Query 036577
Match_columns 470
No_of_seqs 706 out of 2741
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 03:23:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036577.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036577hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.1E-61 2.4E-66 486.9 50.2 377 85-470 420-796 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.4E-60 3E-65 479.0 49.2 385 79-470 445-854 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 3.3E-57 7.2E-62 451.9 36.5 373 80-470 96-469 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 8.2E-55 1.8E-59 444.8 37.7 368 79-470 230-632 (857)
5 PLN03081 pentatricopeptide (PP 100.0 2.3E-54 5E-59 431.5 36.4 366 80-469 167-534 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 5.8E-54 1.3E-58 438.6 36.9 370 81-470 131-596 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 5.9E-26 1.3E-30 237.2 45.0 360 80-458 508-867 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.5E-25 3.3E-30 234.0 46.3 352 84-454 546-897 (899)
9 PRK11788 tetratricopeptide rep 99.9 6.1E-23 1.3E-27 192.9 35.7 302 117-462 45-352 (389)
10 KOG4626 O-linked N-acetylgluco 99.9 2.4E-23 5.1E-28 187.6 28.6 369 73-464 118-490 (966)
11 TIGR00990 3a0801s09 mitochondr 99.9 1.8E-21 3.8E-26 192.5 44.9 372 71-457 127-571 (615)
12 PRK11788 tetratricopeptide rep 99.9 5.7E-23 1.2E-27 193.1 32.5 297 81-391 45-351 (389)
13 PRK15174 Vi polysaccharide exp 99.9 9.7E-21 2.1E-25 186.6 44.1 326 81-422 52-381 (656)
14 PRK15174 Vi polysaccharide exp 99.9 1.5E-20 3.2E-25 185.3 42.7 332 109-456 44-380 (656)
15 PRK11447 cellulose synthase su 99.9 2.8E-20 6E-25 195.7 45.7 370 78-461 276-745 (1157)
16 KOG4626 O-linked N-acetylgluco 99.9 3.7E-21 8E-26 173.6 30.7 338 106-462 115-454 (966)
17 PRK10049 pgaA outer membrane p 99.9 2.3E-18 4.9E-23 173.5 46.5 363 85-464 29-461 (765)
18 PRK11447 cellulose synthase su 99.9 4.8E-18 1E-22 179.0 48.7 256 84-353 160-525 (1157)
19 TIGR00990 3a0801s09 mitochondr 99.9 7.9E-18 1.7E-22 166.6 44.6 344 108-464 128-542 (615)
20 PRK14574 hmsH outer membrane p 99.9 1.5E-16 3.3E-21 157.6 44.8 192 262-456 301-512 (822)
21 PRK10049 pgaA outer membrane p 99.8 1.4E-16 3E-21 160.7 43.7 345 106-465 14-428 (765)
22 PRK09782 bacteriophage N4 rece 99.8 1E-14 2.2E-19 147.8 44.8 354 83-456 354-739 (987)
23 KOG4422 Uncharacterized conser 99.8 5.5E-15 1.2E-19 128.6 36.5 348 106-459 206-592 (625)
24 KOG2002 TPR-containing nuclear 99.8 1.4E-15 3.1E-20 144.8 32.5 390 71-467 307-755 (1018)
25 PRK09782 bacteriophage N4 rece 99.8 2.9E-14 6.3E-19 144.4 42.7 323 82-421 387-739 (987)
26 KOG2076 RNA polymerase III tra 99.8 1.9E-14 4.1E-19 136.4 38.2 363 83-456 151-554 (895)
27 PRK14574 hmsH outer membrane p 99.8 7.2E-14 1.6E-18 138.7 44.1 336 84-434 115-523 (822)
28 KOG2002 TPR-containing nuclear 99.7 1.8E-14 3.9E-19 137.5 31.7 368 82-457 281-709 (1018)
29 KOG2003 TPR repeat-containing 99.7 1.7E-14 3.7E-19 126.5 28.6 370 78-456 244-688 (840)
30 PRK10747 putative protoheme IX 99.7 6E-14 1.3E-18 130.8 33.9 284 120-421 97-389 (398)
31 TIGR00540 hemY_coli hemY prote 99.7 6.2E-14 1.3E-18 131.5 33.7 121 82-207 95-217 (409)
32 KOG4422 Uncharacterized conser 99.7 1.3E-13 2.9E-18 120.1 32.5 340 106-458 115-552 (625)
33 TIGR00540 hemY_coli hemY prote 99.7 1.1E-13 2.4E-18 129.8 34.1 291 153-456 95-398 (409)
34 PF13429 TPR_15: Tetratricopep 99.7 8.1E-17 1.8E-21 143.5 12.3 262 182-456 13-276 (280)
35 PRK10747 putative protoheme IX 99.7 1.2E-13 2.5E-18 128.9 33.8 284 154-456 96-389 (398)
36 PF13429 TPR_15: Tetratricopep 99.7 1.8E-16 3.9E-21 141.3 13.2 262 112-385 13-275 (280)
37 COG2956 Predicted N-acetylgluc 99.7 2.1E-13 4.6E-18 114.7 29.4 291 121-420 49-345 (389)
38 KOG0495 HAT repeat protein [RN 99.7 1.5E-12 3.2E-17 119.4 37.3 353 82-456 527-879 (913)
39 KOG2076 RNA polymerase III tra 99.7 5.6E-13 1.2E-17 126.6 35.5 332 112-455 144-510 (895)
40 KOG0547 Translocase of outer m 99.7 8.3E-13 1.8E-17 117.1 33.2 373 68-456 112-565 (606)
41 KOG1155 Anaphase-promoting com 99.7 1.3E-12 2.9E-17 115.1 33.5 294 149-456 234-535 (559)
42 KOG1915 Cell cycle control pro 99.7 3.1E-12 6.8E-17 113.1 35.2 364 82-457 84-536 (677)
43 KOG2003 TPR repeat-containing 99.7 1.1E-12 2.3E-17 115.4 31.3 357 71-443 276-709 (840)
44 KOG1126 DNA-binding cell divis 99.7 1.5E-13 3.2E-18 126.5 26.5 200 251-456 419-619 (638)
45 COG3071 HemY Uncharacterized e 99.7 3.7E-12 8.1E-17 110.5 33.1 290 121-420 98-388 (400)
46 KOG1126 DNA-binding cell divis 99.6 1.4E-13 3.1E-18 126.6 24.2 290 122-428 334-626 (638)
47 COG2956 Predicted N-acetylgluc 99.6 4.4E-12 9.6E-17 106.9 30.5 287 155-457 48-347 (389)
48 COG3071 HemY Uncharacterized e 99.6 8.4E-12 1.8E-16 108.4 32.9 293 154-462 96-395 (400)
49 KOG0495 HAT repeat protein [RN 99.6 1.3E-10 2.8E-15 107.0 40.5 357 84-456 419-781 (913)
50 KOG1155 Anaphase-promoting com 99.6 4.3E-11 9.4E-16 105.7 35.1 329 106-456 163-494 (559)
51 KOG1173 Anaphase-promoting com 99.6 2.4E-11 5.1E-16 110.0 31.3 375 76-468 146-527 (611)
52 KOG1915 Cell cycle control pro 99.6 3E-10 6.6E-15 100.8 36.1 185 265-455 378-583 (677)
53 PRK12370 invasion protein regu 99.6 4.6E-12 9.9E-17 123.4 27.9 251 121-387 275-535 (553)
54 PRK12370 invasion protein regu 99.5 2.5E-11 5.4E-16 118.3 29.8 268 139-422 253-535 (553)
55 TIGR02521 type_IV_pilW type IV 99.5 2.5E-11 5.4E-16 105.4 25.4 200 106-315 30-230 (234)
56 TIGR02521 type_IV_pilW type IV 99.5 6.1E-11 1.3E-15 102.9 26.9 202 251-456 29-231 (234)
57 KOG1129 TPR repeat-containing 99.5 6.4E-12 1.4E-16 106.0 19.0 233 216-462 227-461 (478)
58 PF12569 NARP1: NMDA receptor- 99.5 5.1E-10 1.1E-14 105.6 32.6 290 151-456 13-333 (517)
59 KOG1173 Anaphase-promoting com 99.5 1.7E-10 3.8E-15 104.6 28.0 287 139-439 241-533 (611)
60 KOG1129 TPR repeat-containing 99.5 2E-11 4.3E-16 103.1 20.3 229 181-421 227-457 (478)
61 KOG1840 Kinesin light chain [C 99.5 1.2E-10 2.6E-15 108.5 27.0 245 211-455 198-477 (508)
62 KOG0547 Translocase of outer m 99.4 1.8E-09 4E-14 96.3 31.2 338 108-461 116-534 (606)
63 KOG3785 Uncharacterized conser 99.4 2.9E-09 6.2E-14 91.3 28.5 266 183-466 157-497 (557)
64 PF12569 NARP1: NMDA receptor- 99.4 5.6E-09 1.2E-13 98.7 32.4 293 114-421 11-333 (517)
65 KOG1840 Kinesin light chain [C 99.4 1.7E-10 3.6E-15 107.6 21.7 244 107-350 199-477 (508)
66 KOG1156 N-terminal acetyltrans 99.4 2E-08 4.4E-13 92.9 34.6 362 75-459 45-470 (700)
67 KOG4318 Bicoid mRNA stability 99.4 9.5E-11 2.1E-15 111.4 19.9 276 128-445 11-288 (1088)
68 KOG4318 Bicoid mRNA stability 99.4 1.1E-10 2.4E-15 110.9 19.8 273 93-408 12-286 (1088)
69 KOG1174 Anaphase-promoting com 99.3 1.3E-08 2.9E-13 89.0 30.0 306 140-462 192-503 (564)
70 PF13041 PPR_2: PPR repeat fam 99.3 4.8E-12 1E-16 79.4 6.6 50 391-440 1-50 (50)
71 KOG2047 mRNA splicing factor [ 99.3 8.3E-08 1.8E-12 88.8 35.7 371 81-462 112-583 (835)
72 PRK11189 lipoprotein NlpI; Pro 99.3 4.7E-09 1E-13 93.9 27.5 218 86-318 41-266 (296)
73 COG3063 PilF Tfp pilus assembl 99.3 5.7E-09 1.2E-13 84.4 23.9 193 76-279 40-233 (250)
74 KOG1156 N-terminal acetyltrans 99.3 5.3E-08 1.2E-12 90.2 33.0 357 80-455 84-509 (700)
75 cd05804 StaR_like StaR_like; a 99.3 4.7E-08 1E-12 90.8 34.0 305 106-421 5-335 (355)
76 COG3063 PilF Tfp pilus assembl 99.3 9.3E-09 2E-13 83.2 24.0 197 180-386 38-235 (250)
77 KOG4162 Predicted calmodulin-b 99.3 2.8E-07 6.1E-12 87.3 36.6 341 106-457 322-783 (799)
78 PRK11189 lipoprotein NlpI; Pro 99.3 6.7E-09 1.4E-13 92.9 25.4 94 180-281 67-160 (296)
79 PF13041 PPR_2: PPR repeat fam 99.3 2.3E-11 4.9E-16 76.3 6.6 49 251-299 1-49 (50)
80 KOG1174 Anaphase-promoting com 99.3 3.8E-08 8.3E-13 86.3 28.2 287 121-422 210-500 (564)
81 KOG2376 Signal recognition par 99.2 3E-07 6.4E-12 84.5 33.8 364 82-457 23-487 (652)
82 cd05804 StaR_like StaR_like; a 99.2 2E-07 4.2E-12 86.6 33.9 307 141-457 5-336 (355)
83 KOG0548 Molecular co-chaperone 99.2 1.4E-07 2.9E-12 85.8 30.4 374 77-463 8-459 (539)
84 KOG0624 dsRNA-activated protei 99.2 2.8E-07 6.1E-12 79.0 30.4 296 78-388 45-371 (504)
85 KOG2047 mRNA splicing factor [ 99.2 2.8E-06 6E-11 79.1 37.8 394 50-460 47-509 (835)
86 PRK04841 transcriptional regul 99.1 3.7E-07 8.1E-12 95.8 35.6 342 115-457 382-760 (903)
87 KOG4162 Predicted calmodulin-b 99.1 4.4E-07 9.6E-12 86.0 31.0 259 160-422 462-783 (799)
88 KOG0624 dsRNA-activated protei 99.1 2.8E-06 6E-11 73.1 30.4 301 106-422 37-370 (504)
89 KOG4340 Uncharacterized conser 99.1 2.5E-07 5.5E-12 77.8 23.5 317 82-419 21-372 (459)
90 KOG0548 Molecular co-chaperone 99.1 8E-07 1.7E-11 80.9 28.3 236 180-439 227-470 (539)
91 PF04733 Coatomer_E: Coatomer 99.0 1.4E-08 3.1E-13 89.5 16.9 250 152-422 11-265 (290)
92 PF04733 Coatomer_E: Coatomer 99.0 7.2E-09 1.6E-13 91.3 14.5 247 83-352 13-265 (290)
93 KOG3785 Uncharacterized conser 99.0 1.6E-06 3.5E-11 74.8 26.5 319 83-431 163-497 (557)
94 KOG4340 Uncharacterized conser 99.0 3.5E-07 7.6E-12 77.0 21.8 294 81-386 54-374 (459)
95 PRK04841 transcriptional regul 99.0 1.8E-06 4E-11 90.7 32.8 313 111-423 413-761 (903)
96 KOG1125 TPR repeat-containing 99.0 2.3E-07 5E-12 85.1 22.3 251 117-379 295-563 (579)
97 KOG2376 Signal recognition par 99.0 2E-05 4.3E-10 72.9 34.3 148 303-454 356-517 (652)
98 KOG3617 WD40 and TPR repeat-co 98.9 1.8E-06 4E-11 82.4 27.2 337 81-453 738-1170(1416)
99 KOG1128 Uncharacterized conser 98.9 3.7E-07 8.1E-12 86.0 22.5 215 215-456 401-615 (777)
100 KOG1125 TPR repeat-containing 98.9 3.6E-07 7.7E-12 83.9 21.4 262 150-417 293-566 (579)
101 KOG1070 rRNA processing protei 98.9 1.2E-06 2.7E-11 88.1 26.5 218 93-321 1446-1667(1710)
102 PLN02789 farnesyltranstransfer 98.9 3.1E-06 6.7E-11 75.8 26.9 219 225-455 50-300 (320)
103 PLN02789 farnesyltranstransfer 98.9 3.5E-06 7.6E-11 75.4 26.7 131 271-405 126-267 (320)
104 KOG1914 mRNA cleavage and poly 98.9 5.1E-05 1.1E-09 69.6 35.0 367 84-456 32-500 (656)
105 KOG2053 Mitochondrial inherita 98.9 0.00011 2.3E-09 71.5 37.8 226 82-318 20-256 (932)
106 KOG1070 rRNA processing protei 98.9 3.6E-06 7.8E-11 84.9 27.6 234 211-450 1457-1693(1710)
107 KOG1128 Uncharacterized conser 98.9 2.9E-07 6.4E-12 86.7 18.7 221 174-421 395-615 (777)
108 KOG1127 TPR repeat-containing 98.8 2.4E-06 5.1E-11 83.4 23.5 185 85-281 472-658 (1238)
109 TIGR03302 OM_YfiO outer membra 98.8 1.7E-06 3.7E-11 75.0 21.1 189 250-457 30-232 (235)
110 PRK10370 formate-dependent nit 98.8 1.4E-06 3.1E-11 72.5 19.4 148 260-422 23-173 (198)
111 COG5010 TadD Flp pilus assembl 98.8 2.3E-06 5.1E-11 71.1 19.4 158 111-278 70-227 (257)
112 PRK14720 transcript cleavage f 98.8 1E-05 2.3E-10 80.7 27.2 240 104-404 28-268 (906)
113 COG5010 TadD Flp pilus assembl 98.8 3.3E-06 7.1E-11 70.2 19.6 156 292-451 70-225 (257)
114 PRK10370 formate-dependent nit 98.8 9.5E-07 2.1E-11 73.6 16.9 127 83-214 51-180 (198)
115 TIGR03302 OM_YfiO outer membra 98.8 2.3E-06 5.1E-11 74.2 20.2 100 106-206 32-144 (235)
116 PRK15179 Vi polysaccharide bio 98.7 2.1E-06 4.6E-11 84.7 21.5 168 66-242 51-218 (694)
117 PF12854 PPR_1: PPR repeat 98.7 2.2E-08 4.8E-13 56.2 4.0 32 423-454 2-33 (34)
118 KOG1127 TPR repeat-containing 98.7 4.3E-06 9.3E-11 81.6 21.3 369 72-452 493-908 (1238)
119 KOG1914 mRNA cleavage and poly 98.7 0.00013 2.8E-09 67.1 29.3 361 95-463 10-470 (656)
120 PF12854 PPR_1: PPR repeat 98.7 3.5E-08 7.6E-13 55.4 4.2 32 388-419 2-33 (34)
121 PRK15359 type III secretion sy 98.7 1.7E-06 3.7E-11 68.1 15.1 108 309-422 14-121 (144)
122 KOG0985 Vesicle coat protein c 98.7 9.4E-05 2E-09 72.8 29.0 188 187-418 1058-1245(1666)
123 PRK15179 Vi polysaccharide bio 98.7 2.5E-05 5.5E-10 77.2 26.2 182 208-405 82-267 (694)
124 KOG3081 Vesicle coat complex C 98.6 2.1E-05 4.5E-10 65.6 21.0 106 298-408 147-256 (299)
125 PRK14720 transcript cleavage f 98.6 2E-05 4.3E-10 78.8 24.5 154 252-439 115-268 (906)
126 COG4783 Putative Zn-dependent 98.6 7.5E-05 1.6E-09 67.8 25.6 117 298-417 316-432 (484)
127 PRK15359 type III secretion sy 98.6 7.5E-06 1.6E-10 64.5 17.0 121 274-401 14-134 (144)
128 KOG3081 Vesicle coat complex C 98.6 8.5E-05 1.8E-09 62.1 22.9 249 185-456 16-270 (299)
129 TIGR02552 LcrH_SycD type III s 98.6 3.6E-06 7.9E-11 65.9 14.7 117 93-215 5-121 (135)
130 KOG3616 Selective LIM binding 98.6 0.00027 5.8E-09 67.4 28.0 109 330-451 739-847 (1636)
131 KOG0985 Vesicle coat protein c 98.5 0.00031 6.7E-09 69.4 28.9 305 85-447 1062-1373(1666)
132 KOG3616 Selective LIM binding 98.5 7.1E-05 1.5E-09 71.2 23.4 109 219-346 739-847 (1636)
133 KOG3060 Uncharacterized conser 98.5 0.00015 3.2E-09 60.2 22.4 164 180-353 55-221 (289)
134 COG4783 Putative Zn-dependent 98.5 1.2E-05 2.5E-10 72.9 17.2 111 85-200 320-431 (484)
135 KOG3617 WD40 and TPR repeat-co 98.5 0.00012 2.7E-09 70.4 24.4 240 106-385 725-994 (1416)
136 TIGR02552 LcrH_SycD type III s 98.5 1.1E-05 2.4E-10 63.1 15.1 97 324-422 18-114 (135)
137 KOG3060 Uncharacterized conser 98.3 0.00068 1.5E-08 56.4 21.5 128 111-241 56-183 (289)
138 PF09976 TPR_21: Tetratricopep 98.3 8.5E-05 1.8E-09 58.7 15.7 126 326-454 15-144 (145)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 6.2E-05 1.4E-09 68.9 16.6 126 254-385 170-295 (395)
140 KOG2053 Mitochondrial inherita 98.3 0.0058 1.3E-07 60.0 31.5 225 118-355 20-258 (932)
141 PF09976 TPR_21: Tetratricopep 98.3 9.5E-05 2.1E-09 58.5 15.6 125 291-419 15-144 (145)
142 TIGR00756 PPR pentatricopeptid 98.2 2.2E-06 4.7E-11 48.9 4.4 33 430-462 2-34 (35)
143 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 8.5E-05 1.8E-09 68.1 16.1 123 291-419 172-294 (395)
144 KOG0550 Molecular chaperone (D 98.2 0.0011 2.4E-08 59.1 22.1 92 71-165 49-140 (486)
145 PF13812 PPR_3: Pentatricopept 98.1 5.1E-06 1.1E-10 46.9 4.5 32 430-461 3-34 (34)
146 TIGR00756 PPR pentatricopeptid 98.1 4.9E-06 1.1E-10 47.4 4.4 33 395-427 2-34 (35)
147 PF13812 PPR_3: Pentatricopept 98.1 7.9E-06 1.7E-10 46.2 4.4 33 394-426 2-34 (34)
148 cd00189 TPR Tetratricopeptide 98.0 0.00012 2.6E-09 52.8 11.5 94 361-456 3-96 (100)
149 CHL00033 ycf3 photosystem I as 98.0 0.00019 4.1E-09 58.4 13.4 117 85-202 13-138 (168)
150 PF12895 Apc3: Anaphase-promot 98.0 7.5E-06 1.6E-10 57.8 4.3 82 84-167 2-83 (84)
151 KOG0553 TPR repeat-containing 98.0 0.0002 4.4E-09 61.1 13.0 114 66-184 76-189 (304)
152 PF10037 MRP-S27: Mitochondria 98.0 0.00015 3.3E-09 66.7 13.3 123 209-335 63-185 (429)
153 PLN03088 SGT1, suppressor of 98.0 6.4E-05 1.4E-09 69.1 10.7 90 80-172 11-100 (356)
154 PRK15363 pathogenicity island 98.0 9.1E-05 2E-09 57.5 9.7 85 83-170 47-131 (157)
155 PRK10153 DNA-binding transcrip 98.0 0.00088 1.9E-08 64.4 18.5 61 394-456 421-481 (517)
156 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00029 6.4E-09 53.5 12.7 94 363-456 7-104 (119)
157 cd00189 TPR Tetratricopeptide 98.0 0.00018 3.9E-09 51.8 11.1 94 110-205 3-96 (100)
158 PRK02603 photosystem I assembl 98.0 0.0006 1.3E-08 55.7 15.0 89 105-194 33-123 (172)
159 PF10037 MRP-S27: Mitochondria 97.9 0.00022 4.8E-09 65.7 13.3 135 234-371 50-186 (429)
160 PLN03088 SGT1, suppressor of 97.9 0.00058 1.3E-08 62.8 15.3 89 332-422 11-99 (356)
161 PRK15363 pathogenicity island 97.9 0.0014 3E-08 51.1 14.7 95 326-422 38-132 (157)
162 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00073 1.6E-08 51.2 13.5 16 262-277 48-63 (119)
163 PF01535 PPR: PPR repeat; Int 97.9 2E-05 4.4E-10 43.3 3.5 29 430-458 2-30 (31)
164 PF05843 Suf: Suppressor of fo 97.9 0.00036 7.7E-09 61.9 13.1 128 326-456 4-135 (280)
165 KOG0553 TPR repeat-containing 97.8 0.0002 4.3E-09 61.1 10.4 102 330-435 88-189 (304)
166 COG4235 Cytochrome c biogenesi 97.8 0.0017 3.6E-08 56.0 16.0 130 86-221 137-269 (287)
167 PRK10866 outer membrane biogen 97.8 0.0084 1.8E-07 51.8 20.7 184 252-455 31-239 (243)
168 PF08579 RPM2: Mitochondrial r 97.8 0.00028 6.1E-09 50.8 9.4 80 110-189 28-116 (120)
169 PRK10866 outer membrane biogen 97.8 0.0028 6E-08 54.7 17.3 175 82-280 43-239 (243)
170 PRK02603 photosystem I assembl 97.8 0.0024 5.1E-08 52.2 15.8 86 290-376 37-124 (172)
171 PF01535 PPR: PPR repeat; Int 97.8 2.7E-05 5.9E-10 42.8 3.0 29 395-423 2-30 (31)
172 CHL00033 ycf3 photosystem I as 97.8 0.00068 1.5E-08 55.2 12.4 93 324-417 36-137 (168)
173 PF12895 Apc3: Anaphase-promot 97.8 7.9E-05 1.7E-09 52.5 5.9 81 190-278 2-83 (84)
174 COG4235 Cytochrome c biogenesi 97.8 0.0019 4.1E-08 55.7 15.0 127 304-435 138-267 (287)
175 PF08579 RPM2: Mitochondrial r 97.7 0.00082 1.8E-08 48.5 10.5 75 295-369 32-115 (120)
176 PF14938 SNAP: Soluble NSF att 97.7 0.0035 7.6E-08 55.8 17.3 119 183-317 100-225 (282)
177 PF14559 TPR_19: Tetratricopep 97.7 9.6E-05 2.1E-09 49.6 5.7 62 83-148 3-64 (68)
178 PF05843 Suf: Suppressor of fo 97.7 0.0019 4.1E-08 57.3 15.3 131 178-317 2-136 (280)
179 KOG0550 Molecular chaperone (D 97.7 0.012 2.7E-07 52.8 19.7 327 116-455 58-421 (486)
180 PRK10153 DNA-binding transcrip 97.7 0.0022 4.8E-08 61.7 16.6 135 105-242 335-483 (517)
181 COG3898 Uncharacterized membra 97.7 0.033 7.2E-07 49.7 30.2 282 155-458 97-393 (531)
182 PF13432 TPR_16: Tetratricopep 97.7 0.00023 5E-09 47.3 6.8 56 400-456 4-59 (65)
183 KOG1130 Predicted G-alpha GTPa 97.7 0.00068 1.5E-08 60.4 11.2 129 291-419 198-341 (639)
184 PF13414 TPR_11: TPR repeat; P 97.6 0.00025 5.5E-09 47.7 6.8 64 392-456 2-66 (69)
185 COG4700 Uncharacterized protei 97.6 0.022 4.8E-07 45.4 18.5 133 284-420 85-220 (251)
186 KOG1130 Predicted G-alpha GTPa 97.6 0.0007 1.5E-08 60.3 10.2 272 78-352 24-344 (639)
187 PF14938 SNAP: Soluble NSF att 97.5 0.0044 9.4E-08 55.2 15.0 95 361-456 117-224 (282)
188 PF12688 TPR_5: Tetratrico pep 97.5 0.0091 2E-07 44.8 14.3 91 330-420 8-102 (120)
189 PF13432 TPR_16: Tetratricopep 97.5 0.00017 3.6E-09 48.0 4.3 53 82-136 8-60 (65)
190 COG4700 Uncharacterized protei 97.5 0.033 7.3E-07 44.4 19.0 102 139-240 86-188 (251)
191 PF12688 TPR_5: Tetratrico pep 97.5 0.0066 1.4E-07 45.6 13.0 92 113-205 7-103 (120)
192 KOG2041 WD40 repeat protein [G 97.5 0.11 2.4E-06 50.1 25.5 316 105-442 690-1071(1189)
193 PF13525 YfiO: Outer membrane 97.4 0.022 4.9E-07 47.8 17.3 182 254-448 6-198 (203)
194 KOG2796 Uncharacterized conser 97.4 0.069 1.5E-06 45.1 21.2 132 255-387 179-315 (366)
195 PF14559 TPR_19: Tetratricopep 97.4 0.0011 2.3E-08 44.5 6.9 53 223-282 2-54 (68)
196 PF04840 Vps16_C: Vps16, C-ter 97.4 0.1 2.3E-06 46.9 24.7 110 290-419 179-288 (319)
197 KOG2796 Uncharacterized conser 97.3 0.074 1.6E-06 45.0 21.2 175 290-468 179-363 (366)
198 PF13525 YfiO: Outer membrane 97.3 0.024 5.2E-07 47.7 16.2 21 115-135 13-33 (203)
199 PF06239 ECSIT: Evolutionarily 97.3 0.0085 1.8E-07 49.2 12.4 86 287-372 46-152 (228)
200 PF03704 BTAD: Bacterial trans 97.3 0.015 3.3E-07 45.9 14.1 70 395-465 64-138 (146)
201 PF13414 TPR_11: TPR repeat; P 97.3 0.0013 2.9E-08 44.1 6.9 63 358-421 3-66 (69)
202 PRK10803 tol-pal system protei 97.3 0.0076 1.7E-07 52.5 13.1 97 326-422 146-246 (263)
203 PF07079 DUF1347: Protein of u 97.3 0.15 3.2E-06 46.8 33.3 79 374-454 437-521 (549)
204 PF13281 DUF4071: Domain of un 97.2 0.11 2.4E-06 47.3 20.2 189 229-422 120-334 (374)
205 PF06239 ECSIT: Evolutionarily 97.2 0.013 2.8E-07 48.2 12.7 89 320-408 44-153 (228)
206 KOG2280 Vacuolar assembly/sort 97.1 0.32 7E-06 47.5 23.5 108 325-451 686-793 (829)
207 COG4785 NlpI Lipoprotein NlpI, 97.1 0.078 1.7E-06 43.5 15.6 199 72-282 66-266 (297)
208 COG4105 ComL DNA uptake lipopr 97.1 0.15 3.2E-06 43.4 17.7 56 81-136 44-100 (254)
209 PRK10803 tol-pal system protei 97.1 0.015 3.3E-07 50.7 12.6 99 178-282 144-246 (263)
210 PF03704 BTAD: Bacterial trans 97.0 0.023 5.1E-07 44.9 12.8 70 325-395 64-138 (146)
211 PRK15331 chaperone protein Sic 97.0 0.0041 8.8E-08 48.8 7.8 86 82-170 48-133 (165)
212 PF13371 TPR_9: Tetratricopept 97.0 0.0036 7.7E-08 42.6 6.9 56 366-422 3-58 (73)
213 PF13281 DUF4071: Domain of un 97.0 0.28 6E-06 44.8 19.9 119 106-226 140-273 (374)
214 PF13424 TPR_12: Tetratricopep 97.0 0.0027 5.8E-08 43.9 5.9 63 394-456 6-74 (78)
215 PRK15331 chaperone protein Sic 97.0 0.089 1.9E-06 41.5 14.6 90 330-421 44-133 (165)
216 PF04840 Vps16_C: Vps16, C-ter 96.9 0.29 6.4E-06 44.1 25.8 279 109-451 2-285 (319)
217 COG3898 Uncharacterized membra 96.9 0.3 6.5E-06 44.0 30.8 81 120-204 133-215 (531)
218 PF13371 TPR_9: Tetratricopept 96.9 0.008 1.7E-07 40.8 7.7 54 402-456 4-57 (73)
219 KOG4555 TPR repeat-containing 96.9 0.013 2.9E-07 43.5 8.8 92 79-172 51-145 (175)
220 PF13424 TPR_12: Tetratricopep 96.9 0.002 4.4E-08 44.5 4.6 68 213-281 6-74 (78)
221 KOG1538 Uncharacterized conser 96.8 0.28 6.1E-06 47.0 18.9 166 197-386 620-801 (1081)
222 KOG0543 FKBP-type peptidyl-pro 96.8 0.022 4.9E-07 51.2 11.3 132 71-204 208-353 (397)
223 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.028 6E-07 51.9 11.7 65 105-171 73-141 (453)
224 COG3118 Thioredoxin domain-con 96.7 0.32 6.9E-06 42.2 17.1 51 223-280 145-195 (304)
225 COG5107 RNA14 Pre-mRNA 3'-end 96.7 0.5 1.1E-05 43.4 19.9 130 179-317 399-531 (660)
226 COG3118 Thioredoxin domain-con 96.7 0.22 4.8E-06 43.1 16.0 143 80-226 143-286 (304)
227 PF12921 ATP13: Mitochondrial 96.6 0.047 1E-06 41.5 10.5 51 249-299 48-99 (126)
228 PF12921 ATP13: Mitochondrial 96.5 0.046 1E-06 41.5 10.2 52 388-439 47-99 (126)
229 KOG2610 Uncharacterized conser 96.5 0.083 1.8E-06 46.3 12.7 155 83-240 115-275 (491)
230 PRK11906 transcriptional regul 96.5 0.25 5.4E-06 45.9 16.5 147 86-239 273-434 (458)
231 KOG1941 Acetylcholine receptor 96.5 0.56 1.2E-05 41.8 17.5 128 257-384 126-272 (518)
232 PF07079 DUF1347: Protein of u 96.4 0.74 1.6E-05 42.4 34.4 84 344-434 442-531 (549)
233 KOG1538 Uncharacterized conser 96.4 0.96 2.1E-05 43.6 19.5 202 123-352 616-846 (1081)
234 COG5107 RNA14 Pre-mRNA 3'-end 96.4 0.83 1.8E-05 42.1 31.7 129 324-456 398-530 (660)
235 PF10300 DUF3808: Protein of u 96.3 0.43 9.2E-06 45.9 17.8 163 291-456 191-375 (468)
236 COG1729 Uncharacterized protei 96.3 0.049 1.1E-06 46.6 10.1 98 107-206 142-244 (262)
237 KOG1585 Protein required for f 96.3 0.25 5.4E-06 41.5 13.5 54 257-311 194-250 (308)
238 PF04053 Coatomer_WDAD: Coatom 96.3 0.11 2.4E-06 49.1 13.3 155 84-279 274-428 (443)
239 PF04053 Coatomer_WDAD: Coatom 96.3 0.25 5.5E-06 46.7 15.7 160 220-419 269-428 (443)
240 PLN03098 LPA1 LOW PSII ACCUMUL 96.2 0.17 3.8E-06 46.8 13.5 66 174-241 72-141 (453)
241 KOG0543 FKBP-type peptidyl-pro 96.1 0.15 3.2E-06 46.1 12.5 97 323-421 257-354 (397)
242 PRK11906 transcriptional regul 96.1 0.86 1.9E-05 42.5 17.5 81 339-421 320-400 (458)
