.0 7.1 67 99-186 37-108 (250)
352 cd06594 GH31_glucosidase_YihQ 32.9 1.2E+02 0.0026 27.5 6.0 26 142-167 68-93 (317)
353 PRK12702 mannosyl-3-phosphogly 32.9 69 0.0015 29.2 4.3 28 220-247 228-255 (302)
354 COG0279 GmhA Phosphoheptose is 32.7 63 0.0014 27.0 3.7 28 143-170 121-148 (176)
355 PF03033 Glyco_transf_28: Glyc 32.6 63 0.0014 24.6 3.7 35 146-186 14-48 (139)
356 PRK00994 F420-dependent methyl 32.4 1.2E+02 0.0026 26.9 5.5 51 139-195 68-118 (277)
357 COG2086 FixA Electron transfer 32.3 3.6E+02 0.0079 24.0 8.8 85 146-236 41-129 (260)
358 TIGR03278 methan_mark_10 putat 32.0 1E+02 0.0022 29.3 5.5 45 142-186 86-131 (404)
359 KOG0652 26S proteasome regulat 31.9 63 0.0014 29.4 3.8 74 73-169 244-321 (424)
360 cd02971 PRX_family Peroxiredox 31.0 1.4E+02 0.003 22.6 5.4 39 144-185 42-81 (140)
361 PF13478 XdhC_C: XdhC Rossmann 31.0 2E+02 0.0044 22.7 6.4 49 146-194 9-64 (136)
362 cd08183 Fe-ADH2 Iron-containin 31.0 2.7E+02 0.0058 25.7 8.2 77 152-234 16-93 (374)
363 TIGR03590 PseG pseudaminic aci 31.0 94 0.002 27.5 4.9 37 146-185 19-55 (279)
364 TIGR00099 Cof-subfamily Cof su 30.9 1.7E+02 0.0036 25.1 6.4 38 208-245 192-231 (256)
365 cd06259 YdcF-like YdcF-like. Y 30.7 2.6E+02 0.0056 21.7 7.7 78 147-228 23-105 (150)
366 cd01994 Alpha_ANH_like_IV This 30.4 1.3E+02 0.0029 25.2 5.5 65 146-221 76-141 (194)
367 COG0337 AroB 3-dehydroquinate 30.4 2.5E+02 0.0054 26.3 7.6 85 158-245 33-128 (360)
368 PF05221 AdoHcyase: S-adenosyl 30.3 78 0.0017 28.4 4.2 43 144-186 53-95 (268)
369 PRK01158 phosphoglycolate phos 30.3 48 0.001 27.8 2.8 27 219-245 174-200 (230)
370 cd01012 YcaC_related YcaC rela 29.8 2E+02 0.0042 22.9 6.2 28 141-168 19-46 (157)
371 PF13651 EcoRI_methylase: Aden 29.7 2E+02 0.0043 26.7 6.7 78 98-175 92-176 (336)
372 cd01013 isochorismatase Isocho 29.7 2.1E+02 0.0045 24.0 6.6 24 142-165 54-77 (203)
373 PF03193 DUF258: Protein of un 29.3 1.2E+02 0.0025 25.0 4.8 56 148-215 2-57 (161)
374 cd01423 MGS_CPS_I_III Methylgl 29.2 85 0.0018 23.7 3.8 70 143-226 11-80 (116)
375 PRK04531 acetylglutamate kinas 29.1 2.3E+02 0.0051 26.7 7.4 70 83-186 21-90 (398)
376 PRK12360 4-hydroxy-3-methylbut 28.7 2.4E+02 0.0051 25.5 7.0 17 211-228 110-126 (281)
377 TIGR02471 sucr_syn_bact_C sucr 28.7 63 0.0014 27.5 3.3 85 158-246 112-203 (236)
378 TIGR00936 ahcY adenosylhomocys 28.7 1.1E+02 0.0023 29.2 5.0 46 142-187 40-85 (406)
379 KOG0205 Plasma membrane H+-tra 28.7 1.3E+02 0.0027 30.8 5.6 88 141-233 491-599 (942)
380 TIGR03470 HpnH hopanoid biosyn 28.7 4.4E+02 0.0095 23.8 9.0 41 143-185 85-125 (318)
381 PRK10624 L-1,2-propanediol oxi 28.7 4.3E+02 0.0093 24.5 9.1 79 149-232 20-103 (382)
382 KOG2599 Pyridoxal/pyridoxine/p 28.6 2.6E+02 0.0055 25.4 7.0 107 45-168 73-190 (308)
383 PRK02947 hypothetical protein; 28.5 73 0.0016 27.8 3.7 27 143-169 118-144 (246)
384 COG0143 MetG Methionyl-tRNA sy 28.4 1.1E+02 0.0025 30.3 5.3 26 145-170 29-54 (558)
385 cd02071 MM_CoA_mut_B12_BD meth 28.4 1.4E+02 0.003 22.9 4.9 42 142-186 62-105 (122)
386 COG3769 Predicted hydrolase (H 28.2 2E+02 0.0044 25.4 6.2 96 143-243 135-234 (274)
387 PF02017 CIDE-N: CIDE-N domain 28.1 40 0.00087 24.4 1.6 22 98-119 39-60 (78)
388 cd00599 GH25_muramidase Endo-N 28.0 97 0.0021 25.3 4.2 62 81-168 66-128 (186)
389 cd08182 HEPD Hydroxyethylphosp 27.9 3.8E+02 0.0082 24.6 8.6 79 151-234 15-95 (367)
390 TIGR00815 sulP high affinity s 27.8 2.1E+02 0.0046 28.1 7.2 39 143-186 511-549 (563)
391 PLN02763 hydrolase, hydrolyzin 27.8 1.7E+02 0.0037 31.2 6.6 59 85-165 203-261 (978)
392 COG4464 CapC Capsular polysacc 27.7 71 0.0015 27.9 3.3 27 141-167 16-42 (254)
393 PRK12314 gamma-glutamyl kinase 27.6 3.4E+02 0.0074 23.9 7.9 80 143-223 32-139 (266)
394 TIGR02638 lactal_redase lactal 27.5 4.1E+02 0.0089 24.6 8.7 78 150-232 20-102 (379)
395 PLN00094 aconitate hydratase 2 27.5 3E+02 0.0065 29.0 8.2 33 147-179 281-315 (938)
396 cd00401 AdoHcyase S-adenosyl-L 27.4 1.2E+02 0.0025 29.0 5.1 44 143-186 45-88 (413)
397 PRK02910 light-independent pro 27.1 4.2E+02 0.0091 25.8 9.0 28 157-186 292-320 (519)
398 PRK11337 DNA-binding transcrip 27.1 85 0.0018 27.7 3.9 28 143-170 199-226 (292)
399 PF02142 MGS: MGS-like domain 26.9 1.2E+02 0.0026 22.1 4.1 72 146-230 1-73 (95)
400 PRK11557 putative DNA-binding 26.8 79 0.0017 27.7 3.7 29 142-170 186-214 (278)
401 TIGR00639 PurN phosphoribosylg 26.8 3.8E+02 0.0082 22.4 8.1 36 148-186 15-53 (190)
402 PRK09437 bcp thioredoxin-depen 26.8 1.8E+02 0.0038 22.7 5.4 39 144-185 50-88 (154)
403 PRK05476 S-adenosyl-L-homocyst 26.7 1.2E+02 0.0025 29.1 4.9 45 142-186 56-100 (425)
404 PF04413 Glycos_transf_N: 3-De 26.6 93 0.002 26.0 3.9 21 149-169 109-129 (186)
405 PF13911 AhpC-TSA_2: AhpC/TSA 26.3 2.6E+02 0.0057 20.7 6.1 41 149-194 4-44 (115)
406 PF04055 Radical_SAM: Radical 26.3 2.9E+02 0.0062 20.9 6.9 40 145-185 60-102 (166)
407 COG0263 ProB Glutamate 5-kinas 26.2 2.3E+02 0.005 26.6 6.5 53 143-196 29-109 (369)
408 PF02698 DUF218: DUF218 domain 26.1 2.3E+02 0.005 22.1 6.0 74 151-228 30-108 (155)
409 cd08185 Fe-ADH1 Iron-containin 26.1 4.5E+02 0.0098 24.2 8.7 79 150-233 17-100 (380)
410 PF08444 Gly_acyl_tr_C: Aralky 26.0 1.2E+02 0.0027 22.4 4.0 36 147-185 41-76 (89)
411 PF05240 APOBEC_C: APOBEC-like 25.9 1E+02 0.0022 20.8 3.1 24 145-168 2-25 (55)
412 PF13439 Glyco_transf_4: Glyco 25.9 91 0.002 23.9 3.6 24 147-170 18-41 (177)
413 PRK15482 transcriptional regul 25.5 96 0.0021 27.4 4.0 30 141-170 192-221 (285)
414 cd08189 Fe-ADH5 Iron-containin 25.4 4.8E+02 0.01 24.0 8.8 79 150-233 17-100 (374)
415 TIGR02826 RNR_activ_nrdG3 anae 25.1 1.6E+02 0.0035 23.6 4.9 24 145-168 75-98 (147)
416 PRK00942 acetylglutamate kinas 25.0 4.3E+02 0.0092 23.3 8.1 28 81-113 10-37 (283)
417 TIGR00393 kpsF KpsF/GutQ famil 24.8 97 0.0021 26.8 3.8 27 142-168 58-84 (268)
418 cd05007 SIS_Etherase N-acetylm 24.7 1E+02 0.0022 27.1 4.0 28 143-170 130-157 (257)
419 smart00463 SMR Small MutS-rela 24.7 1.6E+02 0.0035 20.5 4.4 28 142-169 13-42 (80)
420 cd06522 GH25_AtlA-like AtlA is 24.6 2.4E+02 0.0052 23.4 6.0 63 78-168 69-133 (192)
421 PF09345 DUF1987: Domain of un 24.3 1.3E+02 0.0027 22.7 3.8 69 69-164 14-82 (99)
422 COG0381 WecB UDP-N-acetylgluco 24.1 2.2E+02 0.0047 26.9 6.1 86 148-234 20-109 (383)
423 cd01424 MGS_CPS_II Methylglyox 24.1 1.1E+02 0.0024 22.8 3.6 34 144-185 12-45 (110)
424 cd06533 Glyco_transf_WecG_TagA 24.0 4E+02 0.0086 21.7 8.4 38 144-182 32-69 (171)
425 PF06543 Lac_bphage_repr: Lact 23.9 74 0.0016 20.8 2.1 26 131-156 19-44 (49)
426 PRK10892 D-arabinose 5-phospha 23.9 1E+02 0.0022 27.8 3.8 27 142-168 105-131 (326)
427 cd06417 GH25_LysA-like LysA is 23.8 2E+02 0.0043 23.9 5.4 60 81-168 63-123 (195)
428 cd00431 cysteine_hydrolases Cy 23.8 1.1E+02 0.0023 24.1 3.6 29 141-169 23-51 (161)
429 TIGR03365 Bsubt_queE 7-cyano-7 23.6 84 0.0018 27.2 3.2 25 145-169 87-111 (238)
430 TIGR00676 fadh2 5,10-methylene 23.6 5.1E+02 0.011 22.8 8.2 25 144-168 43-69 (272)
431 PRK09426 methylmalonyl-CoA mut 23.3 8.2E+02 0.018 25.1 11.4 79 144-232 619-700 (714)
432 TIGR01357 aroB 3-dehydroquinat 23.3 5.5E+02 0.012 23.3 8.6 85 158-245 20-115 (344)
433 PF03465 eRF1_3: eRF1 domain 3 23.2 2E+02 0.0043 22.0 4.8 24 146-169 70-93 (113)
434 cd08176 LPO Lactadehyde:propan 23.2 5.2E+02 0.011 23.8 8.6 79 149-232 18-101 (377)
435 PF01993 MTD: methylene-5,6,7, 22.9 2.3E+02 0.005 25.2 5.6 51 139-195 67-117 (276)
436 PRK11543 gutQ D-arabinose 5-ph 22.9 1.1E+02 0.0024 27.3 3.9 28 142-169 100-127 (321)
437 PRK13402 gamma-glutamyl kinase 22.9 4E+02 0.0087 24.9 7.7 83 144-229 29-140 (368)
438 PF08282 Hydrolase_3: haloacid 22.9 80 0.0017 26.1 2.8 38 208-245 190-229 (254)
439 cd08190 HOT Hydroxyacid-oxoaci 22.8 6.3E+02 0.014 23.7 9.1 77 150-231 14-95 (414)
440 PRK05441 murQ N-acetylmuramic 22.7 1.2E+02 0.0025 27.5 4.0 28 143-170 143-170 (299)
441 PLN02834 3-dehydroquinate synt 22.7 5.7E+02 0.012 24.4 8.8 87 157-245 99-197 (433)
442 cd02968 SCO SCO (an acronym fo 22.6 1.8E+02 0.004 22.0 4.7 42 143-184 41-86 (142)
443 PRK15454 ethanol dehydrogenase 22.6 4.9E+02 0.011 24.3 8.3 80 148-232 38-122 (395)
444 COG1553 DsrE Uncharacterized c 22.6 3.9E+02 0.0086 21.1 6.7 72 70-165 8-79 (126)
445 cd02970 PRX_like2 Peroxiredoxi 22.6 2.4E+02 0.0052 21.4 5.4 39 144-185 43-81 (149)
446 PF00532 Peripla_BP_1: Peripla 22.5 5.2E+02 0.011 22.5 8.4 23 209-231 109-132 (279)
447 TIGR00696 wecB_tagA_cpsF bacte 22.5 4.5E+02 0.0097 21.7 8.3 38 144-182 34-71 (177)
448 PRK11382 frlB fructoselysine-6 22.3 1.2E+02 0.0025 27.8 3.9 27 143-169 104-130 (340)
449 TIGR00274 N-acetylmuramic acid 22.2 1.2E+02 0.0026 27.3 4.0 27 144-170 139-165 (291)
450 KOG0183 20S proteasome, regula 21.9 74 0.0016 27.7 2.3 23 132-154 154-176 (249)
451 COG0809 QueA S-adenosylmethion 21.7 84 0.0018 29.1 2.8 23 144-166 185-207 (348)
452 CHL00202 argB acetylglutamate 21.7 4.7E+02 0.01 23.2 7.7 29 80-113 9-37 (284)
453 PRK05429 gamma-glutamyl kinase 21.6 3.2E+02 0.0069 25.4 6.8 48 99-167 8-55 (372)
454 PF13477 Glyco_trans_4_2: Glyc 21.5 1.3E+02 0.0028 22.7 3.6 70 146-225 12-82 (139)
455 KOG2900 Biotin synthase [Coenz 21.5 2.4E+02 0.0051 25.4 5.4 92 139-233 148-247 (380)
456 TIGR02109 PQQ_syn_pqqE coenzym 21.5 4.2E+02 0.0091 24.0 7.5 44 143-186 130-176 (358)
457 cd04242 AAK_G5K_ProB AAK_G5K_P 21.4 4.4E+02 0.0095 22.8 7.3 23 144-166 23-45 (251)
458 TIGR01917 gly_red_sel_B glycin 21.4 1.8E+02 0.0039 27.9 5.0 43 144-186 322-367 (431)
459 PRK11660 putative transporter; 21.1 2.8E+02 0.006 27.3 6.6 39 142-186 507-545 (568)
460 cd08192 Fe-ADH7 Iron-containin 21.0 6.5E+02 0.014 23.0 8.8 81 149-234 14-99 (370)
461 cd02969 PRX_like1 Peroxiredoxi 20.9 2.4E+02 0.0053 22.4 5.3 43 143-185 43-90 (171)
462 KOG2469 IMP-GMP specific 5'-nu 20.9 1.9E+02 0.0041 27.6 4.9 46 147-192 203-248 (424)
463 cd00860 ThrRS_anticodon ThrRS 20.9 2.7E+02 0.0059 19.2 5.0 20 144-163 14-33 (91)
464 PF04244 DPRP: Deoxyribodipyri 20.9 2.6E+02 0.0056 24.2 5.6 43 143-185 47-93 (224)
465 cd08187 BDH Butanol dehydrogen 20.9 6.4E+02 0.014 23.3 8.7 76 152-232 22-102 (382)
466 PRK10426 alpha-glucosidase; Pr 20.8 2.7E+02 0.0058 28.1 6.4 44 141-184 265-308 (635)
467 PRK14021 bifunctional shikimat 20.6 7.4E+02 0.016 24.3 9.4 91 152-245 203-303 (542)
468 cd05009 SIS_GlmS_GlmD_2 SIS (S 20.5 1.4E+02 0.0031 23.0 3.7 24 145-168 76-99 (153)
469 PLN02494 adenosylhomocysteinas 20.4 2E+02 0.0043 28.0 5.2 42 145-186 57-98 (477)
470 cd01453 vWA_transcription_fact 20.3 4.7E+02 0.01 21.4 6.9 21 148-168 126-146 (183)
471 TIGR00355 purH phosphoribosyla 20.2 1.2E+02 0.0026 29.7 3.7 35 144-186 10-44 (511)
472 cd00340 GSH_Peroxidase Glutath 20.2 2.1E+02 0.0045 22.5 4.6 44 142-185 38-87 (152)
473 TIGR00221 nagA N-acetylglucosa 20.2 3.2E+02 0.0069 25.5 6.5 61 127-190 151-219 (380)
474 PRK08335 translation initiatio 20.2 2.2E+02 0.0049 25.5 5.2 19 150-168 152-170 (275)
475 cd01014 nicotinamidase_related 20.1 2.6E+02 0.0057 22.1 5.2 27 141-167 22-48 (155)
476 PRK05301 pyrroloquinoline quin 20.1 4.9E+02 0.011 23.8 7.7 44 143-186 139-185 (378)
No 1
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=100.00 E-value=5.2e-73 Score=489.25 Aligned_cols=218 Identities=56% Similarity=1.002 Sum_probs=211.7
Q ss_pred CCCCCccchhhhheecccccccccccchhhhhhhhccchhhHhhHHHHHHHHHHHHHhhhhcCCCCcEEEEecCCCccCC
Q 036571 34 FPDLSCLSWRLAVETNNIIGWKTTPEKCEGYLGHYMLGQQYREDSEAVAYEAIVYAQSLELAGDGREIWIFDIDETSLSN 113 (251)
Q Consensus 34 ~~~~~c~s~~~~~e~nn~~~~~~vp~~c~~~v~~y~~~~~Y~~d~~~~~~~a~~~~~~~~~~~~~~~avvfDIDgTlldn 113 (251)
.+.+||.||||+||+||+++|+|||++|++||++||+|+||++|+++++++|..|++++.+++++++|||||||+|+|||
T Consensus 12 ~~~~~c~swr~~ve~~n~~~~~~vp~~c~~~v~~Y~~~~~Y~~D~~~v~~~a~~y~~~~~~~~dg~~A~V~DIDET~LsN 91 (229)
T TIGR01675 12 IDYAYCRSWRLGVETNNIRDWDTVPAECKDYVEDYMTSKQYKRDVKRVVDEAYFYAKSLALSGDGMDAWIFDVDDTLLSN 91 (229)
T ss_pred CCcCcchhhhhhhhhccccccccCcHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHhhccCCCCcEEEEccccccccC
Confidence 35889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEe
Q 036571 114 LPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILK 193 (251)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr 193 (251)
.||+..++|++++|+++.|++|+..++++++|++++++++|+++|++|+|+|||++.+|+.|.+||+++||+.|++|+||
T Consensus 92 ~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~~~LiLR 171 (229)
T TIGR01675 92 IPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGWKHLILR 171 (229)
T ss_pred HHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCcCeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccchHHHHHHHHhcCccEEEEEcCCccccccccccCcEEEeCCCCCCCC
Q 036571 194 GSSYSGETAVVYKSSERKRLEKKGYRIIGNIGDQWSDLLGTNAGNRTFKLPDPMYYIS 251 (251)
Q Consensus 194 ~~~~~~kp~~~~K~~~r~~L~~~g~~i~~~VGDq~sDi~ga~~g~r~f~lPnp~y~~~ 251 (251)
+.++..+++..||+++|++++++||+|+++|||||+||.|+++|.|+|||||||||||
T Consensus 172 ~~~d~~~~~~~yKs~~R~~l~~~GYrIv~~iGDq~sDl~G~~~~~RtFKLPNPmYyi~ 229 (229)
T TIGR01675 172 GLEDSNKTVVTYKSEVRKSLMEEGYRIWGNIGDQWSDLLGSPPGRRTFKLPNPMYYVP 229 (229)
T ss_pred CCCCCCchHhHHHHHHHHHHHhCCceEEEEECCChHHhcCCCccCceeeCCCCcccCC
Confidence 8777777788899999999999999999999999999999999999999999999997
No 2
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=100.00 E-value=5.7e-71 Score=483.74 Aligned_cols=229 Identities=51% Similarity=0.924 Sum_probs=216.2
Q ss_pred ceeecccCCCCCCC-CCCCCCccchhhhheecccccccccccchhhhhhhhccchhhHhhHHHHHHHHHHHHHhhhhcCC
Q 036571 19 QIHLLRPKSGARTN-DFPDLSCLSWRLAVETNNIIGWKTTPEKCEGYLGHYMLGQQYREDSEAVAYEAIVYAQSLELAGD 97 (251)
Q Consensus 19 ~~~~~~~~~~~~~~-~~~~~~c~s~~~~~e~nn~~~~~~vp~~c~~~v~~y~~~~~Y~~d~~~~~~~a~~~~~~~~~~~~ 97 (251)
+||.|+|.++.+++ ..++++|.|||++||+||+++|+|||++|++||++||+|+||++|+++++++|+.|+++++. +
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~c~swr~~vE~~n~~~w~~vP~~C~~~v~~Y~~ggqY~~D~~~v~~~a~~y~~~~~~--~ 99 (275)
T TIGR01680 22 DMFPLRMNTGYGAGARDPEVKCASWRLAVEAHNIFGFETIPEECVDATAEYIEGEQYRSDSKTVNQQAYFFARDLEV--H 99 (275)
T ss_pred hhhcccccccccccccCCCCcccceeeeeeecccCCcccCcHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCcC--C
Confidence 49999999998765 56899999999999999999999999999999999999999999999999999999988865 4
Q ss_pred CCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHH-HHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHH
Q 036571 98 GREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFN-EWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTE 176 (251)
Q Consensus 98 ~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~-~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~ 176 (251)
+++|||||||||+|||.||+..++||+++|+++.|+ +|+..+.+|++|++++|+++|+++|++|+|||||++.+|+.|+
T Consensus 100 ~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~ 179 (275)
T TIGR01680 100 EKDTFLFNIDGTALSNIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTE 179 (275)
T ss_pred CCCEEEEECccccccCHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHH
Confidence 689999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCcceEEEeCCCC-CCCccccchHHHHHHHHhcCccEEEEEcCCcccccccccc-CcEEEeCCCCCC
Q 036571 177 NNLKNVGFYTWENLILKGSSY-SGETAVVYKSSERKRLEKKGYRIIGNIGDQWSDLLGTNAG-NRTFKLPDPMYY 249 (251)
Q Consensus 177 ~~L~~~G~~~~~~lilr~~~~-~~kp~~~~K~~~r~~L~~~g~~i~~~VGDq~sDi~ga~~g-~r~f~lPnp~y~ 249 (251)
+||+++||+.|++|+||+.++ .+++++.||+..|++++++||+|+++|||||+||.|++.| .|+||||||||-
T Consensus 180 ~NL~kaGy~~~~~LiLR~~~D~~~~~av~yKs~~R~~li~eGYrIv~~iGDq~sDl~G~~~g~~RtFKLPNP~~~ 254 (275)
T TIGR01680 180 ANLKKAGYHTWEKLILKDPQDNSAENAVEYKTAARAKLIQEGYNIVGIIGDQWNDLKGEHRGAIRSFKLPNPCTT 254 (275)
T ss_pred HHHHHcCCCCcceeeecCCCCCccchhHHHHHHHHHHHHHcCceEEEEECCCHHhccCCCccCcceecCCCcccc
Confidence 999999999999999998764 5567778999999999999999999999999999999886 799999999774
No 3
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=100.00 E-value=7.5e-55 Score=378.73 Aligned_cols=212 Identities=49% Similarity=0.796 Sum_probs=184.9
Q ss_pred CCCCccchhhhheecccccccccccchhhhhhhhccchhhHhhHHHHHHHHHHHHHhhhhcCCCCcEEEEecCCCccCCh
Q 036571 35 PDLSCLSWRLAVETNNIIGWKTTPEKCEGYLGHYMLGQQYREDSEAVAYEAIVYAQSLELAGDGREIWIFDIDETSLSNL 114 (251)
Q Consensus 35 ~~~~c~s~~~~~e~nn~~~~~~vp~~c~~~v~~y~~~~~Y~~d~~~~~~~a~~~~~~~~~~~~~~~avvfDIDgTlldn~ 114 (251)
...+|.||+++||+|| .+|.+ ++|++++.+ |+++||.+|+++++.+|++|++.....++++++||||||||+|||.
T Consensus 12 ~~~~c~s~~~~~e~~~-~~~~~--~~~~~~~~~-~~~~q~~~e~~a~~~~a~~~a~~~~~~~~~~~avv~DIDeTvLsn~ 87 (229)
T PF03767_consen 12 AALYCASWRLAVETNN-ANWTV--AECVEYVAD-VTWGQYSAEYKALVDQAYNYAKSRLDEADKPPAVVFDIDETVLSNS 87 (229)
T ss_dssp ------TCCSSHHHHH-----H--HHHHHTTHH-HHHHHHEHHHHHHHHHHHHHHHHHHHHHTSEEEEEEESBTTTEEHH
T ss_pred HHhhhhhccchhhhcc-hHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHhccCCCcEEEEECCcccccCH
Confidence 6889999999999999 99965 999999999 9999999999999999999999887777999999999999999999
Q ss_pred hhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeC
Q 036571 115 PYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKG 194 (251)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~ 194 (251)
+|+..+.+++..|+++.|++|+..+.++++||+++|+++++++|++|+|||||++.+|+.|++||+++||+.|++++|++
T Consensus 88 ~y~~~~~~~~~~~~~~~w~~wv~~~~~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~~~~~l~lr~ 167 (229)
T PF03767_consen 88 PYYAYLIFGGESFSPEDWDEWVASGKAPAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFPGWDHLILRP 167 (229)
T ss_dssp HHHHHHHHHTHHH-CCHHHHHHHCTGGEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTSTBSCGEEEE
T ss_pred HHHHHHhhccCCCChHHHHHHHhcccCcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCCccchhcccc
Confidence 99998888888899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC-CCCccccchHHHHHHHHhcCccEEEEEcCCcccccc----ccccCcEEEeCCCCCCC
Q 036571 195 SSY-SGETAVVYKSSERKRLEKKGYRIIGNIGDQWSDLLG----TNAGNRTFKLPDPMYYI 250 (251)
Q Consensus 195 ~~~-~~kp~~~~K~~~r~~L~~~g~~i~~~VGDq~sDi~g----a~~g~r~f~lPnp~y~~ 250 (251)
..+ ..++...||+.+|..|++.||+|+++||||++||.| +..+.|+|+|||||||+
T Consensus 168 ~~~~~~~~~~~yK~~~r~~i~~~Gy~Ii~~iGD~~~D~~~~~~~~~~~~r~f~lPNp~Yg~ 228 (229)
T PF03767_consen 168 DKDPSKKSAVEYKSERRKEIEKKGYRIIANIGDQLSDFSGAKTAGARAERWFKLPNPMYGS 228 (229)
T ss_dssp ESSTSS------SHHHHHHHHHTTEEEEEEEESSGGGCHCTHHHHHHHTTEEE-TTSSSSH
T ss_pred ccccccccccccchHHHHHHHHcCCcEEEEeCCCHHHhhcccccccccceEEEcCCCCCCC
Confidence 776 555677899999999999999999999999999999 56689999999999985
No 4
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=100.00 E-value=7.5e-35 Score=257.68 Aligned_cols=179 Identities=27% Similarity=0.421 Sum_probs=154.9
Q ss_pred hhhhhhccchhhHhhHHHHHHHHHHHHHhh-hhcCCCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCC
Q 036571 63 GYLGHYMLGQQYREDSEAVAYEAIVYAQSL-ELAGDGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEA 141 (251)
Q Consensus 63 ~~v~~y~~~~~Y~~d~~~~~~~a~~~~~~~-~~~~~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~ 141 (251)
..+..|..++.|+..+..++..|..++... +...++++|||||||||+|+|++|+..+.+++.+|+++.|++|+....+
T Consensus 38 ~~~~w~q~S~Ey~al~~q~~n~A~~~~~~~~~~~~~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~~~a 117 (266)
T TIGR01533 38 MSVAWMQRSAEYKALYLQAYNLAKMRLDNNLKKVKDKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQAAQA 117 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHcCCC
Confidence 457889999999998888888888776543 3336778999999999999999999888888889999999999999999
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCc--ceEEEeCCCCCCCccccchHHHHHHHHhcCcc
Q 036571 142 PSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTW--ENLILKGSSYSGETAVVYKSSERKRLEKKGYR 219 (251)
Q Consensus 142 ~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~--~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~ 219 (251)
+++||+++++++|+++|++++|+|||++..++.|.++|+++|++.+ +.+++++.. ..|...|+.|. ++|+
T Consensus 118 ~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~~~-------~~K~~rr~~I~-~~y~ 189 (266)
T TIGR01533 118 KPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKKDK-------SSKESRRQKVQ-KDYE 189 (266)
T ss_pred CcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCCCC-------CCcHHHHHHHH-hcCC
Confidence 9999999999999999999999999999999999999999999864 367777532 24667777775 5899
Q ss_pred EEEEEcCCccccccc-------------------cccCcEEEeCCCCCC
Q 036571 220 IIGNIGDQWSDLLGT-------------------NAGNRTFKLPDPMYY 249 (251)
Q Consensus 220 i~~~VGDq~sDi~ga-------------------~~g~r~f~lPnp~y~ 249 (251)
|+++|||+++||.+. .+|.++|+||||||.
T Consensus 190 Ivl~vGD~~~Df~~~~~~~~~~~~r~~~v~~~~~~fG~~~i~lPNp~YG 238 (266)
T TIGR01533 190 IVLLFGDNLLDFDDFFYKDKESQDRQALVLQNQEKFGKKFIILPNPMYG 238 (266)
T ss_pred EEEEECCCHHHhhhhhccCcchHHHHHHHHHHHHHhCCCeEEecCCCCc
Confidence 999999999999764 268999999999994
No 5
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=99.97 E-value=1.3e-30 Score=223.02 Aligned_cols=165 Identities=25% Similarity=0.417 Sum_probs=142.1
Q ss_pred hHHHHHHHHHHHHH-----hhhhcCCCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHH
Q 036571 77 DSEAVAYEAIVYAQ-----SLELAGDGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLY 151 (251)
Q Consensus 77 d~~~~~~~a~~~~~-----~~~~~~~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell 151 (251)
|..++..|+++-++ .+++..+++++||+|||+|+|||++|.......+.+|+|+.|++||+...++++||++||+
T Consensus 52 E~~AL~~Q~yn~Ak~~~d~~~k~~k~K~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe~Wd~wV~a~~sk~vpGA~eFl 131 (274)
T COG2503 52 EYQALYLQAYNSAKIALDTQAKKKKGKKKAVVLDLDETVLDNSAYQGYQVLNNKGFTPETWDKWVQAKKSKAVPGAVEFL 131 (274)
T ss_pred HHHHHHHHHhhhHHHHHHhhhccccCCCceEEEecchHhhcCccccchhhhcCCCCCccchHHHHhhcccccCccHHHHH
Confidence 66779999998874 3455667788999999999999999999888888999999999999999999999999999
Q ss_pred HHHHHCCCeEEEEeCCCccc-HHHHHHHHHhcCCCCc--ceEEEeCCCCCCCccccchHHHHHHHHhcCccEEEEEcCCc
Q 036571 152 KKLLSLGIKIVFLTGRPEDQ-RSVTENNLKNVGFYTW--ENLILKGSSYSGETAVVYKSSERKRLEKKGYRIIGNIGDQW 228 (251)
Q Consensus 152 ~~L~~~G~~I~~vTnR~e~~-r~~T~~~L~~~G~~~~--~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i~~~VGDq~ 228 (251)
++..++|.+|+|+|||+... .+.|+++|.++|++.- .++++..+. .-|+.+|+.++ .+|.|++.|||+.
T Consensus 132 ~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~~~~~~~llkk~~-------k~Ke~R~~~v~-k~~~iVm~vGDNl 203 (274)
T COG2503 132 NYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLPQVLESHLLLKKDK-------KSKEVRRQAVE-KDYKIVMLVGDNL 203 (274)
T ss_pred HHHHhcCcEEEEEeccchhcccchhHHHHHHcCcccccccceEEeeCC-------CcHHHHHHHHh-hccceeeEecCch
Confidence 99999999999999999776 8999999999999974 356666322 13666666665 5999999999999
Q ss_pred cccccc------------------cccCcEEEeCCCCCC
Q 036571 229 SDLLGT------------------NAGNRTFKLPDPMYY 249 (251)
Q Consensus 229 sDi~ga------------------~~g~r~f~lPnp~y~ 249 (251)
.||... .+|.++++||||||-
T Consensus 204 ~DF~d~~~k~~~~eR~Alv~~~~~~FGk~~Ii~pN~~YG 242 (274)
T COG2503 204 DDFGDNAYKKAEAERRALVKQNQKKFGKKFIILPNSMYG 242 (274)
T ss_pred hhhcchhhhhhhHHHHHHHHHHHHHhCceEEEecCCccC
Confidence 999765 379999999999994
No 6
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.89 E-value=1.2e-22 Score=177.26 Aligned_cols=143 Identities=23% Similarity=0.304 Sum_probs=106.3
Q ss_pred CCCcEEEEecCCCccCChhh--HhhhcCC--CCCC--ChHHHHHHHhc--CCCCCchHHHHHHHHHHHCCCeEEEEeCCC
Q 036571 97 DGREIWIFDIDETSLSNLPY--YAKHGFG--VEPF--NSTLFNEWVNK--GEAPSLPESLKLYKKLLSLGIKIVFLTGRP 168 (251)
Q Consensus 97 ~~~~avvfDIDgTlldn~~~--~~~~~~~--~~~~--~~~~~~~wv~~--~~~~~~pga~ell~~L~~~G~~I~~vTnR~ 168 (251)
.++.+|+||||||+|||+|| +..+.|+ ...| +++.|+.|... ..+.|.||++++|++|+++|++|+|||||+
T Consensus 61 ~~p~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~ 140 (237)
T PRK11009 61 RPPMAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGRT 140 (237)
T ss_pred CCCcEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 33559999999999998885 4444453 3446 45556666653 346788889999999999999999999999
Q ss_pred cccHHHHHHHHHh-cCC--CCcceEEEeCCCCCCCccccchHHHHHHHHhcCccEEEEEcCCccccccc-cccC---cEE
Q 036571 169 EDQRSVTENNLKN-VGF--YTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRIIGNIGDQWSDLLGT-NAGN---RTF 241 (251)
Q Consensus 169 e~~r~~T~~~L~~-~G~--~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i~~~VGDq~sDi~ga-~~g~---r~f 241 (251)
+..++.|.++|.+ +|+ ..++.+++.++.. .| ...+..+++ +.++++|||+++||.++ .+|. |++
T Consensus 141 ~~k~~~t~~~Llk~~gip~~~~f~vil~gd~~-~K------~~K~~~l~~--~~i~I~IGDs~~Di~aA~~AGi~~I~v~ 211 (237)
T PRK11009 141 ATKTETVSKTLADDFHIPADNMNPVIFAGDKP-GQ------YTKTQWLKK--KNIRIFYGDSDNDITAAREAGARGIRIL 211 (237)
T ss_pred CcccHHHHHHHHHHcCCCcccceeEEEcCCCC-CC------CCHHHHHHh--cCCeEEEcCCHHHHHHHHHcCCcEEEEe
Confidence 8878899999886 999 4556777776542 23 223334444 44689999999999998 3454 456
Q ss_pred EeCCCCC
Q 036571 242 KLPDPMY 248 (251)
Q Consensus 242 ~lPnp~y 248 (251)
.-+||+|
T Consensus 212 ~G~~~~~ 218 (237)
T PRK11009 212 RAANSTY 218 (237)
T ss_pred cCCCCCC
Confidence 6799998
No 7
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.81 E-value=3e-19 Score=155.98 Aligned_cols=139 Identities=21% Similarity=0.235 Sum_probs=100.4
Q ss_pred CCCCcEEEEecCCCccCChhhHhhhcCC---CC--C--CChHHHHHHHhcCCC--CCchHHHHHHHHHHHCCCeEEEEeC
Q 036571 96 GDGREIWIFDIDETSLSNLPYYAKHGFG---VE--P--FNSTLFNEWVNKGEA--PSLPESLKLYKKLLSLGIKIVFLTG 166 (251)
Q Consensus 96 ~~~~~avvfDIDgTlldn~~~~~~~~~~---~~--~--~~~~~~~~wv~~~~~--~~~pga~ell~~L~~~G~~I~~vTn 166 (251)
+.++.+|+|||||||+||.+++ .++.. .+ . .++..|+.|...... .+.+++.++|++|+++|++++|+||
T Consensus 60 ~~~p~aViFDlDgTLlDSs~~~-~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTn 138 (237)
T TIGR01672 60 GRPPIAVSFDIDDTVLFSSPGF-WRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTG 138 (237)
T ss_pred CCCCeEEEEeCCCccccCcHHH-hCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEEeC
Confidence 3444599999999999999987 22211 11 1 144779999877654 5666699999999999999999999
Q ss_pred CCcccHHHHHHHHH-hcCCCCcceEEEeCCCC-CCCccccchHHHHHHHHhcCccEEEEEcCCccccccc-cccCcEEEe
Q 036571 167 RPEDQRSVTENNLK-NVGFYTWENLILKGSSY-SGETAVVYKSSERKRLEKKGYRIIGNIGDQWSDLLGT-NAGNRTFKL 243 (251)
Q Consensus 167 R~e~~r~~T~~~L~-~~G~~~~~~lilr~~~~-~~kp~~~~K~~~r~~L~~~g~~i~~~VGDq~sDi~ga-~~g~r~f~l 243 (251)
|.+..++.+.++|. .+|++.++.+++.++.. .+||.+ +..+++ +.++++|||+.+||.++ ++|.+++.+
T Consensus 139 r~~~k~~~~a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~~------~~~l~~--~~i~i~vGDs~~DI~aAk~AGi~~I~V 210 (237)
T TIGR01672 139 RTPGKTDTVSKTLAKNFHIPAMNPVIFAGDKPGQYQYTK------TQWIQD--KNIRIHYGDSDNDITAAKEAGARGIRI 210 (237)
T ss_pred CCCCcCHHHHHHHHHHhCCchheeEEECCCCCCCCCCCH------HHHHHh--CCCeEEEeCCHHHHHHHHHCCCCEEEE
Confidence 97654555555555 69999888888876653 344421 223443 44689999999999988 568887655
No 8
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.63 E-value=3e-15 Score=129.10 Aligned_cols=96 Identities=21% Similarity=0.250 Sum_probs=75.7
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCC-CCCCccccchHHHHHHHHhcCcc
Q 036571 141 APSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSS-YSGETAVVYKSSERKRLEKKGYR 219 (251)
Q Consensus 141 ~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~L~~~g~~ 219 (251)
..++||+.++|..|+++|++++++||++ +..+...|+.+|+..+|..+...++ ..+||.|......... .|..
T Consensus 88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~---~~~~~~~l~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~---~~~~ 161 (220)
T COG0546 88 SRLFPGVKELLAALKSAGYKLGIVTNKP---ERELDILLKALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEK---LGLD 161 (220)
T ss_pred CccCCCHHHHHHHHHhCCCeEEEEeCCc---HHHHHHHHHHhCCccccceEEcCCCCCCCCcCHHHHHHHHHH---hCCC
Confidence 4799999999999999999999999999 6688888899999999988888443 5677766544333333 3444
Q ss_pred --EEEEEcCCcccccccc-ccCcEEE
Q 036571 220 --IIGNIGDQWSDLLGTN-AGNRTFK 242 (251)
Q Consensus 220 --i~~~VGDq~sDi~ga~-~g~r~f~ 242 (251)
.+++|||+..|+.+|+ +|..++-
T Consensus 162 ~~~~l~VGDs~~Di~aA~~Ag~~~v~ 187 (220)
T COG0546 162 PEEALMVGDSLNDILAAKAAGVPAVG 187 (220)
T ss_pred hhheEEECCCHHHHHHHHHcCCCEEE
Confidence 6899999999999994 4545443
No 9
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.62 E-value=2e-15 Score=130.65 Aligned_cols=102 Identities=17% Similarity=0.123 Sum_probs=76.2
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCC-CCCCccccchHHHHHHHHhcC-
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSS-YSGETAVVYKSSERKRLEKKG- 217 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~L~~~g- 217 (251)
...++||+.++|+.|+++|++++++||.+ +......|+.+|+..+++.++.+++ ..+||.+...... +++.|
T Consensus 91 ~~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~---~~~~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~---~~~~~~ 164 (224)
T PRK14988 91 RAVLREDTVPFLEALKASGKRRILLTNAH---PHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAV---AEHTGL 164 (224)
T ss_pred cCCcCCCHHHHHHHHHhCCCeEEEEeCcC---HHHHHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHH---HHHcCC
Confidence 36789999999999999999999999987 6666777888999877776666554 4677766432221 22233
Q ss_pred -ccEEEEEcCCccccccc-cccCcE-EEeCCCC
Q 036571 218 -YRIIGNIGDQWSDLLGT-NAGNRT-FKLPDPM 247 (251)
Q Consensus 218 -~~i~~~VGDq~sDi~ga-~~g~r~-f~lPnp~ 247 (251)
...+++|||+.+|+++| .+|.++ +.++||-
T Consensus 165 ~p~~~l~igDs~~di~aA~~aG~~~~~~v~~~~ 197 (224)
T PRK14988 165 KAERTLFIDDSEPILDAAAQFGIRYCLGVTNPD 197 (224)
T ss_pred ChHHEEEEcCCHHHHHHHHHcCCeEEEEEeCCC
Confidence 34599999999999998 468874 5577663
No 10
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.61 E-value=6.6e-15 Score=129.18 Aligned_cols=101 Identities=19% Similarity=0.113 Sum_probs=78.1
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCC-CCCCccccchHHHHHHHHhcCc
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSS-YSGETAVVYKSSERKRLEKKGY 218 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~L~~~g~ 218 (251)
..+++||+.++|+.|+++|++++++||++ +..+...|+++|+..+++.++.+++ ..+||.+.......+.+. ...
T Consensus 106 ~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~---~~~~~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~-~~~ 181 (248)
T PLN02770 106 QLKPLNGLYKLKKWIEDRGLKRAAVTNAP---RENAELMISLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEVLK-VSK 181 (248)
T ss_pred cCCcCccHHHHHHHHHHcCCeEEEEeCCC---HHHHHHHHHHcCChhhCcEEEecCcCCCCCCChHHHHHHHHHhC-CCh
Confidence 47889999999999999999999999998 7788889999999988887777665 467777643222222221 113
Q ss_pred cEEEEEcCCccccccc-cccCcEEEeC
Q 036571 219 RIIGNIGDQWSDLLGT-NAGNRTFKLP 244 (251)
Q Consensus 219 ~i~~~VGDq~sDi~ga-~~g~r~f~lP 244 (251)
..+++|||+.+|+++| ++|.+++.+.
T Consensus 182 ~~~l~vgDs~~Di~aA~~aGi~~i~v~ 208 (248)
T PLN02770 182 DHTFVFEDSVSGIKAGVAAGMPVVGLT 208 (248)
T ss_pred hHEEEEcCCHHHHHHHHHCCCEEEEEe
Confidence 4589999999999999 5688877664
No 11
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.61 E-value=7.3e-15 Score=127.32 Aligned_cols=100 Identities=14% Similarity=0.163 Sum_probs=75.8
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCC-CCCCccccchHHHHHHHHhcCc
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSS-YSGETAVVYKSSERKRLEKKGY 218 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~L~~~g~ 218 (251)
..+++||+.++++.|+++|++++++||++ +......|+.+|+..+++.++..+. ..+||.+.......+.+. ...
T Consensus 93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~---~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~-~~p 168 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAGCVWGIVTNKP---EYLARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIG-VAP 168 (229)
T ss_pred cCeeCCCHHHHHHHHHHCCCeEEEECCCC---HHHHHHHHHHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhC-CCh
Confidence 36889999999999999999999999998 5566778889999887887777654 467777653222222222 123
Q ss_pred cEEEEEcCCccccccc-cccCcEEEe
Q 036571 219 RIIGNIGDQWSDLLGT-NAGNRTFKL 243 (251)
Q Consensus 219 ~i~~~VGDq~sDi~ga-~~g~r~f~l 243 (251)
..+++|||+.+|+.++ .+|.+++.+
T Consensus 169 ~~~l~IGDs~~Di~aA~~aG~~~i~v 194 (229)
T PRK13226 169 TDCVYVGDDERDILAARAAGMPSVAA 194 (229)
T ss_pred hhEEEeCCCHHHHHHHHHCCCcEEEE
Confidence 4689999999999998 468887654
No 12
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.61 E-value=3.2e-15 Score=129.28 Aligned_cols=142 Identities=21% Similarity=0.325 Sum_probs=104.8
Q ss_pred CcEEEEecCCCccCChhhHhhhc------CCCC---------------------------C--CChHHHHHHHh------
Q 036571 99 REIWIFDIDETSLSNLPYYAKHG------FGVE---------------------------P--FNSTLFNEWVN------ 137 (251)
Q Consensus 99 ~~avvfDIDgTlldn~~~~~~~~------~~~~---------------------------~--~~~~~~~~wv~------ 137 (251)
.+++|||+||||+||.+.+.+.+ +|-. . .....-..+..
T Consensus 2 ~~avIFD~DGvLvDse~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (221)
T COG0637 2 IKAVIFDMDGTLVDSEPLHARAWLEALKEYGIEISDEEIRELHGGGIARIIDLLRKLAAGEDPADLAELERLLYEAEALE 81 (221)
T ss_pred CcEEEEcCCCCcCcchHHHHHHHHHHHHHcCCCCCHHHHHHHHCCChHHHHHHHHHHhcCCcccCHHHHHHHHHHHHHhh
Confidence 58999999999999988765521 2210 0 01101111111
Q ss_pred cCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCC-CCCCcccc-c-hHHHHHHHH
Q 036571 138 KGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSS-YSGETAVV-Y-KSSERKRLE 214 (251)
Q Consensus 138 ~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~-~-K~~~r~~L~ 214 (251)
....+++||+.++++.|+++|+++++.|+++ +..+...|..+|+..+++.++.+++ .++||+|. | +...+..+
T Consensus 82 ~~~~~~~pGv~~~l~~L~~~~i~~avaS~s~---~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv- 157 (221)
T COG0637 82 LEGLKPIPGVVELLEQLKARGIPLAVASSSP---RRAAERVLARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGV- 157 (221)
T ss_pred hcCCCCCccHHHHHHHHHhcCCcEEEecCCh---HHHHHHHHHHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCC-
Confidence 1457999999999999999999999999998 8889999999999988887777665 57888885 4 33332222
Q ss_pred hcCccEEEEEcCCccccccc-cccCcEEEeCCC
Q 036571 215 KKGYRIIGNIGDQWSDLLGT-NAGNRTFKLPDP 246 (251)
Q Consensus 215 ~~g~~i~~~VGDq~sDi~ga-~~g~r~f~lPnp 246 (251)
....|+.|+|++++++++ .+|+++|.+|++
T Consensus 158 --~P~~CvviEDs~~Gi~Aa~aAGm~vv~v~~~ 188 (221)
T COG0637 158 --DPEECVVVEDSPAGIQAAKAAGMRVVGVPAG 188 (221)
T ss_pred --ChHHeEEEecchhHHHHHHHCCCEEEEecCC
Confidence 234699999999999999 579999999983
No 13
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.61 E-value=7.5e-15 Score=125.40 Aligned_cols=141 Identities=17% Similarity=0.181 Sum_probs=96.2
Q ss_pred CcEEEEecCCCccCChhhHhhh------cCCCC--------------------CCChHHHHHHHh----------cCCCC
Q 036571 99 REIWIFDIDETSLSNLPYYAKH------GFGVE--------------------PFNSTLFNEWVN----------KGEAP 142 (251)
Q Consensus 99 ~~avvfDIDgTlldn~~~~~~~------~~~~~--------------------~~~~~~~~~wv~----------~~~~~ 142 (251)
+++||||+||||+|+.+.+... .++.. .+.++.+++.+. ....+
T Consensus 3 ~~~viFD~DGTL~ds~~~~~~a~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (214)
T PRK13288 3 INTVLFDLDGTLINTNELIISSFLHTLKTYYPNQYKREDVLPFIGPSLHDTFSKIDESKVEEMITTYREFNHEHHDELVT 82 (214)
T ss_pred ccEEEEeCCCcCccCHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCcCHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 5799999999999997754331 11110 012222222211 12357
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCC-CCCCccccchHHHHHHHHhcCccEE
Q 036571 143 SLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSS-YSGETAVVYKSSERKRLEKKGYRII 221 (251)
Q Consensus 143 ~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~L~~~g~~i~ 221 (251)
++||+.++|+.|+++|++++++||+. +..+...|+.+|+..+++.++..++ ..+||.+.........+. .....+
T Consensus 83 ~~~g~~~~l~~L~~~g~~~~i~S~~~---~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~-~~~~~~ 158 (214)
T PRK13288 83 EYETVYETLKTLKKQGYKLGIVTTKM---RDTVEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLG-AKPEEA 158 (214)
T ss_pred cCcCHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcC-CCHHHE
Confidence 89999999999999999999999998 6677888999999988887877665 356665543222222221 123458
Q ss_pred EEEcCCccccccc-cccCcEEEe
Q 036571 222 GNIGDQWSDLLGT-NAGNRTFKL 243 (251)
Q Consensus 222 ~~VGDq~sDi~ga-~~g~r~f~l 243 (251)
++|||+.+|+.++ .+|.+++.+
T Consensus 159 ~~iGDs~~Di~aa~~aG~~~i~v 181 (214)
T PRK13288 159 LMVGDNHHDILAGKNAGTKTAGV 181 (214)
T ss_pred EEECCCHHHHHHHHHCCCeEEEE
Confidence 9999999999999 467776654
No 14
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.61 E-value=5.8e-15 Score=126.38 Aligned_cols=100 Identities=25% Similarity=0.320 Sum_probs=76.1
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCC--CcceEEEeCCC-CCCCccccchHHHHHHHHhc
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFY--TWENLILKGSS-YSGETAVVYKSSERKRLEKK 216 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~--~~~~lilr~~~-~~~kp~~~~K~~~r~~L~~~ 216 (251)
..+++||+.++|+.|+++|++++++||+. +......|+.+|+. .+++.++..++ ...||.+..-. ..+++.
T Consensus 85 ~~~l~~G~~~~L~~L~~~g~~~~ivT~~~---~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~---~a~~~~ 158 (220)
T TIGR03351 85 PPVALPGAEEAFRSLRSSGIKVALTTGFD---RDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLIL---RAMELT 158 (220)
T ss_pred CCccCCCHHHHHHHHHHCCCEEEEEeCCc---hHHHHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHH---HHHHHc
Confidence 35799999999999999999999999998 56777788888987 66777776655 35677664322 222333
Q ss_pred C---ccEEEEEcCCccccccc-cccCcE-EEeCC
Q 036571 217 G---YRIIGNIGDQWSDLLGT-NAGNRT-FKLPD 245 (251)
Q Consensus 217 g---~~i~~~VGDq~sDi~ga-~~g~r~-f~lPn 245 (251)
| ...+++|||+++|+.++ ++|.++ +.+..
T Consensus 159 ~~~~~~~~~~igD~~~Di~aa~~aG~~~~i~~~~ 192 (220)
T TIGR03351 159 GVQDVQSVAVAGDTPNDLEAGINAGAGAVVGVLT 192 (220)
T ss_pred CCCChhHeEEeCCCHHHHHHHHHCCCCeEEEEec
Confidence 3 34689999999999999 578888 66543
No 15
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.60 E-value=6.8e-15 Score=128.97 Aligned_cols=100 Identities=21% Similarity=0.202 Sum_probs=76.8
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcc-eEEEeCCC-CCCCccccchHHHHHHHHhcC
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWE-NLILKGSS-YSGETAVVYKSSERKRLEKKG 217 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~-~lilr~~~-~~~kp~~~~K~~~r~~L~~~g 217 (251)
..+++||+.++|+.|+++|++++++||++ +..+...|+++|+..++ +.++.+++ ..+||.+... ...+++.|
T Consensus 97 ~~~~~pg~~e~L~~L~~~g~~l~IvT~~~---~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~---~~a~~~l~ 170 (253)
T TIGR01422 97 YSSPIPGVIEVIAYLRARGIKIGSTTGYT---REMMDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWMA---LKNAIELG 170 (253)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEECCCc---HHHHHHHHHHHHhcCCCCceEEccccCCCCCCCHHHH---HHHHHHcC
Confidence 46899999999999999999999999998 66777888888888764 66666654 3677766432 22223333
Q ss_pred ---ccEEEEEcCCccccccc-cccCcEEEeCC
Q 036571 218 ---YRIIGNIGDQWSDLLGT-NAGNRTFKLPD 245 (251)
Q Consensus 218 ---~~i~~~VGDq~sDi~ga-~~g~r~f~lPn 245 (251)
...+++|||+++|+.+| ++|.+++.++.
T Consensus 171 ~~~~~~~l~IGDs~~Di~aA~~aGi~~i~v~~ 202 (253)
T TIGR01422 171 VYDVAACVKVGDTVPDIEEGRNAGMWTVGLIL 202 (253)
T ss_pred CCCchheEEECCcHHHHHHHHHCCCeEEEEec
Confidence 24589999999999999 57888888754
No 16
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.59 E-value=1.1e-14 Score=134.99 Aligned_cols=102 Identities=15% Similarity=0.165 Sum_probs=79.6
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCC-CCCCccccchHHHHHHHHhcCc
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSS-YSGETAVVYKSSERKRLEKKGY 218 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~L~~~g~ 218 (251)
...++||+.++|+.|+++|++++++||++ +..+...|+++|+..+++.++..++ ..+||.+.......+.+. ...
T Consensus 214 ~~~l~pGa~ElL~~Lk~~GiklaIaSn~~---~~~~~~~L~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~lg-l~P 289 (381)
T PLN02575 214 IYRLRTGSQEFVNVLMNYKIPMALVSTRP---RKTLENAIGSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLLN-FIP 289 (381)
T ss_pred CCCcCcCHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHHcCCHHHceEEEecCcCCCCCCCHHHHHHHHHHcC-CCc
Confidence 46789999999999999999999999999 7888899999999988888887766 357877643222222221 123
Q ss_pred cEEEEEcCCccccccc-cccCcEEEeCC
Q 036571 219 RIIGNIGDQWSDLLGT-NAGNRTFKLPD 245 (251)
Q Consensus 219 ~i~~~VGDq~sDi~ga-~~g~r~f~lPn 245 (251)
..+++|||+.+|+++| ++|.+++.+.+
T Consensus 290 eecl~IGDS~~DIeAAk~AGm~~IgV~~ 317 (381)
T PLN02575 290 ERCIVFGNSNQTVEAAHDARMKCVAVAS 317 (381)
T ss_pred ccEEEEcCCHHHHHHHHHcCCEEEEECC
Confidence 4699999999999999 46888887754
No 17
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.59 E-value=1.2e-14 Score=128.76 Aligned_cols=99 Identities=17% Similarity=0.225 Sum_probs=77.8
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCCC-CCCcccc-chHHHHHHHHhcC
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSSY-SGETAVV-YKSSERKRLEKKG 217 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~~-~~kp~~~-~K~~~r~~L~~~g 217 (251)
..+++||+.++|+.|+++|++++++||++ +..+...|+.+|+..+++.++.+++. .+||.+. |.. .+++.|
T Consensus 107 ~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~---~~~~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~----a~~~l~ 179 (260)
T PLN03243 107 LYRLRPGSREFVQALKKHEIPIAVASTRP---RRYLERAIEAVGMEGFFSVVLAAEDVYRGKPDPEMFMY----AAERLG 179 (260)
T ss_pred CcccCCCHHHHHHHHHHCCCEEEEEeCcC---HHHHHHHHHHcCCHhhCcEEEecccCCCCCCCHHHHHH----HHHHhC
Confidence 46789999999999999999999999998 66778888999998888877776653 5788764 322 222333
Q ss_pred c--cEEEEEcCCccccccc-cccCcEEEeCC
Q 036571 218 Y--RIIGNIGDQWSDLLGT-NAGNRTFKLPD 245 (251)
Q Consensus 218 ~--~i~~~VGDq~sDi~ga-~~g~r~f~lPn 245 (251)
. ..+++|||+.+|+.+| ++|.+++.+.+
T Consensus 180 ~~p~~~l~IgDs~~Di~aA~~aG~~~i~v~g 210 (260)
T PLN03243 180 FIPERCIVFGNSNSSVEAAHDGCMKCVAVAG 210 (260)
T ss_pred CChHHeEEEcCCHHHHHHHHHcCCEEEEEec
Confidence 3 3589999999999999 46888877753
No 18
>PRK11587 putative phosphatase; Provisional
Probab=99.58 E-value=1.7e-14 Score=123.89 Aligned_cols=100 Identities=17% Similarity=0.177 Sum_probs=71.8
Q ss_pred CCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCC-CCCCccccchHHHHHHHHhcC
Q 036571 139 GEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSS-YSGETAVVYKSSERKRLEKKG 217 (251)
Q Consensus 139 ~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~L~~~g 217 (251)
...+++||+.++|+.|+++|++++++||++ +..+...|...|+.. +..++..++ ..+||.+..... .++..|
T Consensus 80 ~~~~~~pg~~e~L~~L~~~g~~~~ivTn~~---~~~~~~~l~~~~l~~-~~~i~~~~~~~~~KP~p~~~~~---~~~~~g 152 (218)
T PRK11587 80 EGITALPGAIALLNHLNKLGIPWAIVTSGS---VPVASARHKAAGLPA-PEVFVTAERVKRGKPEPDAYLL---GAQLLG 152 (218)
T ss_pred cCceeCcCHHHHHHHHHHcCCcEEEEcCCC---chHHHHHHHhcCCCC-ccEEEEHHHhcCCCCCcHHHHH---HHHHcC
Confidence 356899999999999999999999999987 345566777888864 445555443 356776642221 222223
Q ss_pred --ccEEEEEcCCccccccc-cccCcEEEeCC
Q 036571 218 --YRIIGNIGDQWSDLLGT-NAGNRTFKLPD 245 (251)
Q Consensus 218 --~~i~~~VGDq~sDi~ga-~~g~r~f~lPn 245 (251)
...+++|||+.+|+.+| ++|.+++.+.+
T Consensus 153 ~~p~~~l~igDs~~di~aA~~aG~~~i~v~~ 183 (218)
T PRK11587 153 LAPQECVVVEDAPAGVLSGLAAGCHVIAVNA 183 (218)
T ss_pred CCcccEEEEecchhhhHHHHHCCCEEEEECC
Confidence 35699999999999999 46777776654
No 19
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.57 E-value=1.9e-14 Score=128.39 Aligned_cols=140 Identities=17% Similarity=0.237 Sum_probs=96.5
Q ss_pred CCCcEEEEecCCCccCChhhHhhh------cCCCC----------------------CCChHHHH-------HHHhc--C
Q 036571 97 DGREIWIFDIDETSLSNLPYYAKH------GFGVE----------------------PFNSTLFN-------EWVNK--G 139 (251)
Q Consensus 97 ~~~~avvfDIDgTlldn~~~~~~~------~~~~~----------------------~~~~~~~~-------~wv~~--~ 139 (251)
+.++++|||+||||+|+.+.+... .+|.. .++.+.+. +.... .
T Consensus 60 ~~~k~vIFDlDGTLiDS~~~~~~a~~~~~~~~G~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (273)
T PRK13225 60 QTLQAIIFDFDGTLVDSLPTVVAIANAHAPDFGYDPIDERDYAQLRQWSSRTIVRRAGLSPWQQARLLQRVQRQLGDCLP 139 (273)
T ss_pred hhcCEEEECCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhCccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcc
Confidence 457899999999999998755431 12211 01111111 11111 3
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcC--
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKG-- 217 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g-- 217 (251)
..+++||+.++|+.|+++|++++++||.. +..+...|+.+|+..+++.+...+...+|+ ......+++.+
T Consensus 140 ~~~l~pg~~e~L~~L~~~gi~laIvSn~~---~~~~~~~L~~~gl~~~F~~vi~~~~~~~k~-----~~~~~~l~~~~~~ 211 (273)
T PRK13225 140 ALQLFPGVADLLAQLRSRSLCLGILSSNS---RQNIEAFLQRQGLRSLFSVVQAGTPILSKR-----RALSQLVAREGWQ 211 (273)
T ss_pred cCCcCCCHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHHcCChhheEEEEecCCCCCCH-----HHHHHHHHHhCcC
Confidence 45789999999999999999999999998 778888899999988887776655433343 22222233333
Q ss_pred ccEEEEEcCCccccccc-cccCcEEEeC
Q 036571 218 YRIIGNIGDQWSDLLGT-NAGNRTFKLP 244 (251)
Q Consensus 218 ~~i~~~VGDq~sDi~ga-~~g~r~f~lP 244 (251)
...+++|||+.+|+.++ ++|.+++.++
T Consensus 212 p~~~l~IGDs~~Di~aA~~AG~~~I~v~ 239 (273)
T PRK13225 212 PAAVMYVGDETRDVEAARQVGLIAVAVT 239 (273)
T ss_pred hhHEEEECCCHHHHHHHHHCCCeEEEEe
Confidence 24689999999999999 4688877664
No 20
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.57 E-value=4.5e-14 Score=121.36 Aligned_cols=101 Identities=16% Similarity=0.188 Sum_probs=79.9
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCC-CCCCccccchHHHHHHHHhcCc
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSS-YSGETAVVYKSSERKRLEKKGY 218 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~L~~~g~ 218 (251)
..+++||+.++++.|+++|++++++||.. +..+...|+.+|+..+++.++..+. ..+||.+.. .+..+++.|.
T Consensus 90 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~---~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~---~~~~~~~~~~ 163 (222)
T PRK10826 90 TRPLLPGVREALALCKAQGLKIGLASASP---LHMLEAVLTMFDLRDYFDALASAEKLPYSKPHPEV---YLNCAAKLGV 163 (222)
T ss_pred CCCCCCCHHHHHHHHHHCCCeEEEEeCCc---HHHHHHHHHhCcchhcccEEEEcccCCCCCCCHHH---HHHHHHHcCC
Confidence 46899999999999999999999999988 6677888899999888877776654 356766542 2233333443
Q ss_pred --cEEEEEcCCccccccc-cccCcEEEeCCC
Q 036571 219 --RIIGNIGDQWSDLLGT-NAGNRTFKLPDP 246 (251)
Q Consensus 219 --~i~~~VGDq~sDi~ga-~~g~r~f~lPnp 246 (251)
..+++|||+.+|+.+| .+|.+++-+++|
T Consensus 164 ~~~~~~~igDs~~Di~aA~~aG~~~i~v~~~ 194 (222)
T PRK10826 164 DPLTCVALEDSFNGMIAAKAARMRSIVVPAP 194 (222)
T ss_pred CHHHeEEEcCChhhHHHHHHcCCEEEEecCC
Confidence 4689999999999999 678898888765
No 21
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.56 E-value=3.1e-14 Score=120.88 Aligned_cols=98 Identities=17% Similarity=0.239 Sum_probs=74.9
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCC-CCCCccccchHHHHHHHHhcC-
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSS-YSGETAVVYKSSERKRLEKKG- 217 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~L~~~g- 217 (251)
..+++||+.++|+.|+++|++++++||++ +..+...|+++|+..+++.++..++ ...||.+..-. ..+++.|
T Consensus 83 ~~~~~~g~~~~L~~l~~~g~~~~i~S~~~---~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~---~~~~~~~~ 156 (213)
T TIGR01449 83 LTSVFPGVEATLGALRAKGLRLGLVTNKP---TPLARPLLELLGLAKYFSVLIGGDSLAQRKPHPDPLL---LAAERLGV 156 (213)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHHcCcHhhCcEEEecCCCCCCCCChHHHH---HHHHHcCC
Confidence 35789999999999999999999999997 6678889999999887777776654 35677654322 2222333
Q ss_pred -ccEEEEEcCCccccccc-cccCcEEEe
Q 036571 218 -YRIIGNIGDQWSDLLGT-NAGNRTFKL 243 (251)
Q Consensus 218 -~~i~~~VGDq~sDi~ga-~~g~r~f~l 243 (251)
...+++|||+.+|+.++ ++|.+++.+
T Consensus 157 ~~~~~~~igDs~~d~~aa~~aG~~~i~v 184 (213)
T TIGR01449 157 APQQMVYVGDSRVDIQAARAAGCPSVLL 184 (213)
T ss_pred ChhHeEEeCCCHHHHHHHHHCCCeEEEE
Confidence 34589999999999998 467777655
No 22
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.56 E-value=2.6e-14 Score=118.65 Aligned_cols=95 Identities=19% Similarity=0.179 Sum_probs=70.1
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCC-CCCCccccchHHHHHHHHhcCc-
Q 036571 141 APSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSS-YSGETAVVYKSSERKRLEKKGY- 218 (251)
Q Consensus 141 ~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~L~~~g~- 218 (251)
..++||+.++|+.|+++|++++++||+.. ....|+++|+..+++.++.+++ ...||.+..- +..+++.+.
T Consensus 86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~~-----~~~~l~~~~l~~~f~~~~~~~~~~~~kp~p~~~---~~~~~~~~~~ 157 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKKNNIKIALASASKN-----APTVLEKLGLIDYFDAIVDPAEIKKGKPDPEIF---LAAAEGLGVS 157 (185)
T ss_pred cccCccHHHHHHHHHHCCCeEEEEeCCcc-----HHHHHHhcCcHhhCcEEEehhhcCCCCCChHHH---HHHHHHcCCC
Confidence 47899999999999999999999999752 1346888999887777776554 3567766432 122223333
Q ss_pred -cEEEEEcCCccccccc-cccCcEEEe
Q 036571 219 -RIIGNIGDQWSDLLGT-NAGNRTFKL 243 (251)
Q Consensus 219 -~i~~~VGDq~sDi~ga-~~g~r~f~l 243 (251)
..+++|||+.+|+.+| .+|.+++.+
T Consensus 158 ~~~~v~vgD~~~di~aA~~aG~~~i~v 184 (185)
T TIGR01990 158 PSECIGIEDAQAGIEAIKAAGMFAVGV 184 (185)
T ss_pred HHHeEEEecCHHHHHHHHHcCCEEEec
Confidence 3589999999999999 468887754
No 23
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.55 E-value=4.5e-14 Score=119.83 Aligned_cols=99 Identities=20% Similarity=0.238 Sum_probs=73.8
Q ss_pred CCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCC-CCCCccccchHHHHHHHHhcC
Q 036571 139 GEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSS-YSGETAVVYKSSERKRLEKKG 217 (251)
Q Consensus 139 ~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~L~~~g 217 (251)
...+++||+.++|++|+++|++++++||++ +..+...|+.+|+..+++.++..++ ..+||.+... +..+++.|
T Consensus 72 ~~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~---~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~---~~~~~~~~ 145 (205)
T TIGR01454 72 GEVEVFPGVPELLAELRADGVGTAIATGKS---GPRARSLLEALGLLPLFDHVIGSDEVPRPKPAPDIV---REALRLLD 145 (205)
T ss_pred cccccCCCHHHHHHHHHHCCCeEEEEeCCc---hHHHHHHHHHcCChhheeeEEecCcCCCCCCChHHH---HHHHHHcC
Confidence 346889999999999999999999999998 6667788899999877776666544 3567655322 22223333
Q ss_pred c--cEEEEEcCCccccccc-cccCcEEEe
Q 036571 218 Y--RIIGNIGDQWSDLLGT-NAGNRTFKL 243 (251)
Q Consensus 218 ~--~i~~~VGDq~sDi~ga-~~g~r~f~l 243 (251)
. ..+++|||+.+|+.+| ++|.+++.+
T Consensus 146 ~~~~~~l~igD~~~Di~aA~~~Gi~~i~~ 174 (205)
T TIGR01454 146 VPPEDAVMVGDAVTDLASARAAGTATVAA 174 (205)
T ss_pred CChhheEEEcCCHHHHHHHHHcCCeEEEE
Confidence 3 4589999999999998 457776544
No 24
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.55 E-value=6.5e-14 Score=118.09 Aligned_cols=102 Identities=15% Similarity=0.097 Sum_probs=76.3
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCC-CCCCccccchHHHHHHHHhcCc
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSS-YSGETAVVYKSSERKRLEKKGY 218 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~L~~~g~ 218 (251)
..+++||+.++|+.|+++|++++++||.+ .......|+++|+..+++.++..++ ...||.+.......+.+. ...
T Consensus 90 ~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~---~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~-~~p 165 (198)
T TIGR01428 90 RLPPHPDVPAGLRALKERGYRLAILSNGS---PAMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEALG-VPP 165 (198)
T ss_pred cCCCCCCHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHHHhC-CCh
Confidence 46789999999999999999999999998 5677788888999877776666554 456776643222222221 123
Q ss_pred cEEEEEcCCccccccc-cccCcEEEeCC
Q 036571 219 RIIGNIGDQWSDLLGT-NAGNRTFKLPD 245 (251)
Q Consensus 219 ~i~~~VGDq~sDi~ga-~~g~r~f~lPn 245 (251)
..+++|||+.+|+.+| .+|.+++.+..
T Consensus 166 ~~~~~vgD~~~Di~~A~~~G~~~i~v~r 193 (198)
T TIGR01428 166 DEVLFVASNPWDLGGAKKFGFKTAWVNR 193 (198)
T ss_pred hhEEEEeCCHHHHHHHHHCCCcEEEecC
Confidence 4689999999999999 56888877654
No 25
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.55 E-value=4.1e-14 Score=120.97 Aligned_cols=101 Identities=14% Similarity=0.150 Sum_probs=75.8
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCC-CCCCccccchHHHHHHHHhcCc
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSS-YSGETAVVYKSSERKRLEKKGY 218 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~L~~~g~ 218 (251)
..+++||+.++|++|+++|++++++||.+ +......|+++|+..+++.++.+++ ...||.+..... .+++.|.
T Consensus 92 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~---~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~---~~~~~~~ 165 (221)
T TIGR02253 92 YLRVYPGVRDTLMELRESGYRLGIITDGL---PVKQWEKLERLGVRDFFDAVITSEEEGVEKPHPKIFYA---ALKRLGV 165 (221)
T ss_pred hCCCCCCHHHHHHHHHHCCCEEEEEeCCc---hHHHHHHHHhCChHHhccEEEEeccCCCCCCCHHHHHH---HHHHcCC
Confidence 35899999999999999999999999998 5566778899999877766665544 457776642222 2223333
Q ss_pred --cEEEEEcCCc-ccccccc-ccCcEEEeCCC
Q 036571 219 --RIIGNIGDQW-SDLLGTN-AGNRTFKLPDP 246 (251)
Q Consensus 219 --~i~~~VGDq~-sDi~ga~-~g~r~f~lPnp 246 (251)
..+++|||++ +|+.+|. +|.+++-++.+
T Consensus 166 ~~~~~~~igDs~~~di~~A~~aG~~~i~~~~~ 197 (221)
T TIGR02253 166 KPEEAVMVGDRLDKDIKGAKNLGMKTVWINQG 197 (221)
T ss_pred ChhhEEEECCChHHHHHHHHHCCCEEEEECCC
Confidence 4589999998 8999994 68888777654
No 26
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.53 E-value=1.5e-13 Score=122.33 Aligned_cols=99 Identities=18% Similarity=0.208 Sum_probs=73.7
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCC-CCCCccccchHHHHHHHHhcCc-
Q 036571 141 APSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSS-YSGETAVVYKSSERKRLEKKGY- 218 (251)
Q Consensus 141 ~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~L~~~g~- 218 (251)
.+++||+.++++.|+++|++++++||.+ +......|..+|+..+++.++..+. ...||.+..-.. .+++.|.
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~---~~~~~~~l~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~---~~~~~g~~ 173 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKP---ERFVAPLLDQMKIGRYFRWIIGGDTLPQKKPDPAALLF---VMKMAGVP 173 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCc---HHHHHHHHHHcCcHhhCeEEEecCCCCCCCCCcHHHHH---HHHHhCCC
Confidence 5689999999999999999999999988 4566678888899877777776654 345665542212 2222333
Q ss_pred -cEEEEEcCCccccccc-cccCcEEEeCC
Q 036571 219 -RIIGNIGDQWSDLLGT-NAGNRTFKLPD 245 (251)
Q Consensus 219 -~i~~~VGDq~sDi~ga-~~g~r~f~lPn 245 (251)
..+++|||+.+|+.++ .+|.+++-+++
T Consensus 174 ~~~~l~IGD~~~Di~aA~~aGi~~i~v~~ 202 (272)
T PRK13223 174 PSQSLFVGDSRSDVLAAKAAGVQCVALSY 202 (272)
T ss_pred hhHEEEECCCHHHHHHHHHCCCeEEEEec
Confidence 4589999999999998 46777766644
No 27
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.53 E-value=1e-13 Score=122.67 Aligned_cols=99 Identities=19% Similarity=0.164 Sum_probs=72.9
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCc-ceEEEeCCC-CCCCccccchHHHHHHHHhcC
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTW-ENLILKGSS-YSGETAVVYKSSERKRLEKKG 217 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~-~~lilr~~~-~~~kp~~~~K~~~r~~L~~~g 217 (251)
...++||+.++|+.|+++|++++++||.+ +..+...|+.+|+..+ ++.++..++ ...||.|..- ...+++.|
T Consensus 99 ~~~~~pg~~elL~~L~~~g~~l~I~T~~~---~~~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~---~~a~~~l~ 172 (267)
T PRK13478 99 YATPIPGVLEVIAALRARGIKIGSTTGYT---REMMDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMA---LKNAIELG 172 (267)
T ss_pred cCCCCCCHHHHHHHHHHCCCEEEEEcCCc---HHHHHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHH---HHHHHHcC
Confidence 46889999999999999999999999998 5666777777776554 356666554 3567766432 22223333
Q ss_pred ---ccEEEEEcCCccccccc-cccCcEEEeC
Q 036571 218 ---YRIIGNIGDQWSDLLGT-NAGNRTFKLP 244 (251)
Q Consensus 218 ---~~i~~~VGDq~sDi~ga-~~g~r~f~lP 244 (251)
...+++|||+.+|+.+| ++|.+++-+.
T Consensus 173 ~~~~~e~l~IGDs~~Di~aA~~aG~~~i~v~ 203 (267)
T PRK13478 173 VYDVAACVKVDDTVPGIEEGLNAGMWTVGVI 203 (267)
T ss_pred CCCCcceEEEcCcHHHHHHHHHCCCEEEEEc
Confidence 24689999999999999 5688777664
No 28
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.51 E-value=1.1e-13 Score=116.97 Aligned_cols=91 Identities=16% Similarity=0.108 Sum_probs=67.7
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCccEE
Q 036571 142 PSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRII 221 (251)
Q Consensus 142 ~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i~ 221 (251)
.+.+++.++|+.|+++|++++++||++ +..+...|+.+|+..+++.++..++...||.+.......+.+.- ....+
T Consensus 106 ~~~~~~~~~L~~l~~~g~~~~i~T~~~---~~~~~~~l~~~gl~~~f~~~~~~~~~~~KP~p~~~~~~~~~~~~-~~~~~ 181 (197)
T TIGR01548 106 ETLLTPKGLLRELHRAPKGMAVVTGRP---RKDAAKFLTTHGLEILFPVQIWMEDCPPKPNPEPLILAAKALGV-EACHA 181 (197)
T ss_pred ccccCHHHHHHHHHHcCCcEEEECCCC---HHHHHHHHHHcCchhhCCEEEeecCCCCCcCHHHHHHHHHHhCc-CcccE
Confidence 455566999999999999999999998 77888899999998888877776664347766432222222211 12368
Q ss_pred EEEcCCccccccccc
Q 036571 222 GNIGDQWSDLLGTNA 236 (251)
Q Consensus 222 ~~VGDq~sDi~ga~~ 236 (251)
++|||+.+|+.+|+.
T Consensus 182 i~vGD~~~Di~aA~~ 196 (197)
T TIGR01548 182 AMVGDTVDDIITGRK 196 (197)
T ss_pred EEEeCCHHHHHHHHh
Confidence 999999999998853
No 29
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.51 E-value=1.2e-13 Score=131.38 Aligned_cols=97 Identities=11% Similarity=0.152 Sum_probs=76.4
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCCCC--CCccccchHHHHHHHHhcC
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSSYS--GETAVVYKSSERKRLEKKG 217 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~--~kp~~~~K~~~r~~L~~~g 217 (251)
..+++||+.++|++|+++|++++++||++ +..+.+.|+.+|+..+++.++..++.. +||. .+. ..+++.+
T Consensus 328 ~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~---~~~~~~~l~~~~l~~~f~~i~~~d~v~~~~kP~-~~~----~al~~l~ 399 (459)
T PRK06698 328 KGALYPNVKEIFTYIKENNCSIYIASNGL---TEYLRAIVSYYDLDQWVTETFSIEQINSLNKSD-LVK----SILNKYD 399 (459)
T ss_pred CCCcCCCHHHHHHHHHHCCCeEEEEeCCc---hHHHHHHHHHCCcHhhcceeEecCCCCCCCCcH-HHH----HHHHhcC
Confidence 46889999999999999999999999998 778888999999988888888776543 4443 222 2233344
Q ss_pred ccEEEEEcCCccccccc-cccCcEEEeC
Q 036571 218 YRIIGNIGDQWSDLLGT-NAGNRTFKLP 244 (251)
Q Consensus 218 ~~i~~~VGDq~sDi~ga-~~g~r~f~lP 244 (251)
.+.+++|||+.+|+.++ ++|.+++.++
T Consensus 400 ~~~~v~VGDs~~Di~aAk~AG~~~I~v~ 427 (459)
T PRK06698 400 IKEAAVVGDRLSDINAAKDNGLIAIGCN 427 (459)
T ss_pred cceEEEEeCCHHHHHHHHHCCCeEEEEe
Confidence 56799999999999998 4678877664
No 30
>PLN02940 riboflavin kinase
Probab=99.51 E-value=1.3e-13 Score=128.49 Aligned_cols=146 Identities=20% Similarity=0.259 Sum_probs=100.0
Q ss_pred CCCCcEEEEecCCCccCChhhHhhh------cCCCC---------------------------CCChHH----HHHHHhc
Q 036571 96 GDGREIWIFDIDETSLSNLPYYAKH------GFGVE---------------------------PFNSTL----FNEWVNK 138 (251)
Q Consensus 96 ~~~~~avvfDIDgTlldn~~~~~~~------~~~~~---------------------------~~~~~~----~~~wv~~ 138 (251)
.+..++||||+||||+|+.+.+... .+|.. +...+. +.+....
T Consensus 8 ~~~ik~VIFDlDGTLvDt~~~~~~a~~~~~~~~G~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (382)
T PLN02940 8 KKLVSHVILDLDGTLLNTDGIVSDVLKAFLVKYGKQWDGREAQKIVGKTPLEAAATVVEDYGLPCSTDEFNSEITPLLSE 87 (382)
T ss_pred cccCCEEEECCcCcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999997755331 12110 001111 1111111
Q ss_pred --CCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHH-hcCCCCcceEEEeCCC-CCCCccccchHHHHHHHH
Q 036571 139 --GEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLK-NVGFYTWENLILKGSS-YSGETAVVYKSSERKRLE 214 (251)
Q Consensus 139 --~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~-~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~L~ 214 (251)
....++||+.++|+.|+++|++++++||++ +..+...|. ..|+..+++.++.+++ ..+||.+..-....+.+.
T Consensus 88 ~~~~~~l~pGv~elL~~Lk~~g~~l~IvTn~~---~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lg 164 (382)
T PLN02940 88 QWCNIKALPGANRLIKHLKSHGVPMALASNSP---RANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAKRLN 164 (382)
T ss_pred HHccCCCCcCHHHHHHHHHHCCCcEEEEeCCc---HHHHHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHHHcC
Confidence 346789999999999999999999999998 556667776 6899888888887766 357776643222222221
Q ss_pred hcCccEEEEEcCCccccccc-cccCcEEEeCC
Q 036571 215 KKGYRIIGNIGDQWSDLLGT-NAGNRTFKLPD 245 (251)
Q Consensus 215 ~~g~~i~~~VGDq~sDi~ga-~~g~r~f~lPn 245 (251)
.....+++|||+.+|+.+| ++|.+++.++.
T Consensus 165 -v~p~~~l~VGDs~~Di~aA~~aGi~~I~v~~ 195 (382)
T PLN02940 165 -VEPSNCLVIEDSLPGVMAGKAAGMEVIAVPS 195 (382)
T ss_pred -CChhHEEEEeCCHHHHHHHHHcCCEEEEECC
Confidence 1234689999999999999 57888888865
No 31
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.50 E-value=1.6e-13 Score=122.98 Aligned_cols=133 Identities=17% Similarity=0.160 Sum_probs=98.7
Q ss_pred CCCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHH
Q 036571 96 GDGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVT 175 (251)
Q Consensus 96 ~~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T 175 (251)
..++++++||+||||.++... .+| +|......+++|++.++++.|+++|++++++|||++..+..+
T Consensus 155 ~~~~~~~~~D~dgtl~~~~~~--------~~~------~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~ 220 (300)
T PHA02530 155 PGLPKAVIFDIDGTLAKMGGR--------SPY------DWTKVKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDT 220 (300)
T ss_pred CCCCCEEEEECCCcCcCCCCC--------Ccc------chhhcccCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHH
Confidence 345689999999999997431 122 344556689999999999999999999999999999999999
Q ss_pred HHHHHhcCCCC-------cceEEEeCCCCCCCccccchHHHHHHHHhcCccEEEEEcCCccccccc-cccCcEEEe
Q 036571 176 ENNLKNVGFYT-------WENLILKGSSYSGETAVVYKSSERKRLEKKGYRIIGNIGDQWSDLLGT-NAGNRTFKL 243 (251)
Q Consensus 176 ~~~L~~~G~~~-------~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i~~~VGDq~sDi~ga-~~g~r~f~l 243 (251)
.++|...|+.. ...++||... .+||++..+....+++....++++++|||+..|+.++ .+|..++.+
T Consensus 221 l~~l~~~~~~f~~i~~~~~~~~~~~~~~-~~kp~p~~~~~~l~~~~~~~~~~~~~vgD~~~d~~~a~~~Gi~~i~v 295 (300)
T PHA02530 221 VEWLRQTDIWFDDLIGRPPDMHFQREQG-DKRPDDVVKEEIFWEKIAPKYDVLLAVDDRDQVVDMWRRIGLECWQV 295 (300)
T ss_pred HHHHHHcCCchhhhhCCcchhhhcccCC-CCCCcHHHHHHHHHHHhccCceEEEEEcCcHHHHHHHHHhCCeEEEe
Confidence 99998887321 0122344332 4677777655554444333568999999999999998 467777665
No 32
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.49 E-value=2.5e-13 Score=113.22 Aligned_cols=99 Identities=12% Similarity=0.069 Sum_probs=72.8
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCC-CCCCccccchHHHHHHHHhcCc
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSS-YSGETAVVYKSSERKRLEKKGY 218 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~L~~~g~ 218 (251)
..+++|+ .++|..|++. ++++++||.+ +......|+++|+..+++.++..++ ...||.+..-....+.+. ...
T Consensus 86 ~~~~~~~-~e~L~~L~~~-~~l~I~T~~~---~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~-~~~ 159 (188)
T PRK10725 86 SVEPLPL-IEVVKAWHGR-RPMAVGTGSE---SAIAEALLAHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLMG-VQP 159 (188)
T ss_pred cCCCccH-HHHHHHHHhC-CCEEEEcCCc---hHHHHHHHHhCCcHhHceEEEehhhccCCCCChHHHHHHHHHcC-CCH
Confidence 3567885 6999999876 8999999988 6677888999999988887777665 367777753222222222 113
Q ss_pred cEEEEEcCCccccccc-cccCcEEEeC
Q 036571 219 RIIGNIGDQWSDLLGT-NAGNRTFKLP 244 (251)
Q Consensus 219 ~i~~~VGDq~sDi~ga-~~g~r~f~lP 244 (251)
..+++|||+.+|+.+| .+|.+++.+.
