Query 036574
Match_columns 96
No_of_seqs 102 out of 273
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 03:21:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036574.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036574hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 98.4 5.9E-07 1.3E-11 73.1 6.1 68 2-69 298-404 (455)
2 PRK10189 MATE family multidrug 98.4 8.5E-07 1.8E-11 72.1 5.9 64 2-65 316-418 (478)
3 PRK10367 DNA-damage-inducible 97.9 2.7E-05 5.8E-10 62.7 6.6 63 2-64 289-390 (441)
4 PRK01766 multidrug efflux prot 97.7 9.3E-05 2E-09 58.4 5.8 64 2-65 296-398 (456)
5 PRK00187 multidrug efflux prot 97.2 0.0008 1.7E-08 54.2 6.1 64 2-65 293-400 (464)
6 PRK09575 vmrA multidrug efflux 97.2 0.00088 1.9E-08 53.6 6.2 62 2-63 292-393 (453)
7 PF01554 MatE: MatE; InterPro 97.2 3.3E-05 7.1E-10 51.8 -1.9 64 2-65 50-152 (162)
8 PRK10189 MATE family multidrug 97.1 0.0016 3.4E-08 53.2 6.5 63 2-64 86-189 (478)
9 PRK10367 DNA-damage-inducible 96.9 0.0032 6.9E-08 50.8 6.4 63 2-64 67-168 (441)
10 PRK00187 multidrug efflux prot 96.9 0.0033 7.1E-08 50.7 6.3 63 2-64 67-167 (464)
11 COG0534 NorM Na+-driven multid 96.8 0.0031 6.7E-08 51.5 5.9 64 2-65 74-176 (455)
12 PRK09575 vmrA multidrug efflux 96.5 0.0092 2E-07 47.8 6.5 63 2-64 70-171 (453)
13 PRK01766 multidrug efflux prot 96.2 0.015 3.3E-07 45.9 6.2 64 2-65 69-171 (456)
14 TIGR00797 matE putative efflux 95.6 0.057 1.2E-06 40.2 6.5 63 3-65 51-152 (342)
15 TIGR02900 spore_V_B stage V sp 95.1 0.071 1.5E-06 41.8 6.1 62 4-65 295-391 (488)
16 TIGR01695 mviN integral membra 93.3 0.21 4.5E-06 39.4 5.3 26 4-29 283-308 (502)
17 KOG1347 Uncharacterized membra 91.6 0.062 1.3E-06 45.1 0.4 68 3-70 307-413 (473)
18 TIGR02900 spore_V_B stage V sp 91.1 0.72 1.6E-05 36.2 5.9 62 3-64 59-155 (488)
19 TIGR00797 matE putative efflux 80.9 3.3 7.3E-05 30.8 4.4 42 3-44 274-316 (342)
20 TIGR01695 mviN integral membra 78.1 5 0.00011 31.7 4.8 47 18-64 117-163 (502)
21 PRK15099 O-antigen translocase 42.4 37 0.00081 26.5 3.6 21 7-29 65-85 (416)
22 PF03023 MVIN: MviN-like prote 36.4 1.1E+02 0.0023 25.1 5.6 58 8-65 262-362 (451)
23 PF14667 Polysacc_synt_C: Poly 34.6 41 0.00088 22.1 2.4 37 29-65 3-39 (146)
24 PF04505 Dispanin: Interferon- 28.2 89 0.0019 20.4 3.2 21 10-30 46-66 (82)
25 COG3836 HpcH 2,4-dihydroxyhept 26.7 19 0.0004 29.3 -0.4 14 44-60 169-182 (255)
26 PF11970 Git3_C: G protein-cou 24.1 85 0.0018 20.5 2.5 28 15-42 2-34 (76)
27 PF11177 DUF2964: Protein of u 23.7 1.4E+02 0.003 19.4 3.4 36 30-65 12-48 (62)
28 PF03023 MVIN: MviN-like prote 22.7 2.2E+02 0.0049 23.2 5.2 55 10-64 83-137 (451)
29 PF10027 DUF2269: Predicted in 21.9 2.5E+02 0.0055 19.4 4.7 52 10-64 27-86 (150)
30 PF00752 XPG_N: XPG N-terminal 21.2 22 0.00049 23.0 -0.7 10 40-49 75-84 (101)
31 COG4960 CpaA Flp pilus assembl 21.2 64 0.0014 24.7 1.6 17 48-64 77-93 (168)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=98.40 E-value=5.9e-07 Score=73.06 Aligned_cols=68 Identities=26% Similarity=0.344 Sum_probs=62.0
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHH---------------------------------------HHHhhccchhhhh
Q 036574 2 SFSQALLAAGYSQGNYEQARQVVFRLLQ---------------------------------------FVAGSQPMNALAF 42 (96)
Q Consensus 2 IAgQALiG~aLGa~d~~~ar~v~~rvl~---------------------------------------~va~~QPinglaF 42 (96)
+|.|.++|+.+|+||++++|+.++..+. +++.+||..++.+
T Consensus 298 ~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~ 377 (455)
T COG0534 298 QAVTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQF 377 (455)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999988 8899999999999
Q ss_pred hhhhhhhcccchHHHHHHHHHHhhhcc
Q 036574 43 VLDGLYYGVSDFEYAAYSMLRVDPAFG 69 (96)
Q Consensus 43 vlDGIl~GAgD~~YLA~a~l~~a~~~g 69 (96)
+.+|.+.|+||.++....++.....++
T Consensus 378 v~~g~lrg~g~~~~~~~~~~~~~~~~~ 404 (455)
