Query 036574
Match_columns 96
No_of_seqs 102 out of 273
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 04:51:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036574.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036574hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 97.1 0.00025 8.4E-09 52.8 2.4 64 2-65 295-397 (460)
2 3mkt_A Multi antimicrobial ext 93.2 0.03 1E-06 41.5 1.5 62 3-64 70-169 (460)
3 1pc2_A Mitochondria fission pr 40.3 12 0.00041 26.3 1.6 18 12-29 82-99 (152)
4 2o14_A Hypothetical protein YX 28.2 24 0.00081 27.0 1.6 37 44-80 338-374 (375)
5 2hzs_I RNA polymerase II media 22.2 16 0.00053 19.5 -0.3 15 66-80 13-27 (27)
6 3bzw_A Putative lipase; protei 21.0 59 0.002 22.7 2.4 36 43-80 237-272 (274)
7 1x31_C Sarcosine oxidase gamma 20.7 61 0.0021 23.0 2.5 33 48-80 174-206 (206)
8 1j1v_A Chromosomal replication 18.7 98 0.0034 19.6 2.9 23 7-29 51-73 (94)
9 3blc_A Inner membrane protein 17.5 64 0.0022 24.3 2.1 31 50-80 299-329 (330)
10 2v36_B Gamma-glutamyltranspept 16.8 17 0.00058 26.4 -1.3 32 44-80 161-192 (193)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=97.05 E-value=0.00025 Score=52.84 Aligned_cols=64 Identities=17% Similarity=0.043 Sum_probs=56.7
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHH---------------------------------------HHHhhccchhhhh
Q 036574 2 SFSQALLAAGYSQGNYEQARQVVFRLLQ---------------------------------------FVAGSQPMNALAF 42 (96)
Q Consensus 2 IAgQALiG~aLGa~d~~~ar~v~~rvl~---------------------------------------~va~~QPinglaF 42 (96)
.+.+..+++.+|++|++++|+..++.++ +.+..+|+.++..
T Consensus 295 ~a~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 374 (460)
T 3mkt_A 295 AAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQV 374 (460)
T ss_dssp HHHHHHHHHHHHSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999988877 7788889999999
Q ss_pred hhhhhhhcccchHHHHHHHHHHh
Q 036574 43 VLDGLYYGVSDFEYAAYSMLRVD 65 (96)
Q Consensus 43 vlDGIl~GAgD~~YLA~a~l~~a 65 (96)
++.+++.|.||.++..+..+...
T Consensus 375 ~~~~~l~~~g~~~~~~~~~~~~~ 397 (460)
T 3mkt_A 375 VAAGSLRGYKDMTAIFHRTFISY 397 (460)
T ss_dssp HHHHHHGGGSTHHHHHHHHHHHH
T ss_pred HHHHHHhcCCchHHHHHHHHHHH
Confidence 99999999999999888877664
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=93.20 E-value=0.03 Score=41.52 Aligned_cols=62 Identities=18% Similarity=-0.043 Sum_probs=48.1
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHH--------------------------------------HHHhhccchhhhhhh
Q 036574 3 FSQALLAAGYSQGNYEQARQVVFRLLQ--------------------------------------FVAGSQPMNALAFVL 44 (96)
Q Consensus 3 AgQALiG~aLGa~d~~~ar~v~~rvl~--------------------------------------~va~~QPinglaFvl 44 (96)
+.+.++++.+|++|.+++++..++.+. +.....|+.++..++
T Consensus 70 ~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~ 149 (460)
T 3mkt_A 70 ALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQAL 149 (460)
T ss_dssp HHGGGCTTTTSSSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889999999999988887766 334445667777788
Q ss_pred hhhhhcccchHHHHHHHHHH
Q 036574 45 DGLYYGVSDFEYAAYSMLRV 64 (96)
Q Consensus 45 DGIl~GAgD~~YLA~a~l~~ 64 (96)
.+++.|-+|+++.....+..