T Consensus 160 ~~~l~igDs~~di~aA~~aG~~~i~~~ 186 (188)
T PRK10725 160 TQCVVFEDADFGIQAARAAGMDAVDVR 186 (188)
T ss_pred HHeEEEeccHhhHHHHHHCCCEEEeec
Confidence 4588999999999999 4688877664
No 33
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.49 E-value=1.2e-13 Score=111.87 Aligned_cols=128 Identities=16% Similarity=0.146 Sum_probs=87.4
Q ss_pred cEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccc--------
Q 036571 100 EIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQ-------- 171 (251)
Q Consensus 100 ~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~-------- 171 (251)
++++||+||||.++...+ | ...|.+ .+++||+.++++.|+++|++++++||.+...
T Consensus 1 ~~~~~d~dgtl~~~~~~~---------~-~~~~~~------~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~ 64 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSD---------Y-PRSLDD------WQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEA 64 (147)
T ss_pred CeEEEeCCCceeccCCcc---------c-CCCHHH------eEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHH
Confidence 479999999999975421 1 123443 3689999999999999999999999987311
Q ss_pred ----HHHHHHHHHhcCCCCcceEEEeC----CC-CCCCccccchHHHHHHHHhcCccEEEEEcCCccccccc-cccCcEE
Q 036571 172 ----RSVTENNLKNVGFYTWENLILKG----SS-YSGETAVVYKSSERKRLEKKGYRIIGNIGDQWSDLLGT-NAGNRTF 241 (251)
Q Consensus 172 ----r~~T~~~L~~~G~~~~~~lilr~----~~-~~~kp~~~~K~~~r~~L~~~g~~i~~~VGDq~sDi~ga-~~g~r~f 241 (251)
...+...|+.+|+.. +..+... +. ...||.+..-....+.+. .....+++|||+..|+.+| ++|.+++
T Consensus 65 ~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~~~~~KP~~~~~~~~~~~~~-~~~~e~i~IGDs~~Di~~A~~~Gi~~v 142 (147)
T TIGR01656 65 FRAPNGRVLELLRQLGVAV-DGVLFCPHHPADNCSCRKPKPGLILEALKRLG-VDASRSLVVGDRLRDLQAARNAGLAAV 142 (147)
T ss_pred HHHHHHHHHHHHHhCCCce-eEEEECCCCCCCCCCCCCCCHHHHHHHHHHcC-CChHHEEEEcCCHHHHHHHHHCCCCEE
Confidence 245667788899874 2223321 21 235665543222222222 2234599999999999999 6789998
Q ss_pred EeCC
Q 036571 242 KLPD 245 (251)
Q Consensus 242 ~lPn 245 (251)
.+|.
T Consensus 143 ~i~~ 146 (147)
T TIGR01656 143 LLVD 146 (147)
T ss_pred EecC
Confidence 8874
No 34
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.49 E-value=2.3e-13 Score=113.00 Aligned_cols=95 Identities=17% Similarity=0.147 Sum_probs=70.0
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCC-CCCCccccchHHHHHHHHhcCc
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSS-YSGETAVVYKSSERKRLEKKGY 218 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~L~~~g~ 218 (251)
...++||+.++|+.|+++|++++++||+ ......|+.+|+..+++.++..+. ...||.+..- ...+++.|.
T Consensus 86 ~~~~~~g~~~~l~~l~~~g~~i~i~S~~-----~~~~~~l~~~~l~~~f~~v~~~~~~~~~kp~~~~~---~~~~~~~~~ 157 (185)
T TIGR02009 86 GAEVLPGIENFLKRLKKKGIAVGLGSSS-----KNADRILAKLGLTDYFDAIVDADEVKEGKPHPETF---LLAAELLGV 157 (185)
T ss_pred CCCCCcCHHHHHHHHHHcCCeEEEEeCc-----hhHHHHHHHcChHHHCCEeeehhhCCCCCCChHHH---HHHHHHcCC
Confidence 4689999999999999999999999998 235677888999877777766554 3566655321 222233333
Q ss_pred --cEEEEEcCCcccccccc-ccCcEEE
Q 036571 219 --RIIGNIGDQWSDLLGTN-AGNRTFK 242 (251)
Q Consensus 219 --~i~~~VGDq~sDi~ga~-~g~r~f~ 242 (251)
..+++|||+..|+.+|. +|.+++.
T Consensus 158 ~~~~~v~IgD~~~di~aA~~~G~~~i~ 184 (185)
T TIGR02009 158 SPNECVVFEDALAGVQAARAAGMFAVA 184 (185)
T ss_pred CHHHeEEEeCcHhhHHHHHHCCCeEee
Confidence 45889999999999994 6776653
No 35
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.48 E-value=8.9e-13 Score=112.79 Aligned_cols=101 Identities=15% Similarity=0.207 Sum_probs=73.3
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCCC-CCCccccchHHHHHHHHhcCc
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSSY-SGETAVVYKSSERKRLEKKGY 218 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~~-~~kp~~~~K~~~r~~L~~~g~ 218 (251)
...++||+.++++.|+++|++++++||.. .......|+.+|+..++..++..+.. ..||.+.......+.+. ...
T Consensus 91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~---~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~-~~~ 166 (226)
T PRK13222 91 GSRLYPGVKETLAALKAAGYPLAVVTNKP---TPFVAPLLEALGIADYFSVVIGGDSLPNKKPDPAPLLLACEKLG-LDP 166 (226)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHHcCCccCccEEEcCCCCCCCCcChHHHHHHHHHcC-CCh
Confidence 46799999999999999999999999998 45666788889998777777766542 45654432112222221 123
Q ss_pred cEEEEEcCCccccccc-cccCcEEEeC
Q 036571 219 RIIGNIGDQWSDLLGT-NAGNRTFKLP 244 (251)
Q Consensus 219 ~i~~~VGDq~sDi~ga-~~g~r~f~lP 244 (251)
..+++|||+.+|+.++ .+|..++.++
T Consensus 167 ~~~i~igD~~~Di~~a~~~g~~~i~v~ 193 (226)
T PRK13222 167 EEMLFVGDSRNDIQAARAAGCPSVGVT 193 (226)
T ss_pred hheEEECCCHHHHHHHHHCCCcEEEEC
Confidence 4689999999999998 4566666654
No 36
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.47 E-value=7.1e-13 Score=118.93 Aligned_cols=101 Identities=15% Similarity=0.102 Sum_probs=68.9
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcC---CCCcceEEEeCCC-CCCCccccchHHHHHHHHhc
Q 036571 141 APSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVG---FYTWENLILKGSS-YSGETAVVYKSSERKRLEKK 216 (251)
Q Consensus 141 ~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G---~~~~~~lilr~~~-~~~kp~~~~K~~~r~~L~~~ 216 (251)
.+++||+.++|+.|+++|++++++||.+ +......|..++ +..++.++ .+++ ...||.+..-......+. .
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~---~~~~~~~l~~~~~~~~~~~~~~v-~~~~~~~~KP~p~~~~~a~~~~~-~ 217 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSN---EKAVSKIVNTLLGPERAQGLDVF-AGDDVPKKKPDPDIYNLAAETLG-V 217 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHHhccccccCceEEE-eccccCCCCCCHHHHHHHHHHhC-c
Confidence 4799999999999999999999999987 445555555543 22223444 4443 356777653222222221 1
Q ss_pred CccEEEEEcCCccccccc-cccCcEEEeCCC
Q 036571 217 GYRIIGNIGDQWSDLLGT-NAGNRTFKLPDP 246 (251)
Q Consensus 217 g~~i~~~VGDq~sDi~ga-~~g~r~f~lPnp 246 (251)
....+++|||+++|+.+| ++|.+++.+++.
T Consensus 218 ~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g 248 (286)
T PLN02779 218 DPSRCVVVEDSVIGLQAAKAAGMRCIVTKSS 248 (286)
T ss_pred ChHHEEEEeCCHHhHHHHHHcCCEEEEEccC
Confidence 124589999999999999 568888877653
No 37
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.46 E-value=2.5e-13 Score=107.55 Aligned_cols=123 Identities=20% Similarity=0.185 Sum_probs=82.7
Q ss_pred cEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccc-----HHH
Q 036571 100 EIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQ-----RSV 174 (251)
Q Consensus 100 ~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~-----r~~ 174 (251)
++++||+||||.++.++. ..|. ...++|++.++++.|+++|++++++||++... ++.
T Consensus 1 k~~~~D~dgtL~~~~~~~------------~~~~------~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~ 62 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVPYV------------DDED------ERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGR 62 (132)
T ss_pred CEEEEeCCCceecCCCCC------------CCHH------HheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHH
Confidence 589999999999753221 1122 25789999999999999999999999998433 445
Q ss_pred HHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCccEEEEEcC-Ccccccccc-ccCcEEEe
Q 036571 175 TENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRIIGNIGD-QWSDLLGTN-AGNRTFKL 243 (251)
Q Consensus 175 T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i~~~VGD-q~sDi~ga~-~g~r~f~l 243 (251)
+.+.|+.+|+.. +..+... ...||.+..-......+.......+++||| ...|+.+|. +|.+++-+
T Consensus 63 ~~~~l~~~~l~~-~~~~~~~--~~~KP~~~~~~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~~~Gi~~i~~ 130 (132)
T TIGR01662 63 VARRLEELGVPI-DVLYACP--HCRKPKPGMFLEALKRFNEIDPEESVYVGDQDLTDLQAAKRAGLAFILV 130 (132)
T ss_pred HHHHHHHCCCCE-EEEEECC--CCCCCChHHHHHHHHHcCCCChhheEEEcCCCcccHHHHHHCCCeEEEe
Confidence 677888899874 3333443 345665543222223321012356899999 689999994 56665543
No 38
>PRK09449 dUMP phosphatase; Provisional
Probab=99.46 E-value=6.3e-13 Score=114.05 Aligned_cols=97 Identities=25% Similarity=0.321 Sum_probs=73.5
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCC-CCCCccccchHHHHHHHHhcCc-
Q 036571 141 APSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSS-YSGETAVVYKSSERKRLEKKGY- 218 (251)
Q Consensus 141 ~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~L~~~g~- 218 (251)
.+++||+.++|+.|+ +|++++++||.+ +..+...|+.+|+..+++.++.+++ ...||.+..-.. .+++.|.
T Consensus 94 ~~~~~g~~~~L~~L~-~~~~~~i~Tn~~---~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~~~~---~~~~~~~~ 166 (224)
T PRK09449 94 CTPLPGAVELLNALR-GKVKMGIITNGF---TELQQVRLERTGLRDYFDLLVISEQVGVAKPDVAIFDY---ALEQMGNP 166 (224)
T ss_pred CccCccHHHHHHHHH-hCCeEEEEeCCc---HHHHHHHHHhCChHHHcCEEEEECccCCCCCCHHHHHH---HHHHcCCC
Confidence 579999999999999 689999999987 6677788999999877776666554 457776643222 2233332
Q ss_pred --cEEEEEcCCc-cccccc-cccCcEEEeC
Q 036571 219 --RIIGNIGDQW-SDLLGT-NAGNRTFKLP 244 (251)
Q Consensus 219 --~i~~~VGDq~-sDi~ga-~~g~r~f~lP 244 (251)
+.+++|||+. +|+.+| ++|.+++.+.
T Consensus 167 ~~~~~~~vgD~~~~Di~~A~~aG~~~i~~~ 196 (224)
T PRK09449 167 DRSRVLMVGDNLHSDILGGINAGIDTCWLN 196 (224)
T ss_pred CcccEEEEcCCcHHHHHHHHHCCCcEEEEC
Confidence 4689999998 799999 5688877664
No 39
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.44 E-value=6.1e-13 Score=110.99 Aligned_cols=96 Identities=13% Similarity=0.042 Sum_probs=70.1
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCCC-C----CCccccchHHHHHHHH
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSSY-S----GETAVVYKSSERKRLE 214 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~~-~----~kp~~~~K~~~r~~L~ 214 (251)
..+++||+.++|+.|+ .+++++||++ +..+...|+.+|+..+++.++..++. . .||.+..-....+.+.
T Consensus 82 ~~~~~~g~~~~L~~L~---~~~~i~Tn~~---~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~ 155 (184)
T TIGR01993 82 KLKPDPELRNLLLRLP---GRKIIFTNGD---RAHARRALNRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKALREAG 155 (184)
T ss_pred hCCCCHHHHHHHHhCC---CCEEEEeCCC---HHHHHHHHHHcCcHhhhCeEEEeecccCccCCCCCCHHHHHHHHHHhC
Confidence 3568999999999997 5799999998 66788889999998877766665543 2 4776643333333332
Q ss_pred hcCccEEEEEcCCccccccc-cccCcEEE
Q 036571 215 KKGYRIIGNIGDQWSDLLGT-NAGNRTFK 242 (251)
Q Consensus 215 ~~g~~i~~~VGDq~sDi~ga-~~g~r~f~ 242 (251)
.....+++|||+..|+.+| .+|.+++.
T Consensus 156 -~~~~~~l~vgD~~~di~aA~~~G~~~i~ 183 (184)
T TIGR01993 156 -VDPERAIFFDDSARNIAAAKALGMKTVL 183 (184)
T ss_pred -CCccceEEEeCCHHHHHHHHHcCCEEee
Confidence 2234589999999999998 46777653
No 40
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.42 E-value=5.6e-13 Score=103.21 Aligned_cols=120 Identities=21% Similarity=0.204 Sum_probs=85.0
Q ss_pred EEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHH
Q 036571 101 IWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLK 180 (251)
Q Consensus 101 avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~ 180 (251)
++|||+||||....++... .....+.|++.++++.|+++|++++++||+. +.....+++
T Consensus 1 ~~vfD~D~tl~~~~~~~~~------------------~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~---~~~~~~~~~ 59 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAE------------------IEELELYPGVKEALKELKEKGIKLALATNKS---RREVLELLE 59 (139)
T ss_pred CeEEccCCceEccCccccc------------------cccCCcCcCHHHHHHHHHHCCCeEEEEeCch---HHHHHHHHH
Confidence 4799999999987553321 2246899999999999999999999999999 788889999
Q ss_pred hcCCCCcceEEEeCCCC-CC----------------CccccchHHHHHHHHhcCccEEEEEcCCccccccccc-cCcEEE
Q 036571 181 NVGFYTWENLILKGSSY-SG----------------ETAVVYKSSERKRLEKKGYRIIGNIGDQWSDLLGTNA-GNRTFK 242 (251)
Q Consensus 181 ~~G~~~~~~lilr~~~~-~~----------------kp~~~~K~~~r~~L~~~g~~i~~~VGDq~sDi~ga~~-g~r~f~ 242 (251)
..|+...+..++..... .. ||.+.........+. ..+..+++|||+.+|+..+.. |.+++.
T Consensus 60 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~igD~~~d~~~~~~~g~~~i~ 138 (139)
T cd01427 60 ELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDKLLAALKLLG-VDPEEVLMVGDSLNDIEMAKAAGGLGVA 138 (139)
T ss_pred HcCCchhhhheeccchhhhhcccccccccccccccCCCCHHHHHHHHHHcC-CChhhEEEeCCCHHHHHHHHHcCCceee
Confidence 99985544444443321 11 443333323333332 225678999999999999865 777654
No 41
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.42 E-value=1e-12 Score=111.04 Aligned_cols=94 Identities=20% Similarity=0.307 Sum_probs=68.2
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCC-CCCCccccchHHHHHHHHhcCc-
Q 036571 141 APSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSS-YSGETAVVYKSSERKRLEKKGY- 218 (251)
Q Consensus 141 ~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~L~~~g~- 218 (251)
..++||+.++|++|+++|++++++||.+. . ....|+.+|+..+++.++...+ ..+||.+..-. ..+++.|.
T Consensus 104 ~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~---~-~~~~l~~~~l~~~fd~i~~s~~~~~~KP~~~~~~---~~~~~~~~~ 176 (203)
T TIGR02252 104 WQVYPDAIKLLKDLRERGLILGVISNFDS---R-LRGLLEALGLLEYFDFVVTSYEVGAEKPDPKIFQ---EALERAGIS 176 (203)
T ss_pred ceeCcCHHHHHHHHHHCCCEEEEEeCCch---h-HHHHHHHCCcHHhcceEEeecccCCCCCCHHHHH---HHHHHcCCC
Confidence 36899999999999999999999999763 2 3567888999877766665544 45677664322 22233343
Q ss_pred -cEEEEEcCCc-cccccc-cccCcEE
Q 036571 219 -RIIGNIGDQW-SDLLGT-NAGNRTF 241 (251)
Q Consensus 219 -~i~~~VGDq~-sDi~ga-~~g~r~f 241 (251)
..+++|||+. +|+.+| ++|.+++
T Consensus 177 ~~~~~~IgD~~~~Di~~A~~aG~~~i 202 (203)
T TIGR02252 177 PEEALHIGDSLRNDYQGARAAGWRAL 202 (203)
T ss_pred hhHEEEECCCchHHHHHHHHcCCeee
Confidence 4589999998 899998 4566653
No 42
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.41 E-value=6.2e-13 Score=107.53 Aligned_cols=129 Identities=20% Similarity=0.253 Sum_probs=81.0
Q ss_pred EEEEecCCCccCChhhHhhh------cCCC----------CCCC-----hHHHHHHHhc-CCCCCchHHHHHHHHHHHCC
Q 036571 101 IWIFDIDETSLSNLPYYAKH------GFGV----------EPFN-----STLFNEWVNK-GEAPSLPESLKLYKKLLSLG 158 (251)
Q Consensus 101 avvfDIDgTlldn~~~~~~~------~~~~----------~~~~-----~~~~~~wv~~-~~~~~~pga~ell~~L~~~G 158 (251)
+|+||+||||+|+.+.+... .++. .... ...|++.... .....+||+.++++.|+++|
T Consensus 1 ~iifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~e~l~~L~~~g 80 (154)
T TIGR01549 1 AILFDIDGTLVDSSFAIRRAFEETLEEFGEDFQALKALRGLAEELLYRIATSFEELLGYDAEEAYIRGAADLLKRLKEAG 80 (154)
T ss_pred CeEecCCCcccccHHHHHHHHHHHHHHhcccHHHHHHHHccChHHHHHHHHHHHHHhCcchhheeccCHHHHHHHHHHCc
Confidence 48999999999997643221 1110 0100 1233333221 23567899999999999999
Q ss_pred CeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCccEEEEEcCCcccccccc
Q 036571 159 IKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRIIGNIGDQWSDLLGTN 235 (251)
Q Consensus 159 ~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i~~~VGDq~sDi~ga~ 235 (251)
++++++||+. +......++.+ +..++..++..++..+||.+..-.....++.-. . .+++|||+..|+.+|.
T Consensus 81 ~~~~i~T~~~---~~~~~~~~~~~-l~~~f~~i~~~~~~~~Kp~~~~~~~~~~~~~~~-~-~~l~iGDs~~Di~aa~ 151 (154)
T TIGR01549 81 IKLGIISNGS---LRAQKLLLRKH-LGDYFDLILGSDEFGAKPEPEIFLAALESLGLP-P-EVLHVGDNLNDIEGAR 151 (154)
T ss_pred CeEEEEeCCc---hHHHHHHHHHH-HHhcCcEEEecCCCCCCcCHHHHHHHHHHcCCC-C-CEEEEeCCHHHHHHHH
Confidence 9999999998 44555556554 444555555544434777664322222222211 2 5899999999999885
No 43
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.40 E-value=2e-12 Score=106.67 Aligned_cols=97 Identities=19% Similarity=0.159 Sum_probs=69.1
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCC-CCCCccccchHHHHHHHHhcCcc
Q 036571 141 APSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSS-YSGETAVVYKSSERKRLEKKGYR 219 (251)
Q Consensus 141 ~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~L~~~g~~ 219 (251)
.+++||+.++++.|+++|++++++||.+.. . ...+.++|+..+++.++.+++ ..+||.+.......+.+. ....
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~---~-~~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~-~~~~ 158 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRD---H-AVLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLG-LKPE 158 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchH---H-HHHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcC-CCcc
Confidence 688999999999999999999999999843 3 334445898777776665544 467776643222222222 1245
Q ss_pred EEEEEcCCccccccc-cccCcEEE
Q 036571 220 IIGNIGDQWSDLLGT-NAGNRTFK 242 (251)
Q Consensus 220 i~~~VGDq~sDi~ga-~~g~r~f~ 242 (251)
.+++|||+..|+.+| .+|.+++.
T Consensus 159 ~~~~vgD~~~di~aA~~~G~~~i~ 182 (183)
T TIGR01509 159 ECLFVDDSPAGIEAAKAAGMHTVL 182 (183)
T ss_pred eEEEEcCCHHHHHHHHHcCCEEEe
Confidence 689999999999998 46776653
No 44
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.40 E-value=1.5e-12 Score=110.17 Aligned_cols=102 Identities=12% Similarity=0.015 Sum_probs=71.5
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHh-cCCCCcceEEEeCCC-CCCCccccchHHHHHHHHhcCc
Q 036571 141 APSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKN-VGFYTWENLILKGSS-YSGETAVVYKSSERKRLEKKGY 218 (251)
Q Consensus 141 ~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~-~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~L~~~g~ 218 (251)
.+++||+.++++.|+++|++++++||.+. ......+.. .|+..+++.++.+.+ ..+||.+.......+.+. ...
T Consensus 83 ~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~---~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~~-~~p 158 (199)
T PRK09456 83 VALRPEVIAIMHKLREQGHRVVVLSNTNR---LHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAEG-FSA 158 (199)
T ss_pred hccCHHHHHHHHHHHhCCCcEEEEcCCch---hhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHcC-CCh
Confidence 46899999999999999999999999983 333344443 356555555555444 567887753322222221 123
Q ss_pred cEEEEEcCCccccccc-cccCcEEEeCCC
Q 036571 219 RIIGNIGDQWSDLLGT-NAGNRTFKLPDP 246 (251)
Q Consensus 219 ~i~~~VGDq~sDi~ga-~~g~r~f~lPnp 246 (251)
..+++|||+..|+.+| .+|.+++.++++
T Consensus 159 ~~~l~vgD~~~di~aA~~aG~~~i~~~~~ 187 (199)
T PRK09456 159 ADAVFFDDNADNIEAANALGITSILVTDK 187 (199)
T ss_pred hHeEEeCCCHHHHHHHHHcCCEEEEecCC
Confidence 4689999999999998 578898888775
No 45
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.39 E-value=4.8e-13 Score=108.43 Aligned_cols=100 Identities=21% Similarity=0.220 Sum_probs=74.8
Q ss_pred CCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCC-CCCCCccccchHHHHHHHHhcC
Q 036571 139 GEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGS-SYSGETAVVYKSSERKRLEKKG 217 (251)
Q Consensus 139 ~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~-~~~~kp~~~~K~~~r~~L~~~g 217 (251)
...++.|++.++|+.|+++|++++++||.+ +......|+++|+..+++.++..+ ....||.+..-....+++. ..
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~---~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~-~~ 149 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGS---RERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLG-IP 149 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSE---HHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHT-SS
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCC---cccccccccccccccccccccccchhhhhhhHHHHHHHHHHHcC-CC
Confidence 567899999999999999999999999998 677788899999987665555544 3456776643323333331 12
Q ss_pred ccEEEEEcCCccccccc-cccCcEEE
Q 036571 218 YRIIGNIGDQWSDLLGT-NAGNRTFK 242 (251)
Q Consensus 218 ~~i~~~VGDq~sDi~ga-~~g~r~f~ 242 (251)
...+++|||+..|+.+| .+|.+++-
T Consensus 150 p~~~~~vgD~~~d~~~A~~~G~~~i~ 175 (176)
T PF13419_consen 150 PEEILFVGDSPSDVEAAKEAGIKTIW 175 (176)
T ss_dssp GGGEEEEESSHHHHHHHHHTTSEEEE
T ss_pred cceEEEEeCCHHHHHHHHHcCCeEEe
Confidence 34689999999999999 46777653
No 46
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.37 E-value=3.1e-12 Score=109.63 Aligned_cols=97 Identities=11% Similarity=0.153 Sum_probs=70.9
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcc-eEEEeCCC-CCCCccccchHHHHHHHHhcC
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWE-NLILKGSS-YSGETAVVYKSSERKRLEKKG 217 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~-~lilr~~~-~~~kp~~~~K~~~r~~L~~~g 217 (251)
..+++||+.++|+.| +++++++||.+ +..+...|+.+|+..++ ..++.+.+ ...||.+..-....+.+. ..
T Consensus 86 ~~~~~~gv~~~L~~L---~~~~~ivTn~~---~~~~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~-~~ 158 (221)
T PRK10563 86 ELEPIAGANALLESI---TVPMCVVSNGP---VSKMQHSLGKTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAEAMN-VN 158 (221)
T ss_pred cCCcCCCHHHHHHHc---CCCEEEEeCCc---HHHHHHHHHhcChHHhCcceEeeHHhcCCCCCChHHHHHHHHHcC-CC
Confidence 468899999999998 49999999987 66788889999998877 46666543 467777654322222221 11
Q ss_pred ccEEEEEcCCccccccc-cccCcEEEe
Q 036571 218 YRIIGNIGDQWSDLLGT-NAGNRTFKL 243 (251)
Q Consensus 218 ~~i~~~VGDq~sDi~ga-~~g~r~f~l 243 (251)
...+++|||+++|+.+| .+|..++.+
T Consensus 159 p~~~l~igDs~~di~aA~~aG~~~i~~ 185 (221)
T PRK10563 159 VENCILVDDSSAGAQSGIAAGMEVFYF 185 (221)
T ss_pred HHHeEEEeCcHhhHHHHHHCCCEEEEE
Confidence 23589999999999998 467777655
No 47
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.37 E-value=2.5e-12 Score=109.49 Aligned_cols=105 Identities=17% Similarity=0.085 Sum_probs=70.2
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCC-CCCCccccchHHHHHHHHhcCc
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSS-YSGETAVVYKSSERKRLEKKGY 218 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~L~~~g~ 218 (251)
..+++||+.++|+.|+++|++++++||....... ....+...|+..+++.++.+.. ...||.+........++. ...
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~-~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~g-~~~ 169 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHS-AEEALLPGDIMALFDAVVESCLEGLRKPDPRIYQLMLERLG-VAP 169 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCCCccch-hhhHhhhhhhHhhCCEEEEeeecCCCCCCHHHHHHHHHHcC-CCH
Confidence 3568999999999999999999999998643221 2334445566555655554443 356777643222222221 113
Q ss_pred cEEEEEcCCccccccc-cccCcEEEeCCC
Q 036571 219 RIIGNIGDQWSDLLGT-NAGNRTFKLPDP 246 (251)
Q Consensus 219 ~i~~~VGDq~sDi~ga-~~g~r~f~lPnp 246 (251)
..+++|||...|+.+| .+|.+++.+.++
T Consensus 170 ~~~l~i~D~~~di~aA~~aG~~~i~v~~~ 198 (211)
T TIGR02247 170 EECVFLDDLGSNLKPAAALGITTIKVSDE 198 (211)
T ss_pred HHeEEEcCCHHHHHHHHHcCCEEEEECCH
Confidence 4588899999999999 568888877653
No 48
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.37 E-value=2.8e-12 Score=106.38 Aligned_cols=126 Identities=17% Similarity=0.120 Sum_probs=79.9
Q ss_pred CcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccH------
Q 036571 99 REIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQR------ 172 (251)
Q Consensus 99 ~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r------ 172 (251)
.+.++||+||||+.+.... .+ ..+++.| ..++||+.++|+.|+++|++++++||++...+
T Consensus 13 ~k~~~~D~Dgtl~~~~~~~---~~---~~~~~~~--------~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~ 78 (166)
T TIGR01664 13 SKVAAFDLDGTLITTRSGK---VF---PTSASDW--------RFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAE 78 (166)
T ss_pred CcEEEEeCCCceEecCCCC---cc---cCChHHe--------EEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHH
Confidence 4789999999999753100 00 1123333 23689999999999999999999999875321
Q ss_pred ---HHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHH-hcCccEEEEEcCCc--------ccccccc-ccCc
Q 036571 173 ---SVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLE-KKGYRIIGNIGDQW--------SDLLGTN-AGNR 239 (251)
Q Consensus 173 ---~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~-~~g~~i~~~VGDq~--------sDi~ga~-~g~r 239 (251)
..+...|+.+|++. +.++.......+||.+..-......+. ....+.+++|||+. +|+++|. +|.+
T Consensus 79 ~~~~~i~~~l~~~gl~~-~~ii~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~ 157 (166)
T TIGR01664 79 SFKNKIEAFLEKLKVPI-QVLAATHAGLYRKPMTGMWEYLQSQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLE 157 (166)
T ss_pred HHHHHHHHHHHHcCCCE-EEEEecCCCCCCCCccHHHHHHHHHcCCCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCC
Confidence 24567889999964 333333333356765532112222221 01235689999996 6999994 4544
No 49
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.35 E-value=7.9e-12 Score=106.65 Aligned_cols=96 Identities=21% Similarity=0.267 Sum_probs=71.9
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCC-CCCCccccchHHHHHHHHhc-C-
Q 036571 141 APSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSS-YSGETAVVYKSSERKRLEKK-G- 217 (251)
Q Consensus 141 ~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~L~~~-g- 217 (251)
..++||+.++|+.|+++ ++++++||.. ++.....|+++|+..+++.++...+ ...||.+..-... +++. |
T Consensus 96 ~~~~~g~~~~L~~l~~~-~~~~i~Sn~~---~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~~~~~~~---~~~~~~~ 168 (224)
T TIGR02254 96 HQLLPGAFELMENLQQK-FRLYIVTNGV---RETQYKRLRKSGLFPFFDDIFVSEDAGIQKPDKEIFNYA---LERMPKF 168 (224)
T ss_pred CeeCccHHHHHHHHHhc-CcEEEEeCCc---hHHHHHHHHHCCcHhhcCEEEEcCccCCCCCCHHHHHHH---HHHhcCC
Confidence 57899999999999999 9999999998 5566778899999887777776554 4567766432222 2222 3
Q ss_pred -ccEEEEEcCCc-cccccc-cccCcEEEe
Q 036571 218 -YRIIGNIGDQW-SDLLGT-NAGNRTFKL 243 (251)
Q Consensus 218 -~~i~~~VGDq~-sDi~ga-~~g~r~f~l 243 (251)
...+++|||+. +|+.+| .+|..++.+
T Consensus 169 ~~~~~v~igD~~~~di~~A~~~G~~~i~~ 197 (224)
T TIGR02254 169 SKEEVLMIGDSLTADIKGGQNAGLDTCWM 197 (224)
T ss_pred CchheEEECCCcHHHHHHHHHCCCcEEEE
Confidence 34589999998 899998 457766554
No 50
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.34 E-value=3.2e-12 Score=105.59 Aligned_cols=126 Identities=17% Similarity=0.182 Sum_probs=84.0
Q ss_pred cEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcc---------
Q 036571 100 EIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPED--------- 170 (251)
Q Consensus 100 ~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~--------- 170 (251)
++++||.||||..+.+. .|... . ....+++||+.++|++|+++|++++++||.+..
T Consensus 2 ~~~~~d~dg~l~~~~~~---------~~~~~-~-----~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~ 66 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPS---------DFQVD-A-----LEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQAD 66 (161)
T ss_pred CEEEEeCCCCccccCCC---------ccccC-C-----HHHeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHH
Confidence 68999999999985321 01100 0 012578999999999999999999999997421
Q ss_pred ---cHHHHHHHHHhcCCCCcceEEEe----CCC-CCCCccccchHHHHHHHHhcC--ccEEEEEcCCccccccc-cccCc
Q 036571 171 ---QRSVTENNLKNVGFYTWENLILK----GSS-YSGETAVVYKSSERKRLEKKG--YRIIGNIGDQWSDLLGT-NAGNR 239 (251)
Q Consensus 171 ---~r~~T~~~L~~~G~~~~~~lilr----~~~-~~~kp~~~~K~~~r~~L~~~g--~~i~~~VGDq~sDi~ga-~~g~r 239 (251)
....+.+.|..+|+. ++.++++ .+. ...||.+..-... ++..| .+.+++|||+++|+.+| ++|..
T Consensus 67 ~~~~~~~~~~~l~~~gl~-fd~ii~~~~~~~~~~~~~KP~~~~~~~~---~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~ 142 (161)
T TIGR01261 67 FDGPHNLMLQIFRSQGII-FDDVLICPHFPDDNCDCRKPKIKLLEPY---LKKNLIDKARSYVIGDRETDMQLAENLGIR 142 (161)
T ss_pred HHHHHHHHHHHHHHCCCc-eeEEEECCCCCCCCCCCCCCCHHHHHHH---HHHcCCCHHHeEEEeCCHHHHHHHHHCCCe
Confidence 234566778999997 3456555 222 3556654321111 22223 34589999999999999 56777
Q ss_pred EEEeC
Q 036571 240 TFKLP 244 (251)
Q Consensus 240 ~f~lP 244 (251)
++.+.
T Consensus 143 ~i~~~ 147 (161)
T TIGR01261 143 GIQYD 147 (161)
T ss_pred EEEEC
Confidence 76554
No 51
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.34 E-value=1.3e-11 Score=104.12 Aligned_cols=136 Identities=16% Similarity=0.104 Sum_probs=81.0
Q ss_pred CcEEEEecCCCccCChh----hHhhhcCC---------CC---------CCChHH----HHHHHhc---CCCCCchHHHH
Q 036571 99 REIWIFDIDETSLSNLP----YYAKHGFG---------VE---------PFNSTL----FNEWVNK---GEAPSLPESLK 149 (251)
Q Consensus 99 ~~avvfDIDgTlldn~~----~~~~~~~~---------~~---------~~~~~~----~~~wv~~---~~~~~~pga~e 149 (251)
+++||||+||||+|... ...+.++. .. ..+.+. +..+... ...+++||+.+
T Consensus 2 ~k~viFDlDGTLiD~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~e 81 (197)
T PHA02597 2 KPTILTDVDGVLLSWQSGLPYFAQKYNIPTDHILKMIQDERFRDPGELFGCDQELAKKLIEKYNNSDFIRYLSAYDDALD 81 (197)
T ss_pred CcEEEEecCCceEchhhccHHHHHhcCCCHHHHHHHHhHhhhcCHHHHhcccHHHHHHHhhhhhHHHHHHhccCCCCHHH
Confidence 47999999999999655 22222221 00 012111 2223211 34679999999
Q ss_pred HHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCC----cceEEEeCCCCCCCccccchHHHHHHHHhcCccEEEEEc
Q 036571 150 LYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYT----WENLILKGSSYSGETAVVYKSSERKRLEKKGYRIIGNIG 225 (251)
Q Consensus 150 ll~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~----~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i~~~VG 225 (251)
+|+.|++++ +++++||.+..... ..++.+|+.. +++.++.....++||. .....+++.|.+.+++||
T Consensus 82 ~L~~L~~~~-~~~i~Tn~~~~~~~---~~~~~~~l~~~f~~~f~~i~~~~~~~~kp~-----~~~~a~~~~~~~~~v~vg 152 (197)
T PHA02597 82 VINKLKEDY-DFVAVTALGDSIDA---LLNRQFNLNALFPGAFSEVLMCGHDESKEK-----LFIKAKEKYGDRVVCFVD 152 (197)
T ss_pred HHHHHHhcC-CEEEEeCCccchhH---HHHhhCCHHHhCCCcccEEEEeccCcccHH-----HHHHHHHHhCCCcEEEeC
Confidence 999999975 67888987744322 2333444432 3344444444444432 222233344456789999
Q ss_pred CCccccccc-cc--cCcEEEe
Q 036571 226 DQWSDLLGT-NA--GNRTFKL 243 (251)
Q Consensus 226 Dq~sDi~ga-~~--g~r~f~l 243 (251)
|+.+|+.+| ++ |..++-+
T Consensus 153 Ds~~di~aA~~a~~Gi~~i~~ 173 (197)
T PHA02597 153 DLAHNLDAAHEALSQLPVIHM 173 (197)
T ss_pred CCHHHHHHHHHHHcCCcEEEe
Confidence 999999999 45 8887765
No 52
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.33 E-value=5.5e-12 Score=105.38 Aligned_cols=127 Identities=17% Similarity=0.116 Sum_probs=83.3
Q ss_pred CcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcc-----c--
Q 036571 99 REIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPED-----Q-- 171 (251)
Q Consensus 99 ~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~-----~-- 171 (251)
.|+++||.||||..+...+. +.+. ...++||+.++|++|+++|++++++||++.. .
T Consensus 3 ~~~~~~d~~~t~~~~~~~~~-----------~~~~------~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~ 65 (181)
T PRK08942 3 MKAIFLDRDGVINVDSDGYV-----------KSPD------EWIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEA 65 (181)
T ss_pred ccEEEEECCCCcccCCcccc-----------CCHH------HeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHH
Confidence 57999999999977642221 1122 2468999999999999999999999998731 1
Q ss_pred -----HHHHHHHHHhcCCCCcceEEEeCC----C-CCCCccccchHHHHHHHHhcCccEEEEEcCCccccccc-cccCcE
Q 036571 172 -----RSVTENNLKNVGFYTWENLILKGS----S-YSGETAVVYKSSERKRLEKKGYRIIGNIGDQWSDLLGT-NAGNRT 240 (251)
Q Consensus 172 -----r~~T~~~L~~~G~~~~~~lilr~~----~-~~~kp~~~~K~~~r~~L~~~g~~i~~~VGDq~sDi~ga-~~g~r~ 240 (251)
.+.....|+++|+. ++.++.... . ...||.+.......+.+. .....+++|||+.+|+.+| .+|.++
T Consensus 66 ~~~~~~~~~~~~l~~~g~~-f~~i~~~~~~~~~~~~~~KP~p~~~~~~~~~l~-~~~~~~~~VgDs~~Di~~A~~aG~~~ 143 (181)
T PRK08942 66 QLNALHEKMDWSLADRGGR-LDGIYYCPHHPEDGCDCRKPKPGMLLSIAERLN-IDLAGSPMVGDSLRDLQAAAAAGVTP 143 (181)
T ss_pred HHHHHHHHHHHHHHHcCCc-cceEEECCCCCCCCCcCCCCCHHHHHHHHHHcC-CChhhEEEEeCCHHHHHHHHHCCCeE
Confidence 13334557777874 244444321 1 256776643222222221 1235689999999999999 467776
Q ss_pred EEeC
Q 036571 241 FKLP 244 (251)
Q Consensus 241 f~lP 244 (251)
+.++
T Consensus 144 i~v~ 147 (181)
T PRK08942 144 VLVR 147 (181)
T ss_pred EEEc
Confidence 6554
No 53
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.33 E-value=1.4e-11 Score=100.90 Aligned_cols=109 Identities=27% Similarity=0.408 Sum_probs=84.7
Q ss_pred CCCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHH
Q 036571 96 GDGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVT 175 (251)
Q Consensus 96 ~~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T 175 (251)
..|.+++|+|+|+||+. |+ ...+-|.+.+.+..++++|++++++||+++ ...
T Consensus 25 ~~Gikgvi~DlDNTLv~-------------------wd------~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e---~RV 76 (175)
T COG2179 25 AHGIKGVILDLDNTLVP-------------------WD------NPDATPELRAWLAELKEAGIKVVVVSNNKE---SRV 76 (175)
T ss_pred HcCCcEEEEeccCceec-------------------cc------CCCCCHHHHHHHHHHHhcCCEEEEEeCCCH---HHH
Confidence 46789999999999996 11 356789999999999999999999999884 455
Q ss_pred HHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCcc--EEEEEcCCc-ccccccc-ccCcEEEe
Q 036571 176 ENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYR--IIGNIGDQW-SDLLGTN-AGNRTFKL 243 (251)
Q Consensus 176 ~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~--i~~~VGDq~-sDi~ga~-~g~r~f~l 243 (251)
..++.++|++. +.+. .|| +-.+.|+.|.+.++. .+++||||. +|+.|++ +|.|++.+
T Consensus 77 ~~~~~~l~v~f----i~~A----~KP---~~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~~tIlV 137 (175)
T COG2179 77 ARAAEKLGVPF----IYRA----KKP---FGRAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGMRTILV 137 (175)
T ss_pred HhhhhhcCCce----eecc----cCc---cHHHHHHHHHHcCCChhHEEEEcchhhhhhhcccccCcEEEEE
Confidence 67788889875 3332 233 345677777766654 599999999 9999996 58887754
No 54
>PLN02954 phosphoserine phosphatase
Probab=99.33 E-value=2.4e-11 Score=104.23 Aligned_cols=139 Identities=22% Similarity=0.248 Sum_probs=85.9
Q ss_pred CCcEEEEecCCCccCChhhHhhh-cCCC---------------CCC-------------ChHHHHHHHhcCCCCCchHHH
Q 036571 98 GREIWIFDIDETSLSNLPYYAKH-GFGV---------------EPF-------------NSTLFNEWVNKGEAPSLPESL 148 (251)
Q Consensus 98 ~~~avvfDIDgTlldn~~~~~~~-~~~~---------------~~~-------------~~~~~~~wv~~~~~~~~pga~ 148 (251)
.+++||||+||||+++..+..-. .+|. .++ ..+.+.+++......++||+.
T Consensus 11 ~~k~viFDfDGTL~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pg~~ 90 (224)
T PLN02954 11 SADAVCFDVDSTVCVDEGIDELAEFCGAGEAVAEWTAKAMGGSVPFEEALAARLSLFKPSLSQVEEFLEKRPPRLSPGIP 90 (224)
T ss_pred cCCEEEEeCCCcccchHHHHHHHHHcCChHHHHHHHHHHHCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHccCCCCccHH
Confidence 47899999999999975432111 1211 111 012233444433456899999
Q ss_pred HHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCC--cc-e-EEEeCCC------C-CCCccccchHH-HHHHHHhc
Q 036571 149 KLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYT--WE-N-LILKGSS------Y-SGETAVVYKSS-ERKRLEKK 216 (251)
Q Consensus 149 ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~--~~-~-lilr~~~------~-~~kp~~~~K~~-~r~~L~~~ 216 (251)
++++.|+++|++++++|+.. +..+...|+.+|++. ++ . +.+..++ . ...+....|.. .+..+...
T Consensus 91 e~l~~l~~~g~~~~IvS~~~---~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~~~~~~~ 167 (224)
T PLN02954 91 ELVKKLRARGTDVYLVSGGF---RQMIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQHIKKKH 167 (224)
T ss_pred HHHHHHHHCCCEEEEECCCc---HHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHHHHHHHc
Confidence 99999999999999999998 667778888899963 22 1 1121110 0 00000112332 33333344
Q ss_pred CccEEEEEcCCccccccccccCc
Q 036571 217 GYRIIGNIGDQWSDLLGTNAGNR 239 (251)
Q Consensus 217 g~~i~~~VGDq~sDi~ga~~g~r 239 (251)
|+..+++|||+.+|+.++..|..
T Consensus 168 ~~~~~i~iGDs~~Di~aa~~~~~ 190 (224)
T PLN02954 168 GYKTMVMIGDGATDLEARKPGGA 190 (224)
T ss_pred CCCceEEEeCCHHHHHhhhcCCC
Confidence 66678999999999999866433
No 55
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.32 E-value=5e-12 Score=105.33 Aligned_cols=118 Identities=12% Similarity=0.083 Sum_probs=79.0
Q ss_pred cEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcc-----c---
Q 036571 100 EIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPED-----Q--- 171 (251)
Q Consensus 100 ~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~-----~--- 171 (251)
++++||.||||+...+|. ..++ ...++||+.++|++|+++|++++++||.+.. .
T Consensus 2 ~~~~~D~Dgtl~~~~~~~------------~~~~------~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~ 63 (176)
T TIGR00213 2 KAIFLDRDGTINIDHGYV------------HEID------NFEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQ 63 (176)
T ss_pred CEEEEeCCCCEeCCCCCC------------CCHH------HeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHH
Confidence 689999999999643321 1122 3568999999999999999999999999841 1
Q ss_pred ----HHHHHHHHHhcCCCCcceEEEeC-----------CCCCCCcccc-chHHHHHHHHhcC--ccEEEEEcCCcccccc
Q 036571 172 ----RSVTENNLKNVGFYTWENLILKG-----------SSYSGETAVV-YKSSERKRLEKKG--YRIIGNIGDQWSDLLG 233 (251)
Q Consensus 172 ----r~~T~~~L~~~G~~~~~~lilr~-----------~~~~~kp~~~-~K~~~r~~L~~~g--~~i~~~VGDq~sDi~g 233 (251)
+......|...|+.. +.++... ....+||.+. |... +++.| ...+++|||+++|+.+
T Consensus 64 ~~~~~~~~~~~l~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~KP~p~~~~~a----~~~~~~~~~~~v~VGDs~~Di~a 138 (176)
T TIGR00213 64 FEQLTEWMDWSLAERDVDL-DGIYYCPHHPEGVEEFRQVCDCRKPKPGMLLQA----RKELHIDMAQSYMVGDKLEDMQA 138 (176)
T ss_pred HHHHHHHHHHHHHHcCCCc-cEEEECCCCCcccccccCCCCCCCCCHHHHHHH----HHHcCcChhhEEEEcCCHHHHHH
Confidence 233345566777762 4444432 1124677663 3322 22233 3468899999999999
Q ss_pred c-cccCcE
Q 036571 234 T-NAGNRT 240 (251)
Q Consensus 234 a-~~g~r~ 240 (251)
| .+|.++
T Consensus 139 A~~aG~~~ 146 (176)
T TIGR00213 139 GVAAKVKT 146 (176)
T ss_pred HHHCCCcE
Confidence 9 567776
No 56
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.32 E-value=1.6e-11 Score=103.07 Aligned_cols=105 Identities=13% Similarity=0.033 Sum_probs=68.6
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcc-eEEEeCCCCCCCccc------cchHHHHHH
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWE-NLILKGSSYSGETAV------VYKSSERKR 212 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~-~lilr~~~~~~kp~~------~~K~~~r~~ 212 (251)
..+++||+.++++.|+++|++++++||+. +..+...++.+|+..++ ..+...+....+|.+ .-|......
T Consensus 78 ~~~~~~g~~e~l~~l~~~g~~~~IvS~~~---~~~~~~~l~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~ 154 (201)
T TIGR01491 78 EISLRDYAEELVRWLKEKGLKTAIVSGGI---MCLAKKVAEKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVER 154 (201)
T ss_pred hCCCCccHHHHHHHHHHCCCEEEEEeCCc---HHHHHHHHHHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHHHH
Confidence 46789999999999999999999999998 66777788888987643 223332221112221 112222222
Q ss_pred -HHhcC--ccEEEEEcCCccccccccccCcEEEe-CCCC
Q 036571 213 -LEKKG--YRIIGNIGDQWSDLLGTNAGNRTFKL-PDPM 247 (251)
Q Consensus 213 -L~~~g--~~i~~~VGDq~sDi~ga~~g~r~f~l-Pnp~ 247 (251)
+++.| ...+++|||+.+|+..+......|.+ |+|.
T Consensus 155 ~~~~~~~~~~~~i~iGDs~~D~~~a~~ag~~~a~~~~~~ 193 (201)
T TIGR01491 155 LKRELNPSLTETVAVGDSKNDLPMFEVADISISLGDEGH 193 (201)
T ss_pred HHHHhCCCHHHEEEEcCCHhHHHHHHhcCCeEEECCCcc
Confidence 23333 34589999999999998544444544 7663
No 57
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=99.31 E-value=1.4e-11 Score=97.66 Aligned_cols=76 Identities=12% Similarity=0.159 Sum_probs=63.2
Q ss_pred CcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHH-----
Q 036571 99 REIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRS----- 173 (251)
Q Consensus 99 ~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~----- 173 (251)
+++|+|||||||+.+.. .+|. ...+.+++++.++.|+++|+.|+++|||+...+.
T Consensus 1 ~K~i~~DiDGTL~~~~~---------~~y~-----------~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~ 60 (126)
T TIGR01689 1 MKRLVMDLDNTITLTEN---------GDYA-----------NVAPILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGK 60 (126)
T ss_pred CCEEEEeCCCCcccCCC---------Cccc-----------ccccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccc
Confidence 46899999999987421 0111 2568999999999999999999999999987766
Q ss_pred -------HHHHHHHhcCCCCcceEEEeCC
Q 036571 174 -------VTENNLKNVGFYTWENLILKGS 195 (251)
Q Consensus 174 -------~T~~~L~~~G~~~~~~lilr~~ 195 (251)
.|.+||.++|++. ++++|+..
T Consensus 61 i~~~~~~~t~~wL~k~~ipY-d~l~~~kp 88 (126)
T TIGR01689 61 INIHTLPIIILWLNQHNVPY-DEIYVGKP 88 (126)
T ss_pred cchhhHHHHHHHHHHcCCCC-ceEEeCCC
Confidence 9999999999996 89999874
No 58
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=99.31 E-value=2.3e-11 Score=100.01 Aligned_cols=127 Identities=24% Similarity=0.358 Sum_probs=86.6
Q ss_pred EEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHH
Q 036571 101 IWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLK 180 (251)
Q Consensus 101 avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~ 180 (251)
.|+|||||||+++... |. ..+ ..++....|++.+++++++++|++++++|||+..+...|.++|.
T Consensus 1 iVisDIDGTL~~sd~~------~~-~~~--------~~~~~~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~ 65 (157)
T smart00775 1 IVISDIDGTITKSDVL------GH-VVP--------IIGKDWTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLS 65 (157)
T ss_pred CEEEecCCCCcccccc------cc-ccc--------ccccCcCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHH
Confidence 3899999999987310 00 000 01224567999999999999999999999999988888899998
Q ss_pred h-----cCCCCcceEEEeCCCCC--------CCccccchHHHHHHHHh----cCccEEEEEcCCcccccccc-cc---Cc
Q 036571 181 N-----VGFYTWENLILKGSSYS--------GETAVVYKSSERKRLEK----KGYRIIGNIGDQWSDLLGTN-AG---NR 239 (251)
Q Consensus 181 ~-----~G~~~~~~lilr~~~~~--------~kp~~~~K~~~r~~L~~----~g~~i~~~VGDq~sDi~ga~-~g---~r 239 (251)
. ++++. ..+++++.... .+..-.+|....+.|.+ .+...++.+||..+|+..-. .| .|
T Consensus 66 ~~~~~~~~lp~-g~li~~~g~~~~~~~~e~i~~~~~~~K~~~l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~~~gi~~~~ 144 (157)
T smart00775 66 QIKQDGHNLPH-GPVLLSPDRLFAALHREVISKKPEVFKIACLRDIKSLFPPQGNPFYAGFGNRITDVISYSAVGIPPSR 144 (157)
T ss_pred HhhhccccCCC-ceEEEcCCcchhhhhcccccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCchhHHHHHHcCCChhh
Confidence 8 44664 46777665321 11111367666666664 35667788999999998752 22 45
Q ss_pred EEEe
Q 036571 240 TFKL 243 (251)
Q Consensus 240 ~f~l 243 (251)
+|.+
T Consensus 145 i~~i 148 (157)
T smart00775 145 IFTI 148 (157)
T ss_pred EEEE
Confidence 5654
No 59
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.30 E-value=2.3e-11 Score=126.10 Aligned_cols=100 Identities=18% Similarity=0.167 Sum_probs=76.3
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCC-CcceEEEeCCC-CCCCccccchHHHHHHHHhcCcc
Q 036571 142 PSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFY-TWENLILKGSS-YSGETAVVYKSSERKRLEKKGYR 219 (251)
Q Consensus 142 ~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~-~~~~lilr~~~-~~~kp~~~~K~~~r~~L~~~g~~ 219 (251)
.++||+.++|++|+++|++++++||.. +..+...|+++|+. .+++.++..++ ...||.+.......+.+. ....
T Consensus 161 ~~~pG~~elL~~Lk~~G~~l~IvSn~~---~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lg-v~p~ 236 (1057)
T PLN02919 161 IGFPGALELITQCKNKGLKVAVASSAD---RIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKILG-VPTS 236 (1057)
T ss_pred ccCccHHHHHHHHHhCCCeEEEEeCCc---HHHHHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHcC-cCcc
Confidence 479999999999999999999999998 66777889999996 56777777665 357887743222222332 1234
Q ss_pred EEEEEcCCccccccc-cccCcEEEeCC
Q 036571 220 IIGNIGDQWSDLLGT-NAGNRTFKLPD 245 (251)
Q Consensus 220 i~~~VGDq~sDi~ga-~~g~r~f~lPn 245 (251)
.+++|||+.+|+++| .+|++++.+..
T Consensus 237 e~v~IgDs~~Di~AA~~aGm~~I~v~~ 263 (1057)
T PLN02919 237 ECVVIEDALAGVQAARAAGMRCIAVTT 263 (1057)
T ss_pred cEEEEcCCHHHHHHHHHcCCEEEEECC
Confidence 689999999999999 56888887754
No 60
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.30 E-value=4.4e-11 Score=99.21 Aligned_cols=99 Identities=17% Similarity=0.170 Sum_probs=70.7
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCCC----------C-------CCcc
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSSY----------S-------GETA 202 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~~----------~-------~kp~ 202 (251)
..++.||+.++++.|+++|++++++||.. +......|+.+|+..++..++..+.. . ..+.
T Consensus 70 ~~~l~~g~~~ll~~l~~~g~~~~i~S~~~---~~~~~~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 146 (188)
T TIGR01489 70 SAPIDPGFKEFIAFIKEHGIDFIVISDGN---DFFIDPVLEGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPC 146 (188)
T ss_pred hCCCCccHHHHHHHHHHcCCcEEEEeCCc---HHHHHHHHHHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCCC
Confidence 36899999999999999999999999998 55667778888998766555543210 0 0111
Q ss_pred ccchHHHHHHHHhcCccEEEEEcCCccccccccccCcEE
Q 036571 203 VVYKSSERKRLEKKGYRIIGNIGDQWSDLLGTNAGNRTF 241 (251)
Q Consensus 203 ~~~K~~~r~~L~~~g~~i~~~VGDq~sDi~ga~~g~r~f 241 (251)
...|....+.+....+..+++|||+.+|+.++.....+|
T Consensus 147 g~~K~~~~~~~~~~~~~~~i~iGD~~~D~~aa~~~d~~~ 185 (188)
T TIGR01489 147 GCCKGKVIHKLSEPKYQHIIYIGDGVTDVCPAKLSDVVF 185 (188)
T ss_pred CCCHHHHHHHHHhhcCceEEEECCCcchhchHhcCCccc
Confidence 123655555554321567999999999999996655544
No 61
>PRK06769 hypothetical protein; Validated
Probab=99.29 E-value=4.1e-12 Score=105.91 Aligned_cols=122 Identities=20% Similarity=0.221 Sum_probs=79.9
Q ss_pred CCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcc-----cH
Q 036571 98 GREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPED-----QR 172 (251)
Q Consensus 98 ~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~-----~r 172 (251)
+.++++||.||||--. .+ +.......++||+.++|++|+++|++++++||.+.. ..
T Consensus 3 ~~~~~~~d~d~~~~~~-~~------------------~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~ 63 (173)
T PRK06769 3 NIQAIFIDRDGTIGGD-TT------------------IHYPGSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATI 63 (173)
T ss_pred CCcEEEEeCCCcccCC-CC------------------CCCHHHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCH
Confidence 5789999999999421 00 000113568999999999999999999999998742 11
Q ss_pred HHHHHHHHhcCCCCcceEEEe----CCC-CCCCcccc-chHHHHHHHHhcCccEEEEEcCCcccccccc-ccCcEEEe
Q 036571 173 SVTENNLKNVGFYTWENLILK----GSS-YSGETAVV-YKSSERKRLEKKGYRIIGNIGDQWSDLLGTN-AGNRTFKL 243 (251)
Q Consensus 173 ~~T~~~L~~~G~~~~~~lilr----~~~-~~~kp~~~-~K~~~r~~L~~~g~~i~~~VGDq~sDi~ga~-~g~r~f~l 243 (251)
..+...|+.+|+.. .+.. +++ ..+||.+. |+... +.+. .....+++|||+.+|+.+|. +|..++-+
T Consensus 64 ~~~~~~l~~~g~~~---~~~~~~~~~~~~~~~KP~p~~~~~~~-~~l~-~~p~~~i~IGD~~~Di~aA~~aGi~~i~v 136 (173)
T PRK06769 64 ADFVQELKGFGFDD---IYLCPHKHGDGCECRKPSTGMLLQAA-EKHG-LDLTQCAVIGDRWTDIVAAAKVNATTILV 136 (173)
T ss_pred HHHHHHHHhCCcCE---EEECcCCCCCCCCCCCCCHHHHHHHH-HHcC-CCHHHeEEEcCCHHHHHHHHHCCCeEEEE
Confidence 23555688888754 3332 222 35677664 33222 2221 12346999999999999984 56666544
No 62
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.29 E-value=1.6e-11 Score=103.81 Aligned_cols=91 Identities=15% Similarity=0.111 Sum_probs=62.4
Q ss_pred CCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcce--EEEeCCCC---CCCccccchHHHHHHH
Q 036571 139 GEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWEN--LILKGSSY---SGETAVVYKSSERKRL 213 (251)
Q Consensus 139 ~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~--lilr~~~~---~~kp~~~~K~~~r~~L 213 (251)
...+++||+.++++.|+++ ++++++||+. +..+...|.++|++.++. +....++. ..++.+..|....+.+
T Consensus 65 ~~~~~~pg~~e~L~~L~~~-~~~~IvS~~~---~~~~~~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~ 140 (205)
T PRK13582 65 ATLDPLPGAVEFLDWLRER-FQVVILSDTF---YEFAGPLMRQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKAL 140 (205)
T ss_pred HhCCCCCCHHHHHHHHHhc-CCEEEEeCCc---HHHHHHHHHHcCCchhhcceEEECCCCeEECccccccchHHHHHHHH
Confidence 3467899999999999999 9999999999 667788889999876542 22211110 0011122344444455
Q ss_pred HhcCccEEEEEcCCccccccc
Q 036571 214 EKKGYRIIGNIGDQWSDLLGT 234 (251)
Q Consensus 214 ~~~g~~i~~~VGDq~sDi~ga 234 (251)
... ...+++|||+.+|+..+
T Consensus 141 ~~~-~~~~v~iGDs~~D~~~~ 160 (205)
T PRK13582 141 KSL-GYRVIAAGDSYNDTTML 160 (205)
T ss_pred HHh-CCeEEEEeCCHHHHHHH
Confidence 443 35789999999998766
No 63
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.28 E-value=9e-12 Score=108.60 Aligned_cols=91 Identities=16% Similarity=0.195 Sum_probs=66.6
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCC-CCCCcccc-chHHHHHHHHhcC-
Q 036571 141 APSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSS-YSGETAVV-YKSSERKRLEKKG- 217 (251)
Q Consensus 141 ~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~-~K~~~r~~L~~~g- 217 (251)
..++||+.++|+.|++. ++++++||.+.. +...|+..+++.++.... ...||.+. |... +.+.|
T Consensus 112 ~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~--------~~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a----~~~~~~ 178 (238)
T PRK10748 112 IDVPQATHDTLKQLAKK-WPLVAITNGNAQ--------PELFGLGDYFEFVLRAGPHGRSKPFSDMYHLA----AEKLNV 178 (238)
T ss_pred CCCCccHHHHHHHHHcC-CCEEEEECCCch--------HHHCCcHHhhceeEecccCCcCCCcHHHHHHH----HHHcCC
Confidence 67889999999999875 999999998742 467899887777766554 35677664 3322 22233
Q ss_pred -ccEEEEEcCCc-cccccc-cccCcEEEeC
Q 036571 218 -YRIIGNIGDQW-SDLLGT-NAGNRTFKLP 244 (251)
Q Consensus 218 -~~i~~~VGDq~-sDi~ga-~~g~r~f~lP 244 (251)
...+++|||++ .|+.+| .+|.+++-+.
T Consensus 179 ~~~~~~~VGD~~~~Di~~A~~aG~~~i~v~ 208 (238)
T PRK10748 179 PIGEILHVGDDLTTDVAGAIRCGMQACWIN 208 (238)
T ss_pred ChhHEEEEcCCcHHHHHHHHHCCCeEEEEc
Confidence 24599999995 999999 5688877664
No 64
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.27 E-value=5.4e-11 Score=101.68 Aligned_cols=139 Identities=22% Similarity=0.205 Sum_probs=82.9
Q ss_pred CCcEEEEecCCCccCChhhHhhh-cCCC---------------CCC--------------ChHHHHHHHhcCCCCCchHH
Q 036571 98 GREIWIFDIDETSLSNLPYYAKH-GFGV---------------EPF--------------NSTLFNEWVNKGEAPSLPES 147 (251)
Q Consensus 98 ~~~avvfDIDgTlldn~~~~~~~-~~~~---------------~~~--------------~~~~~~~wv~~~~~~~~pga 147 (251)
.+++++||+||||+++..+..-. .+|. ..+ ..+.+.++. ...++.||+
T Consensus 13 ~~k~iiFD~DGTL~~~~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~ 90 (219)
T TIGR00338 13 SKKLVVFDMDSTLINAETIDEIAKIAGVEEEVSEITERAMRGELDFKASLRERVALLKGLPVELLKEVR--ENLPLTEGA 90 (219)
T ss_pred cCCEEEEeCcccCCCchHHHHHHHHhCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCCHHHHHHHH--hcCCcCCCH
Confidence 46799999999999976532211 1111 001 011122222 346789999
Q ss_pred HHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEE-----------eCCCCCCCccccchHHHHH-HHHh
Q 036571 148 LKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLIL-----------KGSSYSGETAVVYKSSERK-RLEK 215 (251)
Q Consensus 148 ~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lil-----------r~~~~~~kp~~~~K~~~r~-~L~~ 215 (251)
.++++.|+++|++++++||.. +......++.+|+..++...+ .+....++ .|..... .+++
T Consensus 91 ~~~l~~l~~~g~~~~IvS~~~---~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~k~~~~~~~~~~ 163 (219)
T TIGR00338 91 EELVKTLKEKGYKVAVISGGF---DLFAEHVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVDAS----YKGKTLLILLRK 163 (219)
T ss_pred HHHHHHHHHCCCEEEEECCCc---HHHHHHHHHHcCCCceEeeEEEEECCEEEEEecCcccCCc----ccHHHHHHHHHH
Confidence 999999999999999999987 556667778889876542111 11111111 1222222 2223
Q ss_pred cC--ccEEEEEcCCcccccccc-ccCcEEEeCC
Q 036571 216 KG--YRIIGNIGDQWSDLLGTN-AGNRTFKLPD 245 (251)
Q Consensus 216 ~g--~~i~~~VGDq~sDi~ga~-~g~r~f~lPn 245 (251)
.| ...+++|||+.+|+.++. +|..+..-|+
T Consensus 164 ~~~~~~~~i~iGDs~~Di~aa~~ag~~i~~~~~ 196 (219)
T TIGR00338 164 EGISPENTVAVGDGANDLSMIKAAGLGIAFNAK 196 (219)
T ss_pred cCCCHHHEEEEECCHHHHHHHHhCCCeEEeCCC
Confidence 33 345889999999999985 4444433333
No 65
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=99.26 E-value=4.3e-11 Score=99.07 Aligned_cols=147 Identities=20% Similarity=0.274 Sum_probs=99.7
Q ss_pred cCCCCcEEEEecCCCccCChhhHhh--hcCCCCC--C--ChHHHHHHHhcC--CCCCchHHHHHHHHHHHCCCeEEEEeC
Q 036571 95 AGDGREIWIFDIDETSLSNLPYYAK--HGFGVEP--F--NSTLFNEWVNKG--EAPSLPESLKLYKKLLSLGIKIVFLTG 166 (251)
Q Consensus 95 ~~~~~~avvfDIDgTlldn~~~~~~--~~~~~~~--~--~~~~~~~wv~~~--~~~~~pga~ell~~L~~~G~~I~~vTn 166 (251)
.+..+-+|-||||+|||-++|++.. ..|.... | ++..|++-.... -.-|..-+++|+++-+++|-+|+|+||
T Consensus 59 eG~~Pi~VsFDIDDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RGD~i~FvTG 138 (237)
T COG3700 59 EGRPPIAVSFDIDDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIYFVTG 138 (237)
T ss_pred cCCCCeeEeeccCCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCeEEEEec
Confidence 3566789999999999999987532 1222111 1 345566544432 256778899999999999999999999
Q ss_pred CCcccHHHHHHHHHh-cCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCccEEEEEcCCcccccccc----ccCcEE
Q 036571 167 RPEDQRSVTENNLKN-VGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRIIGNIGDQWSDLLGTN----AGNRTF 241 (251)
Q Consensus 167 R~e~~r~~T~~~L~~-~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i~~~VGDq~sDi~ga~----~g~r~f 241 (251)
|+...-+.+.+.|.+ +.+...-.+++.++. +||. +...-..|++.+ +.+..||+.+|+.++. .|.|..
T Consensus 139 Rt~gk~d~vsk~Lak~F~i~~m~pv~f~Gdk--~k~~---qy~Kt~~i~~~~--~~IhYGDSD~Di~AAkeaG~RgIRil 211 (237)
T COG3700 139 RTPGKTDTVSKTLAKNFHITNMNPVIFAGDK--PKPG---QYTKTQWIQDKN--IRIHYGDSDNDITAAKEAGARGIRIL 211 (237)
T ss_pred CCCCcccccchhHHhhcccCCCcceeeccCC--CCcc---cccccHHHHhcC--ceEEecCCchhhhHHHhcCccceeEE
Confidence 997766666666654 555544456666543 3432 222234455544 5578999999999883 466777
Q ss_pred EeCCCCC
Q 036571 242 KLPDPMY 248 (251)
Q Consensus 242 ~lPnp~y 248 (251)
.-||..|
T Consensus 212 RAaNSTy 218 (237)
T COG3700 212 RAANSTY 218 (237)
T ss_pred ecCCccC
Confidence 7799887
No 66
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.23 E-value=1.7e-11 Score=102.45 Aligned_cols=136 Identities=13% Similarity=0.028 Sum_probs=88.0
Q ss_pred CcEEEEecCCCccCChhhHhhhcCCCCCCChHH-HH---HHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCC-CcccHH
Q 036571 99 REIWIFDIDETSLSNLPYYAKHGFGVEPFNSTL-FN---EWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGR-PEDQRS 173 (251)
Q Consensus 99 ~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~-~~---~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR-~e~~r~ 173 (251)
++.||||+|+|+.+.+-+...+ .++.+.. -+ .-......+++||+.++++.|+++|++++++||+ . +.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~---~~ 74 (174)
T TIGR01685 2 PRVIVFDLDGTLWDHYMISLLG----GPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDV---PE 74 (174)
T ss_pred CcEEEEeCCCCCcCcccccccC----CCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCC---hH
Confidence 5689999999998753222111 0111000 00 0001124678999999999999999999999998 5 55
Q ss_pred HHHHHHHhcCCC---------CcceEEEeCCCC-CCCccccchHHHHHHHHh-----cCccEEEEEcCCccccccc-ccc
Q 036571 174 VTENNLKNVGFY---------TWENLILKGSSY-SGETAVVYKSSERKRLEK-----KGYRIIGNIGDQWSDLLGT-NAG 237 (251)
Q Consensus 174 ~T~~~L~~~G~~---------~~~~lilr~~~~-~~kp~~~~K~~~r~~L~~-----~g~~i~~~VGDq~sDi~ga-~~g 237 (251)
.+...|..+|+. .+++.++..+.. +.||.+ ...+.+.+ .....+++|||+..|+.+| .+|
T Consensus 75 ~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~----~i~~~~~~~~~~gl~p~e~l~VgDs~~di~aA~~aG 150 (174)
T TIGR01685 75 WAYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLE----MILQKVNKVDPSVLKPAQILFFDDRTDNVREVWGYG 150 (174)
T ss_pred HHHHHHHhCCcCCCCCcccHHHhceeeeeccCCchHHHHH----HHHHHhhhcccCCCCHHHeEEEcChhHhHHHHHHhC
Confidence 667788888987 677777765542 222221 11222222 2245699999999999998 468
Q ss_pred CcEEEeCC
Q 036571 238 NRTFKLPD 245 (251)
Q Consensus 238 ~r~f~lPn 245 (251)
.+++-++.
T Consensus 151 i~~i~v~~ 158 (174)
T TIGR01685 151 VTSCYCPS 158 (174)
T ss_pred CEEEEcCC
Confidence 88887764
No 67
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=99.21 E-value=6e-11 Score=97.21 Aligned_cols=126 Identities=25% Similarity=0.344 Sum_probs=93.8
Q ss_pred EEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHH
Q 036571 101 IWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLK 180 (251)
Q Consensus 101 avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~ 180 (251)
.||+|||||+..|.- +|- .. -..+.+..-||+.++++.++++||++.++|+|+..+...|..||.
T Consensus 1 VVvsDIDGTiT~SD~------~G~-------i~--~~~G~d~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~ 65 (157)
T PF08235_consen 1 VVVSDIDGTITKSDV------LGH-------IL--PILGKDWTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLA 65 (157)
T ss_pred CEEEeccCCcCccch------hhh-------hh--hccCchhhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHH
Confidence 489999999998731 000 00 012345677999999999999999999999999999999999999
Q ss_pred hc-----CCCCcceEEEeCCC---------CCCCccccchHHHHHHHHhc----CccEEEEEcCCcccccccc-cc---C
Q 036571 181 NV-----GFYTWENLILKGSS---------YSGETAVVYKSSERKRLEKK----GYRIIGNIGDQWSDLLGTN-AG---N 238 (251)
Q Consensus 181 ~~-----G~~~~~~lilr~~~---------~~~kp~~~~K~~~r~~L~~~----g~~i~~~VGDq~sDi~ga~-~g---~ 238 (251)
.+ +||. ..++++++. ..++| -.||....+.|... +-.+..-+|...+|+.+-. +| .
T Consensus 66 ~~~q~~~~lP~-Gpv~~sP~~l~~al~rEvi~~~p-~~fK~~~L~~l~~~f~~~~~pf~agfGN~~tDv~aY~~vGip~~ 143 (157)
T PF08235_consen 66 QHQQQGHNLPD-GPVLLSPDSLFSALHREVISKDP-EEFKIACLRDLRALFPPDGNPFYAGFGNRSTDVIAYKAVGIPKS 143 (157)
T ss_pred HHHhCCccCCC-CCEEECCcchhhhhhccccccCh-HHHHHHHHHHHHHhcCCCCCeEEEecCCcHHHHHHHHHcCCChh
Confidence 99 8886 566776542 12222 26898888888765 6667889999999998753 22 4
Q ss_pred cEEEe
Q 036571 239 RTFKL 243 (251)
Q Consensus 239 r~f~l 243 (251)
|+|.+
T Consensus 144 rIF~I 148 (157)
T PF08235_consen 144 RIFII 148 (157)
T ss_pred hEEEE
Confidence 66654
No 68
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=99.19 E-value=7e-11 Score=90.22 Aligned_cols=64 Identities=25% Similarity=0.432 Sum_probs=52.9
Q ss_pred EEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHh
Q 036571 102 WIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKN 181 (251)
Q Consensus 102 vvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~ 181 (251)
++||+||||... ..++||+.+++++|+++|.+++|+||++...++...+.|++
T Consensus 1 ~l~D~dGvl~~g---------------------------~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~ 53 (101)
T PF13344_consen 1 FLFDLDGVLYNG---------------------------NEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKK 53 (101)
T ss_dssp EEEESTTTSEET---------------------------TEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHH
T ss_pred CEEeCccEeEeC---------------------------CCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHh
Confidence 689999999974 56899999999999999999999999999999999999999
Q ss_pred cCCCCcceEEE
Q 036571 182 VGFYTWENLIL 192 (251)
Q Consensus 182 ~G~~~~~~lil 192 (251)
+||+...+-++
T Consensus 54 ~Gi~~~~~~i~ 64 (101)
T PF13344_consen 54 LGIPVDEDEII 64 (101)
T ss_dssp TTTT--GGGEE
T ss_pred cCcCCCcCEEE
Confidence 99986433333
No 69
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.19 E-value=1.9e-10 Score=98.37 Aligned_cols=102 Identities=21% Similarity=0.249 Sum_probs=75.6
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCC-CCCCccccchHHHHHHHHhcCc
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSS-YSGETAVVYKSSERKRLEKKGY 218 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~L~~~g~ 218 (251)
..++.|++.++|+.|+++ ++++++||.. +......|++.|+..+++.++.+.. ...||++.......+.+.- ..
T Consensus 97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg~---~~~~~~~l~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~-~p 171 (229)
T COG1011 97 LLPDYPEALEALKELGKK-YKLGILTNGA---RPHQERKLRQLGLLDYFDAVFISEDVGVAKPDPEIFEYALEKLGV-PP 171 (229)
T ss_pred hCccChhHHHHHHHHHhh-ccEEEEeCCC---hHHHHHHHHHcCChhhhheEEEecccccCCCCcHHHHHHHHHcCC-Cc
Confidence 368999999999999999 9999999986 6678899999999887766655544 4678877543333233221 14
Q ss_pred cEEEEEcCCc-cccccc-cccCcEEEeCCC
Q 036571 219 RIIGNIGDQW-SDLLGT-NAGNRTFKLPDP 246 (251)
Q Consensus 219 ~i~~~VGDq~-sDi~ga-~~g~r~f~lPnp 246 (251)
..+++|||+. +|+.|| .+|++++-+..+
T Consensus 172 ~~~l~VgD~~~~di~gA~~~G~~~vwi~~~ 201 (229)
T COG1011 172 EEALFVGDSLENDILGARALGMKTVWINRG 201 (229)
T ss_pred ceEEEECCChhhhhHHHHhcCcEEEEECCC
Confidence 4799999998 887887 578887655443
No 70
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.17 E-value=2e-10 Score=98.72 Aligned_cols=98 Identities=15% Similarity=0.104 Sum_probs=64.5
Q ss_pred CCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceE-----EEeCCCC-CCCcccc--------
Q 036571 139 GEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENL-----ILKGSSY-SGETAVV-------- 204 (251)
Q Consensus 139 ~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~l-----ilr~~~~-~~kp~~~-------- 204 (251)
...++.||+.++++.|+++|++++++||.. +..+...|+++ +.. ..+ .+.++.. ..||.+.
T Consensus 71 ~~~~l~pG~~e~l~~l~~~g~~~~IvS~~~---~~~i~~il~~~-~~~-~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~ 145 (219)
T PRK09552 71 ETAEIREGFHEFVQFVKENNIPFYVVSGGM---DFFVYPLLQGL-IPK-EQIYCNGSDFSGEYITITWPHPCDEHCQNHC 145 (219)
T ss_pred hCCCcCcCHHHHHHHHHHcCCeEEEECCCc---HHHHHHHHHHh-CCc-CcEEEeEEEecCCeeEEeccCCccccccccC
Confidence 347899999999999999999999999998 66677777776 543 222 2332221 2333332
Q ss_pred --chHHHHHHHHhcCccEEEEEcCCccccccccccCcEEE
Q 036571 205 --YKSSERKRLEKKGYRIIGNIGDQWSDLLGTNAGNRTFK 242 (251)
Q Consensus 205 --~K~~~r~~L~~~g~~i~~~VGDq~sDi~ga~~g~r~f~ 242 (251)
-|....+++... ...+++|||+.+|+.++..+..+|.
T Consensus 146 ~~~K~~~l~~~~~~-~~~~i~iGDs~~Di~aa~~Ag~~~a 184 (219)
T PRK09552 146 GCCKPSLIRKLSDT-NDFHIVIGDSITDLEAAKQADKVFA 184 (219)
T ss_pred CCchHHHHHHhccC-CCCEEEEeCCHHHHHHHHHCCccee
Confidence 134433444322 3358999999999999854434443
No 71
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.13 E-value=1.2e-10 Score=95.30 Aligned_cols=117 Identities=21% Similarity=0.240 Sum_probs=72.1
Q ss_pred CcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHH
Q 036571 99 REIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENN 178 (251)
Q Consensus 99 ~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~ 178 (251)
++.|+||+||||+++..++...+- .. ..--..++. .+++|+++|++++++||++ +..+...
T Consensus 1 ~~~~~~D~Dgtl~~~~~~~~~~~~--------~~------~~~~~~~~~--~i~~Lk~~G~~i~IvTn~~---~~~~~~~ 61 (154)
T TIGR01670 1 IRLLILDVDGVLTDGKIYYTNNGE--------EI------KAFNVRDGY--GIRCALKSGIEVAIITGRK---AKLVEDR 61 (154)
T ss_pred CeEEEEeCceeEEcCeEEECCCCc--------EE------EEEechhHH--HHHHHHHCCCEEEEEECCC---CHHHHHH
Confidence 468999999999997543322100 00 000011222 7999999999999999999 5577788
Q ss_pred HHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcC--ccEEEEEcCCccccccccccCcEEEeCC
Q 036571 179 LKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKG--YRIIGNIGDQWSDLLGTNAGNRTFKLPD 245 (251)
Q Consensus 179 L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g--~~i~~~VGDq~sDi~ga~~g~r~f~lPn 245 (251)
|+++|+..++. . ..+|| .. ....+.+.| .+.+++|||+.+|+..+......|.+.|
T Consensus 62 l~~~gi~~~~~----~--~~~k~--~~---~~~~~~~~~~~~~~~~~vGDs~~D~~~~~~ag~~~~v~~ 119 (154)
T TIGR01670 62 CKTLGITHLYQ----G--QSNKL--IA---FSDILEKLALAPENVAYIGDDLIDWPVMEKVGLSVAVAD 119 (154)
T ss_pred HHHcCCCEEEe----c--ccchH--HH---HHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCCeEecCC
Confidence 99999975432 1 12232 21 122222222 3469999999999999843333355443
No 72
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.13 E-value=1.3e-10 Score=92.23 Aligned_cols=112 Identities=13% Similarity=0.045 Sum_probs=70.1
Q ss_pred cEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCC-CcccHHHHHHH
Q 036571 100 EIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGR-PEDQRSVTENN 178 (251)
Q Consensus 100 ~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR-~e~~r~~T~~~ 178 (251)
+.++||+||||++..... .+... -+ ...+++||+.++|+.|+++|++++++||+ + +..+...
T Consensus 1 kli~~DlD~Tl~~~~~~~---------~~~~~---~~--~~~~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~---~~~~~~~ 63 (128)
T TIGR01681 1 KVIVFDLDNTLWTGENIV---------VGEDP---II--DLEVTIKEIRDKLQTLKKNGFLLALASYNDD---PHVAYEL 63 (128)
T ss_pred CEEEEeCCCCCCCCCccc---------ccCCc---ch--hhHHHHHHHHHHHHHHHHCCeEEEEEeCCCC---HHHHHHH
Confidence 478999999999752100 00000 00 00168999999999999999999999999 5 4455566
Q ss_pred HHhcC-------CCCcceEEEeCCCCCCCccccchHHHHHHHHhcC----ccEEEEEcCCccccccc
Q 036571 179 LKNVG-------FYTWENLILKGSSYSGETAVVYKSSERKRLEKKG----YRIIGNIGDQWSDLLGT 234 (251)
Q Consensus 179 L~~~G-------~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g----~~i~~~VGDq~sDi~ga 234 (251)
|+..| +..++..+..+.. .++|.+ + +..+++.| ...+++|||+..++.+.
T Consensus 64 l~~~~~~~~i~~l~~~f~~~~~~~~-~pkp~~-~----~~a~~~lg~~~~p~~~l~igDs~~n~~~~ 124 (128)
T TIGR01681 64 LKIFEDFGIIFPLAEYFDPLTIGYW-LPKSPR-L----VEIALKLNGVLKPKSILFVDDRPDNNEEV 124 (128)
T ss_pred HHhccccccchhhHhhhhhhhhcCC-CcHHHH-H----HHHHHHhcCCCCcceEEEECCCHhHHHHH
Confidence 67677 4555554444422 233322 2 22222233 34699999999887653
No 73
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=99.12 E-value=1.5e-10 Score=100.15 Aligned_cols=147 Identities=16% Similarity=0.185 Sum_probs=98.7
Q ss_pred CCCcEEEEecCCCccCChhhHhhh------cCCC-------------C----------C-CChHHHHHHHhc--------
Q 036571 97 DGREIWIFDIDETSLSNLPYYAKH------GFGV-------------E----------P-FNSTLFNEWVNK-------- 138 (251)
Q Consensus 97 ~~~~avvfDIDgTlldn~~~~~~~------~~~~-------------~----------~-~~~~~~~~wv~~-------- 138 (251)
.+..+++||+||||+||...|.+. .+|. . . .++-+|+++..+
T Consensus 8 ~~~~~~lfD~dG~lvdte~~y~~~~~~~~~~ygk~~~~~~~~~~mG~~~~eaa~~~~~~~~dp~s~ee~~~e~~~~~~~~ 87 (222)
T KOG2914|consen 8 LKVSACLFDMDGTLVDTEDLYTEAWQELLDRYGKPYPWDVKVKSMGKRTSEAARLFVKKLPDPVSREEFNKEEEEILDRL 87 (222)
T ss_pred cceeeEEEecCCcEEecHHHHHHHHHHHHHHcCCCChHHHHHHHcCCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Confidence 456799999999999998877662 1221 0 0 122233333332
Q ss_pred -CCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHh-cCCCCcceEEEeCCC---CCCCccccchHHHHHHH
Q 036571 139 -GEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKN-VGFYTWENLILKGSS---YSGETAVVYKSSERKRL 213 (251)
Q Consensus 139 -~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~-~G~~~~~~lilr~~~---~~~kp~~~~K~~~r~~L 213 (251)
....+.||+.+|++.|+.+|++++++|+++....+.-..++.. +.. +.+.++ +++ ..+||+|...-..++.+
T Consensus 88 ~~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~--f~~~v~-~d~~~v~~gKP~Pdi~l~A~~~l 164 (222)
T KOG2914|consen 88 FMNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKN--FSHVVL-GDDPEVKNGKPDPDIYLKAAKRL 164 (222)
T ss_pred ccccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHh--cCCCee-cCCccccCCCCCchHHHHHHHhc
Confidence 4578999999999999999999999999986666555555542 222 123334 433 36788885332333344
Q ss_pred HhcCccEEEEEcCCccccccc-cccCcEEEeCCC
Q 036571 214 EKKGYRIIGNIGDQWSDLLGT-NAGNRTFKLPDP 246 (251)
Q Consensus 214 ~~~g~~i~~~VGDq~sDi~ga-~~g~r~f~lPnp 246 (251)
......-+++++|+...++++ .+|+.++.+|++
T Consensus 165 ~~~~~~k~lVfeds~~Gv~aa~aagm~vi~v~~~ 198 (222)
T KOG2914|consen 165 GVPPPSKCLVFEDSPVGVQAAKAAGMQVVGVATP 198 (222)
T ss_pred CCCCccceEEECCCHHHHHHHHhcCCeEEEecCC
Confidence 333335689999999999999 568999999983
No 74
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.09 E-value=1.2e-10 Score=96.04 Aligned_cols=85 Identities=11% Similarity=0.085 Sum_probs=61.7
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCC-CCCCccccchHHHHHHHHhcCc
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSS-YSGETAVVYKSSERKRLEKKGY 218 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~L~~~g~ 218 (251)
..+++||+.++|+ +++++||.+ +......|+++|+..+++.++..+. ...||.+.......+.+. ...
T Consensus 88 ~~~~~~g~~~~L~-------~~~i~Tn~~---~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~f~~~~~~~~-~~p 156 (175)
T TIGR01493 88 NLPPWPDSAAALA-------RVAILSNAS---HWAFDQFAQQAGLPWYFDRAFSVDTVRAYKPDPVVYELVFDTVG-LPP 156 (175)
T ss_pred cCCCCCchHHHHH-------HHhhhhCCC---HHHHHHHHHHCCCHHHHhhhccHhhcCCCCCCHHHHHHHHHHHC-CCH
Confidence 4678999999998 388999998 6677778899999887776666655 467887753222222221 123
Q ss_pred cEEEEEcCCcccccccc
Q 036571 219 RIIGNIGDQWSDLLGTN 235 (251)
Q Consensus 219 ~i~~~VGDq~sDi~ga~ 235 (251)
..+++|||+..|+.||.
T Consensus 157 ~~~l~vgD~~~Di~~A~ 173 (175)
T TIGR01493 157 DRVLMVAAHQWDLIGAR 173 (175)
T ss_pred HHeEeEecChhhHHHHh
Confidence 46899999999999985
No 75
>PLN02811 hydrolase
Probab=99.08 E-value=8.4e-10 Score=94.89 Aligned_cols=105 Identities=20% Similarity=0.275 Sum_probs=72.5
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCC--C-CCCCccccchHHHHHHHHh-
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGS--S-YSGETAVVYKSSERKRLEK- 215 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~--~-~~~kp~~~~K~~~r~~L~~- 215 (251)
..+++||+.++|+.|+++|++++++||.... ......++..|+..+++.++..+ + ..+||.+..-....+.+..