T COG0534 378 VLSGVLRGAGDAKIPFIISLLSYWGFR 404 (455)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 999999999999998888888754443
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=98.35 E-value=8.5e-07 Score=72.13 Aligned_cols=64 Identities=22% Similarity=0.205 Sum_probs=58.2
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHH---------------------------------------HHHhhccchhhhh
Q 036574 2 SFSQALLAAGYSQGNYEQARQVVFRLLQ---------------------------------------FVAGSQPMNALAF 42 (96)
Q Consensus 2 IAgQALiG~aLGa~d~~~ar~v~~rvl~---------------------------------------~va~~QPinglaF 42 (96)
.|+|+++|+.+|++|++++|+..++.++ +++..||+.++.+
T Consensus 316 ~A~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~ 395 (478)
T PRK10189 316 SASTIITGTRLGKGQIAQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASW 395 (478)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999987 7888899999999
Q ss_pred hhhhhhhcccchHHHHHHHHHHh
Q 036574 43 VLDGLYYGVSDFEYAAYSMLRVD 65 (96)
Q Consensus 43 vlDGIl~GAgD~~YLA~a~l~~a 65 (96)
+++|++.|+||.++..+..+...
T Consensus 396 ~~~g~lrg~G~t~~~~~i~~~~~ 418 (478)
T PRK10189 396 VLPAGLKGARDARYAMWVSMLGM 418 (478)
T ss_pred HHHhHhhcCCCchHHHHHHHHHH
Confidence 99999999999999887766553
No 3
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=97.94 E-value=2.7e-05 Score=62.71 Aligned_cols=63 Identities=16% Similarity=0.135 Sum_probs=48.4
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHH---------------------------------------HHHhhccchhhhh
Q 036574 2 SFSQALLAAGYSQGNYEQARQVVFRLLQ---------------------------------------FVAGSQPMNALAF 42 (96)
Q Consensus 2 IAgQALiG~aLGa~d~~~ar~v~~rvl~---------------------------------------~va~~QPinglaF 42 (96)
.|.|+++|+.+|+||++++|+..++.++ +....+|++.+.+
T Consensus 289 ~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~ 368 (441)
T PRK10367 289 YAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCY 368 (441)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999887 3334466666888
Q ss_pred hhhhhhhcccchHHHHHHHHHH
Q 036574 43 VLDGLYYGVSDFEYAAYSMLRV 64 (96)
Q Consensus 43 vlDGIl~GAgD~~YLA~a~l~~ 64 (96)
++|+++.|+.+....++.++.+
T Consensus 369 ~~~~~~~g~lrg~dt~~~~~~~ 390 (441)
T PRK10367 369 LLDGMFIGATRAAEMRNSMAVA 390 (441)
T ss_pred HHHHHhhCccchHHHHHHHHHH
Confidence 9999998888633333344443
No 4
>PRK01766 multidrug efflux protein; Reviewed
Probab=97.69 E-value=9.3e-05 Score=58.35 Aligned_cols=64 Identities=19% Similarity=0.098 Sum_probs=57.1
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHH---------------------------------------HHHhhccchhhhh
Q 036574 2 SFSQALLAAGYSQGNYEQARQVVFRLLQ---------------------------------------FVAGSQPMNALAF 42 (96)
Q Consensus 2 IAgQALiG~aLGa~d~~~ar~v~~rvl~---------------------------------------~va~~QPinglaF 42 (96)
.|.++++|+++|+||++++|+..+..++ +....+|..++-+
T Consensus 296 ~a~~~~v~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~ 375 (456)
T PRK01766 296 MALTIRVGFELGAGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQV 375 (456)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999998887 6677788899999
Q ss_pred hhhhhhhcccchHHHHHHHHHHh
Q 036574 43 VLDGLYYGVSDFEYAAYSMLRVD 65 (96)
Q Consensus 43 vlDGIl~GAgD~~YLA~a~l~~a 65 (96)
++.|++.|.||.++-.+..+...
T Consensus 376 ~~~~~l~g~g~~~~~~~~~~~~~ 398 (456)
T PRK01766 376 IGSGALRGYKDTRVIFFITFIAY 398 (456)
T ss_pred HHHhchhccCccHHHHHHHHHHH
Confidence 99999999999999888877754
No 5
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=97.25 E-value=0.0008 Score=54.25 Aligned_cols=64 Identities=14% Similarity=0.026 Sum_probs=49.5
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHH--------------------------------------------HHHhhccc
Q 036574 2 SFSQALLAAGYSQGNYEQARQVVFRLLQ--------------------------------------------FVAGSQPM 37 (96)
Q Consensus 2 IAgQALiG~aLGa~d~~~ar~v~~rvl~--------------------------------------------~va~~QPi 37 (96)
.|.++++|+.+|+||++++++..++.+. +.+..+|.