243 KOG1258 mRNA processing protei 96.0 1.6 3.5E-05 41.9 30.4 115 88-205 62-179 (577)
244 PF10300 DUF3808: Protein of u 96.0 0.36 7.8E-06 46.4 15.3 167 217-386 193-375 (468)
245 COG4105 ComL DNA uptake lipopr 95.9 0.93 2E-05 38.7 20.8 176 260-455 41-231 (254)
246 PF13512 TPR_18: Tetratricopep 95.8 0.49 1.1E-05 36.5 12.5 52 370-421 22-75 (142)
247 KOG1585 Protein required for f 95.8 0.99 2.2E-05 38.1 16.1 107 107-239 31-137 (308)
248 KOG4555 TPR repeat-containing 95.8 0.28 6.1E-06 36.7 10.5 91 332-423 52-145 (175)
249 KOG2610 Uncharacterized conser 95.8 0.34 7.4E-06 42.7 12.6 154 264-420 114-274 (491)
250 KOG2114 Vacuolar assembly/sort 95.7 2.6 5.6E-05 42.2 21.5 54 397-454 709-762 (933)
251 COG1729 Uncharacterized protei 95.7 0.26 5.6E-06 42.3 11.5 99 214-317 144-244 (262)
252 smart00299 CLH Clathrin heavy 95.7 0.77 1.7E-05 35.8 15.6 42 294-336 13-54 (140)
253 KOG1941 Acetylcholine receptor 95.7 0.35 7.5E-06 43.1 12.4 207 144-351 45-274 (518)
254 KOG2041 WD40 repeat protein [G 95.6 2.6 5.6E-05 41.3 23.1 62 358-419 1021-1083(1189)
255 PF13512 TPR_18: Tetratricopep 95.6 0.42 9.2E-06 36.8 11.3 79 110-188 13-93 (142)
256 PF13431 TPR_17: Tetratricopep 95.6 0.017 3.6E-07 32.2 2.8 32 94-127 2-33 (34)
257 PF13428 TPR_14: Tetratricopep 95.5 0.039 8.4E-07 33.0 4.6 39 109-148 3-41 (44)
258 PF08631 SPO22: Meiosis protei 95.5 1.7 3.6E-05 38.7 24.3 166 188-357 4-191 (278)
259 PF09205 DUF1955: Domain of un 95.5 0.75 1.6E-05 34.7 14.3 59 295-354 93-151 (161)
260 COG4649 Uncharacterized protei 95.5 0.99 2.2E-05 35.9 13.1 122 119-240 70-195 (221)
261 KOG2280 Vacuolar assembly/sort 95.5 3 6.5E-05 41.2 24.5 106 293-417 689-794 (829)
262 PF08631 SPO22: Meiosis protei 95.3 2 4.3E-05 38.2 26.2 226 223-455 4-273 (278)
263 PF09205 DUF1955: Domain of un 95.1 1 2.2E-05 34.0 14.5 65 394-459 87-151 (161)
264 COG0457 NrfG FOG: TPR repeat [ 95.0 1.9 4.2E-05 36.5 29.5 225 190-422 36-265 (291)
265 PF04184 ST7: ST7 protein; In 94.7 4 8.6E-05 38.5 18.0 63 359-421 260-323 (539)
266 COG0457 NrfG FOG: TPR repeat [ 94.7 2.4 5.2E-05 35.9 29.6 223 156-387 37-265 (291)
267 PF09613 HrpB1_HrpK: Bacterial 94.7 1.2 2.7E-05 35.1 11.7 51 84-136 23-73 (160)
268 COG3629 DnrI DNA-binding trans 94.6 0.52 1.1E-05 41.2 10.5 78 359-437 154-236 (280)
269 PF13428 TPR_14: Tetratricopep 94.6 0.15 3.3E-06 30.3 5.3 24 363-386 6-29 (44)
270 KOG3941 Intermediate in Toll s 94.1 1.1 2.5E-05 38.6 11.2 104 105-227 65-173 (406)
271 COG3629 DnrI DNA-binding trans 94.1 0.5 1.1E-05 41.3 9.4 73 393-466 153-230 (280)
272 PF13170 DUF4003: Protein of u 94.1 4.1 8.9E-05 36.4 17.8 128 271-400 80-224 (297)
273 KOG1920 IkappaB kinase complex 94.0 9.2 0.0002 40.2 21.4 31 174-205 788-820 (1265)
274 KOG3941 Intermediate in Toll s 94.0 0.57 1.2E-05 40.3 9.1 89 251-339 65-174 (406)
275 KOG2114 Vacuolar assembly/sort 93.7 8.6 0.00019 38.8 18.2 47 264-311 408-454 (933)
276 PF13176 TPR_7: Tetratricopept 93.7 0.17 3.8E-06 28.5 4.1 23 396-418 2-24 (36)
277 PF00515 TPR_1: Tetratricopept 93.7 0.18 4E-06 27.8 4.2 27 430-456 3-29 (34)
278 smart00299 CLH Clathrin heavy 93.6 2.7 5.8E-05 32.7 16.1 24 113-136 13-36 (140)
279 PF13176 TPR_7: Tetratricopept 93.5 0.21 4.5E-06 28.2 4.2 27 430-456 1-27 (36)
280 PF10602 RPN7: 26S proteasome 93.4 1.4 3E-05 36.0 10.4 17 224-240 125-141 (177)
281 PF04184 ST7: ST7 protein; In 93.3 7.4 0.00016 36.8 20.3 57 328-384 264-321 (539)
282 PF09613 HrpB1_HrpK: Bacterial 93.2 3.4 7.4E-05 32.7 12.4 112 331-449 18-130 (160)
283 PF10602 RPN7: 26S proteasome 93.2 1.5 3.2E-05 35.8 10.3 97 359-455 37-140 (177)
284 PF07035 Mic1: Colon cancer-as 93.2 3.7 8E-05 32.9 15.1 135 309-457 15-149 (167)
285 PF07719 TPR_2: Tetratricopept 93.1 0.26 5.7E-06 27.1 4.2 27 430-456 3-29 (34)
286 COG4649 Uncharacterized protei 93.1 3.8 8.3E-05 32.7 14.0 133 289-422 60-196 (221)
287 KOG1920 IkappaB kinase complex 93.0 14 0.0003 39.0 21.9 78 260-349 946-1025(1265)
288 KOG2066 Vacuolar assembly/sort 92.9 11 0.00024 37.7 24.3 99 84-189 369-467 (846)
289 KOG0276 Vesicle coat complex C 92.7 2.8 6E-05 40.4 12.3 100 299-419 648-747 (794)
290 PF13170 DUF4003: Protein of u 92.6 7.5 0.00016 34.8 19.7 132 304-437 78-226 (297)
291 PF07035 Mic1: Colon cancer-as 92.3 4.9 0.00011 32.2 15.8 27 132-158 19-45 (167)
292 KOG1550 Extracellular protein 92.2 13 0.00028 36.8 27.0 274 158-458 228-539 (552)
293 KOG0276 Vesicle coat complex C 92.1 2.7 5.9E-05 40.4 11.4 134 107-279 614-747 (794)
294 KOG1258 mRNA processing protei 91.9 13 0.00028 36.1 29.2 305 82-414 90-421 (577)
295 KOG2396 HAT (Half-A-TPR) repea 91.6 12 0.00027 35.4 29.9 99 355-456 456-558 (568)
296 PF04097 Nic96: Nup93/Nic96; 91.3 18 0.00038 36.5 19.4 47 107-155 112-158 (613)
297 PF13431 TPR_17: Tetratricopep 91.2 0.3 6.4E-06 27.1 2.8 24 250-273 10-33 (34)
298 PF10345 Cohesin_load: Cohesin 90.7 20 0.00044 36.1 31.9 198 140-349 28-251 (608)
299 KOG4570 Uncharacterized conser 90.4 5 0.00011 35.4 10.5 102 283-386 59-163 (418)
300 COG1747 Uncharacterized N-term 90.2 17 0.00038 34.6 21.8 92 289-385 67-158 (711)
301 KOG4648 Uncharacterized conser 90.2 1.5 3.4E-05 38.9 7.5 98 74-176 100-197 (536)
302 PRK15180 Vi polysaccharide bio 90.1 5.4 0.00012 37.4 11.1 86 334-421 334-419 (831)
303 KOG4234 TPR repeat-containing 89.9 5.8 0.00013 32.6 9.8 92 330-422 102-197 (271)
304 PF13374 TPR_10: Tetratricopep 89.8 0.95 2.1E-05 26.1 4.5 26 395-420 4-29 (42)
305 PF11207 DUF2989: Protein of u 89.8 3.9 8.5E-05 33.7 9.1 20 322-341 177-196 (203)
306 PF11207 DUF2989: Protein of u 89.6 6.3 0.00014 32.5 10.1 75 373-448 121-198 (203)
307 PF00515 TPR_1: Tetratricopept 89.6 1.2 2.6E-05 24.4 4.4 29 394-422 2-30 (34)
308 KOG1550 Extracellular protein 89.5 23 0.00051 35.1 26.6 77 338-422 454-538 (552)
309 COG4785 NlpI Lipoprotein NlpI, 89.3 12 0.00025 31.3 17.3 179 225-422 78-266 (297)
310 PF13374 TPR_10: Tetratricopep 89.0 1.1 2.3E-05 25.9 4.3 28 108-135 3-30 (42)
311 PF07719 TPR_2: Tetratricopept 89.0 1.2 2.6E-05 24.3 4.2 28 395-422 3-30 (34)
312 PF13181 TPR_8: Tetratricopept 88.9 0.81 1.8E-05 25.1 3.5 27 430-456 3-29 (34)
313 PF00637 Clathrin: Region in C 88.9 0.57 1.2E-05 36.7 3.8 52 114-165 14-65 (143)
314 TIGR02561 HrpB1_HrpK type III 88.7 9.9 0.00021 29.6 11.1 53 334-388 21-74 (153)
315 COG2976 Uncharacterized protei 88.5 13 0.00027 30.6 13.9 92 365-458 96-189 (207)
316 PRK11619 lytic murein transgly 88.4 30 0.00066 35.0 29.2 116 337-455 255-373 (644)
317 KOG4570 Uncharacterized conser 88.2 9.1 0.0002 33.9 10.6 106 207-317 59-164 (418)
318 COG3947 Response regulator con 88.2 17 0.00038 31.9 15.6 71 395-466 281-356 (361)
319 KOG4234 TPR repeat-containing 88.1 5.3 0.00011 32.8 8.5 96 75-171 99-197 (271)
320 PF02259 FAT: FAT domain; Int 88.0 22 0.00047 32.8 25.0 65 252-316 145-212 (352)
321 PF07575 Nucleopor_Nup85: Nup8 88.0 31 0.00066 34.5 17.1 62 322-385 404-465 (566)
322 TIGR02561 HrpB1_HrpK type III 88.0 11 0.00024 29.4 11.1 50 84-135 23-72 (153)
323 KOG4642 Chaperone-dependent E3 87.7 16 0.00035 31.0 12.8 127 72-202 11-142 (284)
324 cd00923 Cyt_c_Oxidase_Va Cytoc 87.2 5.5 0.00012 28.3 7.1 45 271-315 25-69 (103)
325 COG4455 ImpE Protein of avirul 86.6 4.5 9.8E-05 33.7 7.5 75 111-186 5-81 (273)
326 PF02284 COX5A: Cytochrome c o 86.6 6 0.00013 28.4 7.1 47 271-317 28-74 (108)
327 PF08424 NRDE-2: NRDE-2, neces 86.4 26 0.00056 31.9 17.2 146 93-242 7-184 (321)
328 KOG0890 Protein kinase of the 86.3 72 0.0016 36.9 23.1 62 358-422 1670-1731(2382)
329 PF00637 Clathrin: Region in C 85.9 0.32 7E-06 38.1 0.8 84 329-419 13-96 (143)
330 cd00923 Cyt_c_Oxidase_Va Cytoc 85.9 8.2 0.00018 27.5 7.4 45 341-385 25-69 (103)
331 PF13929 mRNA_stabil: mRNA sta 85.8 24 0.00052 31.1 13.7 113 269-381 144-261 (292)
332 PF06552 TOM20_plant: Plant sp 85.7 7.6 0.00017 31.4 8.2 95 87-187 7-123 (186)
333 KOG4648 Uncharacterized conser 85.4 7.6 0.00016 34.7 8.8 90 185-282 105-194 (536)
334 COG3947 Response regulator con 85.2 26 0.00056 30.9 15.1 40 88-130 150-189 (361)
335 COG2909 MalT ATP-dependent tra 85.0 50 0.0011 34.0 29.2 320 125-453 299-684 (894)
336 PF13181 TPR_8: Tetratricopept 84.8 3.1 6.7E-05 22.6 4.4 27 395-421 3-29 (34)
337 COG4455 ImpE Protein of avirul 84.7 9.4 0.0002 31.9 8.4 76 215-297 4-81 (273)
338 PF02259 FAT: FAT domain; Int 84.6 33 0.00071 31.6 24.7 67 286-352 144-213 (352)
339 PF13174 TPR_6: Tetratricopept 84.6 1.7 3.8E-05 23.4 3.2 23 434-456 6-28 (33)
340 KOG3364 Membrane protein invol 84.2 14 0.00031 28.2 8.5 64 357-421 31-99 (149)
341 PF13174 TPR_6: Tetratricopept 84.1 1.7 3.8E-05 23.4 3.1 25 398-422 5-29 (33)
342 PF06552 TOM20_plant: Plant sp 83.3 10 0.00022 30.7 7.9 78 86-173 50-138 (186)
343 PRK09687 putative lyase; Provi 83.0 34 0.00073 30.5 28.5 217 106-351 36-262 (280)
344 COG2976 Uncharacterized protei 82.9 25 0.00054 28.9 13.9 116 306-423 70-189 (207)
345 COG2909 MalT ATP-dependent tra 82.8 62 0.0013 33.4 28.4 199 263-461 425-651 (894)
346 KOG1464 COP9 signalosome, subu 82.8 31 0.00067 29.9 17.1 188 83-276 39-254 (440)
347 PF10579 Rapsyn_N: Rapsyn N-te 82.7 4.9 0.00011 27.3 5.1 47 405-451 18-66 (80)
348 PRK09687 putative lyase; Provi 82.5 35 0.00076 30.3 28.4 136 287-438 141-277 (280)
349 TIGR03504 FimV_Cterm FimV C-te 82.2 3.7 7.9E-05 24.4 4.0 23 399-421 5-27 (44)
350 TIGR03504 FimV_Cterm FimV C-te 82.0 3.1 6.7E-05 24.7 3.6 26 433-458 4-29 (44)
351 KOG0890 Protein kinase of the 81.5 1.1E+02 0.0024 35.5 26.3 314 112-457 1388-1731(2382)
352 PF07721 TPR_4: Tetratricopept 80.7 2.8 6.1E-05 21.4 2.8 18 434-451 7-24 (26)
353 PF07163 Pex26: Pex26 protein; 79.8 30 0.00065 30.3 10.0 88 113-200 89-181 (309)
354 PF02284 COX5A: Cytochrome c o 79.8 20 0.00044 25.8 9.1 43 309-351 31-73 (108)
355 COG1747 Uncharacterized N-term 79.3 61 0.0013 31.1 24.6 62 176-240 65-126 (711)
356 PF13929 mRNA_stabil: mRNA sta 79.3 44 0.00096 29.5 15.8 134 226-364 142-284 (292)
357 KOG2063 Vacuolar assembly/sort 79.1 87 0.0019 32.8 19.4 116 109-224 506-638 (877)
358 COG5159 RPN6 26S proteasome re 78.9 45 0.00097 29.3 11.2 23 433-455 130-152 (421)
359 PRK11619 lytic murein transgly 78.1 83 0.0018 32.0 33.5 226 225-464 254-512 (644)
360 PF07163 Pex26: Pex26 protein; 77.5 35 0.00075 29.9 9.7 87 219-311 90-181 (309)
361 smart00028 TPR Tetratricopepti 77.0 5.3 0.00011 20.5 3.6 25 431-455 4-28 (34)
362 PF14853 Fis1_TPR_C: Fis1 C-te 76.8 6.7 0.00014 24.4 4.1 33 399-433 7-39 (53)
363 PF08424 NRDE-2: NRDE-2, neces 76.6 61 0.0013 29.6 18.9 99 285-385 16-129 (321)
364 KOG1308 Hsp70-interacting prot 75.8 1.8 4E-05 38.5 1.9 86 85-173 128-213 (377)
365 smart00386 HAT HAT (Half-A-TPR 75.8 8.5 0.00019 20.3 4.2 30 85-116 1-30 (33)
366 KOG0991 Replication factor C, 75.8 50 0.0011 28.2 12.0 104 332-439 168-283 (333)
367 COG0790 FOG: TPR repeat, SEL1 75.0 62 0.0013 28.9 23.6 186 266-464 54-273 (292)
368 KOG4507 Uncharacterized conser 73.9 17 0.00037 35.2 7.7 86 336-422 620-705 (886)
369 KOG0376 Serine-threonine phosp 71.7 6.8 0.00015 36.8 4.6 104 79-187 12-115 (476)
370 KOG1464 COP9 signalosome, subu 71.5 69 0.0015 27.9 16.7 199 250-449 23-252 (440)
371 KOG2471 TPR repeat-containing 71.5 98 0.0021 29.7 12.6 38 402-440 344-381 (696)
372 PF10579 Rapsyn_N: Rapsyn N-te 71.2 16 0.00035 24.9 5.0 46 370-415 18-65 (80)
373 KOG0686 COP9 signalosome, subu 71.1 90 0.002 29.1 14.3 165 144-316 152-332 (466)
374 PF14561 TPR_20: Tetratricopep 71.0 34 0.00074 24.2 8.9 65 92-158 9-74 (90)
375 KOG4279 Serine/threonine prote 70.6 1.1E+02 0.0025 31.0 12.4 117 230-352 181-316 (1226)
376 PHA02875 ankyrin repeat protei 70.6 50 0.0011 31.3 10.6 211 116-359 8-231 (413)
377 KOG4507 Uncharacterized conser 70.5 32 0.0007 33.5 8.6 104 118-223 618-721 (886)
378 PF09986 DUF2225: Uncharacteri 70.1 67 0.0015 27.2 10.3 24 434-457 171-194 (214)
379 PF14689 SPOB_a: Sensor_kinase 70.0 13 0.00029 24.0 4.5 23 433-455 28-50 (62)
380 KOG2396 HAT (Half-A-TPR) repea 69.4 1.1E+02 0.0024 29.4 18.8 247 86-352 297-559 (568)
381 TIGR02508 type_III_yscG type I 69.3 37 0.00081 24.5 6.7 51 186-242 48-98 (115)
382 PRK10941 hypothetical protein; 69.1 36 0.00078 30.0 8.3 61 110-171 184-244 (269)
383 TIGR02508 type_III_yscG type I 68.5 42 0.00091 24.2 8.8 87 86-181 20-106 (115)
384 KOG2066 Vacuolar assembly/sort 67.5 1.5E+02 0.0033 30.3 20.6 102 114-224 363-467 (846)
385 PF11846 DUF3366: Domain of un 67.2 31 0.00067 28.6 7.4 31 390-420 141-171 (193)
386 cd08819 CARD_MDA5_2 Caspase ac 65.5 44 0.00095 23.4 6.5 65 90-161 21-85 (88)
387 COG0790 FOG: TPR repeat, SEL1 65.5 1E+02 0.0022 27.5 25.4 183 224-425 53-269 (292)
388 PF11848 DUF3368: Domain of un 64.2 13 0.00028 22.5 3.3 32 404-435 13-44 (48)
389 PRK15180 Vi polysaccharide bio 64.2 1.4E+02 0.003 28.6 26.1 121 83-207 301-421 (831)
390 cd00280 TRFH Telomeric Repeat 63.4 61 0.0013 26.5 7.7 49 86-135 84-139 (200)
391 PF12862 Apc5: Anaphase-promot 63.3 25 0.00055 25.0 5.4 54 83-136 10-70 (94)
392 KOG4077 Cytochrome c oxidase, 62.9 63 0.0014 24.5 7.1 47 271-317 67-113 (149)
393 KOG4642 Chaperone-dependent E3 62.3 1E+02 0.0022 26.5 11.1 101 298-402 20-126 (284)
394 PF14689 SPOB_a: Sensor_kinase 62.3 24 0.00051 22.8 4.5 30 392-421 22-51 (62)
395 PF04190 DUF410: Protein of un 61.5 1.1E+02 0.0025 26.8 16.9 80 357-456 89-169 (260)
396 PF12862 Apc5: Anaphase-promot 60.8 57 0.0012 23.1 7.0 22 400-421 48-69 (94)
397 PF08311 Mad3_BUB1_I: Mad3/BUB 60.8 58 0.0013 24.8 7.2 75 374-453 49-124 (126)
398 KOG1114 Tripeptidyl peptidase 60.4 2.3E+02 0.005 29.9 13.7 167 83-268 1087-1282(1304)
399 KOG4077 Cytochrome c oxidase, 60.2 43 0.00093 25.3 5.9 47 376-422 67-113 (149)
400 PF09670 Cas_Cas02710: CRISPR- 60.1 1.4E+02 0.003 28.1 10.9 57 114-171 138-198 (379)
401 KOG2908 26S proteasome regulat 60.1 1.3E+02 0.0029 27.3 9.9 57 330-386 82-143 (380)
402 PF11663 Toxin_YhaV: Toxin wit 59.6 12 0.00025 28.6 3.0 17 125-141 113-129 (140)
403 PRK10564 maltose regulon perip 59.1 22 0.00048 31.5 5.1 40 108-147 258-297 (303)
404 KOG0686 COP9 signalosome, subu 59.1 1.6E+02 0.0034 27.6 14.7 167 107-282 150-333 (466)
405 PF11848 DUF3368: Domain of un 59.1 38 0.00082 20.5 5.2 30 370-399 14-43 (48)
406 KOG4279 Serine/threonine prote 58.4 2.2E+02 0.0048 29.1 12.5 121 89-214 181-322 (1226)
407 PRK13342 recombination factor 58.2 1.7E+02 0.0037 27.8 18.8 31 267-297 244-274 (413)
408 PF10345 Cohesin_load: Cohesin 58.0 2.2E+02 0.0047 28.9 36.7 193 87-280 37-252 (608)
409 KOG1308 Hsp70-interacting prot 57.4 7.9 0.00017 34.7 2.2 120 333-456 124-243 (377)
410 KOG1839 Uncharacterized protei 57.0 1.6E+02 0.0034 32.1 11.4 150 81-232 942-1119(1236)
411 PF04910 Tcf25: Transcriptiona 56.6 1.7E+02 0.0037 27.2 19.3 57 219-281 110-167 (360)
412 PF11846 DUF3366: Domain of un 56.4 66 0.0014 26.6 7.5 32 355-386 141-172 (193)
413 KOG3807 Predicted membrane pro 56.1 92 0.002 28.1 8.3 114 86-211 231-345 (556)
414 KOG2908 26S proteasome regulat 55.5 1.6E+02 0.0036 26.7 10.1 77 292-368 79-166 (380)
415 KOG1839 Uncharacterized protei 55.3 1.5E+02 0.0032 32.3 10.9 160 116-275 941-1121(1236)
416 PF09986 DUF2225: Uncharacteri 55.0 1.3E+02 0.0029 25.5 11.4 26 397-422 169-194 (214)
417 PF09670 Cas_Cas02710: CRISPR- 54.7 1.9E+02 0.0041 27.2 12.8 55 297-352 140-198 (379)
418 PF04097 Nic96: Nup93/Nic96; 54.4 2.5E+02 0.0054 28.5 17.4 88 295-387 265-356 (613)
419 KOG0128 RNA-binding protein SA 53.2 2.8E+02 0.0061 28.7 30.8 97 106-205 112-218 (881)
420 cd00280 TRFH Telomeric Repeat 52.7 1.3E+02 0.0028 24.7 10.6 20 186-205 120-139 (200)
421 PF14853 Fis1_TPR_C: Fis1 C-te 51.7 57 0.0012 20.3 5.1 23 365-387 8-30 (53)
422 PRK10941 hypothetical protein; 51.7 1.7E+02 0.0037 25.8 11.0 59 363-422 186-244 (269)
423 KOG0551 Hsp90 co-chaperone CNS 51.6 67 0.0015 29.0 6.7 98 70-168 80-179 (390)
424 PRK09857 putative transposase; 51.4 1.6E+02 0.0036 26.4 9.5 64 362-426 210-273 (292)
425 PF11663 Toxin_YhaV: Toxin wit 51.3 26 0.00055 26.8 3.7 31 153-185 106-136 (140)
426 KOG0991 Replication factor C, 50.9 1.6E+02 0.0035 25.3 13.3 98 187-287 169-272 (333)
427 KOG4567 GTPase-activating prot 50.6 1.2E+02 0.0027 27.1 8.1 70 343-417 263-342 (370)
428 KOG0687 26S proteasome regulat 50.6 2E+02 0.0042 26.2 15.0 97 253-351 104-209 (393)
429 PF02184 HAT: HAT (Half-A-TPR) 50.3 27 0.00058 19.1 2.7 22 443-466 2-23 (32)
430 PF09477 Type_III_YscG: Bacter 49.7 1E+02 0.0022 22.6 8.7 79 86-172 21-99 (116)
431 PF11817 Foie-gras_1: Foie gra 49.6 94 0.002 27.0 7.6 57 182-238 183-244 (247)
432 PF11817 Foie-gras_1: Foie gra 49.2 1.1E+02 0.0024 26.6 8.0 57 398-454 183-244 (247)
433 PF07575 Nucleopor_Nup85: Nup8 48.9 2.1E+02 0.0046 28.6 10.9 76 273-350 390-465 (566)
434 PF14669 Asp_Glu_race_2: Putat 48.5 1.6E+02 0.0034 24.4 15.4 55 293-347 137-205 (233)
435 KOG0687 26S proteasome regulat 48.3 2.1E+02 0.0046 25.9 14.0 23 361-383 107-129 (393)
436 COG4976 Predicted methyltransf 48.2 81 0.0017 26.9 6.4 58 82-142 6-63 (287)
437 PF10366 Vps39_1: Vacuolar sor 48.1 1.1E+02 0.0024 22.5 7.1 27 395-421 41-67 (108)
438 COG0735 Fur Fe2+/Zn2+ uptake r 47.9 1.3E+02 0.0029 23.5 8.0 50 345-395 8-57 (145)
439 PRK10564 maltose regulon perip 47.8 41 0.00089 29.9 4.9 28 361-388 260-287 (303)
440 KOG4814 Uncharacterized conser 47.0 93 0.002 30.9 7.4 90 80-170 363-456 (872)
441 KOG3364 Membrane protein invol 46.1 83 0.0018 24.3 5.6 51 86-136 50-100 (149)
442 KOG1586 Protein required for f 45.3 2E+02 0.0044 24.8 21.2 260 125-435 3-272 (288)
443 PF09477 Type_III_YscG: Bacter 45.2 1.2E+02 0.0027 22.3 8.7 79 157-242 21-99 (116)
444 PF10475 DUF2450: Protein of u 45.1 2.3E+02 0.005 25.4 10.0 116 293-419 103-223 (291)
445 KOG4521 Nuclear pore complex, 44.5 4.6E+02 0.0099 28.7 15.7 121 254-380 984-1124(1480)
446 PRK09857 putative transposase; 44.5 2E+02 0.0043 25.9 8.9 26 363-388 245-270 (292)
447 PF04910 Tcf25: Transcriptiona 44.4 2.7E+02 0.0058 26.0 19.0 57 365-421 110-167 (360)
448 COG5108 RPO41 Mitochondrial DN 43.9 1.9E+02 0.0041 29.1 9.0 46 79-124 36-82 (1117)
449 KOG4567 GTPase-activating prot 43.9 1.8E+02 0.0038 26.2 8.0 72 162-238 263-344 (370)
450 COG5108 RPO41 Mitochondrial DN 43.5 2.3E+02 0.005 28.5 9.4 90 293-385 33-130 (1117)
451 PF04034 DUF367: Domain of unk 43.0 1.5E+02 0.0032 22.6 6.7 59 393-454 66-125 (127)
452 smart00777 Mad3_BUB1_I Mad3/BU 42.5 1.3E+02 0.0027 23.0 6.3 74 87-166 49-123 (125)
453 KOG0292 Vesicle coat complex C 41.7 4.4E+02 0.0096 27.7 24.3 132 81-243 653-784 (1202)
454 KOG2659 LisH motif-containing 41.4 2.3E+02 0.0049 24.2 8.9 99 285-385 23-130 (228)
455 KOG0292 Vesicle coat complex C 40.7 2.9E+02 0.0062 29.0 9.8 159 258-458 625-783 (1202)
456 KOG0376 Serine-threonine phosp 39.4 1.1E+02 0.0023 29.3 6.5 51 153-205 15-66 (476)
457 PF09454 Vps23_core: Vps23 cor 38.9 1E+02 0.0022 20.2 4.6 47 107-154 8-54 (65)
458 PRK14700 recombination factor 38.9 2.9E+02 0.0063 24.8 18.5 83 255-337 125-215 (300)
459 PF13762 MNE1: Mitochondrial s 38.4 1.9E+02 0.0042 22.6 11.1 80 326-405 42-127 (145)
460 cd08819 CARD_MDA5_2 Caspase ac 38.4 1.4E+02 0.003 21.0 6.9 12 338-349 51-62 (88)
461 PHA02875 ankyrin repeat protei 38.3 3.5E+02 0.0076 25.6 15.5 69 164-236 17-89 (413)
462 cd07153 Fur_like Ferric uptake 37.7 1.1E+02 0.0024 22.6 5.5 48 364-411 6-53 (116)
463 PF03745 DUF309: Domain of unk 37.3 1.2E+02 0.0025 19.7 5.7 47 334-380 10-61 (62)
464 PRK08691 DNA polymerase III su 37.2 4.9E+02 0.011 26.9 11.0 86 339-427 180-279 (709)
465 PF00244 14-3-3: 14-3-3 protei 37.2 2.7E+02 0.006 24.0 9.8 58 258-315 6-64 (236)
466 KOG2659 LisH motif-containing 36.9 2.7E+02 0.0058 23.8 9.5 20 149-168 71-90 (228)
467 PF12926 MOZART2: Mitotic-spin 36.7 1.5E+02 0.0032 20.8 7.8 41 128-168 29-69 (88)
468 PF04762 IKI3: IKI3 family; I 36.5 5.6E+02 0.012 27.7 12.0 195 258-454 699-927 (928)
469 PF15297 CKAP2_C: Cytoskeleton 36.5 2.9E+02 0.0062 25.4 8.4 65 373-439 118-186 (353)
470 PF02607 B12-binding_2: B12 bi 36.4 79 0.0017 21.3 4.2 35 405-439 13-47 (79)
471 PF04190 DUF410: Protein of un 36.0 3E+02 0.0066 24.2 18.0 27 250-276 87-113 (260)
472 KOG2063 Vacuolar assembly/sort 35.9 5.6E+02 0.012 27.2 19.8 190 214-406 506-745 (877)
473 PF13762 MNE1: Mitochondrial s 35.8 2.2E+02 0.0047 22.4 11.9 83 179-267 41-129 (145)
474 PF04090 RNA_pol_I_TF: RNA pol 35.7 2.6E+02 0.0057 23.4 7.6 30 324-353 42-71 (199)
475 PF00244 14-3-3: 14-3-3 protei 35.4 2.9E+02 0.0064 23.8 9.7 58 112-169 6-64 (236)
476 PF15297 CKAP2_C: Cytoskeleton 35.1 3.6E+02 0.0079 24.8 10.1 63 304-368 119-185 (353)
477 PF09454 Vps23_core: Vps23 cor 34.7 57 0.0012 21.4 3.0 46 142-188 8-53 (65)
478 KOG0551 Hsp90 co-chaperone CNS 34.5 2E+02 0.0044 26.2 7.1 57 296-352 89-148 (390)
479 PF01475 FUR: Ferric uptake re 34.5 1E+02 0.0023 23.0 5.0 45 398-442 12-56 (120)
480 PRK14956 DNA polymerase III su 33.3 4.7E+02 0.01 25.5 11.5 100 306-429 184-284 (484)
481 PF04090 RNA_pol_I_TF: RNA pol 33.2 2.9E+02 0.0062 23.1 7.4 60 359-419 42-102 (199)
482 KOG2297 Predicted translation 33.1 3.7E+02 0.008 24.3 17.5 70 299-378 266-341 (412)
483 PF09868 DUF2095: Uncharacteri 33.0 2E+02 0.0043 21.3 5.6 36 112-148 66-101 (128)
484 PRK14700 recombination factor 32.8 3.7E+02 0.008 24.2 12.3 66 290-355 125-198 (300)
485 KOG3824 Huntingtin interacting 32.8 1.2E+02 0.0025 27.2 5.3 53 82-136 127-179 (472)
486 KOG2297 Predicted translation 32.5 3.8E+02 0.0082 24.2 17.3 22 393-414 321-342 (412)
487 COG0735 Fur Fe2+/Zn2+ uptake r 32.5 2.5E+02 0.0053 22.0 8.3 25 148-172 26-50 (145)
488 PF07720 TPR_3: Tetratricopept 32.4 97 0.0021 17.4 3.7 22 110-131 4-25 (36)
489 KOG3677 RNA polymerase I-assoc 32.1 4.4E+02 0.0095 25.0 8.9 59 256-314 238-298 (525)
490 PRK07003 DNA polymerase III su 32.1 6.2E+02 0.013 26.6 13.0 99 338-440 179-291 (830)
491 PRK14951 DNA polymerase III su 32.0 5.6E+02 0.012 26.1 11.0 94 368-464 180-286 (618)
492 PF10255 Paf67: RNA polymerase 31.9 4.5E+02 0.0098 24.9 10.6 137 141-280 38-191 (404)
493 PF10475 DUF2450: Protein of u 31.7 3.8E+02 0.0083 24.0 9.7 111 259-380 104-219 (291)
494 PF12926 MOZART2: Mitotic-spin 31.5 1.9E+02 0.004 20.3 7.5 42 163-204 29-70 (88)
495 PRK14958 DNA polymerase III su 30.9 5.3E+02 0.012 25.5 11.4 85 340-427 181-279 (509)
496 cd07153 Fur_like Ferric uptake 30.9 1.5E+02 0.0033 21.8 5.3 47 113-159 6-52 (116)
497 KOG3636 Uncharacterized conser 30.8 4.8E+02 0.01 24.9 14.5 201 162-369 39-271 (669)
498 COG2178 Predicted RNA-binding 30.5 3.2E+02 0.0069 22.7 9.3 19 223-241 132-150 (204)