T Consensus 76 ~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~--~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~ 153 (220)
T PLN02811 76 TSDLMPGAERLVRHLHAKGIPIAIATGSHKR--HFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDG 153 (220)
T ss_pred hCCCCccHHHHHHHHHHCCCcEEEEeCCchh--hHHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHHhCCC
Confidence 4678999999999999999999999998732 12223333346666677777766 3 3567777432222233321
Q ss_pred -cCccEEEEEcCCccccccc-cccCcEEEeCCC
Q 036571 216 -KGYRIIGNIGDQWSDLLGT-NAGNRTFKLPDP 246 (251)
Q Consensus 216 -~g~~i~~~VGDq~sDi~ga-~~g~r~f~lPnp 246 (251)
.....+++|||+.+|+++| .+|.+++-++.+
T Consensus 154 ~~~~~~~v~IgDs~~di~aA~~aG~~~i~v~~~ 186 (220)
T PLN02811 154 PVDPGKVLVFEDAPSGVEAAKNAGMSVVMVPDP 186 (220)
T ss_pred CCCccceEEEeccHhhHHHHHHCCCeEEEEeCC
Confidence 1235699999999999999 568888877653
No 76
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=99.08 E-value=7.6e-10 Score=102.06 Aligned_cols=131 Identities=15% Similarity=0.166 Sum_probs=85.3
Q ss_pred CCcEEEEecCCCccCChh--hHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCC-------
Q 036571 98 GREIWIFDIDETSLSNLP--YYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRP------- 168 (251)
Q Consensus 98 ~~~avvfDIDgTlldn~~--~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~------- 168 (251)
+++.++||-||||..... |... .....+++||+.++|++|+++|++++++||.+
T Consensus 1 ~~k~l~lDrDgtl~~~~~~~y~~~-----------------~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~ 63 (354)
T PRK05446 1 MQKILFIDRDGTLIEEPPTDFQVD-----------------SLDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSF 63 (354)
T ss_pred CCcEEEEeCCCCccCCCCcccccc-----------------CcccceECcCHHHHHHHHHhCCCeEEEEECCccccCccc
Confidence 367899999999998531 1110 01247899999999999999999999999962
Q ss_pred -cc----cHHHHHHHHHhcCCCCcceEEEeCC----C-CCCCccccchHHHHHHHHhcCccEEEEEcCCccccccc-ccc
Q 036571 169 -ED----QRSVTENNLKNVGFYTWENLILKGS----S-YSGETAVVYKSSERKRLEKKGYRIIGNIGDQWSDLLGT-NAG 237 (251)
Q Consensus 169 -e~----~r~~T~~~L~~~G~~~~~~lilr~~----~-~~~kp~~~~K~~~r~~L~~~g~~i~~~VGDq~sDi~ga-~~g 237 (251)
+. .+..+.+.|...|+. .+.++++.. . ..+||.+..-....+.+. .....+++|||+.+|+.+| ++|
T Consensus 64 ~~~~l~~~~~~i~~iL~~~gl~-fd~i~i~~~~~sd~~~~rKP~p~~l~~a~~~l~-v~~~~svmIGDs~sDi~aAk~aG 141 (354)
T PRK05446 64 PQEDFDPPHNLMMQIFESQGIK-FDEVLICPHFPEDNCSCRKPKTGLVEEYLAEGA-IDLANSYVIGDRETDVQLAENMG 141 (354)
T ss_pred cHHHHhhHHHHHHHHHHHcCCc-eeeEEEeCCcCcccCCCCCCCHHHHHHHHHHcC-CCcccEEEEcCCHHHHHHHHHCC
Confidence 11 134566788888986 245555531 2 245664422111111111 1235689999999999998 567
Q ss_pred CcEEEeCCCCC
Q 036571 238 NRTFKLPDPMY 248 (251)
Q Consensus 238 ~r~f~lPnp~y 248 (251)
.+++.+ ||-.
T Consensus 142 i~~I~v-~~~~ 151 (354)
T PRK05446 142 IKGIRY-ARET 151 (354)
T ss_pred CeEEEE-ECCC
Confidence 776544 5543
No 77
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.07 E-value=1.6e-10 Score=96.24 Aligned_cols=118 Identities=15% Similarity=0.155 Sum_probs=78.3
Q ss_pred CCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHH
Q 036571 98 GREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTEN 177 (251)
Q Consensus 98 ~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~ 177 (251)
..+++|||+|||+.|+.-++...+-....|+. ..| .-++.|+++|++++++||++ ...+..
T Consensus 6 ~i~~~v~d~dGv~tdg~~~~~~~g~~~~~~~~--------------~D~--~~~~~L~~~Gi~laIiT~k~---~~~~~~ 66 (169)
T TIGR02726 6 NIKLVILDVDGVMTDGRIVINDEGIESRNFDI--------------KDG--MGVIVLQLCGIDVAIITSKK---SGAVRH 66 (169)
T ss_pred cCeEEEEeCceeeECCeEEEcCCCcEEEEEec--------------chH--HHHHHHHHCCCEEEEEECCC---cHHHHH
Confidence 47899999999999987666543322122221 111 23667899999999999998 667888
Q ss_pred HHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCc--cEEEEEcCCccccccccccCcEEEeCC
Q 036571 178 NLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGY--RIIGNIGDQWSDLLGTNAGNRTFKLPD 245 (251)
Q Consensus 178 ~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~--~i~~~VGDq~sDi~ga~~g~r~f~lPn 245 (251)
.|+.+|+..++..+ ++|| . ..+..+...|. ..+++|||+.+|+.++......|..+|
T Consensus 67 ~l~~lgi~~~f~~~------kpkp--~---~~~~~~~~l~~~~~ev~~iGD~~nDi~~~~~ag~~~am~n 125 (169)
T TIGR02726 67 RAEELKIKRFHEGI------KKKT--E---PYAQMLEEMNISDAEVCYVGDDLVDLSMMKRVGLAVAVGD 125 (169)
T ss_pred HHHHCCCcEEEecC------CCCH--H---HHHHHHHHcCcCHHHEEEECCCHHHHHHHHHCCCeEECcC
Confidence 99999997654421 2333 1 22222333333 469999999999999865445565555
No 78
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.03 E-value=2.8e-10 Score=92.42 Aligned_cols=129 Identities=13% Similarity=0.015 Sum_probs=79.7
Q ss_pred CCcEEEEecCCCccCChhhHhhhcCCCCCCC-hHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHH
Q 036571 98 GREIWIFDIDETSLSNLPYYAKHGFGVEPFN-STLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTE 176 (251)
Q Consensus 98 ~~~avvfDIDgTlldn~~~~~~~~~~~~~~~-~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~ 176 (251)
++..+|+|+||||+.+..--.. ......+. ......-.......+.||+.++|+.|+ ++++++++|+.+ ++.+.
T Consensus 1 ~k~~lvldld~tl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~---~~~~~ 75 (148)
T smart00577 1 KKKTLVLDLDETLVHSTHRSFK-EWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRAS-ELFELVVFTAGL---RMYAD 75 (148)
T ss_pred CCcEEEEeCCCCeECCCCCcCC-CCCccceEEEEEeCCceEEEEEEECCCHHHHHHHHH-hccEEEEEeCCc---HHHHH
Confidence 3678999999999987420000 00000000 000000000112467999999999998 679999999999 66777
Q ss_pred HHHHhcCCCC-cceEEEeCCC-CCCCccccchHHHHHHHHhcCccEEEEEcCCcccccccc
Q 036571 177 NNLKNVGFYT-WENLILKGSS-YSGETAVVYKSSERKRLEKKGYRIIGNIGDQWSDLLGTN 235 (251)
Q Consensus 177 ~~L~~~G~~~-~~~lilr~~~-~~~kp~~~~K~~~r~~L~~~g~~i~~~VGDq~sDi~ga~ 235 (251)
..|+.+|+.. ++..++..++ ..+||. ..|...+.. ...+.+++|||+..|+..++
T Consensus 76 ~il~~l~~~~~~f~~i~~~~d~~~~KP~-~~k~l~~l~---~~p~~~i~i~Ds~~~~~aa~ 132 (148)
T smart00577 76 PVLDLLDPKKYFGYRRLFRDECVFVKGK-YVKDLSLLG---RDLSNVIIIDDSPDSWPFHP 132 (148)
T ss_pred HHHHHhCcCCCEeeeEEECccccccCCe-EeecHHHcC---CChhcEEEEECCHHHhhcCc
Confidence 7788888853 3465665554 456764 223222221 23457999999999999985
No 79
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.02 E-value=2e-09 Score=89.45 Aligned_cols=109 Identities=16% Similarity=0.188 Sum_probs=75.3
Q ss_pred CCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHH
Q 036571 97 DGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTE 176 (251)
Q Consensus 97 ~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~ 176 (251)
.+.+++++|+|||++... ...++|++.++|+.|+++|++++++||++. .....
T Consensus 23 ~~v~~vv~D~Dgtl~~~~-------------------------~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~--~~~~~ 75 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYPD-------------------------HNEAYPALRDWIEELKAAGRKLLIVSNNAG--EQRAK 75 (170)
T ss_pred CCCCEEEEecCCccccCC-------------------------CCCcChhHHHHHHHHHHcCCEEEEEeCCch--HHHHH
Confidence 578999999999998631 247899999999999999999999999873 22334
Q ss_pred HHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCc--cEEEEEcCCc-cccccc-cccCcEEEe
Q 036571 177 NNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGY--RIIGNIGDQW-SDLLGT-NAGNRTFKL 243 (251)
Q Consensus 177 ~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~--~i~~~VGDq~-sDi~ga-~~g~r~f~l 243 (251)
..++.+|+..+ . ...||.+..-.. .+++.|. ..+++|||+. +|+.+| .+|.+++-+
T Consensus 76 ~~~~~~gl~~~----~----~~~KP~p~~~~~---~l~~~~~~~~~~l~IGDs~~~Di~aA~~aGi~~i~v 135 (170)
T TIGR01668 76 AVEKALGIPVL----P----HAVKPPGCAFRR---AHPEMGLTSEQVAVVGDRLFTDVMGGNRNGSYTILV 135 (170)
T ss_pred HHHHHcCCEEE----c----CCCCCChHHHHH---HHHHcCCCHHHEEEECCcchHHHHHHHHcCCeEEEE
Confidence 44566776431 1 123554432212 2222232 4589999998 799999 457776554
No 80
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=99.01 E-value=2.2e-09 Score=93.78 Aligned_cols=101 Identities=14% Similarity=0.299 Sum_probs=72.1
Q ss_pred CCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHH
Q 036571 97 DGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTE 176 (251)
Q Consensus 97 ~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~ 176 (251)
+..++++||+|||+.+. ..++||+.+++++|+++|++++|+||++.. +....
T Consensus 6 ~~~~~~~~D~dG~l~~~---------------------------~~~~pga~e~L~~L~~~G~~~~ivTN~~~~-~~~~~ 57 (242)
T TIGR01459 6 NDYDVFLLDLWGVIIDG---------------------------NHTYPGAVQNLNKIIAQGKPVYFVSNSPRN-IFSLH 57 (242)
T ss_pred hcCCEEEEecccccccC---------------------------CccCccHHHHHHHHHHCCCEEEEEeCCCCC-hHHHH
Confidence 45789999999999875 568999999999999999999999997643 44445
Q ss_pred HHHHhcCCCC-cceEEEeCCCCCCCccccchHHHHHHHHhcCc--cEEEEEcCCccccc
Q 036571 177 NNLKNVGFYT-WENLILKGSSYSGETAVVYKSSERKRLEKKGY--RIIGNIGDQWSDLL 232 (251)
Q Consensus 177 ~~L~~~G~~~-~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~--~i~~~VGDq~sDi~ 232 (251)
+.|+++|++. +++.++.+.... ....+..+.+.|. ..+.+|||...|+.
T Consensus 58 ~~L~~~gl~~~~~~~Ii~s~~~~-------~~~l~~~~~~~~~~~~~~~~vGd~~~d~~ 109 (242)
T TIGR01459 58 KTLKSLGINADLPEMIISSGEIA-------VQMILESKKRFDIRNGIIYLLGHLENDII 109 (242)
T ss_pred HHHHHCCCCccccceEEccHHHH-------HHHHHhhhhhccCCCceEEEeCCcccchh
Confidence 7899999987 677777654210 1112222222222 35788898776664
No 81
>PLN02645 phosphoglycolate phosphatase
Probab=99.00 E-value=1.3e-09 Score=98.83 Aligned_cols=70 Identities=23% Similarity=0.337 Sum_probs=61.0
Q ss_pred CCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHH
Q 036571 98 GREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTEN 177 (251)
Q Consensus 98 ~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~ 177 (251)
..++++||+||||++. ..++||+.++++.|+++|++++|+|||+...+....+
T Consensus 27 ~~~~~~~D~DGtl~~~---------------------------~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~ 79 (311)
T PLN02645 27 SVETFIFDCDGVIWKG---------------------------DKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGK 79 (311)
T ss_pred hCCEEEEeCcCCeEeC---------------------------CccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHH
Confidence 4789999999999985 3578999999999999999999999999888889899
Q ss_pred HHHhcCCCCcceEEEeC
Q 036571 178 NLKNVGFYTWENLILKG 194 (251)
Q Consensus 178 ~L~~~G~~~~~~lilr~ 194 (251)
.|+++||+...+.++.+
T Consensus 80 ~l~~lGi~~~~~~I~ts 96 (311)
T PLN02645 80 KFESLGLNVTEEEIFSS 96 (311)
T ss_pred HHHHCCCCCChhhEeeh
Confidence 99999998655555543
No 82
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=98.95 E-value=1.1e-08 Score=87.62 Aligned_cols=91 Identities=16% Similarity=0.145 Sum_probs=64.6
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcc--eEEEeCCC-CCCC--ccccchHHHHHHHH
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWE--NLILKGSS-YSGE--TAVVYKSSERKRLE 214 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~--~lilr~~~-~~~k--p~~~~K~~~r~~L~ 214 (251)
..++.||+.++++.|++.| +++++||.. +..+...++.+|++.++ ++.+.+.+ ..+. ..+..|....+.+.
T Consensus 66 ~i~l~pga~ell~~lk~~~-~~~IVS~~~---~~~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~~~~~~K~~~l~~l~ 141 (203)
T TIGR02137 66 TLKPLEGAVEFVDWLRERF-QVVILSDTF---YEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFK 141 (203)
T ss_pred hCCCCccHHHHHHHHHhCC-eEEEEeCCh---HHHHHHHHHHcCCchhhceeeEEecCCeeECeeecCcchHHHHHHHHH
Confidence 3578999999999999985 999999998 66778888999998644 24443211 1111 11234666666666
Q ss_pred hcCccEEEEEcCCcccccccc
Q 036571 215 KKGYRIIGNIGDQWSDLLGTN 235 (251)
Q Consensus 215 ~~g~~i~~~VGDq~sDi~ga~ 235 (251)
+.|. .+++|||+.+|+....
T Consensus 142 ~~~~-~~v~vGDs~nDl~ml~ 161 (203)
T TIGR02137 142 SLYY-RVIAAGDSYNDTTMLS 161 (203)
T ss_pred hhCC-CEEEEeCCHHHHHHHH
Confidence 5554 5788999999998874
No 83
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=98.94 E-value=6.7e-10 Score=93.33 Aligned_cols=112 Identities=24% Similarity=0.314 Sum_probs=70.8
Q ss_pred CCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHH
Q 036571 98 GREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTEN 177 (251)
Q Consensus 98 ~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~ 177 (251)
+++.|+||+||||+++.-+....+-.-..++ . .. ...++.|+++|++++++|||+ ...+..
T Consensus 20 ~ikli~~D~Dgtl~~~~i~~~~~~~~~~~~~------------~--~d--~~~i~~L~~~Gi~v~I~T~~~---~~~v~~ 80 (183)
T PRK09484 20 NIRLLICDVDGVFSDGLIYMGNNGEELKAFN------------V--RD--GYGIRCLLTSGIEVAIITGRK---SKLVED 80 (183)
T ss_pred CceEEEEcCCeeeecCEEEEcCCCCEEEEEe------------c--cc--hHHHHHHHHCCCEEEEEeCCC---cHHHHH
Confidence 5899999999999997432211100000010 0 00 135677888999999999998 567778
Q ss_pred HHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcC--ccEEEEEcCCcccccccc-ccCc
Q 036571 178 NLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKG--YRIIGNIGDQWSDLLGTN-AGNR 239 (251)
Q Consensus 178 ~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g--~~i~~~VGDq~sDi~ga~-~g~r 239 (251)
.++++|+..++. +. ..|+ ...+..+++.| ...+++|||+.+|+..+. +|..
T Consensus 81 ~l~~lgl~~~f~----g~--~~k~-----~~l~~~~~~~gl~~~ev~~VGDs~~D~~~a~~aG~~ 134 (183)
T PRK09484 81 RMTTLGITHLYQ----GQ--SNKL-----IAFSDLLEKLAIAPEQVAYIGDDLIDWPVMEKVGLS 134 (183)
T ss_pred HHHHcCCceeec----CC--CcHH-----HHHHHHHHHhCCCHHHEEEECCCHHHHHHHHHCCCe
Confidence 888999865432 21 2222 23333344444 347999999999999984 4554
No 84
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=98.94 E-value=1.2e-08 Score=87.44 Aligned_cols=99 Identities=13% Similarity=0.010 Sum_probs=64.1
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcc---eEEEeCCC-CCCCcccc----------c
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWE---NLILKGSS-YSGETAVV----------Y 205 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~---~lilr~~~-~~~kp~~~----------~ 205 (251)
..++.||+.++++.|+++|++++++|+.. +......|+.++..... ++.+.+.. ...+|.+. -
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~---~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~ 144 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGM---DFFVYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCC 144 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCc---HHHHHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCC
Confidence 57899999999999999999999999997 55566666666432211 23333222 12233221 1
Q ss_pred hHHHHHHHHhcCccEEEEEcCCccccccccccCcEEE
Q 036571 206 KSSERKRLEKKGYRIIGNIGDQWSDLLGTNAGNRTFK 242 (251)
Q Consensus 206 K~~~r~~L~~~g~~i~~~VGDq~sDi~ga~~g~r~f~ 242 (251)
|....+++... ...+++|||+.+|+.++..+..+|.
T Consensus 145 K~~~l~~~~~~-~~~~i~iGDg~~D~~~a~~Ad~~~a 180 (214)
T TIGR03333 145 KPSLIRKLSEP-NDYHIVIGDSVTDVEAAKQSDLCFA 180 (214)
T ss_pred HHHHHHHHhhc-CCcEEEEeCCHHHHHHHHhCCeeEe
Confidence 44444444433 3456899999999999865555443
No 85
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.93 E-value=5.2e-09 Score=93.60 Aligned_cols=73 Identities=16% Similarity=0.285 Sum_probs=60.9
Q ss_pred CCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCC-chHHHHHHHHHHHCCCeEEEEeCCCcccHHHH
Q 036571 97 DGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPS-LPESLKLYKKLLSLGIKIVFLTGRPEDQRSVT 175 (251)
Q Consensus 97 ~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~-~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T 175 (251)
.-++.|+||+||||++... .... -|++.++|++|+++|++++++||+. |+..
T Consensus 124 ~~~kvIvFDLDgTLi~~~~------------------------~v~irdPgV~EaL~~LkekGikLaIaTS~~---Re~v 176 (301)
T TIGR01684 124 EPPHVVVFDLDSTLITDEE------------------------PVRIRDPRIYDSLTELKKRGCILVLWSYGD---RDHV 176 (301)
T ss_pred ccceEEEEecCCCCcCCCC------------------------ccccCCHHHHHHHHHHHHCCCEEEEEECCC---HHHH
Confidence 4578999999999998621 2333 4999999999999999999999998 7777
Q ss_pred HHHHHhcCCCCcceEEEeCCC
Q 036571 176 ENNLKNVGFYTWENLILKGSS 196 (251)
Q Consensus 176 ~~~L~~~G~~~~~~lilr~~~ 196 (251)
.+.|+++|+..+++.++.+.+
T Consensus 177 ~~~L~~lGLd~YFdvIIs~Gd 197 (301)
T TIGR01684 177 VESMRKVKLDRYFDIIISGGH 197 (301)
T ss_pred HHHHHHcCCCcccCEEEECCc
Confidence 889999999988877776654
No 86
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=98.93 E-value=1.1e-08 Score=84.03 Aligned_cols=94 Identities=20% Similarity=0.179 Sum_probs=62.7
Q ss_pred CCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcce--EEEeCCCC-C----C--CccccchHHH
Q 036571 139 GEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWEN--LILKGSSY-S----G--ETAVVYKSSE 209 (251)
Q Consensus 139 ~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~--lilr~~~~-~----~--kp~~~~K~~~ 209 (251)
...++.||+.++++.++++|++++++|+.. +..+...+..+|+..+.. +....++. . + .+...-|...
T Consensus 70 ~~~~~~~g~~~~l~~l~~~g~~~~ivS~~~---~~~i~~~~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~ 146 (177)
T TIGR01488 70 RQVALRPGARELISWLKERGIDTVIVSGGF---DFFVEPVAEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKV 146 (177)
T ss_pred hcCCcCcCHHHHHHHHHHCCCEEEEECCCc---HHHHHHHHHHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHH
Confidence 346688999999999999999999999998 667788888889875432 21211110 1 1 1112335544
Q ss_pred HHHHH-hcC--ccEEEEEcCCcccccccc
Q 036571 210 RKRLE-KKG--YRIIGNIGDQWSDLLGTN 235 (251)
Q Consensus 210 r~~L~-~~g--~~i~~~VGDq~sDi~ga~ 235 (251)
.+++. ..| +..+++|||+.+|+..+.
T Consensus 147 l~~~~~~~~~~~~~~~~iGDs~~D~~~~~ 175 (177)
T TIGR01488 147 LKELLEESKITLKKIIAVGDSVNDLPMLK 175 (177)
T ss_pred HHHHHHHhCCCHHHEEEEeCCHHHHHHHh
Confidence 44433 223 456899999999987653
No 87
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=98.93 E-value=1.5e-08 Score=85.37 Aligned_cols=103 Identities=19% Similarity=0.127 Sum_probs=68.3
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcce--EEEeCCC-CCCCcc-----ccchHH-HHH
Q 036571 141 APSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWEN--LILKGSS-YSGETA-----VVYKSS-ERK 211 (251)
Q Consensus 141 ~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~--lilr~~~-~~~kp~-----~~~K~~-~r~ 211 (251)
..+.|++.++++.++++|++++++|+.. +......++.+|+...+. +....++ ..+++. ...|.. .+.
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~---~~~v~~~~~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~ 162 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSASL---TILVKPLARILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAE 162 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCCc---HHHHHHHHHHcCCcceEecceEEcCCCEEeCCccCCCCCChHHHHHHHH
Confidence 4689999999999999999999999998 456666777789875432 2221221 122211 112332 223
Q ss_pred HHHhcCcc--EEEEEcCCcccccccc-ccCcEEEeCCC
Q 036571 212 RLEKKGYR--IIGNIGDQWSDLLGTN-AGNRTFKLPDP 246 (251)
Q Consensus 212 ~L~~~g~~--i~~~VGDq~sDi~ga~-~g~r~f~lPnp 246 (251)
.+.+.+.. .++++||+.+|+.... +|..++.-|+|
T Consensus 163 ~~~~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~v~~~~ 200 (202)
T TIGR01490 163 LLAEEQIDLKDSYAYGDSISDLPLLSLVGHPYVVNPDK 200 (202)
T ss_pred HHHHcCCCHHHcEeeeCCcccHHHHHhCCCcEEeCCCC
Confidence 33444543 6888999999999884 46677777776
No 88
>PRK10444 UMP phosphatase; Provisional
Probab=98.92 E-value=5.1e-09 Score=92.23 Aligned_cols=94 Identities=18% Similarity=0.291 Sum_probs=70.1
Q ss_pred CcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHH
Q 036571 99 REIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENN 178 (251)
Q Consensus 99 ~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~ 178 (251)
++.++||+||||++. ..++|++.++++.|+++|.+++|+|||+...+....+.
T Consensus 1 ~~~v~~DlDGtL~~~---------------------------~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~ 53 (248)
T PRK10444 1 IKNVICDIDGVLMHD---------------------------NVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANR 53 (248)
T ss_pred CcEEEEeCCCceEeC---------------------------CeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHH
Confidence 368999999999985 36899999999999999999999999999889999999
Q ss_pred HHhcCCCCcceEEEeCCC---------CCCCccccchHHHHHHHHhcCcc
Q 036571 179 LKNVGFYTWENLILKGSS---------YSGETAVVYKSSERKRLEKKGYR 219 (251)
Q Consensus 179 L~~~G~~~~~~lilr~~~---------~~~kp~~~~K~~~r~~L~~~g~~ 219 (251)
|.++|++.-.+.++.+.. ...+....-..+.++++.+.|++
T Consensus 54 l~~~G~~~~~~~i~ts~~~~~~~L~~~~~~~v~~~g~~~l~~~l~~~g~~ 103 (248)
T PRK10444 54 FATAGVDVPDSVFYTSAMATADFLRRQEGKKAYVIGEGALIHELYKAGFT 103 (248)
T ss_pred HHHcCCCCCHhhEecHHHHHHHHHHhCCCCEEEEEcCHHHHHHHHHCcCE
Confidence 999999754444444321 00111111245666777766665
No 89
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=98.91 E-value=4.8e-09 Score=92.71 Aligned_cols=65 Identities=18% Similarity=0.256 Sum_probs=55.7
Q ss_pred cEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHH
Q 036571 100 EIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNL 179 (251)
Q Consensus 100 ~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L 179 (251)
++++||+||||++... ....++|++.++++.|+++|++++|+|||+...++...+.|
T Consensus 2 k~i~~D~DGtl~~~~~-----------------------~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l 58 (257)
T TIGR01458 2 KGVLLDISGVLYISDA-----------------------KSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERL 58 (257)
T ss_pred CEEEEeCCCeEEeCCC-----------------------cccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH
Confidence 6899999999997520 01138999999999999999999999999988888999999
Q ss_pred HhcCCCCc
Q 036571 180 KNVGFYTW 187 (251)
Q Consensus 180 ~~~G~~~~ 187 (251)
+.+|++.-
T Consensus 59 ~~~g~~~~ 66 (257)
T TIGR01458 59 QRLGFDIS 66 (257)
T ss_pred HHcCCCCC
Confidence 99999753
No 90
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=98.88 E-value=7.6e-09 Score=92.35 Aligned_cols=67 Identities=19% Similarity=0.328 Sum_probs=57.9
Q ss_pred CcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHH
Q 036571 99 REIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENN 178 (251)
Q Consensus 99 ~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~ 178 (251)
.++|+|||||||+++ ..++||+.+++++|+++|++++++|||+...+....+.
T Consensus 2 ~~~~~~D~DGtl~~~---------------------------~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~ 54 (279)
T TIGR01452 2 AQGFIFDCDGVLWLG---------------------------ERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALK 54 (279)
T ss_pred ccEEEEeCCCceEcC---------------------------CeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHH
Confidence 579999999999875 45899999999999999999999999998888888899
Q ss_pred HHhcCCCCcceEEE
Q 036571 179 LKNVGFYTWENLIL 192 (251)
Q Consensus 179 L~~~G~~~~~~lil 192 (251)
|+++|+....+-++
T Consensus 55 l~~~G~~~~~~~i~ 68 (279)
T TIGR01452 55 FARLGFNGLAEQLF 68 (279)
T ss_pred HHHcCCCCChhhEe
Confidence 99999975433333
No 91
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.87 E-value=1.2e-08 Score=98.62 Aligned_cols=122 Identities=16% Similarity=0.095 Sum_probs=80.0
Q ss_pred CCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcc------
Q 036571 97 DGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPED------ 170 (251)
Q Consensus 97 ~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~------ 170 (251)
...+++.||+||||..+.... .| +.+++.|. .++||+.+.|+.|++.|++|+++||.+.-
T Consensus 166 ~~~Kia~fD~DGTLi~t~sg~---~~---~~~~~d~~--------~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~ 231 (526)
T TIGR01663 166 GQEKIAGFDLDGTIIKTKSGK---VF---PKGPDDWQ--------IIFPEIPEKLKELEADGFKICIFTNQGGIARGKIN 231 (526)
T ss_pred ccCcEEEEECCCCccccCCCc---cC---CCCHHHee--------ecccCHHHHHHHHHHCCCEEEEEECCcccccCccc
Confidence 456899999999999752100 01 12334442 26799999999999999999999998752
Q ss_pred ---cHHHHHHHHHhcCCCCcceEEEeCCC-CCCCccccchHHHHHHHH---hcCccEEEEEcCCccccccc
Q 036571 171 ---QRSVTENNLKNVGFYTWENLILKGSS-YSGETAVVYKSSERKRLE---KKGYRIIGNIGDQWSDLLGT 234 (251)
Q Consensus 171 ---~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~L~---~~g~~i~~~VGDq~sDi~ga 234 (251)
....+...|+.+|++ +.+++..+. ..+||.+..-....+.+. ......+++|||...|+.++
T Consensus 232 ~~~~~~ki~~iL~~lgip--fdviia~~~~~~RKP~pGm~~~a~~~~~~~~~Id~~~S~~VGDaagr~~~g 300 (526)
T TIGR01663 232 ADDFKAKIEAIVAKLGVP--FQVFIAIGAGFYRKPLTGMWDHLKEEANDGTEIQEDDCFFVGDAAGRPANG 300 (526)
T ss_pred HHHHHHHHHHHHHHcCCc--eEEEEeCCCCCCCCCCHHHHHHHHHhcCcccCCCHHHeEEeCCcccchHHH
Confidence 124567788899997 456666554 356775532111112221 01124589999999998764
No 92
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=98.86 E-value=6.7e-09 Score=92.36 Aligned_cols=99 Identities=21% Similarity=0.379 Sum_probs=73.6
Q ss_pred CCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHH
Q 036571 97 DGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTE 176 (251)
Q Consensus 97 ~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~ 176 (251)
+..++++||+||||... ..++||+.++++.|+++|.+++|+||++...++...
T Consensus 6 ~~y~~~l~DlDGvl~~G---------------------------~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~ 58 (269)
T COG0647 6 DKYDGFLFDLDGVLYRG---------------------------NEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVA 58 (269)
T ss_pred hhcCEEEEcCcCceEeC---------------------------CccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 45789999999999974 679999999999999999999999999999999899
Q ss_pred HHHHh-cCCCCcceEEEeCCC-------CCCCccccc---hHHHHHHHHhcCccEEE
Q 036571 177 NNLKN-VGFYTWENLILKGSS-------YSGETAVVY---KSSERKRLEKKGYRIIG 222 (251)
Q Consensus 177 ~~L~~-~G~~~~~~lilr~~~-------~~~kp~~~~---K~~~r~~L~~~g~~i~~ 222 (251)
+.|+. .|.+...+-|+.+.. ...++...| ....+..++..|+.++.
T Consensus 59 ~~L~~~~~~~~~~~~i~TS~~at~~~l~~~~~~~kv~viG~~~l~~~l~~~G~~~~~ 115 (269)
T COG0647 59 ARLSSLGGVDVTPDDIVTSGDATADYLAKQKPGKKVYVIGEEGLKEELEGAGFELVD 115 (269)
T ss_pred HHHHhhcCCCCCHHHeecHHHHHHHHHHhhCCCCEEEEECCcchHHHHHhCCcEEec
Confidence 99999 555443333443321 011111223 56777888888876533
No 93
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=98.86 E-value=3.7e-08 Score=89.94 Aligned_cols=99 Identities=21% Similarity=0.230 Sum_probs=63.2
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcce--EEE-----eC----CCCCCCccccchHH
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWEN--LIL-----KG----SSYSGETAVVYKSS 208 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~--lil-----r~----~~~~~kp~~~~K~~ 208 (251)
..++.||+.++++.|++.|++++++||.... .+...++++|+..... +-+ .+ +...++ .|..
T Consensus 179 ~l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~---~~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k----~K~~ 251 (322)
T PRK11133 179 NLPLMPGLTELVLKLQALGWKVAIASGGFTY---FADYLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQ----YKAD 251 (322)
T ss_pred hCCCChhHHHHHHHHHHcCCEEEEEECCcch---hHHHHHHHcCCCeEEEeEEEEECCEEEeEecCccCCcc----cHHH
Confidence 4789999999999999999999999999843 3445556678864221 111 11 111112 2443
Q ss_pred HHHHH-HhcC--ccEEEEEcCCccccccccccCcEEEeCCC
Q 036571 209 ERKRL-EKKG--YRIIGNIGDQWSDLLGTNAGNRTFKLPDP 246 (251)
Q Consensus 209 ~r~~L-~~~g--~~i~~~VGDq~sDi~ga~~g~r~f~lPnp 246 (251)
..+++ ++.| ...+++|||+.+|+..+......+.+ |+
T Consensus 252 ~L~~la~~lgi~~~qtIaVGDg~NDl~m~~~AGlgiA~-nA 291 (322)
T PRK11133 252 TLTRLAQEYEIPLAQTVAIGDGANDLPMIKAAGLGIAY-HA 291 (322)
T ss_pred HHHHHHHHcCCChhhEEEEECCHHHHHHHHHCCCeEEe-CC
Confidence 33333 3344 34689999999999987544455554 54
No 94
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=98.85 E-value=1.1e-08 Score=93.09 Aligned_cols=116 Identities=12% Similarity=0.067 Sum_probs=78.4
Q ss_pred CCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHH
Q 036571 98 GREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTEN 177 (251)
Q Consensus 98 ~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~ 177 (251)
.+|+||+|+|+||.... .|...- + .-.-..++|++.++|+.|+++|++++++|+++ +..+.+
T Consensus 2 ~~k~~v~DlDnTlw~gv-------~~e~g~--~------~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~---~~~a~~ 63 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGV-------LGEDGI--D------NLNLSPLHKTLQEKIKTLKKQGFLLALASKND---EDDAKK 63 (320)
T ss_pred CeEEEEEcCCCCCCCCE-------EccCCc--c------ccccCccHHHHHHHHHHHHhCCCEEEEEcCCC---HHHHHH
Confidence 36899999999999752 110000 0 00013578999999999999999999999998 567788
Q ss_pred HHHh----cCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCccEEEEEcCCccccccccc
Q 036571 178 NLKN----VGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRIIGNIGDQWSDLLGTNA 236 (251)
Q Consensus 178 ~L~~----~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i~~~VGDq~sDi~ga~~ 236 (251)
.|++ +|+..++..+.... ++|| ..-..+.+++ ..+...+++|||+..|+.++..
T Consensus 64 ~l~~~~~~~~~~~~f~~~~~~~--~pk~--~~i~~~~~~l-~i~~~~~vfidD~~~d~~~~~~ 121 (320)
T TIGR01686 64 VFERRKDFILQAEDFDARSINW--GPKS--ESLRKIAKKL-NLGTDSFLFIDDNPAERANVKI 121 (320)
T ss_pred HHHhCccccCcHHHeeEEEEec--CchH--HHHHHHHHHh-CCCcCcEEEECCCHHHHHHHHH
Confidence 8888 78876666554432 2332 2211222222 2346779999999999999854
No 95
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=98.76 E-value=3.8e-08 Score=86.60 Aligned_cols=66 Identities=15% Similarity=0.240 Sum_probs=56.4
Q ss_pred cEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHH
Q 036571 100 EIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNL 179 (251)
Q Consensus 100 ~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L 179 (251)
+.++||+||||++. ..++|++.+++++|+++|++++|+||++...++...+.|
T Consensus 2 ~~~~~D~DGtl~~~---------------------------~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l 54 (249)
T TIGR01457 2 KGYLIDLDGTMYKG---------------------------KERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEML 54 (249)
T ss_pred CEEEEeCCCceEcC---------------------------CeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH
Confidence 58999999999985 347889999999999999999999997777788899999
Q ss_pred HhcCCCCcceEEE
Q 036571 180 KNVGFYTWENLIL 192 (251)
Q Consensus 180 ~~~G~~~~~~lil 192 (251)
+++|++...+-++
T Consensus 55 ~~~g~~~~~~~ii 67 (249)
T TIGR01457 55 ASFDIPATLETVF 67 (249)
T ss_pred HHcCCCCChhhEe
Confidence 9999986433343
No 96
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.73 E-value=6.2e-08 Score=86.83 Aligned_cols=73 Identities=18% Similarity=0.239 Sum_probs=60.0
Q ss_pred CCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCC-chHHHHHHHHHHHCCCeEEEEeCCCcccHHHH
Q 036571 97 DGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPS-LPESLKLYKKLLSLGIKIVFLTGRPEDQRSVT 175 (251)
Q Consensus 97 ~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~-~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T 175 (251)
.-++.|+||+||||+.... .... -|++.++|++|+++|++++++||++ +...
T Consensus 126 ~~~~~i~~D~D~TL~~~~~------------------------~v~irdp~V~EtL~eLkekGikLaIvTNg~---Re~v 178 (303)
T PHA03398 126 EIPHVIVFDLDSTLITDEE------------------------PVRIRDPFVYDSLDELKERGCVLVLWSYGN---REHV 178 (303)
T ss_pred eeccEEEEecCCCccCCCC------------------------ccccCChhHHHHHHHHHHCCCEEEEEcCCC---hHHH
Confidence 4568999999999998621 2323 4999999999999999999999987 6677
Q ss_pred HHHHHhcCCCCcceEEEeCCC
Q 036571 176 ENNLKNVGFYTWENLILKGSS 196 (251)
Q Consensus 176 ~~~L~~~G~~~~~~lilr~~~ 196 (251)
...|+.+|+..+++.++.+..
T Consensus 179 ~~~Le~lgL~~yFDvII~~g~ 199 (303)
T PHA03398 179 VHSLKETKLEGYFDIIICGGR 199 (303)
T ss_pred HHHHHHcCCCccccEEEECCC
Confidence 889999999988877766544
No 97
>PRK11590 hypothetical protein; Provisional
Probab=98.70 E-value=2.8e-07 Score=78.96 Aligned_cols=103 Identities=20% Similarity=0.213 Sum_probs=64.1
Q ss_pred CCCchHHHHHH-HHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCC--CCCC--ccccchHHHHHHHHh
Q 036571 141 APSLPESLKLY-KKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSS--YSGE--TAVVYKSSERKRLEK 215 (251)
Q Consensus 141 ~~~~pga~ell-~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~--~~~k--p~~~~K~~~r~~L~~ 215 (251)
..++||+.+++ +.++++|++++++||++ +..+...+..+|+..-++++-..-. ..++ ....+.+++...|++
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~---~~~~~~il~~l~~~~~~~~i~t~l~~~~tg~~~g~~c~g~~K~~~l~~ 170 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSP---QPLVEQVYFDTPWLPRVNLIASQMQRRYGGWVLTLRCLGHEKVAQLER 170 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCc---HHHHHHHHHHccccccCceEEEEEEEEEccEECCccCCChHHHHHHHH
Confidence 56799999999 57888999999999999 5677778888885222333322211 1122 111233344444432
Q ss_pred ---cCccEEEEEcCCcccccccc-ccCcEEEeCCC
Q 036571 216 ---KGYRIIGNIGDQWSDLLGTN-AGNRTFKLPDP 246 (251)
Q Consensus 216 ---~g~~i~~~VGDq~sDi~ga~-~g~r~f~lPnp 246 (251)
.........||+.+|+.=-. ++..+..=|+|
T Consensus 171 ~~~~~~~~~~aY~Ds~~D~pmL~~a~~~~~vnp~~ 205 (211)
T PRK11590 171 KIGTPLRLYSGYSDSKQDNPLLYFCQHRWRVTPRG 205 (211)
T ss_pred HhCCCcceEEEecCCcccHHHHHhCCCCEEECccH
Confidence 23455678999999997543 34455555665
No 98
>PRK08238 hypothetical protein; Validated
Probab=98.69 E-value=1.6e-07 Score=90.11 Aligned_cols=133 Identities=16% Similarity=0.148 Sum_probs=80.0
Q ss_pred CCCcEEEEecCCCccCChhhHhhhc--CCCCCC-----------ChHHHHHHHh------cCCCCCchHHHHHHHHHHHC
Q 036571 97 DGREIWIFDIDETSLSNLPYYAKHG--FGVEPF-----------NSTLFNEWVN------KGEAPSLPESLKLYKKLLSL 157 (251)
Q Consensus 97 ~~~~avvfDIDgTlldn~~~~~~~~--~~~~~~-----------~~~~~~~wv~------~~~~~~~pga~ell~~L~~~ 157 (251)
......+||+||||+.+.-...... ....++ ......+.+. ....+..|++.+++++++++
T Consensus 8 ~~~~pl~~DlDgTLi~td~l~e~~~~~l~~~p~~~~~l~~~~~~g~a~lK~~~a~~~~~d~~~lp~~pga~e~L~~lk~~ 87 (479)
T PRK08238 8 SRDLPLVVDLDGTLIRTDLLHESIFALLRRNPLALLRLPLWLLRGKAALKRRLARRVDLDVATLPYNEEVLDYLRAERAA 87 (479)
T ss_pred CCCCCEEEeCCCCccccchHHHHHHHHHHhChHHHHHHHHHHHhcHHHHHHHHHhhcCCChhhCCCChhHHHHHHHHHHC
Confidence 3456899999999998754332210 011110 0011111111 12345679999999999999
Q ss_pred CCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCC-CCCCccccchHHH-HHHHHhcCccEEEEEcCCcccccccc
Q 036571 158 GIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSS-YSGETAVVYKSSE-RKRLEKKGYRIIGNIGDQWSDLLGTN 235 (251)
Q Consensus 158 G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~-r~~L~~~g~~i~~~VGDq~sDi~ga~ 235 (251)
|++++++|+++ +..+...++++|+ ++.++..++ ...|+. .|... ++.+ +-+-+.++||+.+|+....
T Consensus 88 G~~v~LaTas~---~~~a~~i~~~lGl---Fd~Vigsd~~~~~kg~--~K~~~l~~~l---~~~~~~yvGDS~~Dlp~~~ 156 (479)
T PRK08238 88 GRKLVLATASD---ERLAQAVAAHLGL---FDGVFASDGTTNLKGA--AKAAALVEAF---GERGFDYAGNSAADLPVWA 156 (479)
T ss_pred CCEEEEEeCCC---HHHHHHHHHHcCC---CCEEEeCCCccccCCc--hHHHHHHHHh---CccCeeEecCCHHHHHHHH
Confidence 99999999999 5566777788887 344555544 333332 23322 2222 2233578999999999875
Q ss_pred ccCcE
Q 036571 236 AGNRT 240 (251)
Q Consensus 236 ~g~r~ 240 (251)
...+.
T Consensus 157 ~A~~a 161 (479)
T PRK08238 157 AARRA 161 (479)
T ss_pred hCCCe
Confidence 43333
No 99
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.65 E-value=3.7e-07 Score=76.86 Aligned_cols=140 Identities=20% Similarity=0.262 Sum_probs=87.8
Q ss_pred CCcEEEEecCCCccCChhhH--hh-hc------------CCC-CCCC-------------hHHHHHHHhcCCCCCchHHH
Q 036571 98 GREIWIFDIDETSLSNLPYY--AK-HG------------FGV-EPFN-------------STLFNEWVNKGEAPSLPESL 148 (251)
Q Consensus 98 ~~~avvfDIDgTlldn~~~~--~~-~~------------~~~-~~~~-------------~~~~~~wv~~~~~~~~pga~ 148 (251)
..++|+||+|-||+.-+... +. .+ .++ .+|. ...-..++...+...-||+.
T Consensus 15 ~~~aVcFDvDSTvi~eEgIdelA~~~G~~~~Va~~T~rAMng~~~F~eaL~~Rl~llqp~~~qv~~~v~~~k~~lT~Gi~ 94 (227)
T KOG1615|consen 15 SADAVCFDVDSTVIQEEGIDELAAYCGVGEAVAEVTRRAMNGEADFQEALAARLSLLQPLQVQVEQFVIKQKPTLTPGIR 94 (227)
T ss_pred hcCeEEEecCcchhHHhhHHHHHHHhCchHHHHHHHHHHhCCCCcHHHHHHHHHHHhcccHHHHHHHHhcCCCccCCCHH
Confidence 35799999999999753321 11 01 121 2231 23445555566778899999
Q ss_pred HHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCC---cceEE-EeCCCC-----CCCc--cccchHHHHHHHHh-c
Q 036571 149 KLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYT---WENLI-LKGSSY-----SGET--AVVYKSSERKRLEK-K 216 (251)
Q Consensus 149 ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~---~~~li-lr~~~~-----~~kp--~~~~K~~~r~~L~~-~ 216 (251)
+|.+.|+++|.+++++||.- |....---..+|++. |...+ +..++. ...| +.--|++....+.+ .
T Consensus 95 eLv~~L~~~~~~v~liSGGF---~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~i~~lrk~~ 171 (227)
T KOG1615|consen 95 ELVSRLHARGTQVYLISGGF---RQLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAEVIALLRKNY 171 (227)
T ss_pred HHHHHHHHcCCeEEEEcCCh---HHHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCCccHHHHHHHHhCC
Confidence 99999999999999999987 444444445568875 22222 222211 1112 11247666666654 2
Q ss_pred CccEEEEEcCCccccccccccCcE
Q 036571 217 GYRIIGNIGDQWSDLLGTNAGNRT 240 (251)
Q Consensus 217 g~~i~~~VGDq~sDi~ga~~g~r~ 240 (251)
.|..+++|||.-+|+.+.+-|.-+
T Consensus 172 ~~~~~~mvGDGatDlea~~pa~af 195 (227)
T KOG1615|consen 172 NYKTIVMVGDGATDLEAMPPADAF 195 (227)
T ss_pred ChheeEEecCCccccccCCchhhh
Confidence 345789999999999987544433
No 100
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=98.65 E-value=2.6e-07 Score=76.76 Aligned_cols=118 Identities=21% Similarity=0.220 Sum_probs=76.0
Q ss_pred cCCCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCe--EEEEeCCCcccH
Q 036571 95 AGDGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIK--IVFLTGRPEDQR 172 (251)
Q Consensus 95 ~~~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~--I~~vTnR~e~~r 172 (251)
...|.+++|||.|.||..-. ....-|...+.++++++.+.. |+++||+.....
T Consensus 37 k~~Gik~li~DkDNTL~~~~-------------------------~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~ 91 (168)
T PF09419_consen 37 KKKGIKALIFDKDNTLTPPY-------------------------EDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSD 91 (168)
T ss_pred hhcCceEEEEcCCCCCCCCC-------------------------cCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCccc
Confidence 45789999999999998631 356778899999999999875 999999852211
Q ss_pred ---HHHHHHH-HhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhc----CccEEEEEcCCc-ccccccc-ccCcEEE
Q 036571 173 ---SVTENNL-KNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKK----GYRIIGNIGDQW-SDLLGTN-AGNRTFK 242 (251)
Q Consensus 173 ---~~T~~~L-~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~----g~~i~~~VGDq~-sDi~ga~-~g~r~f~ 242 (251)
..-.+.+ +.+|++. +... ..||. -.....+.+... ....+++||||. +|+.+|+ .|..++.
T Consensus 92 d~~~~~a~~~~~~lgIpv----l~h~---~kKP~--~~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~~G~~til 162 (168)
T PF09419_consen 92 DPDGERAEALEKALGIPV----LRHR---AKKPG--CFREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTIL 162 (168)
T ss_pred CccHHHHHHHHHhhCCcE----EEeC---CCCCc--cHHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhccCceEEE
Confidence 1122333 4468763 1111 23441 112233333322 255789999999 9999996 4667766
Q ss_pred eCCC
Q 036571 243 LPDP 246 (251)
Q Consensus 243 lPnp 246 (251)
+-++
T Consensus 163 v~~g 166 (168)
T PF09419_consen 163 VTDG 166 (168)
T ss_pred EecC
Confidence 6544
No 101
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=98.64 E-value=1.1e-07 Score=80.31 Aligned_cols=126 Identities=25% Similarity=0.368 Sum_probs=76.0
Q ss_pred EEEecCCCccCChhhHhh---hcCCCC------CCC----hHHH--------HH----HHhc---CCCCCchHHHHHHHH
Q 036571 102 WIFDIDETSLSNLPYYAK---HGFGVE------PFN----STLF--------NE----WVNK---GEAPSLPESLKLYKK 153 (251)
Q Consensus 102 vvfDIDgTlldn~~~~~~---~~~~~~------~~~----~~~~--------~~----wv~~---~~~~~~pga~ell~~ 153 (251)
|.+||||||.|....+.. ..|+.. .+. .+.| .+ +... ...+|+||+.+.++.
T Consensus 5 I~iDiDgVLad~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~~~~~~~~~f~~l~p~~gA~e~l~~ 84 (191)
T PF06941_consen 5 IAIDIDGVLADFNSAFIEWFNEEFGKNPELTPEDITGYWDWEKWGITEPEFYEKLWRFYEEPGFFSNLPPIPGAVEALKK 84 (191)
T ss_dssp EEEESBTTTB-HHHHHHHHHHHHTTTS----GGGGTSSSHHHHHHHHSTTHHHHHHHHHTSTTTTTT--B-TTHHHHHHH
T ss_pred EEEECCCCCcccHHHHHHHHHHHcCCCCCCCHHHhhhhhHHHHhCCCCHHHHHHHHHHHhChhhhcCCCccHHHHHHHHH
Confidence 899999999998664433 233332 111 1112 11 1111 357999999999999
Q ss_pred HHHCCCeEEEEeCCCcc----cHHHHHHHHHhc-CCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCccEEEEEcCCc
Q 036571 154 LLSLGIKIVFLTGRPED----QRSVTENNLKNV-GFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRIIGNIGDQW 228 (251)
Q Consensus 154 L~~~G~~I~~vTnR~e~----~r~~T~~~L~~~-G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i~~~VGDq~ 228 (251)
|.+.|+.+++||+|+.. ..+.|.+||+++ |...+..+++.++ |.. + +.. ++|+|++
T Consensus 85 L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~~~~~~~~~~----------K~~----v---~~D--vlIDD~~ 145 (191)
T PF06941_consen 85 LRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIPYDNLIFTGD----------KTL----V---GGD--VLIDDRP 145 (191)
T ss_dssp HHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHHHCCEEEESS----------GGG----C-----S--EEEESSS
T ss_pred HHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCchheEEEecC----------CCe----E---ecc--EEecCCh
Confidence 99999999999999865 578999999997 3323467777643 111 1 123 6799988
Q ss_pred cccccc-cccCcEEEeCCC
Q 036571 229 SDLLGT-NAGNRTFKLPDP 246 (251)
Q Consensus 229 sDi~ga-~~g~r~f~lPnp 246 (251)
.-+... ..|..++.+..|
T Consensus 146 ~n~~~~~~~g~~~iLfd~p 164 (191)
T PF06941_consen 146 HNLEQFANAGIPVILFDQP 164 (191)
T ss_dssp HHHSS-SSESSEEEEE--G
T ss_pred HHHHhccCCCceEEEEcCC
Confidence 555443 456677777654
No 102
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.64 E-value=4.4e-07 Score=78.20 Aligned_cols=101 Identities=20% Similarity=0.141 Sum_probs=65.4
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceE-EEeCCC-CCCCc-----cccchHHHHHHH
Q 036571 141 APSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENL-ILKGSS-YSGET-----AVVYKSSERKRL 213 (251)
Q Consensus 141 ~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~l-ilr~~~-~~~kp-----~~~~K~~~r~~L 213 (251)
.+..||+.++++.++++|++++++|+..+ ..+..-.+.+|+...... +...++ ..++- ....|.....++
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~---~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~ 152 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFT---FLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALREL 152 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChH---HHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHH
Confidence 78899999999999999999999999984 455566677899875422 222222 11111 112355444444
Q ss_pred -HhcCcc--EEEEEcCCccccccc-cccCcEEEeC
Q 036571 214 -EKKGYR--IIGNIGDQWSDLLGT-NAGNRTFKLP 244 (251)
Q Consensus 214 -~~~g~~--i~~~VGDq~sDi~ga-~~g~r~f~lP 244 (251)
.+.|.. .+..+||+.+|+.=- .+|.++..=|
T Consensus 153 ~~~~g~~~~~~~a~gDs~nDlpml~~ag~~ia~n~ 187 (212)
T COG0560 153 AAELGIPLEETVAYGDSANDLPMLEAAGLPIAVNP 187 (212)
T ss_pred HHHcCCCHHHeEEEcCchhhHHHHHhCCCCeEeCc
Confidence 345665 789999999998653 2344443333
No 103
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=98.62 E-value=6.5e-07 Score=78.22 Aligned_cols=131 Identities=18% Similarity=0.238 Sum_probs=84.8
Q ss_pred EEEEecCCCccCC-hhhHhhhcCCCCC--------CChHHHHHHHhc-------------------CCCCCchHHHHHHH
Q 036571 101 IWIFDIDETSLSN-LPYYAKHGFGVEP--------FNSTLFNEWVNK-------------------GEAPSLPESLKLYK 152 (251)
Q Consensus 101 avvfDIDgTlldn-~~~~~~~~~~~~~--------~~~~~~~~wv~~-------------------~~~~~~pga~ell~ 152 (251)
.+|||.|+||++- +..+.-..++.+. +....|.+++.. ...|.-||+.++++
T Consensus 2 LvvfDFD~TIvd~dsd~~v~~~l~~~~~~~~l~~~~~~~~wt~~m~~vl~~L~~~gvt~~~I~~~l~~ip~~pgm~~~l~ 81 (234)
T PF06888_consen 2 LVVFDFDHTIVDQDSDDWVIELLPPEELPEELRESYPKGGWTEYMDRVLQLLHEQGVTPEDIRDALRSIPIDPGMKELLR 81 (234)
T ss_pred EEEEeCCCCccCCccHHHHHHhcCCcccHHHHHHhccccchHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCccHHHHHH
Confidence 4899999999973 3333333333221 111234443332 45789999999999
Q ss_pred HH--HHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeC--------------CCCC---CCccccchHHHHHHH
Q 036571 153 KL--LSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKG--------------SSYS---GETAVVYKSSERKRL 213 (251)
Q Consensus 153 ~L--~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~--------------~~~~---~kp~~~~K~~~r~~L 213 (251)
.+ ++.|+.++++|.-. .-....+|+++|+...+.-|.+. -..+ ..|.-.-|.....++
T Consensus 82 ~l~~~~~~~~~~IiSDaN---s~fI~~iL~~~gl~~~f~~I~TNpa~~~~~G~l~v~pyh~h~C~~C~~NmCK~~il~~~ 158 (234)
T PF06888_consen 82 FLAKNQRGFDLIIISDAN---SFFIETILEHHGLRDCFSEIFTNPACFDADGRLRVRPYHSHGCSLCPPNMCKGKILERL 158 (234)
T ss_pred HHHhcCCCceEEEEeCCc---HhHHHHHHHhCCCccccceEEeCCceecCCceEEEeCccCCCCCcCCCccchHHHHHHH
Confidence 99 45899999999987 44778899999998654323322 1111 122112365555555
Q ss_pred Hhc----C--ccEEEEEcCCccccccc
Q 036571 214 EKK----G--YRIIGNIGDQWSDLLGT 234 (251)
Q Consensus 214 ~~~----g--~~i~~~VGDq~sDi~ga 234 (251)
.+. | |+-++||||.-+|+=.+
T Consensus 159 ~~~~~~~g~~~~rviYiGDG~nD~Cp~ 185 (234)
T PF06888_consen 159 LQEQAQRGVPYDRVIYIGDGRNDFCPA 185 (234)
T ss_pred HHHHhhcCCCcceEEEECCCCCCcCcc
Confidence 443 4 78899999999999776
No 104
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=98.62 E-value=5.8e-08 Score=79.00 Aligned_cols=110 Identities=25% Similarity=0.354 Sum_probs=72.0
Q ss_pred CCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHH
Q 036571 97 DGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTE 176 (251)
Q Consensus 97 ~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~ 176 (251)
...+-+|||+||||.|..-||..++-.-+.|+. ..| --++.|.+.|++++++|||. -...+
T Consensus 6 ~~IkLli~DVDGvLTDG~ly~~~~Gee~KaFnv--------------~DG--~Gik~l~~~Gi~vAIITGr~---s~ive 66 (170)
T COG1778 6 KNIKLLILDVDGVLTDGKLYYDENGEEIKAFNV--------------RDG--HGIKLLLKSGIKVAIITGRD---SPIVE 66 (170)
T ss_pred hhceEEEEeccceeecCeEEEcCCCceeeeeec--------------cCc--HHHHHHHHcCCeEEEEeCCC---CHHHH
Confidence 356789999999999998777654422223331 111 12567889999999999999 44777
Q ss_pred HHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCccEEEEEcCCccccccc
Q 036571 177 NNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRIIGNIGDQWSDLLGT 234 (251)
Q Consensus 177 ~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i~~~VGDq~sDi~ga 234 (251)
+..+.+|+.. ++....+ +. ..|+ ++++++ ..++..+++|||.++|+..-
T Consensus 67 ~Ra~~LGI~~---~~qG~~d-K~---~a~~-~L~~~~-~l~~e~~ayiGDD~~Dlpvm 115 (170)
T COG1778 67 KRAKDLGIKH---LYQGISD-KL---AAFE-ELLKKL-NLDPEEVAYVGDDLVDLPVM 115 (170)
T ss_pred HHHHHcCCce---eeechHh-HH---HHHH-HHHHHh-CCCHHHhhhhcCccccHHHH
Confidence 8888999964 3433222 10 1121 223333 24567899999999999654
No 105
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=98.60 E-value=1.8e-07 Score=81.56 Aligned_cols=104 Identities=16% Similarity=0.100 Sum_probs=75.1
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcce-EEEeCCCCCCCccccchHHHHHHHHhcCcc
Q 036571 141 APSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWEN-LILKGSSYSGETAVVYKSSERKRLEKKGYR 219 (251)
Q Consensus 141 ~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~-lilr~~~~~~kp~~~~K~~~r~~L~~~g~~ 219 (251)
-...+++.++++.|+++|..+.++||-+...+ .-|...|+..+++ ++.+......||++....-..+.+. ....
T Consensus 112 ~~~~~~~~~~lq~lR~~g~~l~iisN~d~r~~----~~l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~al~~l~-v~Pe 186 (237)
T KOG3085|consen 112 WKYLDGMQELLQKLRKKGTILGIISNFDDRLR----LLLLPLGLSAYFDFVVESCEVGLEKPDPRIFQLALERLG-VKPE 186 (237)
T ss_pred ceeccHHHHHHHHHHhCCeEEEEecCCcHHHH----HHhhccCHHHhhhhhhhhhhhccCCCChHHHHHHHHHhC-CChH
Confidence 35678999999999999999999999885433 5667778876655 4445444567888853222222222 1256
Q ss_pred EEEEEcCCc-cccccc-cccCcEEEeCCCCCC
Q 036571 220 IIGNIGDQW-SDLLGT-NAGNRTFKLPDPMYY 249 (251)
Q Consensus 220 i~~~VGDq~-sDi~ga-~~g~r~f~lPnp~y~ 249 (251)
.++.|||.. +|++|| +.|.+.+.+-|.++-
T Consensus 187 e~vhIgD~l~nD~~gA~~~G~~ailv~~~~~~ 218 (237)
T KOG3085|consen 187 ECVHIGDLLENDYEGARNLGWHAILVDNSITA 218 (237)
T ss_pred HeEEecCccccccHhHHHcCCEEEEEccccch
Confidence 799999999 999999 579999888777653
No 106
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=98.59 E-value=5.2e-07 Score=75.76 Aligned_cols=122 Identities=17% Similarity=0.186 Sum_probs=81.9
Q ss_pred CcEEEEecCCCccCChh-hHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCc--------
Q 036571 99 REIWIFDIDETSLSNLP-YYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPE-------- 169 (251)
Q Consensus 99 ~~avvfDIDgTlldn~~-~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e-------- 169 (251)
.++++||-||||..-.+ |. ..+++ -...|++.+.+..|++.|++++++||-+-
T Consensus 5 ~k~lflDRDGtin~d~~~yv------------~~~~~------~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~ 66 (181)
T COG0241 5 QKALFLDRDGTINIDKGDYV------------DSLDD------FQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTE 66 (181)
T ss_pred CcEEEEcCCCceecCCCccc------------CcHHH------hccCccHHHHHHHHHhCCCeEEEEECCCCccccCccH
Confidence 68999999999986433 21 11222 35889999999999999999999999652
Q ss_pred ----ccHHHHHHHHHhcCCCCcceEEEeCCCC-----CCCccccchHHHHHH-HHhcC--ccEEEEEcCCccccccc-cc
Q 036571 170 ----DQRSVTENNLKNVGFYTWENLILKGSSY-----SGETAVVYKSSERKR-LEKKG--YRIIGNIGDQWSDLLGT-NA 236 (251)
Q Consensus 170 ----~~r~~T~~~L~~~G~~~~~~lilr~~~~-----~~kp~~~~K~~~r~~-L~~~g--~~i~~~VGDq~sDi~ga-~~ 236 (251)
...+...+.|+..|... +.++..+..+ -+||.+ ..... +++.+ .....+|||..+|+++| ++
T Consensus 67 ~~f~~~~~~m~~~l~~~gv~i-d~i~~Cph~p~~~c~cRKP~~----gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~ 141 (181)
T COG0241 67 ADFDKLHNKMLKILASQGVKI-DGILYCPHHPEDNCDCRKPKP----GMLLSALKEYNIDLSRSYVVGDRLTDLQAAENA 141 (181)
T ss_pred HHHHHHHHHHHHHHHHcCCcc-ceEEECCCCCCCCCcccCCCh----HHHHHHHHHhCCCccceEEecCcHHHHHHHHHC
Confidence 12344567788889754 5666666532 255533 22222 22222 24578999999999998 45
Q ss_pred cCcEEEe
Q 036571 237 GNRTFKL 243 (251)
Q Consensus 237 g~r~f~l 243 (251)
|.+.+.+
T Consensus 142 gi~~~~~ 148 (181)
T COG0241 142 GIKGVLV 148 (181)
T ss_pred CCCceEE
Confidence 6665544
No 107
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=98.53 E-value=5.1e-07 Score=78.25 Aligned_cols=109 Identities=14% Similarity=0.114 Sum_probs=69.7
Q ss_pred HHHHHHhcC--CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhc---CCCCcceEEEeCCCCCCCccccc
Q 036571 131 LFNEWVNKG--EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNV---GFYTWENLILKGSSYSGETAVVY 205 (251)
Q Consensus 131 ~~~~wv~~~--~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~---G~~~~~~lilr~~~~~~kp~~~~ 205 (251)
.|.+....+ ..+++|++.++|+.|+++|++++++||.+ +......+... ++..++..++.. ....||.+..
T Consensus 82 iw~~~Y~~~~~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s---~~~~~~~~~~~~~~~L~~~f~~~fd~-~~g~KP~p~~ 157 (220)
T TIGR01691 82 IWRQGYESGELTSHLYPDVPPALEAWLQLGLRLAVYSSGS---VPAQKLLFGHSDAGNLTPYFSGYFDT-TVGLKTEAQS 157 (220)
T ss_pred HHHHHHhcCCcccCcCcCHHHHHHHHHHCCCEEEEEeCCC---HHHHHHHHhhccccchhhhcceEEEe-CcccCCCHHH
Confidence 355554443 35799999999999999999999999998 44444445443 444433333321 1235665542
Q ss_pred hHHHHHHHHhcCccEEEEEcCCccccccc-cccCcEEEeC
Q 036571 206 KSSERKRLEKKGYRIIGNIGDQWSDLLGT-NAGNRTFKLP 244 (251)
Q Consensus 206 K~~~r~~L~~~g~~i~~~VGDq~sDi~ga-~~g~r~f~lP 244 (251)
-....+++. .....+++|||+..|+.+| .+|.+++.+.
T Consensus 158 y~~i~~~lg-v~p~e~lfVgDs~~Di~AA~~AG~~ti~v~ 196 (220)
T TIGR01691 158 YVKIAGQLG-SPPREILFLSDIINELDAARKAGLHTGQLV 196 (220)
T ss_pred HHHHHHHhC-cChhHEEEEeCCHHHHHHHHHcCCEEEEEE
Confidence 222222221 1134589999999999999 5688877663
No 108
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=98.48 E-value=4.7e-07 Score=77.78 Aligned_cols=59 Identities=20% Similarity=0.188 Sum_probs=46.5
Q ss_pred CcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHH
Q 036571 99 REIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENN 178 (251)
Q Consensus 99 ~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~ 178 (251)
++.++|||||||++.. ...-|.+.+.+++|+++|++++++|||+. ......
T Consensus 3 ~kli~~DlDGTLl~~~--------------------------~~i~~~~~~al~~l~~~G~~~~iaTGR~~---~~~~~~ 53 (230)
T PRK01158 3 IKAIAIDIDGTITDKD--------------------------RRLSLKAVEAIRKAEKLGIPVILATGNVL---CFARAA 53 (230)
T ss_pred eeEEEEecCCCcCCCC--------------------------CccCHHHHHHHHHHHHCCCEEEEEcCCch---HHHHHH
Confidence 4789999999999752 23457889999999999999999999994 344455
Q ss_pred HHhcCCCC
Q 036571 179 LKNVGFYT 186 (251)
Q Consensus 179 L~~~G~~~ 186 (251)
++.+|++.
T Consensus 54 ~~~l~~~~ 61 (230)
T PRK01158 54 AKLIGTSG 61 (230)
T ss_pred HHHhCCCC
Confidence 56677764
No 109
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=98.48 E-value=5e-07 Score=79.95 Aligned_cols=59 Identities=22% Similarity=0.209 Sum_probs=49.3
Q ss_pred CcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHH
Q 036571 99 REIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENN 178 (251)
Q Consensus 99 ~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~ 178 (251)
++.++|||||||+++. ...-+..++.+++|+++|++++++|||+ .....+.
T Consensus 2 ~kli~~DlDGTLl~~~--------------------------~~i~~~~~~ai~~l~~~G~~~~iaTGR~---~~~~~~~ 52 (272)
T PRK15126 2 ARLAAFDMDGTLLMPD--------------------------HHLGEKTLSTLARLRERDITLTFATGRH---VLEMQHI 52 (272)
T ss_pred ccEEEEeCCCcCcCCC--------------------------CcCCHHHHHHHHHHHHCCCEEEEECCCC---HHHHHHH
Confidence 4689999999999851 3466778999999999999999999999 5566777
Q ss_pred HHhcCCCC
Q 036571 179 LKNVGFYT 186 (251)
Q Consensus 179 L~~~G~~~ 186 (251)
++.+|+..
T Consensus 53 ~~~l~~~~ 60 (272)
T PRK15126 53 LGALSLDA 60 (272)
T ss_pred HHHcCCCC
Confidence 78888864
No 110
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=98.48 E-value=4.7e-07 Score=79.61 Aligned_cols=59 Identities=25% Similarity=0.363 Sum_probs=48.2
Q ss_pred CcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHH
Q 036571 99 REIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENN 178 (251)
Q Consensus 99 ~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~ 178 (251)
++.++|||||||+++. ....|...+.+++|+++|+.++++|||+ ...+...
T Consensus 3 ~kli~~DlDGTLl~~~--------------------------~~i~~~~~~ai~~~~~~G~~~~iaTGR~---~~~~~~~ 53 (272)
T PRK10530 3 YRVIALDLDGTLLTPK--------------------------KTILPESLEALARAREAGYKVIIVTGRH---HVAIHPF 53 (272)
T ss_pred ccEEEEeCCCceECCC--------------------------CccCHHHHHHHHHHHHCCCEEEEEcCCC---hHHHHHH
Confidence 5789999999999852 2456678999999999999999999999 4455667
Q ss_pred HHhcCCCC
Q 036571 179 LKNVGFYT 186 (251)
Q Consensus 179 L~~~G~~~ 186 (251)
++.+|+..
T Consensus 54 ~~~l~~~~ 61 (272)
T PRK10530 54 YQALALDT 61 (272)
T ss_pred HHhcCCCC
Confidence 77778764
No 111
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=98.47 E-value=3.1e-07 Score=80.16 Aligned_cols=64 Identities=22% Similarity=0.372 Sum_probs=54.8
Q ss_pred EEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHh
Q 036571 102 WIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKN 181 (251)
Q Consensus 102 vvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~ 181 (251)
++||+||||+++ ..++|++.+.++.|+++|+++.|+||.+...+....+.|.+
T Consensus 1 ~lfD~DGvL~~~---------------------------~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~ 53 (236)
T TIGR01460 1 FLFDIDGVLWLG---------------------------HKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSS 53 (236)
T ss_pred CEEeCcCccCcC---------------------------CccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 589999999986 45689999999999999999999999988889999999999
Q ss_pred -cCCCCcceEEE
Q 036571 182 -VGFYTWENLIL 192 (251)
Q Consensus 182 -~G~~~~~~lil 192 (251)
.|++...+-++
T Consensus 54 ~~g~~~~~~~ii 65 (236)
T TIGR01460 54 LLGVDVSPDQII 65 (236)
T ss_pred hcCCCCCHHHee
Confidence 78875433333
No 112
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=98.47 E-value=7.8e-07 Score=78.38 Aligned_cols=58 Identities=22% Similarity=0.258 Sum_probs=47.4
Q ss_pred CcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHH
Q 036571 99 REIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENN 178 (251)
Q Consensus 99 ~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~ 178 (251)
++.|+|||||||+++. ...-|...+.+++|+++|++++++|||+ ...+...
T Consensus 3 ~kli~~DlDGTLl~~~--------------------------~~i~~~~~~ai~~l~~~G~~~~iaTGR~---~~~~~~~ 53 (270)
T PRK10513 3 IKLIAIDMDGTLLLPD--------------------------HTISPAVKQAIAAARAKGVNVVLTTGRP---YAGVHRY 53 (270)
T ss_pred eEEEEEecCCcCcCCC--------------------------CccCHHHHHHHHHHHHCCCEEEEecCCC---hHHHHHH
Confidence 5789999999999852 2355778999999999999999999999 4455666
Q ss_pred HHhcCCC
Q 036571 179 LKNVGFY 185 (251)
Q Consensus 179 L~~~G~~ 185 (251)
++.+|+.
T Consensus 54 ~~~l~~~ 60 (270)
T PRK10513 54 LKELHME 60 (270)
T ss_pred HHHhCCC
Confidence 7777875
No 113
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=98.47 E-value=6.4e-07 Score=76.24 Aligned_cols=101 Identities=20% Similarity=0.298 Sum_probs=83.6
Q ss_pred CCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHH
Q 036571 97 DGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTE 176 (251)
Q Consensus 97 ~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~ 176 (251)
.+.+++++||-|||... ..++||+.|.++.|+.++.+|-|+||.+.+.+....
T Consensus 5 ~~v~gvLlDlSGtLh~e---------------------------~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~ 57 (262)
T KOG3040|consen 5 RAVKGVLLDLSGTLHIE---------------------------DAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLH 57 (262)
T ss_pred cccceEEEeccceEecc---------------------------cccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHH
Confidence 35689999999999875 459999999999999999999999999998899999
Q ss_pred HHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCccEEEEEcCCc-ccccccc
Q 036571 177 NNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRIIGNIGDQW-SDLLGTN 235 (251)
Q Consensus 177 ~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i~~~VGDq~-sDi~ga~ 235 (251)
+.|.++||..-++-+..+. ...+.-+++.++++.+.|.|.. .||.|-.
T Consensus 58 ~rL~rlgf~v~eeei~tsl-----------~aa~~~~~~~~lrP~l~v~d~a~~dF~gid 106 (262)
T KOG3040|consen 58 ERLQRLGFDVSEEEIFTSL-----------PAARQYLEENQLRPYLIVDDDALEDFDGID 106 (262)
T ss_pred HHHHHhCCCccHHHhcCcc-----------HHHHHHHHhcCCCceEEEcccchhhCCCcc
Confidence 9999999986443343332 3567778888899988888877 8888763
No 114
>PRK10976 putative hydrolase; Provisional
Probab=98.46 E-value=5.3e-07 Score=79.35 Aligned_cols=59 Identities=27% Similarity=0.244 Sum_probs=47.9
Q ss_pred CcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHH
Q 036571 99 REIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENN 178 (251)
Q Consensus 99 ~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~ 178 (251)
++.+++||||||+++. ...-|...+.+++|+++|++++++|||+ .......
T Consensus 2 ikli~~DlDGTLl~~~--------------------------~~is~~~~~ai~~l~~~G~~~~iaTGR~---~~~~~~~ 52 (266)
T PRK10976 2 YQVVASDLDGTLLSPD--------------------------HTLSPYAKETLKLLTARGIHFVFATGRH---HVDVGQI 52 (266)
T ss_pred ceEEEEeCCCCCcCCC--------------------------CcCCHHHHHHHHHHHHCCCEEEEEcCCC---hHHHHHH
Confidence 4789999999999852 2355778999999999999999999999 4455666
Q ss_pred HHhcCCCC
Q 036571 179 LKNVGFYT 186 (251)
Q Consensus 179 L~~~G~~~ 186 (251)
++.+|+..
T Consensus 53 ~~~l~~~~ 60 (266)
T PRK10976 53 RDNLEIKS 60 (266)
T ss_pred HHhcCCCC
Confidence 77778764
No 115
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.46 E-value=5.4e-07 Score=80.03 Aligned_cols=60 Identities=22% Similarity=0.176 Sum_probs=50.0
Q ss_pred CcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHH
Q 036571 99 REIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENN 178 (251)
Q Consensus 99 ~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~ 178 (251)
++.+++||||||+++. ....+.+.++++.|+++|++++++|||+ .......
T Consensus 4 ~kli~~DlDGTLl~~~--------------------------~~~~~~~~~ai~~l~~~Gi~~~iaTgR~---~~~~~~~ 54 (273)
T PRK00192 4 KLLVFTDLDGTLLDHH--------------------------TYSYEPAKPALKALKEKGIPVIPCTSKT---AAEVEVL 54 (273)
T ss_pred ceEEEEcCcccCcCCC--------------------------CcCcHHHHHHHHHHHHCCCEEEEEcCCC---HHHHHHH
Confidence 5789999999999851 2456789999999999999999999998 5667777
Q ss_pred HHhcCCCCc
Q 036571 179 LKNVGFYTW 187 (251)
Q Consensus 179 L~~~G~~~~ 187 (251)
++.+|+..+
T Consensus 55 ~~~l~l~~~ 63 (273)
T PRK00192 55 RKELGLEDP 63 (273)
T ss_pred HHHcCCCCC
Confidence 888888643
No 116
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=98.42 E-value=7.5e-07 Score=76.12 Aligned_cols=58 Identities=17% Similarity=0.138 Sum_probs=45.2
Q ss_pred CcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHH
Q 036571 99 REIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENN 178 (251)
Q Consensus 99 ~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~ 178 (251)
++.|+|||||||+++. ...-|.+.+.+++|+++|++++++|||+.. ...+.
T Consensus 1 ik~v~~DlDGTLl~~~--------------------------~~i~~~~~~~i~~l~~~g~~~~~~TGR~~~---~~~~~ 51 (215)
T TIGR01487 1 IKLVAIDIDGTLTEPN--------------------------RMISERAIEAIRKAEKKGIPVSLVTGNTVP---FARAL 51 (215)
T ss_pred CcEEEEecCCCcCCCC--------------------------cccCHHHHHHHHHHHHCCCEEEEEcCCcch---hHHHH
Confidence 3689999999999751 345678899999999999999999999844 34444
Q ss_pred HHhcCCC
Q 036571 179 LKNVGFY 185 (251)
Q Consensus 179 L~~~G~~ 185 (251)
++.+++.
T Consensus 52 ~~~l~~~ 58 (215)
T TIGR01487 52 AVLIGTS 58 (215)
T ss_pred HHHhCCC
Confidence 5556665
No 117
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=98.40 E-value=9.9e-07 Score=76.53 Aligned_cols=56 Identities=23% Similarity=0.327 Sum_probs=46.4
Q ss_pred EEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHH
Q 036571 101 IWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLK 180 (251)
Q Consensus 101 avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~ 180 (251)
.|+|||||||++. ....+.+.+.+++|+++|++++++|||+ +......++
T Consensus 1 li~~DlDGTLl~~---------------------------~~~~~~~~~ai~~l~~~G~~~vi~TgR~---~~~~~~~~~ 50 (225)
T TIGR02461 1 VIFTDLDGTLLPP---------------------------GYEPGPAREALEELKDLGFPIVFVSSKT---RAEQEYYRE 50 (225)
T ss_pred CEEEeCCCCCcCC---------------------------CCCchHHHHHHHHHHHCCCEEEEEeCCC---HHHHHHHHH
Confidence 3789999999984 1245679999999999999999999999 556677788
Q ss_pred hcCCCC
Q 036571 181 NVGFYT 186 (251)
Q Consensus 181 ~~G~~~ 186 (251)
++|+..
T Consensus 51 ~lg~~~ 56 (225)
T TIGR02461 51 ELGVEP 56 (225)
T ss_pred HcCCCC
Confidence 888754
No 118
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=98.39 E-value=1.1e-06 Score=72.79 Aligned_cols=85 Identities=26% Similarity=0.335 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCCCC------CCccc-cc--hHHHHHHH--
Q 036571 145 PESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSSYS------GETAV-VY--KSSERKRL-- 213 (251)
Q Consensus 145 pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~------~kp~~-~~--K~~~r~~L-- 213 (251)
|++.++++.++++|++++++|+.+ +..+...++..|++.. .++.....+. ++..+ .. |....+++
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~---~~~i~~~~~~~~i~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~~ 167 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSP---DEIIEPIAERLGIDDD-NVIGNELFDNGGGIFTGRITGSNCGGKAEALKELYI 167 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEE---HHHHHHHHHHTTSSEG-GEEEEEEECTTCCEEEEEEEEEEESHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEEEECCCc---HHHHHHHHHHcCCCce-EEEEEeeeecccceeeeeECCCCCCcHHHHHHHHHH
Confidence 455599999999999999999998 6677777788999863 2222111100 11001 12 55555555
Q ss_pred -H--hcCccEEEEEcCCcccccc
Q 036571 214 -E--KKGYRIIGNIGDQWSDLLG 233 (251)
Q Consensus 214 -~--~~g~~i~~~VGDq~sDi~g 233 (251)
. ..+...+++|||+.+|+..
T Consensus 168 ~~~~~~~~~~~~~iGDs~~D~~~ 190 (192)
T PF12710_consen 168 RDEEDIDPDRVIAIGDSINDLPM 190 (192)
T ss_dssp HHHHTHTCCEEEEEESSGGGHHH
T ss_pred HhhcCCCCCeEEEEECCHHHHHH
Confidence 1 2457789999999999864
No 119
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=98.38 E-value=1.1e-06 Score=75.17 Aligned_cols=55 Identities=20% Similarity=0.249 Sum_probs=45.3
Q ss_pred EEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHh
Q 036571 102 WIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKN 181 (251)
Q Consensus 102 vvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~ 181 (251)
|++|||||||++. ....+.+.+.++.|+++|++++++|||+ ...+...++.
T Consensus 2 i~~DlDGTLL~~~--------------------------~~~~~~~~~~l~~l~~~gi~~~i~TgR~---~~~~~~~~~~ 52 (221)
T TIGR02463 2 VFSDLDGTLLDSH--------------------------SYDWQPAAPWLTRLQEAGIPVILCTSKT---AAEVEYLQKA 52 (221)
T ss_pred EEEeCCCCCcCCC--------------------------CCCcHHHHHHHHHHHHCCCeEEEEcCCC---HHHHHHHHHH
Confidence 7899999999851 2245558999999999999999999999 5566777777
Q ss_pred cCCC
Q 036571 182 VGFY 185 (251)
Q Consensus 182 ~G~~ 185 (251)
+|+.
T Consensus 53 l~~~ 56 (221)
T TIGR02463 53 LGLT 56 (221)
T ss_pred cCCC
Confidence 8876
No 120
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=98.36 E-value=1e-06 Score=75.37 Aligned_cols=55 Identities=25% Similarity=0.228 Sum_probs=42.6
Q ss_pred EEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHh
Q 036571 102 WIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKN 181 (251)
Q Consensus 102 vvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~ 181 (251)
|+|||||||+++. ...-|...+.+++|+++|+.++++|||+. ....+-++.
T Consensus 1 i~~DlDGTLl~~~--------------------------~~i~~~~~~al~~l~~~Gi~~~~aTGR~~---~~~~~~~~~ 51 (225)
T TIGR01482 1 IASDIDGTLTDPN--------------------------RAINESALEAIRKAESVGIPVVLVTGNSV---QFARALAKL 51 (225)
T ss_pred CeEeccCccCCCC--------------------------cccCHHHHHHHHHHHHCCCEEEEEcCCch---HHHHHHHHH
Confidence 5899999999862 23456778899999999999999999994 344445566
Q ss_pred cCCC
Q 036571 182 VGFY 185 (251)
Q Consensus 182 ~G~~ 185 (251)
+|++
T Consensus 52 l~~~ 55 (225)
T TIGR01482 52 IGTP 55 (225)
T ss_pred hCCC
Confidence 6754
No 121
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=98.36 E-value=1.4e-06 Score=77.88 Aligned_cols=97 Identities=26% Similarity=0.437 Sum_probs=73.9
Q ss_pred CCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHH
Q 036571 97 DGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTE 176 (251)
Q Consensus 97 ~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~ 176 (251)
++.+.+|||.||.|.. ...++||+.+.++.|+++|.+++|+||++.+.|+...
T Consensus 20 ~~~DtfifDcDGVlW~---------------------------g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~ 72 (306)
T KOG2882|consen 20 DSFDTFIFDCDGVLWL---------------------------GEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYM 72 (306)
T ss_pred hhcCEEEEcCCcceee---------------------------cCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHH
Confidence 5678999999996654 2689999999999999999999999999999999999
Q ss_pred HHHHhcCCCC-cceEEEeCCC----C--CCCc--cccc---hHHHHHHHHhcCccE
Q 036571 177 NNLKNVGFYT-WENLILKGSS----Y--SGET--AVVY---KSSERKRLEKKGYRI 220 (251)
Q Consensus 177 ~~L~~~G~~~-~~~lilr~~~----~--~~kp--~~~~---K~~~r~~L~~~g~~i 220 (251)
+.++++|+.. -.+-|+.+.. . +.+| ...| .+.++++|++.|++.
T Consensus 73 kK~~~lG~~~v~e~~i~ssa~~~a~ylk~~~~~~k~Vyvig~~gi~~eL~~aG~~~ 128 (306)
T KOG2882|consen 73 KKFAKLGFNSVKEENIFSSAYAIADYLKKRKPFGKKVYVIGEEGIREELDEAGFEY 128 (306)
T ss_pred HHHHHhCccccCcccccChHHHHHHHHHHhCcCCCeEEEecchhhhHHHHHcCcee
Confidence 9999999983 2333333321 0 1111 1123 578899999989654
No 122
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.35 E-value=1.4e-06 Score=77.19 Aligned_cols=59 Identities=10% Similarity=0.135 Sum_probs=47.7
Q ss_pred CCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHH
Q 036571 98 GREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTEN 177 (251)
Q Consensus 98 ~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~ 177 (251)
.++.|++||||||++.. ....+.+.+.+++|+++|++++++|||+ ......
T Consensus 6 ~~~lI~~DlDGTLL~~~--------------------------~~i~~~~~~ai~~l~~~Gi~~viaTGR~---~~~i~~ 56 (271)
T PRK03669 6 DPLLIFTDLDGTLLDSH--------------------------TYDWQPAAPWLTRLREAQVPVILCSSKT---AAEMLP 56 (271)
T ss_pred CCeEEEEeCccCCcCCC--------------------------CcCcHHHHHHHHHHHHcCCeEEEEcCCC---HHHHHH
Confidence 46899999999999751 2234678899999999999999999999 445666
Q ss_pred HHHhcCCC
Q 036571 178 NLKNVGFY 185 (251)
Q Consensus 178 ~L~~~G~~ 185 (251)
.++.+|++
T Consensus 57 ~~~~l~~~ 64 (271)
T PRK03669 57 LQQTLGLQ 64 (271)
T ss_pred HHHHhCCC
Confidence 67777874
No 123
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=98.34 E-value=1.5e-06 Score=76.57 Aligned_cols=59 Identities=29% Similarity=0.423 Sum_probs=50.1
Q ss_pred CcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHH
Q 036571 99 REIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENN 178 (251)
Q Consensus 99 ~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~ 178 (251)
++.++|||||||++.. ...-+.+.+.+++++++|++++++|||+ .......
T Consensus 3 ~kli~~DlDGTLl~~~--------------------------~~i~~~~~~al~~~~~~g~~v~iaTGR~---~~~~~~~ 53 (264)
T COG0561 3 IKLLAFDLDGTLLDSN--------------------------KTISPETKEALARLREKGVKVVLATGRP---LPDVLSI 53 (264)
T ss_pred eeEEEEcCCCCccCCC--------------------------CccCHHHHHHHHHHHHCCCEEEEECCCC---hHHHHHH
Confidence 5789999999999862 3477889999999999999999999999 4566777
Q ss_pred HHhcCCCC
Q 036571 179 LKNVGFYT 186 (251)
Q Consensus 179 L~~~G~~~ 186 (251)
++.+|+..
T Consensus 54 ~~~l~~~~ 61 (264)
T COG0561 54 LEELGLDG 61 (264)
T ss_pred HHHcCCCc
Confidence 77788865
No 124
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.33 E-value=1.9e-06 Score=77.49 Aligned_cols=59 Identities=15% Similarity=0.111 Sum_probs=47.8
Q ss_pred CcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHH
Q 036571 99 REIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENN 178 (251)
Q Consensus 99 ~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~ 178 (251)
++.|++|||||||+.. ....+.+.+.+++|+++|+.|++.|||+ .......