T Consensus 293 ~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~ 372 (464)
T PRK00187 293 YAVTMRVGQHYGAGRLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELF 372 (464)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999998877 12223444
Q ss_pred hhhhhhhhhhhhcccchHHHHHHHHHHh
Q 036574 38 NALAFVLDGLYYGVSDFEYAAYSMLRVD 65 (96)
Q Consensus 38 nglaFvlDGIl~GAgD~~YLA~a~l~~a 65 (96)
.++-+++.|++.|.||.++.....+...
T Consensus 373 ~~~~~v~~~~lrg~G~~~~~~~~~~~~~ 400 (464)
T PRK00187 373 DGTQTIAMGAIRGLKDARTTFLIGLACY 400 (464)
T ss_pred hHHHHHHHHhHhccCccHHHHHHHHHHH
Confidence 4455566789999999999777776654
No 6
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=97.23 E-value=0.00088 Score=53.60 Aligned_cols=62 Identities=6% Similarity=0.094 Sum_probs=49.3
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHH----------------------------------------HHHhhccchhhh
Q 036574 2 SFSQALLAAGYSQGNYEQARQVVFRLLQ----------------------------------------FVAGSQPMNALA 41 (96)
Q Consensus 2 IAgQALiG~aLGa~d~~~ar~v~~rvl~----------------------------------------~va~~QPingla 41 (96)
.+.|+++|+.+|+||++++|+..++.++ +.+..+|.-++-
T Consensus 292 ~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~ 371 (453)
T PRK09575 292 EGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFL 371 (453)
T ss_pred HhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999998 455555666666
Q ss_pred hhhhhhhhcccchHHHHHHHHH
Q 036574 42 FVLDGLYYGVSDFEYAAYSMLR 63 (96)
Q Consensus 42 FvlDGIl~GAgD~~YLA~a~l~ 63 (96)
+++-+.+.|.||.++.-..++.
T Consensus 372 ~~~~~~~~~~g~~~~~~~~~~~ 393 (453)
T PRK09575 372 VLASAYFMAVNQGGKALFISIG 393 (453)
T ss_pred HHHHHHHHHcCCcHHHHHHHHH
Confidence 6666678999999886555443
No 7
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=97.21 E-value=3.3e-05 Score=51.84 Aligned_cols=64 Identities=30% Similarity=0.396 Sum_probs=57.8
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHH---------------------------------------HHHhhccchhhhh
Q 036574 2 SFSQALLAAGYSQGNYEQARQVVFRLLQ---------------------------------------FVAGSQPMNALAF 42 (96)
Q Consensus 2 IAgQALiG~aLGa~d~~~ar~v~~rvl~---------------------------------------~va~~QPinglaF 42 (96)
.+.|.++++..|++|+++++++.++.+. +.....|..++..
T Consensus 50 ~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (162)
T PF01554_consen 50 TALQILISQNIGAGDYKRAKKVVRQGLLLSLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFF 129 (162)
T ss_dssp HHHHHHHCCCCCSSSTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccceeecccccccccccccccccccccchhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHH
Confidence 4679999999999999999999998888 7778899999999
Q ss_pred hhhhhhhcccchHHHHHHHHHHh
Q 036574 43 VLDGLYYGVSDFEYAAYSMLRVD 65 (96)
Q Consensus 43 vlDGIl~GAgD~~YLA~a~l~~a 65 (96)
++.+++.|.||.++..+..+...
T Consensus 130 ~~~~~l~~~g~~~~~~~~~~~~~ 152 (162)
T PF01554_consen 130 VFSGILQGIGRTKIAMYISIISF 152 (162)
T ss_dssp HHCCCCGCCSTHCCCHHHHHHHH
T ss_pred HHHHHHHHCCcHHHHHHHHHHHH
Confidence 99999999999999888877765
No 8
>PRK10189 MATE family multidrug exporter; Provisional
Probab=97.10 E-value=0.0016 Score=53.24 Aligned_cols=63 Identities=14% Similarity=0.119 Sum_probs=54.5
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHH-----------------------------------------HHHhhccchhh
Q 036574 2 SFSQALLAAGYSQGNYEQARQVVFRLLQ-----------------------------------------FVAGSQPMNAL 40 (96)
Q Consensus 2 IAgQALiG~aLGa~d~~~ar~v~~rvl~-----------------------------------------~va~~QPingl 40 (96)
.+.++++++.+|+||++++++..++.+. +....+|...+
T Consensus 86 ~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~ 165 (478)
T PRK10189 86 LGTTVVVAFSLGKRDRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAI 165 (478)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999888776 56677888999
Q ss_pred hhhhhhhhhcccchHHHHHHHHHH
Q 036574 41 AFVLDGLYYGVSDFEYAAYSMLRV 64 (96)
Q Consensus 41 aFvlDGIl~GAgD~~YLA~a~l~~ 64 (96)
.+++.+.+.|.||.+.-...++..