499 PF07064 RIC1: RIC1; InterPro 30.4 3.8E+02 0.0082 23.6 15.4 160 109-281 84-248 (258)
500 COG2178 Predicted RNA-binding 30.3 3.2E+02 0.007 22.7 8.5 107 88-205 20-149 (204)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.1e-61 Score=486.86 Aligned_cols=377 Identities=23% Similarity=0.414 Sum_probs=359.1
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHH
Q 036577 85 ITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVV 164 (470)
Q Consensus 85 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 164 (470)
|.+++|+.+|+.|.. |+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++
T Consensus 420 g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~v 494 (1060)
T PLN03218 420 RAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494 (1060)
T ss_pred CCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHH
Confidence 344444444444422 688899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 036577 165 LGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGE 244 (470)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 244 (470)
|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|...+..
T Consensus 495 f~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g 574 (1060)
T PLN03218 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP 574 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999863211
Q ss_pred CCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHh
Q 036577 245 IGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVV 324 (470)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 324 (470)
+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..
T Consensus 575 ----i~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~ 650 (1060)
T PLN03218 575 ----IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV 650 (1060)
T ss_pred ----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036577 325 TFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYC 404 (470)
Q Consensus 325 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 404 (470)
+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.++.||..+|+.||.+|+
T Consensus 651 TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~ 730 (1060)
T PLN03218 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALC 730 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhhhccC
Q 036577 405 KNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTWTYRTFI 470 (470)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 470 (470)
+.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+.++|.+++++|.+.|+.||..+|++||
T Consensus 731 k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLI 796 (1060)
T PLN03218 731 EGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999874
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.4e-60 Score=478.95 Aligned_cols=385 Identities=19% Similarity=0.308 Sum_probs=370.1
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc
Q 036577 79 EGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158 (470)
Q Consensus 79 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 158 (470)
..+.+.|++++|.++|+.|.+.+.. |+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~-pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLK-ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 3466789999999999999998887 899999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 036577 159 SPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKA--FGCEPNVITYSTLINGLCRTGHTIVALNLFE 236 (470)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 236 (470)
++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986 5789999999999999999999999999999
Q ss_pred HHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 036577 237 EMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMD 316 (470)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (470)
.|.+.+ +.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+
T Consensus 604 ~M~e~g------i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 604 MIHEYN------IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred HHHHcC------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999988 79999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 036577 317 QGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSY 396 (470)
Q Consensus 317 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 396 (470)
.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|...|+.||..+|
T Consensus 678 ~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty 757 (1060)
T PLN03218 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh-----------------------cCCHHHHHHHHHH
Q 036577 397 SILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFE-----------------------IHQVERAFKLFDE 453 (470)
Q Consensus 397 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-----------------------~g~~~~A~~~~~~ 453 (470)
+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ .+..++|..+|++
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~e 837 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRE 837 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999876542 1234789999999
Q ss_pred HHHcCCCCChhhhhccC
Q 036577 454 MRRDGVAADTWTYRTFI 470 (470)
Q Consensus 454 m~~~g~~p~~~~~~~li 470 (470)
|.+.|+.||..||+.+|
T Consensus 838 M~~~Gi~Pd~~T~~~vL 854 (1060)
T PLN03218 838 TISAGTLPTMEVLSQVL 854 (1060)
T ss_pred HHHCCCCCCHHHHHHHH
Confidence 99999999999998875
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.3e-57 Score=451.89 Aligned_cols=373 Identities=21% Similarity=0.339 Sum_probs=350.3
Q ss_pred CccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 036577 80 GDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159 (470)
Q Consensus 80 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 159 (470)
.+...|++++|+++|++|...++..|+..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+|+.++.+|++.|+++
T Consensus 96 ~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~ 175 (697)
T PLN03081 96 KLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLI 175 (697)
T ss_pred HHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHH
Confidence 34567899999999999998776668999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 036577 160 PGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMA 239 (470)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 239 (470)
+|.++|++|. .||..+||.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+++..|..+.+.+++..+.
T Consensus 176 ~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~ 251 (697)
T PLN03081 176 DARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVL 251 (697)
T ss_pred HHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 9999999996 479999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 036577 240 NGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGV 319 (470)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 319 (470)
+.+ ..+|..+|+.++.+|++.|++++|.++|+.|.. +|..+|+.++.+|++.|++++|.++|++|.+.|+
T Consensus 252 ~~g------~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 252 KTG------VVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HhC------CCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 888 789999999999999999999999999999864 5889999999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036577 320 QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSIL 399 (470)
Q Consensus 320 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 399 (470)
.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+++|+++|++++|.++|++|.+ ||..+|+.|
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~l 397 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNAL 397 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998864 688999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCChhhhhccC
Q 036577 400 INGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR-DGVAADTWTYRTFI 470 (470)
Q Consensus 400 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li 470 (470)
|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|+.++|.++|+.|.+ .|+.|+..+|++||
T Consensus 398 I~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 398 IAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 999999999999999999999999999999999999999999999999999999975 69999999998875
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.2e-55 Score=444.82 Aligned_cols=368 Identities=22% Similarity=0.328 Sum_probs=315.1
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc
Q 036577 79 EGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158 (470)
Q Consensus 79 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 158 (470)
..+.+.|++++|.++|+.|.. ++..+||.++.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~-----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~ 304 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCC-----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Confidence 345678999999999999854 678899999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 036577 159 SPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEM 238 (470)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 238 (470)
+.|.+++..|.+.|+.||..+||.|+.+|++.|++++|.++|++|.. ||..+|+.++.+|++.|++++|+++|++|
T Consensus 305 ~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M 380 (857)
T PLN03077 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALM 380 (857)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999974 79999999999999999999999999999
Q ss_pred HhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 036577 239 ANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQG 318 (470)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 318 (470)
.+.+ +.||..+|+.++.+|++.|++++|.++++.+.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+
T Consensus 381 ~~~g------~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-- 452 (857)
T PLN03077 381 EQDN------VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE-- 452 (857)
T ss_pred HHhC------CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC--
Confidence 8887 78999999999999999999999999998888888888888888888888888888888888877753
Q ss_pred CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH----------------------------------HcCCCCCHhHHHHH
Q 036577 319 VQPNVVTFNVIMDELCKNGKMDEASRLLDLMI----------------------------------QIGVRPNAFVYNTL 364 (470)
Q Consensus 319 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----------------------------------~~~~~~~~~~~~~l 364 (470)
+|..+|+.++.+|++.|+.++|..+|++|. +.|+.+|..+++.|
T Consensus 453 --~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naL 530 (857)
T PLN03077 453 --KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNAL 530 (857)
T ss_pred --CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHH
Confidence 355556666666666666555555555554 44444444444455
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCH
Q 036577 365 MDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQV 444 (470)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 444 (470)
+++|+++|++++|.++|+.+ .+|..+|+.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++
T Consensus 531 i~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v 605 (857)
T PLN03077 531 LDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV 605 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChH
Confidence 55666666666666666655 4688899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HcCCCCChhhhhccC
Q 036577 445 ERAFKLFDEMR-RDGVAADTWTYRTFI 470 (470)
Q Consensus 445 ~~A~~~~~~m~-~~g~~p~~~~~~~li 470 (470)
++|.++|+.|. +.|+.|+..+|++|+
T Consensus 606 ~ea~~~f~~M~~~~gi~P~~~~y~~lv 632 (857)
T PLN03077 606 TQGLEYFHSMEEKYSITPNLKHYACVV 632 (857)
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 99999999998 789999999998874
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.3e-54 Score=431.50 Aligned_cols=366 Identities=17% Similarity=0.288 Sum_probs=317.9
Q ss_pred CccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 036577 80 GDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159 (470)
Q Consensus 80 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 159 (470)
.+.+.|++++|.++|+.|.+ |+..+||.++.+|++.|++++|+++|++|.+.|+.|+..+|..++.+|++.|+.+
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 45677888888888888853 6788889999999999999999999999988888888888888888888888888
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 036577 160 PGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMA 239 (470)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 239 (470)
.+.+++..+.+.|+.+|..+|+.|+.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|+.++|+++|++|.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 8888888888888888889999999999999999999999998864 688899999999999999999999999998
Q ss_pred hcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 036577 240 NGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGV 319 (470)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 319 (470)
..+ +.||..||+.++.+|++.|++++|.++++.|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.
T Consensus 318 ~~g------~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~---- 387 (697)
T PLN03081 318 DSG------VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP---- 387 (697)
T ss_pred HcC------CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----
Confidence 877 7899999999999999999999999999999999999999999999999999999999999998886
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHH-CCCCCCHHHHHH
Q 036577 320 QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMES-NRCMHDVFSYSI 398 (470)
Q Consensus 320 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~ 398 (470)
.||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .++.|+..+|+.
T Consensus 388 ~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~ 467 (697)
T PLN03081 388 RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC 467 (697)
T ss_pred CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHh
Confidence 4688899999999999999999999999999999999999999999999999999999999999975 588889999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhhhcc
Q 036577 399 LINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAAD-TWTYRTF 469 (470)
Q Consensus 399 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l 469 (470)
++++|++.|++++|.+++++| ++.|+..+|+.|+.+|..+|+.+.|.++++++.+ +.|+ ..+|..|
T Consensus 468 li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L 534 (697)
T PLN03081 468 MIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVL 534 (697)
T ss_pred HHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHH
Confidence 999999999999999988876 6788888888888888888888888888777764 5554 3455543
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.8e-54 Score=438.59 Aligned_cols=370 Identities=24% Similarity=0.351 Sum_probs=262.6
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 036577 81 DITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSP 160 (470)
Q Consensus 81 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 160 (470)
+.+.|+++.|+++|+.|.+ ++..+||.++.+|++.|++++|+++|++|...|+.||..||+.++.+|+..++++.
T Consensus 131 ~~~~g~~~~A~~~f~~m~~-----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 131 FVRFGELVHAWYVFGKMPE-----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred HHhCCChHHHHHHHhcCCC-----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhh
Confidence 4577899999999999854 68889999999999999999999999999999999999999888888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036577 161 GFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240 (470)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 240 (470)
+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. ||..+|++++.+|++.|+.++|+++|++|..
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~ 281 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRE 281 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 888888888888888888888888888888877777777777753 5777777777777777777777777777776
Q ss_pred cCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 036577 241 GNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQ 320 (470)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 320 (470)
.+ +.||..+|+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .
T Consensus 282 ~g------~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~ 351 (857)
T PLN03077 282 LS------VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----T 351 (857)
T ss_pred cC------CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----C
Confidence 66 5666666666666666666666666666666666666666666666666655555555555555553 3
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036577 321 PNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILI 400 (470)
Q Consensus 321 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 400 (470)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.+.+.|+.|+..+|+.|+
T Consensus 352 ~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li 431 (857)
T PLN03077 352 KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALI 431 (857)
T ss_pred CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555555555444444444444444
Q ss_pred HHHHHc-------------------------------CChhHHHHHHHHHHHCCC-------------------------
Q 036577 401 NGYCKN-------------------------------KEIEGALSLYSEMLSKGI------------------------- 424 (470)
Q Consensus 401 ~~~~~~-------------------------------g~~~~A~~~~~~~~~~~~------------------------- 424 (470)
.+|++. |+.++|+.+|++|.. ++
T Consensus 432 ~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~ 510 (857)
T PLN03077 432 EMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKE 510 (857)
T ss_pred HHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHH
Confidence 444444 444444444444442 23
Q ss_pred ----------------------------------------CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 036577 425 ----------------------------------------KPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTW 464 (470)
Q Consensus 425 ----------------------------------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 464 (470)
.||..+|+.++.+|+++|+.++|.++|++|.+.|+.||..
T Consensus 511 i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~ 590 (857)
T PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV 590 (857)
T ss_pred HHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc
Confidence 3455678888899999999999999999999999999999
Q ss_pred hhhccC
Q 036577 465 TYRTFI 470 (470)
Q Consensus 465 ~~~~li 470 (470)
||+.+|
T Consensus 591 T~~~ll 596 (857)
T PLN03077 591 TFISLL 596 (857)
T ss_pred cHHHHH
Confidence 999875
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=5.9e-26 Score=237.18 Aligned_cols=360 Identities=14% Similarity=0.149 Sum_probs=242.6
Q ss_pred CccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 036577 80 GDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159 (470)
Q Consensus 80 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 159 (470)
.+...|++++|.+.|+.+....|. +..++..+...+.+.|++++|...++++.+.+ +.+...+..++..+...|+++
T Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 584 (899)
T TIGR02917 508 IDIQEGNPDDAIQRFEKVLTIDPK--NLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLK 584 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHH
Confidence 344566778888888887776665 67777777777777778888888777776654 455666777777777777777
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 036577 160 PGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMA 239 (470)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 239 (470)
+|.++++.+.+.. +.+..+|..++.+|...|++++|...|+++.+.. +.+...+..+...+.+.|++++|...++++.
T Consensus 585 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 662 (899)
T TIGR02917 585 KALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRAL 662 (899)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777776643 4566677777777777777777777777776543 3345566777777777777777777777776
Q ss_pred hcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 036577 240 NGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGV 319 (470)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 319 (470)
... +.+..++..++..+...|++++|.++++.+.... +.+...+..+...+...|++++|...++.+...+
T Consensus 663 ~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~- 733 (899)
T TIGR02917 663 ELK-------PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA- 733 (899)
T ss_pred hcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-
Confidence 654 4456677777777777777777777777776653 3455666666667777777777777777766653
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036577 320 QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSIL 399 (470)
Q Consensus 320 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 399 (470)
|+..++..++.++.+.|++++|...++.+.+..+. +...+..++..|...|+.++|...|+++.+.. +.+..+++.+
T Consensus 734 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l 810 (899)
T TIGR02917 734 -PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNL 810 (899)
T ss_pred -CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 33355556666667777777777777766665433 56666666666766777777777777666654 4456666666
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 036577 400 INGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDG 458 (470)
Q Consensus 400 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 458 (470)
+..+...|+ ++|+.+++++.+... -+..++..+...+...|++++|.++++++.+.+
T Consensus 811 ~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 811 AWLYLELKD-PRALEYAEKALKLAP-NIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHhcCc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 666666666 556666666665421 134455556666666666666666666666543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=1.5e-25 Score=234.05 Aligned_cols=352 Identities=13% Similarity=0.064 Sum_probs=160.2
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 036577 84 TITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFV 163 (470)
Q Consensus 84 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 163 (470)
.|++++|...|+.+....|. +...+..++..+.+.|++++|..+++++.+.. +.+...|..+..++...|++++|..
