Query 036574
Match_columns 96
No_of_seqs 102 out of 273
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 04:52:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036574.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036574hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2o3aa1 c.116.1.8 (A:1-167) Un 21.8 26 0.0019 24.0 2.5 22 30-52 120-144 (167)
2 d1nuba2 g.3.11.3 (A:53-77) Dom 20.0 11 0.0008 18.8 0.1 6 77-82 4-9 (26)
3 d1j1va_ a.4.12.2 (A:) Chromoso 12.2 87 0.0064 18.1 2.9 23 7-29 51-73 (94)
4 d1b43a2 c.120.1.2 (A:1-219) Fl 10.7 17 0.0013 24.2 -0.9 9 40-48 74-82 (219)
5 d1ul1x2 c.120.1.2 (X:2-217) Fl 10.5 17 0.0012 23.8 -1.1 9 40-48 80-88 (216)
6 d1rxwa2 c.120.1.2 (A:3-219) Fl 10.5 17 0.0012 24.1 -1.1 9 40-48 73-81 (217)
7 d1kr4a_ d.58.5.2 (A:) Hypothet 9.2 33 0.0024 21.1 0.1 33 15-48 16-52 (110)
8 d1a77a2 c.120.1.2 (A:2-208) Fl 9.0 23 0.0017 23.3 -0.9 8 40-47 74-81 (207)
9 d1j6ua2 c.59.1.1 (A:296-446) U 7.7 72 0.0052 19.2 1.3 15 47-61 129-143 (151)
10 d1mrza2 c.26.1.3 (A:2-158) FMN 7.3 37 0.0027 21.6 -0.3 9 43-51 6-14 (157)
No 1
>d2o3aa1 c.116.1.8 (A:1-167) Uncharacterized protein AF0751 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=21.80 E-value=26 Score=23.99 Aligned_cols=22 Identities=41% Similarity=0.626 Sum_probs=17.5
Q ss_pred HHHhhcc---chhhhhhhhhhhhccc
Q 036574 30 FVAGSQP---MNALAFVLDGLYYGVS 52 (96)
Q Consensus 30 ~va~~QP---inglaFvlDGIl~GAg 52 (96)
+.+.-|| +++++..+|-++ |-+
T Consensus 120 VaVgNQPHSEVAALAiFLDrl~-G~~ 144 (167)
T d2o3aa1 120 ISIGTQPHSEVAALAVFLDRVL-GKV 144 (167)
T ss_dssp EESSSSCCCHHHHHHHHHHHHT-CCT
T ss_pred eecCCCCcHHHHHHHHHHHHhh-ChH
Confidence 6677888 889999999876 654
No 2
>d1nuba2 g.3.11.3 (A:53-77) Domain of BM-40/SPARC/osteonectin {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.98 E-value=11 Score=18.77 Aligned_cols=6 Identities=67% Similarity=1.464 Sum_probs=4.6
Q ss_pred cccchh
Q 036574 77 HNHHCL 82 (96)
Q Consensus 77 ~~~~~~ 82 (96)
-||||-
T Consensus 4 lnhhck 9 (26)
T d1nuba2 4 QNHHCK 9 (26)
T ss_dssp TTCCCC
T ss_pred cccccc
Confidence 389995
No 3
>d1j1va_ a.4.12.2 (A:) Chromosomal replication initiation factor DnaA C-terminal domain IV {Escherichia coli [TaxId: 562]}
Probab=12.19 E-value=87 Score=18.13 Aligned_cols=23 Identities=4% Similarity=0.082 Sum_probs=17.5
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHH
Q 036574 7 LLAAGYSQGNYEQARQVVFRLLQ 29 (96)
Q Consensus 7 LiG~aLGa~d~~~ar~v~~rvl~ 29 (96)
=||+.||.+|...+-...+++-+
T Consensus 51 ~Ig~~fg~rdHsTV~~a~kki~~ 73 (94)
T d1j1va_ 51 EIGDAFGGRDHTTVLHACRKIEQ 73 (94)
T ss_dssp HHHHHTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCchHHHHHHHHHHH
Confidence 37999999999987776666543
No 4
>d1b43a2 c.120.1.2 (A:1-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=10.71 E-value=17 Score=24.16 Aligned_cols=9 Identities=33% Similarity=0.508 Sum_probs=7.4
Q ss_pred hhhhhhhhh
Q 036574 40 LAFVLDGLY 48 (96)
Q Consensus 40 laFvlDGIl 48 (96)
.+|||||.-
T Consensus 74 pVFVFDG~~ 82 (219)
T d1b43a2 74 PVYVFDGEP 82 (219)
T ss_dssp EEEEECCSC
T ss_pred EEEEeCCCC
Confidence 579999964
No 5
>d1ul1x2 c.120.1.2 (X:2-217) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.50 E-value=17 Score=23.75 Aligned_cols=9 Identities=33% Similarity=0.534 Sum_probs=7.1
Q ss_pred hhhhhhhhh
Q 036574 40 LAFVLDGLY 48 (96)
Q Consensus 40 laFvlDGIl 48 (96)
.+|||||..