T Consensus 150 ~~~l~~~~~~~~~~~~~~~~ 169 (460)
T 3mkt_A 150 RSFTDGMSLTKPAMVIGFIG 169 (460)
T ss_dssp TTTTCTTSCCTTTHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHHHH
Confidence 99999999998877776665
No 3
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=40.30 E-value=12 Score=26.28 Aligned_cols=18 Identities=44% Similarity=0.541 Sum_probs=14.7
Q ss_pred hcCCCHHHHHHHHHHHHH
Q 036574 12 YSQGNYEQARQVVFRLLQ 29 (96)
Q Consensus 12 LGa~d~~~ar~v~~rvl~ 29 (96)
+-.+||+++|+-.+++++
T Consensus 82 ~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 82 YRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp HHTSCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHh
Confidence 445899999999888877
No 4
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=28.21 E-value=24 Score=26.98 Aligned_cols=37 Identities=19% Similarity=0.051 Sum_probs=24.0
Q ss_pred hhhhhhcccchHHHHHHHHHHhhhccCcccccccccc
Q 036574 44 LDGLYYGVSDFEYAAYSMLRVDPAFGHDEKVHLHNHH 80 (96)
Q Consensus 44 lDGIl~GAgD~~YLA~a~l~~a~~~g~~g~~~~~~~~ 80 (96)
-||++.-..-.+.+|....-..--+....+.+.|.||
T Consensus 338 ~DgvHpn~~G~~~~A~~i~~~L~~~~~~~~~~~~~~~ 374 (375)
T 2o14_A 338 GDTLHPNRAGADALARLAVQELKRQGIAGFLEHHHHH 374 (375)
T ss_dssp TCSSSBBHHHHHHHHHHHHHHHHHTTCTTC-------
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcccchhhhhcccC
Confidence 4999998877888888777777777788888877776
No 5
>2hzs_I RNA polymerase II mediator complex subunit 8; beta barrel, channel, helix, transcription; 2.70A {Saccharomyces cerevisiae}
Probab=22.23 E-value=16 Score=19.51 Aligned_cols=15 Identities=33% Similarity=0.558 Sum_probs=10.4
Q ss_pred hhccCcccccccccc
Q 036574 66 PAFGHDEKVHLHNHH 80 (96)
Q Consensus 66 ~~~g~~g~~~~~~~~ 80 (96)
+-|.+.|.-|.|.||
T Consensus 13 lkftftgekhhhhhh 27 (27)
T 2hzs_I 13 LKFTFTGEKHHHHHH 27 (27)
T ss_dssp HHHHHHCCCCSSCCC
T ss_pred EEEEecccccccccC
Confidence 346677877777776
No 6
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC, structural genomics; 1.87A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.23.10.9
Probab=20.97 E-value=59 Score=22.68 Aligned_cols=36 Identities=17% Similarity=0.040 Sum_probs=19.8
Q ss_pred hhhhhhhcccchHHHHHHHHHHhhhccCcccccccccc
Q 036574 43 VLDGLYYGVSDFEYAAYSMLRVDPAFGHDEKVHLHNHH 80 (96)
Q Consensus 43 vlDGIl~GAgD~~YLA~a~l~~a~~~g~~g~~~~~~~~ 80 (96)
.-||++.-..-.+.+ +-.+...++...+-+++|.||
T Consensus 237 ~~Dg~Hpn~~G~~~i--A~~i~~~ll~~~~~~~~~~~~ 272 (274)
T 3bzw_A 237 GYDRLHPDTKGQERM--ARTLMYQLLALPVAFEGHHHH 272 (274)
T ss_dssp TTEEEEECHHHHHHH--HHHHHHHGGGSCSCC------
T ss_pred CCCCcCCCHHHHHHH--HHHHHHHHhcccccccccccc
Confidence 479998865555544 444555567777888888776
No 7