T Consensus 1 ~KLIftDLDGTLLd~~--------------------------~~~~~~a~~aL~~Lk~~GI~vVlaTGRt---~~ev~~l 51 (302)
T PRK12702 1 MRLVLSSLDGSLLDLE--------------------------FNSYGAARQALAALERRSIPLVLYSLRT---RAQLEHL 51 (302)
T ss_pred CcEEEEeCCCCCcCCC--------------------------CcCCHHHHHHHHHHHHCCCEEEEEcCCC---HHHHHHH
Confidence 4689999999999962 2234568899999999999999999999 5566677
Q ss_pred HHhcCCCC
Q 036571 179 LKNVGFYT 186 (251)
Q Consensus 179 L~~~G~~~ 186 (251)
++.+|+..
T Consensus 52 ~~~Lgl~~ 59 (302)
T PRK12702 52 CRQLRLEH 59 (302)
T ss_pred HHHhCCCC
Confidence 77788864
No 125
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=98.33 E-value=1.7e-06 Score=73.94 Aligned_cols=56 Identities=34% Similarity=0.432 Sum_probs=47.6
Q ss_pred EEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHh
Q 036571 102 WIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKN 181 (251)
Q Consensus 102 vvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~ 181 (251)
|++||||||++.. ...-|.+++.++.|+++|+++++.|||+ .......+..
T Consensus 1 i~~DlDGTLl~~~--------------------------~~i~~~~~~al~~l~~~g~~~~i~TGR~---~~~~~~~~~~ 51 (254)
T PF08282_consen 1 IFSDLDGTLLNSD--------------------------GKISPETIEALKELQEKGIKLVIATGRS---YSSIKRLLKE 51 (254)
T ss_dssp EEEECCTTTCSTT--------------------------SSSCHHHHHHHHHHHHTTCEEEEECSST---HHHHHHHHHH
T ss_pred cEEEECCceecCC--------------------------CeeCHHHHHHHHhhcccceEEEEEccCc---cccccccccc
Confidence 6899999999852 3366899999999999999999999999 6677778888
Q ss_pred cCCCC
Q 036571 182 VGFYT 186 (251)
Q Consensus 182 ~G~~~ 186 (251)
+++..
T Consensus 52 ~~~~~ 56 (254)
T PF08282_consen 52 LGIDD 56 (254)
T ss_dssp TTHCS
T ss_pred ccchh
Confidence 88863
No 126
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=98.32 E-value=9.7e-06 Score=69.64 Aligned_cols=103 Identities=17% Similarity=0.122 Sum_probs=61.2
Q ss_pred CCCchHHHHHHH-HHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCC--CCCCc--cccchHHHHHHHHh
Q 036571 141 APSLPESLKLYK-KLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSS--YSGET--AVVYKSSERKRLEK 215 (251)
Q Consensus 141 ~~~~pga~ell~-~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~--~~~kp--~~~~K~~~r~~L~~ 215 (251)
..++|++.++++ .++++|++++++||++ +..+....+..|+-.-++++-..-. +.++- ...+-+++...|++
T Consensus 93 ~~l~pga~e~L~~~l~~~G~~v~IvSas~---~~~~~~ia~~~~~~~~~~~i~t~le~~~gg~~~g~~c~g~~Kv~rl~~ 169 (210)
T TIGR01545 93 VTAFPLVAERLRQYLESSDADIWLITGSP---QPLVEAVYFDSNFIHRLNLIASQIERGNGGWVLPLRCLGHEKVAQLEQ 169 (210)
T ss_pred CCCCccHHHHHHHHHHhCCCEEEEEcCCc---HHHHHHHHHhccccccCcEEEEEeEEeCCceEcCccCCChHHHHHHHH
Confidence 367999999996 7888999999999998 4455555556554222344422110 11211 11232333333332
Q ss_pred ---cCccEEEEEcCCccccccc-cccCcEEEeCCC
Q 036571 216 ---KGYRIIGNIGDQWSDLLGT-NAGNRTFKLPDP 246 (251)
Q Consensus 216 ---~g~~i~~~VGDq~sDi~ga-~~g~r~f~lPnp 246 (251)
..+......||+.+|+.=- .++..+..=|+|
T Consensus 170 ~~~~~~~~~~aYsDS~~D~pmL~~a~~~~~Vnp~~ 204 (210)
T TIGR01545 170 KIGSPLKLYSGYSDSKQDNPLLAFCEHRWRVSKRG 204 (210)
T ss_pred HhCCChhheEEecCCcccHHHHHhCCCcEEECcch
Confidence 2456677899999998754 345555555654
No 127
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=98.31 E-value=2.1e-06 Score=75.20 Aligned_cols=56 Identities=36% Similarity=0.475 Sum_probs=46.1
Q ss_pred EEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHh
Q 036571 102 WIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKN 181 (251)
Q Consensus 102 vvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~ 181 (251)
++|||||||++.. ...-+.+.+.+++|+++|++++++|||+ .......+++
T Consensus 2 i~~DlDGTLl~~~--------------------------~~i~~~~~~~i~~l~~~G~~~~iaTGR~---~~~~~~~~~~ 52 (256)
T TIGR00099 2 IFIDLDGTLLNDD--------------------------HTISPSTKEALAKLREKGIKVVLATGRP---YKEVKNILKE 52 (256)
T ss_pred EEEeCCCCCCCCC--------------------------CccCHHHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHH
Confidence 7899999999851 2345778999999999999999999999 5566677778
Q ss_pred cCCCC
Q 036571 182 VGFYT 186 (251)
Q Consensus 182 ~G~~~ 186 (251)
+|+..
T Consensus 53 ~~~~~ 57 (256)
T TIGR00099 53 LGLDT 57 (256)
T ss_pred cCCCC
Confidence 88763
No 128
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=98.31 E-value=1.9e-06 Score=75.65 Aligned_cols=56 Identities=21% Similarity=0.252 Sum_probs=46.5
Q ss_pred EEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHh
Q 036571 102 WIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKN 181 (251)
Q Consensus 102 vvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~ 181 (251)
|+|||||||+++. ...++.+.+.++.|+++|++++++|||+ .....+.+++
T Consensus 2 i~~DlDGTll~~~--------------------------~~~~~~~~~~i~~l~~~g~~~~~~TgR~---~~~~~~~~~~ 52 (256)
T TIGR01486 2 IFTDLDGTLLDPH--------------------------GYDWGPAKEVLERLQELGIPVIPCTSKT---AAEVEYLRKE 52 (256)
T ss_pred EEEcCCCCCcCCC--------------------------CcCchHHHHHHHHHHHCCCeEEEEcCCC---HHHHHHHHHH
Confidence 7899999999852 1244568999999999999999999999 5667778888
Q ss_pred cCCCC
Q 036571 182 VGFYT 186 (251)
Q Consensus 182 ~G~~~ 186 (251)
+|++.
T Consensus 53 ~~~~~ 57 (256)
T TIGR01486 53 LGLED 57 (256)
T ss_pred cCCCC
Confidence 88864
No 129
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=98.30 E-value=1.6e-06 Score=79.17 Aligned_cols=59 Identities=17% Similarity=0.225 Sum_probs=51.2
Q ss_pred EEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHC----CCeEEEEeCCCcccHHHHH
Q 036571 101 IWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSL----GIKIVFLTGRPEDQRSVTE 176 (251)
Q Consensus 101 avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~----G~~I~~vTnR~e~~r~~T~ 176 (251)
+++||+||||.++ .+++|++.++++.|+++ |+++.|+||+....+....
T Consensus 2 ~~ifD~DGvL~~g---------------------------~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~ 54 (321)
T TIGR01456 2 GFAFDIDGVLFRG---------------------------KKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARA 54 (321)
T ss_pred EEEEeCcCceECC---------------------------ccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHH
Confidence 7899999999986 45699999999999998 9999999999877666666
Q ss_pred HHH-HhcCCCC
Q 036571 177 NNL-KNVGFYT 186 (251)
Q Consensus 177 ~~L-~~~G~~~ 186 (251)
+.| +++|++.
T Consensus 55 ~~l~~~lG~~~ 65 (321)
T TIGR01456 55 EEISSLLGVDV 65 (321)
T ss_pred HHHHHHcCCCC
Confidence 666 8889875
No 130
>PTZ00174 phosphomannomutase; Provisional
Probab=98.28 E-value=3.2e-06 Score=74.12 Aligned_cols=54 Identities=28% Similarity=0.313 Sum_probs=43.2
Q ss_pred CCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHH
Q 036571 98 GREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTEN 177 (251)
Q Consensus 98 ~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~ 177 (251)
..+.|+||||||||++. ...-|...+.+++++++|++++++|||+ ...+.+
T Consensus 4 ~~klia~DlDGTLL~~~--------------------------~~is~~~~~ai~~l~~~Gi~~viaTGR~---~~~i~~ 54 (247)
T PTZ00174 4 KKTILLFDVDGTLTKPR--------------------------NPITQEMKDTLAKLKSKGFKIGVVGGSD---YPKIKE 54 (247)
T ss_pred CCeEEEEECcCCCcCCC--------------------------CCCCHHHHHHHHHHHHCCCEEEEEcCCC---HHHHHH
Confidence 46899999999999862 3455678999999999999999999998 334455
Q ss_pred HHH
Q 036571 178 NLK 180 (251)
Q Consensus 178 ~L~ 180 (251)
.|.
T Consensus 55 ~l~ 57 (247)
T PTZ00174 55 QLG 57 (247)
T ss_pred HHh
Confidence 554
No 131
>PLN02887 hydrolase family protein
Probab=98.19 E-value=5.8e-06 Score=81.03 Aligned_cols=59 Identities=29% Similarity=0.316 Sum_probs=47.8
Q ss_pred CCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHH
Q 036571 98 GREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTEN 177 (251)
Q Consensus 98 ~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~ 177 (251)
+++.|+|||||||+++. ...-+..++.+++|+++|+.++++|||+ ......
T Consensus 307 ~iKLIa~DLDGTLLn~d--------------------------~~Is~~t~eAI~kl~ekGi~~vIATGR~---~~~i~~ 357 (580)
T PLN02887 307 KFSYIFCDMDGTLLNSK--------------------------SQISETNAKALKEALSRGVKVVIATGKA---RPAVID 357 (580)
T ss_pred CccEEEEeCCCCCCCCC--------------------------CccCHHHHHHHHHHHHCCCeEEEEcCCC---HHHHHH
Confidence 46889999999999862 2456778999999999999999999999 455566
Q ss_pred HHHhcCCC
Q 036571 178 NLKNVGFY 185 (251)
Q Consensus 178 ~L~~~G~~ 185 (251)
.++.+|+.
T Consensus 358 ~l~~L~l~ 365 (580)
T PLN02887 358 ILKMVDLA 365 (580)
T ss_pred HHHHhCcc
Confidence 66666764
No 132
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=98.19 E-value=1.4e-05 Score=71.56 Aligned_cols=105 Identities=18% Similarity=0.191 Sum_probs=70.6
Q ss_pred ChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEE------EeCCC-CCCC
Q 036571 128 NSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLI------LKGSS-YSGE 200 (251)
Q Consensus 128 ~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~li------lr~~~-~~~k 200 (251)
+.+...+++.....++.||+.+|++.|+++|++++++|+.. +......|+++|+...+..+ +..++ ..++
T Consensus 107 ~~e~i~~~v~~~~l~l~pG~~efl~~L~~~GIpv~IvS~G~---~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~ 183 (277)
T TIGR01544 107 PKAKIKEIVAESDVMLKDGYENFFDKLQQHSIPVFIFSAGI---GNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGF 183 (277)
T ss_pred CHHHHHHHHhhcCCccCcCHHHHHHHHHHCCCcEEEEeCCc---HHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCC
Confidence 33444445544678999999999999999999999999998 67888888888985333222 33333 2345
Q ss_pred cccc----chHH-HHHH----HH-hcCccEEEEEcCCcccccccc
Q 036571 201 TAVV----YKSS-ERKR----LE-KKGYRIIGNIGDQWSDLLGTN 235 (251)
Q Consensus 201 p~~~----~K~~-~r~~----L~-~~g~~i~~~VGDq~sDi~ga~ 235 (251)
+.+. .|.. .++. +. .....-+++|||+.+|+..+.
T Consensus 184 ~~P~i~~~~K~~~v~~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~ 228 (277)
T TIGR01544 184 KGPLIHTFNKNHDVALRNTEYFNQLKDRSNIILLGDSQGDLRMAD 228 (277)
T ss_pred CCCcccccccHHHHHHHHHHHhCccCCcceEEEECcChhhhhHhc
Confidence 4441 2432 2211 11 023456899999999999875
No 133
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=98.18 E-value=2e-05 Score=67.67 Aligned_cols=135 Identities=19% Similarity=0.296 Sum_probs=86.0
Q ss_pred CCCcEEEEecCCCccCC-hhhHhhhcCCCCC--------CChHHHHHHHhc-------------------CCCCCchHHH
Q 036571 97 DGREIWIFDIDETSLSN-LPYYAKHGFGVEP--------FNSTLFNEWVNK-------------------GEAPSLPESL 148 (251)
Q Consensus 97 ~~~~avvfDIDgTlldn-~~~~~~~~~~~~~--------~~~~~~~~wv~~-------------------~~~~~~pga~ 148 (251)
..+-.++||.|.|++|- +.-+.....+... +....|++++.. ...|..||++
T Consensus 11 ~~ril~~FDFD~TIid~dSD~wVv~~lp~~~l~~qL~~t~p~~~Wne~M~rv~k~Lheqgv~~~~ik~~~r~iP~~Pgmv 90 (256)
T KOG3120|consen 11 SPRILLVFDFDRTIIDQDSDNWVVDELPTTDLFNQLRDTYPKGFWNELMDRVFKELHEQGVRIAEIKQVLRSIPIVPGMV 90 (256)
T ss_pred CCcEEEEEecCceeecCCcchHHHHhcccchhHHHHHHhcccchHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCccHH
Confidence 35567899999999983 3333332233211 223447777663 4578899999
Q ss_pred HHHHHHHHCCC-eEEEEeCCCcccHHHHHHHHHhcCCCCcc--------------eEEEeCCCC----CCCccccchHHH
Q 036571 149 KLYKKLLSLGI-KIVFLTGRPEDQRSVTENNLKNVGFYTWE--------------NLILKGSSY----SGETAVVYKSSE 209 (251)
Q Consensus 149 ell~~L~~~G~-~I~~vTnR~e~~r~~T~~~L~~~G~~~~~--------------~lilr~~~~----~~kp~~~~K~~~ 209 (251)
++++.+++.|. .+++||.-. .--..++|+.+|+..-| .|.+++-.. ...|.-.-|-..
T Consensus 91 ~lik~~ak~g~~eliIVSDaN---sfFIe~~Lea~~~~d~F~~IfTNPa~~da~G~L~v~pyH~~hsC~~CPsNmCKg~V 167 (256)
T KOG3120|consen 91 RLIKSAAKLGCFELIIVSDAN---SFFIEEILEAAGIHDLFSEIFTNPACVDASGRLLVRPYHTQHSCNLCPSNMCKGLV 167 (256)
T ss_pred HHHHHHHhCCCceEEEEecCc---hhHHHHHHHHccHHHHHHHHhcCCcccCCCCcEEeecCCCCCccCcCchhhhhhHH
Confidence 99999999996 999999877 34667899999986433 344544332 122322223322
Q ss_pred HHHHH----hcC--ccEEEEEcCCccccccc
Q 036571 210 RKRLE----KKG--YRIIGNIGDQWSDLLGT 234 (251)
Q Consensus 210 r~~L~----~~g--~~i~~~VGDq~sDi~ga 234 (251)
..++. +.| |+-.+||||.-+|+-..
T Consensus 168 l~~~~~s~~~~gv~yer~iYvGDG~nD~CP~ 198 (256)
T KOG3120|consen 168 LDELVASQLKDGVRYERLIYVGDGANDFCPV 198 (256)
T ss_pred HHHHHHHHhhcCCceeeEEEEcCCCCCcCcc
Confidence 22222 234 55789999999998543
No 134
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=98.16 E-value=5.1e-06 Score=68.43 Aligned_cols=108 Identities=20% Similarity=0.200 Sum_probs=61.8
Q ss_pred cEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCc-hHHHHHHHHHHHCCCeEEEEeCCCcc--------
Q 036571 100 EIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSL-PESLKLYKKLLSLGIKIVFLTGRPED-------- 170 (251)
Q Consensus 100 ~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~-pga~ell~~L~~~G~~I~~vTnR~e~-------- 170 (251)
|.+.||+||||+.+... ..|. ..+++| ..+ |++.+.|++|++.|+.|+++||=..-
T Consensus 1 Kia~fD~DgTLi~~~s~--------~~f~-~~~~D~------~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~ 65 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSG--------KKFP-KDPDDW------KFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKD 65 (159)
T ss_dssp SEEEE-SCTTTEE-STS--------TTS--SSTCGG------EEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCH
T ss_pred CEEEEeCCCCccCCCCC--------CcCc-CCHHHh------hhcchhHHHHHHHHHhcCCeEEEEeCccccccccccch
Confidence 46789999999986321 1111 011111 233 47999999999999999999996421
Q ss_pred ---cHHHHHHHHHhcCCCCcceEEEeCCC-CCCCccccchHHHHHHHHhc-------CccEEEEEcCCc
Q 036571 171 ---QRSVTENNLKNVGFYTWENLILKGSS-YSGETAVVYKSSERKRLEKK-------GYRIIGNIGDQW 228 (251)
Q Consensus 171 ---~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~~K~~~r~~L~~~-------g~~i~~~VGDq~ 228 (251)
.+......|+.+|++. .++..... .-+||.+ ++-..+.+. ......+|||..
T Consensus 66 ~~~~~~ki~~il~~l~ip~--~~~~a~~~d~~RKP~~----GM~~~~~~~~~~~~~id~~~Sf~VGDaa 128 (159)
T PF08645_consen 66 LENFHEKIENILKELGIPI--QVYAAPHKDPCRKPNP----GMWEFALKDYNDGVEIDLANSFYVGDAA 128 (159)
T ss_dssp HHHHHHHHHHHHHHCTS-E--EEEECGCSSTTSTTSS----HHHHHHCCCTSTT--S-CCC-EEEESSC
T ss_pred HHHHHHHHHHHHHHcCCce--EEEecCCCCCCCCCch----hHHHHHHHhccccccccccceEEEeccC
Confidence 2345566777889884 44444333 4567643 333333221 123479999973
No 135
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=98.14 E-value=3.9e-05 Score=63.00 Aligned_cols=142 Identities=14% Similarity=0.051 Sum_probs=75.1
Q ss_pred CCCCcEEEEecCCCccCChhhHhhh---cCCCCCCChHH---HHHHH---hcCCCCCchHHHHHHHHHHHCCCeEEEEeC
Q 036571 96 GDGREIWIFDIDETSLSNLPYYAKH---GFGVEPFNSTL---FNEWV---NKGEAPSLPESLKLYKKLLSLGIKIVFLTG 166 (251)
Q Consensus 96 ~~~~~avvfDIDgTlldn~~~~~~~---~~~~~~~~~~~---~~~wv---~~~~~~~~pga~ell~~L~~~G~~I~~vTn 166 (251)
..++..+|+|+|+||+.+..-.... .......+.+. ...+. ......+.||+.++|+.|.+. ++++++|+
T Consensus 3 ~~~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~-yel~I~T~ 81 (156)
T TIGR02250 3 REKKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKL-YEMHVYTM 81 (156)
T ss_pred cCCceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhh-cEEEEEeC
Confidence 3678999999999999874321000 00000000000 00000 001245789999999999955 99999999
Q ss_pred CCcccHHHHHHHHHhcCCCC-cc-eEEEeCCCCCCCccccchHHHHHHHHhcCccEEEEEcCCccccccccccCcEEEeC
Q 036571 167 RPEDQRSVTENNLKNVGFYT-WE-NLILKGSSYSGETAVVYKSSERKRLEKKGYRIIGNIGDQWSDLLGTNAGNRTFKLP 244 (251)
Q Consensus 167 R~e~~r~~T~~~L~~~G~~~-~~-~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i~~~VGDq~sDi~ga~~g~r~f~lP 244 (251)
.+ +..+...|+.++... ++ +.++..++..+. ..|. + ..+-....+.++.|+|+..=..... ...+.++
T Consensus 82 ~~---~~yA~~vl~~ldp~~~~F~~ri~~rd~~~~~---~~Kd-L-~~i~~~d~~~vvivDd~~~~~~~~~--~N~i~i~ 151 (156)
T TIGR02250 82 GT---RAYAQAIAKLIDPDGKYFGDRIISRDESGSP---HTKS-L-LRLFPADESMVVIIDDREDVWPWHK--RNLIQIE 151 (156)
T ss_pred Cc---HHHHHHHHHHhCcCCCeeccEEEEeccCCCC---cccc-H-HHHcCCCcccEEEEeCCHHHhhcCc--cCEEEeC
Confidence 99 555555666666653 34 444443332211 1232 1 1122223456788999874333322 2345554
Q ss_pred CCCC
Q 036571 245 DPMY 248 (251)
Q Consensus 245 np~y 248 (251)
--.|
T Consensus 152 ~~~~ 155 (156)
T TIGR02250 152 PYNY 155 (156)
T ss_pred Cccc
Confidence 4444
No 136
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=98.11 E-value=1.2e-05 Score=66.38 Aligned_cols=124 Identities=14% Similarity=0.067 Sum_probs=70.1
Q ss_pred CcEEEEecCCCccCChhhHhhhcCCCCCCChH-HHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHH
Q 036571 99 REIWIFDIDETSLSNLPYYAKHGFGVEPFNST-LFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTEN 177 (251)
Q Consensus 99 ~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~-~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~ 177 (251)
++.+|+|+||||+.++.--... ...|.-. ....-...--...-||+.+||+.|.+. +.|++.|+.++. ....
T Consensus 1 k~~lvlDLDeTLi~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~---yA~~ 73 (162)
T TIGR02251 1 KKTLVLDLDETLVHSTFKMPKV---DADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKW-YELVIFTASLEE---YADP 73 (162)
T ss_pred CcEEEEcCCCCcCCCCCCCCCC---CCceEEEEEecCcEEEEEEEECCCHHHHHHHHHhc-CEEEEEcCCcHH---HHHH
Confidence 4689999999999764211100 0000000 000000000135779999999999988 999999999944 4455
Q ss_pred HHHhcCCCC-cce-EEEeCCCCCCCccccchHHHHHHHHhcC--ccEEEEEcCCcccccccc
Q 036571 178 NLKNVGFYT-WEN-LILKGSSYSGETAVVYKSSERKRLEKKG--YRIIGNIGDQWSDLLGTN 235 (251)
Q Consensus 178 ~L~~~G~~~-~~~-lilr~~~~~~kp~~~~K~~~r~~L~~~g--~~i~~~VGDq~sDi~ga~ 235 (251)
.|..++... .+. .+.|......++. ..|. |...| .+-+++|||+..|+.++.
T Consensus 74 il~~ldp~~~~f~~~l~r~~~~~~~~~-~~K~-----L~~l~~~~~~vIiVDD~~~~~~~~~ 129 (162)
T TIGR02251 74 VLDILDRGGKVISRRLYRESCVFTNGK-YVKD-----LSLVGKDLSKVIIIDNSPYSYSLQP 129 (162)
T ss_pred HHHHHCcCCCEEeEEEEccccEEeCCC-EEeE-----chhcCCChhhEEEEeCChhhhccCc
Confidence 555556543 333 3344332222221 1222 22233 345899999999998874
No 137
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=98.08 E-value=2.4e-05 Score=71.98 Aligned_cols=99 Identities=23% Similarity=0.311 Sum_probs=67.9
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhc-C-------CCCcceEEEeCCC-C----CC--------
Q 036571 141 APSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNV-G-------FYTWENLILKGSS-Y----SG-------- 199 (251)
Q Consensus 141 ~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~-G-------~~~~~~lilr~~~-~----~~-------- 199 (251)
..+.||+.++|+.|+++|++++++||++ ++.|...|+.+ | +..+++.++.++. + .+
T Consensus 183 v~~~pgl~elL~~Lr~~G~klfLvTNS~---~~yt~~im~~l~g~~~~~~~w~~yFD~IIt~a~KP~FF~~~~pf~~v~~ 259 (343)
T TIGR02244 183 VLRDPKLPLFLSKLKEHGKKLFLLTNSD---YDYTDKGMKYLLGPFLGEHDWRDYFDVVIVDARKPGFFTEGRPFRQVDV 259 (343)
T ss_pred hccchhHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHHhhCCcccccchHhhCcEEEeCCCCCcccCCCCceEEEeC
Confidence 5669999999999999999999999999 66777777775 6 6666776654432 0 00
Q ss_pred -------------CccccchH----HHHHHHHhcCccEEEEEcCCc-ccccccc--ccCcEEEe
Q 036571 200 -------------ETAVVYKS----SERKRLEKKGYRIIGNIGDQW-SDLLGTN--AGNRTFKL 243 (251)
Q Consensus 200 -------------kp~~~~K~----~~r~~L~~~g~~i~~~VGDq~-sDi~ga~--~g~r~f~l 243 (251)
++...|.- ...+.+. ..-..+++|||+. +|+.+++ .|.|++.+
T Consensus 260 ~~g~~~~~~~~~l~~g~vY~gGn~~~~~~~l~-~~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI 322 (343)
T TIGR02244 260 ETGSLKWGEVDGLEPGKVYSGGSLKQFHELLK-WRGKEVLYFGDHIYGDLLRSKKKRGWRTAAI 322 (343)
T ss_pred CCCcccCCccccccCCCeEeCCCHHHHHHHHC-CCCCcEEEECCcchHHHHhhHHhcCcEEEEE
Confidence 01112321 1112222 2234689999999 9999996 78888854
No 138
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=98.07 E-value=4.9e-06 Score=69.93 Aligned_cols=88 Identities=22% Similarity=0.295 Sum_probs=61.5
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCcc
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYR 219 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~ 219 (251)
..++.|++.++++.|+++|+++.++||.. ...+....+.+|+.. ..+..... +||.+.......+.+...+ .
T Consensus 125 ~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~---~~~a~~~~~~lgi~~--~~v~a~~~--~kP~~k~~~~~i~~l~~~~-~ 196 (215)
T PF00702_consen 125 RDPLRPGAKEALQELKEAGIKVAILTGDN---ESTASAIAKQLGIFD--SIVFARVI--GKPEPKIFLRIIKELQVKP-G 196 (215)
T ss_dssp EEEBHTTHHHHHHHHHHTTEEEEEEESSE---HHHHHHHHHHTTSCS--EEEEESHE--TTTHHHHHHHHHHHHTCTG-G
T ss_pred cCcchhhhhhhhhhhhccCcceeeeeccc---ccccccccccccccc--cccccccc--ccccchhHHHHHHHHhcCC-C
Confidence 36889999999999999999999999988 567777778899953 22222211 3443321134444454222 3
Q ss_pred EEEEEcCCcccccccc
Q 036571 220 IIGNIGDQWSDLLGTN 235 (251)
Q Consensus 220 i~~~VGDq~sDi~ga~ 235 (251)
.+++|||..+|+.+..
T Consensus 197 ~v~~vGDg~nD~~al~ 212 (215)
T PF00702_consen 197 EVAMVGDGVNDAPALK 212 (215)
T ss_dssp GEEEEESSGGHHHHHH
T ss_pred EEEEEccCHHHHHHHH
Confidence 7899999999998764
No 139
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=98.04 E-value=1.7e-05 Score=66.88 Aligned_cols=52 Identities=31% Similarity=0.483 Sum_probs=41.5
Q ss_pred EEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHh
Q 036571 102 WIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKN 181 (251)
Q Consensus 102 vvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~ 181 (251)
++||+||||+++. ..++-|.+.+.|++|+++|++++++|||+ .....+.+..
T Consensus 2 i~~D~DgTL~~~~-------------------------~~~~~~~~~~~l~~l~~~g~~~~i~TGR~---~~~~~~~~~~ 53 (204)
T TIGR01484 2 LFFDLDGTLLDPN-------------------------AHELSPETIEALERLREAGVKVVLVTGRS---LAEIKELLKQ 53 (204)
T ss_pred EEEeCcCCCcCCC-------------------------CCcCCHHHHHHHHHHHHCCCEEEEECCCC---HHHHHHHHHh
Confidence 7899999999851 13466889999999999999999999999 4455555554
No 140
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=4.4e-05 Score=68.92 Aligned_cols=124 Identities=19% Similarity=0.098 Sum_probs=86.9
Q ss_pred cEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcC-CCCCchHHHHHHHHHHHCC-CeEEEEeCCCcccHHHHHH
Q 036571 100 EIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKG-EAPSLPESLKLYKKLLSLG-IKIVFLTGRPEDQRSVTEN 177 (251)
Q Consensus 100 ~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~-~~~~~pga~ell~~L~~~G-~~I~~vTnR~e~~r~~T~~ 177 (251)
=.+|-|||+|+..+.-- .-.-..|+.|.... ...++||+-.+|+.|.+.| ..|+||||.+...-+...+
T Consensus 162 igiISDiDDTV~~T~V~---------~~~r~~~~s~~l~~~tr~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L~e 232 (373)
T COG4850 162 IGIISDIDDTVKVTGVT---------EGPRKAGRSLLLHALTRQVIPGVSAWYRALTNLGDAPVFYVSNSPWQLFPTLQE 232 (373)
T ss_pred eeeeeccccceEecccc---------cchHHHHHHhhhcccccCCCCCHHHHHHHHHhcCCCCeEEecCChhHhHHHHHH
Confidence 36899999999986210 00123577776654 4689999999999999999 9999999999887777788
Q ss_pred HHHhcCCCCcceEEEeCCCC----CCCccccc-hHHHHHHHHhcCccEEEEEcCCc-ccccc
Q 036571 178 NLKNVGFYTWENLILKGSSY----SGETAVVY-KSSERKRLEKKGYRIIGNIGDQW-SDLLG 233 (251)
Q Consensus 178 ~L~~~G~~~~~~lilr~~~~----~~kp~~~~-K~~~r~~L~~~g~~i~~~VGDq~-sDi~g 233 (251)
.|...+||. ..++++..+. -..+...- +..+|..+.+.+-.-++.|||+= .|.+.
T Consensus 233 fi~~~~~P~-GPl~L~~~g~~~~~i~~sga~rK~~~l~nil~~~p~~kfvLVGDsGE~DpeI 293 (373)
T COG4850 233 FITNRNFPY-GPLLLRRWGGVLDNIIESGAARKGQSLRNILRRYPDRKFVLVGDSGEHDPEI 293 (373)
T ss_pred HHhcCCCCC-CchhHhhcCCcccccccchhhhcccHHHHHHHhCCCceEEEecCCCCcCHHH
Confidence 888888986 5677764431 01111111 34566667766666678899975 66654
No 141
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=97.94 E-value=2.9e-05 Score=76.86 Aligned_cols=61 Identities=20% Similarity=0.237 Sum_probs=47.6
Q ss_pred CCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHH
Q 036571 97 DGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTE 176 (251)
Q Consensus 97 ~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~ 176 (251)
-.++.|++||||||+++. ....+.+.+.++.|+++|++++++|||+ .....
T Consensus 414 ~~~KLIfsDLDGTLLd~d--------------------------~~i~~~t~eAL~~L~ekGI~~VIATGRs---~~~i~ 464 (694)
T PRK14502 414 QFKKIVYTDLDGTLLNPL--------------------------TYSYSTALDALRLLKDKELPLVFCSAKT---MGEQD 464 (694)
T ss_pred ceeeEEEEECcCCCcCCC--------------------------CccCHHHHHHHHHHHHcCCeEEEEeCCC---HHHHH
Confidence 456889999999999862 1233467889999999999999999999 44556
Q ss_pred HHHHhcCCCC
Q 036571 177 NNLKNVGFYT 186 (251)
Q Consensus 177 ~~L~~~G~~~ 186 (251)
..++.+|+..
T Consensus 465 ~l~~~Lgl~~ 474 (694)
T PRK14502 465 LYRNELGIKD 474 (694)
T ss_pred HHHHHcCCCC
Confidence 6667777753
No 142
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=97.93 E-value=5.1e-05 Score=63.21 Aligned_cols=133 Identities=20% Similarity=0.271 Sum_probs=66.3
Q ss_pred CcEEEEecCCCccCChhhHhhhcCCCCCCChHHHH-HHHhc-C-CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHH
Q 036571 99 REIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFN-EWVNK-G-EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVT 175 (251)
Q Consensus 99 ~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~-~wv~~-~-~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T 175 (251)
++.||||+|.||-+-.-+.. ...||....=. .-++. + ....+|++.++|+.|+++|++++++|..++ .+..
T Consensus 3 PklvvFDLD~TlW~~~~~~~----~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~--P~~A 76 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPPWMDTH----VGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDE--PDWA 76 (169)
T ss_dssp -SEEEE-STTTSSSS-TTTS----S-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S---HHHH
T ss_pred CcEEEEcCcCCCCchhHhhc----cCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCC--hHHH
Confidence 68999999999998532221 11111100000 00111 1 257899999999999999999999996653 3577
Q ss_pred HHHHHhcCCC----------CcceEEEeCCCCCCCccccchHHHHHHHH-hc--CccEEEEEcCCcccccccc-ccCcEE
Q 036571 176 ENNLKNVGFY----------TWENLILKGSSYSGETAVVYKSSERKRLE-KK--GYRIIGNIGDQWSDLLGTN-AGNRTF 241 (251)
Q Consensus 176 ~~~L~~~G~~----------~~~~lilr~~~~~~kp~~~~K~~~r~~L~-~~--g~~i~~~VGDq~sDi~ga~-~g~r~f 241 (251)
.+.|+.+++. .++... +-..++ |..-++.|. +. .|...++++|...-+.... .|-..+
T Consensus 77 ~~~L~~l~i~~~~~~~~~~~~~F~~~---eI~~gs-----K~~Hf~~i~~~tgI~y~eMlFFDDe~~N~~~v~~lGV~~v 148 (169)
T PF12689_consen 77 RELLKLLEIDDADGDGVPLIEYFDYL---EIYPGS-----KTTHFRRIHRKTGIPYEEMLFFDDESRNIEVVSKLGVTCV 148 (169)
T ss_dssp HHHHHHTT-C----------CCECEE---EESSS------HHHHHHHHHHHH---GGGEEEEES-HHHHHHHHTTT-EEE
T ss_pred HHHHHhcCCCccccccccchhhcchh---heecCc-----hHHHHHHHHHhcCCChhHEEEecCchhcceeeEecCcEEE
Confidence 7888888998 222110 001111 222222222 22 3677999999884444333 677777
Q ss_pred EeCC
Q 036571 242 KLPD 245 (251)
Q Consensus 242 ~lPn 245 (251)
..||
T Consensus 149 ~v~~ 152 (169)
T PF12689_consen 149 LVPD 152 (169)
T ss_dssp E-SS
T ss_pred EeCC
Confidence 7776
No 143
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=97.92 E-value=3.9e-05 Score=75.00 Aligned_cols=103 Identities=24% Similarity=0.291 Sum_probs=75.3
Q ss_pred CCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCC-CeEEEEeCCCcccHHHH
Q 036571 97 DGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLG-IKIVFLTGRPEDQRSVT 175 (251)
Q Consensus 97 ~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G-~~I~~vTnR~e~~r~~T 175 (251)
++...+.+..||+.+-.. .-.+++.||+.+++++|+++| ++++++||.+ +..+
T Consensus 362 ~g~~~~~v~~~~~~~g~i-----------------------~~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~---~~~a 415 (556)
T TIGR01525 362 QGKTVVFVAVDGELLGVI-----------------------ALRDQLRPEAKEAIAALKRAGGIKLVMLTGDN---RSAA 415 (556)
T ss_pred CCcEEEEEEECCEEEEEE-----------------------EecccchHhHHHHHHHHHHcCCCeEEEEeCCC---HHHH
Confidence 456677788888665431 114789999999999999999 9999999998 6677
Q ss_pred HHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCccEEEEEcCCccccccccc
Q 036571 176 ENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRIIGNIGDQWSDLLGTNA 236 (251)
Q Consensus 176 ~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i~~~VGDq~sDi~ga~~ 236 (251)
...++++|+..++..+ . +.-|....+++...+. .+++|||+.+|+.++..
T Consensus 416 ~~i~~~lgi~~~f~~~----~------p~~K~~~v~~l~~~~~-~v~~vGDg~nD~~al~~ 465 (556)
T TIGR01525 416 EAVAAELGIDEVHAEL----L------PEDKLAIVKELQEEGG-VVAMVGDGINDAPALAA 465 (556)
T ss_pred HHHHHHhCCCeeeccC----C------HHHHHHHHHHHHHcCC-EEEEEECChhHHHHHhh
Confidence 8888899996533211 1 1234455555555444 78999999999998754
No 144
>PTZ00445 p36-lilke protein; Provisional
Probab=97.92 E-value=7.3e-05 Score=64.16 Aligned_cols=166 Identities=16% Similarity=0.074 Sum_probs=97.3
Q ss_pred hhhhhhccchhhHhhHHHHHHHHHHHHHhhhhcCCCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhc---C
Q 036571 63 GYLGHYMLGQQYREDSEAVAYEAIVYAQSLELAGDGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNK---G 139 (251)
Q Consensus 63 ~~v~~y~~~~~Y~~d~~~~~~~a~~~~~~~~~~~~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~---~ 139 (251)
..++.|....++.. ..--+.|..+.+.++ ..|.++|++|+|-||+.-- -|+ |.+.... -
T Consensus 11 ~~~~~~~~~~~~~~--~~~~~~~~~~v~~L~--~~GIk~Va~D~DnTlI~~H-------sgG-------~~~~~~~~~~~ 72 (219)
T PTZ00445 11 DAFKEYIESGLFDH--LNPHESADKFVDLLN--ECGIKVIASDFDLTMITKH-------SGG-------YIDPDNDDIRV 72 (219)
T ss_pred HHHHHHHHhccccc--CCHHHHHHHHHHHHH--HcCCeEEEecchhhhhhhh-------ccc-------ccCCCcchhhh
Confidence 34667777766653 222234444555554 4679999999999999720 010 1111000 0
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccc------------HHHHHHHHHhcCCCCc-ceEE------EeCC-C---
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQ------------RSVTENNLKNVGFYTW-ENLI------LKGS-S--- 196 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~------------r~~T~~~L~~~G~~~~-~~li------lr~~-~--- 196 (251)
-..+-|....+++.|++.|++|++||=.++.. .+.....|++-+...- ..++ -..+ .
T Consensus 73 ~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~ 152 (219)
T PTZ00445 73 LTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRP 152 (219)
T ss_pred hccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhhh
Confidence 12367889999999999999999999887532 2344455554433320 1111 0111 1
Q ss_pred -CCCCccccchHH-HHHHHHhcC--ccEEEEEcCCccccccc-cccCcEEEeCCC
Q 036571 197 -YSGETAVVYKSS-ERKRLEKKG--YRIIGNIGDQWSDLLGT-NAGNRTFKLPDP 246 (251)
Q Consensus 197 -~~~kp~~~~K~~-~r~~L~~~g--~~i~~~VGDq~sDi~ga-~~g~r~f~lPnp 246 (251)
.-.||.+..|+- .+.-+++.| +..+++|+|...-+.+| ..|..++-++++
T Consensus 153 ~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~NVeaA~~lGi~ai~f~~~ 207 (219)
T PTZ00445 153 LGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNNCKNALKEGYIALHVTGN 207 (219)
T ss_pred hcccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHHHHHHHHCCCEEEEcCCh
Confidence 124565655432 222333334 45699999999999888 468888888875
No 145
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=97.90 E-value=3.2e-05 Score=68.73 Aligned_cols=62 Identities=19% Similarity=0.247 Sum_probs=46.6
Q ss_pred CcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHH-CCCeEEEEeCCCcccHHHHHH
Q 036571 99 REIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLS-LGIKIVFLTGRPEDQRSVTEN 177 (251)
Q Consensus 99 ~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~-~G~~I~~vTnR~e~~r~~T~~ 177 (251)
...|+||+||||++..+ ......+-|.+.+.|+.|.+ .|+.++++|||+ .....+
T Consensus 14 ~~li~~D~DGTLl~~~~---------------------~p~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~---~~~~~~ 69 (266)
T PRK10187 14 NYAWFFDLDGTLAEIKP---------------------HPDQVVVPDNILQGLQLLATANDGALALISGRS---MVELDA 69 (266)
T ss_pred CEEEEEecCCCCCCCCC---------------------CcccccCCHHHHHHHHHHHhCCCCcEEEEeCCC---HHHHHH
Confidence 46899999999997421 01124567899999999998 799999999999 555566
Q ss_pred HHHhcCC
Q 036571 178 NLKNVGF 184 (251)
Q Consensus 178 ~L~~~G~ 184 (251)
++...++
T Consensus 70 ~~~~~~~ 76 (266)
T PRK10187 70 LAKPYRF 76 (266)
T ss_pred hcCcccc
Confidence 6655543
No 146
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=97.87 E-value=2.9e-05 Score=75.60 Aligned_cols=83 Identities=28% Similarity=0.330 Sum_probs=64.3
Q ss_pred CCCCchHHHHHHHHHHHCCC-eEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCc
Q 036571 140 EAPSLPESLKLYKKLLSLGI-KIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGY 218 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~-~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~ 218 (251)
.+++.|++.++++.|+++|+ +++++||++ +..+...++++|+..++.-.. +.-|....+++...+
T Consensus 360 ~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~---~~~a~~i~~~lgi~~~f~~~~----------p~~K~~~i~~l~~~~- 425 (536)
T TIGR01512 360 SDEPRPDAAEAIAELKALGIEKVVMLTGDR---RAVAERVARELGIDEVHAELL----------PEDKLEIVKELREKY- 425 (536)
T ss_pred eccchHHHHHHHHHHHHcCCCcEEEEcCCC---HHHHHHHHHHcCChhhhhccC----------cHHHHHHHHHHHhcC-
Confidence 47899999999999999999 999999998 668888889999976432111 123455556665554
Q ss_pred cEEEEEcCCccccccccc
Q 036571 219 RIIGNIGDQWSDLLGTNA 236 (251)
Q Consensus 219 ~i~~~VGDq~sDi~ga~~ 236 (251)
+.+++|||+.+|+.+...
T Consensus 426 ~~v~~vGDg~nD~~al~~ 443 (536)
T TIGR01512 426 GPVAMVGDGINDAPALAA 443 (536)
T ss_pred CEEEEEeCCHHHHHHHHh
Confidence 678999999999998753
No 147
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=97.82 E-value=4.9e-05 Score=66.49 Aligned_cols=60 Identities=20% Similarity=0.238 Sum_probs=46.2
Q ss_pred EEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHH
Q 036571 101 IWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLK 180 (251)
Q Consensus 101 avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~ 180 (251)
.|+.|+|||||+.. .+..+..|...++++.++++|+.++++|||+ ...+...++
T Consensus 3 li~tDlDGTLl~~~-----------------------~~~~~~~~~~~~~i~~~~~~gi~fv~aTGR~---~~~~~~~~~ 56 (249)
T TIGR01485 3 LLVSDLDNTLVDHT-----------------------DGDNQALLRLNALLEDHRGEDSLLVYSTGRS---PHSYKELQK 56 (249)
T ss_pred EEEEcCCCcCcCCC-----------------------CCChHHHHHHHHHHHHhhccCceEEEEcCCC---HHHHHHHHh
Confidence 67889999999731 0023456889999999999999999999999 555556666
Q ss_pred hcCCCC
Q 036571 181 NVGFYT 186 (251)
Q Consensus 181 ~~G~~~ 186 (251)
.+++..
T Consensus 57 ~~~~~~ 62 (249)
T TIGR01485 57 QKPLLT 62 (249)
T ss_pred cCCCCC
Confidence 677654
No 148
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=97.80 E-value=0.00022 Score=61.36 Aligned_cols=110 Identities=13% Similarity=0.071 Sum_probs=73.2
Q ss_pred CChHHHHHHHhc----CCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCCC-----
Q 036571 127 FNSTLFNEWVNK----GEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSSY----- 197 (251)
Q Consensus 127 ~~~~~~~~wv~~----~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~~----- 197 (251)
++...++++|.. ...+|-+-.+++|-.|+.++ ..+.||-+ +...++.|+++|+.+-|+.+..=+..
T Consensus 81 ~d~deY~~~V~~~LPlq~LkPD~~LRnlLL~l~~r~--k~~FTNa~---k~HA~r~Lk~LGieDcFegii~~e~~np~~~ 155 (244)
T KOG3109|consen 81 FDADEYHRFVHGRLPLQDLKPDPVLRNLLLSLKKRR--KWIFTNAY---KVHAIRILKKLGIEDCFEGIICFETLNPIEK 155 (244)
T ss_pred CCHHHHHHHhhccCcHhhcCCCHHHHHHHHhCcccc--EEEecCCc---HHHHHHHHHHhChHHhccceeEeeccCCCCC
Confidence 566777788765 34678888999999999886 67789988 78889999999998755444322111
Q ss_pred --CCCcccc-chHHHHHHHHhcCccEEEEEcCCcccccccc-ccCcEEE
Q 036571 198 --SGETAVV-YKSSERKRLEKKGYRIIGNIGDQWSDLLGTN-AGNRTFK 242 (251)
Q Consensus 198 --~~kp~~~-~K~~~r~~L~~~g~~i~~~VGDq~sDi~ga~-~g~r~f~ 242 (251)
--||.+. |....+.. .-..++-+.+++|+..-|++|. .|.+++.
T Consensus 156 ~~vcKP~~~afE~a~k~a-gi~~p~~t~FfDDS~~NI~~ak~vGl~tvl 203 (244)
T KOG3109|consen 156 TVVCKPSEEAFEKAMKVA-GIDSPRNTYFFDDSERNIQTAKEVGLKTVL 203 (244)
T ss_pred ceeecCCHHHHHHHHHHh-CCCCcCceEEEcCchhhHHHHHhccceeEE
Confidence 1244332 22222211 1112557899999999999884 5766543
No 149
>PLN02423 phosphomannomutase
Probab=97.78 E-value=7.2e-05 Score=65.67 Aligned_cols=45 Identities=22% Similarity=0.346 Sum_probs=36.5
Q ss_pred CCCcEEE-EecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCC
Q 036571 97 DGREIWI-FDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRP 168 (251)
Q Consensus 97 ~~~~avv-fDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~ 168 (251)
.++++++ |||||||+++. ...-|...+.+++|+++ +.++++|||.
T Consensus 4 ~~~~~i~~~D~DGTLl~~~--------------------------~~i~~~~~~ai~~l~~~-i~fviaTGR~ 49 (245)
T PLN02423 4 RKPGVIALFDVDGTLTAPR--------------------------KEATPEMLEFMKELRKV-VTVGVVGGSD 49 (245)
T ss_pred CccceEEEEeccCCCcCCC--------------------------CcCCHHHHHHHHHHHhC-CEEEEECCcC
Confidence 3567666 99999999752 23447789999999987 9999999996
No 150
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=97.77 E-value=0.00011 Score=72.01 Aligned_cols=82 Identities=27% Similarity=0.344 Sum_probs=61.6
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCcc
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYR 219 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~ 219 (251)
..++.|++.+++++|+++|++++++||.+ +......++.+|++ ++.... +.-|....+++...+ +
T Consensus 403 ~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~---~~~a~~ia~~lgi~-----~~~~~~------p~~K~~~v~~l~~~~-~ 467 (562)
T TIGR01511 403 EDQLRPEAKEVIQALKRRGIEPVMLTGDN---RKTAKAVAKELGIN-----VRAEVL------PDDKAALIKELQEKG-R 467 (562)
T ss_pred cccccHHHHHHHHHHHHcCCeEEEEcCCC---HHHHHHHHHHcCCc-----EEccCC------hHHHHHHHHHHHHcC-C
Confidence 37899999999999999999999999998 56777778888995 222111 123445555565544 5
Q ss_pred EEEEEcCCccccccccc
Q 036571 220 IIGNIGDQWSDLLGTNA 236 (251)
Q Consensus 220 i~~~VGDq~sDi~ga~~ 236 (251)
.+++|||..+|+.+...
T Consensus 468 ~v~~VGDg~nD~~al~~ 484 (562)
T TIGR01511 468 VVAMVGDGINDAPALAQ 484 (562)
T ss_pred EEEEEeCCCccHHHHhh
Confidence 68999999999988743
No 151
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.00029 Score=59.15 Aligned_cols=98 Identities=14% Similarity=0.054 Sum_probs=58.8
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHH-hcCCCC---c-ceEEEeCCCCC----CCccc--cchHH
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLK-NVGFYT---W-ENLILKGSSYS----GETAV--VYKSS 208 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~-~~G~~~---~-~~lilr~~~~~----~kp~~--~~K~~ 208 (251)
....-||.+++++..+++++++++||+..+..-....+++- +.-+.. . ....+..++.. ++..+ --|+.
T Consensus 71 ~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~dK~~ 150 (220)
T COG4359 71 DIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGHDKSS 150 (220)
T ss_pred hcccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecCceEcCCCceeeecCCccccCCCcch
Confidence 46778999999999999999999999987543222222221 111221 0 01122222110 11111 12665
Q ss_pred HHHHHHhcCccEEEEEcCCccccccccccC
Q 036571 209 ERKRLEKKGYRIIGNIGDQWSDLLGTNAGN 238 (251)
Q Consensus 209 ~r~~L~~~g~~i~~~VGDq~sDi~ga~~g~ 238 (251)
.-..+. +.++-+.+.||+.+|+.++....
T Consensus 151 vI~~l~-e~~e~~fy~GDsvsDlsaaklsD 179 (220)
T COG4359 151 VIHELS-EPNESIFYCGDSVSDLSAAKLSD 179 (220)
T ss_pred hHHHhh-cCCceEEEecCCcccccHhhhhh
Confidence 556665 45777999999999999996443
No 152
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=97.70 E-value=6.8e-05 Score=64.97 Aligned_cols=54 Identities=19% Similarity=0.189 Sum_probs=40.6
Q ss_pred EEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHh
Q 036571 102 WIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKN 181 (251)
Q Consensus 102 vvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~ 181 (251)
|++|+||||+++.+. ++...++++ ++++|+.++++|||+ .....+.|..
T Consensus 2 i~~DlDgTLl~~~~~---------------------------~~~~~~~~~-~~~~gi~~viaTGR~---~~~v~~~~~~ 50 (236)
T TIGR02471 2 IITDLDNTLLGDDEG---------------------------LASFVELLR-GSGDAVGFGIATGRS---VESAKSRYAK 50 (236)
T ss_pred eEEeccccccCCHHH---------------------------HHHHHHHHH-hcCCCceEEEEeCCC---HHHHHHHHHh
Confidence 789999999985321 112236666 689999999999999 6677777788
Q ss_pred cCCCC
Q 036571 182 VGFYT 186 (251)
Q Consensus 182 ~G~~~ 186 (251)
+++..
T Consensus 51 l~l~~ 55 (236)
T TIGR02471 51 LNLPS 55 (236)
T ss_pred CCCCC
Confidence 88753
No 153
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=97.70 E-value=0.00022 Score=63.53 Aligned_cols=73 Identities=18% Similarity=0.287 Sum_probs=60.2
Q ss_pred CCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHH
Q 036571 97 DGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTE 176 (251)
Q Consensus 97 ~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~ 176 (251)
..+..||||+|+||+.... ....+-|.+.+-+++|++.|.-+++-|-.. ++...
T Consensus 120 ~~phVIVfDlD~TLItd~~-----------------------~v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~---~eHV~ 173 (297)
T PF05152_consen 120 EPPHVIVFDLDSTLITDEG-----------------------DVRIRDPAVYDSLRELKEQGCVLVLWSYGN---REHVR 173 (297)
T ss_pred CCCcEEEEECCCcccccCC-----------------------ccccCChHHHHHHHHHHHcCCEEEEecCCC---HHHHH
Confidence 4567999999999997521 113466889999999999999999999988 77888
Q ss_pred HHHHhcCCCCcceEEEeCC
Q 036571 177 NNLKNVGFYTWENLILKGS 195 (251)
Q Consensus 177 ~~L~~~G~~~~~~lilr~~ 195 (251)
..|++.+++.+|++++++.
T Consensus 174 ~sl~~~~L~~~Fd~ii~~G 192 (297)
T PF05152_consen 174 HSLKELKLEGYFDIIICGG 192 (297)
T ss_pred HHHHHhCCccccEEEEeCC
Confidence 8899999999899888653
No 154
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=97.68 E-value=0.00011 Score=64.88 Aligned_cols=89 Identities=21% Similarity=0.360 Sum_probs=63.4
Q ss_pred CCcEEEEecCCCccCChhhHhh-----hcC------CCCCC--ChHHHHHHH----hcCCCCC-chHHHHHHHHHHHCCC
Q 036571 98 GREIWIFDIDETSLSNLPYYAK-----HGF------GVEPF--NSTLFNEWV----NKGEAPS-LPESLKLYKKLLSLGI 159 (251)
Q Consensus 98 ~~~avvfDIDgTlldn~~~~~~-----~~~------~~~~~--~~~~~~~wv----~~~~~~~-~pga~ell~~L~~~G~ 159 (251)
..--||||||+||+-...+... ..+ +.... -.+.+.+|+ ......+ =+.+.++++.|+++|+
T Consensus 19 ~~tLvvfDiDdTLi~~~~~lg~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~lie~~~~~~i~~lq~~~~ 98 (252)
T PF11019_consen 19 QDTLVVFDIDDTLITPKQPLGSPAWYQWQLGKLQKRGKSEYKAVECIFEEWLSLIFELRKMELIESDVPNIINSLQNKGI 98 (252)
T ss_pred CCeEEEEEcchhhhcCccccCCchhHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhhcceEEcchhHHHHHHHHHHCCC
Confidence 4457899999999965422111 001 10001 124456776 3344443 4779999999999999
Q ss_pred eEEEEeCCCcccHHHHHHHHHhcCCCC
Q 036571 160 KIVFLTGRPEDQRSVTENNLKNVGFYT 186 (251)
Q Consensus 160 ~I~~vTnR~e~~r~~T~~~L~~~G~~~ 186 (251)
+++-+|.|+...+..|.+.|+++|+..
T Consensus 99 ~v~alT~~~~~~~~~t~~~Lk~~gi~f 125 (252)
T PF11019_consen 99 PVIALTARGPNMEDWTLRELKSLGIDF 125 (252)
T ss_pred cEEEEcCCChhhHHHHHHHHHHCCCCc
Confidence 999999999999999999999999975
No 155
>COG4996 Predicted phosphatase [General function prediction only]
Probab=97.64 E-value=0.00031 Score=55.87 Aligned_cols=90 Identities=14% Similarity=0.156 Sum_probs=61.2
Q ss_pred cEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcC--CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHH
Q 036571 100 EIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKG--EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTEN 177 (251)
Q Consensus 100 ~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~--~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~ 177 (251)
.+|+||.|+||.|.-.... +. .||..-+=+.-.+.+ +...+|.++++++.++..|+-+...|=+. -....+
T Consensus 1 ~~i~~d~d~t~wdhh~iSs---l~-pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~---~~kA~~ 73 (164)
T COG4996 1 RAIVFDADKTLWDHHNISS---LE-PPFRRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNF---EDKAIK 73 (164)
T ss_pred CcEEEeCCCcccccccchh---cC-CcceecCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCc---hHHHHH
Confidence 3799999999998521110 00 112100000001111 35689999999999999999999999887 557789
Q ss_pred HHHhcCCCCcceEEEeCCC
Q 036571 178 NLKNVGFYTWENLILKGSS 196 (251)
Q Consensus 178 ~L~~~G~~~~~~lilr~~~ 196 (251)
.|+.+|+..+|+.++-...
T Consensus 74 aLral~~~~yFhy~ViePh 92 (164)
T COG4996 74 ALRALDLLQYFHYIVIEPH 92 (164)
T ss_pred HHHHhchhhhEEEEEecCC
Confidence 9999999999987776543
No 156
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=97.50 E-value=0.00033 Score=72.14 Aligned_cols=92 Identities=18% Similarity=0.293 Sum_probs=67.3
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCCC-----------------CCCcc
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSSY-----------------SGETA 202 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~~-----------------~~kp~ 202 (251)
.+++.|++.+.++.|+++|+++.++||.. ...+....++.|+...+...+.+..- -....
T Consensus 526 ~Dp~r~~~~~~i~~l~~~Gi~v~miTGD~---~~tA~~ia~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~ 602 (884)
T TIGR01522 526 NDPPRPGVKEAVTTLITGGVRIIMITGDS---QETAVSIARRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVFARAS 602 (884)
T ss_pred cCcchhHHHHHHHHHHHCCCeEEEECCCC---HHHHHHHHHHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEEEECC
Confidence 36899999999999999999999999998 55666667788997543322222110 01123
Q ss_pred ccchHHHHHHHHhcCccEEEEEcCCcccccccc
Q 036571 203 VVYKSSERKRLEKKGYRIIGNIGDQWSDLLGTN 235 (251)
Q Consensus 203 ~~~K~~~r~~L~~~g~~i~~~VGDq~sDi~ga~ 235 (251)
|..|..+-+.+++.|+ +++++||..+|..+.+
T Consensus 603 P~~K~~iv~~lq~~g~-~v~mvGDGvND~pAl~ 634 (884)
T TIGR01522 603 PEHKMKIVKALQKRGD-VVAMTGDGVNDAPALK 634 (884)
T ss_pred HHHHHHHHHHHHHCCC-EEEEECCCcccHHHHH
Confidence 4567777778887774 6899999999998764
No 157
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=97.49 E-value=0.00034 Score=65.56 Aligned_cols=122 Identities=21% Similarity=0.221 Sum_probs=83.4
Q ss_pred CCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHH
Q 036571 97 DGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTE 176 (251)
Q Consensus 97 ~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~ 176 (251)
...+.||+|||||+.-+...- .-.-..++.=---|+..|+......||+|.++|+|+-.+...|.
T Consensus 373 ~n~kiVVsDiDGTITkSD~~G---------------hv~~miGkdwth~gVAkLYtdI~rNGYkI~YltsR~~Gqa~sTr 437 (580)
T COG5083 373 NNKKIVVSDIDGTITKSDALG---------------HVKQMIGKDWTHNGVAKLYTDIDRNGYKIKYLTSRSYGQADSTR 437 (580)
T ss_pred CCCcEEEEecCCcEEehhhHH---------------HHHHHhccchhhcchhhhhhhhccCceEEEEEecccccchhhhh
Confidence 345789999999999874210 00001123333457888899999999999999999988877776
Q ss_pred HHHH---hcCCCCcc-eEEEeCCCC---------CCCccccchHHHHHHHHhcCccE---EEEEcCCccccccc
Q 036571 177 NNLK---NVGFYTWE-NLILKGSSY---------SGETAVVYKSSERKRLEKKGYRI---IGNIGDQWSDLLGT 234 (251)
Q Consensus 177 ~~L~---~~G~~~~~-~lilr~~~~---------~~kp~~~~K~~~r~~L~~~g~~i---~~~VGDq~sDi~ga 234 (251)
.-|+ +-|+.-|+ .++|+++.. -+|| -.||.+..+.|...+... .+=+|...+|+..-
T Consensus 438 sylrnieQngykLpdgpviLspd~t~aal~relIlrkp-E~FKiayLndl~slf~e~~PFyAGFGNriTDvisY 510 (580)
T COG5083 438 SYLRNIEQNGYKLPDGPVILSPDRTMAALYRELILRKP-EVFKIAYLNDLKSLFIEFDPFYAGFGNRITDVISY 510 (580)
T ss_pred hHHHhhhhcCccCCCCCEeeccchhhhhhhhhhhhcCh-HHHHHHHHHHHHHhhCcCChhhccccccchhheee
Confidence 5554 45776654 678877631 1333 257888888888766542 34588888888775
No 158
>PLN03017 trehalose-phosphatase
Probab=97.41 E-value=0.00068 Score=62.92 Aligned_cols=58 Identities=19% Similarity=0.094 Sum_probs=42.4
Q ss_pred CCCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHH
Q 036571 96 GDGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVT 175 (251)
Q Consensus 96 ~~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T 175 (251)
..+...++||+||||+.-.. ....+.+-|++.+.|+.|. +|+.++++|||+ +...
T Consensus 108 ~~k~~llflD~DGTL~Piv~---------------------~p~~a~i~~~~~~aL~~La-~~~~vaIvSGR~---~~~l 162 (366)
T PLN03017 108 RGKQIVMFLDYDGTLSPIVD---------------------DPDKAFMSSKMRRTVKKLA-KCFPTAIVTGRC---IDKV 162 (366)
T ss_pred cCCCeEEEEecCCcCcCCcC---------------------CcccccCCHHHHHHHHHHh-cCCcEEEEeCCC---HHHH
Confidence 45567888899999994110 0112467899999999999 789999999999 4444
Q ss_pred HHH
Q 036571 176 ENN 178 (251)
Q Consensus 176 ~~~ 178 (251)
.+.
T Consensus 163 ~~~ 165 (366)
T PLN03017 163 YNF 165 (366)
T ss_pred HHh
Confidence 444
No 159
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=97.39 E-value=0.00063 Score=66.47 Aligned_cols=128 Identities=27% Similarity=0.320 Sum_probs=84.9
Q ss_pred cEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHH
Q 036571 100 EIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNL 179 (251)
Q Consensus 100 ~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L 179 (251)
+.||-|||||+..+.-+= |.+ + ..+++=.--|+.+|+...+++||++.|+|.|.-.+...|..-|
T Consensus 531 kIVISDIDGTITKSDvLG--h~l---p----------~iGkDWTh~GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL 595 (738)
T KOG2116|consen 531 KIVISDIDGTITKSDVLG--HVL---P----------MIGKDWTHTGVAKLYTKIKENGYKILYLSARAIGQADSTRQYL 595 (738)
T ss_pred cEEEecCCCceEhhhhhh--hhh---h----------hhcCcchhhhHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHH
Confidence 468889999999763210 001 0 1123334568999999999999999999999988887777666
Q ss_pred Hh---cCCCCc-ceEEEeCCCC---------CCCccccchHHHHHHHHhc---Ccc-EEEEEcCCcccccccc-cc---C
Q 036571 180 KN---VGFYTW-ENLILKGSSY---------SGETAVVYKSSERKRLEKK---GYR-IIGNIGDQWSDLLGTN-AG---N 238 (251)
Q Consensus 180 ~~---~G~~~~-~~lilr~~~~---------~~kp~~~~K~~~r~~L~~~---g~~-i~~~VGDq~sDi~ga~-~g---~ 238 (251)
+. -|..-. ..++++++.. .+||. .||.+....|+.. .++ -.+-+|...+|...-. .| .
T Consensus 596 ~nv~QdG~~LPdGPViLSPd~lf~Al~REVI~RkPe-~FKIAcL~DIk~LF~p~~nPFYAgFGNR~TDviSY~~VgVP~~ 674 (738)
T KOG2116|consen 596 KNVEQDGKKLPDGPVILSPDSLFAALHREVIERKPE-VFKIACLTDIKNLFPPSGNPFYAGFGNRITDVISYRQVGVPLS 674 (738)
T ss_pred HHHhhcCccCCCCCEEeCCCcchHHHHHHHHHcCch-hhhHHHHHHHHHhcCCCCCceeeecCCCcccceeeeeecCCcc
Confidence 55 454332 4788888752 24442 5787777777642 222 3567899999987752 12 4
Q ss_pred cEEEe
Q 036571 239 RTFKL 243 (251)
Q Consensus 239 r~f~l 243 (251)
|.|.+
T Consensus 675 RIFtI 679 (738)
T KOG2116|consen 675 RIFTI 679 (738)
T ss_pred ceEEE
Confidence 66654
No 160
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=97.38 E-value=6.4e-05 Score=65.59 Aligned_cols=96 Identities=22% Similarity=0.260 Sum_probs=59.3
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEE--EeCCC-CCCCccccchHHHHHHHHhcCcc
Q 036571 143 SLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLI--LKGSS-YSGETAVVYKSSERKRLEKKGYR 219 (251)
Q Consensus 143 ~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~li--lr~~~-~~~kp~~~~K~~~r~~L~~~g~~ 219 (251)
-++++.++++.|+++|+++ ++||++..... ..+...|...++..+ ...+. ..+||.+..-....+.+.....+
T Consensus 139 ~~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~---~~~~~~~~g~~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~ 214 (242)
T TIGR01459 139 DLDEFDELFAPIVARKIPN-ICANPDRGINQ---HGIYRYGAGYYAELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKN 214 (242)
T ss_pred CHHHHHHHHHHHHhCCCcE-EEECCCEeccC---CCceEecccHHHHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcc
Confidence 4799999999999999997 88999854322 234445544333322 22222 35777665333333333211124
Q ss_pred EEEEEcCC-cccccccc-ccCcEEE
Q 036571 220 IIGNIGDQ-WSDLLGTN-AGNRTFK 242 (251)
Q Consensus 220 i~~~VGDq-~sDi~ga~-~g~r~f~ 242 (251)
.+++|||+ .+|+.+|. +|.+++-
T Consensus 215 ~~~~vGD~~~~Di~~a~~~G~~~i~ 239 (242)
T TIGR01459 215 RMLMVGDSFYTDILGANRLGIDTAL 239 (242)
T ss_pred cEEEECCCcHHHHHHHHHCCCeEEE
Confidence 58999999 59999994 5766543
No 161
>PLN02151 trehalose-phosphatase
Probab=97.24 E-value=0.001 Score=61.51 Aligned_cols=61 Identities=16% Similarity=0.133 Sum_probs=45.9
Q ss_pred cCCCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHH
Q 036571 95 AGDGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSV 174 (251)
Q Consensus 95 ~~~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~ 174 (251)
...+..+++||+||||+.-.+ ....+.+-|++++.|+.|. ++..++++|||+ ++.
T Consensus 94 ~~~~~~ll~lDyDGTL~PIv~---------------------~P~~A~~~~~~~~aL~~La-~~~~vaIvSGR~---~~~ 148 (354)
T PLN02151 94 SEGKQIVMFLDYDGTLSPIVD---------------------DPDRAFMSKKMRNTVRKLA-KCFPTAIVSGRC---REK 148 (354)
T ss_pred hcCCceEEEEecCccCCCCCC---------------------CcccccCCHHHHHHHHHHh-cCCCEEEEECCC---HHH
Confidence 345667899999999995311 0123578899999999999 557999999999 666
Q ss_pred HHHHHH
Q 036571 175 TENNLK 180 (251)
Q Consensus 175 T~~~L~ 180 (251)
..+++.
T Consensus 149 l~~~~~ 154 (354)
T PLN02151 149 VSSFVK 154 (354)
T ss_pred HHHHcC
Confidence 666664
No 162
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=97.22 E-value=0.0007 Score=68.32 Aligned_cols=63 Identities=21% Similarity=0.273 Sum_probs=48.4
Q ss_pred CCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHC-CCeEEEEeCCCcccHHHH
Q 036571 97 DGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSL-GIKIVFLTGRPEDQRSVT 175 (251)
Q Consensus 97 ~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~-G~~I~~vTnR~e~~r~~T 175 (251)
.+.+.++||+||||++.... .....+-+.+.+.|+.|.+. |..|+++|||+ +...
T Consensus 490 ~~~rLi~~D~DGTL~~~~~~---------------------~~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~---~~~l 545 (726)
T PRK14501 490 ASRRLLLLDYDGTLVPFAPD---------------------PELAVPDKELRDLLRRLAADPNTDVAIISGRD---RDTL 545 (726)
T ss_pred ccceEEEEecCccccCCCCC---------------------cccCCCCHHHHHHHHHHHcCCCCeEEEEeCCC---HHHH
Confidence 45689999999999985210 11245678999999999994 99999999999 6666
Q ss_pred HHHHHhcC
Q 036571 176 ENNLKNVG 183 (251)
Q Consensus 176 ~~~L~~~G 183 (251)
.+++...+
T Consensus 546 ~~~~~~~~ 553 (726)
T PRK14501 546 ERWFGDLP 553 (726)
T ss_pred HHHhCCCC
Confidence 66666544
No 163
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=97.17 E-value=0.0014 Score=66.35 Aligned_cols=81 Identities=20% Similarity=0.184 Sum_probs=61.8
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCcc
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYR 219 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~ 219 (251)
.+++.|++.+.++.|+++|++++++||.. +..+....+++|+..+.. . .|.-|...-+++++. .
T Consensus 566 ~d~~r~~a~~~i~~L~~~gi~~~llTGd~---~~~a~~ia~~lgi~~~~~-----~------~p~~K~~~v~~l~~~--~ 629 (741)
T PRK11033 566 QDTLRADARQAISELKALGIKGVMLTGDN---PRAAAAIAGELGIDFRAG-----L------LPEDKVKAVTELNQH--A 629 (741)
T ss_pred ecCCchhHHHHHHHHHHCCCEEEEEcCCC---HHHHHHHHHHcCCCeecC-----C------CHHHHHHHHHHHhcC--C
Confidence 36899999999999999999999999998 667777888899963221 1 123455566666643 3
Q ss_pred EEEEEcCCccccccccc
Q 036571 220 IIGNIGDQWSDLLGTNA 236 (251)
Q Consensus 220 i~~~VGDq~sDi~ga~~ 236 (251)
.+++|||..+|..+...
T Consensus 630 ~v~mvGDgiNDapAl~~ 646 (741)
T PRK11033 630 PLAMVGDGINDAPAMKA 646 (741)
T ss_pred CEEEEECCHHhHHHHHh
Confidence 68999999999887643
No 164
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=97.15 E-value=0.00084 Score=58.70 Aligned_cols=50 Identities=24% Similarity=0.327 Sum_probs=38.9
Q ss_pred CCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHC-CCeEEEEeCCC
Q 036571 98 GREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSL-GIKIVFLTGRP 168 (251)
Q Consensus 98 ~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~-G~~I~~vTnR~ 168 (251)
++.+++||+||||....+ ....+.+-|++.++|+.|.+. +..|+++|||+
T Consensus 2 ~~~~l~lD~DGTL~~~~~---------------------~p~~~~~~~~~~~~L~~L~~~~~~~v~ivSGR~ 52 (244)
T TIGR00685 2 RKRAFFFDYDGTLSEIVP---------------------DPDAAVVSDRLLTILQKLAARPHNAIWIISGRK 52 (244)
T ss_pred CcEEEEEecCccccCCcC---------------------CCcccCCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 457899999999997421 011356789999999999877 56789999997
No 165
>PLN02580 trehalose-phosphatase
Probab=97.12 E-value=0.0018 Score=60.59 Aligned_cols=61 Identities=13% Similarity=0.082 Sum_probs=47.3
Q ss_pred CCCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHH
Q 036571 96 GDGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVT 175 (251)
Q Consensus 96 ~~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T 175 (251)
..+..+++||.||||..-.+ ....+.+-|++++.|+.|.+. .+++|||||+ ++..
T Consensus 116 ~~k~~~LfLDyDGTLaPIv~---------------------~Pd~A~~s~~~~~aL~~La~~-~~VAIVSGR~---~~~L 170 (384)
T PLN02580 116 KGKKIALFLDYDGTLSPIVD---------------------DPDRALMSDAMRSAVKNVAKY-FPTAIISGRS---RDKV 170 (384)
T ss_pred hcCCeEEEEecCCccCCCCC---------------------CcccccCCHHHHHHHHHHhhC-CCEEEEeCCC---HHHH
Confidence 34567888999999986321 112467889999999999998 5899999999 7777
Q ss_pred HHHHHh
Q 036571 176 ENNLKN 181 (251)
Q Consensus 176 ~~~L~~ 181 (251)
.++|.-
T Consensus 171 ~~~l~~ 176 (384)
T PLN02580 171 YELVGL 176 (384)
T ss_pred HHHhCC
Confidence 777754
No 166
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=97.07 E-value=0.00045 Score=61.63 Aligned_cols=98 Identities=14% Similarity=0.058 Sum_probs=57.0
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEe---CC-CCCCCccccchHHHHHHHHhcC
Q 036571 142 PSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILK---GS-SYSGETAVVYKSSERKRLEKKG 217 (251)
Q Consensus 142 ~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr---~~-~~~~kp~~~~K~~~r~~L~~~g 217 (251)
-.++++.++++.|+++|. ++++||++.... ....+...|...++..+.. .. ...+||.+..-....+.+. ..
T Consensus 143 ~~y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~--~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~-~~ 218 (279)
T TIGR01452 143 FSYAKLREACAHLREPGC-LFVATNRDPWHP--LSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENFS-ID 218 (279)
T ss_pred CCHHHHHHHHHHHhcCCC-EEEEeCCCCCCC--CcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHhC-CC
Confidence 357899999999999997 789999884321 0111222233222222211 11 1246777643222223331 12
Q ss_pred ccEEEEEcCCc-cccccc-cccCcEEEe
Q 036571 218 YRIIGNIGDQW-SDLLGT-NAGNRTFKL 243 (251)
Q Consensus 218 ~~i~~~VGDq~-sDi~ga-~~g~r~f~l 243 (251)
.+.+++|||+. +||.+| ++|.+++.+
T Consensus 219 ~~~~lmIGD~~~tDI~~A~~aGi~si~V 246 (279)
T TIGR01452 219 PARTLMVGDRLETDILFGHRCGMTTVLV 246 (279)
T ss_pred hhhEEEECCChHHHHHHHHHcCCcEEEE
Confidence 35689999995 999998 457766543
No 167
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=97.06 E-value=0.0016 Score=58.01 Aligned_cols=61 Identities=20% Similarity=0.192 Sum_probs=48.2
Q ss_pred CCCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCC-CeEEEEeCCCcccHHH
Q 036571 96 GDGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLG-IKIVFLTGRPEDQRSV 174 (251)
Q Consensus 96 ~~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G-~~I~~vTnR~e~~r~~ 174 (251)
..++++++||.||||.+-.++ ...+++.++++++|+.|.++. -.++++|||+ .+.
T Consensus 15 ~a~~~~~~lDyDGTl~~i~~~---------------------p~~a~~~~~l~~lL~~Las~~~~~v~iiSGR~---~~~ 70 (266)
T COG1877 15 NARKRLLFLDYDGTLTEIVPH---------------------PEAAVPDDRLLSLLQDLASDPRNVVAIISGRS---LAE 70 (266)
T ss_pred cccceEEEEeccccccccccC---------------------ccccCCCHHHHHHHHHHHhcCCCeEEEEeCCC---HHH
Confidence 457889999999999986431 124789999999999999983 4799999999 555
Q ss_pred HHHHHH
Q 036571 175 TENNLK 180 (251)
Q Consensus 175 T~~~L~ 180 (251)
..+++.
T Consensus 71 l~~~~~ 76 (266)
T COG1877 71 LERLFG 76 (266)
T ss_pred HHHhcC
Confidence 555654
No 168
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.05 E-value=0.0015 Score=65.54 Aligned_cols=80 Identities=26% Similarity=0.333 Sum_probs=61.0
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCcc
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYR 219 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~ 219 (251)
.+++.|++.+.++.|+++|++++++||-. +......=+++|+..+. .+- .|+-|...-++|++.| +
T Consensus 535 ~D~~R~~a~~aI~~L~~~Gi~~~mLTGDn---~~~A~~iA~~lGId~v~----Ael------lPedK~~~V~~l~~~g-~ 600 (713)
T COG2217 535 ADELRPDAKEAIAALKALGIKVVMLTGDN---RRTAEAIAKELGIDEVR----AEL------LPEDKAEIVRELQAEG-R 600 (713)
T ss_pred eCCCChhHHHHHHHHHHCCCeEEEEcCCC---HHHHHHHHHHcChHhhe----ccC------CcHHHHHHHHHHHhcC-C
Confidence 37899999999999999999999999987 44555555678995421 111 1245778888888766 5
Q ss_pred EEEEEcCCcccccc
Q 036571 220 IIGNIGDQWSDLLG 233 (251)
Q Consensus 220 i~~~VGDq~sDi~g 233 (251)
.+++|||..||-.+
T Consensus 601 ~VamVGDGINDAPA 614 (713)
T COG2217 601 KVAMVGDGINDAPA 614 (713)
T ss_pred EEEEEeCCchhHHH
Confidence 68999999999765
No 169
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=97.04 E-value=0.00057 Score=55.54 Aligned_cols=119 Identities=14% Similarity=0.111 Sum_probs=61.7
Q ss_pred cEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHH
Q 036571 100 EIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNL 179 (251)
Q Consensus 100 ~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L 179 (251)
+.+|||+||||+.+...... +.+.. ...-.........||+.+||+.|.+. +.|++.|+.++.......+.|
T Consensus 1 k~LVlDLD~TLv~~~~~~~~------~~~~~-~~~~~~~~~v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~~~l 72 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPL------PYDFK-IIDQRGGYYVKLRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVLDAL 72 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCT------T-SEE-EETEEEEEEEEE-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHHHHH
T ss_pred CEEEEeCCCcEEEEeecCCC------Ccccc-eeccccceeEeeCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHHHhh
Confidence 57999999999987432100 00000 00000001134689999999999555 999999999977666667777
Q ss_pred HhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcC--ccEEEEEcCCcccccc
Q 036571 180 KNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKG--YRIIGNIGDQWSDLLG 233 (251)
Q Consensus 180 ~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g--~~i~~~VGDq~sDi~g 233 (251)
...+-.. ...+.+..-...+. .+. +.|...| ..-++.|+|+..-+..
T Consensus 73 dp~~~~~-~~~~~r~~~~~~~~--~~~----KdL~~l~~~~~~vvivDD~~~~~~~ 121 (159)
T PF03031_consen 73 DPNGKLF-SRRLYRDDCTFDKG--SYI----KDLSKLGRDLDNVVIVDDSPRKWAL 121 (159)
T ss_dssp TTTTSSE-EEEEEGGGSEEETT--EEE------GGGSSS-GGGEEEEES-GGGGTT
T ss_pred hhhcccc-cccccccccccccc--ccc----cchHHHhhccccEEEEeCCHHHeec
Confidence 6432211 34444433211110 111 3444444 3567889999875543
No 170
>PLN02382 probable sucrose-phosphatase
Probab=97.01 E-value=0.0025 Score=60.24 Aligned_cols=65 Identities=25% Similarity=0.251 Sum_probs=43.3
Q ss_pred CCCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHH
Q 036571 96 GDGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVT 175 (251)
Q Consensus 96 ~~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T 175 (251)
+..+-.|+.|||||||++.. .+....+....+++.+.++|+.++++|||+ ....
T Consensus 6 ~~~~~lI~sDLDGTLL~~~~-----------------------~~~~s~~~~~~l~~~~~~~gi~fv~aTGR~---~~~~ 59 (413)
T PLN02382 6 GSPRLMIVSDLDHTMVDHHD-----------------------PENLSLLRFNALWEAEYRHDSLLVFSTGRS---PTLY 59 (413)
T ss_pred CCCCEEEEEcCCCcCcCCCC-----------------------ccchhHHHHHHHHHHhhcCCeeEEEEcCCC---HHHH
Confidence 34456788899999997510 011222344455578899999999999999 4455
Q ss_pred HHHHHhcCCCC
Q 036571 176 ENNLKNVGFYT 186 (251)
Q Consensus 176 ~~~L~~~G~~~ 186 (251)
.+.++.+++..
T Consensus 60 ~~l~~~~~l~~ 70 (413)
T PLN02382 60 KELRKEKPLLT 70 (413)
T ss_pred HHHHHhCCCCC
Confidence 55555666654
No 171
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=96.98 E-value=0.0023 Score=57.97 Aligned_cols=63 Identities=24% Similarity=0.256 Sum_probs=47.1
Q ss_pred CCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHC----CCeEEEEeCCCccc-
Q 036571 97 DGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSL----GIKIVFLTGRPEDQ- 171 (251)
Q Consensus 97 ~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~----G~~I~~vTnR~e~~- 171 (251)
...=+++|||||+|+.. ..++|++.+.++.|.+. .++.+|+||..--.
T Consensus 33 ~~~fgfafDIDGVL~RG---------------------------~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E 85 (389)
T KOG1618|consen 33 PPTFGFAFDIDGVLFRG---------------------------HRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILE 85 (389)
T ss_pred CCceeEEEecccEEEec---------------------------CCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcch
Confidence 44568999999999874 67999999999999988 89999999986332
Q ss_pred HHHHHHHHHhcCCCC
Q 036571 172 RSVTENNLKNVGFYT 186 (251)
Q Consensus 172 r~~T~~~L~~~G~~~ 186 (251)
+..+.+.=..+|+..
T Consensus 86 ~~rA~~lS~~Lgv~V 100 (389)
T KOG1618|consen 86 SSRAQELSALLGVEV 100 (389)
T ss_pred hhHHHHHHHhhCCcc
Confidence 222333333467764
No 172
>PRK10671 copA copper exporting ATPase; Provisional
Probab=96.97 E-value=0.0024 Score=65.41 Aligned_cols=82 Identities=26% Similarity=0.367 Sum_probs=61.6
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCcc
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYR 219 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~ 219 (251)
.+++.|++.+.++.|++.|++++++||.+ +..+...++++|+.. ++ .... |..|....+++...| .
T Consensus 648 ~d~~r~~a~~~i~~L~~~gi~v~~~Tgd~---~~~a~~ia~~lgi~~---~~-~~~~------p~~K~~~i~~l~~~~-~ 713 (834)
T PRK10671 648 RDPLRSDSVAALQRLHKAGYRLVMLTGDN---PTTANAIAKEAGIDE---VI-AGVL------PDGKAEAIKRLQSQG-R 713 (834)
T ss_pred cCcchhhHHHHHHHHHHCCCeEEEEcCCC---HHHHHHHHHHcCCCE---EE-eCCC------HHHHHHHHHHHhhcC-C
Confidence 36789999999999999999999999988 556667778889964 22 1111 233555666666554 4
Q ss_pred EEEEEcCCcccccccc
Q 036571 220 IIGNIGDQWSDLLGTN 235 (251)
Q Consensus 220 i~~~VGDq~sDi~ga~ 235 (251)
.+++|||..+|+.+..
T Consensus 714 ~v~~vGDg~nD~~al~ 729 (834)
T PRK10671 714 QVAMVGDGINDAPALA 729 (834)
T ss_pred EEEEEeCCHHHHHHHH
Confidence 6899999999998864
No 173
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=96.95 E-value=0.0027 Score=65.93 Aligned_cols=91 Identities=19% Similarity=0.272 Sum_probs=63.7
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCCC-----------------CCCcc
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSSY-----------------SGETA 202 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~~-----------------~~kp~ 202 (251)
.+++.|++.+.++.|++.|+++.++||-.. .....-=++.|+......++.+.+. -..-.
T Consensus 577 ~Dplr~~~~~aI~~l~~aGI~v~miTGD~~---~tA~~iA~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~Vfar~s 653 (941)
T TIGR01517 577 KDPLRPGVREAVQECQRAGITVRMVTGDNI---DTAKAIARNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRVLARSS 653 (941)
T ss_pred cCCCchhHHHHHHHHHHCCCEEEEECCCCh---HHHHHHHHHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeEEEECC
Confidence 479999999999999999999999999873 3333334557886422233332210 01113
Q ss_pred ccchHHHHHHHHhcCccEEEEEcCCccccccc
Q 036571 203 VVYKSSERKRLEKKGYRIIGNIGDQWSDLLGT 234 (251)
Q Consensus 203 ~~~K~~~r~~L~~~g~~i~~~VGDq~sDi~ga 234 (251)
|..|..+-+.+++.|+ +++++||..||..+-
T Consensus 654 Pe~K~~iV~~lq~~g~-vVam~GDGvNDapAL 684 (941)
T TIGR01517 654 PLDKQLLVLMLKDMGE-VVAVTGDGTNDAPAL 684 (941)
T ss_pred HHHHHHHHHHHHHCCC-EEEEECCCCchHHHH
Confidence 4567788888888887 789999999998653
No 174
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=96.92 E-value=0.0044 Score=61.99 Aligned_cols=81 Identities=17% Similarity=0.200 Sum_probs=61.6
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCcc
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYR 219 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~ 219 (251)
.+++.|++.+.++.|++.|+++.++||.. .......-+++|+.. ++ .+. .|+.|...-+++++.|.