T Consensus 546 ~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 622 (899)
T TIGR02917 546 TGNEEEAVAWLEKAAELNPQ--EIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVS 622 (899)
T ss_pred cCCHHHHHHHHHHHHHhCcc--chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 44444444444444444433 33444444444444455555555444444332 3344444444444444455555544
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 036577 164 VLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243 (470)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 243 (470)
.++++.+.. +.+...+..+..++...|++++|...|+++.+.. +.+..++..++..+...|++++|.++++.+....
T Consensus 623 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 699 (899)
T TIGR02917 623 SFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH- 699 (899)
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 444444432 2233444444444444455555555444444321 2233444444444444455555555444444433
Q ss_pred CCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 036577 244 EIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNV 323 (470)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 323 (470)
+.+...+..+...+.+.|++++|.+.|+.+...+ |+..++..+..++.+.|++++|...++++.+.. +.+.
T Consensus 700 ------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~ 770 (899)
T TIGR02917 700 ------PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDA 770 (899)
T ss_pred ------cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 3334444444444444455555555444444432 222334444444444455555544444444432 3334
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036577 324 VTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGY 403 (470)
Q Consensus 324 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (470)
..+..+...|...|++++|...|+++.+..+ .+...++.++..+...|+ .+|..+++++.... +.+...+..+...+
T Consensus 771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 847 (899)
T TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLL 847 (899)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 4444444444444555555555544444432 234444444444444444 44444444444432 22333444444444
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036577 404 CKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEM 454 (470)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 454 (470)
...|++++|.++++++++.+.. +..++..+..++.+.|+.++|.+++++|
T Consensus 848 ~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 848 VEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4445555555555444443322 4444444444444455555555444444
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=6.1e-23 Score=192.92 Aligned_cols=302 Identities=15% Similarity=0.109 Sum_probs=139.6
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCH
Q 036577 117 LAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD---AVTFNSLIKGLCAESRI 193 (470)
Q Consensus 117 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~ 193 (470)
+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ..++..++..|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344555555555555555543 33344455555555555555555555555544321111 12344445555555555
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHH
Q 036577 194 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAK 273 (470)
Q Consensus 194 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 273 (470)
++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+...++. .+...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~------------------- 178 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD-----SLRVE------------------- 178 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC-----cchHH-------------------
Confidence 55555555554431 223344444555555555555555555554443210 00000
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 036577 274 ELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIG 353 (470)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 353 (470)
....+..+...+.+.|++++|...++++.+.. +.+...+..+...+.+.|++++|.++++++.+.+
T Consensus 179 -------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 244 (389)
T PRK11788 179 -------------IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQD 244 (389)
T ss_pred -------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 01122333444444555555555555544432 2223344444455555555555555555555433
Q ss_pred CCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHH
Q 036577 354 VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNT 433 (470)
Q Consensus 354 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 433 (470)
......+++.++.+|...|++++|...++++.+.. |+...+..++..+.+.|++++|..+++++.+. .|+...+..
T Consensus 245 p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~ 320 (389)
T PRK11788 245 PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHR 320 (389)
T ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHH
Confidence 22223344455555555555555555555554432 33333445555555555555555555555433 345555554
Q ss_pred HHHHHHh---cCCHHHHHHHHHHHHHcCCCCC
Q 036577 434 LFIGLFE---IHQVERAFKLFDEMRRDGVAAD 462 (470)
Q Consensus 434 l~~~~~~---~g~~~~A~~~~~~m~~~g~~p~ 462 (470)
++..+.. .|+.+++..++++|.+.++.|+
T Consensus 321 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 321 LLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred HHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 4444442 3355555555555554444443
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=2.4e-23 Score=187.62 Aligned_cols=369 Identities=15% Similarity=0.121 Sum_probs=311.9
Q ss_pred HhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHH
Q 036577 73 RFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT-YNILINC 151 (470)
Q Consensus 73 ~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~-~~~li~~ 151 (470)
.+.+.+..+...|++++|+.+++.+++..|. .+.+|..+..++...|+.+.|.+.|.+.++. .|+... ...+...
T Consensus 118 ~ysn~aN~~kerg~~~~al~~y~~aiel~p~--fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 118 AYSNLANILKERGQLQDALALYRAAIELKPK--FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHhcCch--hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHH
Confidence 3444444556678999999999999998887 8899999999999999999999999998886 465553 3446666
Q ss_pred HHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-cchHHHHHHHHHhcCChHH
Q 036577 152 FCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPN-VITYSTLINGLCRTGHTIV 230 (470)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~ 230 (470)
+...|+..+|...+.+.++.. +-=..+|..|...+...|+...|+..|++..+. .|+ ...|..|...|...+.++.
T Consensus 194 lka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchH
Confidence 777899999999998888763 233567889999999999999999999999875 455 6789999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 036577 231 ALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCL 310 (470)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 310 (470)
|...|.+..... +-....+..+...|...|..+.|+..|++..+.. +.-...|+.|..++-..|+..+|.+.
T Consensus 271 Avs~Y~rAl~lr-------pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~c 342 (966)
T KOG4626|consen 271 AVSCYLRALNLR-------PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDC 342 (966)
T ss_pred HHHHHHHHHhcC-------CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHH
Confidence 999999998765 5567888899999999999999999999998863 22467899999999999999999999
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 036577 311 LIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCM 390 (470)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 390 (470)
+.+..... +.-....+.|..+|...|.+++|..+|....+..+. -....+.|...|-.+|++++|...+++.++- .
T Consensus 343 YnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~ 418 (966)
T KOG4626|consen 343 YNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--K 418 (966)
T ss_pred HHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--C
Confidence 99998874 445678889999999999999999999999886433 3567889999999999999999999998875 4
Q ss_pred C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 036577 391 H-DVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD-VVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTW 464 (470)
Q Consensus 391 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 464 (470)
| -...|+.+...|-..|+.+.|+..+.+.+.. .|. ...++.|...|...|+..+|+.-++...+ ++||..
T Consensus 419 P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfp 490 (966)
T KOG4626|consen 419 PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFP 490 (966)
T ss_pred chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCc
Confidence 4 5678999999999999999999999999854 565 35888999999999999999999999988 778753
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=1.8e-21 Score=192.47 Aligned_cols=372 Identities=15% Similarity=0.062 Sum_probs=294.2
Q ss_pred HHHhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036577 71 RERFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILIN 150 (470)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 150 (470)
...++..|..+...|++++|+..|+.++...| +...|..+..+|.+.|++++|++.++..++.+ +.+...+..+..
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p---~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~ 202 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKP---DPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRAN 202 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 44566778888899999999999999998775 45678999999999999999999999999875 557789999999
Q ss_pred HHHhcCCcchHHHHHHHHHhCCC-----------------------------CCCHHHHHHH------------------
Q 036577 151 CFCKMGRVSPGFVVLGRILRSCF-----------------------------TPDAVTFNSL------------------ 183 (470)
Q Consensus 151 ~~~~~g~~~~a~~~~~~~~~~~~-----------------------------~~~~~~~~~l------------------ 183 (470)
++...|++++|+..|..+...+. +.+...+..+
T Consensus 203 a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 203 AYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLED 282 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhc
Confidence 99999999999876654432110 0000000000
Q ss_pred ------------HHHH------HhcCCHHHHHHHHHHHHhcC--CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 036577 184 ------------IKGL------CAESRIMEAAALFTKLKAFG--CEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243 (470)
Q Consensus 184 ------------~~~~------~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 243 (470)
+..+ ...+++++|.+.|++..+.+ .+.....|..+...+...|++++|+..+++.....
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~- 361 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD- 361 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 0000 12357889999999998764 22345678888889999999999999999998865
Q ss_pred CCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 036577 244 EIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNV 323 (470)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 323 (470)
+.+...|..+...+...|++++|...|+++.+.. +.+...|..+...+...|++++|...|++..+.. +.+.
T Consensus 362 ------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~ 433 (615)
T TIGR00990 362 ------PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFI 433 (615)
T ss_pred ------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCH
Confidence 4457788999999999999999999999998764 3467889999999999999999999999999875 5567
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH------HHHH
Q 036577 324 VTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDV------FSYS 397 (470)
Q Consensus 324 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~ 397 (470)
..+..+..++.+.|++++|+..+++.++..+. +...++.+...+...|++++|...|++........+. ..++
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence 77888899999999999999999999987433 6788999999999999999999999998876422111 1122
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036577 398 ILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRD 457 (470)
Q Consensus 398 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (470)
..+..+...|++++|.+++++.++... .+...+..+...+.+.|++++|.++|++..+.
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 223334457999999999999987642 24457888999999999999999999999763
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=5.7e-23 Score=193.11 Aligned_cols=297 Identities=15% Similarity=0.131 Sum_probs=209.2
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCC
Q 036577 81 DITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPD---LYTYNILINCFCKMGR 157 (470)
Q Consensus 81 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~ 157 (470)
....|++++|+..|..+++.+|. +..++..+...+...|++++|..+++.+...+..++ ...+..+...|...|+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPE--TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 45668999999999999998876 788999999999999999999999999987642222 3567889999999999
Q ss_pred cchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----chHHHHHHHHHhcCChHHHHH
Q 036577 158 VSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNV----ITYSTLINGLCRTGHTIVALN 233 (470)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~----~~~~~l~~~~~~~g~~~~a~~ 233 (470)
+++|..+|+++.+.. +.+..+++.++..+.+.|++++|.+.++++.+.+..+.. ..+..+...+.+.|++++|.+
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999998763 557789999999999999999999999999876432211 134556667778888888888
Q ss_pred HHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 036577 234 LFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIE 313 (470)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 313 (470)
.|+++.+.. +.+...+..+...+.+.|++++|.++++++...+......+++.++.+|.+.|++++|...+++
T Consensus 202 ~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 202 LLKKALAAD-------PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHhHC-------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888887654 3345566677777777777777777777776643222234455566666666666666666666
Q ss_pred HHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc---CCCHHHHHHHHHHHHHCCCC
Q 036577 314 MMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCL---TGRVNRAKELFVSMESNRCM 390 (470)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~ 390 (470)
+.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..+++++.+.++.
T Consensus 275 ~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 275 ALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred HHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 6554 234344455555556666666666666655554 3455555555544442 33555555555555554433
Q ss_pred C
Q 036577 391 H 391 (470)
Q Consensus 391 ~ 391 (470)
|
T Consensus 351 ~ 351 (389)
T PRK11788 351 R 351 (389)
T ss_pred C
Confidence 3
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=9.7e-21 Score=186.59 Aligned_cols=326 Identities=11% Similarity=0.040 Sum_probs=272.5
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 036577 81 DITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSP 160 (470)
Q Consensus 81 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 160 (470)
....|++++|+.+++..+...|. +...+..++.++...|++++|+..|+++.+.. +.+...+..+...+...|++++
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~p~--~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~ 128 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTAKN--GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYAT 128 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhCCC--chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHH
Confidence 34678999999999999999987 66777778888889999999999999999875 6677889999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036577 161 GFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240 (470)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 240 (470)
|...++++++.. +.+...+..++..+...|++++|...++++.... +.+...+..+ ..+...|++++|...++.+..
T Consensus 129 Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 129 VADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLP 205 (656)
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHh
Confidence 999999999863 5567888999999999999999999999887653 2233333333 457889999999999999877
Q ss_pred cCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH----HHHHHHHHHH
Q 036577 241 GNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNE----AKCLLIEMMD 316 (470)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~ 316 (470)
.. ..++...+..+...+...|++++|...++.+.... +.+...+..+...+...|++++ |...+++..+
T Consensus 206 ~~------~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 206 FF------ALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred cC------CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 65 12344455666788899999999999999998864 4467888889999999999986 8999999988
Q ss_pred CCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 036577 317 QGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSY 396 (470)
Q Consensus 317 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 396 (470)
.. +.+...+..+...+.+.|++++|...+++..+..+. +...+..+..++...|++++|...++++...+ +.+...+
T Consensus 279 l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~~~ 355 (656)
T PRK15174 279 FN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTSKWN 355 (656)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccchHHH
Confidence 74 556778999999999999999999999999988654 56778889999999999999999999998764 2233445
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 397 SILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 397 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
..+..++...|+.++|+..|++..+.
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 55677899999999999999999876
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=1.5e-20 Score=185.33 Aligned_cols=332 Identities=11% Similarity=0.039 Sum_probs=277.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036577 109 SFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLC 188 (470)
Q Consensus 109 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (470)
-...++..+.+.|++++|..+++...... +.+...+..++.++...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 34556777889999999999999998875 5556677777888889999999999999999874 556788899999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCC
Q 036577 189 AESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGF 268 (470)
Q Consensus 189 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 268 (470)
..|++++|...++++.... +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|+
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-------P~~~~a~~~~-~~l~~~g~ 192 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-------PPRGDMIATC-LSFLNKSR 192 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-------CCCHHHHHHH-HHHHHcCC
Confidence 9999999999999998752 3456788889999999999999999999887765 3344444444 34788999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHH----HHH
Q 036577 269 VDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDE----ASR 344 (470)
Q Consensus 269 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~ 344 (470)
+++|...++.+......++...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++ |..
T Consensus 193 ~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~ 271 (656)
T PRK15174 193 LPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAE 271 (656)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHH
Confidence 99999999998876433445555666788899999999999999999875 5567788889999999999986 899
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 036577 345 LLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGI 424 (470)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 424 (470)
.++++.+..+. +...+..+...+...|++++|...+++..... +.+...+..+..++.+.|++++|+..++++.+.
T Consensus 272 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~-- 347 (656)
T PRK15174 272 HWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE-- 347 (656)
T ss_pred HHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 99999988654 77889999999999999999999999998864 446778888999999999999999999999875
Q ss_pred CCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 425 KPDVV-IYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 425 ~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
.|+.. .+..+..++...|+.++|...|++..+
T Consensus 348 ~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 348 KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44443 344456788999999999999999986
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=2.8e-20 Score=195.75 Aligned_cols=370 Identities=10% Similarity=0.049 Sum_probs=273.4
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHH-----------
Q 036577 78 GEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFP-DLYTY----------- 145 (470)
Q Consensus 78 ~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~-~~~~~----------- 145 (470)
|..+...|++++|+..|+.+++..|. +..++..+..++.+.|++++|+..|++..+..-.. ....+
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~--~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPK--DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 44556789999999999999998886 88999999999999999999999999998764211 11111
Q ss_pred -HHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHH------
Q 036577 146 -NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTL------ 218 (470)
Q Consensus 146 -~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l------ 218 (470)
......+.+.|++++|...++++++.. +.+...+..+..++...|++++|++.|+++.+.. +.+...+..+
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~ 431 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQ 431 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 223456778999999999999999874 4567788889999999999999999999988753 2223333222
Q ss_pred ------------------------------------HHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHH
Q 036577 219 ------------------------------------INGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDG 262 (470)
Q Consensus 219 ------------------------------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 262 (470)
...+...|++++|++.|++..+.. +.+...+..+...
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-------P~~~~~~~~LA~~ 504 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-------PGSVWLTYRLAQD 504 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHH
Confidence 233456788899999999888765 4567778888889
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-------------------------
Q 036577 263 LCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ------------------------- 317 (470)
Q Consensus 263 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------------------------- 317 (470)
|.+.|++++|...++++.+.. +.+...+..+...+...+++++|...++.+...
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 999999999999999887643 223333333333333444444444443322100
Q ss_pred --------------CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHH
Q 036577 318 --------------GVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVS 383 (470)
Q Consensus 318 --------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 383 (470)
..+.+...+..+...+.+.|++++|+..++.+.+..+. +...+..++..+...|+.++|++.++.
T Consensus 584 ~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 584 RDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 12445556677788888999999999999999887544 678888899999999999999999998
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC--C---CHhHHHHHHHHHHhcCCHHHHHHHHHHHH-Hc
Q 036577 384 MESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIK--P---DVVIYNTLFIGLFEIHQVERAFKLFDEMR-RD 457 (470)
Q Consensus 384 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~ 457 (470)
+.+.. +.+...+..+..++...|++++|.+++++++..... | +...+..+...+...|++++|+..|++.. ..
T Consensus 663 ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~ 741 (1157)
T PRK11447 663 LPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVAS 741 (1157)
T ss_pred HhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 77653 336667777888888999999999999998865322 1 22456666788889999999999998886 34
Q ss_pred CCCC
Q 036577 458 GVAA 461 (470)
Q Consensus 458 g~~p 461 (470)
|+.|
T Consensus 742 ~~~~ 745 (1157)
T PRK11447 742 GITP 745 (1157)
T ss_pred CCCC
Confidence 5544
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=3.7e-21 Score=173.62 Aligned_cols=338 Identities=17% Similarity=0.152 Sum_probs=291.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCH-HHHHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDA-VTFNSLI 184 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~ 184 (470)
-..+|..+...+-..|++++|+.+|+.+.+.. +.....|..+..++...|+.+.|.+.|...++. .|+. .+...+.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcchh
Confidence 57789999999999999999999999999875 557889999999999999999999999999886 4543 3445566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHH
Q 036577 185 KGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLC 264 (470)
Q Consensus 185 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 264 (470)
..+...|++++|...|.+..+.. +--.+.|+.|...+-..|+.-.|++.|++....+ +.-...|-.|...|.
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-------P~f~dAYiNLGnV~k 263 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-------PNFLDAYINLGNVYK 263 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-------CcchHHHhhHHHHHH
Confidence 66777999999999998888752 2337789999999999999999999999999876 445678999999999
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHH
Q 036577 265 KEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASR 344 (470)
Q Consensus 265 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 344 (470)
..+.++.|...|.+..... +.....+..+...|...|+.+-|+..+++.++.. +.-...|+.|..++-..|++.+|.+
T Consensus 264 e~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~ 341 (966)
T KOG4626|consen 264 EARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVD 341 (966)
T ss_pred HHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHH
Confidence 9999999999999887753 2356778888888999999999999999999874 3346789999999999999999999
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 036577 345 LLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGI 424 (470)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 424 (470)
.+.+....... .....+.|...|...|.+++|..+|....+-. +--...++.|...|-++|++++|+..+++.+ .+
T Consensus 342 cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal--rI 417 (966)
T KOG4626|consen 342 CYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEAL--RI 417 (966)
T ss_pred HHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHH--hc
Confidence 99999988544 57788999999999999999999999988753 2246678999999999999999999999999 56
Q ss_pred CCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 036577 425 KPDV-VIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAAD 462 (470)
Q Consensus 425 ~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 462 (470)
.|+. ..|+.+...|-..|+.+.|.+.+.+.+. +.|.
T Consensus 418 ~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt 454 (966)
T KOG4626|consen 418 KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPT 454 (966)
T ss_pred CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcH
Confidence 7875 4899999999999999999999999987 5554
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=2.3e-18 Score=173.53 Aligned_cols=363 Identities=10% Similarity=0.022 Sum_probs=228.3
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHH
Q 036577 85 ITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVV 164 (470)
Q Consensus 85 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 164 (470)
|+.++|++++.......+. +...+..+...+...|++++|.++|++..+.. +.+...+..+..++...|++++|+..
T Consensus 29 g~~~~A~~~~~~~~~~~~~--~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~ 105 (765)
T PRK10049 29 GQDAEVITVYNRYRVHMQL--PARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVK 105 (765)
T ss_pred CCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455555555554442222 34444555555555555555555555544432 33344444444455555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh----------------
Q 036577 165 LGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHT---------------- 228 (470)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~---------------- 228 (470)
++++++.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...|..
T Consensus 106 l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~ 182 (765)
T PRK10049 106 AKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAE 182 (765)
T ss_pred HHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHH
Confidence 55554431 22333 4444445555555555555555554432 11222233333333333333
Q ss_pred ------------------------------HHHHHHHHHHHhcCCCCCcccCCCHh-hH----HHHHHHHHhCCCHHHHH
Q 036577 229 ------------------------------IVALNLFEEMANGNGEIGVVCEPNTV-TY----TTIIDGLCKEGFVDKAK 273 (470)
Q Consensus 229 ------------------------------~~a~~~~~~~~~~~~~~~~~~~~~~~-~~----~~l~~~~~~~g~~~~a~ 273 (470)
++|++.++.+....+ ..|+.. .+ ...+..+...|++++|+
T Consensus 183 ~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~-----~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~ 257 (765)
T PRK10049 183 KRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWH-----DNPDATADYQRARIDRLGALLARDRYKDVI 257 (765)
T ss_pred HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcc-----cCCccchHHHHHHHHHHHHHHHhhhHHHHH
Confidence 445555555554321 112211 11 11134456779999999
Q ss_pred HHHHHHHhCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC---CHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036577 274 ELFLKMKDENIN-PNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQP---NVVTFNVIMDELCKNGKMDEASRLLDLM 349 (470)
Q Consensus 274 ~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 349 (470)
..|+.+.+.+.+ |+. ....+...|...|++++|+..|+++.+..... .......+..++...|++++|..+++.+
T Consensus 258 ~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~ 336 (765)
T PRK10049 258 SEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHT 336 (765)
T ss_pred HHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 999999887532 332 22335778999999999999999987653111 1345666777889999999999999999
Q ss_pred HHcCC-----------CCC---HhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 036577 350 IQIGV-----------RPN---AFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSL 415 (470)
Q Consensus 350 ~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 415 (470)
.+..+ .|+ ...+..+...+...|+.++|+++++++.... +.+...+..++..+...|++++|++.
T Consensus 337 ~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~ 415 (765)
T PRK10049 337 INNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENE 415 (765)
T ss_pred hhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 87632 123 2345667788899999999999999998764 55788999999999999999999999
Q ss_pred HHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 036577 416 YSEMLSKGIKPD-VVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTW 464 (470)
Q Consensus 416 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 464 (470)
+++.++. .|+ ...+..+...+...|++++|..+++++++ ..|+..
T Consensus 416 l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~ 461 (765)
T PRK10049 416 LKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDP 461 (765)
T ss_pred HHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCH
Confidence 9999975 455 55777778889999999999999999997 555543
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=4.8e-18 Score=178.98 Aligned_cols=256 Identities=13% Similarity=0.091 Sum_probs=197.3
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC------------------C------
Q 036577 84 TITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGL------------------F------ 139 (470)
Q Consensus 84 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~------------------~------ 139 (470)
.|+.++|++.|+.+.+..|. +...+..+...+...|++++|+..++++.+... .
T Consensus 160 ~g~~~~A~~~L~~ll~~~P~--~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~ 237 (1157)
T PRK11447 160 PAQRPEAINQLQRLNADYPG--NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAA 237 (1157)
T ss_pred CccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHH
Confidence 47899999999999999887 788899999999999999999999998755320 0
Q ss_pred --------CCHHHH---------------------HHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 036577 140 --------PDLYTY---------------------NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAE 190 (470)
Q Consensus 140 --------~~~~~~---------------------~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (470)
|+.... ......+...|++++|+..|++.++.. +.+..++..+..+|.+.
T Consensus 238 l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~ 316 (1157)
T PRK11447 238 LQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQ 316 (1157)
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 100000 012345667899999999999999864 45788999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCc---chHH------------HHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhh
Q 036577 191 SRIMEAAALFTKLKAFGCEPNV---ITYS------------TLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVT 255 (470)
Q Consensus 191 g~~~~a~~~~~~~~~~g~~~~~---~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 255 (470)
|++++|+..|++..+.. |+. ..|. .....+.+.|++++|++.|+++.... +.+...
T Consensus 317 g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-------P~~~~a 387 (1157)
T PRK11447 317 GDRARAVAQFEKALALD--PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-------NTDSYA 387 (1157)
T ss_pred CCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHH
Confidence 99999999999998754 322 1121 22446778999999999999999876 556778
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHH------------------------------------------
Q 036577 256 YTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNS------------------------------------------ 293 (470)
Q Consensus 256 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~------------------------------------------ 293 (470)
+..+..++...|++++|++.|+++.+... .+...+..
T Consensus 388 ~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~ 466 (1157)
T PRK11447 388 VLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQ 466 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHH
Confidence 88899999999999999999999887532 22333222
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 036577 294 LIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIG 353 (470)
Q Consensus 294 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 353 (470)
+...+...|++++|++.+++..+.. +-+...+..+...|.+.|++++|...++++.+..
T Consensus 467 ~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~ 525 (1157)
T PRK11447 467 QAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK 525 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 2234456788999999999888774 4456677788889999999999999999887753
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=7.9e-18 Score=166.61 Aligned_cols=344 Identities=11% Similarity=-0.002 Sum_probs=268.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036577 108 SSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGL 187 (470)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 187 (470)
..+......+.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|++.++..++.. +.+...|..+..+|
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 34667788899999999999999998875 5788899999999999999999999999999874 45678899999999
Q ss_pred HhcCCHHHHHHHHHHHHhcC-----------------------------CCCCcchHHHHHHH-----------------
Q 036577 188 CAESRIMEAAALFTKLKAFG-----------------------------CEPNVITYSTLING----------------- 221 (470)
Q Consensus 188 ~~~g~~~~a~~~~~~~~~~g-----------------------------~~~~~~~~~~l~~~----------------- 221 (470)
...|++++|+..|......+ .+.+...+..+...
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence 99999999987664432210 01111111111000
Q ss_pred -------------H------HhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 036577 222 -------------L------CRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE 282 (470)
Q Consensus 222 -------------~------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 282 (470)
. ...+++++|.+.|+.....+.. .+.....+..+...+...|++++|+..+++....
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~----~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKL----GEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCC----ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 0 1235788999999998876421 1345567888889999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHH
Q 036577 283 NINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYN 362 (470)
Q Consensus 283 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 362 (470)
. +.....|..+...+...|++++|...|+++.+.. +.+...|..+...+...|++++|...|++.++..+. +...+.
T Consensus 361 ~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~ 437 (615)
T TIGR00990 361 D-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHI 437 (615)
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHH
Confidence 3 2346688889999999999999999999998874 556788999999999999999999999999988644 677788
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-----h-HHHHHHH
Q 036577 363 TLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDV-----V-IYNTLFI 436 (470)
Q Consensus 363 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-----~-~~~~l~~ 436 (470)
.+..++.+.|++++|...|++.+... +.+...|+.+..++...|++++|++.|++.++.....+. . .++..+.
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALA 516 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHH
Confidence 89999999999999999999988763 447889999999999999999999999999875322111 1 1122222
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 036577 437 GLFEIHQVERAFKLFDEMRRDGVAADTW 464 (470)
Q Consensus 437 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 464 (470)
.+...|++++|.+++++..+ +.|+..
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~--l~p~~~ 542 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALI--IDPECD 542 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHh--cCCCcH
Confidence 33446999999999999887 455543
No 20
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=1.5e-16 Score=157.55 Aligned_cols=192 Identities=9% Similarity=-0.006 Sum_probs=102.7
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-----CCCCHhHHHHHHHHHHHc
Q 036577 262 GLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQG-----VQPNVVTFNVIMDELCKN 336 (470)
Q Consensus 262 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~ 336 (470)
++...|++.++++.|+.+...+.+....+-..+.++|...+++++|..++..+.... .+++......|.-++...