T Consensus 166 ~~~~~~~lr~~G~~~~~~~i~~~~ 189 (478)
T PRK10189 166 TLIGSGALRGAGNTKIPLLINGGM 189 (478)
T ss_pred HHHHHHHHHhcCchHHhHHHHHHH
Confidence 999999999999999877766554
No 9
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=96.88 E-value=0.0032 Score=50.85 Aligned_cols=63 Identities=17% Similarity=0.121 Sum_probs=53.9
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHH---------------------------------------HHHhhccchhhhh
Q 036574 2 SFSQALLAAGYSQGNYEQARQVVFRLLQ---------------------------------------FVAGSQPMNALAF 42 (96)
Q Consensus 2 IAgQALiG~aLGa~d~~~ar~v~~rvl~---------------------------------------~va~~QPinglaF 42 (96)
++.++++++.+|+||++++++..+..+. +.....|...+.+
T Consensus 67 ~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~ 146 (441)
T PRK10367 67 MSTTGLTAQAFGAKNPQALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANL 146 (441)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999888777 6677788889999
Q ss_pred hhhhhhhcccchHHHHHHHHHH
Q 036574 43 VLDGLYYGVSDFEYAAYSMLRV 64 (96)
Q Consensus 43 vlDGIl~GAgD~~YLA~a~l~~ 64 (96)
++.+++.|.||.+.--..+++.
T Consensus 147 ~~~~~lr~~G~~~~~~~~~ii~ 168 (441)
T PRK10367 147 VLLGWLLGVQYARAPVILLVVG 168 (441)
T ss_pred HHHHHHHHcccchHHHHHHHHH
Confidence 9999999999999866665554
No 10
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=96.85 E-value=0.0033 Score=50.73 Aligned_cols=63 Identities=16% Similarity=0.049 Sum_probs=54.1
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHH--------------------------------------HHHhhccchhhhhh
Q 036574 2 SFSQALLAAGYSQGNYEQARQVVFRLLQ--------------------------------------FVAGSQPMNALAFV 43 (96)
Q Consensus 2 IAgQALiG~aLGa~d~~~ar~v~~rvl~--------------------------------------~va~~QPinglaFv 43 (96)
.+.++++++.+|++|++++|+..++.+. +.....|..++.++
T Consensus 67 ~~~~~i~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~ 146 (464)
T PRK00187 67 AAVGTLVAIRHGAGDIEGATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMA 146 (464)
T ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999888777 66677888899999
Q ss_pred hhhhhhcccchHHHHHHHHHH
Q 036574 44 LDGLYYGVSDFEYAAYSMLRV 64 (96)
Q Consensus 44 lDGIl~GAgD~~YLA~a~l~~ 64 (96)
+.+.+.|.||.+..-..+++.
T Consensus 147 ~~~~l~~~g~~~~~~~~~~~~ 167 (464)
T PRK00187 147 LRGFTSALGRAGPVMVISLAG 167 (464)
T ss_pred HHHHHHHcCCcHHHHHHHHHH
Confidence 999999999999866665544
No 11
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=96.82 E-value=0.0031 Score=51.50 Aligned_cols=64 Identities=25% Similarity=0.394 Sum_probs=57.5
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHH---------------------------------------HHHhhccchhhhh
Q 036574 2 SFSQALLAAGYSQGNYEQARQVVFRLLQ---------------------------------------FVAGSQPMNALAF 42 (96)
Q Consensus 2 IAgQALiG~aLGa~d~~~ar~v~~rvl~---------------------------------------~va~~QPinglaF 42 (96)
++..+++++++|+||++++|++.++.+. +.....|...+-+
T Consensus 74 ~g~~~liaq~~Ga~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~ 153 (455)
T COG0534 74 TGTTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSF 153 (455)
T ss_pred HhHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999998887 7788889999999
Q ss_pred hhhhhhhcccchHHHHHHHHHHh
Q 036574 43 VLDGLYYGVSDFEYAAYSMLRVD 65 (96)
Q Consensus 43 vlDGIl~GAgD~~YLA~a~l~~a 65 (96)
++.+.+.|.||.+.--+.++++.
T Consensus 154 ~~~~~lr~~G~~~~~m~~~~~~~ 176 (455)
T COG0534 154 VLSGILRGLGDTKTPMYILLLGN 176 (455)
T ss_pred HHHHHHHhcCCCchhHHHHHHHH
Confidence 99999999999999777777764
No 12
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=96.50 E-value=0.0092 Score=47.83 Aligned_cols=63 Identities=17% Similarity=0.051 Sum_probs=51.1
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHH---------------------------------------HHHhhccchhhhh
Q 036574 2 SFSQALLAAGYSQGNYEQARQVVFRLLQ---------------------------------------FVAGSQPMNALAF 42 (96)
Q Consensus 2 IAgQALiG~aLGa~d~~~ar~v~~rvl~---------------------------------------~va~~QPinglaF 42 (96)
.+.++++++.+|+||++++++..++.++ +.....|.-.+.+
T Consensus 70 ~g~~~lvsq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~ 149 (453)
T PRK09575 70 MGTGSLLSIKRGEGDLEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAI 149 (453)
T ss_pred ccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999888 4555566777777
Q ss_pred hhhhhhhcccchHHHHHHHHHH
Q 036574 43 VLDGLYYGVSDFEYAAYSMLRV 64 (96)
Q Consensus 43 vlDGIl~GAgD~~YLA~a~l~~ 64 (96)
.+.+++.+.||.++....++..