T Consensus 444 ~D~~Rp~a~eaI~~l~~~Gi~v~miTGD~---~~ta~~iA~~lGI~~---v~-a~~------~PedK~~~v~~lq~~g~- 509 (675)
T TIGR01497 444 KDIVKGGIKERFAQLRKMGIKTIMITGDN---RLTAAAIAAEAGVDD---FI-AEA------TPEDKIALIRQEQAEGK- 509 (675)
T ss_pred cccchhHHHHHHHHHHHCCCEEEEEcCCC---HHHHHHHHHHcCCCE---EE-cCC------CHHHHHHHHHHHHHcCC-
Confidence 47999999999999999999999999987 445555566789853 22 211 23457777777776664
Q ss_pred EEEEEcCCccccccc
Q 036571 220 IIGNIGDQWSDLLGT 234 (251)
Q Consensus 220 i~~~VGDq~sDi~ga 234 (251)
+++++||..||..+-
T Consensus 510 ~VamvGDG~NDapAL 524 (675)
T TIGR01497 510 LVAMTGDGTNDAPAL 524 (675)
T ss_pred eEEEECCCcchHHHH
Confidence 689999999998764
No 175
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=96.89 E-value=0.0024 Score=65.62 Aligned_cols=59 Identities=12% Similarity=0.209 Sum_probs=46.7
Q ss_pred CCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHH-HHCCCeEEEEeCCCcccHHHH
Q 036571 97 DGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKL-LSLGIKIVFLTGRPEDQRSVT 175 (251)
Q Consensus 97 ~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L-~~~G~~I~~vTnR~e~~r~~T 175 (251)
.+++++++|+||||+...+. ...+-|++.++|+.| .+.|..++++|||+ ++..
T Consensus 594 ~~~rlI~LDyDGTLlp~~~~-----------------------~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~---~~~L 647 (854)
T PLN02205 594 TTTRAILLDYDGTLMPQASI-----------------------DKSPSSKSIDILNTLCRDKNNMVFIVSARS---RKTL 647 (854)
T ss_pred hcCeEEEEecCCcccCCccc-----------------------cCCCCHHHHHHHHHHHhcCCCEEEEEeCCC---HHHH
Confidence 35789999999999975210 245668999999998 77899999999999 6677
Q ss_pred HHHHHh
Q 036571 176 ENNLKN 181 (251)
Q Consensus 176 ~~~L~~ 181 (251)
.++|..
T Consensus 648 ~~~f~~ 653 (854)
T PLN02205 648 ADWFSP 653 (854)
T ss_pred HHHhCC
Confidence 777744
No 176
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=96.85 E-value=0.0055 Score=61.37 Aligned_cols=80 Identities=20% Similarity=0.226 Sum_probs=60.2
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCcc
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYR 219 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~ 219 (251)
.+++.|++.+.+++|++.|++++++||-.. .....-=++.|+.. ++ ... .|+.|...-+.+++.|+
T Consensus 439 ~Dp~R~~a~e~I~~Lr~~GI~vvMiTGDn~---~TA~aIA~elGI~~---v~-A~~------~PedK~~iV~~lQ~~G~- 504 (673)
T PRK14010 439 KDVIKDGLVERFRELREMGIETVMCTGDNE---LTAATIAKEAGVDR---FV-AEC------KPEDKINVIREEQAKGH- 504 (673)
T ss_pred ecCCcHHHHHHHHHHHHCCCeEEEECCCCH---HHHHHHHHHcCCce---EE-cCC------CHHHHHHHHHHHHhCCC-
Confidence 479999999999999999999999999873 33334445679853 22 211 23567777788887764
Q ss_pred EEEEEcCCcccccc
Q 036571 220 IIGNIGDQWSDLLG 233 (251)
Q Consensus 220 i~~~VGDq~sDi~g 233 (251)
+++++||..||-.+
T Consensus 505 ~VaMtGDGvNDAPA 518 (673)
T PRK14010 505 IVAMTGDGTNDAPA 518 (673)
T ss_pred EEEEECCChhhHHH
Confidence 68999999999765
No 177
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=96.85 E-value=0.0042 Score=64.96 Aligned_cols=91 Identities=22% Similarity=0.231 Sum_probs=64.0
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcc------------------------eEEEeCC
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWE------------------------NLILKGS 195 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~------------------------~lilr~~ 195 (251)
.+|+.|++.+.++.|+++|+++.++|||. ........++.|+-... .+++.+.
T Consensus 566 ~Dplr~~v~~aI~~l~~~Gi~v~~~TGd~---~~ta~~ia~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G~ 642 (997)
T TIGR01106 566 IDPPRAAVPDAVGKCRSAGIKVIMVTGDH---PITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGS 642 (997)
T ss_pred cCCChHHHHHHHHHHHHCCCeEEEECCCC---HHHHHHHHHHcCCCCCCccchhhhhhhccccccccccccccceEEEhH
Confidence 47999999999999999999999999999 44555556667773210 1333332
Q ss_pred CCC-------------------CCccccchHHHHHHHHhcCccEEEEEcCCccccccc
Q 036571 196 SYS-------------------GETAVVYKSSERKRLEKKGYRIIGNIGDQWSDLLGT 234 (251)
Q Consensus 196 ~~~-------------------~kp~~~~K~~~r~~L~~~g~~i~~~VGDq~sDi~ga 234 (251)
.-. ..-.|..|..+-+.+++.|+ +++++||..+|..+-
T Consensus 643 ~l~~l~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq~~g~-vv~~~GDG~ND~paL 699 (997)
T TIGR01106 643 DLKDMTSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQRQGA-IVAVTGDGVNDSPAL 699 (997)
T ss_pred HhhhCCHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHHHCCC-EEEEECCCcccHHHH
Confidence 100 11123457777778888887 789999999997653
No 178
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=96.78 E-value=0.0045 Score=49.36 Aligned_cols=81 Identities=19% Similarity=0.281 Sum_probs=59.8
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCccE
Q 036571 141 APSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRI 220 (251)
Q Consensus 141 ~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i 220 (251)
...++.+.+.+++|++. +.|++.|+-. .-...+.++-.|++. .. ++...+ +.-|..+..+|.+ .|..
T Consensus 29 Gklf~ev~e~iqeL~d~-V~i~IASgDr---~gsl~~lae~~gi~~-~r-v~a~a~------~e~K~~ii~eLkk-~~~k 95 (152)
T COG4087 29 GKLFSEVSETIQELHDM-VDIYIASGDR---KGSLVQLAEFVGIPV-ER-VFAGAD------PEMKAKIIRELKK-RYEK 95 (152)
T ss_pred cEEcHhhHHHHHHHHHh-heEEEecCCc---chHHHHHHHHcCCce-ee-eecccC------HHHHHHHHHHhcC-CCcE
Confidence 57899999999999999 9999999976 344555556679875 33 333332 2457777777765 3567
Q ss_pred EEEEcCCccccccc
Q 036571 221 IGNIGDQWSDLLGT 234 (251)
Q Consensus 221 ~~~VGDq~sDi~ga 234 (251)
+++|||..+|+..-
T Consensus 96 ~vmVGnGaND~laL 109 (152)
T COG4087 96 VVMVGNGANDILAL 109 (152)
T ss_pred EEEecCCcchHHHh
Confidence 88999999997654
No 179
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=96.76 E-value=0.0046 Score=54.63 Aligned_cols=126 Identities=21% Similarity=0.207 Sum_probs=84.5
Q ss_pred CCcEEEEecCCCccCC--hhhHhhhcCCCCCCChHHHHHHHhcCC-----CCCchHHHHHHHHHHHC------CCeEEEE
Q 036571 98 GREIWIFDIDETSLSN--LPYYAKHGFGVEPFNSTLFNEWVNKGE-----APSLPESLKLYKKLLSL------GIKIVFL 164 (251)
Q Consensus 98 ~~~avvfDIDgTlldn--~~~~~~~~~~~~~~~~~~~~~wv~~~~-----~~~~pga~ell~~L~~~------G~~I~~v 164 (251)
.---|.||-|++|.+- +..|.+.++ +.|.+...... .-|+..-++.|.+|+++ =+++++|
T Consensus 120 ~qlRIAFDgDaVLfsDesE~vy~~~GL-------~~F~~~E~~~a~~Pl~~GP~~~fl~~L~~lQ~~~~~~~~piRtalV 192 (264)
T PF06189_consen 120 DQLRIAFDGDAVLFSDESERVYQEQGL-------EAFHEHEKENADKPLPEGPFKDFLKKLSKLQKKFPPENSPIRTALV 192 (264)
T ss_pred CceEEEEcCCeEeecCcchHhHHhccH-------HHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHhcCCCCCceEEEEE
Confidence 3457999999999974 333433321 23333322221 22455566666777755 3789999
Q ss_pred eCCCcccHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCccEEEEEcCCccccccccccCcEEEeC
Q 036571 165 TGRPEDQRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRIIGNIGDQWSDLLGTNAGNRTFKLP 244 (251)
Q Consensus 165 TnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i~~~VGDq~sDi~ga~~g~r~f~lP 244 (251)
|.|+....+..++.|+.-|+...+-++|.+.+ |....+.+ +.-++++||..=+.++..+..+-.+|
T Consensus 193 TAR~apah~RvI~TLr~Wgv~vDEafFLgG~~---------K~~vL~~~-----~phIFFDDQ~~H~~~a~~~vps~hVP 258 (264)
T PF06189_consen 193 TARSAPAHERVIRTLRSWGVRVDEAFFLGGLP---------KGPVLKAF-----RPHIFFDDQDGHLESASKVVPSGHVP 258 (264)
T ss_pred EcCCCchhHHHHHHHHHcCCcHhHHHHhCCCc---------hhHHHHhh-----CCCEeecCchhhhhHhhcCCCEEecc
Confidence 99998777888999999999986667777653 44454444 35589999999888886555555555
No 180
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.71 E-value=0.0046 Score=53.51 Aligned_cols=57 Identities=16% Similarity=0.280 Sum_probs=39.6
Q ss_pred CcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHH
Q 036571 99 REIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENN 178 (251)
Q Consensus 99 ~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~ 178 (251)
+..|..||||||+... |+ | . .+...+.+|++.|++|+++|+++ +...+.-
T Consensus 7 ~~lIFtDlD~TLl~~~------------ye---~--------~----pA~pv~~el~d~G~~Vi~~SSKT---~aE~~~l 56 (274)
T COG3769 7 PLLIFTDLDGTLLPHS------------YE---W--------Q----PAAPVLLELKDAGVPVILCSSKT---RAEMLYL 56 (274)
T ss_pred ceEEEEcccCcccCCC------------CC---C--------C----ccchHHHHHHHcCCeEEEeccch---HHHHHHH
Confidence 4577889999999831 11 1 1 23456788999999999999999 4444444
Q ss_pred HHhcCCC
Q 036571 179 LKNVGFY 185 (251)
Q Consensus 179 L~~~G~~ 185 (251)
=+.+|++
T Consensus 57 ~~~l~v~ 63 (274)
T COG3769 57 QKSLGVQ 63 (274)
T ss_pred HHhcCCC
Confidence 4455665
No 181
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.0034 Score=51.97 Aligned_cols=129 Identities=18% Similarity=0.139 Sum_probs=77.6
Q ss_pred EEEEecCCCccCCh-------hhHhhhcCCC--CC--------CChHHHHHHHhcCC------CCCchHHHHHHHHHHHC
Q 036571 101 IWIFDIDETSLSNL-------PYYAKHGFGV--EP--------FNSTLFNEWVNKGE------APSLPESLKLYKKLLSL 157 (251)
Q Consensus 101 avvfDIDgTlldn~-------~~~~~~~~~~--~~--------~~~~~~~~wv~~~~------~~~~pga~ell~~L~~~ 157 (251)
-+.+|||||+.+-. +++.+..-.. .. ...+.+.+|+...+ +..-.++...|..+++.
T Consensus 8 ~~ciDIDGtit~~~t~~~~~n~~f~kslse~d~t~y~lhkil~i~~ee~~k~~e~~ea~l~ke~l~~q~v~~~L~~~~e~ 87 (194)
T COG5663 8 RCCIDIDGTITDDPTFAPYLNPAFEKSLSEADPTDYDLHKILNITTEEFWKWMEQTEAWLYKEALLAQLVKQVLPSLKEE 87 (194)
T ss_pred heeeccCCceecCcccchhccHHHHhhhhhcccccccHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 46799999999741 2222211000 11 22467777877633 33334556666666665
Q ss_pred CCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCccEEEEEcCCc-ccccccc-
Q 036571 158 GIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRIIGNIGDQW-SDLLGTN- 235 (251)
Q Consensus 158 G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i~~~VGDq~-sDi~ga~- 235 (251)
.+++++|+|....-..|-.||....++. +++.+.+-. +| -.+.| .+.+-+.+.|+. +-++.+.
T Consensus 88 -~~L~~itar~~dl~~iT~~~l~~q~ih~-~~l~i~g~h--~K-----V~~vr------th~idlf~ed~~~na~~iAk~ 152 (194)
T COG5663 88 -HRLIYITARKADLTRITYAWLFIQNIHY-DHLEIVGLH--HK-----VEAVR------THNIDLFFEDSHDNAGQIAKN 152 (194)
T ss_pred -ceeeeeehhhHHHHHHHHHHHHHhccch-hhhhhhccc--cc-----chhhH------hhccCccccccCchHHHHHHh
Confidence 7999999999888888999999998875 666665432 22 01221 244556777776 4444443
Q ss_pred ccCcEEEeC
Q 036571 236 AGNRTFKLP 244 (251)
Q Consensus 236 ~g~r~f~lP 244 (251)
+|.++..+-
T Consensus 153 ~~~~vilin 161 (194)
T COG5663 153 AGIPVILIN 161 (194)
T ss_pred cCCcEEEec
Confidence 676665553
No 182
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=96.67 E-value=0.0058 Score=62.98 Aligned_cols=90 Identities=24% Similarity=0.275 Sum_probs=62.2
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCCC----------------CCCccc
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSSY----------------SGETAV 203 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~~----------------~~kp~~ 203 (251)
.+|+.|++.+.++.|++.|+++.++||-.. ......=++.|+.. .+++...+-+ -..-.|
T Consensus 513 ~Dp~R~~~~~aI~~l~~aGI~vvmiTGD~~---~tA~aIA~~lGI~~-~~v~~g~~l~~~~~~el~~~~~~~~vfAr~~P 588 (867)
T TIGR01524 513 LDPPKESTKEAIAALFKNGINVKVLTGDNE---IVTARICQEVGIDA-NDFLLGADIEELSDEELARELRKYHIFARLTP 588 (867)
T ss_pred eCCCchhHHHHHHHHHHCCCEEEEEcCCCH---HHHHHHHHHcCCCC-CCeeecHhhhhCCHHHHHHHhhhCeEEEECCH
Confidence 479999999999999999999999999773 33344446679863 2222111100 001123
Q ss_pred cchHHHHHHHHhcCccEEEEEcCCccccccc
Q 036571 204 VYKSSERKRLEKKGYRIIGNIGDQWSDLLGT 234 (251)
Q Consensus 204 ~~K~~~r~~L~~~g~~i~~~VGDq~sDi~ga 234 (251)
+-|..+-+.+++.|+ +++++||..||..+-
T Consensus 589 e~K~~iV~~lq~~G~-vVam~GDGvNDapAL 618 (867)
T TIGR01524 589 MQKSRIIGLLKKAGH-TVGFLGDGINDAPAL 618 (867)
T ss_pred HHHHHHHHHHHhCCC-EEEEECCCcccHHHH
Confidence 557777788888776 688999999997654
No 183
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=96.67 E-value=0.0032 Score=63.90 Aligned_cols=90 Identities=22% Similarity=0.301 Sum_probs=61.8
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCc----ceEEEeCCC-----------------CC
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTW----ENLILKGSS-----------------YS 198 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~----~~lilr~~~-----------------~~ 198 (251)
.+|+.|++.+.++.|++.|+++.++||.. .......-++.|+... .++ ..+.. .-
T Consensus 440 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~---~~tA~~IA~~lGI~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~vf 515 (755)
T TIGR01647 440 FDPPRHDTKETIERARHLGVEVKMVTGDH---LAIAKETARRLGLGTNIYTADVL-LKGDNRDDLPSGELGEMVEDADGF 515 (755)
T ss_pred cCCChhhHHHHHHHHHHCCCeEEEECCCC---HHHHHHHHHHcCCCCCCcCHHHh-cCCcchhhCCHHHHHHHHHhCCEE
Confidence 37999999999999999999999999998 3344444566788541 011 00000 00
Q ss_pred CCccccchHHHHHHHHhcCccEEEEEcCCccccccc
Q 036571 199 GETAVVYKSSERKRLEKKGYRIIGNIGDQWSDLLGT 234 (251)
Q Consensus 199 ~kp~~~~K~~~r~~L~~~g~~i~~~VGDq~sDi~ga 234 (251)
.+-.|+.|..+-+.+++.|+ +++++||..||..+-
T Consensus 516 Ar~~Pe~K~~iV~~lq~~G~-~VamvGDGvNDapAL 550 (755)
T TIGR01647 516 AEVFPEHKYEIVEILQKRGH-LVGMTGDGVNDAPAL 550 (755)
T ss_pred EecCHHHHHHHHHHHHhcCC-EEEEEcCCcccHHHH
Confidence 11123557777788888775 689999999997653
No 184
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=96.67 E-value=0.0091 Score=59.85 Aligned_cols=80 Identities=18% Similarity=0.218 Sum_probs=59.8
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCcc
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYR 219 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~ 219 (251)
.+++.|++.+.+++|++.|+++.++||-. .......=++.|++. ++ ... .|+-|...-+++++.|+
T Consensus 443 ~D~~R~~~~eai~~Lr~~GI~vvMiTGDn---~~TA~aIA~elGId~---v~-A~~------~PedK~~iV~~lQ~~G~- 508 (679)
T PRK01122 443 KDIVKPGIKERFAELRKMGIKTVMITGDN---PLTAAAIAAEAGVDD---FL-AEA------TPEDKLALIRQEQAEGR- 508 (679)
T ss_pred eccCchhHHHHHHHHHHCCCeEEEECCCC---HHHHHHHHHHcCCcE---EE-ccC------CHHHHHHHHHHHHHcCC-
Confidence 37889999999999999999999999987 333344445679853 22 221 23567777788877764
Q ss_pred EEEEEcCCcccccc
Q 036571 220 IIGNIGDQWSDLLG 233 (251)
Q Consensus 220 i~~~VGDq~sDi~g 233 (251)
+++++||..||-.+
T Consensus 509 ~VaMtGDGvNDAPA 522 (679)
T PRK01122 509 LVAMTGDGTNDAPA 522 (679)
T ss_pred eEEEECCCcchHHH
Confidence 68999999999754
No 185
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=96.65 E-value=0.01 Score=61.52 Aligned_cols=92 Identities=21% Similarity=0.324 Sum_probs=63.1
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcce----EEEeCCC-----------------CC
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWEN----LILKGSS-----------------YS 198 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~----lilr~~~-----------------~~ 198 (251)
.+|+.|++.+.++.|++.|+++.++||.. ...+....++.|+..... ..+.+.. .-
T Consensus 535 ~Dplr~~v~e~I~~l~~aGI~v~miTGD~---~~tA~~ia~~~gi~~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~~~v~ 611 (917)
T TIGR01116 535 LDPPRPEVADAIEKCRTAGIRVIMITGDN---KETAEAICRRIGIFSPDEDVTFKSFTGREFDEMGPAKQRAACRSAVLF 611 (917)
T ss_pred eCCCchhHHHHHHHHHHCCCEEEEecCCC---HHHHHHHHHHcCCCCCCccccceeeeHHHHhhCCHHHHHHhhhcCeEE
Confidence 47999999999999999999999999987 555666667778854211 1222110 00
Q ss_pred CCccccchHHHHHHHHhcCccEEEEEcCCcccccccc
Q 036571 199 GETAVVYKSSERKRLEKKGYRIIGNIGDQWSDLLGTN 235 (251)
Q Consensus 199 ~kp~~~~K~~~r~~L~~~g~~i~~~VGDq~sDi~ga~ 235 (251)
.+..|..|..+-+.+++.|+ +++++||..+|..+-+
T Consensus 612 ar~~P~~K~~iV~~lq~~g~-~va~iGDG~ND~~alk 647 (917)
T TIGR01116 612 SRVEPSHKSELVELLQEQGE-IVAMTGDGVNDAPALK 647 (917)
T ss_pred EecCHHHHHHHHHHHHhcCC-eEEEecCCcchHHHHH
Confidence 01123446666667776664 6789999999997653
No 186
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=96.64 E-value=0.00065 Score=60.02 Aligned_cols=97 Identities=12% Similarity=0.125 Sum_probs=58.5
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCC----CCCCccccchHHHHHHHHhcCc
Q 036571 143 SLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSS----YSGETAVVYKSSERKRLEKKGY 218 (251)
Q Consensus 143 ~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~----~~~kp~~~~K~~~r~~L~~~g~ 218 (251)
.++++.+.++.|++.|++++++||++.... ...+...|...++..+....+ ..+||.+..-....+.+. ...
T Consensus 121 ~y~~l~~a~~~L~~~~~~~~iatn~~~~~~---~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~-~~~ 196 (257)
T TIGR01458 121 SYQILNQAFRLLLDGAKPLLIAIGKGRYYK---RKDGLALDVGPFVTALEYATDTKATVVGKPSKTFFLEALRATG-CEP 196 (257)
T ss_pred CHHHHHHHHHHHHcCCCCEEEEeCCCCCCc---CCCCCCCCchHHHHHHHHHhCCCceeecCCCHHHHHHHHHHhC-CCh
Confidence 468888999999999999999999884422 222333444333332222111 125776643222222222 123
Q ss_pred cEEEEEcCCc-cccccc-cccCcEEEe
Q 036571 219 RIIGNIGDQW-SDLLGT-NAGNRTFKL 243 (251)
Q Consensus 219 ~i~~~VGDq~-sDi~ga-~~g~r~f~l 243 (251)
+.+++|||+. +|+.+| .+|.+++.+
T Consensus 197 ~~~~~vGD~~~~Di~~a~~~G~~~i~v 223 (257)
T TIGR01458 197 EEAVMIGDDCRDDVGGAQDCGMRGIQV 223 (257)
T ss_pred hhEEEECCCcHHHHHHHHHcCCeEEEE
Confidence 5689999996 999998 457776655
No 187
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=96.61 E-value=0.0056 Score=63.35 Aligned_cols=89 Identities=22% Similarity=0.308 Sum_probs=62.5
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCC-----------------CCCCcc
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSS-----------------YSGETA 202 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~-----------------~~~kp~ 202 (251)
.+|+.|++.+.++.|++.|+++.++||-. .......-++.|+.. .. ++.+.+ .-..-.
T Consensus 548 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~---~~tA~~IA~~lGI~~-~~-v~~G~el~~l~~~el~~~~~~~~VfAr~s 622 (902)
T PRK10517 548 LDPPKETTAPALKALKASGVTVKILTGDS---ELVAAKVCHEVGLDA-GE-VLIGSDIETLSDDELANLAERTTLFARLT 622 (902)
T ss_pred hCcchhhHHHHHHHHHHCCCEEEEEcCCC---HHHHHHHHHHcCCCc-cC-ceeHHHHHhCCHHHHHHHHhhCcEEEEcC
Confidence 47999999999999999999999999987 334444456679853 22 222111 001113
Q ss_pred ccchHHHHHHHHhcCccEEEEEcCCccccccc
Q 036571 203 VVYKSSERKRLEKKGYRIIGNIGDQWSDLLGT 234 (251)
Q Consensus 203 ~~~K~~~r~~L~~~g~~i~~~VGDq~sDi~ga 234 (251)
|+.|..+-+.+++.|+ +++++||..||..+-
T Consensus 623 Pe~K~~IV~~Lq~~G~-vVam~GDGvNDaPAL 653 (902)
T PRK10517 623 PMHKERIVTLLKREGH-VVGFMGDGINDAPAL 653 (902)
T ss_pred HHHHHHHHHHHHHCCC-EEEEECCCcchHHHH
Confidence 4567777788887775 689999999997654
No 188
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=96.47 E-value=0.009 Score=62.81 Aligned_cols=91 Identities=21% Similarity=0.244 Sum_probs=63.0
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCc----------ceEEEeCCCCC-----------
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTW----------ENLILKGSSYS----------- 198 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~----------~~lilr~~~~~----------- 198 (251)
.+++.|++.+.++.|+++|+++.++||.. .......-++.|+... ...++.+..-.
T Consensus 644 ~Dp~r~~v~~aI~~l~~aGIkv~MiTGD~---~~tA~~iA~~~Gi~~~~~~~~~~~~~~~~vitG~~l~~l~~~~l~~~~ 720 (1053)
T TIGR01523 644 YDPPRNESAGAVEKCHQAGINVHMLTGDF---PETAKAIAQEVGIIPPNFIHDRDEIMDSMVMTGSQFDALSDEEVDDLK 720 (1053)
T ss_pred ecCCchhHHHHHHHHHHCCCEEEEECCCC---HHHHHHHHHHcCCCCccccccccccccceeeehHHhhhcCHHHHHHHh
Confidence 47999999999999999999999999998 4444445566788531 12333332100
Q ss_pred ------CCccccchHHHHHHHHhcCccEEEEEcCCccccccc
Q 036571 199 ------GETAVVYKSSERKRLEKKGYRIIGNIGDQWSDLLGT 234 (251)
Q Consensus 199 ------~kp~~~~K~~~r~~L~~~g~~i~~~VGDq~sDi~ga 234 (251)
..-.|..|..+-+.+++.|+ +++++||..||..+-
T Consensus 721 ~~~~V~ar~sP~~K~~iV~~lq~~g~-~Vam~GDGvNDapaL 761 (1053)
T TIGR01523 721 ALCLVIARCAPQTKVKMIEALHRRKA-FCAMTGDGVNDSPSL 761 (1053)
T ss_pred hcCeEEEecCHHHHHHHHHHHHhcCC-eeEEeCCCcchHHHH
Confidence 11123457777788877776 578999999997553
No 189
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=96.43 E-value=0.0057 Score=52.13 Aligned_cols=70 Identities=19% Similarity=0.285 Sum_probs=49.5
Q ss_pred hhhcCCCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccc
Q 036571 92 LELAGDGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQ 171 (251)
Q Consensus 92 ~~~~~~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~ 171 (251)
+.+...+++.+|+||||||++...- . .....-.-|++.+||+.+.+ .+.|++-|+....
T Consensus 14 ~~~~~~~kklLVLDLDeTLvh~~~~-----------~--------~~~~~~kRP~l~eFL~~~~~-~feIvVwTAa~~~- 72 (195)
T TIGR02245 14 LNPPREGKKLLVLDIDYTLFDHRSP-----------A--------ETGEELMRPYLHEFLTSAYE-DYDIVIWSATSMK- 72 (195)
T ss_pred cCCCCCCCcEEEEeCCCceEccccc-----------C--------CCceEEeCCCHHHHHHHHHh-CCEEEEEecCCHH-
Confidence 3444568899999999999974210 0 01123467999999999998 6999999999854
Q ss_pred HHHHHHHHHhcCC
Q 036571 172 RSVTENNLKNVGF 184 (251)
Q Consensus 172 r~~T~~~L~~~G~ 184 (251)
.....|..+|+
T Consensus 73 --ya~~~l~~l~~ 83 (195)
T TIGR02245 73 --WIEIKMTELGV 83 (195)
T ss_pred --HHHHHHHHhcc
Confidence 44445555554
No 190
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=96.38 E-value=0.0036 Score=55.05 Aligned_cols=65 Identities=18% Similarity=0.206 Sum_probs=41.5
Q ss_pred CcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHH
Q 036571 99 REIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENN 178 (251)
Q Consensus 99 ~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~ 178 (251)
+..++.|+||||++..+ .......++++...+.++.++++|||+ .+...+.
T Consensus 2 ~~ll~sDlD~Tl~~~~~--------------------------~~~~~l~~~l~~~~~~~~~~v~~TGRs---~~~~~~~ 52 (247)
T PF05116_consen 2 PRLLASDLDGTLIDGDD--------------------------EALARLEELLEQQARPEILFVYVTGRS---LESVLRL 52 (247)
T ss_dssp SEEEEEETBTTTBHCHH--------------------------HHHHHHHHHHHHHHCCGEEEEEE-SS----HHHHHHH
T ss_pred CEEEEEECCCCCcCCCH--------------------------HHHHHHHHHHHHhhCCCceEEEECCCC---HHHHHHH
Confidence 46789999999993211 122333444444557789999999999 7788888
Q ss_pred HHhcCCCCcceEEEe
Q 036571 179 LKNVGFYTWENLILK 193 (251)
Q Consensus 179 L~~~G~~~~~~lilr 193 (251)
++..+++.. +.+++
T Consensus 53 ~~~~~l~~P-d~~I~ 66 (247)
T PF05116_consen 53 LREYNLPQP-DYIIT 66 (247)
T ss_dssp HHHCT-EE--SEEEE
T ss_pred HHhCCCCCC-CEEEe
Confidence 888888753 33433
No 191
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=96.35 E-value=0.02 Score=59.31 Aligned_cols=89 Identities=24% Similarity=0.262 Sum_probs=62.0
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCC-----------------CCCCcc
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSS-----------------YSGETA 202 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~-----------------~~~kp~ 202 (251)
.+|+.|++.+.++.|+++|+++.++||-. .......=++.|+.. .+ ++.+.+ .-..-.
T Consensus 548 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~---~~tA~aIA~~lGI~~-~~-vi~G~el~~~~~~el~~~v~~~~VfAr~s 622 (903)
T PRK15122 548 LDPPKESAAPAIAALRENGVAVKVLTGDN---PIVTAKICREVGLEP-GE-PLLGTEIEAMDDAALAREVEERTVFAKLT 622 (903)
T ss_pred cCccHHHHHHHHHHHHHCCCeEEEECCCC---HHHHHHHHHHcCCCC-CC-ccchHhhhhCCHHHHHHHhhhCCEEEEeC
Confidence 47999999999999999999999999987 334444445678853 22 222111 001112
Q ss_pred ccchHHHHHHHHhcCccEEEEEcCCccccccc
Q 036571 203 VVYKSSERKRLEKKGYRIIGNIGDQWSDLLGT 234 (251)
Q Consensus 203 ~~~K~~~r~~L~~~g~~i~~~VGDq~sDi~ga 234 (251)
|+.|..+-+.+++.|+ +++++||..||..+-
T Consensus 623 Pe~K~~iV~~Lq~~G~-vVamtGDGvNDaPAL 653 (903)
T PRK15122 623 PLQKSRVLKALQANGH-TVGFLGDGINDAPAL 653 (903)
T ss_pred HHHHHHHHHHHHhCCC-EEEEECCCchhHHHH
Confidence 4567778888887775 689999999997653
No 192
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=95.98 E-value=0.009 Score=51.79 Aligned_cols=45 Identities=22% Similarity=0.286 Sum_probs=27.2
Q ss_pred EEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCC-CeEEEEeCCC
Q 036571 103 IFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLG-IKIVFLTGRP 168 (251)
Q Consensus 103 vfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G-~~I~~vTnR~ 168 (251)
+||.||||..-.+ ....+.+.|++.++|+.|.+.. ..|+++|||+
T Consensus 1 ~lDyDGTL~p~~~---------------------~p~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~ 46 (235)
T PF02358_consen 1 FLDYDGTLAPIVD---------------------DPDAAVPPPELRELLRALAADPNNTVAIVSGRS 46 (235)
T ss_dssp EEE-TTTSS---S----------------------GGG----HHHHHHHHHHHHHSE--EEEE-SS-
T ss_pred CcccCCccCCCCC---------------------CccccCCCHHHHHHHHHHhccCCCEEEEEEeCC
Confidence 5899999997422 1124688999999999999884 4799999999
No 193
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=95.73 E-value=0.026 Score=58.39 Aligned_cols=73 Identities=21% Similarity=0.230 Sum_probs=50.3
Q ss_pred CCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHC-CCeEEEEeCCCcccHHHH
Q 036571 97 DGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSL-GIKIVFLTGRPEDQRSVT 175 (251)
Q Consensus 97 ~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~-G~~I~~vTnR~e~~r~~T 175 (251)
.++..++||.||||..-.+. ++..-.-+....+.+-|+++++|+.|.+. +-.|++||||+ ++..
T Consensus 589 a~~RLlfLDyDGTLap~~~~------------P~~~~~~~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~---~~~L 653 (934)
T PLN03064 589 SNNRLLILGFNATLTEPVDT------------PGRRGDQIKEMELRLHPELKEPLRALCSDPKTTIVVLSGSD---RSVL 653 (934)
T ss_pred ccceEEEEecCceeccCCCC------------cccccccccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCC---HHHH
Confidence 45679999999999974211 00000000111356779999999999876 68999999999 7888
Q ss_pred HHHHHhcCC
Q 036571 176 ENNLKNVGF 184 (251)
Q Consensus 176 ~~~L~~~G~ 184 (251)
.++|...++
T Consensus 654 e~~fg~~~L 662 (934)
T PLN03064 654 DENFGEFDM 662 (934)
T ss_pred HHHhCCCCc
Confidence 888866443
No 194
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=95.70 E-value=0.028 Score=57.48 Aligned_cols=66 Identities=15% Similarity=0.140 Sum_probs=48.9
Q ss_pred CCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHC-CCeEEEEeCCCcccHHHH
Q 036571 97 DGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSL-GIKIVFLTGRPEDQRSVT 175 (251)
Q Consensus 97 ~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~-G~~I~~vTnR~e~~r~~T 175 (251)
.++.+++||.||||..-.+. +- ....+.+-|++.++|+.|.+. +-.|++||||+ ++..
T Consensus 505 a~~rll~LDyDGTL~~~~~~---------~~---------~p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~---~~~L 563 (797)
T PLN03063 505 SNNRLLILGFYGTLTEPRNS---------QI---------KEMDLGLHPELKETLKALCSDPKTTVVVLSRSG---KDIL 563 (797)
T ss_pred ccCeEEEEecCccccCCCCC---------cc---------ccccCCCCHHHHHHHHHHHcCCCCEEEEEeCCC---HHHH
Confidence 45679999999999953110 00 011356789999999999876 78999999999 7788
Q ss_pred HHHHHhcC
Q 036571 176 ENNLKNVG 183 (251)
Q Consensus 176 ~~~L~~~G 183 (251)
.++|...+
T Consensus 564 ~~~~~~~~ 571 (797)
T PLN03063 564 DKNFGEYN 571 (797)
T ss_pred HHHhCCCC
Confidence 88886543
No 195
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=95.58 E-value=0.047 Score=56.70 Aligned_cols=91 Identities=21% Similarity=0.279 Sum_probs=64.9
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcc--eEEEeCCCCC-----------------CC
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWE--NLILKGSSYS-----------------GE 200 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~--~lilr~~~~~-----------------~k 200 (251)
.+||.|++.+.++.|+++|+++..+||-. ......-=++.|+.... .+++.+..-. .+
T Consensus 545 ~Dppr~~v~~aI~~l~~AGI~v~MiTGD~---~~TA~aIa~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~VfAR 621 (917)
T COG0474 545 EDPPREDVKEAIEELREAGIKVWMITGDH---VETAIAIAKECGIEAEAESALVIDGAELDALSDEELAELVEELSVFAR 621 (917)
T ss_pred cCCCCccHHHHHHHHHHCCCcEEEECCCC---HHHHHHHHHHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCcEEEE
Confidence 48999999999999999999999999986 33333344567876633 2355443200 01
Q ss_pred ccccchHHHHHHHHhcCccEEEEEcCCccccccc
Q 036571 201 TAVVYKSSERKRLEKKGYRIIGNIGDQWSDLLGT 234 (251)
Q Consensus 201 p~~~~K~~~r~~L~~~g~~i~~~VGDq~sDi~ga 234 (251)
-.|..|..+-+.+++.|+ ++++.||..||..+-
T Consensus 622 vsP~qK~~IV~~lq~~g~-vVamtGDGvNDapAL 654 (917)
T COG0474 622 VSPEQKARIVEALQKSGH-VVAMTGDGVNDAPAL 654 (917)
T ss_pred cCHHHHHHHHHHHHhCCC-EEEEeCCCchhHHHH
Confidence 134568788888888876 689999999998653
No 196
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=95.42 E-value=0.059 Score=54.94 Aligned_cols=80 Identities=26% Similarity=0.367 Sum_probs=57.4
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCcc
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYR 219 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~ 219 (251)
.++..|++...+..|++.|++++++||-... ....-=++.|+. .++ ...- |..|.+.-++|++.+ .
T Consensus 721 ~D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~---aA~svA~~VGi~---~V~-aev~------P~~K~~~Ik~lq~~~-~ 786 (951)
T KOG0207|consen 721 EDQVRPDAALAVAELKSMGIKVVMLTGDNDA---AARSVAQQVGID---NVY-AEVL------PEQKAEKIKEIQKNG-G 786 (951)
T ss_pred ccccchhHHHHHHHHHhcCceEEEEcCCCHH---HHHHHHHhhCcc---eEE-eccC------chhhHHHHHHHHhcC-C
Confidence 4788999999999999999999999998733 333333456853 222 2211 245777888888766 5
Q ss_pred EEEEEcCCcccccc
Q 036571 220 IIGNIGDQWSDLLG 233 (251)
Q Consensus 220 i~~~VGDq~sDi~g 233 (251)
.+++|||..||-.+
T Consensus 787 ~VaMVGDGINDaPA 800 (951)
T KOG0207|consen 787 PVAMVGDGINDAPA 800 (951)
T ss_pred cEEEEeCCCCccHH
Confidence 67999999998654
No 197
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=95.26 E-value=0.092 Score=50.66 Aligned_cols=78 Identities=23% Similarity=0.332 Sum_probs=56.6
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCcc
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYR 219 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~ 219 (251)
.+++.|++.+.++.|++.|+++.++||..+....... +..|+. .. -.|..|...-+.+++.|+
T Consensus 345 ~d~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia---~~lgi~-------~~------~~p~~K~~~v~~l~~~g~- 407 (499)
T TIGR01494 345 EDPLRDDAKETISELREAGIRVIMLTGDNVLTAKAIA---KELGIF-------AR------VTPEEKAALVEALQKKGR- 407 (499)
T ss_pred cCCCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH---HHcCce-------ec------cCHHHHHHHHHHHHHCCC-
Confidence 3789999999999999999999999999844333333 344651 10 123567777777777774
Q ss_pred EEEEEcCCccccccc
Q 036571 220 IIGNIGDQWSDLLGT 234 (251)
Q Consensus 220 i~~~VGDq~sDi~ga 234 (251)
.++++||..+|...-
T Consensus 408 ~v~~vGDg~nD~~al 422 (499)
T TIGR01494 408 VVAMTGDGVNDAPAL 422 (499)
T ss_pred EEEEECCChhhHHHH
Confidence 579999999998654
No 198
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=95.13 E-value=0.054 Score=57.08 Aligned_cols=43 Identities=23% Similarity=0.387 Sum_probs=34.6
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCC
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFY 185 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~ 185 (251)
++++.|++.+.++.|++.|+++.++||... .....--++.|+-
T Consensus 654 ~d~lr~~~~~~I~~l~~agi~v~miTGD~~---~TA~~iA~~~gii 696 (1054)
T TIGR01657 654 ENPLKPDTKEVIKELKRASIRTVMITGDNP---LTAVHVARECGIV 696 (1054)
T ss_pred ecCCCccHHHHHHHHHHCCCeEEEECCCCH---HHHHHHHHHcCCC
Confidence 478999999999999999999999999983 3333444566774
No 199
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=95.10 E-value=0.096 Score=53.14 Aligned_cols=91 Identities=20% Similarity=0.340 Sum_probs=64.1
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcce----EEEeCCC-CC----------C-----
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWEN----LILKGSS-YS----------G----- 199 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~----lilr~~~-~~----------~----- 199 (251)
.+||.|++.+.++.+++.|++|..+||-. .+..+..-++.|+....+ ..+++.. +. .
T Consensus 582 ~DPPR~ev~~ai~~c~~aGIrV~mITGD~---~~TA~AI~r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~~~~~~vF 658 (972)
T KOG0202|consen 582 LDPPRPEVADAIELCRQAGIRVIMITGDN---KETAEAIAREIGIFSEDEDVSSMALTGSEFDDLSDEELDDAVRRVLVF 658 (972)
T ss_pred cCCCchhHHHHHHHHHHcCCEEEEEcCCC---HHHHHHHHHHhCCCcCCccccccccchhhhhcCCHHHHHHHhhcceEE
Confidence 37999999999999999999999999988 334444446678876433 2333321 00 0
Q ss_pred -CccccchHHHHHHHHhcCccEEEEEcCCccccccc
Q 036571 200 -ETAVVYKSSERKRLEKKGYRIIGNIGDQWSDLLGT 234 (251)
Q Consensus 200 -kp~~~~K~~~r~~L~~~g~~i~~~VGDq~sDi~ga 234 (251)
.-.|..|..+-+.|++.| .++++-||..||-.+-
T Consensus 659 aR~~P~HK~kIVeaLq~~g-eivAMTGDGVNDApAL 693 (972)
T KOG0202|consen 659 ARAEPQHKLKIVEALQSRG-EVVAMTGDGVNDAPAL 693 (972)
T ss_pred EecCchhHHHHHHHHHhcC-CEEEecCCCccchhhh
Confidence 113356777778887765 6899999999997653
No 200
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.91 E-value=0.34 Score=46.52 Aligned_cols=116 Identities=16% Similarity=0.253 Sum_probs=68.8
Q ss_pred cCCCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHH
Q 036571 95 AGDGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSV 174 (251)
Q Consensus 95 ~~~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~ 174 (251)
.+..+++.|+|+|+||.-.. ....+..+-... ..++.+++..-.+++..|+++|+-+++.|-+.+. .
T Consensus 218 ~g~~kK~LVLDLDNTLWGGV--IGedGv~GI~Ls--------~~~~G~~fk~fQ~~Ik~l~kqGVlLav~SKN~~~---d 284 (574)
T COG3882 218 SGKSKKALVLDLDNTLWGGV--IGEDGVDGIRLS--------NSAEGEAFKTFQNFIKGLKKQGVLLAVCSKNTEK---D 284 (574)
T ss_pred hCcccceEEEecCCcccccc--cccccccceeec--------CCCCchhHHHHHHHHHHHHhccEEEEEecCCchh---h
Confidence 45678999999999998642 111111110111 1234678888899999999999999999988854 3
Q ss_pred HHHHHHhcCCCCcceEEEeCCCC-----CCCccccchHHHHHHHHhcCccEEEEEcCCcc
Q 036571 175 TENNLKNVGFYTWENLILKGSSY-----SGETAVVYKSSERKRLEKKGYRIIGNIGDQWS 229 (251)
Q Consensus 175 T~~~L~~~G~~~~~~lilr~~~~-----~~kp~~~~K~~~r~~L~~~g~~i~~~VGDq~s 229 (251)
..+-++++ .+++++.++. ...|-.+.-..+-++| ..|.+-.++++|++-
T Consensus 285 a~evF~kh-----p~MiLkeedfa~~~iNW~~K~eNirkIAkkl-Nlg~dSmvFiDD~p~ 338 (574)
T COG3882 285 AKEVFRKH-----PDMILKEEDFAVFQINWDPKAENIRKIAKKL-NLGLDSMVFIDDNPA 338 (574)
T ss_pred HHHHHhhC-----CCeEeeHhhhhhheecCCcchhhHHHHHHHh-CCCccceEEecCCHH
Confidence 33344332 3566666542 1112111111222222 256778899999983
No 201
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=94.70 E-value=0.058 Score=51.61 Aligned_cols=100 Identities=22% Similarity=0.312 Sum_probs=55.7
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhc------CCCCcceEEEeCCC----------------CCC-
Q 036571 143 SLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNV------GFYTWENLILKGSS----------------YSG- 199 (251)
Q Consensus 143 ~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~------G~~~~~~lilr~~~----------------~~~- 199 (251)
+-|....+|+.|++.|.++|++||.+-...+...+.|-.- .+..+|++++.... ..+
T Consensus 184 k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv~A~KP~FF~~~~pfr~vd~~~g~ 263 (448)
T PF05761_consen 184 KDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLFDVVIVDARKPGFFTEGRPFREVDTETGK 263 (448)
T ss_dssp --CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCECEEEES--CCHHHCT---EEEEETTTSS
T ss_pred CCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhheeEEEEcCCCCcccCCCCceEEEECCCCc
Confidence 3578899999999999999999999866666666666444 33345677764321 000
Q ss_pred ----------CccccchHHHHHH----HHhcCccEEEEEcCCc-ccccccc--ccCcEEEe
Q 036571 200 ----------ETAVVYKSSERKR----LEKKGYRIIGNIGDQW-SDLLGTN--AGNRTFKL 243 (251)
Q Consensus 200 ----------kp~~~~K~~~r~~----L~~~g~~i~~~VGDq~-sDi~ga~--~g~r~f~l 243 (251)
++...|..+--.. +...|- .+++|||+. +|+...+ .|=||+.+
T Consensus 264 l~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~g~-~VLY~GDhi~~Di~~~k~~~gWrT~~I 323 (448)
T PF05761_consen 264 LKWGKYVGPLEKGKVYSGGNWDQLHKLLGWRGK-EVLYFGDHIYGDILKSKKRHGWRTAAI 323 (448)
T ss_dssp EECS---SS--TC-EEEE--HHHHHHHCT--GG-GEEEEESSTTTTHHHHHHHH-SEEEEE
T ss_pred cccccccccccCCCEeecCCHHHHHHHHccCCC-eEEEECCchhhhhhhhccccceEEEEE
Confidence 1111332221112 222333 479999999 9998873 35666544
No 202
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=94.29 E-value=0.065 Score=49.41 Aligned_cols=28 Identities=29% Similarity=0.471 Sum_probs=24.7
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCcc
Q 036571 143 SLPESLKLYKKLLSLGIKIVFLTGRPED 170 (251)
Q Consensus 143 ~~pga~ell~~L~~~G~~I~~vTnR~e~ 170 (251)
--|..+.++++|+++|.+++++||.+-.
T Consensus 241 r~~ql~~fl~kL~~~GKklFLiTNSPys 268 (510)
T KOG2470|consen 241 RNPQLLAFLRKLKDHGKKLFLITNSPYS 268 (510)
T ss_pred ccHHHHHHHHHHHHhcCcEEEEeCCchh
Confidence 3568899999999999999999999943
No 203
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=93.26 E-value=0.16 Score=47.31 Aligned_cols=76 Identities=24% Similarity=0.253 Sum_probs=49.8
Q ss_pred CCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccc-----
Q 036571 97 DGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQ----- 171 (251)
Q Consensus 97 ~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~----- 171 (251)
.+.+.+.||+||||++|.+-. .|. -++..| ....|.+..=++.|.+.|+.++|-||.....
T Consensus 73 ~~~K~i~FD~dgtlI~t~sg~---vf~---~~~~dw--------~~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~~ 138 (422)
T KOG2134|consen 73 GGSKIIMFDYDGTLIDTKSGK---VFP---KGSMDW--------RILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKLE 138 (422)
T ss_pred CCcceEEEecCCceeecCCcc---eee---ccCccc--------eeeccccchhhhhhccCCeEEEEEecccccccCcch
Confidence 566889999999999985411 010 112222 3556777777899999999999999976321
Q ss_pred ----HHHHHHHHHhcCCCC
Q 036571 172 ----RSVTENNLKNVGFYT 186 (251)
Q Consensus 172 ----r~~T~~~L~~~G~~~ 186 (251)
+......+.++|+|.
T Consensus 139 ~~~f~~Ki~~i~anl~vPi 157 (422)
T KOG2134|consen 139 LEEFKKKIKAIVANLGVPI 157 (422)
T ss_pred HHHHHHHHHHHHHhcCCce
Confidence 222334455578774
No 204
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=92.01 E-value=0.14 Score=36.23 Aligned_cols=45 Identities=22% Similarity=0.167 Sum_probs=27.6
Q ss_pred CCccccchHHHHHHHHhcCccEEEEEcCC-cccccccc-ccCcEEEeC
Q 036571 199 GETAVVYKSSERKRLEKKGYRIIGNIGDQ-WSDLLGTN-AGNRTFKLP 244 (251)
Q Consensus 199 ~kp~~~~K~~~r~~L~~~g~~i~~~VGDq-~sDi~ga~-~g~r~f~lP 244 (251)
+||.+..-....+.+. .....+++|||+ .+|+.+|+ +|.+++.+.
T Consensus 3 gKP~p~~~~~a~~~~~-~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~ 49 (75)
T PF13242_consen 3 GKPSPGMLEQALKRLG-VDPSRCVMVGDSLETDIEAAKAAGIDTILVL 49 (75)
T ss_dssp STTSHHHHHHHHHHHT-SGGGGEEEEESSTTTHHHHHHHTTSEEEEES
T ss_pred CCCcHHHHHHHHHHcC-CCHHHEEEEcCCcHhHHHHHHHcCCcEEEEC
Confidence 5776643333333332 112458999999 89999994 566666553
No 205
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=91.88 E-value=2.4 Score=41.29 Aligned_cols=36 Identities=28% Similarity=0.432 Sum_probs=24.6
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHh-cCCC
Q 036571 143 SLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKN-VGFY 185 (251)
Q Consensus 143 ~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~-~G~~ 185 (251)
..|.+.+ .++++|.. +++|+.+ +...+.++++ +|++
T Consensus 111 l~~~a~~---~~~~~g~~-vvVSASp---~~~Vepfa~~~LGid 147 (497)
T PLN02177 111 VHPETWR---VFNSFGKR-YIITASP---RIMVEPFVKTFLGAD 147 (497)
T ss_pred cCHHHHH---HHHhCCCE-EEEECCc---HHHHHHHHHHcCCCC
Confidence 4455554 44567754 9999998 6667777766 6886
No 206
>PLN02645 phosphoglycolate phosphatase
Probab=91.21 E-value=0.062 Score=48.75 Aligned_cols=93 Identities=14% Similarity=0.067 Sum_probs=47.6
Q ss_pred HHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCC----CCCCccccchHHHHHHHHhcCccEEEE
Q 036571 148 LKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSS----YSGETAVVYKSSERKRLEKKGYRIIGN 223 (251)
Q Consensus 148 ~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~----~~~kp~~~~K~~~r~~L~~~g~~i~~~ 223 (251)
....+.|+.++-.++++||++.... ....+...|...++..+....+ .-+||.+..-....+.+. ...+.+++
T Consensus 176 ~~a~~~l~~~~g~~~i~tn~d~~~~--~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~a~~~~~-~~~~~~~~ 252 (311)
T PLN02645 176 QYATLCIRENPGCLFIATNRDAVTH--LTDAQEWAGAGSMVGAIKGSTEREPLVVGKPSTFMMDYLANKFG-IEKSQICM 252 (311)
T ss_pred HHHHHHHhcCCCCEEEEeCCCCCCC--CCCCCCccchHHHHHHHHHHhCCCcccCCCChHHHHHHHHHHcC-CCcccEEE
Confidence 3345556543346889999884321 0111222333322322222222 125776643222222321 12346899
Q ss_pred EcCCc-cccccc-cccCcEEEe
Q 036571 224 IGDQW-SDLLGT-NAGNRTFKL 243 (251)
Q Consensus 224 VGDq~-sDi~ga-~~g~r~f~l 243 (251)
|||++ +|+.+| .+|.+++.+
T Consensus 253 VGD~~~~Di~~A~~aG~~~ilV 274 (311)
T PLN02645 253 VGDRLDTDILFGQNGGCKTLLV 274 (311)
T ss_pred EcCCcHHHHHHHHHcCCCEEEE
Confidence 99998 999998 457666544
No 207
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=90.78 E-value=0.22 Score=43.62 Aligned_cols=46 Identities=17% Similarity=0.254 Sum_probs=28.8
Q ss_pred CCCccccchHHHHHHHHhcCccEEEEEcCCc-cccccc-cccCcEEEeC
Q 036571 198 SGETAVVYKSSERKRLEKKGYRIIGNIGDQW-SDLLGT-NAGNRTFKLP 244 (251)
Q Consensus 198 ~~kp~~~~K~~~r~~L~~~g~~i~~~VGDq~-sDi~ga-~~g~r~f~lP 244 (251)
.+||.+..-....+.+. .....+++|||+. +|+.++ .+|.+++.+.
T Consensus 176 ~gKP~~~~~~~~~~~~~-~~~~~~~~VGD~~~~Di~~a~~~G~~~v~v~ 223 (249)
T TIGR01457 176 IGKPNAIIMEKAVEHLG-TEREETLMVGDNYLTDIRAGIDAGIDTLLVH 223 (249)
T ss_pred cCCChHHHHHHHHHHcC-CCcccEEEECCCchhhHHHHHHcCCcEEEEc
Confidence 46776643222333332 2245689999997 899999 4677766553
No 208
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=89.73 E-value=1.4 Score=33.46 Aligned_cols=73 Identities=19% Similarity=0.151 Sum_probs=49.3
Q ss_pred eEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCCCC----CCccc-cchHHHHHHHH-hcCccEEEEEcCCc-cccc
Q 036571 160 KIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSSYS----GETAV-VYKSSERKRLE-KKGYRIIGNIGDQW-SDLL 232 (251)
Q Consensus 160 ~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~----~kp~~-~~K~~~r~~L~-~~g~~i~~~VGDq~-sDi~ 232 (251)
++++||+.+........+-|+..|||. ..++++.-+.. -++.. .+|.....++. .-.....+.|||+= .|..
T Consensus 1 pf~YvS~SPwnly~~l~~Fl~~~~~P~-G~~~Lr~~~~~~~~~~~~~~~~~K~~~i~~i~~~fP~~kfiLIGDsgq~Dpe 79 (100)
T PF09949_consen 1 PFFYVSNSPWNLYPFLRDFLRRNGFPA-GPLLLRDYGPSLSGLFKSGAEEHKRDNIERILRDFPERKFILIGDSGQHDPE 79 (100)
T ss_pred CEEEEcCCHHHHHHHHHHHHHhcCCCC-CceEcccCCccccccccCCchhHHHHHHHHHHHHCCCCcEEEEeeCCCcCHH
Confidence 478999999988889999999999997 56788765321 11222 36654444443 33345678899976 6754
Q ss_pred c
Q 036571 233 G 233 (251)
Q Consensus 233 g 233 (251)
.
T Consensus 80 i 80 (100)
T PF09949_consen 80 I 80 (100)
T ss_pred H
Confidence 4
No 209
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=89.12 E-value=1 Score=36.63 Aligned_cols=55 Identities=18% Similarity=0.281 Sum_probs=41.1
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCC--cccHHHHHHHHHh-cCCCCcceEEEeCC
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRP--EDQRSVTENNLKN-VGFYTWENLILKGS 195 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~--e~~r~~T~~~L~~-~G~~~~~~lilr~~ 195 (251)
.....|++.+.+++|-+. +.|.++|.-. ...-+.--+||.. +-|-.+..+++++.
T Consensus 66 nL~V~p~aq~v~keLt~~-y~vYivtaamdhp~s~~dK~eWl~E~FPFi~~qn~vfCgn 123 (180)
T COG4502 66 NLGVQPFAQTVLKELTSI-YNVYIVTAAMDHPKSCEDKGEWLKEKFPFISYQNIVFCGN 123 (180)
T ss_pred hcCccccHHHHHHHHHhh-heEEEEEeccCCchhHHHHHHHHHHHCCCCChhhEEEecC
Confidence 356789999999999988 9999999873 3445666788876 45555667777764
No 210
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=89.04 E-value=2.9 Score=34.44 Aligned_cols=104 Identities=16% Similarity=0.204 Sum_probs=55.9
Q ss_pred CCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHC-C-CeEEEEeCCCcc----c
Q 036571 98 GREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSL-G-IKIVFLTGRPED----Q 171 (251)
Q Consensus 98 ~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~-G-~~I~~vTnR~e~----~ 171 (251)
+.+|+|||=|.++.-- ++ ...-|.-+.-++.+++. | ..|+++||.... .
T Consensus 42 ~ikavVlDKDNcit~P-------------~~------------~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~~~D~ 96 (190)
T KOG2961|consen 42 GIKAVVLDKDNCITAP-------------YS------------LAIWPPLLPSIERCKAVYGEKDIAVFSNSAGLTEYDH 96 (190)
T ss_pred CceEEEEcCCCeeeCC-------------cc------------cccCchhHHHHHHHHHHhCcccEEEEecCcCccccCC
Confidence 7899999999998753 22 22223333344455543 3 678888886532 2
Q ss_pred HHHHHHHHHh-cCCCCcceEEEeCCCCCCCccccchHHHHHHHHh----cCccEEEEEcCCc-ccccccc
Q 036571 172 RSVTENNLKN-VGFYTWENLILKGSSYSGETAVVYKSSERKRLEK----KGYRIIGNIGDQW-SDLLGTN 235 (251)
Q Consensus 172 r~~T~~~L~~-~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~----~g~~i~~~VGDq~-sDi~ga~ 235 (251)
-....+.|+. -|++. +|-.. .||. -.+++...+-. -.-..+++|||.. +||.-|+
T Consensus 97 d~s~Ak~le~k~gIpV-----lRHs~--kKP~--ct~E~~~y~~~Nshv~~~se~~~vGDRlfTDI~~aN 157 (190)
T KOG2961|consen 97 DDSKAKALEAKIGIPV-----LRHSV--KKPA--CTAEEVEYHFGNSHVCTSSELIMVGDRLFTDIVYAN 157 (190)
T ss_pred chHHHHHHHHhhCCce-----Eeecc--cCCC--ccHHHHHHHhCCcccCChhHeEEEccchhhhHhhhh
Confidence 2333455543 57764 33221 2221 11122111111 1123589999999 9998775
No 211
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=89.01 E-value=0.83 Score=44.21 Aligned_cols=33 Identities=27% Similarity=0.236 Sum_probs=27.0
Q ss_pred HHHHHHHCCCeEEEEeCCCcccHHHHHHHHHh-cCCCC
Q 036571 150 LYKKLLSLGIKIVFLTGRPEDQRSVTENNLKN-VGFYT 186 (251)
Q Consensus 150 ll~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~-~G~~~ 186 (251)
.++..++.| +++++|..+ |-..+.+++. +|++.
T Consensus 101 ~~~~~~~~g-~~vVVTAsP---rvmVEpFake~LG~D~ 134 (498)
T PLN02499 101 AWKVFSSCD-KRVVVTRMP---RVMVERFAKEHLRADE 134 (498)
T ss_pred HHHHHHcCC-eEEEEeCCH---HHHHHHHHHHhcCCce
Confidence 455667788 999999999 8888889998 78863
No 212
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=88.67 E-value=1.1 Score=38.43 Aligned_cols=43 Identities=28% Similarity=0.453 Sum_probs=33.5
Q ss_pred CcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCC
Q 036571 99 REIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRP 168 (251)
Q Consensus 99 ~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~ 168 (251)
.--++||+||||.-. .....|.+.++|..|+++ +.|.+|-+.+
T Consensus 11 ~~l~lfdvdgtLt~~--------------------------r~~~~~e~~~~l~~lr~~-v~ig~VggsD 53 (252)
T KOG3189|consen 11 ETLCLFDVDGTLTPP--------------------------RQKVTPEMLEFLQKLRKK-VTIGFVGGSD 53 (252)
T ss_pred ceEEEEecCCccccc--------------------------cccCCHHHHHHHHHHhhh-eEEEEeecHH
Confidence 346889999999864 245678888888887776 7888888775
No 213
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=88.33 E-value=1.3 Score=38.56 Aligned_cols=96 Identities=11% Similarity=0.232 Sum_probs=49.9
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCCc--ccHHHHHHHHHhcCCCC---cc-eEEEeCCCCCCCccccchHHHHHHHHh
Q 036571 142 PSLPESLKLYKKLLSLGIKIVFLTGRPE--DQRSVTENNLKNVGFYT---WE-NLILKGSSYSGETAVVYKSSERKRLEK 215 (251)
Q Consensus 142 ~~~pga~ell~~L~~~G~~I~~vTnR~e--~~r~~T~~~L~~~G~~~---~~-~lilr~~~~~~kp~~~~K~~~r~~L~~ 215 (251)
+.++++.++++.++..+..+.++|+.++ ..+......++.+|+.. +. .+-+.+.+. .|+ .+.+.-++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ei~~~~~-~K~-----~~l~~l~~~ 210 (272)
T PRK10530 137 PTFTQVDSLAQAARQVNAIWKFALTHEDLPQLQHFAKHVEHELGLECEWSWHDQVDIARKGN-SKG-----KRLTQWVEA 210 (272)
T ss_pred cceEEcccHHHHHhhcCCcEEEEEecCCHHHHHHHHHHHhhhcCceEEEecCceEEEecCCC-ChH-----HHHHHHHHH
Confidence 3456777888888777776667776543 22233333334445431 00 111111111 121 234444444
Q ss_pred cCc--cEEEEEcCCccccccccccCcEEEe
Q 036571 216 KGY--RIIGNIGDQWSDLLGTNAGNRTFKL 243 (251)
Q Consensus 216 ~g~--~i~~~VGDq~sDi~ga~~g~r~f~l 243 (251)
.|. ..+++|||+.+|+.........+..
T Consensus 211 ~gi~~~e~i~~GD~~NDi~m~~~ag~~vam 240 (272)
T PRK10530 211 QGWSMKNVVAFGDNFNDISMLEAAGLGVAM 240 (272)
T ss_pred cCCCHHHeEEeCCChhhHHHHHhcCceEEe
Confidence 453 3589999999999887533334433
No 214
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=88.05 E-value=1.6 Score=46.23 Aligned_cols=29 Identities=31% Similarity=0.243 Sum_probs=27.2
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCC
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRP 168 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~ 168 (251)
++++-|++.+.++.|++.|+++.++||-.
T Consensus 629 eD~lq~~v~etI~~L~~AGIkv~mlTGD~ 657 (1057)
T TIGR01652 629 EDKLQEGVPETIELLRQAGIKIWVLTGDK 657 (1057)
T ss_pred hhhhhhccHHHHHHHHHCCCeEEEEcCCc
Confidence 47899999999999999999999999976
No 215
>PF10307 DUF2410: Hypothetical protein (DUF2410); InterPro: IPR018812 This entry represents a family of proteins conserved in fungi whose function is not known. There are two characteristic sequence motifs, GGWW and TGR.
Probab=86.95 E-value=6.3 Score=33.65 Aligned_cols=89 Identities=21% Similarity=0.164 Sum_probs=62.1
Q ss_pred chHHHHHHHHH-HHCCCeEEEEeCCCc-ccHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHh--cCcc
Q 036571 144 LPESLKLYKKL-LSLGIKIVFLTGRPE-DQRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEK--KGYR 219 (251)
Q Consensus 144 ~pga~ell~~L-~~~G~~I~~vTnR~e-~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~--~g~~ 219 (251)
...++++.+.- ++..--.+++|||++ ...+...+.|...|+.. +.++|++.+....+...||......|.. ...+
T Consensus 56 Ne~Iv~la~~S~~~~dtltVLLTGR~e~~F~~lI~~ml~s~~L~F-d~v~LKp~~~~~~sTm~fK~~~l~~ll~~Y~~~~ 134 (197)
T PF10307_consen 56 NENIVELARLSMQDPDTLTVLLTGRRESKFSSLIERMLASKGLEF-DAVCLKPENQRFSSTMDFKQAFLEDLLHTYKNAE 134 (197)
T ss_pred hHHHHHHHHHhhcCCCeeEEEEeCCCchhHHHHHHHHHhcCCCCc-cEEEeCcccccCccccHHHHHHHHHHHHhcCCCC
Confidence 45677777654 344666789999997 55677777788889974 6788888743444556799888888764 2335
Q ss_pred EEEEEcCCcccccc
Q 036571 220 IIGNIGDQWSDLLG 233 (251)
Q Consensus 220 i~~~VGDq~sDi~g 233 (251)
.+-+.+|...=+.+
T Consensus 135 eI~IYeDR~~hvk~ 148 (197)
T PF10307_consen 135 EIRIYEDRPKHVKG 148 (197)
T ss_pred EEEEEcCCHHHHHH
Confidence 67888998854443
No 216
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=86.85 E-value=0.37 Score=40.04 Aligned_cols=19 Identities=16% Similarity=-0.040 Sum_probs=16.1
Q ss_pred CcEEEEecCCCccCChhhH
Q 036571 99 REIWIFDIDETSLSNLPYY 117 (251)
Q Consensus 99 ~~avvfDIDgTlldn~~~~ 117 (251)
.++|+||.||||+++.+..
T Consensus 1 i~~i~fDktGTLt~~~~~v 19 (215)
T PF00702_consen 1 IDAICFDKTGTLTQGKMSV 19 (215)
T ss_dssp ESEEEEECCTTTBESHHEE
T ss_pred CeEEEEecCCCcccCeEEE
Confidence 3689999999999987654
No 217
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=85.33 E-value=3.4 Score=40.32 Aligned_cols=79 Identities=20% Similarity=0.294 Sum_probs=54.0
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHH-HhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCc
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNL-KNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGY 218 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L-~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~ 218 (251)
++...||++|=+.+|++.|++-+.+||-.+ .|.... .++|++. ++... + |+-|-..-++-+.+|
T Consensus 445 kDivK~Gi~ERf~elR~MgIkTvM~TGDN~----~TAa~IA~EAGVDd----fiAea----t--PEdK~~~I~~eQ~~g- 509 (681)
T COG2216 445 KDIVKPGIKERFAELRKMGIKTVMITGDNP----LTAAAIAAEAGVDD----FIAEA----T--PEDKLALIRQEQAEG- 509 (681)
T ss_pred hhhcchhHHHHHHHHHhcCCeEEEEeCCCH----HHHHHHHHHhCchh----hhhcC----C--hHHHHHHHHHHHhcC-
Confidence 356789999999999999999999999873 344444 4578865 22222 1 233444333433444
Q ss_pred cEEEEEcCCcccccc
Q 036571 219 RIIGNIGDQWSDLLG 233 (251)
Q Consensus 219 ~i~~~VGDq~sDi~g 233 (251)
+.+.+.||.-||-.+
T Consensus 510 rlVAMtGDGTNDAPA 524 (681)
T COG2216 510 RLVAMTGDGTNDAPA 524 (681)
T ss_pred cEEEEcCCCCCcchh
Confidence 689999999999754
No 218
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=83.00 E-value=3.8 Score=36.11 Aligned_cols=86 Identities=21% Similarity=0.132 Sum_probs=44.3
Q ss_pred HHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCC----cceEEEeCCCCCCCccccchHHHHHHHHhc--Cc-cEEEEE
Q 036571 152 KKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYT----WENLILKGSSYSGETAVVYKSSERKRLEKK--GY-RIIGNI 224 (251)
Q Consensus 152 ~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~----~~~lilr~~~~~~kp~~~~K~~~r~~L~~~--g~-~i~~~V 224 (251)
+.++..++..+++-..+....+...+.|...|+.. +.--++.. +.+++ +++.-++.. .. ..+++|
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ei~~~-~~Kg~-------al~~l~~~~~i~~~~~v~~~ 213 (273)
T PRK00192 142 RLAKDREFSEPFLWNGSEAAKERFEEALKRLGLKVTRGGRFLHLLGG-GDKGK-------AVRWLKELYRRQDGVETIAL 213 (273)
T ss_pred HHHHhcccCCceeecCchHHHHHHHHHHHHcCCEEEECCeEEEEeCC-CCHHH-------HHHHHHHHHhccCCceEEEE
Confidence 33455566655552222334666777787777642 11112222 11111 222222222 24 678999
Q ss_pred cCCccccccccccCcEEEeCC
Q 036571 225 GDQWSDLLGTNAGNRTFKLPD 245 (251)
Q Consensus 225 GDq~sDi~ga~~g~r~f~lPn 245 (251)
||+.+|+.........+...|
T Consensus 214 GDs~NDi~m~~~ag~~vam~N 234 (273)
T PRK00192 214 GDSPNDLPMLEAADIAVVVPG 234 (273)
T ss_pred cCChhhHHHHHhCCeeEEeCC
Confidence 999999988754445555544
No 219
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=82.67 E-value=4.1 Score=34.60 Aligned_cols=91 Identities=14% Similarity=0.157 Sum_probs=55.7
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCC----------CcceEEEeCCCCCCCc-cccchHH
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFY----------TWENLILKGSSYSGET-AVVYKSS 208 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~----------~~~~lilr~~~~~~kp-~~~~K~~ 208 (251)
+++.+|.+.+.+++.+++|+++++-|+.+-. .++|- +|.. +|++.-. + .|. ...|. .
T Consensus 101 kahlypDav~~ik~wk~~g~~vyiYSSGSV~-----AQkL~-Fghs~agdL~~lfsGyfDtti---G--~KrE~~SY~-k 168 (229)
T COG4229 101 KAHLYPDAVQAIKRWKALGMRVYIYSSGSVK-----AQKLF-FGHSDAGDLNSLFSGYFDTTI---G--KKRESQSYA-K 168 (229)
T ss_pred ccccCHhHHHHHHHHHHcCCcEEEEcCCCch-----hHHHh-hcccccccHHhhhcceeeccc---c--ccccchhHH-H
Confidence 3788999999999999999999999998732 22221 1222 2222211 1 111 11232 1
Q ss_pred HHHHHHhcCccEEEEEcCCccccccc-cccCcEEEe
Q 036571 209 ERKRLEKKGYRIIGNIGDQWSDLLGT-NAGNRTFKL 243 (251)
Q Consensus 209 ~r~~L~~~g~~i~~~VGDq~sDi~ga-~~g~r~f~l 243 (251)
+...+. .....++++.|++..+.++ .+|+++..+
T Consensus 169 Ia~~iG-l~p~eilFLSDn~~EL~AA~~vGl~t~l~ 203 (229)
T COG4229 169 IAGDIG-LPPAEILFLSDNPEELKAAAGVGLATGLA 203 (229)
T ss_pred HHHhcC-CCchheEEecCCHHHHHHHHhcchheeee
Confidence 222221 2245689999999999887 467777665
No 220
>PLN03190 aminophospholipid translocase; Provisional
Probab=82.57 E-value=8.7 Score=41.35 Aligned_cols=29 Identities=28% Similarity=0.277 Sum_probs=27.0
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCC
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRP 168 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~ 168 (251)
++++-+++.+.++.|+++|+++.++||-.
T Consensus 724 ~D~lr~~v~~~I~~l~~agi~v~mlTGD~ 752 (1178)
T PLN03190 724 EDKLQQGVPEAIESLRTAGIKVWVLTGDK 752 (1178)
T ss_pred ecCCchhHHHHHHHHHHCCCEEEEECCCC
Confidence 36899999999999999999999999976
No 221
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=81.57 E-value=1.2 Score=38.63 Aligned_cols=46 Identities=24% Similarity=0.311 Sum_probs=26.2
Q ss_pred CCCccccchHHHHHHHHhcCccEEEEEcCCc-ccccccc-ccCcEEEe
Q 036571 198 SGETAVVYKSSERKRLEKKGYRIIGNIGDQW-SDLLGTN-AGNRTFKL 243 (251)
Q Consensus 198 ~~kp~~~~K~~~r~~L~~~g~~i~~~VGDq~-sDi~ga~-~g~r~f~l 243 (251)
.+||.+..-....+.+....-+.+++|||+. +|+.+|+ +|.+++.+
T Consensus 186 ~~KP~~~~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~~G~~~i~v 233 (236)
T TIGR01460 186 VGKPSPAIYRAALNLLQARPERRDVMVGDNLRTDILGAKNAGFDTLLV 233 (236)
T ss_pred ecCCCHHHHHHHHHHhCCCCccceEEECCCcHHHHHHHHHCCCcEEEE
Confidence 3566554322222333211123458999998 8999984 57666543
No 222
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=81.28 E-value=5.7 Score=36.16 Aligned_cols=25 Identities=8% Similarity=0.264 Sum_probs=21.4
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeC
Q 036571 142 PSLPESLKLYKKLLSLGIKIVFLTG 166 (251)
Q Consensus 142 ~~~pga~ell~~L~~~G~~I~~vTn 166 (251)
..+|...+++++|+++|+++++...
T Consensus 63 ~~FPdp~~mi~~L~~~G~kv~~~i~ 87 (319)
T cd06591 63 ERFPDPKAMVRELHEMNAELMISIW 87 (319)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEec
Confidence 4678889999999999999987654
No 223
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=81.03 E-value=5.5 Score=33.59 Aligned_cols=27 Identities=15% Similarity=0.019 Sum_probs=19.6
Q ss_pred ccEEEEEcCCccccccccccCcEEEeC
Q 036571 218 YRIIGNIGDQWSDLLGTNAGNRTFKLP 244 (251)
Q Consensus 218 ~~i~~~VGDq~sDi~ga~~g~r~f~lP 244 (251)
...+++|||+.+|+.--......|.+|
T Consensus 195 ~~~vi~~GD~~NDi~ml~~ag~~va~~ 221 (221)
T TIGR02463 195 DVKTLGLGDGPNDLPLLEVADYAVVIK 221 (221)
T ss_pred CCcEEEECCCHHHHHHHHhCCceEEeC
Confidence 346899999999998765444555554
No 224
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=80.94 E-value=7 Score=37.68 Aligned_cols=90 Identities=13% Similarity=0.193 Sum_probs=60.1
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcc-eEEEeCCCCCCC-ccccchHHHHHHHHhcCcc
Q 036571 142 PSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWE-NLILKGSSYSGE-TAVVYKSSERKRLEKKGYR 219 (251)
Q Consensus 142 ~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~-~lilr~~~~~~k-p~~~~K~~~r~~L~~~g~~ 219 (251)
-|.....+|++++.+.|.+|+++|.-.-. -+...+.|...|+.... .++++++.--.| +...+|.-. .++.-...
T Consensus 99 ypn~~~~eL~e~ai~n~krVIlISDMYlp-s~Il~~~L~s~g~d~~nipiY~S~e~rl~KnSg~LFk~Vl--k~EnVd~~ 175 (635)
T COG5610 99 YPNKKNIELVEEAIKNEKRVILISDMYLP-SSILRTFLNSFGPDFNNIPIYMSSEFRLKKNSGNLFKAVL--KLENVDPK 175 (635)
T ss_pred eccccchHHHHHHHhCCCeEEEEecccCc-HHHHHHHHHhcCCCccCceeeecceeehhcccchHHHHHH--hhcCCChh
Confidence 45566889999999999999999987533 56777888999998754 466766542112 112344332 22222344
Q ss_pred EEEEEcCCc-cccccc
Q 036571 220 IIGNIGDQW-SDLLGT 234 (251)
Q Consensus 220 i~~~VGDq~-sDi~ga 234 (251)
-|+-+||+| .|..-+
T Consensus 176 ~w~H~GDN~~aD~l~p 191 (635)
T COG5610 176 KWIHCGDNWVADYLKP 191 (635)
T ss_pred heEEecCchhhhhcCc
Confidence 699999999 666655
No 225
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=80.35 E-value=9.8 Score=39.34 Aligned_cols=101 Identities=19% Similarity=0.195 Sum_probs=65.2
Q ss_pred HHHHHHHhc-----------CCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcce--EEEeCCC
Q 036571 130 TLFNEWVNK-----------GEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWEN--LILKGSS 196 (251)
Q Consensus 130 ~~~~~wv~~-----------~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~--lilr~~~ 196 (251)
..|+.|... -++|..||+.+.++.++..|++|-.|||-.-... ...-.+-|+-..+. +.+-+..
T Consensus 624 ~~~~~~~~~~~~lt~laivGIkDPvRPgV~~AV~~Cq~AGItVRMVTGDNI~TA---kAIA~eCGILt~~~d~~~lEG~e 700 (1034)
T KOG0204|consen 624 PSWDNEELPEGGLTLLAIVGIKDPVRPGVPEAVQLCQRAGITVRMVTGDNINTA---KAIARECGILTPGGDFLALEGKE 700 (1034)
T ss_pred CCccccccCCCCeEEEEEeeccCCCCCCcHHHHHHHHHcCcEEEEEeCCcHHHH---HHHHHHcccccCCCccceecchh
Confidence 457766553 2578999999999999999999999999873322 22223456643222 3332221
Q ss_pred C-----------------CCCccccchHHHHHHHHhcCccEEEEEcCCccccccc
Q 036571 197 Y-----------------SGETAVVYKSSERKRLEKKGYRIIGNIGDQWSDLLGT 234 (251)
Q Consensus 197 ~-----------------~~kp~~~~K~~~r~~L~~~g~~i~~~VGDq~sDi~ga 234 (251)
. -..+.|..|.-+-+.|++.| .++++-||.-+|-.+-
T Consensus 701 Fr~~s~ee~~~i~pkl~VlARSSP~DK~lLVk~L~~~g-~VVAVTGDGTNDaPAL 754 (1034)
T KOG0204|consen 701 FRELSQEERDKIWPKLRVLARSSPNDKHLLVKGLIKQG-EVVAVTGDGTNDAPAL 754 (1034)
T ss_pred hhhcCHHHHHhhhhhheeeecCCCchHHHHHHHHHhcC-cEEEEecCCCCCchhh
Confidence 0 01223445666667777655 4788999999997654
No 226
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=79.80 E-value=2.2 Score=38.81 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=18.2
Q ss_pred cEEEEEcCCc-ccccccc-ccCcEE
Q 036571 219 RIIGNIGDQW-SDLLGTN-AGNRTF 241 (251)
Q Consensus 219 ~i~~~VGDq~-sDi~ga~-~g~r~f 241 (251)
+.+++|||++ +||.+|+ +|..++
T Consensus 264 ~~~~mIGD~~~tDI~ga~~~G~~si 288 (321)
T TIGR01456 264 HALYMVGDNPASDIIGAQNYGWFSC 288 (321)
T ss_pred heEEEEcCChhhhhhhHHhCCceEE
Confidence 4789999999 9999984 455544
No 227
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=78.86 E-value=4 Score=34.39 Aligned_cols=68 Identities=16% Similarity=0.127 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCCCcc---eEEEeCCCCCCCccccchH-HHHHHHHhcCcc--EEEEEcCCccccccccccCcEEEeCC
Q 036571 172 RSVTENNLKNVGFYTWE---NLILKGSSYSGETAVVYKS-SERKRLEKKGYR--IIGNIGDQWSDLLGTNAGNRTFKLPD 245 (251)
Q Consensus 172 r~~T~~~L~~~G~~~~~---~lilr~~~~~~kp~~~~K~-~~r~~L~~~g~~--i~~~VGDq~sDi~ga~~g~r~f~lPn 245 (251)
.+...+.|+..|+.... .+-+.+.+ .-|. .++.-++..|.. .+++|||+.+|+.........|...|
T Consensus 118 ~~~~~~~l~~~~~~~~~~~~~~ei~~~~-------~~K~~~i~~l~~~~~i~~~~~i~iGDs~ND~~ml~~ag~~vam~n 190 (215)
T TIGR01487 118 VDEVREIIKERGLNLVDSGFAIHIMKKG-------VDKGVGVEKLKELLGIKPEEVAAIGDSENDIDLFRVVGFKVAVAN 190 (215)
T ss_pred HHHHHHHHHhCCeEEEecCceEEEecCC-------CChHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHhCCCeEEcCC
Confidence 55667777777764321 11112211 1232 333333444544 48999999999998865556666555
Q ss_pred C
Q 036571 246 P 246 (251)
Q Consensus 246 p 246 (251)
.
T Consensus 191 a 191 (215)
T TIGR01487 191 A 191 (215)
T ss_pred c
Confidence 3
No 228
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=77.89 E-value=9.4 Score=30.14 Aligned_cols=63 Identities=17% Similarity=0.244 Sum_probs=41.1
Q ss_pred eEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCccEEEEEcCCc
Q 036571 160 KIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRIIGNIGDQW 228 (251)
Q Consensus 160 ~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i~~~VGDq~ 228 (251)
+||+++||+...++.....|++.|+.. +++......+++ .-+.+.+.+..-++-|+++-.|..
T Consensus 1 kVFIvhg~~~~~~~~v~~~L~~~~~ep---~i~~~~~~~g~t---iie~le~~~~~~~faIvl~TpDD~ 63 (125)
T PF10137_consen 1 KVFIVHGRDLAAAEAVERFLEKLGLEP---IIWHEQPNLGQT---IIEKLEEAADSVDFAIVLFTPDDI 63 (125)
T ss_pred CEEEEeCCCHHHHHHHHHHHHhCCCce---EEeecCCCCCCc---hHHHHHHHhccCCEEEEEEccccc
Confidence 589999988888888899998888853 455443333332 223344445556777888777665
No 229
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=77.35 E-value=6.5 Score=35.30 Aligned_cols=71 Identities=17% Similarity=0.237 Sum_probs=41.7
Q ss_pred HHHHHHHhhhhcCCCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEE
Q 036571 84 EAIVYAQSLELAGDGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVF 163 (251)
Q Consensus 84 ~a~~~~~~~~~~~~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~ 163 (251)
+...+++.++..+=..++|++|+|=..-...+-+ ...++.-.++ ...+|...+++++|+++|+++++
T Consensus 26 ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~-~~~~~~ft~d------------~~~FPdp~~mi~~Lh~~G~k~v~ 92 (292)
T cd06595 26 EYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKY-GSGWTGYSWN------------RKLFPDPEKLLQDLHDRGLKVTL 92 (292)
T ss_pred HHHHHHHHHHHhCCCccEEEEecccccccccccc-cCCcceeEEC------------hhcCCCHHHHHHHHHHCCCEEEE
Confidence 4445556665555667899999982111000000 0011111122 34678889999999999999998
Q ss_pred EeCC
Q 036571 164 LTGR 167 (251)
Q Consensus 164 vTnR 167 (251)
...-
T Consensus 93 ~v~P 96 (292)
T cd06595 93 NLHP 96 (292)
T ss_pred EeCC
Confidence 7754
No 230
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=77.14 E-value=9.7 Score=34.61 Aligned_cols=44 Identities=16% Similarity=0.190 Sum_probs=30.7
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCC
Q 036571 141 APSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGF 184 (251)
Q Consensus 141 ~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~ 184 (251)
...+|...+++++|+++|+++++...-.-......-+.+.+.|+
T Consensus 66 ~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~~g~ 109 (317)
T cd06598 66 RKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVKAGA 109 (317)
T ss_pred cccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHhCCC
Confidence 45677789999999999999998875332222234456666676
No 231
>PRK10444 UMP phosphatase; Provisional
Probab=74.70 E-value=2.6 Score=36.96 Aligned_cols=45 Identities=18% Similarity=0.238 Sum_probs=28.1
Q ss_pred CCCccccchHHHHHHHHhcCccEEEEEcCCc-cccccc-cccCcEEEe
Q 036571 198 SGETAVVYKSSERKRLEKKGYRIIGNIGDQW-SDLLGT-NAGNRTFKL 243 (251)
Q Consensus 198 ~~kp~~~~K~~~r~~L~~~g~~i~~~VGDq~-sDi~ga-~~g~r~f~l 243 (251)
.+||.+..-....+.+. ...+.+++|||+. +|+.+| .+|.+++.+
T Consensus 172 ~gKP~~~~~~~~~~~~~-~~~~~~v~IGD~~~tDi~~A~~~G~~~vlV 218 (248)
T PRK10444 172 VGKPSPWIIRAALNKMQ-AHSEETVIVGDNLRTDILAGFQAGLETILV 218 (248)
T ss_pred cCCCCHHHHHHHHHHcC-CCcccEEEECCCcHHHHHHHHHcCCCEEEE
Confidence 46776643333323332 1245689999997 899999 457776655
No 232
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=73.02 E-value=28 Score=32.84 Aligned_cols=64 Identities=28% Similarity=0.395 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHHhhhhc-CCCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHH
Q 036571 77 DSEAVAYEAIVYAQSLELA-GDGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLL 155 (251)
Q Consensus 77 d~~~~~~~a~~~~~~~~~~-~~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~ 155 (251)
|++.|.+-| +-+... ..+.+-|-||=|+||.+-.. .+ ....+.+|-.+ .|-
T Consensus 128 DvR~ILN~A----Qi~al~~~~~L~LvTFDgDvTLY~DG~----------sl----------~~d~pvi~~ii----~LL 179 (408)
T PF06437_consen 128 DVRHILNTA----QIMALAKNYGLKLVTFDGDVTLYEDGA----------SL----------EPDNPVIPRII----KLL 179 (408)
T ss_pred HHHHHHHHH----HHHHhcccCCceEEEEcCCcccccCCC----------CC----------CCCchHHHHHH----HHH
Confidence 666555444 322222 23778999999999997321 01 01233444333 566
Q ss_pred HCCCeEEEEeCCC
Q 036571 156 SLGIKIVFLTGRP 168 (251)
Q Consensus 156 ~~G~~I~~vTnR~ 168 (251)
++|++|++||.--
T Consensus 180 ~~gv~VgIVTAAG 192 (408)
T PF06437_consen 180 RRGVKVGIVTAAG 192 (408)
T ss_pred hcCCeEEEEeCCC
Confidence 8899999999864
No 233
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=71.37 E-value=18 Score=32.66 Aligned_cols=26 Identities=15% Similarity=0.422 Sum_probs=21.9
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCC
Q 036571 142 PSLPESLKLYKKLLSLGIKIVFLTGR 167 (251)
Q Consensus 142 ~~~pga~ell~~L~~~G~~I~~vTnR 167 (251)
..+|...+++++|+++|+++++...-
T Consensus 67 ~~FPdp~~mi~~l~~~G~k~~l~i~P 92 (303)
T cd06592 67 TKFPDPKGMIDQLHDLGFRVTLWVHP 92 (303)
T ss_pred hhCCCHHHHHHHHHHCCCeEEEEECC
Confidence 36788999999999999999886654
No 234
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=71.10 E-value=20 Score=26.45 Aligned_cols=59 Identities=15% Similarity=0.259 Sum_probs=43.0
Q ss_pred CCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHH
Q 036571 98 GREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTEN 177 (251)
Q Consensus 98 ~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~ 177 (251)
+.+.+++|+-++-.= ....+-...++++.++++|.++.++.-++ ...+
T Consensus 38 ~~~~vilDls~v~~i---------------------------Dssgi~~L~~~~~~~~~~g~~l~l~~~~~-----~v~~ 85 (106)
T TIGR02886 38 PIKHLILNLKNVTFM---------------------------DSSGLGVILGRYKKIKNEGGEVIVCNVSP-----AVKR 85 (106)
T ss_pred CCCEEEEECCCCcEe---------------------------cchHHHHHHHHHHHHHHcCCEEEEEeCCH-----HHHH
Confidence 467899999884331 13345556678889999999999877665 6678
Q ss_pred HHHhcCCCCcc
Q 036571 178 NLKNVGFYTWE 188 (251)
Q Consensus 178 ~L~~~G~~~~~ 188 (251)
.|+..|+....