T Consensus 301 aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 301 ALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES 380 (822)
T ss_pred HHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence 444555566666666666655544344455556666666666666666666654432 112222334555566666
Q ss_pred CCHHHHHHHHHHHHHcCC-------------CCCH-hHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036577 337 GKMDEASRLLDLMIQIGV-------------RPNA-FVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILING 402 (470)
Q Consensus 337 g~~~~a~~~~~~~~~~~~-------------~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 402 (470)
+++++|..+++.+.+..+ .||- ..+..++..+...|++.+|++.++.+.... |-|......+...
T Consensus 381 e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v 459 (822)
T PRK14574 381 EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASI 459 (822)
T ss_pred ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 666666666666655211 1111 122334445555666666666666665442 3356666666666
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 403 YCKNKEIEGALSLYSEMLSKGIKPD-VVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
+...|.+.+|.+.++..... .|+ ..+....+.++...|++++|..+.+.+.+
T Consensus 460 ~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 460 YLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 66666666666666554433 332 33444555556666666666666655554
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=1.4e-16 Score=160.74 Aligned_cols=345 Identities=10% Similarity=0.007 Sum_probs=262.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIK 185 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (470)
+.....-.+.+....|+.++|++++.+..... +.+...+..+...+.+.|++++|.+++++.++.. +.+...+..++.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 55555566777888999999999999998633 5667789999999999999999999999998863 556777888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHh
Q 036577 186 GLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCK 265 (470)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 265 (470)
.+...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.... +.+...+..+..++..
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-------P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-------PQTQQYPTEYVQALRN 162 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHH
Confidence 9999999999999999998762 33455 8888899999999999999999999876 4566666667777766
Q ss_pred CCCHHHHHHHHH----------------------------------------------HHHhC-CCCCCHH-HH----HH
Q 036577 266 EGFVDKAKELFL----------------------------------------------KMKDE-NINPNVV-TY----NS 293 (470)
Q Consensus 266 ~g~~~~a~~~~~----------------------------------------------~~~~~-~~~~~~~-~~----~~ 293 (470)
.|..++|++.++ .+... ...|+.. .+ ..
T Consensus 163 ~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 163 NRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred CCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 666665554444 33321 1112111 11 11
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCC-CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHhHHHHHHHHHH
Q 036577 294 LIHGFCYANDWNEAKCLLIEMMDQGVQ-PNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRP---NAFVYNTLMDGFC 369 (470)
Q Consensus 294 li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~ 369 (470)
.+..+...|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|...|+.+.+..... .......+..++.
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 133456779999999999999887532 332 22235778999999999999999988764321 1345666777889
Q ss_pred cCCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 036577 370 LTGRVNRAKELFVSMESNRC-----------MHD---VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLF 435 (470)
Q Consensus 370 ~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 435 (470)
..|++++|..+++.+.+... .|+ ...+..+...+...|++++|+++++++.... +.+...+..+.
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA 400 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYA 400 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 99999999999999887531 122 2345677888999999999999999998763 33567888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 036577 436 IGLFEIHQVERAFKLFDEMRRDGVAADTWT 465 (470)
Q Consensus 436 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 465 (470)
..+...|++++|++.+++..+ +.|+...
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~--l~Pd~~~ 428 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEV--LEPRNIN 428 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHh--hCCCChH
Confidence 999999999999999999998 6687543
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.80 E-value=1e-14 Score=147.75 Aligned_cols=354 Identities=10% Similarity=0.027 Sum_probs=257.2
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCcc-
Q 036577 83 TTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNST--GLFPDLYTYNILINCFCKMGRVS- 159 (470)
Q Consensus 83 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~- 159 (470)
..+...+|....+.+.+..|. +....-.+.-...+.|+.++|.++|+..... +...+......++..|.+.+...
T Consensus 354 ~~~~~~~~~~~~~~~y~~~~~--~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 431 (987)
T PRK09782 354 ATRNKAEALRLARLLYQQEPA--NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLAT 431 (987)
T ss_pred ccCchhHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccc
Confidence 446777888888888887665 6666667777778899999999999988763 12234445557788888776632
Q ss_pred --hHHHH----------------------HHHHHh-CC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 036577 160 --PGFVV----------------------LGRILR-SC-FTP--DAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPN 211 (470)
Q Consensus 160 --~a~~~----------------------~~~~~~-~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~ 211 (470)
++..+ .+.... .+ -++ +...|..+..++.. ++.++|...+.+.... .|+
T Consensus 432 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd 508 (987)
T PRK09782 432 PAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPD 508 (987)
T ss_pred hHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCc
Confidence 22222 111111 01 133 66778888888776 7888898877777664 355
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHH
Q 036577 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTY 291 (470)
Q Consensus 212 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 291 (470)
......+...+...|++++|...|+++... +|+...+..+..++.+.|+.++|...++.....+ +.+...+
T Consensus 509 ~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--------~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~ 579 (987)
T PRK09782 509 AWQHRAVAYQAYQVEDYATALAAWQKISLH--------DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALY 579 (987)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--------CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHH
Confidence 444334445556889999999999987553 3444556677788888999999999999888764 2233333
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcC
Q 036577 292 NSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLT 371 (470)
Q Consensus 292 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 371 (470)
..+.......|++++|...+++..+. .|+...+..+..++.+.|++++|...+++..+..+. +...++.+..++...
T Consensus 580 ~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~ 656 (987)
T PRK09782 580 WWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDS 656 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHC
Confidence 34444455669999999999998877 456778888888999999999999999999888654 677888888889999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-hHHHHHHHHHHhcCCHHHHHHH
Q 036577 372 GRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDV-VIYNTLFIGLFEIHQVERAFKL 450 (470)
Q Consensus 372 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~ 450 (470)
|+.++|+..+++..+.. +-+...+..+..++...|++++|+..+++.++. .|+. .+.........+..+++.|.+-
T Consensus 657 G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~ 733 (987)
T PRK09782 657 GDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEE 733 (987)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999888764 447888889999999999999999999999865 4544 4555556666777777788777
Q ss_pred HHHHHH
Q 036577 451 FDEMRR 456 (470)
Q Consensus 451 ~~~m~~ 456 (470)
+++...
T Consensus 734 ~~r~~~ 739 (987)
T PRK09782 734 VGRRWT 739 (987)
T ss_pred HHHHhh
Confidence 777665
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=5.5e-15 Score=128.55 Aligned_cols=348 Identities=13% Similarity=0.141 Sum_probs=265.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIK 185 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (470)
+..++..+|.++++--..+.|.++|++......+.+..+||.+|.+-.-. ...+++.+|.+....||..|+|+++.
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 77899999999999999999999999998887789999999999765432 33789999999999999999999999
Q ss_pred HHHhcCCHHH----HHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH-HHHHHHHHHhc--CCCCCcccCCCHhhHHH
Q 036577 186 GLCAESRIME----AAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIV-ALNLFEEMANG--NGEIGVVCEPNTVTYTT 258 (470)
Q Consensus 186 ~~~~~g~~~~----a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 258 (470)
+..+.|+++. |.+++.+|++.|+.|...+|..++..+++.++..+ +..++.++.+. |+.+....+.|...|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 9999998776 46778889999999999999999999999888744 45555554432 33334445567778888
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhC----CCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 036577 259 IIDGLCKEGFVDKAKELFLKMKDE----NINPN---VVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMD 331 (470)
Q Consensus 259 l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 331 (470)
.+..|.+..+.+-|.++...+... -+.|+ ..-|..+....++....+.....|+.|.-.-+-|+..+...++.
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 999999999999999988776543 11222 23356677777888889999999999998888889999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCC-CH--------H-----HHHHHH-------HHHHHCCCC
Q 036577 332 ELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTG-RV--------N-----RAKELF-------VSMESNRCM 390 (470)
Q Consensus 332 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~-----~A~~~~-------~~~~~~~~~ 390 (470)
+..-.|.++-.-+++.+++..|...+.....-++..+++.. +. . -|..++ .++.+. .
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~ 519 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--D 519 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--c
Confidence 99999999999999999988876555554444444444333 11 0 111111 122222 3
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC----CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 036577 391 HDVFSYSILINGYCKNKEIEGALSLYSEMLSKGI----KPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGV 459 (470)
Q Consensus 391 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 459 (470)
......+.++..+.+.|+.++|.+++.-+..++- .|......-+++.-.+.+....|..+++-|...+.
T Consensus 520 ~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 520 WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 3566778888889999999999999999865532 23333444566777788899999999998876554
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.78 E-value=1.4e-15 Score=144.83 Aligned_cols=390 Identities=14% Similarity=0.093 Sum_probs=263.9
Q ss_pred HHHhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036577 71 RERFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILIN 150 (470)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 150 (470)
++.+--.|..+-..|++++|...|....+..+. ..+..+-.+...+.+.|+++.+...|+...+.. +.+..+...|..
T Consensus 307 aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d-~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~ 384 (1018)
T KOG2002|consen 307 AESFYQLGRSYHAQGDFEKAFKYYMESLKADND-NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGC 384 (1018)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccCCC-CccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHh
Confidence 344445666777888999999999888887776 226667778888999999999999999988874 556677777777
Q ss_pred HHHhcC----CcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HhcCCCCCcchHHHHHHHH
Q 036577 151 CFCKMG----RVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKL----KAFGCEPNVITYSTLINGL 222 (470)
Q Consensus 151 ~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~g~~~~~~~~~~l~~~~ 222 (470)
.|...+ ..+.|..++.+..+.- +.|...|-.+...|-....+.. +.+|... ...+.++.....|.+....
T Consensus 385 Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslh 462 (1018)
T KOG2002|consen 385 LYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLH 462 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHH
Confidence 777765 4566666666666553 4566677666666654443333 5555443 3444456667777777777
Q ss_pred HhcCChHHHHHHHHHHHhcCC---CCCcccCCCHhhHHHHHHHHHhCCCHH-----------------------------
Q 036577 223 CRTGHTIVALNLFEEMANGNG---EIGVVCEPNTVTYTTIIDGLCKEGFVD----------------------------- 270 (470)
Q Consensus 223 ~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~----------------------------- 270 (470)
...|++++|...|......-. .....-.++..+-..+....-..++.+
T Consensus 463 f~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~ 542 (1018)
T KOG2002|consen 463 FRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARD 542 (1018)
T ss_pred HHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHh
Confidence 777777777777777665511 000000122222223333333344444
Q ss_pred -----HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHHH---------
Q 036577 271 -----KAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQG-VQPNVVTFNVIMDELCK--------- 335 (470)
Q Consensus 271 -----~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~--------- 335 (470)
+|...+......+ ..++..+..+...+.+...|..|.+-|....+.- ..+|..+...|...|.+
T Consensus 543 k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ 621 (1018)
T KOG2002|consen 543 KNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNP 621 (1018)
T ss_pred ccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccCh
Confidence 4444444444331 2244445555556666666666666555554432 13466666666665543
Q ss_pred ---cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHH
Q 036577 336 ---NGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGA 412 (470)
Q Consensus 336 ---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 412 (470)
.+..++|+++|.++++..++ |...-|.+.-+++..|++.+|..+|.++.+.. .....+|-.+.++|...|++..|
T Consensus 622 ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~A 699 (1018)
T KOG2002|consen 622 EKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLA 699 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHH
Confidence 23567899999999988765 88888999999999999999999999998864 23556889999999999999999
Q ss_pred HHHHHHHHHC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhhh
Q 036577 413 LSLYSEMLSK-GIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTWTYR 467 (470)
Q Consensus 413 ~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 467 (470)
+++|+...+. ...-+..+...|..++.+.|++.+|.+.+.........-..+.|+
T Consensus 700 IqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN 755 (1018)
T KOG2002|consen 700 IQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFN 755 (1018)
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhH
Confidence 9999987664 445567788899999999999999999999998854444444444
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.77 E-value=2.9e-14 Score=144.43 Aligned_cols=323 Identities=10% Similarity=0.006 Sum_probs=250.6
Q ss_pred cccCChhHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhcCC---hHHHHHH----------------------HHHHHh
Q 036577 82 ITTITPNEAFCIFDYMLNMRP-SPPPVSSFNILFGCLAKNKH---YDTVLSL----------------------FKRLNS 135 (470)
Q Consensus 82 ~~~~~~~~A~~~f~~~~~~~~-~~~~~~~~~~l~~~~~~~~~---~~~A~~~----------------------~~~m~~ 135 (470)
+..|+.++|..+|+......+ ...+...-..++..|.+.+. ..++..+ ++....
T Consensus 387 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (987)
T PRK09782 387 MQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVR 466 (987)
T ss_pred HHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHH
Confidence 467889999999999987422 22445556688888888766 3333333 111111
Q ss_pred C-CC-CC--CHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 036577 136 T-GL-FP--DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPN 211 (470)
Q Consensus 136 ~-~~-~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~ 211 (470)
. +. ++ +...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...|+++... +|+
T Consensus 467 al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~ 541 (987)
T PRK09782 467 LLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMS 541 (987)
T ss_pred hcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCC
Confidence 1 11 34 67788888888877 8999999988888776 456555444556667899999999999998654 455
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHH
Q 036577 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTY 291 (470)
Q Consensus 212 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 291 (470)
...+..+...+.+.|+.++|...+++..... +.+...+..+.......|++++|...+++..+. .|+...+
T Consensus 542 ~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-------P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~ 612 (987)
T PRK09782 542 NEDLLAAANTAQAAGNGAARDRWLQQAEQRG-------LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAY 612 (987)
T ss_pred cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHH
Confidence 5667777888999999999999999998765 344444445555556679999999999999986 4678899
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcC
Q 036577 292 NSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLT 371 (470)
Q Consensus 292 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 371 (470)
..+..++.+.|++++|+..+++..+.. +.+...++.+..++...|++++|+..+++..+..+. +...+..+..++...
T Consensus 613 ~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~l 690 (987)
T PRK09782 613 VARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRL 690 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHC
Confidence 999999999999999999999999885 556778888889999999999999999999998654 778899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 036577 372 GRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLS 421 (470)
Q Consensus 372 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (470)
|++++|+..+++..+.. +-+..+.........+..+++.|.+-+++...
T Consensus 691 Gd~~eA~~~l~~Al~l~-P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 691 DDMAATQHYARLVIDDI-DNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred CCHHHHHHHHHHHHhcC-CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999998864 23445666667777777788888887777654
No 26
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.77 E-value=1.9e-14 Score=136.38 Aligned_cols=363 Identities=14% Similarity=0.108 Sum_probs=283.6
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHH
Q 036577 83 TTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGF 162 (470)
Q Consensus 83 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 162 (470)
..|++++|.+++.+++++.|. ...+|.+|..+|-+.|+.+++...+-..-..+ +.|...|..+.....+.|.+++|.
T Consensus 151 arg~~eeA~~i~~EvIkqdp~--~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPR--NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCcc--chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHH
Confidence 458999999999999999987 88999999999999999999998875554443 667889999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc----hHHHHHHHHHhcCChHHHHHHHHHH
Q 036577 163 VVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVI----TYSTLINGLCRTGHTIVALNLFEEM 238 (470)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~ 238 (470)
-.|.+.++.. +++...+---+..|-+.|+...|..-|.++.....+.|.. .-..++..+...++.+.|.+.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999985 5566666667888999999999999999998764222222 2234466677788889999999998
Q ss_pred HhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCC---------------------------CCCHHHH
Q 036577 239 ANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENI---------------------------NPNVVTY 291 (470)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---------------------------~~~~~~~ 291 (470)
..... ...+...++.++..+.+...++.|......+..... .++..++
T Consensus 307 ~s~~~-----~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 307 LSKEK-----DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred Hhhcc-----ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 87443 245667788999999999999999988877766221 2222221
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCC--CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 036577 292 NSLIHGFCYANDWNEAKCLLIEMMDQGV--QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFC 369 (470)
Q Consensus 292 ~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 369 (470)
-+.-++...+..+....+.....+..+ .-+...|.-+..++...|++.+|+.++..+......-+...|-.++.+|.
T Consensus 382 -rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 382 -RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred -hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 122334455555555566666666653 33566788899999999999999999999998866667889999999999
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH--------CCCCCCHhHHHHHHHHHHhc
Q 036577 370 LTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLS--------KGIKPDVVIYNTLFIGLFEI 441 (470)
Q Consensus 370 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~p~~~~~~~l~~~~~~~ 441 (470)
..|..++|.+.|+.++... +.+...--.|...+.+.|+.|+|.+.++.+.. .+..|+..........+...
T Consensus 461 ~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 9999999999999998864 33666667788889999999999999998542 24566666667777888899
Q ss_pred CCHHHHHHHHHHHHH
Q 036577 442 HQVERAFKLFDEMRR 456 (470)
Q Consensus 442 g~~~~A~~~~~~m~~ 456 (470)
|+.++-......|+.
T Consensus 540 gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 540 GKREEFINTASTLVD 554 (895)
T ss_pred hhHHHHHHHHHHHHH
Confidence 999887666666654
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=7.2e-14 Score=138.74 Aligned_cols=336 Identities=13% Similarity=0.104 Sum_probs=220.3
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 036577 84 TITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFV 163 (470)
Q Consensus 84 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 163 (470)
.|++++|+++|+.+++..|. ++..+..++..+...++.++|++.++++.+. .|+...+..++..+...++..+|++
T Consensus 115 ~gdyd~Aiely~kaL~~dP~--n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPT--NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHH
Confidence 35566666666666665555 4455555555555566666666666555554 2333333333333333444444666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH------------------------------------------
Q 036577 164 VLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFT------------------------------------------ 201 (470)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~------------------------------------------ 201 (470)
.++++.+.. +.+...+..+...+.+.|-...|.++..
T Consensus 191 ~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ 269 (822)
T PRK14574 191 ASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADK 269 (822)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 666665553 3344444555555444443333332222
Q ss_pred ------HHHhc-CCCCCc-chH----HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCH
Q 036577 202 ------KLKAF-GCEPNV-ITY----STLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFV 269 (470)
Q Consensus 202 ------~~~~~-g~~~~~-~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 269 (470)
.+... +..|.. ..| .-.+-++...|+..++++.|+.+...+ .+....+-..+.++|...+++
T Consensus 270 ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~------~~~P~y~~~a~adayl~~~~P 343 (822)
T PRK14574 270 ALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEG------YKMPDYARRWAASAYIDRRLP 343 (822)
T ss_pred HHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcC------CCCCHHHHHHHHHHHHhcCCc
Confidence 11110 000111 111 112334556677777788888777665 333456778899999999999
Q ss_pred HHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-----------CC--CH-hHHHHHH
Q 036577 270 DKAKELFLKMKDEN-----INPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGV-----------QP--NV-VTFNVIM 330 (470)
Q Consensus 270 ~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----------~~--~~-~~~~~l~ 330 (470)
++|..+|+.+.... .+++......|..+|...+++++|..+++.+.+... .| |- ..+..++
T Consensus 344 ~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a 423 (822)
T PRK14574 344 EKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLV 423 (822)
T ss_pred HHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHH
Confidence 99999999987643 233444567899999999999999999999987411 12 22 2344567
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChh
Q 036577 331 DELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIE 410 (470)
Q Consensus 331 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 410 (470)
..+...|+..+|++.++.+....+. |......+.+.+...|.+.+|+..++...... +-+..+....+.++...|+++
T Consensus 424 ~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~ 501 (822)
T PRK14574 424 QSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWH 501 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHH
Confidence 7889999999999999999888655 89999999999999999999999997776653 447888888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHH
Q 036577 411 GALSLYSEMLSKGIKPDVVIYNTL 434 (470)
Q Consensus 411 ~A~~~~~~~~~~~~~p~~~~~~~l 434 (470)
+|..+.+.+.+. .|+......|
T Consensus 502 ~A~~~~~~l~~~--~Pe~~~~~~l 523 (822)
T PRK14574 502 QMELLTDDVISR--SPEDIPSQEL 523 (822)
T ss_pred HHHHHHHHHHhh--CCCchhHHHH
Confidence 999999999865 5554433333
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.73 E-value=1.8e-14 Score=137.49 Aligned_cols=368 Identities=11% Similarity=0.093 Sum_probs=244.8
Q ss_pred cccCChhHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCc
Q 036577 82 ITTITPNEAFCIFDYMLNMRPS-PPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDL--YTYNILINCFCKMGRV 158 (470)
Q Consensus 82 ~~~~~~~~A~~~f~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~ 158 (470)
...|++..+..+...+...... +.-...|-.+.+++-..|++++|...|.+..+.. ++. ..+.-+.+.+...|+.
T Consensus 281 yfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dl 358 (1018)
T KOG2002|consen 281 YFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDL 358 (1018)
T ss_pred hhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchH
Confidence 4567999999999988775532 1235568899999999999999999998877663 444 4455688999999999
Q ss_pred chHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 036577 159 SPGFVVLGRILRSCFTPDAVTFNSLIKGLCAES----RIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNL 234 (470)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~ 234 (470)
+.+...|+.+.+.. +.+..+...|...|+..+ ..+.|..++.+..+. .+.|...|-.+...+....-+. ++.+
T Consensus 359 e~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-~~~d~~a~l~laql~e~~d~~~-sL~~ 435 (1018)
T KOG2002|consen 359 EESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ-TPVDSEAWLELAQLLEQTDPWA-SLDA 435 (1018)
T ss_pred HHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHhcChHH-HHHH
Confidence 99999999999873 556777778888887765 567777888777765 3567778888877776554443 3666
Q ss_pred HHHHH----hcCCCCCcccCCCHhhHHHHHHHHHh-CCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCCHH--
Q 036577 235 FEEMA----NGNGEIGVVCEPNTVTYTTIIDGLCK-EGFVDKAKELFLKMKDE--NINPNVVTYNSLIHGFCYANDWN-- 305 (470)
Q Consensus 235 ~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~-- 305 (470)
|..+. ..+..++..+.-|..++...+..+.+ .+.++.|......-... |-.+++.+--.+..++-..++.+
T Consensus 436 ~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A 515 (1018)
T KOG2002|consen 436 YGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVA 515 (1018)
T ss_pred HHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHH
Confidence 65544 33333222223355555555544443 23455555553322211 11122222222333333333444
Q ss_pred --------------------------------HHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 036577 306 --------------------------------EAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIG 353 (470)
Q Consensus 306 --------------------------------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 353 (470)
+|...+.+..... ..++..+..+...+.....+..|..-|+.+.+.-
T Consensus 516 ~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~ 594 (1018)
T KOG2002|consen 516 EEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKT 594 (1018)
T ss_pred HHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhh
Confidence 4444444444432 3344444545555555555555555555444331
Q ss_pred -CCCCHhHHHHHHHHHHc------------CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 036577 354 -VRPNAFVYNTLMDGFCL------------TGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEML 420 (470)
Q Consensus 354 -~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 420 (470)
..+|......|.+.|.. .+..++|.++|.++++.. +.|...-|.+.-+++..|++.+|..+|.+.+
T Consensus 595 ~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVr 673 (1018)
T KOG2002|consen 595 STKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVR 673 (1018)
T ss_pred ccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHH
Confidence 22466666667765542 245788999999988875 5588889999999999999999999999999
Q ss_pred HCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036577 421 SKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRD 457 (470)
Q Consensus 421 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (470)
+... -...+|-.+.++|..+|++..|+++|+...+.
T Consensus 674 Ea~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 674 EATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred HHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8643 35678999999999999999999999998754
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.73 E-value=1.7e-14 Score=126.49 Aligned_cols=370 Identities=15% Similarity=0.163 Sum_probs=239.5
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036577 78 GEGDITTITPNEAFCIFDYMLNMRPSPPP----VSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153 (470)
Q Consensus 78 ~~~~~~~~~~~~A~~~f~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 153 (470)
|..+++..++..|+++++-.+.+-|. .+ ....+.+...+.+.|+++.|+..|+...+. .|+..+-..|+-++.
T Consensus 244 gni~~kkr~fskaikfyrmaldqvps-ink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f 320 (840)
T KOG2003|consen 244 GNIHFKKREFSKAIKFYRMALDQVPS-INKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAF 320 (840)
T ss_pred cceeeehhhHHHHHHHHHHHHhhccc-cchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhhe
Confidence 34566677899999999988887665 33 334566666778899999999999988776 577777666777777
Q ss_pred hcCCcchHHHHHHHHHhCCC------------CCCHHHHHHHH-----HHHHhcC--CHHHHHHHHHHHHhcCCCCCcch
Q 036577 154 KMGRVSPGFVVLGRILRSCF------------TPDAVTFNSLI-----KGLCAES--RIMEAAALFTKLKAFGCEPNVIT 214 (470)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~------------~~~~~~~~~l~-----~~~~~~g--~~~~a~~~~~~~~~~g~~~~~~~ 214 (470)
..|+-++..+.|.+|+.... .|+....+.-+ +-.-+.+ +-++++-.--++..--+.|+-..
T Consensus 321 ~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~ 400 (840)
T KOG2003|consen 321 AIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA 400 (840)
T ss_pred ecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc
Confidence 78888999999998876322 22222222221 1111111 11222211112221111222100
Q ss_pred ---H------------------HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccc------------------------
Q 036577 215 ---Y------------------STLINGLCRTGHTIVALNLFEEMANGNGEIGVVC------------------------ 249 (470)
Q Consensus 215 ---~------------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------------------------ 249 (470)
| ..-...+.+.|+++.|.++++-+...+.......
T Consensus 401 g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad 480 (840)
T KOG2003|consen 401 GCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYAD 480 (840)
T ss_pred ccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHH
Confidence 0 0011235677888888888777765542110000
Q ss_pred ------CCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 036577 250 ------EPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNV 323 (470)
Q Consensus 250 ------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 323 (470)
.-+......-.+.....|++++|.+.|++.+..+-.-....|+ +.-.+-..|+.++|++.|-++...- ..+.
T Consensus 481 ~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il-~nn~ 558 (840)
T KOG2003|consen 481 IALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAIL-LNNA 558 (840)
T ss_pred HHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHH-HhhH
Confidence 0011111111112224688899999998888753222222233 2334667889999999988765431 3466
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036577 324 VTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGY 403 (470)
Q Consensus 324 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (470)
..+..+...|....+..+|++++.+.... ++.|+..+..|...|-+.|+-..|.+.+-.--.. ++-+..+...|...|
T Consensus 559 evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayy 636 (840)
T KOG2003|consen 559 EVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYY 636 (840)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHH
Confidence 77778888888889999999998887765 4557888999999999999999888776443222 344888888888888
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 036577 404 CKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLF-EIHQVERAFKLFDEMRR 456 (470)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 456 (470)
....-+++|+.+|++.. -+.|+..-|..++..|. +.|++++|.++++...+
T Consensus 637 idtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 637 IDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 88889999999999876 46899999988886554 67999999999988865
No 30
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.72 E-value=6e-14 Score=130.82 Aligned_cols=284 Identities=13% Similarity=0.107 Sum_probs=164.9
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHH
Q 036577 120 NKHYDTVLSLFKRLNSTGLFPDLYTY-NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFN--SLIKGLCAESRIMEA 196 (470)
Q Consensus 120 ~~~~~~A~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a 196 (470)
.|++++|.+.+....+.. +++..+ ........+.|+++.|.+.+.++.+. .|+...+. .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 466666665555544331 122222 22233335666666666666666553 33332221 224555666666666
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCH------hhHHHHHHHHHhCCCHH
Q 036577 197 AALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNT------VTYTTIIDGLCKEGFVD 270 (470)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~ 270 (470)
...++++.+.. |-+......+...|.+.|++++|.+++..+.+... ..+.. .+|..++.......+.+
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~-----~~~~~~~~l~~~a~~~l~~~~~~~~~~~ 246 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV-----GDEEHRAMLEQQAWIGLMDQAMADQGSE 246 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 66666665543 23445555566666666666666666666655443 12221 23334444444444555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036577 271 KAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMI 350 (470)
Q Consensus 271 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 350 (470)
...++++.+... .+.+......+...+...|+.++|..++++..+. +++.... ++.+....++.+++.+..+...