T Consensus 150 ~~~~~l~~~g~~~~~~~~~~~~ 171 (453)
T PRK09575 150 ALPFLLRNDESPNLATGLMVIG 171 (453)
T ss_pred HHHHHHHcCCChHHHHHHHHHH
Confidence 8888899999988766665554
No 13
>PRK01766 multidrug efflux protein; Reviewed
Probab=96.22 E-value=0.015 Score=45.95 Aligned_cols=64 Identities=16% Similarity=-0.020 Sum_probs=52.3
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHH---------------------------------------HHHhhccchhhhh
Q 036574 2 SFSQALLAAGYSQGNYEQARQVVFRLLQ---------------------------------------FVAGSQPMNALAF 42 (96)
Q Consensus 2 IAgQALiG~aLGa~d~~~ar~v~~rvl~---------------------------------------~va~~QPinglaF 42 (96)
.+.+.++++++|++|++++++..++.++ +.....|..++.+
T Consensus 69 ~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~ 148 (456)
T PRK01766 69 LALTPIVAQLNGAGRRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQ 148 (456)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999988877 3345567777778
Q ss_pred hhhhhhhcccchHHHHHHHHHHh
Q 036574 43 VLDGLYYGVSDFEYAAYSMLRVD 65 (96)
Q Consensus 43 vlDGIl~GAgD~~YLA~a~l~~a 65 (96)
++-+++.|.||.+...+.++...
T Consensus 149 ~~~~~l~~~g~~~~~~~~~~i~~ 171 (456)
T PRK01766 149 VLRSFIDGLGKTKPTMVIGFLGL 171 (456)
T ss_pred HHHHHHHHcCCChHHHHHHHHHH
Confidence 88889999999988777766553
No 14
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=95.55 E-value=0.057 Score=40.20 Aligned_cols=63 Identities=27% Similarity=0.348 Sum_probs=52.0
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHH---------------------------------------HHHhhccchhhhhh
Q 036574 3 FSQALLAAGYSQGNYEQARQVVFRLLQ---------------------------------------FVAGSQPMNALAFV 43 (96)
Q Consensus 3 AgQALiG~aLGa~d~~~ar~v~~rvl~---------------------------------------~va~~QPinglaFv 43 (96)
+.+..+++.+|++|++++++..++.++ +.....|..++..+
T Consensus 51 ~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~ 130 (342)
T TIGR00797 51 ATTALVAQAVGAGNYQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFV 130 (342)
T ss_pred hHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678999999999999999888877 45556777777788
Q ss_pred hhhhhhcccchHHHHHHHHHHh
Q 036574 44 LDGLYYGVSDFEYAAYSMLRVD 65 (96)
Q Consensus 44 lDGIl~GAgD~~YLA~a~l~~a 65 (96)
+.+++.|.+|+++..+..+...
T Consensus 131 ~~~~l~~~~~~~~~~~~~i~~~ 152 (342)
T TIGR00797 131 LRGFLRGQGDTKTPMYITLIGN 152 (342)
T ss_pred HHHHHHhcCCchHHHHHHHHHH
Confidence 8999999999999888877653
No 15
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=95.13 E-value=0.071 Score=41.77 Aligned_cols=62 Identities=15% Similarity=0.161 Sum_probs=50.2
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHH-----------------------------------HHHhhccchhhhhhhhhhh
Q 036574 4 SQALLAAGYSQGNYEQARQVVFRLLQ-----------------------------------FVAGSQPMNALAFVLDGLY 48 (96)
Q Consensus 4 gQALiG~aLGa~d~~~ar~v~~rvl~-----------------------------------~va~~QPinglaFvlDGIl 48 (96)
.+..+++..|++|.++.++..++..+ +.+..+|+.++..+..+++
T Consensus 295 ~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l 374 (488)
T TIGR02900 295 LVPDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPDAGNFIRVLAPSFPFLYFSAPLQSIL 374 (488)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556899999999999999998887 5556677777777888899
Q ss_pred hcccchHHHHHHHHHHh
Q 036574 49 YGVSDFEYAAYSMLRVD 65 (96)
Q Consensus 49 ~GAgD~~YLA~a~l~~a 65 (96)
.+.||.++..+.++..+
T Consensus 375 ~~~g~~~~~~~~~~~~~ 391 (488)
T TIGR02900 375 QGLGKQKVALRNSLIGA 391 (488)
T ss_pred HhcCcchHHHHHHHHHH
Confidence 99999998888776664
No 16
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=93.34 E-value=0.21 Score=39.41 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=22.4
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHH
Q 036574 4 SQALLAAGYSQGNYEQARQVVFRLLQ 29 (96)
Q Consensus 4 gQALiG~aLGa~d~~~ar~v~~rvl~ 29 (96)
.+..+++..|++|.+++|+..++.++
T Consensus 283 ~~P~~s~~~~~~~~~~~~~~~~~~~~ 308 (502)
T TIGR01695 283 LLPKLSRHASEGNWNELRDLLNQGIR 308 (502)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 45568999999999999999998887
No 17
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=91.60 E-value=0.062 Score=45.09 Aligned_cols=68 Identities=25% Similarity=0.148 Sum_probs=58.3
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHH---------------------------------------HHHhhccchhhhhh
Q 036574 3 FSQALLAAGYSQGNYEQARQVVFRLLQ---------------------------------------FVAGSQPMNALAFV 43 (96)
Q Consensus 3 AgQALiG~aLGa~d~~~ar~v~~rvl~---------------------------------------~va~~QPinglaFv 43 (96)
|...-++..||+++++++|..+...+. +++.++.+|+.-.+
T Consensus 307 a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v 386 (473)
T KOG1347|consen 307 AVSTRVSNELGAGKPKRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAV 386 (473)
T ss_pred hHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 556678999999999999988877754 88899999999999
Q ss_pred hhhhhhcccchHHHHHHHHHHhhhccC
Q 036574 44 LDGLYYGVSDFEYAAYSMLRVDPAFGH 70 (96)
Q Consensus 44 lDGIl~GAgD~~YLA~a~l~~a~~~g~ 70 (96)
+.|+..|.|.-.+.|+..+....++|.