T Consensus 86 ~l~~~gl~~~~ 96 (106)
T TIGR02886 86 LFELSGLFKII 96 (106)
T ss_pred HHHHhCCceEE
Confidence 88889986543
No 235
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=69.57 E-value=8.7 Score=30.89 Aligned_cols=53 Identities=15% Similarity=0.135 Sum_probs=37.7
Q ss_pred EEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHH
Q 036571 101 IWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLK 180 (251)
Q Consensus 101 avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~ 180 (251)
..++|+||.+++... .--...-++++.+.+.|.++++.|.-... ..+++.|.
T Consensus 45 iAildL~G~~l~l~S--------------------------~R~~~~~evi~~I~~~G~PviVAtDV~p~--P~~V~Kia 96 (138)
T PF04312_consen 45 IAILDLDGELLDLKS--------------------------SRNMSRSEVIEWISEYGKPVIVATDVSPP--PETVKKIA 96 (138)
T ss_pred EEEEecCCcEEEEEe--------------------------ecCCCHHHHHHHHHHcCCEEEEEecCCCC--cHHHHHHH
Confidence 457999999998521 11223457788899999999999997653 45666665
Q ss_pred h
Q 036571 181 N 181 (251)
Q Consensus 181 ~ 181 (251)
+
T Consensus 97 ~ 97 (138)
T PF04312_consen 97 R 97 (138)
T ss_pred H
Confidence 5
No 236
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=69.26 E-value=36 Score=31.11 Aligned_cols=41 Identities=15% Similarity=0.128 Sum_probs=30.8
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCC
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGF 184 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~ 184 (251)
+....|...++++.++++|+.++++||-.- ....+.| ..+.
T Consensus 140 EPlL~p~l~eli~~~k~~Gi~~~L~TNG~~---~e~l~~L-~~~~ 180 (322)
T PRK13762 140 EPTLYPYLPELIEEFHKRGFTTFLVTNGTR---PDVLEKL-EEEP 180 (322)
T ss_pred cccchhhHHHHHHHHHHcCCCEEEECCCCC---HHHHHHH-HhcC
Confidence 344567899999999999999999999862 3455566 3344
No 237
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=69.08 E-value=8.9 Score=30.60 Aligned_cols=80 Identities=20% Similarity=0.300 Sum_probs=48.6
Q ss_pred CCcEEEEecCCCccCChhhHhhhc--CCCCCCChHHHHHHHhcC-CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHH
Q 036571 98 GREIWIFDIDETSLSNLPYYAKHG--FGVEPFNSTLFNEWVNKG-EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSV 174 (251)
Q Consensus 98 ~~~avvfDIDgTlldn~~~~~~~~--~~~~~~~~~~~~~wv~~~-~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~ 174 (251)
.++++.||+|=|++.-. ...+ +.-.+|- .+.-..+ +..-++.+...|..|+++|++++.+|+.... +.
T Consensus 4 ~p~~~~fdldytiwP~~---vdthl~~pfkP~k----~~~g~~g~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap--~i 74 (144)
T KOG4549|consen 4 KPEAMQFDLDYTIWPRL---VDTHLDYPFKPFK----CECGSKGEEMIFYDDIRRILVDLKKLGVTLIHASRTMAP--QI 74 (144)
T ss_pred CCceeEEeccceeeeEE---EEecccccccccc----cCcccCcceeeeccchhHHHHHHHhcCcEEEEecCCCCH--HH
Confidence 56788999998887521 1100 1101110 0000111 3456889999999999999999999987643 34
Q ss_pred HHHHHHhcCCCC
Q 036571 175 TENNLKNVGFYT 186 (251)
Q Consensus 175 T~~~L~~~G~~~ 186 (251)
..+.|+.+-++.
T Consensus 75 A~q~L~~fkvk~ 86 (144)
T KOG4549|consen 75 ASQGLETFKVKQ 86 (144)
T ss_pred HHHHHHHhccCc
Confidence 445666665554
No 238
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=68.72 E-value=4.7 Score=36.10 Aligned_cols=43 Identities=23% Similarity=0.354 Sum_probs=25.6
Q ss_pred CCCccccchHHHHHHHHhcCccEEEEEcCCc-ccccccc-ccCcEE
Q 036571 198 SGETAVVYKSSERKRLEKKGYRIIGNIGDQW-SDLLGTN-AGNRTF 241 (251)
Q Consensus 198 ~~kp~~~~K~~~r~~L~~~g~~i~~~VGDq~-sDi~ga~-~g~r~f 241 (251)
-+||.+..-....+.+... ...+++|||+. +||.+|. +|+.++
T Consensus 188 ~GKP~~~i~~~al~~~~~~-~~~~~mVGD~~~TDI~~a~~~G~~t~ 232 (269)
T COG0647 188 IGKPSPAIYEAALEKLGLD-RSEVLMVGDRLDTDILGAKAAGLDTL 232 (269)
T ss_pred cCCCCHHHHHHHHHHhCCC-cccEEEEcCCchhhHHHHHHcCCCEE
Confidence 4677554322222333221 13689999999 9999994 465544
No 239
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=68.28 E-value=3.3 Score=36.90 Aligned_cols=85 Identities=16% Similarity=0.182 Sum_probs=54.6
Q ss_pred cCCCCcEEEEecCCCccCChhhHh---hhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccc
Q 036571 95 AGDGREIWIFDIDETSLSNLPYYA---KHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQ 171 (251)
Q Consensus 95 ~~~~~~avvfDIDgTlldn~~~~~---~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~ 171 (251)
...+++.+|+|+|+||..++.... ...|.. +..++.....--....|++-+|+..+-+. +.+++-|+..+..
T Consensus 85 ~~~~kk~lVLDLDeTLvHss~~~~~~~~~d~~~----~v~~~~~~~~~yV~kRP~vdeFL~~~s~~-~e~v~FTAs~~~Y 159 (262)
T KOG1605|consen 85 ATVGRKTLVLDLDETLVHSSLNLKPIVNADFTV----PVEIDGHIHQVYVRKRPHVDEFLSRVSKW-YELVLFTASLEVY 159 (262)
T ss_pred ccCCCceEEEeCCCcccccccccCCCCCcceee----eeeeCCcceEEEEEcCCCHHHHHHHhHHH-HHHHHHHhhhHHH
Confidence 457889999999999887642100 001110 00000000001134679999999998877 8999999998888
Q ss_pred HHHHHHHHHh-cCC
Q 036571 172 RSVTENNLKN-VGF 184 (251)
Q Consensus 172 r~~T~~~L~~-~G~ 184 (251)
.......|.. .|+
T Consensus 160 a~~v~D~LD~~~~i 173 (262)
T KOG1605|consen 160 ADPLLDILDPDRKI 173 (262)
T ss_pred HHHHHHHccCCCCe
Confidence 8888888886 454
No 240
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=67.78 E-value=29 Score=31.58 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHCCCeEEEEeCCCc
Q 036571 145 PESLKLYKKLLSLGIKIVFLTGRPE 169 (251)
Q Consensus 145 pga~ell~~L~~~G~~I~~vTnR~e 169 (251)
+-....+++|++-|+ .+++||++.
T Consensus 168 ~KL~kA~~yLqnP~c-lflatn~D~ 191 (306)
T KOG2882|consen 168 PKLMKALNYLQNPGC-LFLATNRDA 191 (306)
T ss_pred HHHHHHHHHhCCCCc-EEEeccCcc
Confidence 344557788886665 568899884
No 241
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=66.53 E-value=10 Score=34.44 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=35.6
Q ss_pred CCCCchHHHHHHHHHHHCC-CeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeC
Q 036571 140 EAPSLPESLKLYKKLLSLG-IKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKG 194 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G-~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~ 194 (251)
+.+..|..-++++.+++.| +++++|||.+ .....+.|. .+ +.++++=
T Consensus 90 EPTLy~~L~elI~~~k~~g~~~tflvTNgs---lpdv~~~L~---~~--dql~~sL 137 (296)
T COG0731 90 EPTLYPNLGELIEEIKKRGKKTTFLVTNGS---LPDVLEELK---LP--DQLYVSL 137 (296)
T ss_pred CcccccCHHHHHHHHHhcCCceEEEEeCCC---hHHHHHHhc---cC--CEEEEEe
Confidence 5778999999999999999 7999999998 444455554 33 4555543
No 242
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=66.38 E-value=23 Score=37.70 Aligned_cols=46 Identities=11% Similarity=0.039 Sum_probs=32.8
Q ss_pred HHHHHHHHHH----HCCCeEEEEeCCCcccHHHHHHHHHhcCCCC-cceEEEeC
Q 036571 146 ESLKLYKKLL----SLGIKIVFLTGRPEDQRSVTENNLKNVGFYT-WENLILKG 194 (251)
Q Consensus 146 ga~ell~~L~----~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~-~~~lilr~ 194 (251)
.+.++++.++ ...+.++|+|||+ ...+.+.|++.|++. .++.++++
T Consensus 788 ~l~~~~~~~~~~~~~~~igfv~aTGR~---l~~~~~~l~~~~lp~~~PD~lI~~ 838 (1050)
T TIGR02468 788 IIKNIFEAVRKERMEGSSGFILSTSMT---ISEIQSFLKSGGLNPTDFDALICN 838 (1050)
T ss_pred HHHHHHHHHhccccCCceEEEEEcCCC---HHHHHHHHHhCCCCCCCCCEEEeC
Confidence 3455566665 2337889999999 888999999999982 35555543
No 243
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=66.33 E-value=23 Score=25.21 Aligned_cols=56 Identities=18% Similarity=0.306 Sum_probs=40.7
Q ss_pred CcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHH
Q 036571 99 REIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENN 178 (251)
Q Consensus 99 ~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~ 178 (251)
.+.++||+.++-.- ....+--..++.+.++++|.++.+..-++ ...+.
T Consensus 38 ~~~viid~~~v~~i---------------------------Ds~g~~~L~~l~~~~~~~g~~v~i~~~~~-----~~~~~ 85 (99)
T cd07043 38 PRRLVLDLSGVTFI---------------------------DSSGLGVLLGAYKRARAAGGRLVLVNVSP-----AVRRV 85 (99)
T ss_pred CCEEEEECCCCCEE---------------------------cchhHHHHHHHHHHHHHcCCeEEEEcCCH-----HHHHH
Confidence 67899999984331 13455567788899999999977776654 55677
Q ss_pred HHhcCCCC
Q 036571 179 LKNVGFYT 186 (251)
Q Consensus 179 L~~~G~~~ 186 (251)
|+..|+..
T Consensus 86 l~~~gl~~ 93 (99)
T cd07043 86 LELTGLDR 93 (99)
T ss_pred HHHhCcce
Confidence 78888864
No 244
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=66.09 E-value=4.6 Score=30.46 Aligned_cols=58 Identities=17% Similarity=0.318 Sum_probs=43.1
Q ss_pred CCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHH
Q 036571 98 GREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTEN 177 (251)
Q Consensus 98 ~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~ 177 (251)
..+.+|||+.+.-.= + ...+....++.+.++.+|.+++|+.-++ ...+
T Consensus 47 ~~~~vIlD~s~v~~i---------------D------------ssgi~~L~~~~~~~~~~g~~~~l~~~~~-----~v~~ 94 (117)
T PF01740_consen 47 TIKNVILDMSGVSFI---------------D------------SSGIQALVDIIKELRRRGVQLVLVGLNP-----DVRR 94 (117)
T ss_dssp SSSEEEEEETTESEE---------------S------------HHHHHHHHHHHHHHHHTTCEEEEESHHH-----HHHH
T ss_pred cceEEEEEEEeCCcC---------------C------------HHHHHHHHHHHHHHHHCCCEEEEEECCH-----HHHH
Confidence 368999999995321 1 2345567888999999999999987765 5666
Q ss_pred HHHhcCCCCc
Q 036571 178 NLKNVGFYTW 187 (251)
Q Consensus 178 ~L~~~G~~~~ 187 (251)
.|...|+...
T Consensus 95 ~l~~~~~~~~ 104 (117)
T PF01740_consen 95 ILERSGLIDF 104 (117)
T ss_dssp HHHHTTGHHH
T ss_pred HHHHcCCChh
Confidence 7888888653
No 245
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=64.69 E-value=73 Score=28.24 Aligned_cols=72 Identities=13% Similarity=0.056 Sum_probs=43.1
Q ss_pred HHHHHHC-CCeEEEEeCCCcccHHHHHHHHHhc--CCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCccEEEEEcCC
Q 036571 151 YKKLLSL-GIKIVFLTGRPEDQRSVTENNLKNV--GFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRIIGNIGDQ 227 (251)
Q Consensus 151 l~~L~~~-G~~I~~vTnR~e~~r~~T~~~L~~~--G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i~~~VGDq 227 (251)
|++..++ ++.+.++++...-..+...+..... .+...+-+++++....+ .....|+.+.+.|. .++.|||.
T Consensus 23 lDErAdRedI~vrv~gsGaKm~pe~~~~~~~~~~~~~~pDf~i~isPN~a~P-----GP~~ARE~l~~~~i-P~IvI~D~ 96 (277)
T PRK00994 23 LDERADREDIDVRVVGSGAKMGPEEVEEVVKKMLEEWKPDFVIVISPNPAAP-----GPKKAREILKAAGI-PCIVIGDA 96 (277)
T ss_pred HHhhhcccCceEEEeccCCCCCHHHHHHHHHHHHHhhCCCEEEEECCCCCCC-----CchHHHHHHHhcCC-CEEEEcCC
Confidence 4444444 8999999998765555444333332 33333455666554322 23456777777666 57889998
Q ss_pred c
Q 036571 228 W 228 (251)
Q Consensus 228 ~ 228 (251)
+
T Consensus 97 p 97 (277)
T PRK00994 97 P 97 (277)
T ss_pred C
Confidence 8
No 246
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=64.60 E-value=37 Score=24.83 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=42.0
Q ss_pred CCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHH
Q 036571 98 GREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTEN 177 (251)
Q Consensus 98 ~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~ 177 (251)
..+.+|+|+-++-.- ....+-...++++.++++|.++.++.-++ ...+
T Consensus 38 ~~~~vilDls~v~~i---------------------------Dssgl~~L~~l~~~~~~~g~~l~l~~~~~-----~v~~ 85 (100)
T cd06844 38 AGKTIVIDISALEFM---------------------------DSSGTGVLLERSRLAEAVGGQFVLTGISP-----AVRI 85 (100)
T ss_pred CCCEEEEECCCCcEE---------------------------cHHHHHHHHHHHHHHHHcCCEEEEECCCH-----HHHH
Confidence 467999999874331 13345567788899999999999887665 5677
Q ss_pred HHHhcCCCC
Q 036571 178 NLKNVGFYT 186 (251)
Q Consensus 178 ~L~~~G~~~ 186 (251)
.|+..|+..
T Consensus 86 ~l~~~gl~~ 94 (100)
T cd06844 86 TLTESGLDK 94 (100)
T ss_pred HHHHhCchh
Confidence 888888754
No 247
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=63.39 E-value=29 Score=25.73 Aligned_cols=58 Identities=19% Similarity=0.249 Sum_probs=42.5
Q ss_pred CCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHH
Q 036571 97 DGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTE 176 (251)
Q Consensus 97 ~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~ 176 (251)
.+.+.+|+|+-++-.-. ...+.-..++++.++.+|.++.++--++ ...
T Consensus 39 ~~~~~vvlDls~v~~iD---------------------------ssg~~~l~~~~~~~~~~g~~l~l~g~~~-----~v~ 86 (109)
T cd07041 39 RRARGVIIDLTGVPVID---------------------------SAVARHLLRLARALRLLGARTILTGIRP-----EVA 86 (109)
T ss_pred cCCCEEEEECCCCchhc---------------------------HHHHHHHHHHHHHHHHcCCeEEEEeCCH-----HHH
Confidence 35679999998854321 2344456778889999999999887765 567
Q ss_pred HHHHhcCCCC
Q 036571 177 NNLKNVGFYT 186 (251)
Q Consensus 177 ~~L~~~G~~~ 186 (251)
+.|+..|+..
T Consensus 87 ~~l~~~gl~~ 96 (109)
T cd07041 87 QTLVELGIDL 96 (109)
T ss_pred HHHHHhCCCh
Confidence 7888889865
No 248
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=62.31 E-value=30 Score=25.40 Aligned_cols=57 Identities=19% Similarity=0.356 Sum_probs=40.8
Q ss_pred CCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHH
Q 036571 98 GREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTEN 177 (251)
Q Consensus 98 ~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~ 177 (251)
+.+.++||+.+.-.-. ...+--..++++.++++|..+.++.-++ ...+
T Consensus 42 ~~~~vvidls~v~~iD---------------------------ssgl~~L~~~~~~~~~~~~~~~l~~~~~-----~~~~ 89 (108)
T TIGR00377 42 GPRPIVLDLEDLEFMD---------------------------SSGLGVLLGRYKQVRRVGGQLVLVSVSP-----RVAR 89 (108)
T ss_pred CCCeEEEECCCCeEEc---------------------------cccHHHHHHHHHHHHhcCCEEEEEeCCH-----HHHH
Confidence 5778999999843321 3445556778888999999877766554 5667
Q ss_pred HHHhcCCCC
Q 036571 178 NLKNVGFYT 186 (251)
Q Consensus 178 ~L~~~G~~~ 186 (251)
.|+..|+..
T Consensus 90 ~l~~~~l~~ 98 (108)
T TIGR00377 90 LLDITGLLR 98 (108)
T ss_pred HHHHhChhh
Confidence 788888865
No 249
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=60.86 E-value=22 Score=31.39 Aligned_cols=57 Identities=16% Similarity=0.260 Sum_probs=41.2
Q ss_pred CChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCC
Q 036571 127 FNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYT 186 (251)
Q Consensus 127 ~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~ 186 (251)
++.....+-++.......+|+.+|++.|+++++++.+.|+.- -+..+.-|++.|...
T Consensus 75 l~k~~i~~~V~~s~i~LRdg~~~~f~~L~~~~IP~lIFSAGl---gdvI~~vL~q~~~~~ 131 (246)
T PF05822_consen 75 LTKSEIEEAVKESDIMLRDGVEEFFDKLEEHNIPLLIFSAGL---GDVIEEVLRQAGVFH 131 (246)
T ss_dssp -BGGGHHHHHHCS---B-BTHHHHHHHHHCTT--EEEEEEEE---HHHHHHHHHHTT--B
T ss_pred cCHHHHHHHHHhcchhhhcCHHHHHHHHHhcCCCEEEEeCCc---HHHHHHHHHHcCCCC
Confidence 455667777777888999999999999999999999999876 778888999887653
No 250
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=60.31 E-value=16 Score=31.15 Aligned_cols=45 Identities=18% Similarity=0.114 Sum_probs=39.1
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCC
Q 036571 141 APSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYT 186 (251)
Q Consensus 141 ~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~ 186 (251)
.-++.++-++-+.+++.+++++++|=..+. .+.+.+.|.++|+.+
T Consensus 129 ~v~V~~~d~le~~v~~~dv~iaiLtVPa~~-AQ~vad~Lv~aGVkG 173 (211)
T COG2344 129 DVPVYDLDDLEKFVKKNDVEIAILTVPAEH-AQEVADRLVKAGVKG 173 (211)
T ss_pred CeeeechHHHHHHHHhcCccEEEEEccHHH-HHHHHHHHHHcCCce
Confidence 467888999999999999999999997755 778889999999976
No 251
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=59.90 E-value=24 Score=29.42 Aligned_cols=65 Identities=17% Similarity=0.105 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhhhcCCCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCe
Q 036571 81 VAYEAIVYAQSLELAGDGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIK 160 (251)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~ 160 (251)
...||..+.+.++..+...+.+++||..+ .+.. .-+. .....-+.++++.+++.|++
T Consensus 69 ~~~Qa~~f~~~~~~~~~~~~~i~lDiE~~--~~~~----------~~~~-----------~~~~~~~~~f~~~~~~~G~~ 125 (196)
T cd06416 69 AAGQVQTFLQYLKANGIKYGTVWIDIEQN--PCQW----------SSDV-----------ASNCQFLQELVSAAKALGLK 125 (196)
T ss_pred HHHHHHHHHHHHHhCCCceeEEEEEEecC--CCCC----------cCCH-----------HHHHHHHHHHHHHHHHhCCe
Confidence 45788888877765433445677999975 1100 0000 11223467888999999999
Q ss_pred EEEEeCCC
Q 036571 161 IVFLTGRP 168 (251)
Q Consensus 161 I~~vTnR~ 168 (251)
++|-|+..
T Consensus 126 ~~iYt~~~ 133 (196)
T cd06416 126 VGIYSSQY 133 (196)
T ss_pred EEEEcCcc
Confidence 99999986
No 252
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=59.84 E-value=33 Score=29.60 Aligned_cols=88 Identities=16% Similarity=0.041 Sum_probs=46.3
Q ss_pred CCCeEEEEeCCCc--ccHHHHHHHHHhcCCCCcceEEEeCCCC-CCCccccchH-HHHHHHHhcC--ccEEEEEcCCccc
Q 036571 157 LGIKIVFLTGRPE--DQRSVTENNLKNVGFYTWENLILKGSSY-SGETAVVYKS-SERKRLEKKG--YRIIGNIGDQWSD 230 (251)
Q Consensus 157 ~G~~I~~vTnR~e--~~r~~T~~~L~~~G~~~~~~lilr~~~~-~~kp~~~~K~-~~r~~L~~~g--~~i~~~VGDq~sD 230 (251)
.-+++.+...... .......+.|...|+.. .++.++... .-.|...-|. +++.-++..| ...++.+||+.+|
T Consensus 118 ~~~k~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~~~~ldi~~~~~~K~~al~~l~~~~~i~~~~~i~~GD~~ND 195 (249)
T TIGR01485 118 RPHKVSFFLDPEAAPEVIKQLTEMLKETGLDV--KLIYSSGKDLDILPQGSGKGQALQYLLQKLAMEPSQTLVCGDSGND 195 (249)
T ss_pred CCeeEEEEechhhhhHHHHHHHHHHHhcCCCE--EEEEECCceEEEEeCCCChHHHHHHHHHHcCCCccCEEEEECChhH
Confidence 3467777765432 11334456666666543 333333110 0000001233 3333233334 3468999999999
Q ss_pred cccccc-cCcEEEeCCC
Q 036571 231 LLGTNA-GNRTFKLPDP 246 (251)
Q Consensus 231 i~ga~~-g~r~f~lPnp 246 (251)
+.-... +...+...|.
T Consensus 196 ~~ml~~~~~~~va~~na 212 (249)
T TIGR01485 196 IELFEIGSVRGVIVSNA 212 (249)
T ss_pred HHHHHccCCcEEEECCC
Confidence 998865 6677877774
No 253
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=59.54 E-value=48 Score=28.84 Aligned_cols=80 Identities=16% Similarity=0.149 Sum_probs=46.6
Q ss_pred CCCCCchHHHHHHHHHHHCCCe---EEEEeCCC----cccHHHHHHHHHhcCCC-CcceEEEeCCCCCCCccccchHHHH
Q 036571 139 GEAPSLPESLKLYKKLLSLGIK---IVFLTGRP----EDQRSVTENNLKNVGFY-TWENLILKGSSYSGETAVVYKSSER 210 (251)
Q Consensus 139 ~~~~~~pga~ell~~L~~~G~~---I~~vTnR~----e~~r~~T~~~L~~~G~~-~~~~lilr~~~~~~kp~~~~K~~~r 210 (251)
+.-.-.|..+++++.+++.|-+ +.++|..- ..+-....+.+++.|++ .+-++|+-+.+..+++...|-+.+.
T Consensus 8 g~~~~n~~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~~~yl~~l~ 87 (223)
T PF06415_consen 8 GSFFKNPVLLEAIEHAKKNGGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTDGRDTPPKSALKYLEELE 87 (223)
T ss_dssp TGGGTSHHHHHHHHHHCCTT--EEEEEEESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-TTTHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHhcCCeEEEEEEecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCcchHHHHHHHHH
Confidence 3344556677777777776544 34666653 22345566777778876 3467777777766666666766666
Q ss_pred HHHHhcCc
Q 036571 211 KRLEKKGY 218 (251)
Q Consensus 211 ~~L~~~g~ 218 (251)
..+.+.|.
T Consensus 88 ~~l~~~~~ 95 (223)
T PF06415_consen 88 EKLAEIGI 95 (223)
T ss_dssp HHHHHHTC
T ss_pred HHHHhhCC
Confidence 66666555
No 254
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=59.31 E-value=6.3 Score=34.24 Aligned_cols=44 Identities=23% Similarity=0.240 Sum_probs=27.8
Q ss_pred CCCccccchHHHHHHHHhcCccEEEEEcCCc-cccccc-cccCcEEE
Q 036571 198 SGETAVVYKSSERKRLEKKGYRIIGNIGDQW-SDLLGT-NAGNRTFK 242 (251)
Q Consensus 198 ~~kp~~~~K~~~r~~L~~~g~~i~~~VGDq~-sDi~ga-~~g~r~f~ 242 (251)
-+||.+.|.+...+.+. -....+++|||.. .|+.|+ ..|+|-+.
T Consensus 179 vGKP~~~fFe~al~~~g-v~p~~aVMIGDD~~dDvgGAq~~GMrgil 224 (262)
T KOG3040|consen 179 VGKPSPFFFESALQALG-VDPEEAVMIGDDLNDDVGGAQACGMRGIL 224 (262)
T ss_pred ecCCCHHHHHHHHHhcC-CChHHheEEccccccchhhHhhhcceeEE
Confidence 47777777655444442 1234688999999 667666 34777553
No 255
>PF13701 DDE_Tnp_1_4: Transposase DDE domain group 1
Probab=58.71 E-value=81 Score=30.25 Aligned_cols=19 Identities=21% Similarity=0.102 Sum_probs=15.7
Q ss_pred CCCcEEEEecCCCccCChh
Q 036571 97 DGREIWIFDIDETSLSNLP 115 (251)
Q Consensus 97 ~~~~avvfDIDgTlldn~~ 115 (251)
..++.|++|||.|+.++..
T Consensus 137 ~~~~~i~LDiD~T~~~~~G 155 (448)
T PF13701_consen 137 KPPKEIVLDIDSTVDDVHG 155 (448)
T ss_pred cccceEEEecccccccchh
Confidence 4578999999999988654
No 256
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=58.45 E-value=75 Score=33.18 Aligned_cols=58 Identities=21% Similarity=0.214 Sum_probs=39.5
Q ss_pred CCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCc
Q 036571 97 DGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPE 169 (251)
Q Consensus 97 ~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e 169 (251)
+-++...||+|.--...... .-.|. ..--+||-+.+.+....+++.|++++.+|++..
T Consensus 560 ~~p~~~~f~~d~~n~p~~nl---~FlGl------------~s~idPPR~~vP~Av~~CrsAGIkvimVTgdhp 617 (1019)
T KOG0203|consen 560 KFPRGFQFDTDDVNFPTDNL---RFLGL------------ISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHP 617 (1019)
T ss_pred cCCCceEeecCCCCCcchhc---cccch------------hhccCCCcccCchhhhhhhhhCceEEEEecCcc
Confidence 45678999998754433211 00110 011368888888889999999999999999974
No 257
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=58.12 E-value=16 Score=27.73 Aligned_cols=28 Identities=18% Similarity=0.149 Sum_probs=24.3
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCcc
Q 036571 143 SLPESLKLYKKLLSLGIKIVFLTGRPED 170 (251)
Q Consensus 143 ~~pga~ell~~L~~~G~~I~~vTnR~e~ 170 (251)
--+.+++.++.++++|.+++.+|+.+..
T Consensus 58 ~t~e~~~~~~~a~~~g~~vi~iT~~~~s 85 (126)
T cd05008 58 ETADTLAALRLAKEKGAKTVAITNVVGS 85 (126)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 4467999999999999999999998743
No 258
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=58.01 E-value=16 Score=27.78 Aligned_cols=30 Identities=30% Similarity=0.431 Sum_probs=25.5
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCcc
Q 036571 141 APSLPESLKLYKKLLSLGIKIVFLTGRPED 170 (251)
Q Consensus 141 ~~~~pga~ell~~L~~~G~~I~~vTnR~e~ 170 (251)
.---+.+.+.++.++++|.+++.+|+.+..
T Consensus 57 sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (128)
T cd05014 57 SGETDELLNLLPHLKRRGAPIIAITGNPNS 86 (128)
T ss_pred CCCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 345578999999999999999999998744
No 259
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=57.62 E-value=95 Score=27.52 Aligned_cols=100 Identities=15% Similarity=0.237 Sum_probs=59.6
Q ss_pred chhhhhhhhccchhhHhhHHHHHHHHHHHHHhhhhcCCCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcC
Q 036571 60 KCEGYLGHYMLGQQYREDSEAVAYEAIVYAQSLELAGDGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKG 139 (251)
Q Consensus 60 ~c~~~v~~y~~~~~Y~~d~~~~~~~a~~~~~~~~~~~~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~ 139 (251)
.|+-.+++|.+.+.|.+-++.-.+++.+-. .++.||..----+|+..| .|....++
T Consensus 218 r~kVEl~~gTeddeYLrkl~r~l~~sl~ef--------~Pd~VvYNAGTDiLeGDp------LG~L~ISp---------- 273 (324)
T KOG1344|consen 218 RCKVELRNGTEDDEYLRKLKRCLMQSLAEF--------RPDMVVYNAGTDILEGDP------LGNLAISP---------- 273 (324)
T ss_pred hheeeeecCCCchHHHHHHHHHHHHHHHhh--------CCcEEEEeCCCccccCCC------CCCeeecc----------
Confidence 566677888888888887777666664322 345666554333444433 12211111
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCc-----ccHHHHHHHHHhcCC
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPE-----DQRSVTENNLKNVGF 184 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e-----~~r~~T~~~L~~~G~ 184 (251)
.-.+.--...++..+.+|++++.+|+.-- ..-...+.||..+|+
T Consensus 274 -~Gi~~RDelVFr~~R~~~iPvvMltSGGY~K~sArvIaDSI~NL~~qGL 322 (324)
T KOG1344|consen 274 -EGIIERDELVFRTFRALGIPVVMLTSGGYLKASARVIADSIVNLRLQGL 322 (324)
T ss_pred -cccchhhHHHHHHHHHcCCcEEEEecCceehhhhhhhHHHHHhHhhhcc
Confidence 11222233457889999999999988642 223455778877776
No 260
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=54.66 E-value=21 Score=27.01 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=24.0
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCcc
Q 036571 143 SLPESLKLYKKLLSLGIKIVFLTGRPED 170 (251)
Q Consensus 143 ~~pga~ell~~L~~~G~~I~~vTnR~e~ 170 (251)
.-....+.++.++++|.+++.+|++.+.
T Consensus 65 ~~~~~~~~~~~ak~~g~~vi~iT~~~~~ 92 (131)
T PF01380_consen 65 ETRELIELLRFAKERGAPVILITSNSES 92 (131)
T ss_dssp TTHHHHHHHHHHHHTTSEEEEEESSTTS
T ss_pred cchhhhhhhHHHHhcCCeEEEEeCCCCC
Confidence 4467889999999999999999998743
No 261
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=54.27 E-value=35 Score=31.25 Aligned_cols=61 Identities=20% Similarity=0.287 Sum_probs=39.0
Q ss_pred HHHHHHHhhhhcCCCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEE
Q 036571 84 EAIVYAQSLELAGDGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVF 163 (251)
Q Consensus 84 ~a~~~~~~~~~~~~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~ 163 (251)
+....++.++..+=..++|++|+|=+ ++ ++ .|+ | ....+|...+++++|+++|+++++
T Consensus 25 ev~~~~~~~~~~~iP~d~i~lD~~~~--~~--------~~--~f~---~-------d~~~FPdp~~mi~~L~~~G~k~~~ 82 (339)
T cd06603 25 DVKEVDAGFDEHDIPYDVIWLDIEHT--DG--------KR--YFT---W-------DKKKFPDPEKMQEKLASKGRKLVT 82 (339)
T ss_pred HHHHHHHHHHHcCCCceEEEEChHHh--CC--------CC--ceE---e-------CcccCCCHHHHHHHHHHCCCEEEE
Confidence 34445555554455678899997732 11 11 111 2 134578889999999999999988
Q ss_pred EeC
Q 036571 164 LTG 166 (251)
Q Consensus 164 vTn 166 (251)
...
T Consensus 83 ~~~ 85 (339)
T cd06603 83 IVD 85 (339)
T ss_pred Eec
Confidence 765
No 262
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=53.59 E-value=20 Score=27.11 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHCCCeEEEEeCCCcc
Q 036571 145 PESLKLYKKLLSLGIKIVFLTGRPED 170 (251)
Q Consensus 145 pga~ell~~L~~~G~~I~~vTnR~e~ 170 (251)
+.+.++++.++++|.+++.+|++.+.
T Consensus 74 ~~~~~~~~~a~~~g~~iv~iT~~~~~ 99 (139)
T cd05013 74 KETVEAAEIAKERGAKVIAITDSANS 99 (139)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCC
Confidence 67889999999999999999998743
No 263
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=53.19 E-value=36 Score=30.90 Aligned_cols=60 Identities=18% Similarity=0.331 Sum_probs=37.5
Q ss_pred HHHHHHhhhhcCCCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEE
Q 036571 85 AIVYAQSLELAGDGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFL 164 (251)
Q Consensus 85 a~~~~~~~~~~~~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~v 164 (251)
....++.++..+=..+++++|+|=+ +. ++ .|+ |+ ...+|...++++.|+++|+++.+.
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~~~--~~--------~~--~f~---~d-------~~~FPdp~~~i~~l~~~g~k~~~~ 83 (317)
T cd06600 26 VVEVVDIMQKEGFPYDVVFLDIHYM--DS--------YR--LFT---WD-------PYRFPEPKKLIDELHKRNVKLVTI 83 (317)
T ss_pred HHHHHHHHHHcCCCcceEEEChhhh--CC--------CC--cee---ec-------hhcCCCHHHHHHHHHHCCCEEEEE
Confidence 3344444444445567899998653 11 11 111 21 345788899999999999999876
Q ss_pred eC
Q 036571 165 TG 166 (251)
Q Consensus 165 Tn 166 (251)
..
T Consensus 84 ~~ 85 (317)
T cd06600 84 VD 85 (317)
T ss_pred ee
Confidence 53
No 264
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=52.40 E-value=53 Score=30.21 Aligned_cols=59 Identities=15% Similarity=0.171 Sum_probs=38.1
Q ss_pred HHHHHhhhhcCCCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEe
Q 036571 86 IVYAQSLELAGDGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLT 165 (251)
Q Consensus 86 ~~~~~~~~~~~~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vT 165 (251)
...++.++..+=..+++++|+|=. ++ ++. |. |+ ...+|...+++++|+++|++++++.
T Consensus 27 ~~v~~~~r~~~IP~D~i~lDidy~--~~--------~~~--Ft---~d-------~~~FPdp~~mv~~L~~~G~klv~~i 84 (332)
T cd06601 27 EEVVEGYRDNNIPLDGLHVDVDFQ--DN--------YRT--FT---TN-------GGGFPNPKEMFDNLHNKGLKCSTNI 84 (332)
T ss_pred HHHHHHHHHcCCCCceEEEcCchh--cC--------CCc--ee---ec-------CCCCCCHHHHHHHHHHCCCeEEEEe
Confidence 344444444445678999999732 11 111 11 21 3567888999999999999998765
Q ss_pred C
Q 036571 166 G 166 (251)
Q Consensus 166 n 166 (251)
.
T Consensus 85 ~ 85 (332)
T cd06601 85 T 85 (332)
T ss_pred c
Confidence 4
No 265
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=52.11 E-value=97 Score=29.00 Aligned_cols=88 Identities=13% Similarity=0.072 Sum_probs=53.8
Q ss_pred CCeEEEEeCCCccc-----HHHHHHHHHhcCCCC--cceEEEeCCCCCCCccccchHHHHHHHHhcCcc---EEEEEcCC
Q 036571 158 GIKIVFLTGRPEDQ-----RSVTENNLKNVGFYT--WENLILKGSSYSGETAVVYKSSERKRLEKKGYR---IIGNIGDQ 227 (251)
Q Consensus 158 G~~I~~vTnR~e~~-----r~~T~~~L~~~G~~~--~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~---i~~~VGDq 227 (251)
+-+++++|.+.-.. .+...+.|+..|+.. +...+.-+++...|+....-......+.+.|.+ .++.+|=.
T Consensus 30 ~~r~lvVtD~~v~~~~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~~~~~r~~~IIalGGG 109 (369)
T cd08198 30 RPKVLVVIDSGVAQANPQLASDIQAYAAAHADALRLVAPPHIVPGGEACKNDPDLVEALHAAINRHGIDRHSYVIAIGGG 109 (369)
T ss_pred CCeEEEEECcchHHhhhhHHHHHHHHHHhcCCceeeeeeeEecCCCccCCChHHHHHHHHHHHHHcCCCcCcEEEEECCh
Confidence 46899999985332 256667787778532 234455555666665333223444555566665 67777775
Q ss_pred c-ccccccc-----ccCcEEEeCC
Q 036571 228 W-SDLLGTN-----AGNRTFKLPD 245 (251)
Q Consensus 228 ~-sDi~ga~-----~g~r~f~lPn 245 (251)
. .|+.+.- .|.+.+.+|-
T Consensus 110 ~v~D~ag~vA~~~~rGip~I~IPT 133 (369)
T cd08198 110 AVLDAVGYAAATAHRGVRLIRIPT 133 (369)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECC
Confidence 5 7887753 3677777774
No 266
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=51.34 E-value=11 Score=27.32 Aligned_cols=22 Identities=14% Similarity=0.324 Sum_probs=18.6
Q ss_pred CCcEEEEecCCCccCChhhHhh
Q 036571 98 GREIWIFDIDETSLSNLPYYAK 119 (251)
Q Consensus 98 ~~~avvfDIDgTlldn~~~~~~ 119 (251)
..-.++++-|||.+++..|+..
T Consensus 39 ~~~~lvL~eDGT~Vd~EeyF~~ 60 (78)
T cd06539 39 GLVTLVLEEDGTVVDTEEFFQT 60 (78)
T ss_pred CCcEEEEeCCCCEEccHHHHhh
Confidence 3578999999999999888754
No 267
>PRK10658 putative alpha-glucosidase; Provisional
Probab=51.03 E-value=51 Score=33.33 Aligned_cols=43 Identities=23% Similarity=0.310 Sum_probs=29.2
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCC
Q 036571 142 PSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGF 184 (251)
Q Consensus 142 ~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~ 184 (251)
..+|.-.+++++|+++|+++++..+-.-......-+...+.|+
T Consensus 322 ~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~~s~~f~e~~~~gy 364 (665)
T PRK10658 322 RTFPDPEGMLKRLKAKGLKICVWINPYIAQKSPLFKEGKEKGY 364 (665)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEeccCCcCCCchHHHHHHHCCe
Confidence 4577888999999999999998877532222233344455554
No 268
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=50.68 E-value=78 Score=28.68 Aligned_cols=44 Identities=18% Similarity=0.166 Sum_probs=28.7
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCC
Q 036571 141 APSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGF 184 (251)
Q Consensus 141 ~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~ 184 (251)
...+|...+++++|+++|+++++...-.-......-+.+.+.|+
T Consensus 69 ~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~g~ 112 (317)
T cd06599 69 KDRFPDPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEAGA 112 (317)
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHCCc
Confidence 35778899999999999999997554332111123344445554
No 269
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=50.63 E-value=26 Score=26.83 Aligned_cols=29 Identities=17% Similarity=0.130 Sum_probs=24.7
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCCcc
Q 036571 142 PSLPESLKLYKKLLSLGIKIVFLTGRPED 170 (251)
Q Consensus 142 ~~~pga~ell~~L~~~G~~I~~vTnR~e~ 170 (251)
.--+.+.+.++.++++|.+++.+|+....
T Consensus 58 G~t~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (120)
T cd05710 58 GNTKETVAAAKFAKEKGATVIGLTDDEDS 86 (120)
T ss_pred CCChHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 34577899999999999999999998754
No 270
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=50.29 E-value=52 Score=29.68 Aligned_cols=45 Identities=22% Similarity=0.358 Sum_probs=35.3
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCC
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYT 186 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~ 186 (251)
+..-.||+..+.+.|++.|.++.++|... ......+.++.++...
T Consensus 58 ETDGP~GA~aLa~aL~~lG~~~~ivtd~~--~~~~~~~~~~~~~~~~ 102 (291)
T PF14336_consen 58 ETDGPPGAAALARALQALGKEVVIVTDER--CAPVVKAAVRAAGLQG 102 (291)
T ss_pred CCCChHHHHHHHHHHHHcCCeEEEEECHH--HHHHHHHHHHHHhhCc
Confidence 35567999999999999999999999765 3556666666666654
No 271
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=50.27 E-value=1.3e+02 Score=23.86 Aligned_cols=81 Identities=10% Similarity=0.092 Sum_probs=47.8
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCc---ccHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCccEEEE
Q 036571 147 SLKLYKKLLSLGIKIVFLTGRPE---DQRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRIIGN 223 (251)
Q Consensus 147 a~ell~~L~~~G~~I~~vTnR~e---~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i~~~ 223 (251)
..++++..++.+..++.+|+=.. ..-..+.+.|++.|+.. ..+++.+...-+.. -....+..|.+.|+.-+.-
T Consensus 39 ~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~-v~vivGG~~~i~~~---d~~~~~~~L~~~Gv~~vf~ 114 (128)
T cd02072 39 QEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKD-ILLYVGGNLVVGKQ---DFEDVEKRFKEMGFDRVFA 114 (128)
T ss_pred HHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCC-CeEEEECCCCCChh---hhHHHHHHHHHcCCCEEEC
Confidence 45666777777888888877432 23466777888888865 56666654311110 1122345567778776555
Q ss_pred EcCCcccc
Q 036571 224 IGDQWSDL 231 (251)
Q Consensus 224 VGDq~sDi 231 (251)
-|+...++
T Consensus 115 pgt~~~~i 122 (128)
T cd02072 115 PGTPPEEA 122 (128)
T ss_pred cCCCHHHH
Confidence 55555444
No 272
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=49.80 E-value=24 Score=28.77 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=25.2
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCCcc
Q 036571 142 PSLPESLKLYKKLLSLGIKIVFLTGRPED 170 (251)
Q Consensus 142 ~~~pga~ell~~L~~~G~~I~~vTnR~e~ 170 (251)
.--+.+.++++.++++|.+++.+|+.+..
T Consensus 83 G~t~~~i~~~~~ak~~g~~ii~IT~~~~s 111 (179)
T TIGR03127 83 GETESLVTVAKKAKEIGATVAAITTNPES 111 (179)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 44578899999999999999999998754
No 273
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=49.77 E-value=35 Score=25.37 Aligned_cols=40 Identities=25% Similarity=0.389 Sum_probs=33.0
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCC
Q 036571 143 SLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFY 185 (251)
Q Consensus 143 ~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~ 185 (251)
.++...+++++++++|+.++.||..+ .+...++++..+++
T Consensus 44 ~l~~l~~~~~~~~~~~~~vi~is~d~---~~~~~~~~~~~~~~ 83 (124)
T PF00578_consen 44 ELPELNELYKKYKDKGVQVIGISTDD---PEEIKQFLEEYGLP 83 (124)
T ss_dssp HHHHHHHHHHHHHTTTEEEEEEESSS---HHHHHHHHHHHTCS
T ss_pred chhHHHHHhhhhccceEEeeeccccc---ccchhhhhhhhccc
Confidence 45778888899999999999999977 55778888888865
No 274
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=49.36 E-value=12 Score=26.82 Aligned_cols=21 Identities=14% Similarity=0.313 Sum_probs=18.0
Q ss_pred CcEEEEecCCCccCChhhHhh
Q 036571 99 REIWIFDIDETSLSNLPYYAK 119 (251)
Q Consensus 99 ~~avvfDIDgTlldn~~~~~~ 119 (251)
.-.++++-|||.+++..|+..
T Consensus 38 ~~~l~L~eDGT~VddEeyF~t 58 (74)
T smart00266 38 PVTLVLEEDGTIVDDEEYFQT 58 (74)
T ss_pred CcEEEEecCCcEEccHHHHhc
Confidence 568999999999999888753
No 275
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=48.78 E-value=13 Score=27.20 Aligned_cols=22 Identities=14% Similarity=0.318 Sum_probs=18.7
Q ss_pred CCcEEEEecCCCccCChhhHhh
Q 036571 98 GREIWIFDIDETSLSNLPYYAK 119 (251)
Q Consensus 98 ~~~avvfDIDgTlldn~~~~~~ 119 (251)
..-.++++-|||.+++..|+..
T Consensus 38 ~~~~lvLeeDGT~Vd~EeyF~t 59 (81)
T cd06537 38 GVLTLVLEEDGTAVDSEDFFEL 59 (81)
T ss_pred CceEEEEecCCCEEccHHHHhh
Confidence 3478999999999999888754
No 276
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=48.67 E-value=33 Score=26.69 Aligned_cols=63 Identities=16% Similarity=0.181 Sum_probs=36.3
Q ss_pred cchhhhheecccccccccccchhhhhhhhccchhhHhhHHHHHHHHHHH-HHhhhhcCCCCcEEEEe
Q 036571 40 LSWRLAVETNNIIGWKTTPEKCEGYLGHYMLGQQYREDSEAVAYEAIVY-AQSLELAGDGREIWIFD 105 (251)
Q Consensus 40 ~s~~~~~e~nn~~~~~~vp~~c~~~v~~y~~~~~Y~~d~~~~~~~a~~~-~~~~~~~~~~~~avvfD 105 (251)
.+=|+-.|++-=-+ .=|++....+++-+.+..|++.-..+. .|+.- .+.....=.+.+|||||
T Consensus 27 ~~~~le~~ls~~Lp--adp~qA~~~~~~rl~s~~~~~~q~~L~-~Ayqgv~~Aw~lgi~k~PAVVfD 90 (114)
T PF07511_consen 27 APERLEAELSAGLP--ADPQQAEAQARQRLQSPDWQQLQQQLA-QAYQGVVDAWSLGITKYPAVVFD 90 (114)
T ss_pred cHHHHHHHHhccCC--CChHHHHHHHHHHHcCccHHHHHHHHH-HHHHHHHHHHHhCccccCEEEEc
Confidence 34444445442222 457777788888899998876433332 22222 23233333678999999
No 277
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=48.40 E-value=48 Score=30.46 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=20.6
Q ss_pred CCchHH--HHHHHHHHHCCCeEEEEeC
Q 036571 142 PSLPES--LKLYKKLLSLGIKIVFLTG 166 (251)
Q Consensus 142 ~~~pga--~ell~~L~~~G~~I~~vTn 166 (251)
..+|.- .+++++|+++|+++++...
T Consensus 61 ~~FPdp~~~~mi~~L~~~G~k~~~~i~ 87 (339)
T cd06602 61 VRFPGLKMPEFVDELHANGQHYVPILD 87 (339)
T ss_pred ccCCCccHHHHHHHHHHCCCEEEEEEe
Confidence 345666 9999999999999998764
No 278
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=48.23 E-value=27 Score=27.44 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=37.9
Q ss_pred CcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCC
Q 036571 99 REIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRP 168 (251)
Q Consensus 99 ~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~ 168 (251)
.-.+.|=+||+-+-.- .+..+-..+++|...++++++++.|+++.+.+-.-
T Consensus 35 dV~iF~t~dG~~l~~K-------------------~~~ekik~~~~~~l~~~~~~a~e~GVk~yvCe~s~ 85 (120)
T COG2044 35 DVTIFFTMDGVTLVKK-------------------KVAEKIKHPNFPPLEELIKQAIEAGVKIYVCEQSL 85 (120)
T ss_pred ceEEEEEeccceeeee-------------------cchhhhcCCCCCCHHHHHHHHHHcCCEEEEEcchh
Confidence 3457789999777531 11122345888999999999999999999987655
No 279
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=47.94 E-value=56 Score=33.72 Aligned_cols=45 Identities=18% Similarity=0.318 Sum_probs=34.2
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCC
Q 036571 141 APSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFY 185 (251)
Q Consensus 141 ~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~ 185 (251)
..-+|....++++|+++|++++.+-+=.-......-+.+.+.|+-
T Consensus 317 ~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~ 361 (772)
T COG1501 317 PDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYF 361 (772)
T ss_pred cccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeE
Confidence 556788889999999999999998885544444556666677763
No 280
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=47.44 E-value=63 Score=29.53 Aligned_cols=60 Identities=23% Similarity=0.368 Sum_probs=37.9
Q ss_pred HHHHHHhhhhcCCCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEE
Q 036571 85 AIVYAQSLELAGDGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFL 164 (251)
Q Consensus 85 a~~~~~~~~~~~~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~v 164 (251)
....++.++..+=..+++.+|+|=+ + .++. |+ |+ ...+|...++++.|+++|+++.+.
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~~~--~--------~~~~--f~---~d-------~~~fPdp~~m~~~l~~~g~~~~~~ 83 (339)
T cd06604 26 VREIADEFRERDIPCDAIYLDIDYM--D--------GYRV--FT---WD-------KERFPDPKELIKELHEQGFKVVTI 83 (339)
T ss_pred HHHHHHHHHHhCCCcceEEECchhh--C--------CCCc--ee---ec-------cccCCCHHHHHHHHHHCCCEEEEE
Confidence 3344555554455668899998743 1 1111 11 21 346778899999999999999865
Q ss_pred eC
Q 036571 165 TG 166 (251)
Q Consensus 165 Tn 166 (251)
..
T Consensus 84 ~~ 85 (339)
T cd06604 84 ID 85 (339)
T ss_pred Ee
Confidence 53
No 281
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=46.18 E-value=30 Score=28.22 Aligned_cols=30 Identities=30% Similarity=0.403 Sum_probs=25.7
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCcc
Q 036571 141 APSLPESLKLYKKLLSLGIKIVFLTGRPED 170 (251)
Q Consensus 141 ~~~~pga~ell~~L~~~G~~I~~vTnR~e~ 170 (251)
...-+.++++++.++++|.+++.+|+.+..
T Consensus 111 SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s 140 (177)
T cd05006 111 SGNSPNVLKALEAAKERGMKTIALTGRDGG 140 (177)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 345689999999999999999999998743
No 282
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=45.98 E-value=15 Score=26.68 Aligned_cols=23 Identities=13% Similarity=0.329 Sum_probs=19.1
Q ss_pred CCCcEEEEecCCCccCChhhHhh
Q 036571 97 DGREIWIFDIDETSLSNLPYYAK 119 (251)
Q Consensus 97 ~~~~avvfDIDgTlldn~~~~~~ 119 (251)
...-.++++-|||.+++..|+..
T Consensus 38 ~~~~~lvL~eDGTeVddEeYF~t 60 (78)
T cd01615 38 SAPVTLVLEEDGTEVDDEEYFQT 60 (78)
T ss_pred CCCeEEEEeCCCcEEccHHHHhc
Confidence 35568999999999999988754
No 283
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=45.58 E-value=32 Score=26.15 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=23.2
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCC
Q 036571 142 PSLPESLKLYKKLLSLGIKIVFLTGRP 168 (251)
Q Consensus 142 ~~~pga~ell~~L~~~G~~I~~vTnR~ 168 (251)
---+.+++.++.++++|.+++.+|+..
T Consensus 54 G~t~e~i~~~~~a~~~g~~iI~IT~~~ 80 (119)
T cd05017 54 GNTEETLSAVEQAKERGAKIVAITSGG 80 (119)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 345788999999999999999999865
No 284
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=45.29 E-value=31 Score=24.90 Aligned_cols=32 Identities=34% Similarity=0.531 Sum_probs=24.5
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCC
Q 036571 147 SLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYT 186 (251)
Q Consensus 147 a~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~ 186 (251)
+.++.+.|.+.|++|+ .|.. |.+.|++.|++.
T Consensus 2 ~~~~~~~l~~lG~~i~-AT~g-------Ta~~L~~~Gi~~ 33 (90)
T smart00851 2 LVELAKRLAELGFELV-ATGG-------TAKFLREAGLPV 33 (90)
T ss_pred HHHHHHHHHHCCCEEE-EccH-------HHHHHHHCCCcc
Confidence 4678889999999995 5553 467888889864
No 285
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=45.10 E-value=15 Score=26.71 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=19.2
Q ss_pred CCCcEEEEecCCCccCChhhHhh
Q 036571 97 DGREIWIFDIDETSLSNLPYYAK 119 (251)
Q Consensus 97 ~~~~avvfDIDgTlldn~~~~~~ 119 (251)
...-.++++-|||.+++..|+..
T Consensus 40 ~~~~~lvL~eDGT~VddEeyF~t 62 (80)
T cd06536 40 SAPITLVLAEDGTIVEDEDYFLC 62 (80)
T ss_pred CCceEEEEecCCcEEccHHHHhh
Confidence 34678999999999999888754
No 286
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=45.00 E-value=1.5e+02 Score=23.29 Aligned_cols=76 Identities=11% Similarity=0.121 Sum_probs=43.1
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCccc---HHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCccEEEE
Q 036571 147 SLKLYKKLLSLGIKIVFLTGRPEDQ---RSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRIIGN 223 (251)
Q Consensus 147 a~ell~~L~~~G~~I~~vTnR~e~~---r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i~~~ 223 (251)
..++++..++.+..++.+|+-...+ -..+.+.|++.|... ..+++.+... ...+..+.+.|..-++.
T Consensus 42 ~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~-i~vivGG~~~---------~~~~~~l~~~Gvd~~~~ 111 (132)
T TIGR00640 42 PEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPD-ILVVVGGVIP---------PQDFDELKEMGVAEIFG 111 (132)
T ss_pred HHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCC-CEEEEeCCCC---------hHhHHHHHHCCCCEEEC
Confidence 3466667777778888887776433 344556666667542 2344443211 12234456677766666
Q ss_pred EcCCccccc
Q 036571 224 IGDQWSDLL 232 (251)
Q Consensus 224 VGDq~sDi~ 232 (251)
.|.+..++.
T Consensus 112 ~gt~~~~i~ 120 (132)
T TIGR00640 112 PGTPIPESA 120 (132)
T ss_pred CCCCHHHHH
Confidence 666665544
No 287
>PF09198 T4-Gluco-transf: Bacteriophage T4 beta-glucosyltransferase; InterPro: IPR015281 Members of this family are DNA-modifying enzymes encoded by bacteriophage T4 that transfer glucose from uridine diphosphoglucose to 5-hydroxymethyl cytosine bases of phage T4 DNA []. ; PDB: 1J39_A 1SXQ_B 1NZF_A 1M5R_B 1JEJ_A 1JIV_A 1NZD_A 1NVK_A 2BGU_A 1JIU_A ....
Probab=44.98 E-value=7.3 Score=23.57 Aligned_cols=13 Identities=54% Similarity=0.736 Sum_probs=9.2
Q ss_pred ecccccccccccc
Q 036571 48 TNNIIGWKTTPEK 60 (251)
Q Consensus 48 ~nn~~~~~~vp~~ 60 (251)
-||+.+++|+|+.
T Consensus 9 gnni~~fkt~p~s 21 (38)
T PF09198_consen 9 GNNIQNFKTTPSS 21 (38)
T ss_dssp SS--SSSSSHHHH
T ss_pred CCceeceeecCcc
Confidence 4899999999963
No 288
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=44.81 E-value=34 Score=27.46 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=24.3
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCcc
Q 036571 143 SLPESLKLYKKLLSLGIKIVFLTGRPED 170 (251)
Q Consensus 143 ~~pga~ell~~L~~~G~~I~~vTnR~e~ 170 (251)
--+.+.+.++.++++|.+++.+|+.+..
T Consensus 91 ~t~~~~~~~~~a~~~g~~ii~iT~~~~s 118 (154)
T TIGR00441 91 NSKNVLKAIEAAKDKGMKTITLAGKDGG 118 (154)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 4578899999999999999999998743
No 289
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=44.78 E-value=1e+02 Score=27.65 Aligned_cols=26 Identities=15% Similarity=0.371 Sum_probs=22.2
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeC
Q 036571 141 APSLPESLKLYKKLLSLGIKIVFLTG 166 (251)
Q Consensus 141 ~~~~pga~ell~~L~~~G~~I~~vTn 166 (251)
...+|...+++++|+++|+++++...
T Consensus 62 ~~~FPd~~~~i~~l~~~G~~~~~~~~ 87 (308)
T cd06593 62 PDRFPDPEGMLSRLKEKGFKVCLWIN 87 (308)
T ss_pred cccCCCHHHHHHHHHHCCCeEEEEec
Confidence 34677889999999999999998765
No 290
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=44.52 E-value=16 Score=26.57 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=18.2
Q ss_pred CcEEEEecCCCccCChhhHhh
Q 036571 99 REIWIFDIDETSLSNLPYYAK 119 (251)
Q Consensus 99 ~~avvfDIDgTlldn~~~~~~ 119 (251)
.-.++++-|||.+++..|+..
T Consensus 39 ~~~lvL~eDGT~Vd~EeyF~t 59 (79)
T cd06538 39 ISSLVLDEDGTGVDTEEFFQA 59 (79)
T ss_pred ccEEEEecCCcEEccHHHHhh
Confidence 478999999999999988754
No 291
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=43.76 E-value=35 Score=27.93 Aligned_cols=30 Identities=20% Similarity=0.351 Sum_probs=25.6
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCcc
Q 036571 141 APSLPESLKLYKKLLSLGIKIVFLTGRPED 170 (251)
Q Consensus 141 ~~~~pga~ell~~L~~~G~~I~~vTnR~e~ 170 (251)
..--+.++++++.++++|.+++.+|+....
T Consensus 85 sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s 114 (179)
T cd05005 85 SGETSSVVNAAEKAKKAGAKVVLITSNPDS 114 (179)
T ss_pred CCCcHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 345678899999999999999999998744
No 292
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=43.69 E-value=1.7e+02 Score=23.35 Aligned_cols=81 Identities=11% Similarity=0.089 Sum_probs=45.5
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCccc---HHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCccEEEE
Q 036571 147 SLKLYKKLLSLGIKIVFLTGRPEDQ---RSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRIIGN 223 (251)
Q Consensus 147 a~ell~~L~~~G~~I~~vTnR~e~~---r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i~~~ 223 (251)
..++++..++.+..++.+|+..... -..+.+.|++.|+.. ..+++.+...-+.+ -....+..+++.|+.-+.-
T Consensus 41 ~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~-~~vivGG~~vi~~~---d~~~~~~~l~~~Gv~~vF~ 116 (134)
T TIGR01501 41 QEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEG-ILLYVGGNLVVGKQ---DFPDVEKRFKEMGFDRVFA 116 (134)
T ss_pred HHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCCC-CEEEecCCcCcChh---hhHHHHHHHHHcCCCEEEC
Confidence 4566677778888888888765432 455677788888864 33445443211110 1122344566778765544
Q ss_pred EcCCcccc
Q 036571 224 IGDQWSDL 231 (251)
Q Consensus 224 VGDq~sDi 231 (251)
=|+.+.++
T Consensus 117 pgt~~~~i 124 (134)
T TIGR01501 117 PGTPPEVV 124 (134)
T ss_pred cCCCHHHH
Confidence 44444444
No 293
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=43.54 E-value=42 Score=26.08 Aligned_cols=62 Identities=10% Similarity=0.072 Sum_probs=34.8
Q ss_pred chhhhheecccccccccccchhhhhhhhccchhhHhhHHHHHHHHHHHH-HhhhhcCCCCcEEEEe
Q 036571 41 SWRLAVETNNIIGWKTTPEKCEGYLGHYMLGQQYREDSEAVAYEAIVYA-QSLELAGDGREIWIFD 105 (251)
Q Consensus 41 s~~~~~e~nn~~~~~~vp~~c~~~v~~y~~~~~Y~~d~~~~~~~a~~~~-~~~~~~~~~~~avvfD 105 (251)
+=|+-.|.+-=-+ +=|.+....+++-+.+.++.+ ...-...|+.-. +.-...=.+.+|||||
T Consensus 29 ~erle~~ls~~Lp--adp~qA~~~~~~~l~sp~~~~-~q~~l~~Ayqgv~~Aw~lGi~k~PAVV~D 91 (113)
T TIGR03757 29 PERLEAQLSAGLP--ADPQQAAAQARQRLQSPDWAR-LQRRLAQAYQGVADAWQLGVTKIPAVVVD 91 (113)
T ss_pred HHHHHHHHhccCC--CCHHHHHHHHHHHHcCccHHH-HHHHHHHHHHHHHHHHHcCCccCCEEEEc
Confidence 3344445442222 457778888999998877644 332223333332 2222223678999999
No 294
>PRK13937 phosphoheptose isomerase; Provisional
Probab=43.51 E-value=34 Score=28.45 Aligned_cols=29 Identities=34% Similarity=0.441 Sum_probs=25.0
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCCcc
Q 036571 142 PSLPESLKLYKKLLSLGIKIVFLTGRPED 170 (251)
Q Consensus 142 ~~~pga~ell~~L~~~G~~I~~vTnR~e~ 170 (251)
-.-+.+.+.++.++++|.+++.+|+.+..
T Consensus 117 G~t~~~~~~~~~ak~~g~~~I~iT~~~~s 145 (188)
T PRK13937 117 GNSPNVLAALEKARELGMKTIGLTGRDGG 145 (188)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 34688999999999999999999998743
No 295
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=43.28 E-value=66 Score=24.87 Aligned_cols=40 Identities=8% Similarity=-0.022 Sum_probs=32.2
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCC
Q 036571 143 SLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFY 185 (251)
Q Consensus 143 ~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~ 185 (251)
.+|...+++++++++|+.++.||..+ .+...+++++.+++
T Consensus 47 ~~~~l~~~~~~~~~~~v~vi~vs~d~---~~~~~~~~~~~~~~ 86 (149)
T cd03018 47 ELCALRDSLELFEAAGAEVLGISVDS---PFSLRAWAEENGLT 86 (149)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecCCC---HHHHHHHHHhcCCC
Confidence 56778888999999999999998765 45667788888875
No 296
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=42.92 E-value=52 Score=29.98 Aligned_cols=42 Identities=19% Similarity=0.366 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHCCC--eEEEEeCCCcccHHHHHHHHHhcCCCC
Q 036571 145 PESLKLYKKLLSLGI--KIVFLTGRPEDQRSVTENNLKNVGFYT 186 (251)
Q Consensus 145 pga~ell~~L~~~G~--~I~~vTnR~e~~r~~T~~~L~~~G~~~ 186 (251)
..++++++..++.|. +|++.=+||..+-..+.+.|+++|++.
T Consensus 130 ~~v~~~l~~A~~~~k~~~V~VtESRP~~eG~~~ak~L~~~gI~~ 173 (301)
T COG1184 130 KTVLEVLKTAADRGKRFKVIVTESRPRGEGRIMAKELRQSGIPV 173 (301)
T ss_pred HHHHHHHHHhhhcCCceEEEEEcCCCcchHHHHHHHHHHcCCce
Confidence 568899999999885 999999999988899999999999874
No 297
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=42.91 E-value=80 Score=27.71 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=31.5
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHH----HhcCCCC
Q 036571 141 APSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNL----KNVGFYT 186 (251)
Q Consensus 141 ~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L----~~~G~~~ 186 (251)
...+|...+++++|+++|+++++.+.-.- |+--.+.+ ...|+..
T Consensus 62 ~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v--~~w~~~~~~~~~~~~Gvdg 109 (265)
T cd06589 62 AGKFPNPKSMIDELHDNGVKLVLWIDPYI--REWWAEVVKKLLVSLGVDG 109 (265)
T ss_pred hhhCCCHHHHHHHHHHCCCEEEEEeChhH--HHHHHHHHHHhhccCCCCE
Confidence 34678889999999999999999888652 33333333 4457765
No 298
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=42.89 E-value=2.2e+02 Score=26.71 Aligned_cols=88 Identities=10% Similarity=0.112 Sum_probs=51.3
Q ss_pred CCeEEEEeCCCccc-----HHHHHHHHHhcCCCC--cceEEEeCCCCCCCccccchHHHHHHHHhcCcc---EEEEEcCC
Q 036571 158 GIKIVFLTGRPEDQ-----RSVTENNLKNVGFYT--WENLILKGSSYSGETAVVYKSSERKRLEKKGYR---IIGNIGDQ 227 (251)
Q Consensus 158 G~~I~~vTnR~e~~-----r~~T~~~L~~~G~~~--~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~---i~~~VGDq 227 (251)
+-++++||++.-.. .+...+.|...|+.. +...+.-..+...||.+..-......+.+.+.. .++.||-.
T Consensus 42 ~~r~liVtD~~v~~~~~~l~~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~~~~dr~d~IIaiGGG 121 (389)
T PRK06203 42 PKKVLVVIDSGVLRAHPDLLEQITAYFAAHADVLELVAEPLVVPGGEAAKNDPALVEALHAAINRHGIDRHSYVLAIGGG 121 (389)
T ss_pred CCeEEEEECchHHHhhhhHHHHHHHHHHhcCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHHcCCCCCceEEEeCCc
Confidence 46899999875321 245567777778743 233444445556665433233344455555654 77778775
Q ss_pred c-ccccccc-----ccCcEEEeCC
Q 036571 228 W-SDLLGTN-----AGNRTFKLPD 245 (251)
Q Consensus 228 ~-sDi~ga~-----~g~r~f~lPn 245 (251)
. .|+.+.- .|.+.+.+|-
T Consensus 122 sv~D~ak~iA~~~~rgip~I~IPT 145 (389)
T PRK06203 122 AVLDMVGYAAATAHRGVRLIRIPT 145 (389)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEcC
Confidence 5 7876652 2556666663
No 299
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=42.78 E-value=71 Score=30.08 Aligned_cols=78 Identities=17% Similarity=0.277 Sum_probs=42.0
Q ss_pred HHHHHHhhhhcCCCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEE
Q 036571 85 AIVYAQSLELAGDGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFL 164 (251)
Q Consensus 85 a~~~~~~~~~~~~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~v 164 (251)
....++.++..+=..+++++|.|-+- + ++ .|. | ....+|...++++.|+++|+++++.
T Consensus 45 v~~~i~~~~~~~iP~d~~~iD~~~~~--~--------~~--~f~---~-------d~~~FPd~~~~~~~l~~~G~~~~~~ 102 (441)
T PF01055_consen 45 VREVIDRYRSNGIPLDVIWIDDDYQD--G--------YG--DFT---W-------DPERFPDPKQMIDELHDQGIKVVLW 102 (441)
T ss_dssp HHHHHHHHHHTT--EEEEEE-GGGSB--T--------TB--TT----B--------TTTTTTHHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHHcCCCccceeccccccc--c--------cc--ccc---c-------ccccccchHHHHHhHhhCCcEEEEE
Confidence 33444444444445678999998322 1 11 111 1 2457889999999999999998865
Q ss_pred eCCCcccH---HHHHHHHHhcCC
Q 036571 165 TGRPEDQR---SVTENNLKNVGF 184 (251)
Q Consensus 165 TnR~e~~r---~~T~~~L~~~G~ 184 (251)
..-.-... ...-+.+.+.|+
T Consensus 103 ~~P~v~~~~~~~~~~~~~~~~~~ 125 (441)
T PF01055_consen 103 VHPFVSNDSPDYENYDEAKEKGY 125 (441)
T ss_dssp EESEEETTTTB-HHHHHHHHTT-
T ss_pred eecccCCCCCcchhhhhHhhcCc
Confidence 54321111 235566666666
No 300
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=42.36 E-value=54 Score=29.92 Aligned_cols=42 Identities=17% Similarity=0.231 Sum_probs=32.7
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCC
Q 036571 143 SLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFY 185 (251)
Q Consensus 143 ~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~ 185 (251)
..|...+++++++++|+.+.+.||..-- .+.+.+.|.+.|+.
T Consensus 66 l~~~~~~ii~~~~~~g~~~~l~TNG~ll-~~e~~~~L~~~g~~ 107 (358)
T TIGR02109 66 ARPDLVELVAHARRLGLYTNLITSGVGL-TEARLDALADAGLD 107 (358)
T ss_pred ccccHHHHHHHHHHcCCeEEEEeCCccC-CHHHHHHHHhCCCC
Confidence 3466789999999999999999997532 34567788888875
No 301
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=41.84 E-value=58 Score=27.06 Aligned_cols=68 Identities=6% Similarity=-0.050 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHC
Q 036571 78 SEAVAYEAIVYAQSLELAGDGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSL 157 (251)
Q Consensus 78 ~~~~~~~a~~~~~~~~~~~~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~ 157 (251)
......||..+.+.++..+. ...+++|++.+-..+. ..+. ......+.+|++++++.
T Consensus 69 ~~~a~~qA~~f~~~~~~~~~-~~~~~lD~E~~~~~~~-----------~~~~-----------~~~~~~~~~f~~~v~~~ 125 (191)
T cd06414 69 VAEAREEAEFVLRLIKGYKL-SYPVYYDLEDETQLGA-----------GLSK-----------DQRTDIANAFCETIEAA 125 (191)
T ss_pred HHHHHHHHHHHHHHhhccCC-CCCeEEEeecCCCCCC-----------CCCH-----------HHHHHHHHHHHHHHHHc
Confidence 34456788888777765432 2346789987532210 0011 12335578899999999
Q ss_pred CCeEEEEeCCC
Q 036571 158 GIKIVFLTGRP 168 (251)
Q Consensus 158 G~~I~~vTnR~ 168 (251)
|++++|=|++.
T Consensus 126 G~~~~iY~~~~ 136 (191)
T cd06414 126 GYYPGIYANLS 136 (191)
T ss_pred CCCeEEEecHH
Confidence 99999999987
No 302
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=41.71 E-value=79 Score=28.61 Aligned_cols=86 Identities=19% Similarity=0.159 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHC-CCe-EEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCCCC-CCccccchHHHHHHHHhcCccEEE
Q 036571 146 ESLKLYKKLLSL-GIK-IVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSSYS-GETAVVYKSSERKRLEKKGYRIIG 222 (251)
Q Consensus 146 ga~ell~~L~~~-G~~-I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~-~kp~~~~K~~~r~~L~~~g~~i~~ 222 (251)
=...+++.|++. ++. .+++||+. .....+-++.+|++....+.+...+.. .+.....-....+.+.+..++++.
T Consensus 15 ~~~p~~~~l~~~~~~~~~~~~tg~h---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiv~ 91 (365)
T TIGR00236 15 KMAPLIRALKKYPEIDSYVIVTAQH---REMLDQVLDLFHLPPDYDLNIMSPGQTLGEITSNMLEGLEELLLEEKPDIVL 91 (365)
T ss_pred HHHHHHHHHhhCCCCCEEEEEeCCC---HHHHHHHHHhcCCCCCeeeecCCCCCCHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 355677888876 443 57889987 445555555678763223333321110 010111122344456667789999
Q ss_pred EEcCCccccccc
Q 036571 223 NIGDQWSDLLGT 234 (251)
Q Consensus 223 ~VGDq~sDi~ga 234 (251)
..||..+-+.|+
T Consensus 92 ~~gd~~~~la~a 103 (365)
T TIGR00236 92 VQGDTTTTLAGA 103 (365)
T ss_pred EeCCchHHHHHH
Confidence 999987666554
No 303
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=41.58 E-value=93 Score=23.47 Aligned_cols=60 Identities=17% Similarity=0.258 Sum_probs=42.1
Q ss_pred CCCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHH
Q 036571 96 GDGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVT 175 (251)
Q Consensus 96 ~~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T 175 (251)
..+.+.+|+|+.++-.-. ...+--...+++.++..|.+++++.-++ ..
T Consensus 41 ~~~~~~ivIDls~v~~~d---------------------------S~gl~~L~~~~~~~~~~g~~~~l~~i~p-----~v 88 (117)
T COG1366 41 ASGARGLVIDLSGVDFMD---------------------------SAGLGVLVALLKSARLRGVELVLVGIQP-----EV 88 (117)
T ss_pred cCCCcEEEEECCCCceec---------------------------hHHHHHHHHHHHHHHhcCCeEEEEeCCH-----HH
Confidence 344556999999955432 2233345667789999998888888777 56
Q ss_pred HHHHHhcCCCCc
Q 036571 176 ENNLKNVGFYTW 187 (251)
Q Consensus 176 ~~~L~~~G~~~~ 187 (251)
.+-+...|+...
T Consensus 89 ~~~~~~~gl~~~ 100 (117)
T COG1366 89 ARTLELTGLDKS 100 (117)
T ss_pred HHHHHHhCchhh
Confidence 677788898653
No 304
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=41.55 E-value=44 Score=27.61 Aligned_cols=61 Identities=11% Similarity=0.014 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhhhhcCCCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHC-CC
Q 036571 81 VAYEAIVYAQSLELAGDGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSL-GI 159 (251)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~-G~ 159 (251)
...||..+.+.++..+. ...+++|+.++--.+ . ......+.+|++.++++ |+
T Consensus 66 a~~qA~~f~~~~~~~~~-~~~~~lD~E~~~~~~---------------~-----------~~~~~~~~~f~~~v~~~~G~ 118 (184)
T cd06525 66 PEEQAENFYNTIKGKKM-DLKPALDVEVNFGLS---------------K-----------DELNDYVLRFIEEFEKLSGL 118 (184)
T ss_pred HHHHHHHHHHhccccCC-CCCeEEEEecCCCCC---------------H-----------HHHHHHHHHHHHHHHHHHCC
Confidence 45788888777764322 235789999863111 0 11224678899999998 99
Q ss_pred eEEEEeCCC
Q 036571 160 KIVFLTGRP 168 (251)
Q Consensus 160 ~I~~vTnR~ 168 (251)
+++|-|+..
T Consensus 119 ~~~iY~~~~ 127 (184)
T cd06525 119 KVGIYTYTS 127 (184)
T ss_pred CeEEEecHH
Confidence 999999987
No 305
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=41.25 E-value=71 Score=26.14 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=28.5
Q ss_pred chHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCC
Q 036571 144 LPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGF 184 (251)
Q Consensus 144 ~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~ 184 (251)
.|...++++.+++.|+.+.+.||... ....+.|...|+
T Consensus 76 ~~~l~~li~~~~~~g~~v~i~TNg~~---~~~l~~l~~~g~ 113 (191)
T TIGR02495 76 QAGLPDFLRKVRELGFEVKLDTNGSN---PRVLEELLEEGL 113 (191)
T ss_pred cHhHHHHHHHHHHCCCeEEEEeCCCC---HHHHHHHHhcCC
Confidence 45678999999999999999999872 233455556674
No 306
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=40.77 E-value=87 Score=28.71 Aligned_cols=27 Identities=11% Similarity=0.179 Sum_probs=19.7
Q ss_pred hHHHHHHHHH----HHCCCeEEEEeCCCccc
Q 036571 145 PESLKLYKKL----LSLGIKIVFLTGRPEDQ 171 (251)
Q Consensus 145 pga~ell~~L----~~~G~~I~~vTnR~e~~ 171 (251)
.++.++++.| ++++-.+.||.||-...
T Consensus 187 ~~m~~~i~~Ia~~ar~~~P~~~II~NnG~ei 217 (315)
T TIGR01370 187 AEMIAFVCEIAAYARAQNPQFVIIPQNGEEL 217 (315)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEecCchhh
Confidence 4455555555 99999999999998543
No 307
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=40.77 E-value=65 Score=26.92 Aligned_cols=65 Identities=18% Similarity=0.256 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhhhhcC-CCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHH
Q 036571 78 SEAVAYEAIVYAQSLELAG-DGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLS 156 (251)
Q Consensus 78 ~~~~~~~a~~~~~~~~~~~-~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~ 156 (251)
......||..+++.++..+ .....+++|+...-..+ .+ .....+..|++++++
T Consensus 66 ~~~a~~eA~~f~~~~~~~~l~~~~~~~lDvE~~~~~~---------------~~-----------~~~~~~~~f~~~v~~ 119 (196)
T cd06415 66 VSQAKYEADYFLNSAQQAGLPKGSYLALDYEQGSGNS---------------KA-----------ANTSAILAFMDTIKD 119 (196)
T ss_pred HHHHHHHHHHHHHHhhhcCCCCCCEEEEEEecCCCCC---------------HH-----------HHHHHHHHHHHHHHH
Confidence 4456677777776665421 11235789999742111 01 112346789999999
Q ss_pred CCCeEEEEeCCC
Q 036571 157 LGIKIVFLTGRP 168 (251)
Q Consensus 157 ~G~~I~~vTnR~ 168 (251)
.|+++.|=|++.
T Consensus 120 ~G~~~~iYt~~~ 131 (196)
T cd06415 120 AGYKPMLYSYKP 131 (196)
T ss_pred hCCCcEEEecHH
Confidence 999999999986
No 308
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=40.39 E-value=40 Score=23.40 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=20.1
Q ss_pred chHHHHHHHHHHHCCCeEEEEe
Q 036571 144 LPESLKLYKKLLSLGIKIVFLT 165 (251)
Q Consensus 144 ~pga~ell~~L~~~G~~I~~vT 165 (251)
-+.+.++++.++++|.+++.+|
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 4778999999999999999999
No 309
>PF03345 DDOST_48kD: Oligosaccharyltransferase 48 kDa subunit beta; InterPro: IPR005013 During N-linked glycosylation of proteins, oligosaccharide chains are assembled on the carrier molecule dolichyl pyrophosphate in the following order: 2 molecules of N-acetylglucosamine (GlcNAc), 9 molecules of mannose, and 3 molecules of glucose. These 14-residue oligosaccharide cores are then transferred to asparagine residues on nascent polypeptide chains in the endoplasmic reticulum (ER). As proteins progress through the Golgi apparatus, the oligosaccharide cores are modified by trimming and extension to generate a diverse array of glycosylated proteins [, ]. The oligosaccharyl transferase complex (OST complex) 2.4.1.119 from EC transfers 14-sugar branched oligosaccharides from dolichyl pyrophosphate to asparagine residues []. The complex contains nine protein subunits: Ost1p, Ost2p, Ost3p, Ost4p, Ost5p, Ost6p, Stt3p, Swp1p, and Wbp1p, all of which are integral membrane proteins of the ER. The OST complex interacts with the Sec61p pore complex [] involved in protein import into the ER. This entry represents subunits OST3 and OST6. OST3 is homologous to OST6 [], and several lines of evidence indicate that they are alternative members of the OST complex. Disruption of both OST3 and OST6 causes severe underglycosylation of soluble and membrane-bound glycoproteins and a defect in the assembly of the complex. Hence, the function of these genes seems to be essential for recruiting a fully active complex necessary for efficient N-glycosylation []. This entry also includes the magnesium transporter protein 1, also known as OST3 homologue B, which might be involved in N-glycosylation through its association with the oligosaccharyl transferase (OST) complex. Wbp1p is the beta subunit of the OST complex, one of the original six subunits purified []. Wbp1 is essential [, ], but conditional mutants have decreased transferase activity [, ]. Wbp1p is homologous to mammalian OST48 [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane
Probab=40.19 E-value=1.4e+02 Score=28.51 Aligned_cols=72 Identities=17% Similarity=0.200 Sum_probs=47.3
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCCCC--CCccccchHHHHHHHHhcCccEEEEE
Q 036571 147 SLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSSYS--GETAVVYKSSERKRLEKKGYRIIGNI 224 (251)
Q Consensus 147 a~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~--~kp~~~~K~~~r~~L~~~g~~i~~~V 224 (251)
-..|++.|+++|+++-+.+-.++. -.|.+.|-..|+++|+-+...+ ++ ........+....|-++.+..
T Consensus 14 yS~Ff~~L~~rg~~l~~~~~~d~~------l~L~~~ge~~YD~LIif~~~~k~~g~---~ls~~~ll~Fvd~GgNilv~~ 84 (423)
T PF03345_consen 14 YSTFFNSLKERGYELTFKSADDES------LSLFKYGERLYDHLIIFPPSVKEFGG---SLSPKTLLDFVDNGGNILVAG 84 (423)
T ss_pred HHHHHHHHHhCCCEEEEecCCCCC------cchhhCChhhcceEEEeCCcccccCC---CCCHHHHHHHHhCCCcEEEEe
Confidence 457899999999999999998733 3577889988999887654321 11 122233444455676765544
Q ss_pred cCC
Q 036571 225 GDQ 227 (251)
Q Consensus 225 GDq 227 (251)
+-+
T Consensus 85 s~~ 87 (423)
T PF03345_consen 85 SSD 87 (423)
T ss_pred CCC
Confidence 434
No 310
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=40.18 E-value=2.2e+02 Score=23.67 Aligned_cols=62 Identities=16% Similarity=0.282 Sum_probs=45.3
Q ss_pred CCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCC-eEEEEeCCCcccHHHH
Q 036571 97 DGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGI-KIVFLTGRPEDQRSVT 175 (251)
Q Consensus 97 ~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~-~I~~vTnR~e~~r~~T 175 (251)
.++|.|||-+=|-...+- ...-+||-++-.++|+++|+ .|+.+|-++ .=.+
T Consensus 42 ~GKKvIifGvPgAFtPtC-------------------------s~~HvPGyi~~a~elksKGVd~iicvSVnD---pFv~ 93 (171)
T KOG0541|consen 42 KGKKVILFGVPGAFTPTC-------------------------SSSHVPGYIEKADELKSKGVDEIICVSVND---PFVM 93 (171)
T ss_pred CCceEEEEcCCCccCCcc-------------------------ccccCchHHHHHHHHHhcCCcEEEEEecCc---HHHH
Confidence 468899998887333220 13568999999999999998 566778777 4567
Q ss_pred HHHHHhcCCCC
Q 036571 176 ENNLKNVGFYT 186 (251)
Q Consensus 176 ~~~L~~~G~~~ 186 (251)
..|=+.+|-..
T Consensus 94 ~aW~k~~g~~~ 104 (171)
T KOG0541|consen 94 KAWAKSLGAND 104 (171)
T ss_pred HHHHhhcCccc
Confidence 77877777643
No 311
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=39.75 E-value=82 Score=23.96 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=31.7
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCC
Q 036571 143 SLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFY 185 (251)
Q Consensus 143 ~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~ 185 (251)
.++...++.+.++++|+.++.||..+ .+...+++++.|+.
T Consensus 42 ~~~~l~~~~~~~~~~~~~vv~is~d~---~~~~~~~~~~~~~~ 81 (140)
T cd03017 42 EACDFRDLYEEFKALGAVVIGVSPDS---VESHAKFAEKYGLP 81 (140)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCC---HHHHHHHHHHhCCC
Confidence 36777888888889999999999754 56677888888875
No 312
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=39.46 E-value=56 Score=24.79 Aligned_cols=44 Identities=16% Similarity=0.147 Sum_probs=34.2
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCC---CcccHHHHHHHHHhcCCCC
Q 036571 143 SLPESLKLYKKLLSLGIKIVFLTGR---PEDQRSVTENNLKNVGFYT 186 (251)
Q Consensus 143 ~~pga~ell~~L~~~G~~I~~vTnR---~e~~r~~T~~~L~~~G~~~ 186 (251)
.+|...++.++++++|+.++.++.. .+...+...+.+++.|++.