T Consensus 247 ~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~l 321 (398)
T PRK10747 247 GLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQI 321 (398)
T ss_pred HHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHH
Confidence 555666555433 2346666667777777777777777777777664 4444211 2233334577777777777777
Q ss_pred HcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 036577 351 QIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLS 421 (470)
Q Consensus 351 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (470)
+..+. |...+..+...+.+.|++++|.+.|+...+. .|+...+..+..++.+.|+.++|..++++...
T Consensus 322 k~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 322 KQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred hhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66443 5666777777777777777777777777765 46777777777777777777777777776653
No 31
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.72 E-value=6.2e-14 Score=131.47 Aligned_cols=121 Identities=4% Similarity=-0.054 Sum_probs=64.4
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCcc
Q 036577 82 ITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDL--YTYNILINCFCKMGRVS 159 (470)
Q Consensus 82 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~ 159 (470)
...|+++.|.+.+....+..|. +...+-....++.+.|+++.|.+.+.+..+.. |+. .........+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~--~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAE--PVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHH
Confidence 3455666666666555554433 23333344455555566666666666654432 222 22233355555566666
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036577 160 PGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFG 207 (470)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 207 (470)
.|.+.++.+.+.. +.+..++..+...+...|++++|.+.+..+.+.+
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~ 217 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG 217 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 6666666665553 3344555556666666666666666666665554
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=1.3e-13 Score=120.05 Aligned_cols=340 Identities=15% Similarity=0.172 Sum_probs=188.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCcchH-HHHHHHHHhCC----------
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM--GRVSPG-FVVLGRILRSC---------- 172 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~--g~~~~a-~~~~~~~~~~~---------- 172 (470)
.+.+=|.|+.. ..+|...++.-+|+.|.+.|++-+...-..|+..-+-. .++--+ .+.|-.|.+.|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 34444555543 34667777777777777777666655554444332221 111111 11111111111
Q ss_pred ---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 036577 173 ---------FTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243 (470)
Q Consensus 173 ---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 243 (470)
.+.+..+|..+|.++|+--..+.|.++|++-.....+.+..+||.+|.+-.-.. ..+++.+|....
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqk- 268 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQK- 268 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhh-
Confidence 234556777777777777777777777777766666667777777765533222 256667777666
Q ss_pred CCCcccCCCHhhHHHHHHHHHhCCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHHC-
Q 036577 244 EIGVVCEPNTVTYTTIIDGLCKEGFVDK----AKELFLKMKDENINPNVVTYNSLIHGFCYANDWNE-AKCLLIEMMDQ- 317 (470)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~- 317 (470)
..||..|+|+++.+..+.|+++. |.+++.+|.+.|+.|...+|..+|..+.+.++..+ +..++.+++..
T Consensus 269 -----m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~l 343 (625)
T KOG4422|consen 269 -----MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSL 343 (625)
T ss_pred -----cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhh
Confidence 67777777777777777776554 45566667777777777777777777777666533 33344443321
Q ss_pred ---CC----CCCHhHHHHHHHHHHHcCCHHHHHHHHHHH-----------------------------------------
Q 036577 318 ---GV----QPNVVTFNVIMDELCKNGKMDEASRLLDLM----------------------------------------- 349 (470)
Q Consensus 318 ---~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----------------------------------------- 349 (470)
.+ +.|...|...|..|.+..+.+.|.++..-+
T Consensus 344 tGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~ 423 (625)
T KOG4422|consen 344 TGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYED 423 (625)
T ss_pred ccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 223444555556666666655555554433
Q ss_pred -HHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-Ch--------hH-----HHH
Q 036577 350 -IQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNK-EI--------EG-----ALS 414 (470)
Q Consensus 350 -~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~~-----A~~ 414 (470)
+-.-.-|+..+...++++....|.++-..++|..++..|...+...-.-++..+++.. .+ .. |..
T Consensus 424 lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad 503 (625)
T KOG4422|consen 424 LVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAAD 503 (625)
T ss_pred hccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHH
Confidence 3222334444555555555555666666666666655553333333333333333322 11 00 011
Q ss_pred HH-------HHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 036577 415 LY-------SEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDG 458 (470)
Q Consensus 415 ~~-------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 458 (470)
++ .+|... .......+..+-.+.+.|..++|.+++..+.+.+
T Consensus 504 ~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 504 IKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred HHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 11 112222 2234455666677889999999999999986543
No 33
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.71 E-value=1.1e-13 Score=129.79 Aligned_cols=291 Identities=8% Similarity=-0.055 Sum_probs=190.6
Q ss_pred HhcCCcchHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc--hHHHHHHHHHhcCChH
Q 036577 153 CKMGRVSPGFVVLGRILRSCFTPD-AVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVI--TYSTLINGLCRTGHTI 229 (470)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~--~~~~l~~~~~~~g~~~ 229 (470)
...|+++.|.+.+.+..+.. |+ ...+-.....+...|+.+.|.+.+.+..+.. |+.. ........+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHH
Confidence 35677888887777766652 33 3334444566777788888888887776542 4432 2333466677788888
Q ss_pred HHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHH---HccCCHH
Q 036577 230 VALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYN-SLIHGF---CYANDWN 305 (470)
Q Consensus 230 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~---~~~~~~~ 305 (470)
.|...++.+.+.. +.+..++..+...+...|++++|.+.++.+.+.+.. +...+. .-..++ ...+..+
T Consensus 171 ~Al~~l~~l~~~~-------P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 171 AARHGVDKLLEMA-------PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred HHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888887765 456677778888888888888888888888776543 222221 111111 2222333
Q ss_pred HHHHHHHHHHHCCC---CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHH-HHHHHHHHcCCCHHHHHHHH
Q 036577 306 EAKCLLIEMMDQGV---QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVY-NTLMDGFCLTGRVNRAKELF 381 (470)
Q Consensus 306 ~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~ 381 (470)
++.+.+..+.+... +.+...+..++..+...|+.++|.+++++..+..+......+ ..........++.+.+.+.+
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 33334444443321 236777888888888888999999888888886443221111 11112223457778888888
Q ss_pred HHHHHCCCCCCH--HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 382 VSMESNRCMHDV--FSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 382 ~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
+...+.. +-|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 323 e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 323 EKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8777653 3355 667788888999999999999999543334578888888888999999999999999888653
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.71 E-value=8.1e-17 Score=143.50 Aligned_cols=262 Identities=16% Similarity=0.122 Sum_probs=99.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHH
Q 036577 182 SLIKGLCAESRIMEAAALFTKLKAFG-CEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTII 260 (470)
Q Consensus 182 ~l~~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 260 (470)
.+...+.+.|++++|++++++..... .+.+...|..+.......++.++|.+.++++...+ +.+...+..++
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-------~~~~~~~~~l~ 85 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-------KANPQDYERLI 85 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------ccccccccccc
Confidence 45667777788888888885544332 23344555556666667778888888888887665 33555666666
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHHHcCCH
Q 036577 261 DGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQG-VQPNVVTFNVIMDELCKNGKM 339 (470)
Q Consensus 261 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~ 339 (470)
.. ...+++++|.++++...+.. ++...+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.
T Consensus 86 ~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~ 162 (280)
T PF13429_consen 86 QL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP 162 (280)
T ss_dssp -----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH
T ss_pred cc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 66 67788888888877765542 455666777777888888888888888866532 245666777777888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 036577 340 DEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEM 419 (470)
Q Consensus 340 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (470)
++|...+++.++..+. |......++..+...|+.+++..+++...+.. +.|...+..+..+|...|+.++|+.+|++.
T Consensus 163 ~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~ 240 (280)
T PF13429_consen 163 DKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKA 240 (280)
T ss_dssp HHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccc
Confidence 8888888888887543 56777788888888888888777777766543 345567778888888888888888888888
Q ss_pred HHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 420 LSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 420 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
.+.. +.|+.....+..++...|+.++|.++.+++.+
T Consensus 241 ~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 241 LKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred cccc-cccccccccccccccccccccccccccccccc
Confidence 7642 22667777788888888888888888776643
No 35
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.71 E-value=1.2e-13 Score=128.87 Aligned_cols=284 Identities=11% Similarity=0.030 Sum_probs=223.1
Q ss_pred hcCCcchHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHH--HHHHHHHhcCChHH
Q 036577 154 KMGRVSPGFVVLGRILRSCFTPDAVTFNSL-IKGLCAESRIMEAAALFTKLKAFGCEPNVITYS--TLINGLCRTGHTIV 230 (470)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~--~l~~~~~~~g~~~~ 230 (470)
..|++++|.+.+....+.. ++...+..+ .....+.|+++.|.+.+.++.+. .|+..... .....+...|+++.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 3699999998888766542 223333333 45558999999999999999874 45654333 33668889999999
Q ss_pred HHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHccCC
Q 036577 231 ALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV-------VTYNSLIHGFCYAND 303 (470)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~ 303 (470)
|.+.++++.+.. +.++.....+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+
T Consensus 172 Al~~l~~~~~~~-------P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~ 244 (398)
T PRK10747 172 ARHGVDKLLEVA-------PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG 244 (398)
T ss_pred HHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999998876 667889999999999999999999999999987654322 133334444445556
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHH
Q 036577 304 WNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVS 383 (470)
Q Consensus 304 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 383 (470)
.+...++++...+. .+.++.....+...+...|+.++|..++++..+. .++.... ++.+....++.+++.+..+.
T Consensus 245 ~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~ 319 (398)
T PRK10747 245 SEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQ 319 (398)
T ss_pred HHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHH
Confidence 66777777766443 2557788889999999999999999999999885 4455322 33444466999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 384 MESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 384 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
..+.. +-|...+..+...+.+.|++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++-..
T Consensus 320 ~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 320 QIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 98774 558888999999999999999999999999965 78999999999999999999999999998764
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.70 E-value=1.8e-16 Score=141.26 Aligned_cols=262 Identities=16% Similarity=0.145 Sum_probs=87.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 036577 112 ILFGCLAKNKHYDTVLSLFKRLNSTG-LFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAE 190 (470)
Q Consensus 112 ~l~~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (470)
.+...+.+.|++++|++++++..... .+.+...|..+...+...++++.|.+.++++.+.+ +.+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 44666667777777777775443332 13344455555556666677777777777776654 2244555556655 567
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHH
Q 036577 191 SRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVD 270 (470)
Q Consensus 191 g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 270 (470)
+++++|.+++++..+. .++...+..++..+.+.++++++.++++.+..... .+.+...|..+...+.+.|+.+
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~a~~~~~~G~~~ 163 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA-----APDSARFWLALAEIYEQLGDPD 163 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T--------T-HHHHHHHHHHHHHCCHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCCHH
Confidence 7777777776665443 24555566666667777777777777777654332 2456666777777777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036577 271 KAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMI 350 (470)
Q Consensus 271 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 350 (470)
+|++.+++..+.. +.|......++..+...|+.+++.+++....+.. +.|...+..+..++...|+.++|...+++..
T Consensus 164 ~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 164 KALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccc
Confidence 7777777776652 2245566667777777777777666666665553 3444556666777777777777777777776
Q ss_pred HcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 036577 351 QIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSME 385 (470)
Q Consensus 351 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (470)
+..+. |+.....+.+++...|+.++|.++..++.
T Consensus 242 ~~~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 242 KLNPD-DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHSTT--HHHHHHHHHHHT----------------
T ss_pred ccccc-ccccccccccccccccccccccccccccc
Confidence 65433 66666677777777777777777665543
No 37
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.69 E-value=2.1e-13 Score=114.66 Aligned_cols=291 Identities=17% Similarity=0.124 Sum_probs=121.2
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHH
Q 036577 121 KHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTP---DAVTFNSLIKGLCAESRIMEAA 197 (470)
Q Consensus 121 ~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~ 197 (470)
++.++|+++|-+|.+.. +.+..+..+|.+.|.+.|..+.|+.+++.+.++.--+ ...+...|.+-|...|-++.|+
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 33444444444444322 2223333344444444444444444444444321000 0112233444444455555555
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHH
Q 036577 198 ALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFL 277 (470)
Q Consensus 198 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 277 (470)
.+|..+.+.| .--......|+..|-...+|++|+++-+++...++... -..=...|.-+...+....+.+.|..++.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~--~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY--RVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc--hhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 5555444432 11223344444455555555555555544444432100 00001223344444444455555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 036577 278 KMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPN 357 (470)
Q Consensus 278 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 357 (470)
+..+.+. ..+..--.+.+.+...|+++.|.+.++...+++..--..+...+..+|.+.|+.++...++..+.+....++
T Consensus 205 kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 205 KALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred HHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 5544321 122222233444555555555555555555553222234445555555555555555555555555432222
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---cCChhHHHHHHHHHH
Q 036577 358 AFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCK---NKEIEGALSLYSEML 420 (470)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~ 420 (470)
. -..+.+......-.+.|..++.+-+.. .|+...+..+|..-.. .|...+.+.+++.|+
T Consensus 284 ~--~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 284 A--ELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred H--HHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 2 222222222233333444333333322 3555555555554332 233444444555554
No 38
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.69 E-value=1.5e-12 Score=119.42 Aligned_cols=353 Identities=12% Similarity=0.054 Sum_probs=264.2
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchH
Q 036577 82 ITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPG 161 (470)
Q Consensus 82 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 161 (470)
.+.+.++-|+.+|..+++..|. +...|...+..--..|..++...+|++.... ++.....|......+...|++..|
T Consensus 527 ~k~~~~~carAVya~alqvfp~--k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~a 603 (913)
T KOG0495|consen 527 EKRPAIECARAVYAHALQVFPC--KKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAA 603 (913)
T ss_pred HhcchHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHH
Confidence 3445567788888888877765 6777877777666778888888888887765 244455566666777777888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 036577 162 FVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241 (470)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 241 (470)
..++..+.+.. +.+...|-+-+..-..+.+++.|..+|.+.... .|+...|.--+...--.+..++|++++++..+.
T Consensus 604 r~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~ 680 (913)
T KOG0495|consen 604 RVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS 680 (913)
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh
Confidence 88888887764 446778888888888888888888888887764 477777777666666678888888888888776
Q ss_pred CCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 036577 242 NGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQP 321 (470)
Q Consensus 242 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 321 (470)
. +.-...|..+...+-+.++.+.|.+.|..-.+. ++-..-.|-.+...=-+.|.+-.|..+++.....+ +.
T Consensus 681 f-------p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk 751 (913)
T KOG0495|consen 681 F-------PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PK 751 (913)
T ss_pred C-------CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CC
Confidence 5 444566777778888888888888877665543 34455567777777777788888888888887665 66
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036577 322 NVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILIN 401 (470)
Q Consensus 322 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 401 (470)
+...|-..|..-.+.|+.++|..+..+..+.- +.+...|..-|....+.++-....+.+++ +.-|....-.+..
T Consensus 752 ~~~lwle~Ir~ElR~gn~~~a~~lmakALQec-p~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~ 825 (913)
T KOG0495|consen 752 NALLWLESIRMELRAGNKEQAELLMAKALQEC-PSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAK 825 (913)
T ss_pred cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHH
Confidence 77788888888888888888888888887763 33667777777776666664444444332 2447778888889
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 402 GYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
.+....++++|.+.|.+.++.+.. +-.+|..+...+.++|.-+.-.+++++...
T Consensus 826 lfw~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 826 LFWSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 999999999999999999976432 456899899999999998888899888875
No 39
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.69 E-value=5.6e-13 Score=126.60 Aligned_cols=332 Identities=13% Similarity=0.094 Sum_probs=258.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 036577 112 ILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAES 191 (470)
Q Consensus 112 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 191 (470)
..+..+...|++++|.+++.+.++.. +.+...|..|...|-+.|+.+++...+-.+.... +.|...|..+.....+.|
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcc
Confidence 33444455699999999999999986 6788899999999999999999988776655443 557799999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHh----hHHHHHHHHHhCC
Q 036577 192 RIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTV----TYTTIIDGLCKEG 267 (470)
Q Consensus 192 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g 267 (470)
.++.|.-.|.+..+.. +++...+-.-...|-+.|+...|...|.++.+..+ +.|.. .....++.+...+
T Consensus 222 ~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p------~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 222 NINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP------PVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred cHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC------chhHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999864 34555555567788999999999999999988762 22222 2334456677788
Q ss_pred CHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC---------------------------
Q 036577 268 FVDKAKELFLKMKDE-NINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGV--------------------------- 319 (470)
Q Consensus 268 ~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--------------------------- 319 (470)
+.+.|.+.++..... +-..+...++.++..|.+...++.+......+.....
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~ 374 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL 374 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence 889999999887763 2234566788899999999999999998888766211
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 036577 320 QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIG--VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYS 397 (470)
Q Consensus 320 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 397 (470)
.++... -.++-++......+....+.......+ +.-+...|.-+.+++...|++.+|..+|..+.....--+...|-
T Consensus 375 s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~ 453 (895)
T KOG2076|consen 375 SYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWY 453 (895)
T ss_pred Cccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhH
Confidence 222222 123344555556666666666666665 44456788999999999999999999999998875555788999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036577 398 ILINGYCKNKEIEGALSLYSEMLSKGIKPD-VVIYNTLFIGLFEIHQVERAFKLFDEMR 455 (470)
Q Consensus 398 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (470)
.+..+|...|.+++|.+.|+..+.. .|+ ...-.+|...+.+.|+.++|.+.++.+.
T Consensus 454 ~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 454 KLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999999999999965 443 4466678888999999999999999876
No 40
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=8.3e-13 Score=117.09 Aligned_cols=373 Identities=14% Similarity=0.099 Sum_probs=259.9
Q ss_pred HHHHHHhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHH
Q 036577 68 KFLRERFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPD-LYTYN 146 (470)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~ 146 (470)
.-.+..++..|..+...|++++|++.+.+++...|. .+.-|.....+|...|+|+++++.--+.++.+ |+ ...+.
T Consensus 112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~--epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~ 187 (606)
T KOG0547|consen 112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPD--EPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALL 187 (606)
T ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCC--CchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHH
Confidence 334556788888999999999999999999998876 36778999999999999999999888887763 43 34566
Q ss_pred HHHHHHHhcCCcchHHHH------------------HHHHH------------h-CC--CCCCHHHHHHHHHHHHh----
Q 036577 147 ILINCFCKMGRVSPGFVV------------------LGRIL------------R-SC--FTPDAVTFNSLIKGLCA---- 189 (470)
Q Consensus 147 ~li~~~~~~g~~~~a~~~------------------~~~~~------------~-~~--~~~~~~~~~~l~~~~~~---- 189 (470)
.-..++-..|++++|+.= .++.+ + .+ +-|+....++....+..
T Consensus 188 RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~ 267 (606)
T KOG0547|consen 188 RRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKP 267 (606)
T ss_pred HHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccc
Confidence 666666677776665431 11111 1 11 22343333333332210
Q ss_pred ---------------------cC---CHHHHHHHHHHHHh---cCCCCC---------cchHHHHHHHHHhcCChHHHHH
Q 036577 190 ---------------------ES---RIMEAAALFTKLKA---FGCEPN---------VITYSTLINGLCRTGHTIVALN 233 (470)
Q Consensus 190 ---------------------~g---~~~~a~~~~~~~~~---~g~~~~---------~~~~~~l~~~~~~~g~~~~a~~ 233 (470)
.+ .+..|...+.+-.. .....+ ..+.......+.-.|+...|.+
T Consensus 268 ~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~ 347 (606)
T KOG0547|consen 268 LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQE 347 (606)
T ss_pred cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhh
Confidence 00 12222222221110 000111 1111112222345688889999
Q ss_pred HHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 036577 234 LFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIE 313 (470)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 313 (470)
-|+..+... +.+...|--+..+|....+.++..+.|++..+.+ +.+..+|.--.+.+.-.+++++|..=|++
T Consensus 348 d~~~~I~l~-------~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 348 DFDAAIKLD-------PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred hHHHHHhcC-------cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 999998876 3344448888889999999999999999998875 33667777777778888999999999999
Q ss_pred HHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC---
Q 036577 314 MMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCM--- 390 (470)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--- 390 (470)
.+... +.+...|..+..+..+.+++++++..|++.++. ++--+..|+.....+..++++++|.+.|+..++....
T Consensus 420 ai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~ 497 (606)
T KOG0547|consen 420 AISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHL 497 (606)
T ss_pred HhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccc
Confidence 98875 445667777777778899999999999999987 3446789999999999999999999999998775311
Q ss_pred --CCHH--HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 391 --HDVF--SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 391 --~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
.+.. +.-.++..-. .+++..|++++++.++.+.+ ....|..|...-.+.|+.++|+++|++...
T Consensus 498 ~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 498 IIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1111 1222222222 38999999999999976443 456888999999999999999999998753
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.3e-12 Score=115.06 Aligned_cols=294 Identities=10% Similarity=0.041 Sum_probs=206.0
Q ss_pred HHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCcchHHHHHHHHHhcC
Q 036577 149 INCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCE--PNVITYSTLINGLCRTG 226 (470)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~--~~~~~~~~l~~~~~~~g 226 (470)
..++....+.+++.+-.+.....|++.+...-+....+.-...++++|+.+|+++.+...- -|..+|..++-. +..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hhh
Confidence 3455555667777777777777777766666666666677778888888888888765210 134555555433 222
Q ss_pred ChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH
Q 036577 227 HTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNE 306 (470)
Q Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 306 (470)
+-. .--+-+...+.+ +--+.|...+.+-|+-.++.++|...|+...+.+ +.....|+.+..-|....+...
T Consensus 312 ~sk-Ls~LA~~v~~id-------KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~A 382 (559)
T KOG1155|consen 312 KSK-LSYLAQNVSNID-------KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHA 382 (559)
T ss_pred hHH-HHHHHHHHHHhc-------cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHH
Confidence 111 111112222222 3344567777788888888899999998888764 2356778888888888888899
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 036577 307 AKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMES 386 (470)
Q Consensus 307 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 386 (470)
|+.-++..++.+ +.|-..|..+.++|.-.+...-|+-.|++..+..+. |...|.+|+++|.+.++.++|++.|.+...
T Consensus 383 Ai~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 383 AIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 999998888876 668888888999999888888888888888887544 788899999999999999999999988887
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 387 NRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK----GIKPD--VVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 387 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
.+ ..+...+..+...|-+.++.++|...|++-++. |...+ .....-|..-+.+.+++++|..+......
T Consensus 461 ~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 461 LG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred cc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 76 335578888888899999999988888876652 32222 11222245566677888777766555443
No 42
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=3.1e-12 Score=113.06 Aligned_cols=364 Identities=14% Similarity=0.140 Sum_probs=249.5
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchH
Q 036577 82 ITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPG 161 (470)
Q Consensus 82 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 161 (470)
.+.+++..|..+|+.++..+.. +...|-..+..-.+++....|..++++....- +.-...|-..+.+=-..|++.-|
T Consensus 84 esq~e~~RARSv~ERALdvd~r--~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYR--NITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGA 160 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccc--cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHH
Confidence 3456788999999999987755 88899999999999999999999999988762 22334566666666778999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 036577 162 FVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241 (470)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 241 (470)
.++|++-.+- .|+...|++.|+.=.+.+.++.|..+|++..- +.|++.+|.-....-.+.|....|..+|+.+.+.
T Consensus 161 RqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 161 RQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEF 236 (677)
T ss_pred HHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 9999998874 89999999999999999999999999999875 3588888887777777888888888887777654
Q ss_pred CCCC-----------------------------------------------------C---------------------c
Q 036577 242 NGEI-----------------------------------------------------G---------------------V 247 (470)
Q Consensus 242 ~~~~-----------------------------------------------------~---------------------~ 247 (470)
-++- | .
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 3210 0 0
Q ss_pred ccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHH---HccCCHHHHHHHHHHHHHC
Q 036577 248 VCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV-------VTYNSLIHGF---CYANDWNEAKCLLIEMMDQ 317 (470)
Q Consensus 248 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~---~~~~~~~~a~~~~~~~~~~ 317 (470)
..+-|-.+|-..++.-...|+.+...++|+..... ++|-. .+|.-+-.++ ....|.+.+.++++..++.
T Consensus 317 ~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 317 KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 01111122222233333334444444444444332 12110 0000000000 1233444444444444432
Q ss_pred CCCCCHhHHHHH----HHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH
Q 036577 318 GVQPNVVTFNVI----MDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDV 393 (470)
Q Consensus 318 ~~~~~~~~~~~l----~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 393 (470)
++....||..+ ...-.++.++..|.+++...+ |.-|-..+|...|..-.+.++++.+..+++..++.+ +-|.
T Consensus 396 -IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c 471 (677)
T KOG1915|consen 396 -IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENC 471 (677)
T ss_pred -cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhh
Confidence 12222333322 222234566667777776665 446777888888888888999999999999999875 4488
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036577 394 FSYSILINGYCKNKEIEGALSLYSEMLSKG-IKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRD 457 (470)
Q Consensus 394 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (470)
.+|......-...|+.|.|..+|+-+++.. +......|...|+--...|.++.|..+++++.+.
T Consensus 472 ~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 472 YAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 899988888889999999999999998763 2334567888888888999999999999999874
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=1.1e-12 Score=115.36 Aligned_cols=357 Identities=15% Similarity=0.112 Sum_probs=247.3
Q ss_pred HHHhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---------
Q 036577 71 RERFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPD--------- 141 (470)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~--------- 141 (470)
...+.+.|...++.|+++.|+.-|+.+.+..|. -...+|.++ ++..-|+-++..+.|.+|......+|
T Consensus 276 ikil~nigvtfiq~gqy~dainsfdh~m~~~pn--~~a~~nl~i-~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~d 352 (840)
T KOG2003|consen 276 IKILNNIGVTFIQAGQYDDAINSFDHCMEEAPN--FIAALNLII-CAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKD 352 (840)
T ss_pred HHHHhhcCeeEEecccchhhHhhHHHHHHhCcc--HHhhhhhhh-hheecCcHHHHHHHHHHHhcCCCCCCcccccCCcC
Confidence 345678888899999999999999999988764 344555554 44557888999999999877532332
Q ss_pred ---HHHHHHHHH-----HHHhcC--CcchHHHHHHHHHhCCCCCCHH-------------HH--------HHHHHHHHhc
Q 036577 142 ---LYTYNILIN-----CFCKMG--RVSPGFVVLGRILRSCFTPDAV-------------TF--------NSLIKGLCAE 190 (470)
Q Consensus 142 ---~~~~~~li~-----~~~~~g--~~~~a~~~~~~~~~~~~~~~~~-------------~~--------~~l~~~~~~~ 190 (470)
....+..+. -.-+.+ +.++++-.-.+++.--+.|+-. .+ -.-...|.++
T Consensus 353 dp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~ 432 (840)
T KOG2003|consen 353 DPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKN 432 (840)
T ss_pred CcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhc
Confidence 222222221 111111 1122221112222111122210 00 0123467889
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHHHHHH------------------------------------HHHhcCChHHHHHH
Q 036577 191 SRIMEAAALFTKLKAFGCEPNVITYSTLIN------------------------------------GLCRTGHTIVALNL 234 (470)
Q Consensus 191 g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~------------------------------------~~~~~g~~~~a~~~ 234 (470)
|+++.|+++++-+.+..-+.....-+.|.. .....|++++|.+.