T Consensus 387 ~~Gva~g~g~q~~ga~vnl~~yyl~G~ 413 (473)
T KOG1347|consen 387 LSGVARGSGWQQIGAVINLVAYYLVGA 413 (473)
T ss_pred hhheEEeeccccceEEEeeeeeeEecC
Confidence 999999999999999988887655554
No 18
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=91.13 E-value=0.72 Score=36.16 Aligned_cols=62 Identities=19% Similarity=0.319 Sum_probs=46.0
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHH-----------------------------------HHHhhccchhhhhhhhhh
Q 036574 3 FSQALLAAGYSQGNYEQARQVVFRLLQ-----------------------------------FVAGSQPMNALAFVLDGL 47 (96)
Q Consensus 3 AgQALiG~aLGa~d~~~ar~v~~rvl~-----------------------------------~va~~QPinglaFvlDGI 47 (96)
+..-.+++..|++|++++++..+..+. +.....|+.++..++.+.
T Consensus 59 a~~~~is~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 138 (488)
T TIGR02900 59 AISKFVAEASAKNDRKNIKKILKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERSLYSLLVICPAMPFIALSSVLKGY 138 (488)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567788999999999888776655 223445556667778999
Q ss_pred hhcccchHHHHHHHHHH
Q 036574 48 YYGVSDFEYAAYSMLRV 64 (96)
Q Consensus 48 l~GAgD~~YLA~a~l~~ 64 (96)
+.|-+|+++.+...+..
T Consensus 139 l~~~~~~~~~~~~~~i~ 155 (488)
T TIGR02900 139 FQGISNMKPPAYIQVIE 155 (488)
T ss_pred HhhhccchHhHHHHHHH
Confidence 99999999988776544
No 19
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=80.85 E-value=3.3 Score=30.76 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=31.6
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHH-HHHhhccchhhhhhh
Q 036574 3 FSQALLAAGYSQGNYEQARQVVFRLLQ-FVAGSQPMNALAFVL 44 (96)
Q Consensus 3 AgQALiG~aLGa~d~~~ar~v~~rvl~-~va~~QPinglaFvl 44 (96)
+.+..+++.+|++|.++.|+..++.++ .+...-|+....+++
T Consensus 274 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 316 (342)
T TIGR00797 274 AVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILF 316 (342)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788999999999999999998888 444455555544433
No 20
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=78.09 E-value=5 Score=31.70 Aligned_cols=47 Identities=17% Similarity=0.251 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHhhccchhhhhhhhhhhhcccchHHHHHHHHHH
Q 036574 18 EQARQVVFRLLQFVAGSQPMNALAFVLDGLYYGVSDFEYAAYSMLRV 64 (96)
Q Consensus 18 ~~ar~v~~rvl~~va~~QPinglaFvlDGIl~GAgD~~YLA~a~l~~ 64 (96)
++.++.+...+++.....|+.++..++.|++.|-+|+++.+...+..
T Consensus 117 ~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ 163 (502)
T TIGR01695 117 DETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFSPILF 163 (502)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHHHHHH
Confidence 34557788889999999999999999999999999999998887765
No 21
>PRK15099 O-antigen translocase; Provisional
Probab=42.45 E-value=37 Score=26.53 Aligned_cols=21 Identities=24% Similarity=0.059 Sum_probs=14.4
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHH
Q 036574 7 LLAAGYSQGNYEQARQVVFRLLQ 29 (96)
Q Consensus 7 LiG~aLGa~d~~~ar~v~~rvl~ 29 (96)
++++. ++|+++++++....+.