T Consensus 41 ~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (126)
T cd03012 41 TLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITY 87 (126)
T ss_pred HHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCC
Confidence 4788888899998899999998752 1234777888889999863
No 313
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=39.42 E-value=69 Score=24.21 Aligned_cols=67 Identities=22% Similarity=0.262 Sum_probs=41.6
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHh-cCccEE
Q 036571 143 SLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEK-KGYRII 221 (251)
Q Consensus 143 ~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~-~g~~i~ 221 (251)
-.+.+.++.+.|.+.|++|+ .|. .|.+.|++.|++. ..+.+..+. +.| .....+.+ .....+
T Consensus 10 ~K~~~~~~a~~l~~~G~~i~-AT~-------gTa~~L~~~Gi~~--~~v~~~~~~-g~~------~i~~~i~~~g~idlV 72 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPLF-ATG-------GTSRVLADAGIPV--RAVSKRHED-GEP------TVDAAIAEKGKFDVV 72 (112)
T ss_pred cHHHHHHHHHHHHHCCCEEE-ECc-------HHHHHHHHcCCce--EEEEecCCC-CCc------HHHHHHhCCCCEEEE
Confidence 34778889999999999985 664 3578889999874 334333221 111 23334444 456667
Q ss_pred EEEcC
Q 036571 222 GNIGD 226 (251)
Q Consensus 222 ~~VGD 226 (251)
+++-|
T Consensus 73 In~~~ 77 (112)
T cd00532 73 INLRD 77 (112)
T ss_pred EEcCC
Confidence 77655
No 314
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=38.92 E-value=2.2e+02 Score=23.46 Aligned_cols=69 Identities=17% Similarity=0.235 Sum_probs=51.5
Q ss_pred CCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCC-eEEEEeCCCcccHHHH
Q 036571 97 DGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGI-KIVFLTGRPEDQRSVT 175 (251)
Q Consensus 97 ~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~-~I~~vTnR~e~~r~~T 175 (251)
.+++.|+|-+=|-...+- ...-+||-.++...++++|+ .|+++|=++ .-..
T Consensus 36 ~gKkVvlf~lPGAFTPTC-------------------------S~~hlPgY~~~~d~f~~kGVD~I~cVSVND---~FVm 87 (165)
T COG0678 36 KGKKVVLFSLPGAFTPTC-------------------------SSSHLPGYLELADEFKAKGVDEIYCVSVND---AFVM 87 (165)
T ss_pred CCCEEEEEeCCCccCCCc-------------------------ccccCccHHHHHHHHHHcCCceEEEEEeCc---HHHH
Confidence 678899999888544431 24578999999999999998 677888887 5577
Q ss_pred HHHHHhcCCCCcceEEEeCC
Q 036571 176 ENNLKNVGFYTWENLILKGS 195 (251)
Q Consensus 176 ~~~L~~~G~~~~~~lilr~~ 195 (251)
-.|=+..|... ++.+-++
T Consensus 88 ~AWak~~g~~~--~I~fi~D 105 (165)
T COG0678 88 NAWAKSQGGEG--NIKFIPD 105 (165)
T ss_pred HHHHHhcCCCc--cEEEecC
Confidence 78888888864 4444433
No 315
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.89 E-value=27 Score=32.16 Aligned_cols=48 Identities=25% Similarity=0.353 Sum_probs=36.8
Q ss_pred HHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCC
Q 036571 135 WVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYT 186 (251)
Q Consensus 135 wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~ 186 (251)
|++-++.+-.+=...++.+|+++|+.|. +|.|. +....+-|+.+||+.
T Consensus 4 wiDI~n~~hvhfFk~lI~elekkG~ev~-iT~rd---~~~v~~LLd~ygf~~ 51 (346)
T COG1817 4 WIDIGNPPHVHFFKNLIWELEKKGHEVL-ITCRD---FGVVTELLDLYGFPY 51 (346)
T ss_pred EEEcCCcchhhHHHHHHHHHHhCCeEEE-EEEee---cCcHHHHHHHhCCCe
Confidence 4445556667778889999999999765 56666 567788899999975
No 316
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=38.31 E-value=1.4e+02 Score=21.95 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHCCCeEEEEeCCCc
Q 036571 146 ESLKLYKKLLSLGIKIVFLTGRPE 169 (251)
Q Consensus 146 ga~ell~~L~~~G~~I~~vTnR~e 169 (251)
-..++++.|++.+.++.++...++
T Consensus 9 ~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 9 IGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHH
T ss_pred HHHHHHHHHHhCCCEEEEEECCcH
Confidence 356677778887777888887763
No 317
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=37.76 E-value=37 Score=26.67 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.3
Q ss_pred chHHHHHHHHHHHCCCeEEEEeC
Q 036571 144 LPESLKLYKKLLSLGIKIVFLTG 166 (251)
Q Consensus 144 ~pga~ell~~L~~~G~~I~~vTn 166 (251)
-|.+++.+++.+++|.+++-+||
T Consensus 116 s~~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 116 SPNVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp SHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CHHHHHHHHHHHHCCCEEEEEeC
Confidence 48899999999999999999986
No 318
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=37.71 E-value=21 Score=30.80 Aligned_cols=14 Identities=29% Similarity=0.245 Sum_probs=12.7
Q ss_pred cEEEEecCCCccCC
Q 036571 100 EIWIFDIDETSLSN 113 (251)
Q Consensus 100 ~avvfDIDgTlldn 113 (251)
++|+|||.||+.+-
T Consensus 2 ~~~l~diegt~~~i 15 (220)
T TIGR01691 2 KNVLLDIEGTTGSI 15 (220)
T ss_pred CEEEEecCCCcccH
Confidence 68999999999985
No 319
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=37.68 E-value=1.2e+02 Score=27.86 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=20.9
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeC
Q 036571 142 PSLPESLKLYKKLLSLGIKIVFLTG 166 (251)
Q Consensus 142 ~~~pga~ell~~L~~~G~~I~~vTn 166 (251)
.-+|...+++++|+++|+++.+...
T Consensus 82 ~~FPdp~~mi~~Lh~~G~kv~l~v~ 106 (340)
T cd06597 82 GRWPNPKGMIDELHEQGVKVLLWQI 106 (340)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEec
Confidence 3578999999999999999976444
No 320
>cd06523 GH25_PlyB-like PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis. PlyB has an N-terminal glycosyl hydrolase family 25 (GH25) catalytic domain and a C-terminal bacterial SH3-like domain, SH3b. Both domains are required for effective catalytic activity. Endolysins are produced by bacteriophages at the end of their life cycle and participate in lysing the bacterial cell in order to release the newly formed progeny. Endolysins (also referred to as endo-N-acetylmuramidases or peptidoglycan hydrolases) degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=37.41 E-value=1.1e+02 Score=25.25 Aligned_cols=59 Identities=19% Similarity=0.243 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHC
Q 036571 78 SEAVAYEAIVYAQSLELAGDGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSL 157 (251)
Q Consensus 78 ~~~~~~~a~~~~~~~~~~~~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~ 157 (251)
......||..+.+.++. +...+++|++.+... .....+..|+++++++
T Consensus 66 ~~~a~~eA~~f~~~~~~---~~~~~~lD~E~~~~~-----------------------------~~~~~~~~f~~~v~~~ 113 (177)
T cd06523 66 TADAKAEARDFYNRANK---KPTFYVLDVEVTSMS-----------------------------DMNAGVQAFISELRRL 113 (177)
T ss_pred HHHHHHHHHHHHHHhcC---CCceEEEeeccCCcc-----------------------------hHHHHHHHHHHHHHHc
Confidence 44566778777666543 345688999974221 1234578899999999
Q ss_pred CC-eEEEEeCCC
Q 036571 158 GI-KIVFLTGRP 168 (251)
Q Consensus 158 G~-~I~~vTnR~ 168 (251)
|. +++|=|++.
T Consensus 114 g~~~~~lYt~~~ 125 (177)
T cd06523 114 GAKKVGLYIGHH 125 (177)
T ss_pred cCCcEEEEchHH
Confidence 86 577878765
No 321
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=37.35 E-value=75 Score=29.29 Aligned_cols=42 Identities=17% Similarity=0.116 Sum_probs=32.4
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCC
Q 036571 143 SLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFY 185 (251)
Q Consensus 143 ~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~ 185 (251)
..|...+++++++++|+.+.+.||..-- -+...+.|.+.|+.
T Consensus 75 l~~~~~~il~~~~~~g~~~~i~TNG~ll-~~~~~~~L~~~g~~ 116 (378)
T PRK05301 75 LRKDLEELVAHARELGLYTNLITSGVGL-TEARLAALKDAGLD 116 (378)
T ss_pred CchhHHHHHHHHHHcCCcEEEECCCccC-CHHHHHHHHHcCCC
Confidence 3467789999999999999999997632 33456788888875
No 322
>PRK13938 phosphoheptose isomerase; Provisional
Probab=37.33 E-value=50 Score=27.98 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=25.3
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCCcc
Q 036571 142 PSLPESLKLYKKLLSLGIKIVFLTGRPED 170 (251)
Q Consensus 142 ~~~pga~ell~~L~~~G~~I~~vTnR~e~ 170 (251)
---+.+++.++.++++|.+++.+|+.+..
T Consensus 124 G~t~~vi~a~~~Ak~~G~~vI~iT~~~~s 152 (196)
T PRK13938 124 GNSMSVLRAAKTARELGVTVVAMTGESGG 152 (196)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 34688999999999999999999998743
No 323
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=37.07 E-value=1.9e+02 Score=22.08 Aligned_cols=74 Identities=11% Similarity=0.086 Sum_probs=43.1
Q ss_pred HHHHHHHHHCCCeEEEEeCCCcccH---HHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCccEEEEE
Q 036571 148 LKLYKKLLSLGIKIVFLTGRPEDQR---SVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRIIGNI 224 (251)
Q Consensus 148 ~ell~~L~~~G~~I~~vTnR~e~~r---~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i~~~V 224 (251)
.++++.+.+.+..++.+|....... ....+.|++.|.+. -.+++.+... + .....+.+.|+.-++..
T Consensus 40 e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~-i~i~~GG~~~--------~-~~~~~~~~~G~d~~~~~ 109 (122)
T cd02071 40 EEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGD-ILVVGGGIIP--------P-EDYELLKEMGVAEIFGP 109 (122)
T ss_pred HHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCC-CEEEEECCCC--------H-HHHHHHHHCCCCEEECC
Confidence 3666677777888888888765443 33455566667653 3455554321 1 22344556777766666
Q ss_pred cCCcccc
Q 036571 225 GDQWSDL 231 (251)
Q Consensus 225 GDq~sDi 231 (251)
|..+.|+
T Consensus 110 ~~~~~~~ 116 (122)
T cd02071 110 GTSIEEI 116 (122)
T ss_pred CCCHHHH
Confidence 6555444
No 324
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=37.04 E-value=1.2e+02 Score=21.36 Aligned_cols=14 Identities=14% Similarity=-0.012 Sum_probs=9.9
Q ss_pred hcCccEEEEEcCCc
Q 036571 215 KKGYRIIGNIGDQW 228 (251)
Q Consensus 215 ~~g~~i~~~VGDq~ 228 (251)
+.|+..++.||++.
T Consensus 52 ~~g~~~~iiiG~~e 65 (94)
T cd00861 52 LIGIPYRIVVGKKS 65 (94)
T ss_pred hcCCCEEEEECCch
Confidence 46777777788664
No 325
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=36.84 E-value=39 Score=31.21 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=31.7
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCC
Q 036571 141 APSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYT 186 (251)
Q Consensus 141 ~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~ 186 (251)
.+-..=-..++++|.++|+.|.+. .|. ...+.+-|+..|++.
T Consensus 10 p~hvhfFk~~I~eL~~~GheV~it-~R~---~~~~~~LL~~yg~~y 51 (335)
T PF04007_consen 10 PAHVHFFKNIIRELEKRGHEVLIT-ARD---KDETEELLDLYGIDY 51 (335)
T ss_pred chHHHHHHHHHHHHHhCCCEEEEE-Eec---cchHHHHHHHcCCCe
Confidence 334444567889999999998755 455 568899999999964
No 326
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=36.72 E-value=34 Score=21.95 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=24.5
Q ss_pred HHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhc
Q 036571 148 LKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNV 182 (251)
Q Consensus 148 ~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~ 182 (251)
.++..+|++.|++..=||..+ |...++.|.++
T Consensus 9 ~eL~~~L~~~G~~~gPIt~sT---R~vy~kkL~~~ 40 (44)
T smart00540 9 AELRAELKQYGLPPGPITDTT---RKLYEKKLRKL 40 (44)
T ss_pred HHHHHHHHHcCCCCCCcCcch---HHHHHHHHHHH
Confidence 467778888888888888776 77777777653
No 327
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=36.59 E-value=45 Score=28.24 Aligned_cols=35 Identities=31% Similarity=0.457 Sum_probs=29.1
Q ss_pred chHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCC
Q 036571 144 LPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYT 186 (251)
Q Consensus 144 ~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~ 186 (251)
.+++.++.+.|.+.|++|+ .|+. |.+.|+..|++.
T Consensus 10 K~~l~~lAk~L~~lGf~I~-AT~G-------TAk~L~e~GI~v 44 (187)
T cd01421 10 KTGLVEFAKELVELGVEIL-STGG-------TAKFLKEAGIPV 44 (187)
T ss_pred cccHHHHHHHHHHCCCEEE-EccH-------HHHHHHHcCCeE
Confidence 6789999999999999995 5553 578999999864
No 328
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=36.47 E-value=2.7e+02 Score=26.92 Aligned_cols=76 Identities=14% Similarity=0.094 Sum_probs=51.8
Q ss_pred CCCCchHHHHHHHHHHHCCC-eEEEEeCCCcc-cHHHHHHHHHhcCCCCcceEEEeCCCCCCCcccc----chHHHHHHH
Q 036571 140 EAPSLPESLKLYKKLLSLGI-KIVFLTGRPED-QRSVTENNLKNVGFYTWENLILKGSSYSGETAVV----YKSSERKRL 213 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~-~I~~vTnR~e~-~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~----~K~~~r~~L 213 (251)
+.+.-....++++..++.|+ .|-+.||+-.- ......+.|+.+|. ..++|+-++...++... .|. .....
T Consensus 120 EPTvr~DL~eiv~~a~e~g~~hVqinTnGirlA~~~~~~~~l~~ag~---~tvYlsFDG~~e~~~~~~~~eIk~-alen~ 195 (475)
T COG1964 120 EPTLRDDLIEIIKIAREEGYDHVQLNTNGIRLAFDPEYVKKLREAGV---NTVYLSFDGVTPKTNWKNHWEIKQ-ALENC 195 (475)
T ss_pred CccchhhHHHHHHHHhhcCccEEEEccCceeeccCHHHHHHHHhcCC---cEEEEecCCCCCCchhhHhhhhHH-HHHHH
Confidence 34556778999999999999 78899998643 23567889999995 46788777654444332 233 33344
Q ss_pred HhcCcc
Q 036571 214 EKKGYR 219 (251)
Q Consensus 214 ~~~g~~ 219 (251)
.+.|..
T Consensus 196 r~~g~~ 201 (475)
T COG1964 196 RKAGLP 201 (475)
T ss_pred HhcCCC
Confidence 456755
No 329
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=36.28 E-value=2.5e+02 Score=25.77 Aligned_cols=77 Identities=16% Similarity=0.192 Sum_probs=44.7
Q ss_pred HHHHHCCCeEEEEeCCCc-c---cHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCccEEEEEcCC
Q 036571 152 KKLLSLGIKIVFLTGRPE-D---QRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRIIGNIGDQ 227 (251)
Q Consensus 152 ~~L~~~G~~I~~vTnR~e-~---~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i~~~VGDq 227 (251)
+.+++.|-++++||++.. . ..+...+.|++.|+.. . ++. +..+.|...--......+++.+.+.++.||-.
T Consensus 19 ~~~~~~g~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~--~-~~~--~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 93 (357)
T cd08181 19 EELAALGKRALIVTGKSSAKKNGSLDDVTKALEELGIEY--E-IFD--EVEENPSLETIMEAVEIAKKFNADFVIGIGGG 93 (357)
T ss_pred HHHHHcCCEEEEEeCCchHhhcCcHHHHHHHHHHcCCeE--E-EeC--CCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 456667889999999763 2 2366788888888842 2 221 11122211212233344556678878888765
Q ss_pred c-ccccc
Q 036571 228 W-SDLLG 233 (251)
Q Consensus 228 ~-sDi~g 233 (251)
. -|+-.
T Consensus 94 SviD~aK 100 (357)
T cd08181 94 SPLDAAK 100 (357)
T ss_pred hHHHHHH
Confidence 4 66654
No 330
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.21 E-value=66 Score=28.83 Aligned_cols=53 Identities=9% Similarity=0.192 Sum_probs=41.3
Q ss_pred CChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhc
Q 036571 127 FNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNV 182 (251)
Q Consensus 127 ~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~ 182 (251)
|.....++.+.........|..+++..|+++++++++.|..- -+.++..+++.
T Consensus 123 f~k~~I~~~Va~s~i~lReg~~~ff~~L~~~~IP~~iFSAGi---gdiiEev~~q~ 175 (298)
T KOG3128|consen 123 FSKNAIDDIVAESNIALREGYEEFFEALQAHEIPLLIFSAGI---GDIIEEVTRQK 175 (298)
T ss_pred cCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCceEEEecch---HHHHHHHHHHH
Confidence 444556666666667778899999999999999999999986 55666666654
No 331
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=36.18 E-value=3.1e+02 Score=25.31 Aligned_cols=90 Identities=21% Similarity=0.171 Sum_probs=51.9
Q ss_pred HHHHCC-CeEEEEeCCCcc--cHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCcc---EEEEEcC
Q 036571 153 KLLSLG-IKIVFLTGRPED--QRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYR---IIGNIGD 226 (251)
Q Consensus 153 ~L~~~G-~~I~~vTnR~e~--~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~---i~~~VGD 226 (251)
.+++.| -+++++|++.-. ..+...+.|+..|+.. ...++. .....|+. .--......+.+.|.+ .++.||.
T Consensus 17 ~l~~~g~~rvlvVtd~~v~~~~~~~l~~~L~~~g~~~-~~~~~~-~~e~~k~~-~~v~~~~~~~~~~~~dr~~~IIAvGG 93 (355)
T cd08197 17 YLPELNADKYLLVTDSNVEDLYGHRLLEYLREAGAPV-ELLSVP-SGEEHKTL-STLSDLVERALALGATRRSVIVALGG 93 (355)
T ss_pred HHHhcCCCeEEEEECccHHHHHHHHHHHHHHhcCCce-EEEEeC-CCCCCCCH-HHHHHHHHHHHHcCCCCCcEEEEECC
Confidence 445555 578899987532 2456678888888863 222332 22222221 1122334455556776 7777888
Q ss_pred Cc-ccccccc-----ccCcEEEeCC
Q 036571 227 QW-SDLLGTN-----AGNRTFKLPD 245 (251)
Q Consensus 227 q~-sDi~ga~-----~g~r~f~lPn 245 (251)
.. .|+.+.- .|.+.+.+|-
T Consensus 94 Gsv~D~ak~~A~~~~rgip~I~IPT 118 (355)
T cd08197 94 GVVGNIAGLLAALLFRGIRLVHIPT 118 (355)
T ss_pred cHHHHHHHHHHHHhccCCCEEEecC
Confidence 55 8888762 3667777774
No 332
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=35.79 E-value=72 Score=25.13 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=16.4
Q ss_pred HHHHHHHHCCCeEEEEeCCC
Q 036571 149 KLYKKLLSLGIKIVFLTGRP 168 (251)
Q Consensus 149 ell~~L~~~G~~I~~vTnR~ 168 (251)
..++-|.+.|+.||.+|.=+
T Consensus 82 sV~~pLsd~gigIFavStyd 101 (128)
T COG3603 82 SVSQPLSDNGIGIFAVSTYD 101 (128)
T ss_pred hhhhhHhhCCccEEEEEecc
Confidence 45677899999999999754
No 333
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=35.68 E-value=47 Score=31.24 Aligned_cols=67 Identities=19% Similarity=0.253 Sum_probs=38.9
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCccc---------------------HHHHHHHHHhcCCCCcceEEEeCCCCCCCccccc
Q 036571 147 SLKLYKKLLSLGIKIVFLTGRPEDQ---------------------RSVTENNLKNVGFYTWENLILKGSSYSGETAVVY 205 (251)
Q Consensus 147 a~ell~~L~~~G~~I~~vTnR~e~~---------------------r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~ 205 (251)
+--+-++++.+|.+++++||.++.. .+...+.++++|+.. +.++|..++..+ ..
T Consensus 25 ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~I~~--D~F~rTt~~~h~---~~ 99 (391)
T PF09334_consen 25 ADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALNISY--DRFIRTTDDRHK---EF 99 (391)
T ss_dssp HHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT-----SEEEETTSHHHH---HH
T ss_pred HHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCC--cceeCCCCHHHH---HH
Confidence 3445678889999999999998642 233456677777764 457776542211 12
Q ss_pred hHHHHHHHHhcCc
Q 036571 206 KSSERKRLEKKGY 218 (251)
Q Consensus 206 K~~~r~~L~~~g~ 218 (251)
-....++|.+.|+
T Consensus 100 v~~i~~~L~~~G~ 112 (391)
T PF09334_consen 100 VQEIFKRLYDNGY 112 (391)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHhcCc
Confidence 2355666777675
No 334
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=35.53 E-value=2.2e+02 Score=22.47 Aligned_cols=81 Identities=9% Similarity=0.066 Sum_probs=46.1
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCccc---HHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCccEEEE
Q 036571 147 SLKLYKKLLSLGIKIVFLTGRPEDQ---RSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRIIGN 223 (251)
Q Consensus 147 a~ell~~L~~~G~~I~~vTnR~e~~---r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i~~~ 223 (251)
..++++...+.+..++.+|...... -..+.+.|++.|++. -.+++.+....++ .-....+..+++.|+..+.-
T Consensus 43 ~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~-~~i~vGG~~~~~~---~~~~~~~~~l~~~G~~~vf~ 118 (137)
T PRK02261 43 QEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLGD-ILLYVGGNLVVGK---HDFEEVEKKFKEMGFDRVFP 118 (137)
T ss_pred HHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCCC-CeEEEECCCCCCc---cChHHHHHHHHHcCCCEEEC
Confidence 3455666777778888888765433 345567777777765 4566666432111 11223445666778765443
Q ss_pred EcCCcccc
Q 036571 224 IGDQWSDL 231 (251)
Q Consensus 224 VGDq~sDi 231 (251)
-|..+.++
T Consensus 119 ~~~~~~~i 126 (137)
T PRK02261 119 PGTDPEEA 126 (137)
T ss_pred cCCCHHHH
Confidence 34444443
No 335
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=35.39 E-value=2.5e+02 Score=22.92 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=30.3
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhc
Q 036571 142 PSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNV 182 (251)
Q Consensus 142 ~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~ 182 (251)
+...=+.++++.+.+.|.+|+++-++++. .+...++|++.
T Consensus 32 ~g~dl~~~l~~~~~~~~~~ifllG~~~~~-~~~~~~~l~~~ 71 (172)
T PF03808_consen 32 TGSDLFPDLLRRAEQRGKRIFLLGGSEEV-LEKAAANLRRR 71 (172)
T ss_pred CHHHHHHHHHHHHHHcCCeEEEEeCCHHH-HHHHHHHHHHH
Confidence 34455678888888999999999998755 45667777764
No 336
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=35.03 E-value=34 Score=31.70 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=14.5
Q ss_pred CCCcEEEEecCCCccC
Q 036571 97 DGREIWIFDIDETSLS 112 (251)
Q Consensus 97 ~~~~avvfDIDgTlld 112 (251)
++.++|.||+|-||+.
T Consensus 10 ~~i~~~GFDmDyTLa~ 25 (343)
T TIGR02244 10 EKIQVFGFDMDYTLAQ 25 (343)
T ss_pred ccCCEEEECccccccc
Confidence 5689999999999996
No 337
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=35.00 E-value=1.3e+02 Score=25.80 Aligned_cols=28 Identities=18% Similarity=0.128 Sum_probs=19.9
Q ss_pred ccEEEEEcCCccccccccccCcEEEeCC
Q 036571 218 YRIIGNIGDQWSDLLGTNAGNRTFKLPD 245 (251)
Q Consensus 218 ~~i~~~VGDq~sDi~ga~~g~r~f~lPn 245 (251)
...++.|||+.+|+.--......|..-|
T Consensus 194 ~~~~~a~GD~~ND~~Ml~~ag~~vam~N 221 (256)
T TIGR01486 194 AIKVVGLGDSPNDLPLLEVVDLAVVVPG 221 (256)
T ss_pred CceEEEEcCCHhhHHHHHHCCEEEEeCC
Confidence 5568999999999987644445555444
No 338
>PRK12342 hypothetical protein; Provisional
Probab=34.91 E-value=3.2e+02 Score=24.14 Aligned_cols=85 Identities=14% Similarity=0.145 Sum_probs=44.7
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCcccHHH-HHHHHHhcCCCCcceEEEeCCCCCCCccccc-hHHHHHHHHhcCccEEEEE
Q 036571 147 SLKLYKKLLSLGIKIVFLTGRPEDQRSV-TENNLKNVGFYTWENLILKGSSYSGETAVVY-KSSERKRLEKKGYRIIGNI 224 (251)
Q Consensus 147 a~ell~~L~~~G~~I~~vTnR~e~~r~~-T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~-K~~~r~~L~~~g~~i~~~V 224 (251)
++|.--+|++.|.+|..+|=.+...... +.+.--.+|.+. -+++..+...+. ++.- -..+-..+++.||.+ +..
T Consensus 40 AlE~AlrLk~~g~~Vtvls~Gp~~a~~~~l~r~alamGaD~--avli~d~~~~g~-D~~ata~~La~~i~~~~~DL-Vl~ 115 (254)
T PRK12342 40 AIEAASQLATDGDEIAALTVGGSLLQNSKVRKDVLSRGPHS--LYLVQDAQLEHA-LPLDTAKALAAAIEKIGFDL-LLF 115 (254)
T ss_pred HHHHHHHHhhcCCEEEEEEeCCChHhHHHHHHHHHHcCCCE--EEEEecCccCCC-CHHHHHHHHHHHHHHhCCCE-EEE
Confidence 4444445556788999999887542222 334344557642 333332222221 1111 123334455557776 448
Q ss_pred cCCcccccccc
Q 036571 225 GDQWSDLLGTN 235 (251)
Q Consensus 225 GDq~sDi~ga~ 235 (251)
|.+-.|-..+.
T Consensus 116 G~~s~D~~tgq 126 (254)
T PRK12342 116 GEGSGDLYAQQ 126 (254)
T ss_pred cCCcccCCCCC
Confidence 99888887663
No 339
>cd06524 GH25_YegX-like YegX is an uncharacterized bacterial protein with a glycosyl hydrolase family 25 (GH25) catalytic domain that is similar in sequence to the CH-type (Chalaropsis-type) lysozymes of the GH25 family of endolysins.
Probab=34.74 E-value=76 Score=26.36 Aligned_cols=62 Identities=15% Similarity=0.171 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhhhcCCCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHC-CCe
Q 036571 82 AYEAIVYAQSLELAGDGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSL-GIK 160 (251)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~-G~~ 160 (251)
..||..+.+.++....+...+++|+++.-..+.+ ......+..|+++++++ |++
T Consensus 71 ~~qA~~f~~~~~~~~~~~~~~~lDvE~~~~~~~~-------------------------~~~~~~~~~f~~~v~~~~g~~ 125 (194)
T cd06524 71 KQQADNFLNTVKLLGPGDLPPVLDVEWDGRKSSA-------------------------KQIQEGVLEWLDAVEKATGVK 125 (194)
T ss_pred HHHHHHHHHHcCCCCCCCCCeEEEEecCCCCCCH-------------------------HHHHHHHHHHHHHHHHHHCCC
Confidence 4677777776654222223457999884322100 11235678899999875 899
Q ss_pred EEEEeCCC
Q 036571 161 IVFLTGRP 168 (251)
Q Consensus 161 I~~vTnR~ 168 (251)
+.+=|+..
T Consensus 126 ~~iY~~~~ 133 (194)
T cd06524 126 PIIYTNPS 133 (194)
T ss_pred eEEEEcHH
Confidence 99999886
No 340
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=34.35 E-value=1.3e+02 Score=20.09 Aligned_cols=39 Identities=21% Similarity=0.175 Sum_probs=27.0
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCccc-HHHHHHHHHhcCCC
Q 036571 147 SLKLYKKLLSLGIKIVFLTGRPEDQ-RSVTENNLKNVGFY 185 (251)
Q Consensus 147 a~ell~~L~~~G~~I~~vTnR~e~~-r~~T~~~L~~~G~~ 185 (251)
..++++.++++|++.+.+|....-. .....+..++.|+.
T Consensus 17 ~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~ 56 (67)
T smart00481 17 PEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIK 56 (67)
T ss_pred HHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCe
Confidence 5688999999999999999987321 23334444555654
No 341
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=34.06 E-value=1.2e+02 Score=31.75 Aligned_cols=30 Identities=30% Similarity=0.435 Sum_probs=27.6
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCc
Q 036571 140 EAPSLPESLKLYKKLLSLGIKIVFLTGRPE 169 (251)
Q Consensus 140 ~~~~~pga~ell~~L~~~G~~I~~vTnR~e 169 (251)
.+|..|.+++.+++|++.+++++.+||-..
T Consensus 673 ~CPlK~Ds~~~I~el~~SSH~vvMITGDnp 702 (1160)
T KOG0209|consen 673 SCPLKPDSKKTIKELNNSSHRVVMITGDNP 702 (1160)
T ss_pred eCCCCccHHHHHHHHhccCceEEEEeCCCc
Confidence 478999999999999999999999999763
No 342
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=33.87 E-value=95 Score=24.58 Aligned_cols=45 Identities=20% Similarity=0.307 Sum_probs=32.3
Q ss_pred CCCchHHHHHHHHHHHCCC-eE-EEEeCC---CcccHHHHHHHHHhcCCC
Q 036571 141 APSLPESLKLYKKLLSLGI-KI-VFLTGR---PEDQRSVTENNLKNVGFY 185 (251)
Q Consensus 141 ~~~~pga~ell~~L~~~G~-~I-~~vTnR---~e~~r~~T~~~L~~~G~~ 185 (251)
..-.+.+.++++.|+++|. .+ +++-|. ++..++..++.|+++|+.
T Consensus 61 t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~ 110 (128)
T cd02072 61 GHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFD 110 (128)
T ss_pred cCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcCCC
Confidence 3556788889999999986 44 555665 333455677889999984
No 343
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.79 E-value=68 Score=22.93 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHCCCeEEEEeCCC
Q 036571 145 PESLKLYKKLLSLGIKIVFLTGRP 168 (251)
Q Consensus 145 pga~ell~~L~~~G~~I~~vTnR~ 168 (251)
....++++.|+++|+++..+|...
T Consensus 53 ~~~~~i~~~L~~~G~~~~~~~~~~ 76 (85)
T cd04906 53 EELAELLEDLKSAGYEVVDLSDDE 76 (85)
T ss_pred HHHHHHHHHHHHCCCCeEECCCCH
Confidence 346677778888888877777664
No 344
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=33.64 E-value=61 Score=27.16 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=24.1
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCc
Q 036571 143 SLPESLKLYKKLLSLGIKIVFLTGRPE 169 (251)
Q Consensus 143 ~~pga~ell~~L~~~G~~I~~vTnR~e 169 (251)
--+.+.+.++.++++|.+++.+|+...
T Consensus 123 ~t~~~i~~~~~ak~~g~~iI~iT~~~~ 149 (192)
T PRK00414 123 NSGNIIKAIEAARAKGMKVITLTGKDG 149 (192)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 458899999999999999999999874
No 345
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=33.62 E-value=62 Score=27.40 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=24.3
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCc
Q 036571 143 SLPESLKLYKKLLSLGIKIVFLTGRPE 169 (251)
Q Consensus 143 ~~pga~ell~~L~~~G~~I~~vTnR~e 169 (251)
--+.+.+.++.++++|.+++.+|+.+.
T Consensus 121 ~s~~v~~a~~~Ak~~G~~vI~IT~~~~ 147 (196)
T PRK10886 121 NSRDIVKAVEAAVTRDMTIVALTGYDG 147 (196)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 468899999999999999999999874
No 346
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=33.47 E-value=47 Score=26.97 Aligned_cols=52 Identities=8% Similarity=-0.013 Sum_probs=31.0
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCC
Q 036571 141 APSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGS 195 (251)
Q Consensus 141 ~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~ 195 (251)
..+--|+.-.++..++.|.++.++--..........+||..+++.. |-+.+.
T Consensus 73 g~l~GGt~lT~~~a~~~~KP~l~i~~~~~~~~~~v~~wl~~~~i~v---LNVAGP 124 (145)
T PF12694_consen 73 GELTGGTALTVEFARKHGKPCLHIDLSIPEAAAAVAEWLREHNIRV---LNVAGP 124 (145)
T ss_dssp SS--HHHHHHHHHHHHTT--EEEETS-HHHHHHHHHHHHHHTT--E---EEEE--
T ss_pred CCCCcHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHHHHCCceE---EEeccC
Confidence 3466688888999999999998883332233567789999988843 445443
No 347
>PRK13936 phosphoheptose isomerase; Provisional
Probab=33.42 E-value=62 Score=27.16 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=23.9
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCc
Q 036571 143 SLPESLKLYKKLLSLGIKIVFLTGRPE 169 (251)
Q Consensus 143 ~~pga~ell~~L~~~G~~I~~vTnR~e 169 (251)
--+.++++++.++++|.+++.+|+.+.
T Consensus 123 ~t~~~~~~~~~ak~~g~~iI~IT~~~~ 149 (197)
T PRK13936 123 NSANVIQAIQAAHEREMHVVALTGRDG 149 (197)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 457899999999999999999999764
No 348
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=33.27 E-value=3.4e+02 Score=24.51 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHCC-CeEEEEeCCCcccHHHHHHHHHhcCCC
Q 036571 145 PESLKLYKKLLSLG-IKIVFLTGRPEDQRSVTENNLKNVGFY 185 (251)
Q Consensus 145 pga~ell~~L~~~G-~~I~~vTnR~e~~r~~T~~~L~~~G~~ 185 (251)
.-..++++.+++.+ ++-+.+..|++.......+.|+++|+.
T Consensus 88 ~~~~~i~~~l~~~~~~~~i~~esrpd~i~~e~L~~l~~aG~~ 129 (313)
T TIGR01210 88 ETRNYIFEKIAQRDNLKEVVVESRPEFIDEEKLEELRKIGVN 129 (313)
T ss_pred HHHHHHHHHHHhcCCcceEEEEeCCCcCCHHHHHHHHHcCCC
Confidence 34467777777776 545666778887777778889998874
No 349
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=33.16 E-value=41 Score=28.07 Aligned_cols=37 Identities=19% Similarity=0.028 Sum_probs=23.5
Q ss_pred HHHHHHhcCc--cEEEEEcCCccccccccccCcEEEeCC
Q 036571 209 ERKRLEKKGY--RIIGNIGDQWSDLLGTNAGNRTFKLPD 245 (251)
Q Consensus 209 ~r~~L~~~g~--~i~~~VGDq~sDi~ga~~g~r~f~lPn 245 (251)
++.-++..|. ..+++|||+.+|+.-.......|..-|
T Consensus 154 i~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~vam~N 192 (225)
T TIGR01482 154 VKKLKEKLGIKPGETLVCGDSENDIDLFEVPGFGVAVAN 192 (225)
T ss_pred HHHHHHHhCCCHHHEEEECCCHhhHHHHHhcCceEEcCC
Confidence 3333334444 358999999999988754445555544
No 350
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=33.13 E-value=1.6e+02 Score=20.27 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHCCCeEEEEeCCCccc-------HHHHHHHHHhcCCCC
Q 036571 146 ESLKLYKKLLSLGIKIVFLTGRPEDQ-------RSVTENNLKNVGFYT 186 (251)
Q Consensus 146 ga~ell~~L~~~G~~I~~vTnR~e~~-------r~~T~~~L~~~G~~~ 186 (251)
-..|+...|.+.|.++.++..++.-. +....+.|++.|+..
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v 57 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEV 57 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEE
Confidence 35677777888888888888876432 444555666665543
No 351
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=32.99 E-value=1.9e+02 Score=25.01 Aligned_cols=67 Identities=12% Similarity=0.130 Sum_probs=44.5
Q ss_pred CcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCCCc-----ccHH
Q 036571 99 REIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGRPE-----DQRS 173 (251)
Q Consensus 99 ~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR~e-----~~r~ 173 (251)
.+.++..+..++.++...+.. -+.+-.-.+.++.|+..|+.++-+.|+.. .--.
T Consensus 37 aD~~~~NlE~~v~~~~~~~~~---------------------~~~f~~~~~~~~~L~~~G~d~vslANNH~~D~G~~gl~ 95 (250)
T PF09587_consen 37 ADLVVANLETPVTDSGQPASG---------------------YPHFNAPPEILDALKDAGFDVVSLANNHIFDYGEEGLL 95 (250)
T ss_pred CCEEEEEeeecCcCCCCcCCC---------------------cceecCCHHHHHHHHHcCCCEEEecCCCCccccHHHHH
Confidence 368899999999775331110 12233334557788889999888887753 2245
Q ss_pred HHHHHHHhcCCCC
Q 036571 174 VTENNLKNVGFYT 186 (251)
Q Consensus 174 ~T~~~L~~~G~~~ 186 (251)
.|.+.|++.|+..
T Consensus 96 ~Tl~~L~~~gi~~ 108 (250)
T PF09587_consen 96 DTLEALDKAGIPY 108 (250)
T ss_pred HHHHHHHHCCCcE
Confidence 6888999988864
No 352
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=32.93 E-value=1.2e+02 Score=27.54 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=21.2
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCC
Q 036571 142 PSLPESLKLYKKLLSLGIKIVFLTGR 167 (251)
Q Consensus 142 ~~~pga~ell~~L~~~G~~I~~vTnR 167 (251)
..+|...+++++|+++|++++++..-
T Consensus 68 ~~FPdp~~mi~~Lh~~G~~~~~~i~P 93 (317)
T cd06594 68 ERYPGLDELIEELKARGIRVLTYINP 93 (317)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEecC
Confidence 45788889999999999999876653
No 353
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=32.87 E-value=69 Score=29.20 Aligned_cols=28 Identities=25% Similarity=0.208 Sum_probs=22.0
Q ss_pred EEEEEcCCccccccccccCcEEEeCCCC
Q 036571 220 IIGNIGDQWSDLLGTNAGNRTFKLPDPM 247 (251)
Q Consensus 220 i~~~VGDq~sDi~ga~~g~r~f~lPnp~ 247 (251)
.++.+||+.||+.=-.+...-+.+|+|.
T Consensus 228 ~tiaLGDspND~~mLe~~D~~vvi~~~~ 255 (302)
T PRK12702 228 KALGIGCSPPDLAFLRWSEQKVVLPSPI 255 (302)
T ss_pred eEEEecCChhhHHHHHhCCeeEEecCCC
Confidence 6888999999997665566667777763
No 354
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=32.74 E-value=63 Score=27.02 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=25.3
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCcc
Q 036571 143 SLPESLKLYKKLLSLGIKIVFLTGRPED 170 (251)
Q Consensus 143 ~~pga~ell~~L~~~G~~I~~vTnR~e~ 170 (251)
--+.+++.++..+++|+.++-+|||+-.
T Consensus 121 NS~nVl~Ai~~Ak~~gm~vI~ltG~~GG 148 (176)
T COG0279 121 NSKNVLKAIEAAKEKGMTVIALTGKDGG 148 (176)
T ss_pred CCHHHHHHHHHHHHcCCEEEEEecCCCc
Confidence 4588999999999999999999999854
No 355
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=32.59 E-value=63 Score=24.59 Aligned_cols=35 Identities=17% Similarity=0.159 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCC
Q 036571 146 ESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYT 186 (251)
Q Consensus 146 ga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~ 186 (251)
..+.+-+.|+++|++|.+.|... ..+.+...|++.
T Consensus 14 P~lala~~L~~rGh~V~~~~~~~------~~~~v~~~Gl~~ 48 (139)
T PF03033_consen 14 PFLALARALRRRGHEVRLATPPD------FRERVEAAGLEF 48 (139)
T ss_dssp HHHHHHHHHHHTT-EEEEEETGG------GHHHHHHTT-EE
T ss_pred HHHHHHHHHhccCCeEEEeeccc------ceecccccCceE
Confidence 45678899999999999999976 234447788864
No 356
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=32.39 E-value=1.2e+02 Score=26.90 Aligned_cols=51 Identities=20% Similarity=0.376 Sum_probs=37.8
Q ss_pred CCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCC
Q 036571 139 GEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGS 195 (251)
Q Consensus 139 ~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~ 195 (251)
+..+..||=...=+.|++.|++++++|..+... ..+.|+..||-. +++..+
T Consensus 68 sPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K---~~d~l~~~g~GY---Iivk~D 118 (277)
T PRK00994 68 SPNPAAPGPKKAREILKAAGIPCIVIGDAPGKK---VKDAMEEQGLGY---IIVKAD 118 (277)
T ss_pred CCCCCCCCchHHHHHHHhcCCCEEEEcCCCccc---hHHHHHhcCCcE---EEEecC
Confidence 456677776666677899999999999998652 238999999843 555544
No 357
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=32.31 E-value=3.6e+02 Score=23.98 Aligned_cols=85 Identities=16% Similarity=0.127 Sum_probs=49.5
Q ss_pred HHHHHHHHHHH--CCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCC-CCCCCccccch-HHHHHHHHhcCccEE
Q 036571 146 ESLKLYKKLLS--LGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGS-SYSGETAVVYK-SSERKRLEKKGYRII 221 (251)
Q Consensus 146 ga~ell~~L~~--~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~-~~~~kp~~~~K-~~~r~~L~~~g~~i~ 221 (251)
.++|.--+|++ .|.+|..+|=.++... .+.+..-.+|.+ +.++-.+ ...+ +++.-- ..+...+++.|+. .
T Consensus 41 ~AvEeAlrLke~~~~~eV~vlt~Gp~~a~-~~lr~aLAmGaD---raili~d~~~~~-~d~~~ta~~Laa~~~~~~~~-L 114 (260)
T COG2086 41 NAVEEALRLKEKGYGGEVTVLTMGPPQAE-EALREALAMGAD---RAILITDRAFAG-ADPLATAKALAAAVKKIGPD-L 114 (260)
T ss_pred HHHHHHHHhhccCCCceEEEEEecchhhH-HHHHHHHhcCCC---eEEEEecccccC-ccHHHHHHHHHHHHHhcCCC-E
Confidence 45555556776 6788999999986533 334444566774 3343332 2211 122222 2344456667777 5
Q ss_pred EEEcCCccccccccc
Q 036571 222 GNIGDQWSDLLGTNA 236 (251)
Q Consensus 222 ~~VGDq~sDi~ga~~ 236 (251)
+..|+|-.|-..+..
T Consensus 115 Vl~G~qa~D~~t~qv 129 (260)
T COG2086 115 VLTGKQAIDGDTGQV 129 (260)
T ss_pred EEEecccccCCccch
Confidence 669999998877743
No 358
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=32.04 E-value=1e+02 Score=29.26 Aligned_cols=45 Identities=24% Similarity=0.194 Sum_probs=35.2
Q ss_pred CCchHHHHHHHHHHHCCCeEEEE-eCCCcccHHHHHHHHHhcCCCC
Q 036571 142 PSLPESLKLYKKLLSLGIKIVFL-TGRPEDQRSVTENNLKNVGFYT 186 (251)
Q Consensus 142 ~~~pga~ell~~L~~~G~~I~~v-TnR~e~~r~~T~~~L~~~G~~~ 186 (251)
-..|.+.++++.+++.|+.+.+. ||...-......+.|.++|+..
T Consensus 86 l~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~gld~ 131 (404)
T TIGR03278 86 SCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNGVRE 131 (404)
T ss_pred ccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcCCCE
Confidence 35688999999999999999985 8865333456778888888853
No 359
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=31.93 E-value=63 Score=29.35 Aligned_cols=74 Identities=26% Similarity=0.377 Sum_probs=43.3
Q ss_pred hhHhhHHHHHHHHHHHHHhhhhcCCCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHH
Q 036571 73 QYREDSEAVAYEAIVYAQSLELAGDGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYK 152 (251)
Q Consensus 73 ~Y~~d~~~~~~~a~~~~~~~~~~~~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~ 152 (251)
.|--|-..++..|++.++. +.++||| ||+ +|. .|.+.|+.+. .+.-..---++++|+
T Consensus 244 MfIGdGAkLVRDAFaLAKE------kaP~IIF-IDE--lDA--------IGtKRfDSek------~GDREVQRTMLELLN 300 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKE------KAPTIIF-IDE--LDA--------IGTKRFDSEK------AGDREVQRTMLELLN 300 (424)
T ss_pred hhhcchHHHHHHHHHHhhc------cCCeEEE-Eec--hhh--------hccccccccc------cccHHHHHHHHHHHH
Confidence 3444666677777766643 4457776 454 121 2333444321 122234456888998
Q ss_pred HHH----HCCCeEEEEeCCCc
Q 036571 153 KLL----SLGIKIVFLTGRPE 169 (251)
Q Consensus 153 ~L~----~~G~~I~~vTnR~e 169 (251)
.|. ..-++|+-.|||-.
T Consensus 301 QLDGFss~~~vKviAATNRvD 321 (424)
T KOG0652|consen 301 QLDGFSSDDRVKVIAATNRVD 321 (424)
T ss_pred hhcCCCCccceEEEeeccccc
Confidence 886 33589999999963
No 360
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=31.04 E-value=1.4e+02 Score=22.64 Aligned_cols=39 Identities=10% Similarity=0.022 Sum_probs=30.7
Q ss_pred chHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhc-CCC
Q 036571 144 LPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNV-GFY 185 (251)
Q Consensus 144 ~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~-G~~ 185 (251)
+|...++++.+++.|+.++.||..+ .+...++..+. +++
T Consensus 42 ~~~l~~~~~~~~~~~~~~i~is~d~---~~~~~~~~~~~~~~~ 81 (140)
T cd02971 42 LCAFRDLAEEFAKGGAEVLGVSVDS---PFSHKAWAEKEGGLN 81 (140)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCC---HHHHHHHHhcccCCC
Confidence 7888888889988999999999765 45667777777 543
No 361
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=31.03 E-value=2e+02 Score=22.68 Aligned_cols=49 Identities=14% Similarity=0.211 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHCCCeEEEEeCCCccc-------HHHHHHHHHhcCCCCcceEEEeC
Q 036571 146 ESLKLYKKLLSLGIKIVFLTGRPEDQ-------RSVTENNLKNVGFYTWENLILKG 194 (251)
Q Consensus 146 ga~ell~~L~~~G~~I~~vTnR~e~~-------r~~T~~~L~~~G~~~~~~lilr~ 194 (251)
-+..+.+.++..|+++.++..|++.. .......+....++.+..++|..
T Consensus 9 va~al~~la~~lg~~v~v~d~r~e~~~~~~~~~~~~~~~~~~~~~~~~~t~Vv~th 64 (136)
T PF13478_consen 9 VARALARLAALLGFRVTVVDPRPERFPEADEVICIPPDDILEDLEIDPNTAVVMTH 64 (136)
T ss_dssp CHHHHHHHHHHCTEEEEEEES-CCC-TTSSEEECSHHHHHHHHC-S-TT-EEE--S
T ss_pred HHHHHHHHHHhCCCEEEEEcCCccccCCCCccEecChHHHHhccCCCCCeEEEEcC
Confidence 45778888999999999999998621 12233344555666655565543
No 362
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=31.02 E-value=2.7e+02 Score=25.71 Aligned_cols=77 Identities=17% Similarity=0.201 Sum_probs=42.9
Q ss_pred HHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCccEEEEEcCCc-cc
Q 036571 152 KKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRIIGNIGDQW-SD 230 (251)
Q Consensus 152 ~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i~~~VGDq~-sD 230 (251)
+.+++.|-+++++|++.....+...+.|+..|+.. .++ ... +.|...--.......++.+.+.++.||-.. -|
T Consensus 16 ~~l~~~~~r~livtd~~~~~~~~v~~~L~~~g~~~--~~~-~~~---~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D 89 (374)
T cd08183 16 ALAAELGRRVLLVTGASSLRAAWLIEALRAAGIEV--THV-VVA---GEPSVELVDAAVAEARNAGCDVVIAIGGGSVID 89 (374)
T ss_pred HHHHHcCCcEEEEECCchHHHHHHHHHHHHcCCeE--EEe-cCC---CCcCHHHHHHHHHHHHhcCCCEEEEecCchHHH
Confidence 34455478999999986545566777888888853 222 111 112111111222334456777777777644 66
Q ss_pred cccc
Q 036571 231 LLGT 234 (251)
Q Consensus 231 i~ga 234 (251)
...+
T Consensus 90 ~aK~ 93 (374)
T cd08183 90 AGKA 93 (374)
T ss_pred HHHH
Confidence 6543
No 363
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=31.01 E-value=94 Score=27.45 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCC
Q 036571 146 ESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFY 185 (251)
Q Consensus 146 ga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~ 185 (251)
-.+.|.+.|+++|..+.|++.+.+. ...+.+++.|++
T Consensus 19 Rcl~LA~~l~~~g~~v~f~~~~~~~---~~~~~i~~~g~~ 55 (279)
T TIGR03590 19 RCLTLARALHAQGAEVAFACKPLPG---DLIDLLLSAGFP 55 (279)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCH---HHHHHHHHcCCe
Confidence 4556667777778888888777633 234566666664
No 364
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=30.89 E-value=1.7e+02 Score=25.09 Aligned_cols=38 Identities=16% Similarity=0.124 Sum_probs=23.1
Q ss_pred HHHHHHHhcCc--cEEEEEcCCccccccccccCcEEEeCC
Q 036571 208 SERKRLEKKGY--RIIGNIGDQWSDLLGTNAGNRTFKLPD 245 (251)
Q Consensus 208 ~~r~~L~~~g~--~i~~~VGDq~sDi~ga~~g~r~f~lPn 245 (251)
+++.-++..|. ..+++|||+.+|+.........+...|
T Consensus 192 ~i~~~~~~~~~~~~~~~~~GD~~nD~~m~~~~~~~~a~~n 231 (256)
T TIGR00099 192 ALQSLAEALGISLEDVIAFGDGMNDIEMLEAAGYGVAMGN 231 (256)
T ss_pred HHHHHHHHcCCCHHHEEEeCCcHHhHHHHHhCCceeEecC
Confidence 34333444443 458999999999987754334444433
No 365
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=30.70 E-value=2.6e+02 Score=21.71 Aligned_cols=78 Identities=12% Similarity=0.105 Sum_probs=46.6
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCc-----ccHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCccEE
Q 036571 147 SLKLYKKLLSLGIKIVFLTGRPE-----DQRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRII 221 (251)
Q Consensus 147 a~ell~~L~~~G~~I~~vTnR~e-----~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i~ 221 (251)
+...++.+++...+.+++||... ...+...+.|.+.|++. ..+++-+.... ...--...+..+.+.+.+-+
T Consensus 23 ~~~a~~l~~~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~~-~~I~~e~~s~~---T~ena~~~~~~~~~~~~~~i 98 (150)
T cd06259 23 LDAAAELYRAGPAPKLIVSGGQGPGEGYSEAEAMARYLIELGVPA-EAILLEDRSTN---TYENARFSAELLRERGIRSV 98 (150)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCCH-HHeeecCCCCC---HHHHHHHHHHHHHhcCCCeE
Confidence 34445555555588899999853 34677888999999965 45555332211 11112233344556666677
Q ss_pred EEEcCCc
Q 036571 222 GNIGDQW 228 (251)
Q Consensus 222 ~~VGDq~ 228 (251)
+.|-|.+
T Consensus 99 ~lVTs~~ 105 (150)
T cd06259 99 LLVTSAY 105 (150)
T ss_pred EEECCHH
Confidence 7787766
No 366
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=30.41 E-value=1.3e+02 Score=25.22 Aligned_cols=65 Identities=22% Similarity=0.295 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHCCCe-EEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCccEE
Q 036571 146 ESLKLYKKLLSLGIK-IVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRII 221 (251)
Q Consensus 146 ga~ell~~L~~~G~~-I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i~ 221 (251)
...+.++.++++|+. |++=++-++.+|.-.++...++|+.....|--++ ......++.+.|++.+
T Consensus 76 ~l~~~l~~~~~~g~~~vv~G~i~sd~~~~~~e~~~~~~gl~~~~PLW~~~-----------~~~ll~e~~~~g~~~~ 141 (194)
T cd01994 76 DLKELLRKLKEEGVDAVVFGAILSEYQRTRVERVCERLGLEPLAPLWGRD-----------QEELLREMIEAGFKAI 141 (194)
T ss_pred HHHHHHHHHHHcCCCEEEECccccHHHHHHHHHHHHHcCCEEEecccCCC-----------HHHHHHHHHHcCCeEE
Confidence 445566666766776 3334444567788888888899987644443221 1245566667787743
No 367
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=30.40 E-value=2.5e+02 Score=26.30 Aligned_cols=85 Identities=18% Similarity=0.184 Sum_probs=54.0
Q ss_pred CCeEEEEeCCCcc--cHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCcc---EEEEEcCCc-ccc
Q 036571 158 GIKIVFLTGRPED--QRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYR---IIGNIGDQW-SDL 231 (251)
Q Consensus 158 G~~I~~vTnR~e~--~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~---i~~~VGDq~-sDi 231 (251)
|.+++++|+..-. ..+.....|...|+.. +. +.-++++..|.. .-...+...|.+.++. .++.+|=.. .|+
T Consensus 33 ~~k~~ivtd~~v~~~y~~~~~~~l~~~g~~v-~~-~~lp~GE~~Ksl-~~~~~i~~~ll~~~~~R~s~iialGGGvigDl 109 (360)
T COG0337 33 GRKVAIVTDETVAPLYLEKLLATLEAAGVEV-DS-IVLPDGEEYKSL-ETLEKIYDALLEAGLDRKSTLIALGGGVIGDL 109 (360)
T ss_pred CCeEEEEECchhHHHHHHHHHHHHHhcCCee-eE-EEeCCCcccccH-HHHHHHHHHHHHcCCCCCcEEEEECChHHHHH
Confidence 3499999998732 3577778888888865 33 444556666643 2233444555555543 456666655 788
Q ss_pred ccc-----cccCcEEEeCC
Q 036571 232 LGT-----NAGNRTFKLPD 245 (251)
Q Consensus 232 ~ga-----~~g~r~f~lPn 245 (251)
.|- ..|.+.+.+|-
T Consensus 110 aGF~Aaty~RGv~fiqiPT 128 (360)
T COG0337 110 AGFAAATYMRGVRFIQIPT 128 (360)
T ss_pred HHHHHHHHHcCCCeEeccc
Confidence 775 34888888873
No 368
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=30.29 E-value=78 Score=28.35 Aligned_cols=43 Identities=16% Similarity=0.221 Sum_probs=35.9
Q ss_pred chHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCC
Q 036571 144 LPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYT 186 (251)
Q Consensus 144 ~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~ 186 (251)
-+.+.-|++.|++.|-.|.+.++++-..++.+...|.+.|++.
T Consensus 53 e~kTA~L~~tL~a~GAeV~~~~sNplSTQDdvaAAL~~~Gi~V 95 (268)
T PF05221_consen 53 EAKTAVLAETLKALGAEVRWTGSNPLSTQDDVAAALAEEGIPV 95 (268)
T ss_dssp SHHHHHHHHHHHHTTEEEEEEESSTTT--HHHHHHHHHTTEEE
T ss_pred hHHHHHHHHHHHHcCCeEEEecCCCcccchHHHHHhccCCceE
Confidence 3556778999999999999999999888999999999999865
No 369
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=30.28 E-value=48 Score=27.78 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=19.4
Q ss_pred cEEEEEcCCccccccccccCcEEEeCC
Q 036571 219 RIIGNIGDQWSDLLGTNAGNRTFKLPD 245 (251)
Q Consensus 219 ~i~~~VGDq~sDi~ga~~g~r~f~lPn 245 (251)
..+++|||+.+|+.........|..-|
T Consensus 174 ~~~i~~GD~~NDi~m~~~ag~~vam~N 200 (230)
T PRK01158 174 EEVAAIGDSENDLEMFEVAGFGVAVAN 200 (230)
T ss_pred HHEEEECCchhhHHHHHhcCceEEecC
Confidence 358999999999988754444555444
No 370
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=29.79 E-value=2e+02 Score=22.89 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=23.4
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCC
Q 036571 141 APSLPESLKLYKKLLSLGIKIVFLTGRP 168 (251)
Q Consensus 141 ~~~~pga~ell~~L~~~G~~I~~vTnR~ 168 (251)
...++.+.++++..+++|++|++++..+
T Consensus 19 ~~~~~~i~~l~~~ar~~g~pVi~~~~~~ 46 (157)
T cd01012 19 DELINNTVKLAKAAKLLDVPVILTEQYP 46 (157)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeeCC
Confidence 3567889999999999999999987543
No 371
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=29.72 E-value=2e+02 Score=26.65 Aligned_cols=78 Identities=13% Similarity=0.108 Sum_probs=50.9
Q ss_pred CCcEEEEecCCC---ccCChhhHhhhcCCCCCCChHHHHHHHhcCC----CCCchHHHHHHHHHHHCCCeEEEEeCCCcc
Q 036571 98 GREIWIFDIDET---SLSNLPYYAKHGFGVEPFNSTLFNEWVNKGE----APSLPESLKLYKKLLSLGIKIVFLTGRPED 170 (251)
Q Consensus 98 ~~~avvfDIDgT---lldn~~~~~~~~~~~~~~~~~~~~~wv~~~~----~~~~pga~ell~~L~~~G~~I~~vTnR~e~ 170 (251)
..++++|+.|++ .++....-...--|...|.++..-+..+++. .||+--.+|++..|.+.+.+.++|.|-..-
T Consensus 92 ~~~g~~~~~d~~~dg~~~~~~~~~~~l~GdGDFrS~E~i~Ll~eADIVVTNPPFSLFrEyv~~Li~~~KkFlIIGN~Nai 171 (336)
T PF13651_consen 92 PKKGYIFEYDGNGDGKIDIDDIEVTPLKGDGDFRSDECIELLKEADIVVTNPPFSLFREYVAQLIEYDKKFLIIGNINAI 171 (336)
T ss_pred ccceEEEEEecCCcccccccccceeeccCCCCcCcHHHHHHHhcCCEEEeCCCcHHHHHHHHHHHHhCCCEEEEeccccc
Confidence 457889998874 1121111111112444577666666666543 689999999999999999999999998644
Q ss_pred cHHHH
Q 036571 171 QRSVT 175 (251)
Q Consensus 171 ~r~~T 175 (251)
.....
T Consensus 172 TYkei 176 (336)
T PF13651_consen 172 TYKEI 176 (336)
T ss_pred cHHHH
Confidence 33333
No 372
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.
Probab=29.69 E-value=2.1e+02 Score=23.96 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=20.9
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEe
Q 036571 142 PSLPESLKLYKKLLSLGIKIVFLT 165 (251)
Q Consensus 142 ~~~pga~ell~~L~~~G~~I~~vT 165 (251)
..++.+.++++..+++|++|+++-
T Consensus 54 ~~~~~i~~li~~ar~~g~pVi~t~ 77 (203)
T cd01013 54 QLIANIARLRDWCRQAGIPVVYTA 77 (203)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEe
Confidence 467889999999999999999863
No 373
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=29.26 E-value=1.2e+02 Score=25.04 Aligned_cols=56 Identities=25% Similarity=0.263 Sum_probs=36.5
Q ss_pred HHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHh
Q 036571 148 LKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEK 215 (251)
Q Consensus 148 ~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~ 215 (251)
.++++.+++.|++|+++|..+....+...+.|+. ...++.+... ..|+.+.+.|..
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~------k~~vl~G~SG------vGKSSLiN~L~~ 57 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKG------KTSVLLGQSG------VGKSSLINALLP 57 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTT------SEEEEECSTT------SSHHHHHHHHHT
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcC------CEEEEECCCC------CCHHHHHHHHHh
Confidence 4677889999999999999976666666666654 1233444332 346677666653
No 374
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=29.21 E-value=85 Score=23.71 Aligned_cols=70 Identities=27% Similarity=0.205 Sum_probs=42.0
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCccEEE
Q 036571 143 SLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRIIG 222 (251)
Q Consensus 143 ~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i~~ 222 (251)
-.+...++.+.|.+.|++|+ .|. .|.+.|++.|++. ..+....+. +.. -+......+.+..+..++
T Consensus 11 dk~~~~~~a~~l~~~G~~i~-aT~-------gTa~~L~~~gi~~--~~v~~~~~~-~~~---~~~~i~~~i~~~~idlVI 76 (116)
T cd01423 11 SKPELLPTAQKLSKLGYKLY-ATE-------GTADFLLENGIPV--TPVAWPSEE-PQN---DKPSLRELLAEGKIDLVI 76 (116)
T ss_pred cchhHHHHHHHHHHCCCEEE-Ecc-------HHHHHHHHcCCCc--eEeeeccCC-CCC---CchhHHHHHHcCCceEEE
Confidence 34678889999999999995 454 3578899999875 223221110 110 012344445555567777
Q ss_pred EEcC
Q 036571 223 NIGD 226 (251)
Q Consensus 223 ~VGD 226 (251)
++=+
T Consensus 77 n~~~ 80 (116)
T cd01423 77 NLPS 80 (116)
T ss_pred ECCC
Confidence 7643
No 375
>PRK04531 acetylglutamate kinase; Provisional
Probab=29.08 E-value=2.3e+02 Score=26.74 Aligned_cols=70 Identities=14% Similarity=0.225 Sum_probs=49.5
Q ss_pred HHHHHHHHhhhhcCCCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEE
Q 036571 83 YEAIVYAQSLELAGDGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIV 162 (251)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~ 162 (251)
.++..|.+.++.. ...+.+|+=|+|-++.. .++...+-+..|++.|++++
T Consensus 21 ~e~~~~l~~F~~~-~~~~~~VIKiGG~~l~~-----------------------------~~~~l~~dla~L~~~G~~~V 70 (398)
T PRK04531 21 KEISQYLKRFSQL-DAERFAVIKVGGAVLRD-----------------------------DLEALASSLSFLQEVGLTPI 70 (398)
T ss_pred hhhHHHHHHHhCc-CCCcEEEEEEChHHhhc-----------------------------CHHHHHHHHHHHHHCCCcEE
Confidence 4566676666533 23478888899977753 13556666778899999999
Q ss_pred EEeCCCcccHHHHHHHHHhcCCCC
Q 036571 163 FLTGRPEDQRSVTENNLKNVGFYT 186 (251)
Q Consensus 163 ~vTnR~e~~r~~T~~~L~~~G~~~ 186 (251)
+|=|-. ....+.|.+.|++.
T Consensus 71 lVHGgg----pqI~~~l~~~gie~ 90 (398)
T PRK04531 71 VVHGAG----PQLDAELDAAGIEK 90 (398)
T ss_pred EEECCC----HHHHHHHHHcCCCc
Confidence 998875 34568888999975
No 376
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=28.73 E-value=2.4e+02 Score=25.46 Aligned_cols=17 Identities=35% Similarity=0.513 Sum_probs=11.2
Q ss_pred HHHHhcCccEEEEEcCCc
Q 036571 211 KRLEKKGYRIIGNIGDQW 228 (251)
Q Consensus 211 ~~L~~~g~~i~~~VGDq~ 228 (251)
+++.++||.+ +++||..
T Consensus 110 ~~~~~~Gy~i-viiG~~~ 126 (281)
T PRK12360 110 EEYYNKGYSI-IIVGDKN 126 (281)
T ss_pred HHHHhCCCEE-EEEcCCC
Confidence 3455678876 4488865
No 377
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=28.72 E-value=63 Score=27.46 Aligned_cols=85 Identities=15% Similarity=-0.011 Sum_probs=42.9
Q ss_pred CCeEEEEeCCCc-ccHHHHHHHHHhcCCCCcceEEEeCCC---CCCCccccchH-HHHHHHHhcCc--cEEEEEcCCccc
Q 036571 158 GIKIVFLTGRPE-DQRSVTENNLKNVGFYTWENLILKGSS---YSGETAVVYKS-SERKRLEKKGY--RIIGNIGDQWSD 230 (251)
Q Consensus 158 G~~I~~vTnR~e-~~r~~T~~~L~~~G~~~~~~lilr~~~---~~~kp~~~~K~-~~r~~L~~~g~--~i~~~VGDq~sD 230 (251)
.+++.+...... .......+.|...+.. ..++..... ..++ ..-|. +.+.-++..|. +.+++|||+.+|
T Consensus 112 ~~~i~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~ei~~~--~~~K~~al~~l~~~~g~~~~~~i~~GD~~nD 187 (236)
T TIGR02471 112 PFKISYLLDPEGEPILPQIRQRLRQQSQA--AKVILSCGWFLDVLPL--RASKGLALRYLSYRWGLPLEQILVAGDSGND 187 (236)
T ss_pred CeeEEEEECcccchHHHHHHHHHHhccCC--EEEEEECCceEEEeeC--CCChHHHHHHHHHHhCCCHHHEEEEcCCccH
Confidence 466777654321 1234456667766543 233333211 0110 11233 23332333443 368899999999
Q ss_pred cccccccCcEEEeCCC
Q 036571 231 LLGTNAGNRTFKLPDP 246 (251)
Q Consensus 231 i~ga~~g~r~f~lPnp 246 (251)
+.........|..-|.
T Consensus 188 ~~ml~~~~~~iav~na 203 (236)
T TIGR02471 188 EEMLRGLTLGVVVGNH 203 (236)
T ss_pred HHHHcCCCcEEEEcCC
Confidence 9877544555665553
No 378
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=28.72 E-value=1.1e+02 Score=29.17 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=38.9
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCc
Q 036571 142 PSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTW 187 (251)
Q Consensus 142 ~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~ 187 (251)
...+.+.-++..|++.|-+|.+.+.++-..++.+...|.+.|++.+
T Consensus 40 hl~~~Ta~l~~~L~~~GA~v~~~~~np~stqd~vaaaL~~~gi~v~ 85 (406)
T TIGR00936 40 HVTVETAVLIETLVAGGAEVAWTSCNPLSTQDDVAAALAKAGIPVF 85 (406)
T ss_pred echHHHHHHHHHHHHcCCEEEEEccCCccccHHHHHHHHhCCceEE
Confidence 3456677889999999999999999988788999999999998753
No 379
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=28.71 E-value=1.3e+02 Score=30.82 Aligned_cols=88 Identities=23% Similarity=0.377 Sum_probs=55.3
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCC--cc--eEE-----------------EeCCCCCC
Q 036571 141 APSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYT--WE--NLI-----------------LKGSSYSG 199 (251)
Q Consensus 141 ~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~--~~--~li-----------------lr~~~~~~ 199 (251)
+||...+-+.++.....|..|-.+|+-. +..-.+.=+++|... |. .+. -..++..+
T Consensus 491 dpprhdsa~tirral~lGv~Vkmitgdq---laI~keTgrrlgmgtnmypss~llG~~~~~~~~~~~v~elie~adgfAg 567 (942)
T KOG0205|consen 491 DPPRHDSAETIRRALNLGVNVKMITGDQ---LAIAKETGRRLGMGTNMYPSSALLGLGKDGSMPGSPVDELIEKADGFAG 567 (942)
T ss_pred CCCccchHHHHHHHHhccceeeeecchH---HHHHHhhhhhhccccCcCCchhhccCCCCCCCCCCcHHHHhhhccCccc
Confidence 5677888999999999999999999976 333333334444321 11 111 11111101
Q ss_pred CccccchHHHHHHHHhcCccEEEEEcCCcccccc
Q 036571 200 ETAVVYKSSERKRLEKKGYRIIGNIGDQWSDLLG 233 (251)
Q Consensus 200 kp~~~~K~~~r~~L~~~g~~i~~~VGDq~sDi~g 233 (251)
-.|+.|.+.-+.|+..|| ++++.||..+|-.+
T Consensus 568 -VfpehKy~iV~~Lq~r~h-i~gmtgdgvndapa 599 (942)
T KOG0205|consen 568 -VFPEHKYEIVKILQERKH-IVGMTGDGVNDAPA 599 (942)
T ss_pred -cCHHHHHHHHHHHhhcCc-eecccCCCcccchh
Confidence 123456777777877665 78999999998654
No 380
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=28.70 E-value=4.4e+02 Score=23.78 Aligned_cols=41 Identities=10% Similarity=0.030 Sum_probs=30.1
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCC
Q 036571 143 SLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFY 185 (251)
Q Consensus 143 ~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~ 185 (251)
..|...++++.++++|..+.+.||-.-- +.....|...|+.
T Consensus 85 L~pdl~eiv~~~~~~g~~v~l~TNG~ll--~~~~~~l~~~~~~ 125 (318)
T TIGR03470 85 LHPEIDEIVRGLVARKKFVYLCTNALLL--EKKLDKFEPSPYL 125 (318)
T ss_pred ccccHHHHHHHHHHcCCeEEEecCceeh--HHHHHHHHhCCCc
Confidence 4577889999999999999999998632 2234556666653
No 381
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=28.66 E-value=4.3e+02 Score=24.48 Aligned_cols=79 Identities=13% Similarity=0.115 Sum_probs=44.6
Q ss_pred HHHHHHHHCC-CeEEEEeCCCcc---cHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCccEEEEE
Q 036571 149 KLYKKLLSLG-IKIVFLTGRPED---QRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRIIGNI 224 (251)
Q Consensus 149 ell~~L~~~G-~~I~~vTnR~e~---~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i~~~V 224 (251)
++-+.+++.| -+++++|++.-. ..+...+.|++.|+.. .++ . +..+.|....-......+.+.+.+.++.|
T Consensus 20 ~l~~~~~~~g~~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~--~~~-~--~v~~~p~~~~v~~~~~~~~~~~~D~IIai 94 (382)
T PRK10624 20 ALTDEVKRRGFKKALIVTDKTLVKCGVVAKVTDVLDAAGLAY--EIY-D--GVKPNPTIEVVKEGVEVFKASGADYLIAI 94 (382)
T ss_pred HHHHHHHhcCCCEEEEEeCcchhhCcchHHHHHHHHHCCCeE--EEe-C--CCCCCcCHHHHHHHHHHHHhcCCCEEEEe
Confidence 3345566667 588889987532 3556778898888853 222 1 21222211222233344555678888888
Q ss_pred cC-Cccccc
Q 036571 225 GD-QWSDLL 232 (251)
Q Consensus 225 GD-q~sDi~ 232 (251)
|- +.-|+.
T Consensus 95 GGGS~iD~a 103 (382)
T PRK10624 95 GGGSPQDTC 103 (382)
T ss_pred CChHHHHHH
Confidence 87 335554
No 382
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=28.58 E-value=2.6e+02 Score=25.41 Aligned_cols=107 Identities=16% Similarity=0.188 Sum_probs=58.1
Q ss_pred hheecccccccccccchhhhhhhhccchhhHhhHHHHHHHHHHHHHhhhhcCCCCcEEEEecCCCccCChhhHhhhc---
Q 036571 45 AVETNNIIGWKTTPEKCEGYLGHYMLGQQYREDSEAVAYEAIVYAQSLELAGDGREIWIFDIDETSLSNLPYYAKHG--- 121 (251)
Q Consensus 45 ~~e~nn~~~~~~vp~~c~~~v~~y~~~~~Y~~d~~~~~~~a~~~~~~~~~~~~~~~avvfDIDgTlldn~~~~~~~~--- 121 (251)
+.+.||+..++.| +..|.-+.. .+ +....+.++++. .+++-.||+| =.+=||..+|....
T Consensus 73 gl~~nn~~~Y~~v-------LTGY~~n~~------~l-~~i~~iv~~lk~-~np~~~wv~D--PVmGDnG~lYV~eelip 135 (308)
T KOG2599|consen 73 GLLLNNLNKYDAV-------LTGYLPNVS------FL-QKIADIVKKLKK-KNPNLTWVCD--PVMGDNGRLYVPEELIP 135 (308)
T ss_pred HHhhcccccccee-------eeeccCChh------HH-HHHHHHHHHHHh-cCCCeEEEeC--ccccCCccEeccHHHHH
Confidence 4577888777644 233333332 22 233344455553 3445566665 45556655443311
Q ss_pred ------CC-CCCCChHHHHHHHhc-CCCCCchHHHHHHHHHHHCCCeEEEEeCCC
Q 036571 122 ------FG-VEPFNSTLFNEWVNK-GEAPSLPESLKLYKKLLSLGIKIVFLTGRP 168 (251)
Q Consensus 122 ------~~-~~~~~~~~~~~wv~~-~~~~~~pga~ell~~L~~~G~~I~~vTnR~ 168 (251)
.. ..-..|..|+.=+-. ....-...+++.++.|+++|++.+++|+-.
T Consensus 136 vYr~~i~~ladiiTPNqFE~EiLtg~~I~t~eda~~a~~~lhq~~v~~vVITS~~ 190 (308)
T KOG2599|consen 136 VYRDLIIPLADIITPNQFEAEILTGMEIRTEEDAKRAVEKLHQKGVKTVVITSFD 190 (308)
T ss_pred HHHHhhcchhhhcCCcchhhhhhcCCeeccHHHHHHHHHHHHHhCCCEEEEEeee
Confidence 11 001123333321122 235667889999999999999999999976
No 383
>PRK02947 hypothetical protein; Provisional
Probab=28.46 E-value=73 Score=27.80 Aligned_cols=27 Identities=15% Similarity=0.178 Sum_probs=24.0
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCc
Q 036571 143 SLPESLKLYKKLLSLGIKIVFLTGRPE 169 (251)
Q Consensus 143 ~~pga~ell~~L~~~G~~I~~vTnR~e 169 (251)
--+.+.++++.++++|.+++.+|+...
T Consensus 118 ~t~~~i~~~~~a~~~g~~vI~iT~~~~ 144 (246)
T PRK02947 118 RNPVPIEMALEAKERGAKVIAVTSLAY 144 (246)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCcc
Confidence 457899999999999999999999863
No 384
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.44 E-value=1.1e+02 Score=30.26 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHCCCeEEEEeCCCcc
Q 036571 145 PESLKLYKKLLSLGIKIVFLTGRPED 170 (251)
Q Consensus 145 pga~ell~~L~~~G~~I~~vTnR~e~ 170 (251)
=.+--+.++++-+|..++||||.+|.
T Consensus 29 l~ADv~aRy~Rl~G~~v~fvtGtDeH 54 (558)
T COG0143 29 LAADVYARYLRLRGYEVFFLTGTDEH 54 (558)
T ss_pred HHHHHHHHHHHhcCCeEEEEeccCCC
Confidence 34455677888999999999999875
No 385
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=28.41 E-value=1.4e+02 Score=22.88 Aligned_cols=42 Identities=21% Similarity=0.140 Sum_probs=29.1
Q ss_pred CCchHHHHHHHHHHHCCC-eE-EEEeCCCcccHHHHHHHHHhcCCCC
Q 036571 142 PSLPESLKLYKKLLSLGI-KI-VFLTGRPEDQRSVTENNLKNVGFYT 186 (251)
Q Consensus 142 ~~~pga~ell~~L~~~G~-~I-~~vTnR~e~~r~~T~~~L~~~G~~~ 186 (251)
...+.+.++++.|+++|. .+ +++-|+. .....+.|.++|+..
T Consensus 62 ~~~~~~~~~~~~L~~~~~~~i~i~~GG~~---~~~~~~~~~~~G~d~ 105 (122)
T cd02071 62 GHMTLFPEVIELLRELGAGDILVVGGGII---PPEDYELLKEMGVAE 105 (122)
T ss_pred hhHHHHHHHHHHHHhcCCCCCEEEEECCC---CHHHHHHHHHCCCCE
Confidence 455678889999999976 43 4555554 234467888999854
No 386
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=28.18 E-value=2e+02 Score=25.38 Aligned_cols=96 Identities=15% Similarity=0.069 Sum_probs=48.6
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCc----ceEEEeCCCCCCCccccchHHHHHHHHhcCc
Q 036571 143 SLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTW----ENLILKGSSYSGETAVVYKSSERKRLEKKGY 218 (251)
Q Consensus 143 ~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~----~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~ 218 (251)
-+|..+..|..+++. ...++.-..+..-......|...|+... +..++.....+++. -+..+..-....+.
T Consensus 135 Glpre~aaLa~~rEy--seti~~rs~d~~~~~~~~~L~e~glt~v~garf~~v~~as~gKg~A---a~~ll~~y~rl~~~ 209 (274)
T COG3769 135 GLPREQAALAMLREY--SETIIWRSSDERMAQFTARLNERGLTFVHGARFWHVLDASAGKGQA---ANWLLETYRRLGGA 209 (274)
T ss_pred CCChHHhHHHHHHHh--hhheeecccchHHHHHHHHHHhcCceEEeccceEEEeccccCccHH---HHHHHHHHHhcCce
Confidence 445555556666654 3333443333334456778888888531 12222222223321 11111111222345
Q ss_pred cEEEEEcCCccccccccccCcEEEe
Q 036571 219 RIIGNIGDQWSDLLGTNAGNRTFKL 243 (251)
Q Consensus 219 ~i~~~VGDq~sDi~ga~~g~r~f~l 243 (251)
+.++-+||+.+|+.--..+++.|.+
T Consensus 210 r~t~~~GDg~nD~Pl~ev~d~AfiV 234 (274)
T COG3769 210 RTTLGLGDGPNDAPLLEVMDYAFIV 234 (274)
T ss_pred eEEEecCCCCCcccHHHhhhhheee
Confidence 5789999999999765555555544
No 387
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=28.08 E-value=40 Score=24.40 Aligned_cols=22 Identities=14% Similarity=0.289 Sum_probs=18.2
Q ss_pred CCcEEEEecCCCccCChhhHhh
Q 036571 98 GREIWIFDIDETSLSNLPYYAK 119 (251)
Q Consensus 98 ~~~avvfDIDgTlldn~~~~~~ 119 (251)
..-.++++=|||.+++..|+..
T Consensus 39 ~~~~lvL~eDGT~VddEeyF~t 60 (78)
T PF02017_consen 39 EPVRLVLEEDGTEVDDEEYFQT 60 (78)
T ss_dssp STCEEEETTTTCBESSCHHHCC
T ss_pred cCcEEEEeCCCcEEccHHHHhh
Confidence 4567899999999999888743
No 388
>cd00599 GH25_muramidase Endo-N-acetylmuramidases (muramidases) are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family of muramidases contains a glycosyl hydrolase family 25 (GH25) catalytic domain and is found in bacteria, fungi, slime molds, round worms, protozoans and bacteriophages. The bacteriophage members are referred to as endolysins which are involved in lysing the host cell at the end of the replication cycle to allow release of mature phage particles. Endolysins are typically modular enzymes consisting of a catalytically active domain that hydrolyzes the peptidoglycan cell wall and a cell wall-binding domain that anchors the protein to the cell wall. Endolysins generally have narrow substrate specificities with either intra-species or intra-genus bacteriolytic activity.
Probab=27.98 E-value=97 Score=25.27 Aligned_cols=62 Identities=13% Similarity=0.094 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhhhhcCCCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCC-C
Q 036571 81 VAYEAIVYAQSLELAGDGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLG-I 159 (251)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G-~ 159 (251)
...||..+.+.++.. .+...+++|+...-..+. .......+.++++.++++| +
T Consensus 66 a~~qa~~fi~~~~~~-~~~~~~~lDvE~~~~~~~-------------------------~~~~~~~~~~f~~~~~~~gg~ 119 (186)
T cd00599 66 AEAQADNFVNTVPRD-PGSLPLVLDVEDTGGGCS-------------------------AAALAAWLNAFLNEVEALTGK 119 (186)
T ss_pred HHHHHHHHHHHccCc-CCCCCeEEEEecCCCCCC-------------------------HHHHHHHHHHHHHHHHHHHCC
Confidence 446777777666543 355678889988433210 1234456788999999997 9
Q ss_pred eEEEEeCCC
Q 036571 160 KIVFLTGRP 168 (251)
Q Consensus 160 ~I~~vTnR~ 168 (251)
++.+-|+..
T Consensus 120 ~~~iY~~~~ 128 (186)
T cd00599 120 KPIIYTSPS 128 (186)
T ss_pred ceEEEEcHH
Confidence 999999976
No 389
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=27.95 E-value=3.8e+02 Score=24.59 Aligned_cols=79 Identities=16% Similarity=0.169 Sum_probs=44.2
Q ss_pred HHHHHHCC-CeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCccEEEEEcCCc-
Q 036571 151 YKKLLSLG-IKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRIIGNIGDQW- 228 (251)
Q Consensus 151 l~~L~~~G-~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i~~~VGDq~- 228 (251)
-+.+++.| -++++||++.....+...+.|++.|+.. .++..- .+.|...--......+++.+.+.++.||-..
T Consensus 15 ~~~~~~~g~~~~livtd~~~~~~~~~~~~l~~~~~~~---~~~~~~--~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~ 89 (367)
T cd08182 15 PSLLKGLGGKRVLLVTGPRSAIASGLTDILKPLGTLV---VVFDDV--QPNPDLEDLAAGIRLLREFGPDAVLAVGGGSV 89 (367)
T ss_pred HHHHHhcCCCeEEEEeCchHHHHHHHHHHHHHcCCeE---EEEcCc--CCCcCHHHHHHHHHHHHhcCcCEEEEeCCcHH
Confidence 34455666 4799999987555566778888888532 122211 1112111112233344456778788888743
Q ss_pred cccccc
Q 036571 229 SDLLGT 234 (251)
Q Consensus 229 sDi~ga 234 (251)
-|+..+
T Consensus 90 ~D~aK~ 95 (367)
T cd08182 90 LDTAKA 95 (367)
T ss_pred HHHHHH
Confidence 676544
No 390
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=27.81 E-value=2.1e+02 Score=28.11 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=30.8
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCC
Q 036571 143 SLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYT 186 (251)
Q Consensus 143 ~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~ 186 (251)
.+....++.++++++|+++.++--++ ...+.|++.|+..
T Consensus 511 g~~~L~~l~~~l~~~g~~l~l~~~~~-----~v~~~l~~~gl~~ 549 (563)
T TIGR00815 511 GIHALEELRKELKARGIQLLLANPNK-----AVRSTLKRGGLVE 549 (563)
T ss_pred HHHHHHHHHHHHHHcCCEEEEecCCh-----HHHHHHHHCCchh
Confidence 45556788999999999999887665 5678888888854
No 391
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=27.77 E-value=1.7e+02 Score=31.17 Aligned_cols=59 Identities=22% Similarity=0.344 Sum_probs=37.3
Q ss_pred HHHHHHhhhhcCCCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEE
Q 036571 85 AIVYAQSLELAGDGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFL 164 (251)
Q Consensus 85 a~~~~~~~~~~~~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~v 164 (251)
....++.++..+=..+++.+|+|=+ + ++..-.+| ...+|.-.+++++|+++|++++.+
T Consensus 203 V~eva~~fre~~IP~DvIwlDidYm--~--------g~~~FTwD------------~~rFPdP~~mv~~Lh~~G~kvv~i 260 (978)
T PLN02763 203 VAEIARTFREKKIPCDVVWMDIDYM--D--------GFRCFTFD------------KERFPDPKGLADDLHSIGFKAIWM 260 (978)
T ss_pred HHHHHHHHHHcCCCceEEEEehhhh--c--------CCCceeEC------------cccCCCHHHHHHHHHHCCCEEEEE
Confidence 3344455554555678999998721 1 11111121 345678899999999999998776
Q ss_pred e
Q 036571 165 T 165 (251)
Q Consensus 165 T 165 (251)
.
T Consensus 261 i 261 (978)
T PLN02763 261 L 261 (978)
T ss_pred E
Confidence 5
No 392
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=27.74 E-value=71 Score=27.94 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=22.5
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCC
Q 036571 141 APSLPESLKLYKKLLSLGIKIVFLTGR 167 (251)
Q Consensus 141 ~~~~pga~ell~~L~~~G~~I~~vTnR 167 (251)
..-+..++.+++...++|++-+++|+-
T Consensus 16 p~s~eesl~ml~~A~~qGvt~iVaTsH 42 (254)
T COG4464 16 PKSLEESLAMLREAVRQGVTKIVATSH 42 (254)
T ss_pred CCcHHHHHHHHHHHHHcCceEEeeccc
Confidence 456778889999999999999999874
No 393
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=27.63 E-value=3.4e+02 Score=23.90 Aligned_cols=80 Identities=13% Similarity=0.256 Sum_probs=44.0
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCC--------------Ccc--cH------------HHHHHHHHhcCCCCcceEEEeC
Q 036571 143 SLPESLKLYKKLLSLGIKIVFLTGR--------------PED--QR------------SVTENNLKNVGFYTWENLILKG 194 (251)
Q Consensus 143 ~~pga~ell~~L~~~G~~I~~vTnR--------------~e~--~r------------~~T~~~L~~~G~~~~~~lilr~ 194 (251)
.+..+.+.+..++++|.++++||+- +.. .+ ......|...|++. .++++..