T Consensus 433 ~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ 512 (840)
T KOG2003|consen 433 GDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEF 512 (840)
T ss_pred cCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHH
Confidence 999999998887765421111111111100 01236789999999
Q ss_pred HHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 036577 235 FEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEM 314 (470)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 314 (470)
|++....+ ..-+.....+.-.+-..|+.++|++.|-++..- +..+..+...+...|....+..+|++++.+.
T Consensus 513 ykeal~nd-------asc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 513 YKEALNND-------ASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHcCc-------hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 99998765 233344444555677899999999999877653 2347778888899999999999999999776
Q ss_pred HHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH
Q 036577 315 MDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVF 394 (470)
Q Consensus 315 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 394 (470)
... ++.|+..+..+...|-+.|+-.+|.+.+-+-.+. ++-+..+...|...|....-+++++.+|++..- +.|+..
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~ 660 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQS 660 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHH
Confidence 544 4778899999999999999999999988776655 345788888899999999999999999998754 479999
Q ss_pred HHHHHHHHH-HHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 036577 395 SYSILINGY-CKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQ 443 (470)
Q Consensus 395 ~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 443 (470)
-|..++..| .+.|++++|+++++....+ ++-|.....-|++.+...|.
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 999887655 5689999999999998875 56688888888888887774
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=1.5e-13 Score=126.50 Aligned_cols=200 Identities=11% Similarity=0.027 Sum_probs=97.4
Q ss_pred CCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 036577 251 PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIM 330 (470)
Q Consensus 251 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 330 (470)
-.+.+|..+.++|..+++.+.|++.|++..+.+ +-...+|+.+..=+.....+|.|...|+..+... +-+-..|.-+.
T Consensus 419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG 496 (638)
T KOG1126|consen 419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLG 496 (638)
T ss_pred CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhh
Confidence 344555555555555555555555555555432 1134455555444555555555555555544321 11122233344
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChh
Q 036577 331 DELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIE 410 (470)
Q Consensus 331 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 410 (470)
..|.+.++++.|+-.|+.+.+.++. +.+....+...+-+.|+.++|++++++....+ +.|+..--..+..+...++++
T Consensus 497 ~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~ 574 (638)
T KOG1126|consen 497 TVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYV 574 (638)
T ss_pred hheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchH
Confidence 4555555555555555555555443 44444555555555555555555555554443 123333333444444555555
Q ss_pred HHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 411 GALSLYSEMLSKGIKP-DVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 411 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
+|+..++++.+. .| +...+..+...|.+.|+.+.|+.-|--+.+
T Consensus 575 eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 575 EALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 555555555542 22 233444444555555555555555555544
No 45
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.65 E-value=3.7e-12 Score=110.54 Aligned_cols=290 Identities=10% Similarity=0.043 Sum_probs=132.0
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036577 121 KHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALF 200 (470)
Q Consensus 121 ~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 200 (470)
|+|.+|..+..+-.+.+ ......|..-..+.-+.|+.+.+-.++.++.+..-.++..++-+..+.....|+++.|..-+
T Consensus 98 G~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 44444444444433333 11122333333444444444444444444444322333334444444444444444444444
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcc-cCCCHhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 036577 201 TKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVV-CEPNTVTYTTIIDGLCKEGFVDKAKELFLKM 279 (470)
Q Consensus 201 ~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 279 (470)
+++.+.+ +.+.........+|.+.|++.+...++..+.+.+--.... ..-...+|..+++-....+..+.-...++..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 4444332 2233344444444444444444444444444333210000 0112234444444444444444444444444
Q ss_pred HhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHh
Q 036577 280 KDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAF 359 (470)
Q Consensus 280 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 359 (470)
..+ .+-++..-..++.-+.++|+.++|.++..+..+++..|... ..-.+.+-++.+.-.+..+.-.+.... ++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~-~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPE-DPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCC-Chh
Confidence 332 22234444455555556666666666665555554333311 111233445555555555444443222 345
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 036577 360 VYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEML 420 (470)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 420 (470)
.+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+.+++.+.|+.++|.++.++..
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 5556666666666666666666655443 3556666666666666666666666655544
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=1.4e-13 Score=126.64 Aligned_cols=290 Identities=14% Similarity=0.077 Sum_probs=230.4
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036577 122 HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSC--FTPDAVTFNSLIKGLCAESRIMEAAAL 199 (470)
Q Consensus 122 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~ 199 (470)
+.++|+.+|+++... +.....+...+..+|...+++++|.++|+.+.+.. ...+..+|.+.+-.+-+ +-++.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 677899999995443 45566778889999999999999999999998752 12367778777765533 222223
Q ss_pred H-HHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHH
Q 036577 200 F-TKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLK 278 (470)
Q Consensus 200 ~-~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 278 (470)
+ +.+.+. -+-.+.+|.++..+|.-+++.+.|++.|++..+.+ +....+|+.+..-+....++|.|...|+.
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-------p~faYayTLlGhE~~~~ee~d~a~~~fr~ 480 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-------PRFAYAYTLLGHESIATEEFDKAMKSFRK 480 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-------CccchhhhhcCChhhhhHHHHhHHHHHHh
Confidence 2 223332 23468899999999999999999999999999876 45889999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 036577 279 MKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNA 358 (470)
Q Consensus 279 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 358 (470)
.+.... -+-..|..+...|.+.++++.|+-.|+++.+.+ +.+.+....+...+.+.|+.++|+++++++...+.+ |+
T Consensus 481 Al~~~~-rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~ 557 (638)
T KOG1126|consen 481 ALGVDP-RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NP 557 (638)
T ss_pred hhcCCc-hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cc
Confidence 887521 133445556778999999999999999999886 667788888899999999999999999999988766 44
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 036577 359 FVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDV 428 (470)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 428 (470)
-.--.-+..+...++.++|...++++.+. ++.+...|..+...|-+.|+.+.|+.-|.-+.+.+.+++.
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 44334556677789999999999999885 2447778889999999999999999999999876555443
No 47
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.63 E-value=4.4e-12 Score=106.85 Aligned_cols=287 Identities=12% Similarity=0.099 Sum_probs=227.4
Q ss_pred cCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc------hHHHHHHHHHhcCCh
Q 036577 155 MGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVI------TYSTLINGLCRTGHT 228 (470)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~------~~~~l~~~~~~~g~~ 228 (470)
.++.++|.+.|-+|.+.. +.+..+--+|.+.|-+.|.++.|+++.+.+.+. ||.. +...|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 468899999999999853 445666778999999999999999999999875 5533 345567778899999
Q ss_pred HHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccCCH
Q 036577 229 IVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV----VTYNSLIHGFCYANDW 304 (470)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~ 304 (470)
+.|+.+|..+.+.+ .--......|+..|-...+|++|+++-+++...+-.+.. .-|.-+...+....+.
T Consensus 124 DRAE~~f~~L~de~-------efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~ 196 (389)
T COG2956 124 DRAEDIFNQLVDEG-------EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDV 196 (389)
T ss_pred hHHHHHHHHHhcch-------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH
Confidence 99999999998765 344567888999999999999999999988887544332 3456666777778899
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHH
Q 036577 305 NEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSM 384 (470)
Q Consensus 305 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 384 (470)
+.|..++.+..+.+ +..+..-..+.......|+++.|.+.++.+.+.++.--..+...|..+|.+.|+.++....+.++
T Consensus 197 d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~ 275 (389)
T COG2956 197 DRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA 275 (389)
T ss_pred HHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999998874 34444555667789999999999999999999977666788899999999999999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh---cCCHHHHHHHHHHHHHc
Q 036577 385 ESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFE---IHQVERAFKLFDEMRRD 457 (470)
Q Consensus 385 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~ 457 (470)
.+.. ++...-..+.+.-....-.+.|...+.+-+.+ +|+...+..|+..-.. .|..++-...++.|...
T Consensus 276 ~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 276 METN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 8864 34444455555555566677777777666654 7999999999877654 35577777888888744
No 48
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.63 E-value=8.4e-12 Score=108.40 Aligned_cols=293 Identities=12% Similarity=0.027 Sum_probs=234.8
Q ss_pred hcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHH
Q 036577 154 KMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALN 233 (470)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~ 233 (470)
..|++.+|.+...+-.+.+ +.....|..-+++.-..|+.+.+-.++.+.-+.--.++....-+........|+...|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 4689999999999987776 334455666677788899999999999999875334455666677788889999999999
Q ss_pred HHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHccCCHHH
Q 036577 234 LFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV-------VTYNSLIHGFCYANDWNE 306 (470)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~ 306 (470)
-++++.+.. +-++.......++|.+.|++.....++..+.+.+.-.+. .+|..+++-....+..+.
T Consensus 175 ~v~~ll~~~-------pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g 247 (400)
T COG3071 175 NVDQLLEMT-------PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG 247 (400)
T ss_pred HHHHHHHhC-------cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence 999998876 678889999999999999999999999999998765554 456777776666666666
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 036577 307 AKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMES 386 (470)
Q Consensus 307 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 386 (470)
-...|+..... ...++..-.+++.-+.+.|+.++|.++..+..+.+..|+ ... .-.+.+-++.+.-++..+.-.+
T Consensus 248 L~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~ 322 (400)
T COG3071 248 LKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLK 322 (400)
T ss_pred HHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHH
Confidence 66666665443 245667777888899999999999999999999877665 222 2345677888887777776665
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 036577 387 NRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAAD 462 (470)
Q Consensus 387 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 462 (470)
.. +.++..+.+|...|.+.+.|.+|.+.|+..++. .|+..+|+.+.+++.+.|+..+|.+..++....-..|+
T Consensus 323 ~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 323 QH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred hC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 43 446688999999999999999999999988854 89999999999999999999999999998875444444
No 49
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.61 E-value=1.3e-10 Score=107.00 Aligned_cols=357 Identities=12% Similarity=0.034 Sum_probs=279.1
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH----HHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 036577 84 TITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKR----LNSTGLFPDLYTYNILINCFCKMGRVS 159 (470)
Q Consensus 84 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----m~~~~~~~~~~~~~~li~~~~~~g~~~ 159 (470)
...++.|.++++.+.+.-|. +..+|-+-...--.+|+.+....+..+ +...|+.-+...|..=...|-..|..-
T Consensus 419 LetYenAkkvLNkaRe~ipt--d~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~ 496 (913)
T KOG0495|consen 419 LETYENAKKVLNKAREIIPT--DREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVI 496 (913)
T ss_pred HHHHHHHHHHHHHHHhhCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChh
Confidence 34567777777777776665 677777766666777877777777665 344577777777777777777778887
Q ss_pred hHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 036577 160 PGFVVLGRILRSCFTP--DAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEE 237 (470)
Q Consensus 160 ~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 237 (470)
.+..+....+..|+.. -..+|+.-...|.+.+.++-|..+|...... .+.+...|......--..|..++...++++
T Consensus 497 TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqk 575 (913)
T KOG0495|consen 497 TCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQK 575 (913)
T ss_pred hHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 7777777777766543 2457777788888888888888888887764 344566777777666677888888889998
Q ss_pred HHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 036577 238 MANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ 317 (470)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (470)
+...- +.....|......+-..|+...|..++..+.+... .+...|-.-+..-..+..++.|..+|.+....
T Consensus 576 av~~~-------pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 576 AVEQC-------PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHhC-------CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 88764 55667777778888889999999999999888743 37788888888889999999999999888775
Q ss_pred CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 036577 318 GVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYS 397 (470)
Q Consensus 318 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 397 (470)
.|+...|.--+...--.++.++|.+++++.++. ++.-...|..+.+.+-..++.+.|...|..-.+. ++-.+..|-
T Consensus 648 --sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWl 723 (913)
T KOG0495|consen 648 --SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWL 723 (913)
T ss_pred --CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHH
Confidence 667777777777777788999999999998886 2223567888889999999999999888765544 355677888
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 398 ILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 398 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
.+...--+.|.+-.|..++++.+-++.+ +...|-..|..-.+.|+.+.|..+.-+..+
T Consensus 724 lLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 724 LLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888899999999999999877654 778899999999999999999888877764
No 50
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=4.3e-11 Score=105.74 Aligned_cols=329 Identities=11% Similarity=0.046 Sum_probs=237.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC-H-HHHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD-A-VTFNSL 183 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~-~~~~~l 183 (470)
|...+-.....+.+.|....|++.|......- +-.-..|..|...+. + .+........ .+.| . ..--.+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~lit---~----~e~~~~l~~~-l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELIT---D----IEILSILVVG-LPSDMHWMKKFFL 233 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhhc---h----HHHHHHHHhc-CcccchHHHHHHH
Confidence 44344444445566777788888887766542 333334444433321 1 1222222222 2222 1 111224
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHH
Q 036577 184 IKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGL 263 (470)
Q Consensus 184 ~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 263 (470)
..++....+.+++.+=.+.+...|.+-+...-+....+.....|+++|+.+|+++..+++= --.|..+|+.++..-
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPY----Rl~dmdlySN~LYv~ 309 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPY----RLDDMDLYSNVLYVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC----cchhHHHHhHHHHHH
Confidence 4566666788888888888888887665555555566677788999999999999887531 123667777776544
Q ss_pred HhCCCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHH
Q 036577 264 CKEGFVD-KAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 342 (470)
Q Consensus 264 ~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 342 (470)
....... -|..+++ + ... -+.|...+.+.|.-.++.++|...|+...+.+ +.....|+.+..-|....+...|
T Consensus 310 ~~~skLs~LA~~v~~-i--dKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AA 383 (559)
T KOG1155|consen 310 NDKSKLSYLAQNVSN-I--DKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAA 383 (559)
T ss_pred hhhHHHHHHHHHHHH-h--ccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHH
Confidence 3322221 1222221 1 122 34577778888999999999999999999886 55667889899999999999999
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 343 SRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
++-++.+++.++. |-..|-.|+++|.-.+...-|.-+|++..... +.|...|.+|..+|.+.++.++|++.|+.....
T Consensus 384 i~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 384 IESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 9999999998765 89999999999999999999999999998863 449999999999999999999999999999986
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 423 GIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 423 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
|-. +...+..|...+-+.++..+|.++|++-++
T Consensus 462 ~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 462 GDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred ccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 533 667899999999999999999999988875
No 51
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.4e-11 Score=110.01 Aligned_cols=375 Identities=12% Similarity=0.031 Sum_probs=219.7
Q ss_pred cCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 036577 76 SSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNST-GLFPDLYTYNILINCFCK 154 (470)
Q Consensus 76 ~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~ 154 (470)
-.|..+....+.++|..-|...+..+.. .-..+..++....-. .++-+.+++.+.-. -...+......+.....-
T Consensus 146 lRgk~y~al~n~~~ar~~Y~~Al~~D~~--c~Ea~~~lvs~~mlt--~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~ 221 (611)
T KOG1173|consen 146 LRGKVYVALDNREEARDKYKEALLADAK--CFEAFEKLVSAHMLT--AQEEFELLESLDLAMLTKEDVERLEILYELKLC 221 (611)
T ss_pred eeeehhhhhccHHHHHHHHHHHHhcchh--hHHHHHHHHHHHhcc--hhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhh
Confidence 3445566667788888888888775443 344444444333211 11223333221000 011222222222222111
Q ss_pred cCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 036577 155 MGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNL 234 (470)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~ 234 (470)
...-+.....-++..-.+...+........+-+...+++.+..++.+.+.+. .++....+..-|.++...|+..+-..+
T Consensus 222 k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~l 300 (611)
T KOG1173|consen 222 KNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLL 300 (611)
T ss_pred hhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHH
Confidence 1110111111110111122345555555666666777788888877777764 355666666666777777777777777
Q ss_pred HHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 036577 235 FEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEM 314 (470)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 314 (470)
=.++.... |..+.+|-++.-.|...|+.++|++.|.+....+. .-...|-.+...|.-.|..++|+..+...
T Consensus 301 sh~LV~~y-------P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tA 372 (611)
T KOG1173|consen 301 SHKLVDLY-------PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTA 372 (611)
T ss_pred HHHHHHhC-------CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHH
Confidence 77776665 55667777777777777888888888777655421 12345667777777777777777777666
Q ss_pred HHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHC----C--
Q 036577 315 MDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESN----R-- 388 (470)
Q Consensus 315 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-- 388 (470)
-+.- +-...-+--+..-|.+.++.+.|.++|.+.....+. |+..++-+.-.....+.+.+|..+|+..... +
T Consensus 373 arl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e 450 (611)
T KOG1173|consen 373 ARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE 450 (611)
T ss_pred HHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc
Confidence 5431 111111222344566777777888888777766433 6677777777666777777777777665521 0
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhhhc
Q 036577 389 CMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTWTYRT 468 (470)
Q Consensus 389 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 468 (470)
......+++.|.++|.+.+++++|+..+++.+....+ +..++.++.-.|...|+++.|.+.|.+..- +.||..+-+.
T Consensus 451 ~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~ 527 (611)
T KOG1173|consen 451 KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISE 527 (611)
T ss_pred ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHH
Confidence 0113445677777778888888888888777765333 666777777777777888888887777765 6676655443
No 52
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=3e-10 Score=100.78 Aligned_cols=185 Identities=15% Similarity=0.209 Sum_probs=145.1
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHH
Q 036577 265 KEGFVDKAKELFLKMKDENINPNVVTYNSLIHGF----CYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMD 340 (470)
Q Consensus 265 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 340 (470)
...+.+.+.++|+...+. ++....||.-+--+| .++.+...|.+++...+. ..|...+|...|..-.+.++++
T Consensus 378 e~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efD 454 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFD 454 (677)
T ss_pred HhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHH
Confidence 467899999999999884 555666666554444 467899999999988764 4888899999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 036577 341 EASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNR-CMHDVFSYSILINGYCKNKEIEGALSLYSEM 419 (470)
Q Consensus 341 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (470)
.+..++++.++-++. +..+|......-...|+.+.|..+|...++.. .......|-+.|+.-...|.++.|..+++++
T Consensus 455 RcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerl 533 (677)
T KOG1915|consen 455 RCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERL 533 (677)
T ss_pred HHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHH
Confidence 999999999998765 88899988888889999999999999988753 2224566777787778899999999999999
Q ss_pred HHCCCCCCHhHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHH
Q 036577 420 LSKGIKPDVVIYNTLFIGLF-----EIH-----------QVERAFKLFDEMR 455 (470)
Q Consensus 420 ~~~~~~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~m~ 455 (470)
++. .+-...|.+...--. ..| ....|.++|++..
T Consensus 534 L~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 534 LDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred HHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 976 333446655543322 334 5667888888775
No 53
>PRK12370 invasion protein regulator; Provisional
Probab=99.56 E-value=4.6e-12 Score=123.45 Aligned_cols=251 Identities=13% Similarity=0.065 Sum_probs=157.2
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---------CCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 036577 121 KHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM---------GRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAES 191 (470)
Q Consensus 121 ~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 191 (470)
+++++|+++|++..+.. +.+...|..+..++... +++++|...+++.++.. +.+..++..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 45677888888877764 33455565555544322 33677888888877764 446677777777777888
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHH
Q 036577 192 RIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDK 271 (470)
Q Consensus 192 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 271 (470)
++++|...|++..+.+ +.+...+..+...+...|++++|+..+++..+.+ +.+...+..++..+...|++++
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-------P~~~~~~~~~~~~~~~~g~~ee 424 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-------PTRAAAGITKLWITYYHTGIDD 424 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CCChhhHHHHHHHHHhccCHHH
Confidence 8888888888877754 3345567777777888888888888888887765 2233333344445666778888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036577 272 AKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQ 351 (470)
Q Consensus 272 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 351 (470)
|...++++.....+-+...+..+..++...|++++|...+.++.... +.+....+.+...|...| +.|...++.+.+
T Consensus 425 A~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 425 AIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 88888777654322244556667777778888888888887765542 223334455555666666 366666666554
Q ss_pred cC-CCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 036577 352 IG-VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESN 387 (470)
Q Consensus 352 ~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (470)
.. ..+....+ +...+.-.|+-+.+... +++.+.
T Consensus 502 ~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 502 SEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 31 11221222 33334445666665544 666654
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.52 E-value=2.5e-11 Score=118.33 Aligned_cols=268 Identities=12% Similarity=0.044 Sum_probs=193.1
Q ss_pred CCCHHHHHHHHHHHHh-----cCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 036577 139 FPDLYTYNILINCFCK-----MGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCA---------ESRIMEAAALFTKLK 204 (470)
Q Consensus 139 ~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~ 204 (470)
..+...|...+.+... .++.++|.+.|++.++.. +.+...|..+..+|.. .+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4455555555554322 134678999999999863 3356667666665542 345899999999999
Q ss_pred hcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 036577 205 AFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENI 284 (470)
Q Consensus 205 ~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 284 (470)
+.. +.+...+..+...+...|++++|...|+++.+.+ +.+...+..+..++...|++++|...+++..+...
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-------P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P 403 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-------PISADIKYYYGWNLFMAGQLEEALQTINECLKLDP 403 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 864 3467778888888999999999999999999876 56778889999999999999999999999988743
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHH
Q 036577 285 NPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTL 364 (470)
Q Consensus 285 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 364 (470)
. +...+..++..+...|++++|...+++..+...+.+...+..+..++...|+.++|...+.++...... +....+.+
T Consensus 404 ~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l 481 (553)
T PRK12370 404 T-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLL 481 (553)
T ss_pred C-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHH
Confidence 2 233334445556778999999999999887642334556777888899999999999999998765322 34455666
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 365 MDGFCLTGRVNRAKELFVSMESNR-CMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
...|...| ++|...++.+.+.. ..+....+ +-..|.-.|+.+.+..+ +++.+.
T Consensus 482 ~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 482 YAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 66777777 47877777765531 11221222 44456667887777777 888765
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.50 E-value=2.5e-11 Score=105.38 Aligned_cols=200 Identities=10% Similarity=0.000 Sum_probs=123.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIK 185 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (470)
....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 35566677777777777777777777776653 4445666667777777777777777777776653 334556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHH
Q 036577 186 GLCAESRIMEAAALFTKLKAFGC-EPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLC 264 (470)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 264 (470)
.+...|++++|.+.+++...... +.....+..+...+...|++++|.+.+++..... +.+...+..+...+.
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~ 180 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-------PQRPESLLELAELYY 180 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cCChHHHHHHHHHHH
Confidence 77777777777777777665321 1123345555566666666666666666666543 334455556666666
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036577 265 KEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMM 315 (470)
Q Consensus 265 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 315 (470)
..|++++|...+++.... .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 181 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 181 LRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 666666666666665554 22344444455555556666666666555544
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.49 E-value=6.1e-11 Score=102.95 Aligned_cols=202 Identities=13% Similarity=0.053 Sum_probs=170.8
Q ss_pred CCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 036577 251 PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIM 330 (470)
Q Consensus 251 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 330 (470)
.....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 346678888999999999999999999988763 3457788889999999999999999999998875 45667788889
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCC-CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q 036577 331 DELCKNGKMDEASRLLDLMIQIGVR-PNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEI 409 (470)
Q Consensus 331 ~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 409 (470)
..+...|++++|...++.+.+.... .....+..+...+...|++++|...+++..... +.+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCH
Confidence 9999999999999999999875322 234567778889999999999999999998764 34677888999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 410 EGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 410 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.+
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999876 344566777788888899999999999888765
No 57
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=6.4e-12 Score=106.01 Aligned_cols=233 Identities=12% Similarity=0.007 Sum_probs=200.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 036577 216 STLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLI 295 (470)
Q Consensus 216 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 295 (470)
+-+..+|.+.|.+.+|.+-++...... |-+.||..|-.+|.+..+.+.|+.++.+-.+. .+.++.....+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~--------~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~A 297 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--------PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQA 297 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC--------CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhH
Confidence 567899999999999999999988754 66778999999999999999999999998876 344555556677
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHH
Q 036577 296 HGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVN 375 (470)
Q Consensus 296 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 375 (470)
+.+...++.++|.++++...+.. +.++.....+...|.-.++++.|+..++++.+.|+. ++..|+.+.-+|.-.+++|
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 88889999999999999998875 667778888888999999999999999999999988 8999999999999999999
Q ss_pred HHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 036577 376 RAKELFVSMESNRCMH--DVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDE 453 (470)
Q Consensus 376 ~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 453 (470)
-+..-|++....--.| -...|-.+.......|++.-|.+.|+-.+..+.. ....++.|...-.+.|+.++|..+++.
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 9999999987754333 4567888888889999999999999998876433 567899999888999999999999999
Q ss_pred HHHcCCCCC
Q 036577 454 MRRDGVAAD 462 (470)
Q Consensus 454 m~~~g~~p~ 462 (470)
... +.|+
T Consensus 455 A~s--~~P~ 461 (478)
T KOG1129|consen 455 AKS--VMPD 461 (478)
T ss_pred hhh--hCcc
Confidence 887 4554
No 58
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.47 E-value=5.1e-10 Score=105.64 Aligned_cols=290 Identities=14% Similarity=0.113 Sum_probs=164.4
Q ss_pred HHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHH-HHHHHHh-----
Q 036577 151 CFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYST-LINGLCR----- 224 (470)
Q Consensus 151 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~-l~~~~~~----- 224 (470)
.+...|++++|++.++.-.+. +.............+.+.|+.++|..+|..+.+.+ |+...|.. +..+..-
T Consensus 13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 344555555555555443322 22233444455555555566666666666555543 33333322 2222211
Q ss_pred cCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 036577 225 TGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFV-DKAKELFLKMKDENINPNVVTYNSLIHGFCYAND 303 (470)
Q Consensus 225 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 303 (470)
..+.+...++|+++.... |.......+.-.+.....+ ..+...+..+..+|++ .+|+.+-..|.....
T Consensus 90 ~~~~~~~~~~y~~l~~~y--------p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--------PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEK 158 (517)
T ss_pred cccHHHHHHHHHHHHHhC--------ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhH
Confidence 123455566666655443 1111111111111111112 2334444555556643 245555555554444
Q ss_pred HHHHHHHHHHHHHC--------------CCCCCH--hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 036577 304 WNEAKCLLIEMMDQ--------------GVQPNV--VTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDG 367 (470)
Q Consensus 304 ~~~a~~~~~~~~~~--------------~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 367 (470)
.+-...++...... .-+|.. .++..+...|...|++++|+..++..+++.+. .+..|..-.+.
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~Kari 237 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHH
Confidence 44444444444321 113333 34456677788888888888888888887433 36778888888
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHh------HHH--HHHHHHH
Q 036577 368 FCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVV------IYN--TLFIGLF 439 (470)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~--~l~~~~~ 439 (470)
+-+.|++.+|.+.++.....+ .-|...-+-.+..+.++|++++|.+++......+..|-.. .|. ....+|.