>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreduct; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* 3ad7_C* 3ad8_C* 3ad9_C* 3ada_C*
Probab=20.74 E-value=61 Score=22.96 Aligned_cols=33 Identities=24% Similarity=0.229 Sum_probs=21.6
Q ss_pred hhcccchHHHHHHHHHHhhhccCcccccccccc
Q 036574 48 YYGVSDFEYAAYSMLRVDPAFGHDEKVHLHNHH 80 (96)
Q Consensus 48 l~GAgD~~YLA~a~l~~a~~~g~~g~~~~~~~~ 80 (96)
+.=.++..++....+-+...+|+.-.-|.|.||
T Consensus 174 ~v~~~~A~~lw~~L~~ag~e~g~~~~~~~~~~~ 206 (206)
T 1x31_C 174 LPRASFTEHTVHWLIDAMSEFSAAEVAHHHHHH 206 (206)
T ss_dssp ECBGGGHHHHHHHHHHHHGGGGSCCCC------
T ss_pred EEEHHHHHHHHHHHHHHHHHhCCCcccccccCC
Confidence 344677889999988888899987777777776
No 8
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=18.74 E-value=98 Score=19.58 Aligned_cols=23 Identities=4% Similarity=0.082 Sum_probs=18.4
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHH
Q 036574 7 LLAAGYSQGNYEQARQVVFRLLQ 29 (96)
Q Consensus 7 LiG~aLGa~d~~~ar~v~~rvl~ 29 (96)
=||+.||.+|...+-...+++-+
T Consensus 51 ~IG~~fggrdHsTV~ha~~ki~~ 73 (94)
T 1j1v_A 51 EIGDAFGGRDHTTVLHACRKIEQ 73 (94)
T ss_dssp HHHHHTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHH
Confidence 37999999999988777777644
No 9
>3blc_A Inner membrane protein OXAA; YIDC, membrane assembly facilitator, chaperone, periplasmic inner membrane, transmembrane; 2.50A {Escherichia coli K12}
Probab=17.54 E-value=64 Score=24.30 Aligned_cols=31 Identities=13% Similarity=0.124 Sum_probs=17.0
Q ss_pred cccchHHHHHHHHHHhhhccCcccccccccc
Q 036574 50 GVSDFEYAAYSMLRVDPAFGHDEKVHLHNHH 80 (96)
Q Consensus 50 GAgD~~YLA~a~l~~a~~~g~~g~~~~~~~~ 80 (96)
+..+.-..-|-.+++-+.|-+-..+|.|.||
T Consensus 299 ~L~~~VDyGW~~fiakPlF~lL~~l~~~~~~ 329 (330)
T 3blc_A 299 HLDLTVDYGWLWFISQPLLVPRGSLEHHHHH 329 (330)
T ss_dssp TCCCHHHHHHHHHHTSCCCCCCCC-------
T ss_pred ChhheecccCHHHHHHHHHHHHHHhhhhccC
Confidence 3444444456677888999999999999888
No 10
>2v36_B Gamma-glutamyltranspeptidase small chain; transferase, glutathione biosynthesis, gamma-glutamyl transferase, acyltransferase, zymogen; 1.85A {Bacillus subtilis} PDB: 3a75_B*
Probab=16.81 E-value=17 Score=26.40 Aligned_cols=32 Identities=25% Similarity=0.403 Sum_probs=17.5
Q ss_pred hhhhhhcccchHHHHHHHHHHhhhccCcccccccccc
Q 036574 44 LDGLYYGVSDFEYAAYSMLRVDPAFGHDEKVHLHNHH 80 (96)
Q Consensus 44 lDGIl~GAgD~~YLA~a~l~~a~~~g~~g~~~~~~~~ 80 (96)
-||.+.|++|-|-- ..+..+-++-+.+.|.||
T Consensus 161 ~~g~~~g~sDpR~~-----G~a~~~~~~~~~~~~~~~ 192 (193)
T 2v36_B 161 ENGTFKGVADSSRN-----GAAIGINLKRKLEHHHHH 192 (193)
T ss_dssp TTTEEEEECCTTTT-----CBC-CCCCCCC-------
T ss_pred CCCEEEEEeCCCCC-----CeEEEEEeechhhhcccC
Confidence 47999999999851 234455778888877776
Done!