T Consensus 32 ~i~~~~~~I~~~~~~g~~vvlV~Sga~~~g~~~l~~~~~~~~~~~~~a~aa~Gq~~l~~~~~~~~~~~g~~~-~q~llT~ 110 (266)
T PRK12314 32 RIEQLVFVISDLMNKGKEVILVSSGAIGAGLTKLKLDKRPTSLAEKQALAAVGQPELMSLYSKFFAEYGIVV-AQILLTR 110 (266)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEeeCcccccceeeccccCCCCHHHHHHHHHHhHHHHHHHHHHHHHHcCCeE-EEEEEec
Confidence 3556677788888999999987442 100 11 12246677788876 4566665
Q ss_pred CCCCCCccccchHHHHHHHHhcCccEEEE
Q 036571 195 SSYSGETAVVYKSSERKRLEKKGYRIIGN 223 (251)
Q Consensus 195 ~~~~~kp~~~~K~~~r~~L~~~g~~i~~~ 223 (251)
++................+.+.|+-++++
T Consensus 111 ~~~~~~~~~~~~~~~l~~ll~~g~IPVv~ 139 (266)
T PRK12314 111 DDFDSPKSRANVKNTFESLLELGILPIVN 139 (266)
T ss_pred ccccchHHHHHHHHHHHHHHHCCCEEEEc
Confidence 54321100011123344555567766665
No 394
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=27.54 E-value=4.1e+02 Score=24.58 Aligned_cols=78 Identities=12% Similarity=0.121 Sum_probs=43.7
Q ss_pred HHHHHHHCC-CeEEEEeCCCcc---cHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCccEEEEEc
Q 036571 150 LYKKLLSLG-IKIVFLTGRPED---QRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRIIGNIG 225 (251)
Q Consensus 150 ll~~L~~~G-~~I~~vTnR~e~---~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i~~~VG 225 (251)
+-+.+++.| -+++++|++.-. ..+...+.|++.|+.. . ++. +..+.|...--......+.+.+.+.++.||
T Consensus 20 l~~~l~~~g~~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~--~-~~~--~v~~~p~~~~v~~~~~~~~~~~~D~IiaiG 94 (379)
T TIGR02638 20 IVDEVKRRGFKKALVVTDKDLIKFGVADKVTDLLDEAGIAY--E-LFD--EVKPNPTITVVKAGVAAFKASGADYLIAIG 94 (379)
T ss_pred HHHHHHhcCCCEEEEEcCcchhhccchHHHHHHHHHCCCeE--E-EEC--CCCCCcCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 335566667 588899987632 3566778888888752 2 222 111222111112233344456777777787
Q ss_pred C-Cccccc
Q 036571 226 D-QWSDLL 232 (251)
Q Consensus 226 D-q~sDi~ 232 (251)
- +.-|..
T Consensus 95 GGSviD~a 102 (379)
T TIGR02638 95 GGSPIDTA 102 (379)
T ss_pred ChHHHHHH
Confidence 7 346665
No 395
>PLN00094 aconitate hydratase 2; Provisional
Probab=27.50 E-value=3e+02 Score=29.04 Aligned_cols=33 Identities=12% Similarity=0.227 Sum_probs=24.3
Q ss_pred HHHHHHHHHHCCCeEEEEeCCC--cccHHHHHHHH
Q 036571 147 SLKLYKKLLSLGIKIVFLTGRP--EDQRSVTENNL 179 (251)
Q Consensus 147 a~ell~~L~~~G~~I~~vTnR~--e~~r~~T~~~L 179 (251)
.++.+..|+++|++|+++=.+- -..|+.....|
T Consensus 281 ~~~~i~~lk~~g~~iivvG~nfG~GSSResA~nsl 315 (938)
T PLN00094 281 PIAQIEELKKKGHPLAYVGDVVGTGSSRKSATNSV 315 (938)
T ss_pred HHHHHHHHHHcCCceEEECCceecCCchHHHHHHH
Confidence 8889999999999999873221 12377777777
No 396
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=27.40 E-value=1.2e+02 Score=28.96 Aligned_cols=44 Identities=11% Similarity=0.164 Sum_probs=38.1
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCC
Q 036571 143 SLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYT 186 (251)
Q Consensus 143 ~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~ 186 (251)
.-+.+.-|+..|++.|-+|.+.+.++-..++.+...|.+.|++.
T Consensus 45 l~~~ta~l~~~L~~~GA~v~~~~~np~stqd~vaa~l~~~gi~v 88 (413)
T cd00401 45 MTVQTAVLIETLVALGAEVRWSSCNIFSTQDHAAAAIAAAGIPV 88 (413)
T ss_pred chHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhcCceE
Confidence 44667788999999999999999988888999999999999875
No 397
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=27.14 E-value=4.2e+02 Score=25.84 Aligned_cols=28 Identities=14% Similarity=0.301 Sum_probs=17.3
Q ss_pred CCCeEEEEeCCCcccHHHHHHHHH-hcCCCC
Q 036571 157 LGIKIVFLTGRPEDQRSVTENNLK-NVGFYT 186 (251)
Q Consensus 157 ~G~~I~~vTnR~e~~r~~T~~~L~-~~G~~~ 186 (251)
.|.++++...-. +.....+.|. .+|+..
T Consensus 292 ~Gkrv~I~gd~~--~a~~l~~~L~~ElGm~v 320 (519)
T PRK02910 292 TGKRVFVFGDAT--HAVAAARILSDELGFEV 320 (519)
T ss_pred cCCEEEEEcCcH--HHHHHHHHHHHhcCCeE
Confidence 577777666532 2445566676 688864
No 398
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=27.05 E-value=85 Score=27.72 Aligned_cols=28 Identities=14% Similarity=0.166 Sum_probs=24.6
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCcc
Q 036571 143 SLPESLKLYKKLLSLGIKIVFLTGRPED 170 (251)
Q Consensus 143 ~~pga~ell~~L~~~G~~I~~vTnR~e~ 170 (251)
-.+.+.++++.++++|.+++.+|+....
T Consensus 199 ~t~~~~~~~~~ak~~g~~ii~IT~~~~s 226 (292)
T PRK11337 199 RTSDVIEAVELAKKNGAKIICITNSYHS 226 (292)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 4578999999999999999999998744
No 399
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=26.93 E-value=1.2e+02 Score=22.10 Aligned_cols=72 Identities=24% Similarity=0.207 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEE-eCCCCCCCccccchHHHHHHHHhcCccEEEEE
Q 036571 146 ESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLIL-KGSSYSGETAVVYKSSERKRLEKKGYRIIGNI 224 (251)
Q Consensus 146 ga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lil-r~~~~~~kp~~~~K~~~r~~L~~~g~~i~~~V 224 (251)
+++++.+.|.+.|++|+ .|+ -|.+.|+++|++. ..+.- ...+.. +.-.......+.......+++.
T Consensus 1 e~~~~a~~l~~lG~~i~-AT~-------gTa~~L~~~Gi~~-~~v~~~~~~~~~----~~g~~~i~~~i~~~~IdlVIn~ 67 (95)
T PF02142_consen 1 EIVPLAKRLAELGFEIY-ATE-------GTAKFLKEHGIEV-TEVVNKIGEGES----PDGRVQIMDLIKNGKIDLVINT 67 (95)
T ss_dssp THHHHHHHHHHTTSEEE-EEH-------HHHHHHHHTT--E-EECCEEHSTG-G----GTHCHHHHHHHHTTSEEEEEEE
T ss_pred CHHHHHHHHHHCCCEEE-ECh-------HHHHHHHHcCCCc-eeeeeecccCcc----CCchhHHHHHHHcCCeEEEEEe
Confidence 46889999999998765 444 4678999999973 12211 111100 0111134555555555666666
Q ss_pred cCCccc
Q 036571 225 GDQWSD 230 (251)
Q Consensus 225 GDq~sD 230 (251)
=+..++
T Consensus 68 ~~~~~~ 73 (95)
T PF02142_consen 68 PYPFSD 73 (95)
T ss_dssp --THHH
T ss_pred CCCCcc
Confidence 555433
No 400
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=26.83 E-value=79 Score=27.68 Aligned_cols=29 Identities=21% Similarity=0.194 Sum_probs=25.1
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCCcc
Q 036571 142 PSLPESLKLYKKLLSLGIKIVFLTGRPED 170 (251)
Q Consensus 142 ~~~pga~ell~~L~~~G~~I~~vTnR~e~ 170 (251)
.-.+.+.+.++.++++|.+|+.+|+.+..
T Consensus 186 g~~~~~~~~~~~ak~~ga~iI~IT~~~~s 214 (278)
T PRK11557 186 GERRELNLAADEALRVGAKVLAITGFTPN 214 (278)
T ss_pred CCCHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 44678899999999999999999998744
No 401
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=26.80 E-value=3.8e+02 Score=22.41 Aligned_cols=36 Identities=14% Similarity=0.221 Sum_probs=20.1
Q ss_pred HHHHHHHHHCCC--eEEE-EeCCCcccHHHHHHHHHhcCCCC
Q 036571 148 LKLYKKLLSLGI--KIVF-LTGRPEDQRSVTENNLKNVGFYT 186 (251)
Q Consensus 148 ~ell~~L~~~G~--~I~~-vTnR~e~~r~~T~~~L~~~G~~~ 186 (251)
..+++.+.+.+. .|.+ +|+|++. ...+..+++|++.
T Consensus 15 ~~ll~~~~~~~l~~~I~~vi~~~~~~---~~~~~A~~~gip~ 53 (190)
T TIGR00639 15 QAIIDACKEGKIPASVVLVISNKPDA---YGLERAAQAGIPT 53 (190)
T ss_pred HHHHHHHHcCCCCceEEEEEECCccc---hHHHHHHHcCCCE
Confidence 445566665544 4443 5777632 3345566777764
No 402
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=26.76 E-value=1.8e+02 Score=22.74 Aligned_cols=39 Identities=5% Similarity=-0.089 Sum_probs=31.2
Q ss_pred chHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCC
Q 036571 144 LPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFY 185 (251)
Q Consensus 144 ~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~ 185 (251)
++...++.+.++++|+.++-||-.+ .+...+++++.|++
T Consensus 50 ~~~l~~~~~~~~~~~v~vi~Is~d~---~~~~~~~~~~~~~~ 88 (154)
T PRK09437 50 ACGLRDNMDELKKAGVVVLGISTDK---PEKLSRFAEKELLN 88 (154)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCC---HHHHHHHHHHhCCC
Confidence 4556778888999999999998754 56777888888885
No 403
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=26.69 E-value=1.2e+02 Score=29.11 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=39.3
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCC
Q 036571 142 PSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYT 186 (251)
Q Consensus 142 ~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~ 186 (251)
...+.+.-|++.|++.|-+|.+.+.++-..++.+...|.+.|++.
T Consensus 56 Hl~~~Ta~l~~~L~~~GA~v~~~~~np~Stqd~vaaaL~~~gi~v 100 (425)
T PRK05476 56 HMTIQTAVLIETLKALGAEVRWASCNPFSTQDDVAAALAAAGIPV 100 (425)
T ss_pred eccccHHHHHHHHHHcCCEEEEEeCCCcccCHHHHHHHHHCCceE
Confidence 445677889999999999999999988888999999999999875
No 404
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=26.61 E-value=93 Score=25.96 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=10.8
Q ss_pred HHHHHHHHCCCeEEEEeCCCc
Q 036571 149 KLYKKLLSLGIKIVFLTGRPE 169 (251)
Q Consensus 149 ell~~L~~~G~~I~~vTnR~e 169 (251)
.++..++++|++++++.+|-.
T Consensus 109 nll~~a~~~~ip~~LvNarls 129 (186)
T PF04413_consen 109 NLLREAKRRGIPVVLVNARLS 129 (186)
T ss_dssp HHHHH-----S-EEEEEE---
T ss_pred HHHHHHhhcCCCEEEEeeeec
Confidence 577899999999999999964
No 405
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=26.33 E-value=2.6e+02 Score=20.70 Aligned_cols=41 Identities=20% Similarity=0.190 Sum_probs=28.7
Q ss_pred HHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeC
Q 036571 149 KLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKG 194 (251)
Q Consensus 149 ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~ 194 (251)
+....|++.|+++++|+--+ .+...+..+..+++. ++++-+
T Consensus 4 ~~~~~l~~~gv~lv~I~~g~---~~~~~~f~~~~~~p~--~ly~D~ 44 (115)
T PF13911_consen 4 RRKPELEAAGVKLVVIGCGS---PEGIEKFCELTGFPF--PLYVDP 44 (115)
T ss_pred HhHHHHHHcCCeEEEEEcCC---HHHHHHHHhccCCCC--cEEEeC
Confidence 34678899999999999766 334666666778864 355433
No 406
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=26.29 E-value=2.9e+02 Score=20.86 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHC---CCeEEEEeCCCcccHHHHHHHHHhcCCC
Q 036571 145 PESLKLYKKLLSL---GIKIVFLTGRPEDQRSVTENNLKNVGFY 185 (251)
Q Consensus 145 pga~ell~~L~~~---G~~I~~vTnR~e~~r~~T~~~L~~~G~~ 185 (251)
|...+++..+.+. ++++.+.|+..... ....+.|.++|..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~-~~~l~~l~~~~~~ 102 (166)
T PF04055_consen 60 PDFIELLELLRKIKKRGIRISINTNGTLLD-EELLDELKKLGVD 102 (166)
T ss_dssp CHHHHHHHHHHHCTCTTEEEEEEEESTTHC-HHHHHHHHHTTCS
T ss_pred hhHHHHHHHHHHhhccccceeeeccccchh-HHHHHHHHhcCcc
Confidence 4455556666654 99999999987433 7788999999943
No 407
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=26.20 E-value=2.3e+02 Score=26.57 Aligned_cols=53 Identities=17% Similarity=0.256 Sum_probs=36.4
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCc------------------cc----------HHHHHHHHHhcCCCCcceEEEeC
Q 036571 143 SLPESLKLYKKLLSLGIKIVFLTGRPE------------------DQ----------RSVTENNLKNVGFYTWENLILKG 194 (251)
Q Consensus 143 ~~pga~ell~~L~~~G~~I~~vTnR~e------------------~~----------r~~T~~~L~~~G~~~~~~lilr~ 194 (251)
.+....+.+..|+++|++|++||+..- +| -....+.|..+|+.. .+++|+.
T Consensus 29 ~l~~l~~~ia~L~~~G~eVilVSSGAiaaG~~~Lg~~~rp~~l~~kQA~AAVGQ~~Lm~~y~~~f~~~g~~v-~QiLLTr 107 (369)
T COG0263 29 KLEELVRQVAALHKAGHEVVLVSSGAIAAGRTRLGLPKRPKTLAEKQAAAAVGQVRLMQLYEELFARYGIKV-GQILLTR 107 (369)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEccchhhhChhhcCCCCCCcchHHHHHHHHhCHHHHHHHHHHHHHhcCCee-eEEEeeh
Confidence 345667778899999999999998641 01 123346677778765 5777776
Q ss_pred CC
Q 036571 195 SS 196 (251)
Q Consensus 195 ~~ 196 (251)
++
T Consensus 108 ~D 109 (369)
T COG0263 108 DD 109 (369)
T ss_pred hh
Confidence 65
No 408
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=26.10 E-value=2.3e+02 Score=22.11 Aligned_cols=74 Identities=14% Similarity=0.190 Sum_probs=29.5
Q ss_pred HHHHHHCCCeEEEEeCCCc-----ccHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCccEEEEEc
Q 036571 151 YKKLLSLGIKIVFLTGRPE-----DQRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRIIGNIG 225 (251)
Q Consensus 151 l~~L~~~G~~I~~vTnR~e-----~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i~~~VG 225 (251)
++.+++.-.+.+++||... ...+...+.|.+.|++. ..+++-+.. ....+--...+.-+.+.|.+-++.|-
T Consensus 30 ~~L~~~g~~~~il~SGg~~~~~~~~ea~~~~~~l~~~gvp~-~~I~~e~~s---~~T~ena~~~~~~~~~~~~~~iilVT 105 (155)
T PF02698_consen 30 ARLYKAGYAPRILFSGGYGHGDGRSEAEAMRDYLIELGVPE-ERIILEPKS---TNTYENARFSKRLLKERGWQSIILVT 105 (155)
T ss_dssp HHHHH-HHT--EEEE--SSTTHTS-HHHHHHHHHHHT---G-GGEEEE-------SHHHHHHHHHHHHHT-SSS-EEEE-
T ss_pred HHHHhcCCCCeEEECCCCCCCCCCCHHHHHHHHHHhcccch-heeEccCCC---CCHHHHHHHHHHHHHhhcCCeEEEEC
Confidence 3334443356688888432 23566677888889986 566653322 11111111223344455666566666
Q ss_pred CCc
Q 036571 226 DQW 228 (251)
Q Consensus 226 Dq~ 228 (251)
+..
T Consensus 106 ~~~ 108 (155)
T PF02698_consen 106 SPY 108 (155)
T ss_dssp -CC
T ss_pred CHH
Confidence 654
No 409
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=26.10 E-value=4.5e+02 Score=24.24 Aligned_cols=79 Identities=15% Similarity=0.136 Sum_probs=43.5
Q ss_pred HHHHHHHCCCeEEEEeCCCc----ccHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCccEEEEEc
Q 036571 150 LYKKLLSLGIKIVFLTGRPE----DQRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRIIGNIG 225 (251)
Q Consensus 150 ll~~L~~~G~~I~~vTnR~e----~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i~~~VG 225 (251)
+-+.+++.|-++++||++.. ...+...+.|++.|+.. . ++.+ ..+.|...--......+++.+.+.++.||
T Consensus 17 l~~~~~~~g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~--~-~~~~--v~~~p~~~~v~~~~~~~~~~~~D~IiavG 91 (380)
T cd08185 17 LGEEALKPGKKALIVTGNGSSKKTGYLDRVIELLKQAGVEV--V-VFDK--VEPNPTTTTVMEGAALAREEGCDFVVGLG 91 (380)
T ss_pred HHHHHHhcCCeEEEEeCCCchhhccHHHHHHHHHHHcCCeE--E-EeCC--ccCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 34455666789999998753 13466778888888853 1 2221 11222111111222344456777777788
Q ss_pred C-Ccccccc
Q 036571 226 D-QWSDLLG 233 (251)
Q Consensus 226 D-q~sDi~g 233 (251)
- +.-|...
T Consensus 92 GGS~iD~aK 100 (380)
T cd08185 92 GGSSMDTAK 100 (380)
T ss_pred CccHHHHHH
Confidence 7 3356543
No 410
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=25.98 E-value=1.2e+02 Score=22.42 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=28.3
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCC
Q 036571 147 SLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFY 185 (251)
Q Consensus 147 a~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~ 185 (251)
+..+.++|+++|++++.=+-.. -+...+-++++|+.
T Consensus 41 ~~~~~~~L~~~g~P~Y~hv~~~---N~~~~r~~~~lg~~ 76 (89)
T PF08444_consen 41 MYHLAQYLHKLGFPFYGHVDED---NEASQRLSKSLGFI 76 (89)
T ss_pred HHHHHHHHHHCCCCeEeehHhc---cHHHHHHHHHCCCe
Confidence 5667889999999999877766 55667777888875
No 411
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=25.91 E-value=1e+02 Score=20.82 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHCCCeEEEEeCCC
Q 036571 145 PESLKLYKKLLSLGIKIVFLTGRP 168 (251)
Q Consensus 145 pga~ell~~L~~~G~~I~~vTnR~ 168 (251)
|.-.+-|+.|.+.|++|-++|-..
T Consensus 2 ~~~qegLr~L~~aG~~v~iM~~~e 25 (55)
T PF05240_consen 2 PDYQEGLRRLCQAGAQVSIMTYSE 25 (55)
T ss_dssp HHHHHHHHHHHHTT-EEEE--HHH
T ss_pred cHHHHHHHHHHHCCCeEEecCcHH
Confidence 456788999999999999998643
No 412
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=25.89 E-value=91 Score=23.90 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=19.1
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCcc
Q 036571 147 SLKLYKKLLSLGIKIVFLTGRPED 170 (251)
Q Consensus 147 a~ell~~L~~~G~~I~~vTnR~e~ 170 (251)
+.++.+.|.++|+++.++|.+...
T Consensus 18 ~~~l~~~l~~~G~~v~v~~~~~~~ 41 (177)
T PF13439_consen 18 VLNLARALAKRGHEVTVVSPGVKD 41 (177)
T ss_dssp HHHHHHHHHHTT-EEEEEESS-TT
T ss_pred HHHHHHHHHHCCCEEEEEEcCCCc
Confidence 678899999999999999988643
No 413
>PRK15482 transcriptional regulator MurR; Provisional
Probab=25.50 E-value=96 Score=27.36 Aligned_cols=30 Identities=13% Similarity=0.108 Sum_probs=25.6
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCcc
Q 036571 141 APSLPESLKLYKKLLSLGIKIVFLTGRPED 170 (251)
Q Consensus 141 ~~~~pga~ell~~L~~~G~~I~~vTnR~e~ 170 (251)
..--+.+.++++.++++|.+++.+|+....
T Consensus 192 sg~t~~~~~~~~~a~~~g~~iI~IT~~~~s 221 (285)
T PRK15482 192 SGSKKEIVLCAEAARKQGATVIAITSLADS 221 (285)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 344688999999999999999999998743
No 414
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=25.35 E-value=4.8e+02 Score=24.01 Aligned_cols=79 Identities=14% Similarity=0.136 Sum_probs=43.4
Q ss_pred HHHHHHHCC-CeEEEEeCCCcc---cHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCccEEEEEc
Q 036571 150 LYKKLLSLG-IKIVFLTGRPED---QRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRIIGNIG 225 (251)
Q Consensus 150 ll~~L~~~G-~~I~~vTnR~e~---~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i~~~VG 225 (251)
+-+.+++.| -+++++|++.-. ..+...+.|+..|+.. . ++. +..+.|....-......+.+.+.+.++.||
T Consensus 17 l~~~l~~~g~~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~--~-~~~--~v~~~p~~~~v~~~~~~~~~~~~d~IIaiG 91 (374)
T cd08189 17 LPAAISQLGVKKVLIVTDKGLVKLGLLDKVLEALEGAGIEY--A-VYD--GVPPDPTIENVEAGLALYRENGCDAILAVG 91 (374)
T ss_pred HHHHHHhcCCCeEEEEeCcchhhcccHHHHHHHHHhcCCeE--E-EeC--CCCCCcCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 345566667 589999987532 2356677888888742 1 221 112222111112233444456778788788
Q ss_pred C-Ccccccc
Q 036571 226 D-QWSDLLG 233 (251)
Q Consensus 226 D-q~sDi~g 233 (251)
- +.-|...
T Consensus 92 GGS~~D~aK 100 (374)
T cd08189 92 GGSVIDCAK 100 (374)
T ss_pred CccHHHHHH
Confidence 7 4466654
No 415
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=25.11 E-value=1.6e+02 Score=23.61 Aligned_cols=24 Identities=29% Similarity=0.348 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHCCCeEEEEeCCC
Q 036571 145 PESLKLYKKLLSLGIKIVFLTGRP 168 (251)
Q Consensus 145 pga~ell~~L~~~G~~I~~vTnR~ 168 (251)
+.+.++++.+++.|+++.+-||..
T Consensus 75 ~~l~~ll~~lk~~Gl~i~l~Tg~~ 98 (147)
T TIGR02826 75 EALLSLLKIFKEKGLKTCLYTGLE 98 (147)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCC
Confidence 568899999999999999999965
No 416
>PRK00942 acetylglutamate kinase; Provisional
Probab=25.01 E-value=4.3e+02 Score=23.30 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhhhcCCCCcEEEEecCCCccCC
Q 036571 81 VAYEAIVYAQSLELAGDGREIWIFDIDETSLSN 113 (251)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~avvfDIDgTlldn 113 (251)
...++..|.+... .+.+|+=+.|+++.+
T Consensus 10 ~~r~~~~yi~~~~-----~~~iViK~GGs~l~~ 37 (283)
T PRK00942 10 VLSEALPYIQRFM-----GKTIVIKYGGNAMTD 37 (283)
T ss_pred HHHHHHHHHHHHc-----CCeEEEEEChHHhcC
Confidence 3445666665554 457888899999865
No 417
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=24.84 E-value=97 Score=26.78 Aligned_cols=27 Identities=37% Similarity=0.423 Sum_probs=23.8
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCC
Q 036571 142 PSLPESLKLYKKLLSLGIKIVFLTGRP 168 (251)
Q Consensus 142 ~~~pga~ell~~L~~~G~~I~~vTnR~ 168 (251)
---+.+.+.++.++++|.+++.+|+..
T Consensus 58 G~t~~~~~~~~~a~~~g~~ii~iT~~~ 84 (268)
T TIGR00393 58 GESLELLNLIPHLKRLSHKIIAFTGSP 84 (268)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEEECCC
Confidence 355788999999999999999999975
No 418
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=24.74 E-value=1e+02 Score=27.10 Aligned_cols=28 Identities=14% Similarity=0.124 Sum_probs=24.8
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCcc
Q 036571 143 SLPESLKLYKKLLSLGIKIVFLTGRPED 170 (251)
Q Consensus 143 ~~pga~ell~~L~~~G~~I~~vTnR~e~ 170 (251)
--|.+.+.++.++++|.+++.+|+.+..
T Consensus 130 ~T~~vi~al~~Ak~~Ga~~I~It~~~~s 157 (257)
T cd05007 130 RTPYVLGALRYARARGALTIGIACNPGS 157 (257)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 4588999999999999999999998854
No 419
>smart00463 SMR Small MutS-related domain.
Probab=24.74 E-value=1.6e+02 Score=20.49 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=22.5
Q ss_pred CCchHHHHHHHHHHHCCC--eEEEEeCCCc
Q 036571 142 PSLPESLKLYKKLLSLGI--KIVFLTGRPE 169 (251)
Q Consensus 142 ~~~pga~ell~~L~~~G~--~I~~vTnR~e 169 (251)
.++.-+.++|+.+++.|. .+.++||+-.
T Consensus 13 eA~~~l~~~l~~~~~~~~~~~~~II~G~G~ 42 (80)
T smart00463 13 EALTALDKFLNNARLKGLEQKLVIITGKGK 42 (80)
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEEEcccC
Confidence 456667888999999996 7889999864
No 420
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=24.56 E-value=2.4e+02 Score=23.38 Aligned_cols=63 Identities=14% Similarity=0.208 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHhhhhcCC-CCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHH
Q 036571 78 SEAVAYEAIVYAQSLELAGD-GREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLS 156 (251)
Q Consensus 78 ~~~~~~~a~~~~~~~~~~~~-~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~ 156 (251)
......||..+.+.++..+- ....+++|+...-.. ......+..|++++++
T Consensus 69 ~~~a~~eA~~f~~~~~~~~~~~~~~~~lD~E~~~~~----------------------------~~~~~~~~~F~~~v~~ 120 (192)
T cd06522 69 AADAQAEARYFANTAKSLGLSKNTVMVADMEDSSSS----------------------------GNATANVNAFWQTMKA 120 (192)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCCCceEEEeecCCCc----------------------------chHHHHHHHHHHHHHH
Confidence 34456777777776653322 223577999873210 1223456789999999
Q ss_pred CCC-eEEEEeCCC
Q 036571 157 LGI-KIVFLTGRP 168 (251)
Q Consensus 157 ~G~-~I~~vTnR~ 168 (251)
+|+ ++++=|++.
T Consensus 121 ~g~~~~~iY~~~~ 133 (192)
T cd06522 121 AGYKNTDVYTSAS 133 (192)
T ss_pred cCCCCcEEEccHH
Confidence 998 777777765
No 421
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=24.35 E-value=1.3e+02 Score=22.73 Aligned_cols=69 Identities=13% Similarity=0.171 Sum_probs=47.8
Q ss_pred ccchhhHhhHHHHHHHHHHHHHhhhhcCCCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHH
Q 036571 69 MLGQQYREDSEAVAYEAIVYAQSLELAGDGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESL 148 (251)
Q Consensus 69 ~~~~~Y~~d~~~~~~~a~~~~~~~~~~~~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ 148 (251)
|.|.-|-.|..+.......+.+.+... ..+.+.|++.=+=++++ ..+.+-.+.
T Consensus 14 i~GeSypEn~~~Fy~Pi~~wl~~Yl~~--~~~~i~~~~~L~YfNTS-------------------------Ssk~l~~i~ 66 (99)
T PF09345_consen 14 ISGESYPENAFAFYQPILDWLEAYLAE--PNKPITFNFKLSYFNTS-------------------------SSKALMDIF 66 (99)
T ss_pred EecccCccCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEEEEEecH-------------------------hHHHHHHHH
Confidence 567778888888888888888876544 23455555532222321 356777888
Q ss_pred HHHHHHHHCCCeEEEE
Q 036571 149 KLYKKLLSLGIKIVFL 164 (251)
Q Consensus 149 ell~~L~~~G~~I~~v 164 (251)
++|+.+.++|.+|.+.
T Consensus 67 ~~Le~~~~~g~~V~v~ 82 (99)
T PF09345_consen 67 DLLEDAAQKGGKVTVN 82 (99)
T ss_pred HHHHHHHhcCCcEEEE
Confidence 9999999999888754
No 422
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=24.15 E-value=2.2e+02 Score=26.92 Aligned_cols=86 Identities=23% Similarity=0.217 Sum_probs=49.0
Q ss_pred HHHHHHHHHCC-Ce-EEEEeCCCcccHHHHHHHHHhcCCCC--cceEEEeCCCCCCCccccchHHHHHHHHhcCccEEEE
Q 036571 148 LKLYKKLLSLG-IK-IVFLTGRPEDQRSVTENNLKNVGFYT--WENLILKGSSYSGETAVVYKSSERKRLEKKGYRIIGN 223 (251)
Q Consensus 148 ~ell~~L~~~G-~~-I~~vTnR~e~~r~~T~~~L~~~G~~~--~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i~~~ 223 (251)
.-+++++++.+ +. ++++||-.- ..+....-|..+++.. |+=-++.+.....+....--.+.-.-+.+.....+++
T Consensus 20 apli~~~~~~~~~~~~vi~TGQH~-d~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~~i~~~~~vl~~~kPD~VlV 98 (383)
T COG0381 20 APLVKALEKDPDFELIVIHTGQHR-DYEMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGNIIEGLSKVLEEEKPDLVLV 98 (383)
T ss_pred hHHHHHHHhCCCCceEEEEecccc-cHHHHHHHHHHhCCCCCCcchhccccCCCHHHHHHHHHHHHHHHHHhhCCCEEEE
Confidence 44677888876 54 557787651 1267777788888873 2222332222111111111223333344566789999
Q ss_pred EcCCccccccc
Q 036571 224 IGDQWSDLLGT 234 (251)
Q Consensus 224 VGDq~sDi~ga 234 (251)
-||+.+=+.|+
T Consensus 99 hGDT~t~lA~a 109 (383)
T COG0381 99 HGDTNTTLAGA 109 (383)
T ss_pred eCCcchHHHHH
Confidence 99999988876
No 423
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=24.11 E-value=1.1e+02 Score=22.78 Aligned_cols=34 Identities=35% Similarity=0.528 Sum_probs=25.0
Q ss_pred chHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCC
Q 036571 144 LPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFY 185 (251)
Q Consensus 144 ~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~ 185 (251)
.+...++.+.|.+.|++++ .|. .|.+.|++.|++
T Consensus 12 k~~~~~~~~~l~~~G~~l~-aT~-------gT~~~l~~~gi~ 45 (110)
T cd01424 12 KPEAVEIAKRLAELGFKLV-ATE-------GTAKYLQEAGIP 45 (110)
T ss_pred HhHHHHHHHHHHHCCCEEE-Ech-------HHHHHHHHcCCe
Confidence 3567788888889999885 443 356778888886
No 424
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=24.00 E-value=4e+02 Score=21.68 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=27.8
Q ss_pred chHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhc
Q 036571 144 LPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNV 182 (251)
Q Consensus 144 ~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~ 182 (251)
..=+.++++.+.++|.+|+++-++++. -+.+.++|++.
T Consensus 32 ~dl~~~ll~~~~~~~~~v~llG~~~~~-~~~~~~~l~~~ 69 (171)
T cd06533 32 SDLMPALLELAAQKGLRVFLLGAKPEV-LEKAAERLRAR 69 (171)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCCHHH-HHHHHHHHHHH
Confidence 344668888899999999999777654 55556677663
No 425
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=23.94 E-value=74 Score=20.83 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=21.6
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHH
Q 036571 131 LFNEWVNKGEAPSLPESLKLYKKLLS 156 (251)
Q Consensus 131 ~~~~wv~~~~~~~~pga~ell~~L~~ 156 (251)
.|++|+.-+.-|.-..+.+.++.+-.
T Consensus 19 dWd~wvSf~GrPltdevK~a~k~i~~ 44 (49)
T PF06543_consen 19 DWDKWVSFDGRPLTDEVKEAMKLIFG 44 (49)
T ss_pred chHHheeeCCeeCCHHHHHHHHHHHh
Confidence 39999999888888889988887654
No 426
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=23.85 E-value=1e+02 Score=27.76 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=24.3
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCC
Q 036571 142 PSLPESLKLYKKLLSLGIKIVFLTGRP 168 (251)
Q Consensus 142 ~~~pga~ell~~L~~~G~~I~~vTnR~ 168 (251)
.--+.+.+.++.++++|.+++.+|+.+
T Consensus 105 G~t~~~~~~~~~ak~~g~~vi~iT~~~ 131 (326)
T PRK10892 105 GESSEILALIPVLKRLHVPLICITGRP 131 (326)
T ss_pred CCCHHHHHHHHHHHHCCCcEEEEECCC
Confidence 446889999999999999999999986
No 427
>cd06417 GH25_LysA-like LysA is a cell wall endolysin produced by Lactobacillus fermentum, which degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. The N-terminal glycosyl hydrolase family 25 (GH25) domain of LysA has sequence similarity with other murein hydrolase catalytic domains while the C-terminal domain has sequence similarity with putative bacterial cell wall-binding SH3b domains. This domain family also includes LysL of Lactococcus lactis.
Probab=23.80 E-value=2e+02 Score=23.86 Aligned_cols=60 Identities=10% Similarity=0.096 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhhhcCCCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHH-CCC
Q 036571 81 VAYEAIVYAQSLELAGDGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLS-LGI 159 (251)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~-~G~ 159 (251)
...||..+.+.++... +...+++|+++.-... ......+.+|++++++ .|+
T Consensus 63 a~~qA~~f~~~~~~~~-~~~~~~lD~E~~~~~~---------------------------~~~~~~~~~f~~~v~~~~G~ 114 (195)
T cd06417 63 AIAEADYFLNNIKGYV-GKAVLVLDWESYQNSA---------------------------WGNSAWARQWVNRVHELTGV 114 (195)
T ss_pred HHHHHHHHHHHhcccc-CCCcEEEEeeCCCCCc---------------------------hHHHHHHHHHHHHHHHHHCC
Confidence 5678888877765432 2346789998843211 0112457889999986 699
Q ss_pred eEEEEeCCC
Q 036571 160 KIVFLTGRP 168 (251)
Q Consensus 160 ~I~~vTnR~ 168 (251)
+++|=|++.
T Consensus 115 ~~~iY~~~~ 123 (195)
T cd06417 115 WPMVYVSKS 123 (195)
T ss_pred CcEEEecHH
Confidence 999999875
No 428
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.
Probab=23.76 E-value=1.1e+02 Score=24.15 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=24.3
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCc
Q 036571 141 APSLPESLKLYKKLLSLGIKIVFLTGRPE 169 (251)
Q Consensus 141 ~~~~pga~ell~~L~~~G~~I~~vTnR~e 169 (251)
...++.+.++++..+++|+.|+++.-...
T Consensus 23 ~~~~~~i~~l~~~ar~~~~~vi~~~~~~~ 51 (161)
T cd00431 23 DELVPNINRLLAAARAAGIPVIFTRDWHP 51 (161)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEEeeec
Confidence 45678899999999999999998887553
No 429
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=23.65 E-value=84 Score=27.23 Aligned_cols=25 Identities=12% Similarity=-0.055 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHCCCeEEEEeCCCc
Q 036571 145 PESLKLYKKLLSLGIKIVFLTGRPE 169 (251)
Q Consensus 145 pga~ell~~L~~~G~~I~~vTnR~e 169 (251)
+...++++.+++.|+++.+.||-.-
T Consensus 87 ~~l~~li~~l~~~g~~v~leTNGtl 111 (238)
T TIGR03365 87 KPLGELIDLGKAKGYRFALETQGSV 111 (238)
T ss_pred HhHHHHHHHHHHCCCCEEEECCCCC
Confidence 6789999999999999999999973
No 430
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=23.62 E-value=5.1e+02 Score=22.82 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=11.2
Q ss_pred chHHHHHHHHHHH-CCCe-EEEEeCCC
Q 036571 144 LPESLKLYKKLLS-LGIK-IVFLTGRP 168 (251)
Q Consensus 144 ~pga~ell~~L~~-~G~~-I~~vTnR~ 168 (251)
...++++...|++ .|+. |.-+|.|.
T Consensus 43 ~~~t~~~a~~l~~~~g~~~i~Hlt~r~ 69 (272)
T TIGR00676 43 RDRTVRIVRRIKKETGIPTVPHLTCIG 69 (272)
T ss_pred HHHHHHHHHHHHHhcCCCeeEEeeecC
Confidence 3344555555552 2544 33444444
No 431
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=23.32 E-value=8.2e+02 Score=25.11 Aligned_cols=79 Identities=13% Similarity=0.093 Sum_probs=51.1
Q ss_pred chHHHHHHHHHHHCCCeEEEEeCCCccc---HHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCccE
Q 036571 144 LPESLKLYKKLLSLGIKIVFLTGRPEDQ---RSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRI 220 (251)
Q Consensus 144 ~pga~ell~~L~~~G~~I~~vTnR~e~~---r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i 220 (251)
+....++.+..++.|..|+++|+....+ -..+.+.|+..|.+. ..+++.+... + .....+.+.|..-
T Consensus 619 ~~s~e~~v~aa~~~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~G~~~-v~vl~GG~~~--------~-~~~~~l~~aGvD~ 688 (714)
T PRK09426 619 FQTPEEAARQAVENDVHVVGVSSLAAGHKTLVPALIEALKKLGRED-IMVVVGGVIP--------P-QDYDFLYEAGVAA 688 (714)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeccchhhHHHHHHHHHHHHhcCCCC-cEEEEeCCCC--------h-hhHHHHHhCCCCE
Confidence 4456688888889999999999877543 456778888888542 2345543210 1 1124456678887
Q ss_pred EEEEcCCccccc
Q 036571 221 IGNIGDQWSDLL 232 (251)
Q Consensus 221 ~~~VGDq~sDi~ 232 (251)
++..|.+..++.
T Consensus 689 ~i~~g~d~~~~L 700 (714)
T PRK09426 689 IFGPGTVIADAA 700 (714)
T ss_pred EECCCCCHHHHH
Confidence 788887765543
No 432
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=23.32 E-value=5.5e+02 Score=23.27 Aligned_cols=85 Identities=19% Similarity=0.233 Sum_probs=45.2
Q ss_pred CCeEEEEeCCCcc--cHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCc---cEEEEEcCCc-ccc
Q 036571 158 GIKIVFLTGRPED--QRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGY---RIIGNIGDQW-SDL 231 (251)
Q Consensus 158 G~~I~~vTnR~e~--~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~---~i~~~VGDq~-sDi 231 (251)
+-+++++|+..-. ..+...+.|++.|+.. ...++.+ ....++ ...-......+.+.+. ..++.||-.. .|+
T Consensus 20 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~~-~~~~~~~-~e~~~~-~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~ 96 (344)
T TIGR01357 20 PSKLVIITDETVADLYADKLLEALQALGYNV-LKLTVPD-GEESKS-LETVQRLYDQLLEAGLDRSSTIIALGGGVVGDL 96 (344)
T ss_pred CCeEEEEECCchHHHHHHHHHHHHHhcCCce-eEEEeCC-CCCCCC-HHHHHHHHHHHHHcCCCCCCEEEEEcChHHHHH
Confidence 5789999987532 2445566788888754 2223322 222111 1111223334444444 5677787754 788
Q ss_pred cccc-----ccCcEEEeCC
Q 036571 232 LGTN-----AGNRTFKLPD 245 (251)
Q Consensus 232 ~ga~-----~g~r~f~lPn 245 (251)
.+.- .|.+.+.+|-
T Consensus 97 aK~iA~~~~~~~p~i~VPT 115 (344)
T TIGR01357 97 AGFVAATYMRGIRFIQVPT 115 (344)
T ss_pred HHHHHHHHccCCCEEEecC
Confidence 7653 2456666663
No 433
>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination but this awaits experimental verification.; PDB: 3OBY_A 3E1Y_D 1DT9_A 2KTU_A 2KTV_A 3IR9_A 3E20_H 3OBW_A 3AGJ_F 3MCA_B ....
Probab=23.25 E-value=2e+02 Score=21.95 Aligned_cols=24 Identities=17% Similarity=0.129 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHCCCeEEEEeCCCc
Q 036571 146 ESLKLYKKLLSLGIKIVFLTGRPE 169 (251)
Q Consensus 146 ga~ell~~L~~~G~~I~~vTnR~e 169 (251)
-+.++++..++.|.+|.++|+.++
T Consensus 70 ~i~~l~~~a~~~g~~v~iis~~~e 93 (113)
T PF03465_consen 70 LIEELIELAEQSGAKVEIISSEHE 93 (113)
T ss_dssp HHHHHHHHHHHTTSEEEEE-TTSH
T ss_pred HHHHHHHHHHHcCCEEEEEcCCCc
Confidence 378899999999999999999974
No 434
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=23.22 E-value=5.2e+02 Score=23.83 Aligned_cols=79 Identities=19% Similarity=0.225 Sum_probs=43.9
Q ss_pred HHHHHHHHCC-CeEEEEeCCCc---ccHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCccEEEEE
Q 036571 149 KLYKKLLSLG-IKIVFLTGRPE---DQRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRIIGNI 224 (251)
Q Consensus 149 ell~~L~~~G-~~I~~vTnR~e---~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i~~~V 224 (251)
++-+.+++.| -+++++|++.- ...+...+.|+..|+.. .++.+- .+.|...--......+.+.+.+.++.|
T Consensus 18 ~l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~---~~f~~v--~~~p~~~~v~~~~~~~~~~~~D~IIav 92 (377)
T cd08176 18 EIGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDY---VIYDGV--KPNPTITNVKDGLAVFKKEGCDFIISI 92 (377)
T ss_pred HHHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCeE---EEeCCC--CCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 3445667767 47888988753 23567788998888752 222221 111111111233344555677877878
Q ss_pred cCC-ccccc
Q 036571 225 GDQ-WSDLL 232 (251)
Q Consensus 225 GDq-~sDi~ 232 (251)
|-. .-|+.
T Consensus 93 GGGS~iD~a 101 (377)
T cd08176 93 GGGSPHDCA 101 (377)
T ss_pred CCcHHHHHH
Confidence 874 35543
No 435
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=22.92 E-value=2.3e+02 Score=25.22 Aligned_cols=51 Identities=22% Similarity=0.399 Sum_probs=36.5
Q ss_pred CCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCC
Q 036571 139 GEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGS 195 (251)
Q Consensus 139 ~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~ 195 (251)
+..+..||-...=+.|.+.|++.+++|..+... ..+.|+..||- .+++..+
T Consensus 67 sPN~~~PGP~~ARE~l~~~~iP~IvI~D~p~~k---~kd~l~~~g~G---YIivk~D 117 (276)
T PF01993_consen 67 SPNAAAPGPTKAREMLSAKGIPCIVISDAPTKK---AKDALEEEGFG---YIIVKAD 117 (276)
T ss_dssp -S-TTSHHHHHHHHHHHHSSS-EEEEEEGGGGG---GHHHHHHTT-E---EEEETTS
T ss_pred CCCCCCCCcHHHHHHHHhCCCCEEEEcCCCchh---hHHHHHhcCCc---EEEEecC
Confidence 557788988888888999999999999988542 25789999983 3566554
No 436
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=22.91 E-value=1.1e+02 Score=27.32 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=24.5
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCCc
Q 036571 142 PSLPESLKLYKKLLSLGIKIVFLTGRPE 169 (251)
Q Consensus 142 ~~~pga~ell~~L~~~G~~I~~vTnR~e 169 (251)
.--+.+++.++.++++|.+++.+|+...
T Consensus 100 G~t~~~~~~~~~ak~~g~~vI~iT~~~~ 127 (321)
T PRK11543 100 GGAKELDLIIPRLEDKSIALLAMTGKPT 127 (321)
T ss_pred CCcHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 3457899999999999999999999763
No 437
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=22.88 E-value=4e+02 Score=24.88 Aligned_cols=83 Identities=17% Similarity=0.167 Sum_probs=48.6
Q ss_pred chHHHHHHHHHHHCCCeEEEEeCCC-----------ccc----------------HHHHHHHHHhcCCCCcceEEEeCCC
Q 036571 144 LPESLKLYKKLLSLGIKIVFLTGRP-----------EDQ----------------RSVTENNLKNVGFYTWENLILKGSS 196 (251)
Q Consensus 144 ~pga~ell~~L~~~G~~I~~vTnR~-----------e~~----------------r~~T~~~L~~~G~~~~~~lilr~~~ 196 (251)
+....+.+..|+++|+++++||+-. ... -......|.++|++. .+++++.++
T Consensus 29 i~~la~~I~~l~~~G~~vvlVsSGava~G~~~l~~~~~~~~~~~qalaavGq~~l~~~~~~~f~~~g~~~-aqvLlT~~d 107 (368)
T PRK13402 29 LLGLVQQIVYLKDQGHQVVLVSSGAVAAGYHKLGFIDRPSVPEKQAMAAAGQGLLMATWSKLFLSHGFPA-AQLLLTHGD 107 (368)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCChhhcCccccCCCCCCCccHHHHHHHhhHHHHHHHHHHHHHHCCCeE-EEEEEecch
Confidence 4456677888999999999999842 000 023356677788876 466666654
Q ss_pred CCCCccccch--HHHHHHHHhcCccEEEEEcCCcc
Q 036571 197 YSGETAVVYK--SSERKRLEKKGYRIIGNIGDQWS 229 (251)
Q Consensus 197 ~~~kp~~~~K--~~~r~~L~~~g~~i~~~VGDq~s 229 (251)
.... ..|. ......+-+.|+-++++=||..+
T Consensus 108 ~~~~--~~y~n~~~~l~~LL~~g~IPIinenD~v~ 140 (368)
T PRK13402 108 LRDR--ERYINIRNTINVLLERGILPIINENDAVT 140 (368)
T ss_pred hhhH--HHHHHHHHHHHHHHHCCcEEEEeCCCcEe
Confidence 2111 1232 12333444567766766555543
No 438
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=22.86 E-value=80 Score=26.13 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=22.9
Q ss_pred HHHHHHHhcCc--cEEEEEcCCccccccccccCcEEEeCC
Q 036571 208 SERKRLEKKGY--RIIGNIGDQWSDLLGTNAGNRTFKLPD 245 (251)
Q Consensus 208 ~~r~~L~~~g~--~i~~~VGDq~sDi~ga~~g~r~f~lPn 245 (251)
+++.-++..|. ..++.|||+.+|+.--......|..-|
T Consensus 190 ai~~l~~~~~i~~~~~~~~GD~~ND~~Ml~~~~~~~am~n 229 (254)
T PF08282_consen 190 AIKYLLEYLGISPEDIIAFGDSENDIEMLELAGYSVAMGN 229 (254)
T ss_dssp HHHHHHHHHTTSGGGEEEEESSGGGHHHHHHSSEEEEETT
T ss_pred HHHHHhhhcccccceeEEeecccccHhHHhhcCeEEEEcC
Confidence 44443444454 568999999999965543344444433
No 439
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=22.79 E-value=6.3e+02 Score=23.73 Aligned_cols=77 Identities=14% Similarity=0.110 Sum_probs=40.8
Q ss_pred HHHHHHHCC-CeEEEEeCCCcc---cHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCccEEEEEc
Q 036571 150 LYKKLLSLG-IKIVFLTGRPED---QRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRIIGNIG 225 (251)
Q Consensus 150 ll~~L~~~G-~~I~~vTnR~e~---~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i~~~VG 225 (251)
+-+.+++.| -+++++|++.-. ..+...+.|++.|+.. . ++.. ..+.|...--....+...+.+...++.||
T Consensus 14 l~~~l~~~g~~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~--~-~f~~--v~~~p~~~~v~~~~~~~~~~~~D~IIaiG 88 (414)
T cd08190 14 VGMDLKNLGARRVCLVTDPNLAQLPPVKVVLDSLEAAGINF--E-VYDD--VRVEPTDESFKDAIAFAKKGQFDAFVAVG 88 (414)
T ss_pred HHHHHHHcCCCeEEEEECcchhhcchHHHHHHHHHHcCCcE--E-EeCC--CCCCcCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 345566667 588899988632 2466777888888753 2 2221 11122111111222334456677777776
Q ss_pred CC-cccc
Q 036571 226 DQ-WSDL 231 (251)
Q Consensus 226 Dq-~sDi 231 (251)
=. .-|.
T Consensus 89 GGSviD~ 95 (414)
T cd08190 89 GGSVIDT 95 (414)
T ss_pred CccHHHH
Confidence 43 3454
No 440
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=22.68 E-value=1.2e+02 Score=27.45 Aligned_cols=28 Identities=11% Similarity=0.092 Sum_probs=24.8
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCcc
Q 036571 143 SLPESLKLYKKLLSLGIKIVFLTGRPED 170 (251)
Q Consensus 143 ~~pga~ell~~L~~~G~~I~~vTnR~e~ 170 (251)
--|.+++.++.++++|.+++.+|+.+..
T Consensus 143 ~T~~vi~al~~Ak~~Ga~tI~IT~~~~s 170 (299)
T PRK05441 143 RTPYVIGALEYARERGALTIGISCNPGS 170 (299)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 3588999999999999999999998754
No 441
>PLN02834 3-dehydroquinate synthase
Probab=22.67 E-value=5.7e+02 Score=24.38 Aligned_cols=87 Identities=14% Similarity=0.116 Sum_probs=48.9
Q ss_pred CCCeEEEEeCCCcc--cHHHHHHHHHhcCCCCc-ceEEEeCCCCCCCccccchHHHHHHHHhcCcc---EEEEEcCCc-c
Q 036571 157 LGIKIVFLTGRPED--QRSVTENNLKNVGFYTW-ENLILKGSSYSGETAVVYKSSERKRLEKKGYR---IIGNIGDQW-S 229 (251)
Q Consensus 157 ~G~~I~~vTnR~e~--~r~~T~~~L~~~G~~~~-~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~---i~~~VGDq~-s 229 (251)
.|-++++||++.-. ..+...+.|+..|+... +..++. +.+..|+ ..--......+.+.|.+ .++.||-.. .
T Consensus 99 ~g~rvlIVtD~~v~~~~~~~v~~~L~~~g~~~~v~~~v~~-~gE~~ks-l~~v~~~~~~l~~~~~dr~~~VIAiGGGsv~ 176 (433)
T PLN02834 99 HGKRVLVVTNETVAPLYLEKVVEALTAKGPELTVESVILP-DGEKYKD-METLMKVFDKALESRLDRRCTFVALGGGVIG 176 (433)
T ss_pred CCCEEEEEECccHHHHHHHHHHHHHHhcCCceEEEEEEec-CCcCCCC-HHHHHHHHHHHHhcCCCcCcEEEEECChHHH
Confidence 46789999987522 34556677888887531 222333 2222232 11122333445455554 777788754 8
Q ss_pred ccccc-----cccCcEEEeCC
Q 036571 230 DLLGT-----NAGNRTFKLPD 245 (251)
Q Consensus 230 Di~ga-----~~g~r~f~lPn 245 (251)
|+.+. ..|.+.+.+|-
T Consensus 177 D~ak~~A~~y~rgiplI~VPT 197 (433)
T PLN02834 177 DMCGFAAASYQRGVNFVQIPT 197 (433)
T ss_pred HHHHHHHHHhcCCCCEEEECC
Confidence 98874 23667777764
No 442
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=22.65 E-value=1.8e+02 Score=22.02 Aligned_cols=42 Identities=29% Similarity=0.413 Sum_probs=31.4
Q ss_pred CchHHHHHHHHHHHCC---CeEEEEeCCCc-ccHHHHHHHHHhcCC
Q 036571 143 SLPESLKLYKKLLSLG---IKIVFLTGRPE-DQRSVTENNLKNVGF 184 (251)
Q Consensus 143 ~~pga~ell~~L~~~G---~~I~~vTnR~e-~~r~~T~~~L~~~G~ 184 (251)
.++...++.+.++++| ++++.||.-++ ...+...+.++.+|.
T Consensus 41 ~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~~~~ 86 (142)
T cd02968 41 TLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYAKAFGP 86 (142)
T ss_pred HHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4677788888888876 99999997553 335666777888775
No 443
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=22.60 E-value=4.9e+02 Score=24.33 Aligned_cols=80 Identities=11% Similarity=0.087 Sum_probs=40.5
Q ss_pred HHHHHHHHHCCC-eEEEEeCCCc---ccHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCccEEEE
Q 036571 148 LKLYKKLLSLGI-KIVFLTGRPE---DQRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRIIGN 223 (251)
Q Consensus 148 ~ell~~L~~~G~-~I~~vTnR~e---~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i~~~ 223 (251)
.++-+.+++.|. +++++|++.- ...+...+.|++.|+.. . +. ++..+.|...--.......++.+.+.++.
T Consensus 38 ~~l~~~~~~~g~~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~--~-~~--~~v~~~P~~~~v~~~~~~~r~~~~D~Iia 112 (395)
T PRK15454 38 SSCGQQAQTRGLKHLFVMADSFLHQAGMTAGLTRSLAVKGIAM--T-LW--PCPVGEPCITDVCAAVAQLRESGCDGVIA 112 (395)
T ss_pred HHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeE--E-EE--CCCCCCcCHHHHHHHHHHHHhcCcCEEEE
Confidence 334456677784 5556666542 22466788898888853 1 22 11222221111112223344567777777
Q ss_pred EcCCc-cccc
Q 036571 224 IGDQW-SDLL 232 (251)
Q Consensus 224 VGDq~-sDi~ 232 (251)
||-.. -|..
T Consensus 113 vGGGS~iD~A 122 (395)
T PRK15454 113 FGGGSVLDAA 122 (395)
T ss_pred eCChHHHHHH
Confidence 77543 4443
No 444
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=22.59 E-value=3.9e+02 Score=21.14 Aligned_cols=72 Identities=17% Similarity=0.177 Sum_probs=46.7
Q ss_pred cchhhHhhHHHHHHHHHHHHHhhhhcCCCCcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHH
Q 036571 70 LGQQYREDSEAVAYEAIVYAQSLELAGDGREIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLK 149 (251)
Q Consensus 70 ~~~~Y~~d~~~~~~~a~~~~~~~~~~~~~~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~e 149 (251)
++..|..... .-|+.+++++...++-.--|.|=-||+..-|.- . .....-++-..+
T Consensus 8 t~ppYg~q~a---~~A~~fA~all~~gh~~v~iFly~DgV~~~~~~--------~-------------~Pa~dEf~l~~~ 63 (126)
T COG1553 8 TGPPYGTESA---FSALRFAEALLEQGHELVRLFLYQDGVHNGNKG--------Q-------------KPASDEFNLIQA 63 (126)
T ss_pred ecCCCccHHH---HHHHHHHHHHHHcCCeEEEEEEeeccccccccC--------C-------------CCcccccchHHH
Confidence 4566665433 567778887765555566788889997775521 0 001123566788
Q ss_pred HHHHHHHCCCeEEEEe
Q 036571 150 LYKKLLSLGIKIVFLT 165 (251)
Q Consensus 150 ll~~L~~~G~~I~~vT 165 (251)
+++-+.++|+++-+.=
T Consensus 64 ~~~l~~~~gv~v~~C~ 79 (126)
T COG1553 64 WLELLTEQGVPVKLCV 79 (126)
T ss_pred HHHHHHHcCCcEeeeH
Confidence 8888999999887653
No 445
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=22.57 E-value=2.4e+02 Score=21.41 Aligned_cols=39 Identities=23% Similarity=0.130 Sum_probs=28.4
Q ss_pred chHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCC
Q 036571 144 LPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFY 185 (251)
Q Consensus 144 ~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~ 185 (251)
+|...++.+.+++.|+.++.|+..+. +...+..+..+++
T Consensus 43 ~~~l~~~~~~~~~~~v~vv~V~~~~~---~~~~~~~~~~~~~ 81 (149)
T cd02970 43 LRALSKLLPELDALGVELVAVGPESP---EKLEAFDKGKFLP 81 (149)
T ss_pred HHHHHHHHHHHHhcCeEEEEEeCCCH---HHHHHHHHhcCCC
Confidence 56777888888889999999986653 3334566667775
No 446
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=22.54 E-value=5.2e+02 Score=22.52 Aligned_cols=23 Identities=35% Similarity=0.293 Sum_probs=14.4
Q ss_pred HHHHHHhcCccE-EEEEcCCcccc
Q 036571 209 ERKRLEKKGYRI-IGNIGDQWSDL 231 (251)
Q Consensus 209 ~r~~L~~~g~~i-~~~VGDq~sDi 231 (251)
.-+.|.+.||+- +++++...+..
T Consensus 109 a~~~Li~~Gh~~~I~~i~~~~~~~ 132 (279)
T PF00532_consen 109 ATEYLIKKGHRRPIAFIGGPEDSS 132 (279)
T ss_dssp HHHHHHHTTCCSTEEEEEESTTTH
T ss_pred HHHHHHhcccCCeEEEEecCcchH
Confidence 335566778877 77777655443
No 447
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=22.46 E-value=4.5e+02 Score=21.74 Aligned_cols=38 Identities=13% Similarity=0.083 Sum_probs=28.0
Q ss_pred chHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhc
Q 036571 144 LPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNV 182 (251)
Q Consensus 144 ~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~ 182 (251)
..=+.++++.+.++|++|+++-++++. -+.+.++|++.
T Consensus 34 ~dl~~~l~~~~~~~~~~vfllG~~~~v-~~~~~~~l~~~ 71 (177)
T TIGR00696 34 PDLMEELCQRAGKEKLPIFLYGGKPDV-LQQLKVKLIKE 71 (177)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCCHHH-HHHHHHHHHHH
Confidence 344567788888899999999887754 55667777663
No 448
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=22.25 E-value=1.2e+02 Score=27.83 Aligned_cols=27 Identities=19% Similarity=0.123 Sum_probs=24.0
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCc
Q 036571 143 SLPESLKLYKKLLSLGIKIVFLTGRPE 169 (251)
Q Consensus 143 ~~pga~ell~~L~~~G~~I~~vTnR~e 169 (251)
--+.+++.++.++++|.+++-+||..+
T Consensus 104 eT~e~i~al~~ak~~Ga~~I~IT~~~~ 130 (340)
T PRK11382 104 KTEEVIKALELGRACGALTAAFTKRAD 130 (340)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 347899999999999999999999864
No 449
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=22.19 E-value=1.2e+02 Score=27.30 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=24.3
Q ss_pred chHHHHHHHHHHHCCCeEEEEeCCCcc
Q 036571 144 LPESLKLYKKLLSLGIKIVFLTGRPED 170 (251)
Q Consensus 144 ~pga~ell~~L~~~G~~I~~vTnR~e~ 170 (251)
-|.+.+.++.++++|.+++.+|+.+..
T Consensus 139 T~~vi~al~~Ak~~Ga~tIaIT~~~~s 165 (291)
T TIGR00274 139 TPYVIAGLQYARSLGALTISIACNPKS 165 (291)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 588999999999999999999998753
No 450
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=21.87 E-value=74 Score=27.67 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=13.7
Q ss_pred HHHHHhcCCCCCchHHHHHHHHH
Q 036571 132 FNEWVNKGEAPSLPESLKLYKKL 154 (251)
Q Consensus 132 ~~~wv~~~~~~~~pga~ell~~L 154 (251)
|.+|........-..+.|+|++-
T Consensus 154 f~ewka~aiGr~sk~VrEflEK~ 176 (249)
T KOG0183|consen 154 FSEWKANAIGRSSKTVREFLEKN 176 (249)
T ss_pred hhhhhccccccccHHHHHHHHHh
Confidence 56666555555556666666653
No 451
>COG0809 QueA S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis]
Probab=21.75 E-value=84 Score=29.11 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.4
Q ss_pred chHHHHHHHHHHHCCCeEEEEeC
Q 036571 144 LPESLKLYKKLLSLGIKIVFLTG 166 (251)
Q Consensus 144 ~pga~ell~~L~~~G~~I~~vTn 166 (251)
+.=..+||.+|+++|+.+.|||=
T Consensus 185 LHFt~~LL~kLk~kGv~~afvTL 207 (348)
T COG0809 185 LHFTEELLEKLKAKGVEIAFVTL 207 (348)
T ss_pred CCCCHHHHHHHHHCCceEEEEEE
Confidence 55578999999999999999984
No 452
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=21.71 E-value=4.7e+02 Score=23.24 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhhhhcCCCCcEEEEecCCCccCC
Q 036571 80 AVAYEAIVYAQSLELAGDGREIWIFDIDETSLSN 113 (251)
Q Consensus 80 ~~~~~a~~~~~~~~~~~~~~~avvfDIDgTlldn 113 (251)
.+..++..|.+.++. +.+|+=+.|.++++
T Consensus 9 ~~~~~~~pyi~~~~~-----~~~VIk~gG~~~~~ 37 (284)
T CHL00202 9 QVLSEALPYIQKFRG-----RIMVIKYGGAAMKN 37 (284)
T ss_pred HHHHHHHHHHHHHcC-----CeEEEEEChHHhcC
Confidence 455677788877652 57888899988865
No 453
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=21.65 E-value=3.2e+02 Score=25.43 Aligned_cols=48 Identities=10% Similarity=0.152 Sum_probs=31.5
Q ss_pred CcEEEEecCCCccCChhhHhhhcCCCCCCChHHHHHHHhcCCCCCchHHHHHHHHHHHCCCeEEEEeCC
Q 036571 99 REIWIFDIDETSLSNLPYYAKHGFGVEPFNSTLFNEWVNKGEAPSLPESLKLYKKLLSLGIKIVFLTGR 167 (251)
Q Consensus 99 ~~avvfDIDgTlldn~~~~~~~~~~~~~~~~~~~~~wv~~~~~~~~pga~ell~~L~~~G~~I~~vTnR 167 (251)
++.+|+=+=|+++.+.+. .++ ...+....+.+.++++.|+++++|++-
T Consensus 8 ~~~iVIKiGGs~l~~~~~---------~l~------------~~~i~~la~~I~~l~~~g~~vViV~sG 55 (372)
T PRK05429 8 ARRIVVKVGSSLLTGGGG---------GLD------------RARIAELARQIAALRAAGHEVVLVSSG 55 (372)
T ss_pred CCEEEEEeChhhccCCCC---------CcC------------HHHHHHHHHHHHHHHHCCCeEEEEccc
Confidence 456788887777764210 011 123445667778888999999999985
No 454
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=21.54 E-value=1.3e+02 Score=22.72 Aligned_cols=70 Identities=21% Similarity=0.096 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccch-HHHHHHHHhcCccEEEEE
Q 036571 146 ESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYK-SSERKRLEKKGYRIIGNI 224 (251)
Q Consensus 146 ga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K-~~~r~~L~~~g~~i~~~V 224 (251)
-+.++++.|+++|++|.++|.+.+. .+.....|+.. ..+ +.. ...+....+ ...++-+.+.+++++-..
T Consensus 12 ~~~~~~~~L~~~g~~V~ii~~~~~~-----~~~~~~~~i~~-~~~---~~~-~k~~~~~~~~~~l~k~ik~~~~DvIh~h 81 (139)
T PF13477_consen 12 FIYNLAKELKKRGYDVHIITPRNDY-----EKYEIIEGIKV-IRL---PSP-RKSPLNYIKYFRLRKIIKKEKPDVIHCH 81 (139)
T ss_pred HHHHHHHHHHHCCCEEEEEEcCCCc-----hhhhHhCCeEE-EEe---cCC-CCccHHHHHHHHHHHHhccCCCCEEEEe
Confidence 4678899999999999999997643 22333445432 111 111 111111111 145556667778876544
Q ss_pred c
Q 036571 225 G 225 (251)
Q Consensus 225 G 225 (251)
+
T Consensus 82 ~ 82 (139)
T PF13477_consen 82 T 82 (139)
T ss_pred c
Confidence 4
No 455
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=21.53 E-value=2.4e+02 Score=25.43 Aligned_cols=92 Identities=18% Similarity=0.412 Sum_probs=56.3
Q ss_pred CCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEEeCCCCCCC--ccccchH--HHHHHHH
Q 036571 139 GEAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLILKGSSYSGE--TAVVYKS--SERKRLE 214 (251)
Q Consensus 139 ~~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~k--p~~~~K~--~~r~~L~ 214 (251)
+....+..++|++++.+..|..+.+--|--+. ...+.|+.+|+..|.+-+=.+...-+| ....|-. .....++
T Consensus 148 GRk~~fk~IlE~ikevr~MgmEvCvTLGMv~~---qQAkeLKdAGLTAYNHNlDTSREyYskvItTRtYDdRL~Ti~nvr 224 (380)
T KOG2900|consen 148 GRKSAFKRILEMIKEVRDMGMEVCVTLGMVDQ---QQAKELKDAGLTAYNHNLDTSREYYSKVITTRTYDDRLQTIKNVR 224 (380)
T ss_pred cchhHHHHHHHHHHHHHcCCceeeeeeccccH---HHHHHHHhccceecccCccchhhhhcccceecchHHHHHHHHHHH
Confidence 44678999999999999999999988777643 446789999998775433222111111 1112321 2234455
Q ss_pred hcCccE----EEEEcCCcccccc
Q 036571 215 KKGYRI----IGNIGDQWSDLLG 233 (251)
Q Consensus 215 ~~g~~i----~~~VGDq~sDi~g 233 (251)
+.|.++ ++-.|....|-.|
T Consensus 225 ~aGikvCsGGIlGLGE~e~DriG 247 (380)
T KOG2900|consen 225 EAGIKVCSGGILGLGESEDDRIG 247 (380)
T ss_pred Hhcceecccccccccccccceee
Confidence 667664 3445666666554
No 456
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=21.45 E-value=4.2e+02 Score=24.03 Aligned_cols=44 Identities=11% Similarity=0.106 Sum_probs=31.3
Q ss_pred CchHHHHHHHHHHHCCCeEEEEe---CCCcccHHHHHHHHHhcCCCC
Q 036571 143 SLPESLKLYKKLLSLGIKIVFLT---GRPEDQRSVTENNLKNVGFYT 186 (251)
Q Consensus 143 ~~pga~ell~~L~~~G~~I~~vT---nR~e~~r~~T~~~L~~~G~~~ 186 (251)
.+..+.+.++.|++.|+++.+.+ ......-..+.+.+.++|+..
T Consensus 130 ~f~~v~~~i~~l~~~g~~v~v~~vv~~~N~~~l~~~~~~~~~lg~~~ 176 (358)
T TIGR02109 130 AFEQKLAMARAVKAAGLPLTLNFVIHRHNIDQIPEIIELAIELGADR 176 (358)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHHHHHcCCCE
Confidence 57778899999999998876533 333333456678888888764
No 457
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=21.44 E-value=4.4e+02 Score=22.79 Aligned_cols=23 Identities=13% Similarity=0.329 Sum_probs=17.6
Q ss_pred chHHHHHHHHHHHCCCeEEEEeC
Q 036571 144 LPESLKLYKKLLSLGIKIVFLTG 166 (251)
Q Consensus 144 ~pga~ell~~L~~~G~~I~~vTn 166 (251)
+..+.+.+.+++++|+++++|++
T Consensus 23 i~~~~~~i~~~~~~~~~viiV~s 45 (251)
T cd04242 23 LASLVEQIAELRNQGKEVILVSS 45 (251)
T ss_pred HHHHHHHHHHHHHCCCeEEEEec
Confidence 44455777788889999999975
No 458
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=21.36 E-value=1.8e+02 Score=27.90 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=33.7
Q ss_pred chHHHHHHHHHHHCCCeEEEEeCC-C--cccHHHHHHHHHhcCCCC
Q 036571 144 LPESLKLYKKLLSLGIKIVFLTGR-P--EDQRSVTENNLKNVGFYT 186 (251)
Q Consensus 144 ~pga~ell~~L~~~G~~I~~vTnR-~--e~~r~~T~~~L~~~G~~~ 186 (251)
..-..++.++|++.|+.-+++|+. . ..+-....+.+++.|+|.
T Consensus 322 ~~~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~~GIPv 367 (431)
T TIGR01917 322 KQFAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIERAGIPV 367 (431)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCE
Confidence 346778899999999999999965 2 233466689999999985
No 459
>PRK11660 putative transporter; Provisional
Probab=21.12 E-value=2.8e+02 Score=27.33 Aligned_cols=39 Identities=15% Similarity=0.143 Sum_probs=29.9
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCC
Q 036571 142 PSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYT 186 (251)
Q Consensus 142 ~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~ 186 (251)
..+....++.+++++ |.++.+..=++ ...+.|++.|+..
T Consensus 507 sg~~~L~~l~~~l~~-g~~l~l~~l~~-----~v~~~l~~~gl~~ 545 (568)
T PRK11660 507 GGLDAFQRFVKRLPE-GCELRICNLQF-----QPLRTLARAGIQP 545 (568)
T ss_pred HHHHHHHHHHHHHHC-CCEEEEecCCh-----HHHHHHHHCCChh
Confidence 455667888999999 99888876555 5678888888854
No 460
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=20.99 E-value=6.5e+02 Score=23.04 Aligned_cols=81 Identities=12% Similarity=0.074 Sum_probs=44.1
Q ss_pred HHHHHHHHCC-CeEEEEeCCCcc---cHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCccEEEEE
Q 036571 149 KLYKKLLSLG-IKIVFLTGRPED---QRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRIIGNI 224 (251)
Q Consensus 149 ell~~L~~~G-~~I~~vTnR~e~---~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i~~~V 224 (251)
++-+.+++.| -+++++|++... ..+...+.|++.|+.. . ++.. ..+.|....-.......++.+.+.++.|
T Consensus 14 ~l~~~l~~~g~~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~--~-~~~~--v~~~p~~~~v~~~~~~~~~~~~d~IIai 88 (370)
T cd08192 14 ELPAECAELGIKRPLIVTDPGLAALGLVARVLALLEDAGLAA--A-LFDE--VPPNPTEAAVEAGLAAYRAGGCDGVIAF 88 (370)
T ss_pred HHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeE--E-EeCC--CCCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 3445566667 488899987532 3566778888888853 2 2211 1111211111222333445567777778
Q ss_pred cC-Cccccccc
Q 036571 225 GD-QWSDLLGT 234 (251)
Q Consensus 225 GD-q~sDi~ga 234 (251)
|- +.-|+..+
T Consensus 89 GGGSviD~aK~ 99 (370)
T cd08192 89 GGGSALDLAKA 99 (370)
T ss_pred CCchHHHHHHH
Confidence 77 44676544
No 461
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=20.94 E-value=2.4e+02 Score=22.44 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=32.4
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCc-----ccHHHHHHHHHhcCCC
Q 036571 143 SLPESLKLYKKLLSLGIKIVFLTGRPE-----DQRSVTENNLKNVGFY 185 (251)
Q Consensus 143 ~~pga~ell~~L~~~G~~I~~vTnR~e-----~~r~~T~~~L~~~G~~ 185 (251)
..+.+.++.++++++++.++.+|-.+. ...+...+.+.+.+++
T Consensus 43 ~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~ 90 (171)
T cd02969 43 IEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYP 90 (171)
T ss_pred HHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCC
Confidence 356778888888888999998886553 2466777778888876
No 462
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=20.90 E-value=1.9e+02 Score=27.63 Aligned_cols=46 Identities=17% Similarity=0.095 Sum_probs=34.9
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceEEE
Q 036571 147 SLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENLIL 192 (251)
Q Consensus 147 a~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~lil 192 (251)
.+.++..+++.|.+.+++||..-..-+.+..++-..+.+.++.+++
T Consensus 203 ~v~~l~~~r~sGKk~fl~Tns~~~ytd~~mt~~~~~dW~~yfd~v~ 248 (424)
T KOG2469|consen 203 IVPLLSMLRDSGKKTFLHTNSDWDYTDIFMAFHYGFDWETYFDLVE 248 (424)
T ss_pred cccchHHHHhhccceEEeeccccchhhHHHHHHhCCCcceeEEEEE
Confidence 3338899999999999999999776677776666666666666554
No 463
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=20.88 E-value=2.7e+02 Score=19.20 Aligned_cols=20 Identities=30% Similarity=0.378 Sum_probs=11.4
Q ss_pred chHHHHHHHHHHHCCCeEEE
Q 036571 144 LPESLKLYKKLLSLGIKIVF 163 (251)
Q Consensus 144 ~pga~ell~~L~~~G~~I~~ 163 (251)
.+.+.++.+.|++.|+.+.+
T Consensus 14 ~~~a~~~~~~Lr~~g~~v~~ 33 (91)
T cd00860 14 LDYAKEVAKKLSDAGIRVEV 33 (91)
T ss_pred HHHHHHHHHHHHHCCCEEEE
Confidence 33455556666666666555
No 464
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=20.87 E-value=2.6e+02 Score=24.23 Aligned_cols=43 Identities=12% Similarity=0.178 Sum_probs=27.3
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCcc----cHHHHHHHHHhcCCC
Q 036571 143 SLPESLKLYKKLLSLGIKIVFLTGRPED----QRSVTENNLKNVGFY 185 (251)
Q Consensus 143 ~~pga~ell~~L~~~G~~I~~vTnR~e~----~r~~T~~~L~~~G~~ 185 (251)
-+..|+.+-+.|+++|++|.+++-..+. ..+...+.|+..|+.
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~~~~~~~s~~~~L~~~~~~~~~~ 93 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELDDPENTQSFEDALARALKQHGID 93 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT-TT--SSHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCCccccccHHHHHHHHHHHcCCC
Confidence 3567888999999999999999998643 245666777777764
No 465
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=20.87 E-value=6.4e+02 Score=23.26 Aligned_cols=76 Identities=17% Similarity=0.163 Sum_probs=40.3
Q ss_pred HHHHHCCCeEEEEeCCCc----ccHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcCccEEEEEcC-
Q 036571 152 KKLLSLGIKIVFLTGRPE----DQRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKGYRIIGNIGD- 226 (251)
Q Consensus 152 ~~L~~~G~~I~~vTnR~e----~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g~~i~~~VGD- 226 (251)
+.+++.|-++++||++.. ...+...+.|+..|+.. .++.+ ..+.|...--......++..+.+.++.||=
T Consensus 22 ~~~~~~~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~---~~~~~--v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGG 96 (382)
T cd08187 22 KELKKYGKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEV---VELGG--VEPNPRLETVREGIELCKEEKVDFILAVGGG 96 (382)
T ss_pred HHHHHhCCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeE---EEECC--ccCCCCHHHHHHHHHHHHHcCCCEEEEeCCh
Confidence 444555789999998642 22467778888888742 12221 111111111112223344567777777776
Q ss_pred Cccccc
Q 036571 227 QWSDLL 232 (251)
Q Consensus 227 q~sDi~ 232 (251)
+.-|.-
T Consensus 97 S~iD~a 102 (382)
T cd08187 97 SVIDSA 102 (382)
T ss_pred HHHHHH
Confidence 335554
No 466
>PRK10426 alpha-glucosidase; Provisional
Probab=20.82 E-value=2.7e+02 Score=28.07 Aligned_cols=44 Identities=14% Similarity=0.082 Sum_probs=29.3
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCC
Q 036571 141 APSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGF 184 (251)
Q Consensus 141 ~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~ 184 (251)
...+|.-.+++++|+++|+++++..+-.-......-+.+.+.|+
T Consensus 265 ~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~~~~~y~e~~~~gy 308 (635)
T PRK10426 265 SERYPQLDSRIKQLNEEGIQFLGYINPYLASDGDLCEEAAEKGY 308 (635)
T ss_pred hhhCCCHHHHHHHHHHCCCEEEEEEcCccCCCCHHHHHHHHCCc
Confidence 45688999999999999999998776532211122334445555
No 467
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=20.64 E-value=7.4e+02 Score=24.31 Aligned_cols=91 Identities=21% Similarity=0.322 Sum_probs=52.5
Q ss_pred HHHHHCCCeEEEEeCCCc-ccHHHHHHHHHhcCCCCcceEEEeCCCCCCCccccchHHHHHHHHhcC---ccEEEEEcCC
Q 036571 152 KKLLSLGIKIVFLTGRPE-DQRSVTENNLKNVGFYTWENLILKGSSYSGETAVVYKSSERKRLEKKG---YRIIGNIGDQ 227 (251)
Q Consensus 152 ~~L~~~G~~I~~vTnR~e-~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~~K~~~r~~L~~~g---~~i~~~VGDq 227 (251)
+.+++.|.+++++|.... ...+...+.|...|+.. +..++ ++.+..|+..... .....+.+.+ ...++.||-.
T Consensus 203 ~~l~~~g~k~~iV~d~~v~~~~~~l~~~L~~~g~~v-~~~v~-p~~E~~ksl~~v~-~~~~~l~~~~~~r~D~IIAIGGG 279 (542)
T PRK14021 203 QVLGPKPVKVALIHTQPVQRHSDRARTLLRQGGYEV-SDIVI-PDAEAGKTIEVAN-GIWQRLGNEGFTRSDAIVGLGGG 279 (542)
T ss_pred HHHHhcCCeEEEEECccHHHHHHHHHHHHHhCCCce-EEEEe-CCCcccCCHHHHH-HHHHHHHhcCCCCCcEEEEEcCh
Confidence 445566778888877543 22356677888888854 23333 3333334322222 2223333443 5567778884
Q ss_pred -cccccccc-----ccCcEEEeCC
Q 036571 228 -WSDLLGTN-----AGNRTFKLPD 245 (251)
Q Consensus 228 -~sDi~ga~-----~g~r~f~lPn 245 (251)
..|+.+.- .|.+.+.+|-
T Consensus 280 sv~D~AKfvA~~y~rGi~~i~vPT 303 (542)
T PRK14021 280 AATDLAGFVAATWMRGIRYVNCPT 303 (542)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCC
Confidence 48888763 4888888885
No 468
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=20.50 E-value=1.4e+02 Score=22.96 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHCCCeEEEEeCCC
Q 036571 145 PESLKLYKKLLSLGIKIVFLTGRP 168 (251)
Q Consensus 145 pga~ell~~L~~~G~~I~~vTnR~ 168 (251)
+.+.++++.+++.|.+++.+|+..
T Consensus 76 ~~~~~~~~~~~~~~~~vi~it~~~ 99 (153)
T cd05009 76 EKLESLIKEVKARGAKVIVITDDG 99 (153)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCC
Confidence 457889999999999999999987
No 469
>PLN02494 adenosylhomocysteinase
Probab=20.41 E-value=2e+02 Score=28.04 Aligned_cols=42 Identities=10% Similarity=0.080 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCC
Q 036571 145 PESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYT 186 (251)
Q Consensus 145 pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~ 186 (251)
+.+.-|++.|++.|-+|.+.+.++-..++.+...|...|++.
T Consensus 57 ~kTa~L~~tL~~~GA~v~~~~~Np~sTqd~vaaal~~~gi~v 98 (477)
T PLN02494 57 IQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSAAV 98 (477)
T ss_pred HHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhCCceE
Confidence 446678889999999999999999888899999999888875
No 470
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=20.28 E-value=4.7e+02 Score=21.39 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=16.3
Q ss_pred HHHHHHHHHCCCeEEEEeCCC
Q 036571 148 LKLYKKLLSLGIKIVFLTGRP 168 (251)
Q Consensus 148 ~ell~~L~~~G~~I~~vTnR~ 168 (251)
.++.+.+++.|++|.+|.=..
T Consensus 126 ~~~~~~l~~~~I~v~~IgiG~ 146 (183)
T cd01453 126 YETIDKLKKENIRVSVIGLSA 146 (183)
T ss_pred HHHHHHHHHcCcEEEEEEech
Confidence 456788889999988877654
No 471
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=20.24 E-value=1.2e+02 Score=29.73 Aligned_cols=35 Identities=20% Similarity=0.310 Sum_probs=29.5
Q ss_pred chHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCC
Q 036571 144 LPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYT 186 (251)
Q Consensus 144 ~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~ 186 (251)
.+++.++.+.|.+.|++|+ .|+. |.+.|+..|++.
T Consensus 10 K~~iv~lAk~L~~lGfeIi-ATgG-------Tak~L~e~GI~v 44 (511)
T TIGR00355 10 KTGIVEFAQGLVERGVELL-STGG-------TAKLLAEAGVPV 44 (511)
T ss_pred cccHHHHHHHHHHCCCEEE-Eech-------HHHHHHHCCCeE
Confidence 6789999999999999995 6664 578999999964
No 472
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=20.19 E-value=2.1e+02 Score=22.48 Aligned_cols=44 Identities=14% Similarity=0.168 Sum_probs=31.8
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCC-----cccHHHHHHHHHh-cCCC
Q 036571 142 PSLPESLKLYKKLLSLGIKIVFLTGRP-----EDQRSVTENNLKN-VGFY 185 (251)
Q Consensus 142 ~~~pga~ell~~L~~~G~~I~~vTnR~-----e~~r~~T~~~L~~-~G~~ 185 (251)
..+|...++.++++++|+.++-++... ....+...+.+++ .|+.
T Consensus 38 ~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~ 87 (152)
T cd00340 38 PQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVT 87 (152)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCC
Confidence 446888889999988999998887432 1234567777876 7875
No 473
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=20.17 E-value=3.2e+02 Score=25.51 Aligned_cols=61 Identities=16% Similarity=0.236 Sum_probs=39.9
Q ss_pred CChHHHHHHHhcC--------CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccHHHHHHHHHhcCCCCcceE
Q 036571 127 FNSTLFNEWVNKG--------EAPSLPESLKLYKKLLSLGIKIVFLTGRPEDQRSVTENNLKNVGFYTWENL 190 (251)
Q Consensus 127 ~~~~~~~~wv~~~--------~~~~~pga~ell~~L~~~G~~I~~vTnR~e~~r~~T~~~L~~~G~~~~~~l 190 (251)
.+.+.+++|.... -+|-+|++.+++++|.++|+.|.+==+... .+...+-+ +.|.....++
T Consensus 151 p~~~~~~~~~~~~~~~i~~vTlAPE~~~~~~~i~~l~~~gi~vs~GHs~A~--~~~~~~a~-~~Ga~~~THl 219 (380)
T TIGR00221 151 PDVELFKKFLCEAGGVITKVTLAPEEDQHFELIRHLKDAGIIVSAGHTNAT--YELAKAAF-KAGATHATHL 219 (380)
T ss_pred cCHHHHHHHHHhcCCCEEEEEECCCCCChHHHHHHHHHCCeEEEeeCCCCC--HHHHHHHH-HcCCCeeeee
Confidence 3557778887642 257789999999999999998887544432 33333333 4577653343
No 474
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=20.16 E-value=2.2e+02 Score=25.50 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=10.8
Q ss_pred HHHHHHHCCCeEEEEeCCC
Q 036571 150 LYKKLLSLGIKIVFLTGRP 168 (251)
Q Consensus 150 ll~~L~~~G~~I~~vTnR~ 168 (251)
+.++|.+.|+++.+++...
T Consensus 152 la~eL~~~GI~vtlI~Dsa 170 (275)
T PRK08335 152 LANELEFLGIEFEVITDAQ 170 (275)
T ss_pred HHHHHHHCCCCEEEEeccH
Confidence 3555666666666655543
No 475
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.
Probab=20.11 E-value=2.6e+02 Score=22.07 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=22.7
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCC
Q 036571 141 APSLPESLKLYKKLLSLGIKIVFLTGR 167 (251)
Q Consensus 141 ~~~~pga~ell~~L~~~G~~I~~vTnR 167 (251)
...++.+.++++..+++|++|++++-.
T Consensus 22 ~~~v~~i~~li~~~r~~~~~Vi~~~~~ 48 (155)
T cd01014 22 EAALENIAALIAAARAAGIPVIHVRHI 48 (155)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEEec
Confidence 456788999999999999999888753
No 476
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=20.10 E-value=4.9e+02 Score=23.83 Aligned_cols=44 Identities=11% Similarity=0.073 Sum_probs=32.4
Q ss_pred CchHHHHHHHHHHHCCCeEEEE---eCCCcccHHHHHHHHHhcCCCC
Q 036571 143 SLPESLKLYKKLLSLGIKIVFL---TGRPEDQRSVTENNLKNVGFYT 186 (251)
Q Consensus 143 ~~pga~ell~~L~~~G~~I~~v---TnR~e~~r~~T~~~L~~~G~~~ 186 (251)
.+..+++.++.|++.|+++.+. |.....+-..+.+.+.++|+..
T Consensus 139 ~f~~~~~~i~~l~~~g~~v~i~~vv~~~N~~~i~~~~~~~~~lgv~~ 185 (378)
T PRK05301 139 AFAKKLAVARLVKAHGYPLTLNAVIHRHNIDQIPRIIELAVELGADR 185 (378)
T ss_pred hHHHHHHHHHHHHHCCCceEEEEEeecCCHHHHHHHHHHHHHcCCCE
Confidence 6778889999999999887754 3333334556778888889864
Done!