T Consensus 80 pifVFDG~~ 88 (216)
T d1ul1x2 80 PVYVFDGKP 88 (216)
T ss_dssp EEEEECCSC
T ss_pred EEEEEcCCC
Confidence 489999954
No 6
>d1rxwa2 c.120.1.2 (A:3-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=10.49 E-value=17 Score=24.13 Aligned_cols=9 Identities=44% Similarity=0.578 Sum_probs=7.0
Q ss_pred hhhhhhhhh
Q 036574 40 LAFVLDGLY 48 (96)
Q Consensus 40 laFvlDGIl 48 (96)
.+|||||.-
T Consensus 73 pifVFDG~~ 81 (217)
T d1rxwa2 73 PVFVFDGEP 81 (217)
T ss_dssp EEEEECCSC
T ss_pred EEEEECCCC
Confidence 469999963
No 7
>d1kr4a_ d.58.5.2 (A:) Hypothetical protein TM1056 {Thermotoga maritima [TaxId: 2336]}
Probab=9.19 E-value=33 Score=21.14 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHH--HHHhhc--cchhhhhhhhhhh
Q 036574 15 GNYEQARQVVFRLLQ--FVAGSQ--PMNALAFVLDGLY 48 (96)
Q Consensus 15 ~d~~~ar~v~~rvl~--~va~~Q--PinglaFvlDGIl 48 (96)
.+.+.|+++++.++. ..++.| |+.+. |-|+|-.
T Consensus 16 ~~~~~A~~ia~~lv~~kLaACvni~~i~S~-Y~W~g~i 52 (110)
T d1kr4a_ 16 PNEEKALEIGRKLLEKRLIACFNAFEIRSG-YWWKGEI 52 (110)
T ss_dssp SSHHHHHHHHHHHHHTTSCSEEEEEEEEEE-EEETTEE
T ss_pred CCHHHHHHHHHHHHHcCeEEEEEeecccEE-eeehhhe
Confidence 467889999999988 444444 66655 7777644
No 8
>d1a77a2 c.120.1.2 (A:2-208) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=8.95 E-value=23 Score=23.34 Aligned_cols=8 Identities=38% Similarity=0.600 Sum_probs=6.4
Q ss_pred hhhhhhhh
Q 036574 40 LAFVLDGL 47 (96)
Q Consensus 40 laFvlDGI 47 (96)
.+|||||.
T Consensus 74 pifVFDG~ 81 (207)
T d1a77a2 74 PIWVFDGE 81 (207)
T ss_dssp EEEEECCC
T ss_pred EEEEECCC
Confidence 47999994
No 9
>d1j6ua2 c.59.1.1 (A:296-446) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}
Probab=7.73 E-value=72 Score=19.23 Aligned_cols=15 Identities=27% Similarity=0.616 Sum_probs=11.3
Q ss_pred hhhcccchHHHHHHH
Q 036574 47 LYYGVSDFEYAAYSM 61 (96)
Q Consensus 47 Il~GAgD~~YLA~a~ 61 (96)
+++|+||..+++...
T Consensus 129 l~~GaGdi~~~~~~~ 143 (151)
T d1j6ua2 129 LFVGAGDIIYSSRRF 143 (151)
T ss_dssp EEECSSTHHHHHHHH
T ss_pred EEEcCCCHHHHHHHH
Confidence 468999988877653
No 10
>d1mrza2 c.26.1.3 (A:2-158) FMN adenylyltransferase domain of bifunctional FAD synthetase {Thermotoga maritima [TaxId: 2336]}
Probab=7.28 E-value=37 Score=21.60 Aligned_cols=9 Identities=44% Similarity=0.748 Sum_probs=6.8
Q ss_pred hhhhhhhcc
Q 036574 43 VLDGLYYGV 51 (96)
Q Consensus 43 vlDGIl~GA 51 (96)
.|||++.|=
T Consensus 6 ~FDGvH~GH 14 (157)
T d1mrza2 6 VFDGVHIGH 14 (157)
T ss_dssp CCTTCCHHH
T ss_pred cccchhHHH
Confidence 478888874
Done!