T Consensus 65 ~ia~~--~~~~~~~~~~~~~~~~ 85 (416)
T PRK15099 65 YVAQY--HDQPQQLRAVVGTSSA 85 (416)
T ss_pred eHHhc--CCCHHHHHHHHHHHHH
Confidence 35555 6788888887666555
No 22
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=36.44 E-value=1.1e+02 Score=25.07 Aligned_cols=58 Identities=21% Similarity=0.288 Sum_probs=38.3
Q ss_pred HHHhhcCCCHHHHHHHHHHHHH-------------------------------------------HHHhhccchhhhhhh
Q 036574 8 LAAGYSQGNYEQARQVVFRLLQ-------------------------------------------FVAGSQPMNALAFVL 44 (96)
Q Consensus 8 iG~aLGa~d~~~ar~v~~rvl~-------------------------------------------~va~~QPinglaFvl 44 (96)
+.+...++|.++.|+..++.++ +.+...|..++.-++
T Consensus 262 ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll 341 (451)
T PF03023_consen 262 LSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLL 341 (451)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3566778888888888888877 444555555555566
Q ss_pred hhhhhcccchHHHHHHHHHHh
Q 036574 45 DGLYYGVSDFEYAAYSMLRVD 65 (96)
Q Consensus 45 DGIl~GAgD~~YLA~a~l~~a 65 (96)
.-.++--+|.+.-.+.++.+.
T Consensus 342 ~r~fya~~~~~~~~~~~~~~~ 362 (451)
T PF03023_consen 342 SRVFYALGDTKTPVRISVISV 362 (451)
T ss_pred HHHHHHccCcHhHHHHHHHHH
Confidence 666666666666555555543
No 23
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=34.61 E-value=41 Score=22.06 Aligned_cols=37 Identities=14% Similarity=0.050 Sum_probs=28.8
Q ss_pred HHHHhhccchhhhhhhhhhhhcccchHHHHHHHHHHh
Q 036574 29 QFVAGSQPMNALAFVLDGLYYGVSDFEYAAYSMLRVD 65 (96)
Q Consensus 29 ~~va~~QPinglaFvlDGIl~GAgD~~YLA~a~l~~a 65 (96)
++++...++.++...+.-++.+.++.++..+.+++.+
T Consensus 3 ~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~ 39 (146)
T PF14667_consen 3 QILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGA 39 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 3455666667777777889999999999988887774
No 24
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=28.21 E-value=89 Score=20.44 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=16.8
Q ss_pred HhhcCCCHHHHHHHHHHHHHH
Q 036574 10 AGYSQGNYEQARQVVFRLLQF 30 (96)
Q Consensus 10 ~aLGa~d~~~ar~v~~rvl~~ 30 (96)
+..-+||+++|++.+++.-++
T Consensus 46 ~~~~~Gd~~~A~~aS~~Ak~~ 66 (82)
T PF04505_consen 46 SRYAAGDYEGARRASRKAKKW 66 (82)
T ss_pred HHHHCCCHHHHHHHHHHhHHH
Confidence 456688999999998888773
No 25
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=26.73 E-value=19 Score=29.28 Aligned_cols=14 Identities=43% Similarity=0.740 Sum_probs=12.2
Q ss_pred hhhhhhcccchHHHHHH
Q 036574 44 LDGLYYGVSDFEYAAYS 60 (96)
Q Consensus 44 lDGIl~GAgD~~YLA~a 60 (96)
.||||+|.+| |+++
T Consensus 169 VDgvFiGPaD---Laas 182 (255)
T COG3836 169 VDGVFIGPAD---LAAS 182 (255)
T ss_pred CCeEEECHHH---HHHH
Confidence 6999999999 6666
No 26
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=24.14 E-value=85 Score=20.53 Aligned_cols=28 Identities=14% Similarity=0.124 Sum_probs=14.7
Q ss_pred CCHHHHHHHHHHHHH-----HHHhhccchhhhh
Q 036574 15 GNYEQARQVVFRLLQ-----FVAGSQPMNALAF 42 (96)
Q Consensus 15 ~d~~~ar~v~~rvl~-----~va~~QPinglaF 42 (96)
++.++.++..+.++- ++.-.-|+..=..
T Consensus 2 ~~r~~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~ 34 (76)
T PF11970_consen 2 KRRKRIRRQLRSMFIYPLVYIVLWLFPFAAHRM 34 (76)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666655 3333336544444
No 27
>PF11177 DUF2964: Protein of unknown function (DUF2964); InterPro: IPR021347 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=23.66 E-value=1.4e+02 Score=19.41 Aligned_cols=36 Identities=22% Similarity=0.304 Sum_probs=27.7
Q ss_pred HHHhhccchhhhhhhhhhhhc-ccchHHHHHHHHHHh
Q 036574 30 FVAGSQPMNALAFVLDGLYYG-VSDFEYAAYSMLRVD 65 (96)
Q Consensus 30 ~va~~QPinglaFvlDGIl~G-AgD~~YLA~a~l~~a 65 (96)
-++.+.-++|+..+.+|.|+= ...++|-..+.+...
T Consensus 12 tiavFiaLagl~~~I~GlLfD~~~~~~yg~~al~~Gv 48 (62)
T PF11177_consen 12 TIAVFIALAGLAAVIHGLLFDEERVFRYGVIALVVGV 48 (62)
T ss_pred HHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHH
Confidence 556666789999999999997 777999666655443
No 28
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=22.71 E-value=2.2e+02 Score=23.24 Aligned_cols=55 Identities=18% Similarity=0.173 Sum_probs=46.6
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHhhccchhhhhhhhhhhhcccchHHHHHHHHHH
Q 036574 10 AGYSQGNYEQARQVVFRLLQFVAGSQPMNALAFVLDGLYYGVSDFEYAAYSMLRV 64 (96)
Q Consensus 10 ~aLGa~d~~~ar~v~~rvl~~va~~QPinglaFvlDGIl~GAgD~~YLA~a~l~~ 64 (96)
+.+..+-.++.++++...+|+....+|+.++.=++.|++..-++|..-+.+-+..
T Consensus 83 ~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~ 137 (451)
T PF03023_consen 83 RLLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLF 137 (451)
T ss_pred HHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 5666666778888999999999999999999999999999999998877665543
No 29
>PF10027 DUF2269: Predicted integral membrane protein (DUF2269); InterPro: IPR018729 Members of this family of bacterial hypothetical integral membrane proteins have no known function.
Probab=21.86 E-value=2.5e+02 Score=19.45 Aligned_cols=52 Identities=12% Similarity=0.062 Sum_probs=32.2
Q ss_pred HhhcCCCHHHHHHHHHHHHH-------HHHhhccchhhhhhhh-hhhhcccchHHHHHHHHHH
Q 036574 10 AGYSQGNYEQARQVVFRLLQ-------FVAGSQPMNALAFVLD-GLYYGVSDFEYAAYSMLRV 64 (96)
Q Consensus 10 ~aLGa~d~~~ar~v~~rvl~-------~va~~QPinglaFvlD-GIl~GAgD~~YLA~a~l~~ 64 (96)
++-.++|.+..+...+.+.. .....||+.|+..+.- |... ++ .++-.+.++.
T Consensus 27 ~a~r~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vtG~~l~~~~g~~~--~~-~Wl~~s~vL~ 86 (150)
T PF10027_consen 27 RARRTGDPEAIARALRAVVLADWIFTAPGGILLPVTGLWLAWLLGWPL--GQ-PWLLVSLVLF 86 (150)
T ss_pred HhhccCCHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc--CC-hHHHHHHHHH
Confidence 44566777776665555544 5778899999999765 4423 44 4445544433
No 30
>PF00752 XPG_N: XPG N-terminal domain; InterPro: IPR006085 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. People's skin cells with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-G is one of the most rare and phenotypically heterogeneous of XP, showing anything from slight to extreme dysfunction in DNA excision repair [, ]. XP-G can be corrected by a 133 Kd nuclear protein, XPGC []. XPGC is an acidic protein that confers normal UV resistance in expressing cells []. It is a magnesium-dependent, single-strand DNA endonuclease that makes structure-specific endonucleolytic incisions in a DNA substrate containing a duplex region and single-stranded arms [, ]. XPGC cleaves one strand of the duplex at the border with the single-stranded region []. XPG belongs to a family of proteins that includes RAD2 from Saccharomyces cerevisiae (Baker's yeast) and rad13 from Schizosaccharomyces pombe (Fission yeast), which are single-stranded DNA endonucleases [, ]; mouse and human FEN-1, a structure-specific endonuclease; RAD2 from fission yeast and RAD27 from budding yeast; fission yeast exo1, a 5'-3' double-stranded DNA exonuclease that may act in a pathway that corrects mismatched base pairs; yeast DHS1, and yeast DIN7. Sequence alignment of this family of proteins reveals that similarities are largely confined to two regions. The first is located at the N-terminal extremity (N-region) and corresponds to the first 95 to 105 amino acids. The second region is internal (I-region) and found towards the C terminus; it spans about 140 residues and contains a highly conserved core of 27 amino acids that includes a conserved pentapeptide (E-A-[DE]-A-[QS]). It is possible that the conserved acidic residues are involved in the catalytic mechanism of DNA excision repair in XPG. The amino acids linking the N- and I-regions are not conserved. This entry represents the N-terminal of XPG.; GO: 0004518 nuclease activity, 0006281 DNA repair; PDB: 1A77_A 1A76_A 1MC8_B 3QEB_Z 3QEA_Z 3QE9_Y 1UL1_Z 3Q8K_A 3Q8M_A 3Q8L_A ....
Probab=21.24 E-value=22 Score=22.98 Aligned_cols=10 Identities=40% Similarity=0.411 Sum_probs=5.7
Q ss_pred hhhhhhhhhh
Q 036574 40 LAFVLDGLYY 49 (96)
Q Consensus 40 laFvlDGIl~ 49 (96)
.+|||||.-.
T Consensus 75 PifVFDG~~~ 84 (101)
T PF00752_consen 75 PIFVFDGKPP 84 (101)
T ss_dssp EEEEE--STT
T ss_pred EEEEECCCCc
Confidence 3699999754
No 31
>COG4960 CpaA Flp pilus assembly protein, protease CpaA [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=21.16 E-value=64 Score=24.66 Aligned_cols=17 Identities=24% Similarity=0.141 Sum_probs=14.2
Q ss_pred hhcccchHHHHHHHHHH
Q 036574 48 YYGVSDFEYAAYSMLRV 64 (96)
Q Consensus 48 l~GAgD~~YLA~a~l~~ 64 (96)
.+|+||.|+++..++..
T Consensus 77 ~MGgGDvKLlav~~l~~ 93 (168)
T COG4960 77 VMGGGDVKLLAVLGLWL 93 (168)
T ss_pred ccCcchHHHHHHHHHHh
Confidence 37999999999887665
Done!