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887765 3477777777888888888888888888887665433221 232 2357788
Q ss_pred hcCCHHHHHHHHHHHHH
Q 036577 440 EIHQVERAFKLFDEMRR 456 (470)
Q Consensus 440 ~~g~~~~A~~~~~~m~~ 456 (470)
+.|++..|++.|..+.+
T Consensus 317 r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 317 RQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 88888888888777754
No 59
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.7e-10 Score=104.55 Aligned_cols=287 Identities=11% Similarity=0.042 Sum_probs=228.7
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHH
Q 036577 139 FPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTL 218 (470)
Q Consensus 139 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 218 (470)
..+........+-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-.-+=.++.+. .|-.+.+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 4566677777788888999999999999998864 566667777777888999988888887888775 45678899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036577 219 INGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGF 298 (470)
Q Consensus 219 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 298 (470)
.--|...|+..+|.+.|.+....+ +.-...|-.+...|+-.|..++|+..+...-+. ++-...-+--+.--|
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-------~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey 390 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-------PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEY 390 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-------ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHH
Confidence 999999999999999999998876 444568899999999999999999998877654 111111222344457
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-C-CCHhHHHHHHHHHHcCC
Q 036577 299 CYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQI----GV-R-PNAFVYNTLMDGFCLTG 372 (470)
Q Consensus 299 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~-~~~~~~~~l~~~~~~~g 372 (470)
.+.+..+-|.+.|.+..... |.|+..++-+.-.....+.+.+|..+|+..+.. +. . -...+++.|+.+|.+.+
T Consensus 391 ~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~ 469 (611)
T KOG1173|consen 391 MRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN 469 (611)
T ss_pred HHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh
Confidence 78899999999999888765 667888888888778888999999999887632 11 1 13456889999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 036577 373 RVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLF 439 (470)
Q Consensus 373 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 439 (470)
.+++|+..++..+... +.+..++.++.-.|...|+++.|++.|.+.+ .+.|+..+...++..+.
T Consensus 470 ~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAI 533 (611)
T ss_pred hHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHH
Confidence 9999999999988864 5589999999999999999999999999998 66888876666665443
No 60
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=2e-11 Score=103.09 Aligned_cols=229 Identities=16% Similarity=0.025 Sum_probs=125.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHH
Q 036577 181 NSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTII 260 (470)
Q Consensus 181 ~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 260 (470)
+.+.++|.+.|.+.+|.+.++.-.+. .|-+.||..|..+|.+..+.+.|+.++.+-.+.. +-++.......
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-------P~~VT~l~g~A 297 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-------PFDVTYLLGQA 297 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-------CchhhhhhhhH
Confidence 44555566666666666555555443 3455555555556666666666666655554432 33333334445
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHH
Q 036577 261 DGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMD 340 (470)
Q Consensus 261 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 340 (470)
+.+...++.++|.++|+...+.. +.++.....+...|.-.++++-|+..++++.+.|+ -++..|+.+.-+|.-.++++
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchh
Confidence 55555556666666665555442 22444444455555555666666666666666552 34555555555666666666
Q ss_pred HHHHHHHHHHHcCCCCC--HhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 036577 341 EASRLLDLMIQIGVRPN--AFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSE 418 (470)
Q Consensus 341 ~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 418 (470)
-++.-|.+....--.|+ ..+|-.+.......||+..|.+.|+.....+ ..+...++.|.-.-.+.|++++|..++..
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 66666655554422222 2345555555556666666666666555543 33555566666666666666666666665
Q ss_pred HHH
Q 036577 419 MLS 421 (470)
Q Consensus 419 ~~~ 421 (470)
...
T Consensus 455 A~s 457 (478)
T KOG1129|consen 455 AKS 457 (478)
T ss_pred hhh
Confidence 553
No 61
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.45 E-value=1.2e-10 Score=108.50 Aligned_cols=245 Identities=18% Similarity=0.132 Sum_probs=181.7
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhH-HHHHHHHHhCCCHHHHHHHHHHHHhC-----C-
Q 036577 211 NVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTY-TTIIDGLCKEGFVDKAKELFLKMKDE-----N- 283 (470)
Q Consensus 211 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~-----~- 283 (470)
-..+...+...|...|++++|..+++...+.-........|...+. +.+...|...+++++|..+|+++... |
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3456667888999999999999999988776100000023444443 44778899999999999999998652 2
Q ss_pred -CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-----CC-CCCH-hHHHHHHHHHHHcCCHHHHHHHHHHHHHc---
Q 036577 284 -INPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ-----GV-QPNV-VTFNVIMDELCKNGKMDEASRLLDLMIQI--- 352 (470)
Q Consensus 284 -~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 352 (470)
.+.-..+++.|..+|.+.|++++|...++...+. +. .|.+ ..++.+...+...+++++|..++....+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 1223456788888999999999999888876542 11 2222 34667778899999999999999876553
Q ss_pred CCCC----CHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 036577 353 GVRP----NAFVYNTLMDGFCLTGRVNRAKELFVSMESNR-------CMHDVFSYSILINGYCKNKEIEGALSLYSEMLS 421 (470)
Q Consensus 353 ~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (470)
-+.+ -..+++.|...|.+.|++++|+++++.++... ..-....++.+...|.+.+++++|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 1112 24679999999999999999999999886531 112356678899999999999999999987653
Q ss_pred ----CCC-CCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036577 422 ----KGI-KPD-VVIYNTLFIGLFEIHQVERAFKLFDEMR 455 (470)
Q Consensus 422 ----~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (470)
.|. .|+ ..+|..|...|...|++++|.++.+.+.
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 222 233 3588999999999999999999998886
No 62
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=1.8e-09 Score=96.33 Aligned_cols=338 Identities=14% Similarity=0.108 Sum_probs=228.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC-HHHHHHHHH
Q 036577 108 SSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPD-LYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD-AVTFNSLIK 185 (470)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~ 185 (470)
..+.....-|.++|++++|++.|...+.. .|+ +..|.....+|...|++++..+.-...++. .|+ +..+..-..
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRAS 191 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHH
Confidence 34666778888999999999999999986 677 778888999999999999988887777765 333 344555555
Q ss_pred HHHhcCCHHHHH----------------------HHHHH---------HHhcC--CCCCcchHHHHHHHHHh--------
Q 036577 186 GLCAESRIMEAA----------------------ALFTK---------LKAFG--CEPNVITYSTLINGLCR-------- 224 (470)
Q Consensus 186 ~~~~~g~~~~a~----------------------~~~~~---------~~~~g--~~~~~~~~~~l~~~~~~-------- 224 (470)
++-..|++++|+ +++++ +.+.+ +-|+.....+....+..
T Consensus 192 A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~ 271 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDN 271 (606)
T ss_pred HHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccC
Confidence 555566655543 22222 11111 11222222222222210
Q ss_pred -----------------cC---ChHHHHHHHHHHHhcCCCCCcccCCC---------HhhHHHHHHHHHhCCCHHHHHHH
Q 036577 225 -----------------TG---HTIVALNLFEEMANGNGEIGVVCEPN---------TVTYTTIIDGLCKEGFVDKAKEL 275 (470)
Q Consensus 225 -----------------~g---~~~~a~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~g~~~~a~~~ 275 (470)
.+ .+.+|.+.+.+-...... ....+ ..+.......+.-.|+.-.|..-
T Consensus 272 ~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~---~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d 348 (606)
T KOG0547|consen 272 KSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSES---SLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQED 348 (606)
T ss_pred CCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhh---hccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhh
Confidence 11 122222222221111100 00111 12222222334457888999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 036577 276 FLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVR 355 (470)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 355 (470)
|+........++ ..|--+..+|...++.++....|++..+.+ +-++.+|..-...+.-.+++++|..=|++.+..++.
T Consensus 349 ~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe 426 (606)
T KOG0547|consen 349 FDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE 426 (606)
T ss_pred HHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh
Confidence 999988744332 337777888999999999999999998876 667778888888888899999999999999988654
Q ss_pred CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-------H
Q 036577 356 PNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD-------V 428 (470)
Q Consensus 356 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~ 428 (470)
+...|.-+..+..+.+.+++++..|++.+.+ ++.-+..|+.....+...++++.|.+.|+..++. .|+ .
T Consensus 427 -~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~ 502 (606)
T KOG0547|consen 427 -NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNA 502 (606)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccc
Confidence 6777888888888999999999999999876 3557889999999999999999999999998864 332 2
Q ss_pred h--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 036577 429 V--IYNTLFIGLFEIHQVERAFKLFDEMRRDGVAA 461 (470)
Q Consensus 429 ~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 461 (470)
. +-..++..- -.+++..|.+++++..+ +.|
T Consensus 503 ~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dp 534 (606)
T KOG0547|consen 503 APLVHKALLVLQ-WKEDINQAENLLRKAIE--LDP 534 (606)
T ss_pred hhhhhhhHhhhc-hhhhHHHHHHHHHHHHc--cCc
Confidence 1 222222222 34899999999999987 444
No 63
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=2.9e-09 Score=91.31 Aligned_cols=266 Identities=15% Similarity=0.127 Sum_probs=148.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHH-HHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHH
Q 036577 183 LIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLI-NGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIID 261 (470)
Q Consensus 183 l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 261 (470)
|.......-.+++|+++|++....+ |+-...|..+ -+|.+..-++-+.++++-..++- +.++...|..+.
T Consensus 157 LAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-------pdStiA~NLkac 227 (557)
T KOG3785|consen 157 LASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-------PDSTIAKNLKAC 227 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-------CCcHHHHHHHHH
Confidence 3444444456788899998887643 5555555544 45667777788888888877764 445555555444
Q ss_pred HHHhCCCHHHHHHHHHH--------------HHhCCC------------CC-----CHHHHHHHHHHHHccCCHHHHHHH
Q 036577 262 GLCKEGFVDKAKELFLK--------------MKDENI------------NP-----NVVTYNSLIHGFCYANDWNEAKCL 310 (470)
Q Consensus 262 ~~~~~g~~~~a~~~~~~--------------~~~~~~------------~~-----~~~~~~~li~~~~~~~~~~~a~~~ 310 (470)
...+.=.-..|..-... +.++++ -| -+.....|+-.|.+.++..+|..+
T Consensus 228 n~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L 307 (557)
T KOG3785|consen 228 NLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISL 307 (557)
T ss_pred HHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHH
Confidence 33332111111111111 111100 00 112223345567788888888888
Q ss_pred HHHHHHCCCCCCHhHHHHHH-----------------------------------------HHHHHcCCHHHHHHHHHHH
Q 036577 311 LIEMMDQGVQPNVVTFNVIM-----------------------------------------DELCKNGKMDEASRLLDLM 349 (470)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~l~-----------------------------------------~~~~~~g~~~~a~~~~~~~ 349 (470)
..++.-. .|-....-.++ .++.-..++++.+..+..+
T Consensus 308 ~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi 385 (557)
T KOG3785|consen 308 CKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSI 385 (557)
T ss_pred HhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7665311 12111111111 1111122233333333333
Q ss_pred HHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 036577 350 IQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSY-SILINGYCKNKEIEGALSLYSEMLSKGIKPDV 428 (470)
Q Consensus 350 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 428 (470)
..--...|...+ .+.++++..|++.+|+++|-++....+. |..+| ..+.++|.+.|+++.|++++-++ +-+.+.
T Consensus 386 ~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~ 460 (557)
T KOG3785|consen 386 ESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSER 460 (557)
T ss_pred HHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhH
Confidence 322222222223 4677888899999999999777654433 44455 56778999999999998887665 333344
Q ss_pred hHHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhh
Q 036577 429 VIYN-TLFIGLFEIHQVERAFKLFDEMRRDGVAADTWTY 466 (470)
Q Consensus 429 ~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 466 (470)
.+.- .+..-|.+.+++=-|.+.|+.+.. +.|+..-|
T Consensus 461 fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 461 FSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcccc
Confidence 4333 344788899999999999998887 45555444
No 64
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.37 E-value=5.6e-09 Score=98.71 Aligned_cols=293 Identities=12% Similarity=0.131 Sum_probs=167.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---
Q 036577 114 FGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAE--- 190 (470)
Q Consensus 114 ~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 190 (470)
...+...|++++|++.++.-... +.............+.+.|+.++|..++..+++.+ +.+..-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccc
Confidence 34455667777777776554332 23334455556666677777777777777777664 33444444444444221
Q ss_pred --CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChH-HHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCC
Q 036577 191 --SRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTI-VALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEG 267 (470)
Q Consensus 191 --g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 267 (470)
.+.+...++|+++...- |.......+.-.+.....+. .+..++..+...| .| .+|+.+-..|....
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kg-------vP--slF~~lk~Ly~d~~ 157 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKG-------VP--SLFSNLKPLYKDPE 157 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcC-------Cc--hHHHHHHHHHcChh
Confidence 24566666666665532 33333322222222211222 3444444555444 12 24555555555444
Q ss_pred CHHHHHHHHHHHHhC--------------CCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 036577 268 FVDKAKELFLKMKDE--------------NINPNVV--TYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMD 331 (470)
Q Consensus 268 ~~~~a~~~~~~~~~~--------------~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 331 (470)
...-..+++...... .-+|+.. ++..+...|-..|++++|++.+++.++.. +..+..|..-..
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Kar 236 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKAR 236 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 444444444443321 0123332 34555667777888888888888877773 333556667777
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH--H----HH--HHHHHHH
Q 036577 332 ELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDV--F----SY--SILINGY 403 (470)
Q Consensus 332 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~----~~--~~l~~~~ 403 (470)
.+-..|++.+|.+.++.....+.. |...-+-.+..+.+.|++++|.+++....+.+..|.. . .| .....+|
T Consensus 237 ilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~ 315 (517)
T PF12569_consen 237 ILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAY 315 (517)
T ss_pred HHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence 788888888888888888777655 6666667777777888888888888777665533311 1 12 3445677
Q ss_pred HHcCChhHHHHHHHHHHH
Q 036577 404 CKNKEIEGALSLYSEMLS 421 (470)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~ 421 (470)
.+.|++..|++.|....+
T Consensus 316 ~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 316 LRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 788888888776665543
No 65
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.37 E-value=1.7e-10 Score=107.56 Aligned_cols=244 Identities=18% Similarity=0.141 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----C-CCCCHH-HHHHHHHHHHhcCCcchHHHHHHHHHhC-----C--
Q 036577 107 VSSFNILFGCLAKNKHYDTVLSLFKRLNST-----G-LFPDLY-TYNILINCFCKMGRVSPGFVVLGRILRS-----C-- 172 (470)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-----~-~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~-- 172 (470)
..+...+...|...|+++.|..+++...+. | ..|... ..+.+...|...+++++|..+|++++.. |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 455666999999999999999999987665 2 123333 3344778899999999999999998762 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC-CCC-cchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 036577 173 FTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAF-----GC-EPN-VITYSTLINGLCRTGHTIVALNLFEEMANGNGEI 245 (470)
Q Consensus 173 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----g~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 245 (470)
.+.-..+++.|...|.+.|++++|...+++..+. |. .+. ...++.+...+...+++++|..+++...+.....
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1223456788888999999999999888876532 11 112 2345677788899999999999998876544211
Q ss_pred -CcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC-----C--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 036577 246 -GVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE-----N--INPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ 317 (470)
Q Consensus 246 -~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (470)
+.....-..+++.|...|.+.|++++|.++++++... | ..-....++.|...|.+.+++.+|..+|.+....
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 1101123457888888899999999999988887642 1 1122345666777777777777777777664331
Q ss_pred ----C--CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036577 318 ----G--VQPNVVTFNVIMDELCKNGKMDEASRLLDLMI 350 (470)
Q Consensus 318 ----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 350 (470)
| .+....+|..|...|.+.|+++.|.++.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2 12224567777777777777777777776665
No 66
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.36 E-value=2e-08 Score=92.90 Aligned_cols=362 Identities=14% Similarity=0.124 Sum_probs=246.2
Q ss_pred ccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 036577 75 KSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK 154 (470)
Q Consensus 75 ~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 154 (470)
.-.|......|+-++|....+..++.++. +...|..+.-.+...+++++|+..|......+ +.|...+.-+.-.-++
T Consensus 45 AmkGL~L~~lg~~~ea~~~vr~glr~d~~--S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~Q 121 (700)
T KOG1156|consen 45 AMKGLTLNCLGKKEEAYELVRLGLRNDLK--SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQ 121 (700)
T ss_pred HhccchhhcccchHHHHHHHHHHhccCcc--cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Confidence 33455566778999999999998887665 88899999999999999999999999999886 6778888888877888
Q ss_pred cCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCcchHHHHH------HHHHhcCC
Q 036577 155 MGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFG-CEPNVITYSTLI------NGLCRTGH 227 (470)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~~~~l~------~~~~~~g~ 227 (470)
.|+++-........++.. +.....|..+..++.-.|+...|..++++..+.. ..|+...+.... ......|.
T Consensus 122 mRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~ 200 (700)
T KOG1156|consen 122 MRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGS 200 (700)
T ss_pred HHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHccc
Confidence 899888888877777652 3456678888888889999999999999987654 245555554332 33456788
Q ss_pred hHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-ccCCHHH
Q 036577 228 TIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFC-YANDWNE 306 (470)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~ 306 (470)
.++|++.+......- ......-..-...+.+.+++++|..++..+... .||...|...+..+. +-.+..+
T Consensus 201 ~q~ale~L~~~e~~i-------~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~ 271 (700)
T KOG1156|consen 201 LQKALEHLLDNEKQI-------VDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLE 271 (700)
T ss_pred HHHHHHHHHhhhhHH-------HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHH
Confidence 888888777654432 222333345567788899999999999999887 466666555443333 3333333
Q ss_pred HH-HHHHHH----------------------------------HHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036577 307 AK-CLLIEM----------------------------------MDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQ 351 (470)
Q Consensus 307 a~-~~~~~~----------------------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 351 (470)
+. .+|... .+.|+++ ++..+...|-.-. .+. ++++++.
T Consensus 272 ~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~---k~~-~le~Lvt 344 (700)
T KOG1156|consen 272 ALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPE---KVA-FLEKLVT 344 (700)
T ss_pred HHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchh---HhH-HHHHHHH
Confidence 33 333332 2333222 1222222221111 111 3333221
Q ss_pred c------C------------CCCCHhHH--HHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCChh
Q 036577 352 I------G------------VRPNAFVY--NTLMDGFCLTGRVNRAKELFVSMESNRCMH-DVFSYSILINGYCKNKEIE 410 (470)
Q Consensus 352 ~------~------------~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 410 (470)
. | -+|....| -.++..+-+.|+++.|..+.+..+.+ .| -+..|..=.+.+...|+++
T Consensus 345 ~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~ 422 (700)
T KOG1156|consen 345 SYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLD 422 (700)
T ss_pred HHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChH
Confidence 1 1 13454444 45677788999999999999998886 34 3455666678888999999
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 036577 411 GALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGV 459 (470)
Q Consensus 411 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 459 (470)
+|..++++..+.+. +|..+=..-..-..+..+.++|.++.-.+.+.|.
T Consensus 423 eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 423 EAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 99999999986542 2433332445556678899999999988887764
No 67
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.36 E-value=9.5e-11 Score=111.39 Aligned_cols=276 Identities=16% Similarity=0.239 Sum_probs=186.8
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036577 128 SLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFG 207 (470)
Q Consensus 128 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 207 (470)
.++-.+...|+.|+..||..+|.-||..|+.+.|- +|.-|.-...+.+..+++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 35566777788888888888888888888888887 8887777767777888888888888888777665
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC-CCCC
Q 036577 208 CEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE-NINP 286 (470)
Q Consensus 208 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~ 286 (470)
.|...+|..+..+|...||... ++..++ ....+...+...|.-.....++..+... +.-|
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~-fe~veq-----------------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lp 140 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLP 140 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH-HHHHHH-----------------HHHHHHhhhhhhccCcHHHHHHhhcccCcccch
Confidence 4778888888888888888765 222222 1122334455556555555555554322 3334
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 036577 287 NVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGV-QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLM 365 (470)
Q Consensus 287 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 365 (470)
|..+ .+......|-|+.+++++..+..... .|... ++.-+.... .-..++........-.|+..+|..++
T Consensus 141 da~n---~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l 211 (1088)
T KOG4318|consen 141 DAEN---AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVL 211 (1088)
T ss_pred hHHH---HHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHH
Confidence 4432 34444556777777777766533210 11111 233222222 22233333333222257889999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHH
Q 036577 366 DGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVE 445 (470)
Q Consensus 366 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 445 (470)
.+-...|+.+.|..++.+|.+.|.+.+..-|..|+-+ .++...+..+++-|.+.|+.|+..|+...+..+..+|...
T Consensus 212 ~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~ 288 (1088)
T KOG4318|consen 212 KRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTK 288 (1088)
T ss_pred HHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhh
Confidence 9989999999999999999999988887777777655 7888888888999999999999999988888888866533
No 68
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.35 E-value=1.1e-10 Score=110.93 Aligned_cols=273 Identities=13% Similarity=0.113 Sum_probs=199.9
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036577 93 IFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSC 172 (470)
Q Consensus 93 ~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 172 (470)
++-.+...+.. |+..+|.++|.-|+..|+.+.|- +|.-|.-...+-+...|+.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~-PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 12 FLALHEISGIL-PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred HHHHHHHhcCC-CchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 34445555555 88899999999999999999888 9999988887888889999999999999888775
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCC
Q 036577 173 FTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPN 252 (470)
Q Consensus 173 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 252 (470)
.|...+|..|...|...||+.. .+..++ -.-.+...+...|--..-..++..+.-..+ .-||
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~-----~lpd 141 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPH-----SLPD 141 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcc-----cchh
Confidence 6788999999999999999876 222333 122334455666666666666655443322 2444
Q ss_pred HhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 036577 253 TVTYTTIIDGLCKEGFVDKAKELFLKMKDENI-NPNVVTYNSLIHGFCYAN-DWNEAKCLLIEMMDQGVQPNVVTFNVIM 330 (470)
Q Consensus 253 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 330 (470)
.. ..+....-.|-++.+++++..+..... .|..+ +++-+.... .+++-..+.....+ .|+..+|..++
T Consensus 142 a~---n~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l 211 (1088)
T KOG4318|consen 142 AE---NAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVL 211 (1088)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHH
Confidence 43 344445566778888888877654321 12222 244443333 33443333333332 58999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 036577 331 DELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKE 408 (470)
Q Consensus 331 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 408 (470)
.+-...|+.+.|..++.+|.+.|++.+..-|..|+-+ .++...++.+...|.+.|+.|+..|+...+..+...|.
T Consensus 212 ~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 212 KRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 9999999999999999999999999898888887766 88899999999999999999999999988888777555
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.3e-08 Score=89.03 Aligned_cols=306 Identities=12% Similarity=0.025 Sum_probs=217.5
Q ss_pred CCHHHHHHHHHHHHhc--CCcchHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-cchH
Q 036577 140 PDLYTYNILINCFCKM--GRVSPGFVVLGRILR-SCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPN-VITY 215 (470)
Q Consensus 140 ~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~ 215 (470)
|...+....+.+++.. ++...|.+.+--+.. .-++.|+.....+..++...|+.++|+..|++....+ |+ ....
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~M 269 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAM 269 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhH
Confidence 3333444445444443 444444444433332 3356788888999999999999999999999987642 33 2222
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 036577 216 STLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLI 295 (470)
Q Consensus 216 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 295 (470)
....-.+.+.|+.+....+...+.... .-....|..-+......++++.|+.+-++..+.+ +.+...+-.-.
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-------~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG 341 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-------KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKG 341 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-------hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhcc
Confidence 333444567889988888888887654 3344455555556666788899999888887753 22444554445
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHH-HHHHc-CCC
Q 036577 296 HGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLM-DGFCL-TGR 373 (470)
Q Consensus 296 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~ 373 (470)
..+...|++++|.-.|+..+... +-+...|.-++.+|...|++.+|..+-+...+. .+.+..+.+.+. ..+.. ..-
T Consensus 342 ~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~ 419 (564)
T KOG1174|consen 342 RLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRM 419 (564)
T ss_pred HHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchh
Confidence 67788899999999999888764 457789999999999999999999888877665 334666766653 33332 233
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 036577 374 VNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDE 453 (470)
Q Consensus 374 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 453 (470)
-++|.++++.....+ +.-....+.+...+...|..+.++.++++.+.. .||....+.|.+.+...+.+++|.+.|..
T Consensus 420 rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 420 REKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred HHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 578888888877653 224556677888899999999999999998853 78999999999999999999999999988
Q ss_pred HHHcCCCCC
Q 036577 454 MRRDGVAAD 462 (470)
Q Consensus 454 m~~~g~~p~ 462 (470)
..+ +.|.
T Consensus 497 ALr--~dP~ 503 (564)
T KOG1174|consen 497 ALR--QDPK 503 (564)
T ss_pred HHh--cCcc
Confidence 876 5554
No 70
>PF13041 PPR_2: PPR repeat family
Probab=99.33 E-value=4.8e-12 Score=79.37 Aligned_cols=50 Identities=50% Similarity=0.868 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 036577 391 HDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFE 440 (470)
Q Consensus 391 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 440 (470)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777777777777777764
No 71
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.32 E-value=8.3e-08 Score=88.84 Aligned_cols=371 Identities=13% Similarity=0.127 Sum_probs=201.4
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 036577 81 DITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSP 160 (470)
Q Consensus 81 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 160 (470)
...+|++...+..|+.++..-|..-....|...+......+-++.++++|++.++. ++..-...+..++..+++++
T Consensus 112 l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~e 187 (835)
T KOG2047|consen 112 LIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDE 187 (835)
T ss_pred HHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHH
Confidence 34567788888888888877765444567888888888888888888888887764 23345666777777788877
Q ss_pred HHHHHHHHHhCC------CCCCHH--------------------------------------HHHHHHHHHHhcCCHHHH
Q 036577 161 GFVVLGRILRSC------FTPDAV--------------------------------------TFNSLIKGLCAESRIMEA 196 (470)
Q Consensus 161 a~~~~~~~~~~~------~~~~~~--------------------------------------~~~~l~~~~~~~g~~~~a 196 (470)
|.+.+..++... .+.+.. .|++|.+-|.+.|.++.|
T Consensus 188 aa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~eka 267 (835)
T KOG2047|consen 188 AAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKA 267 (835)
T ss_pred HHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHH
Confidence 777776654321 011222 356666666666666666
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH----------------------HHHHHHHHHhcCCCCC-----ccc
Q 036577 197 AALFTKLKAFGCEPNVITYSTLINGLCRTGHTIV----------------------ALNLFEEMANGNGEIG-----VVC 249 (470)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~----------------------a~~~~~~~~~~~~~~~-----~~~ 249 (470)
..+|++.... ..+..-|..+.++|++-....- .+..|+.+.+..+... .+.
T Consensus 268 rDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn 345 (835)
T KOG2047|consen 268 RDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQN 345 (835)
T ss_pred HHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcC
Confidence 6666665542 2344445555555554221111 1111111111110000 000
Q ss_pred CCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-
Q 036577 250 EPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINP------NVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPN- 322 (470)
Q Consensus 250 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~- 322 (470)
+.++..|..-+. ...|+..+....|.++... +.| -...|..+.+.|-..|+.+.|..+|++..+...+.-
T Consensus 346 ~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~ 422 (835)
T KOG2047|consen 346 PHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE 422 (835)
T ss_pred CccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH
Confidence 111111111111 1234555556666655543 112 234577778888888888888888888876543221
Q ss_pred --HhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----------------CCHhHHHHHHHHHHcCCCHHHHHHHHHH
Q 036577 323 --VVTFNVIMDELCKNGKMDEASRLLDLMIQIGVR-----------------PNAFVYNTLMDGFCLTGRVNRAKELFVS 383 (470)
Q Consensus 323 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 383 (470)
..+|..-...-.++.+++.|.++.+.....--. -+...|...++..-..|-++....++++
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr 502 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR 502 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 334555555566777888888887776543111 0223455555555667778888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHHHHh---cCCHHHHHHHHHHHHHcCC
Q 036577 384 MESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVV-IYNTLFIGLFE---IHQVERAFKLFDEMRRDGV 459 (470)
Q Consensus 384 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~ 459 (470)
+++..+. ++.........+-.+.-++++.+++++-+..=..|+.. .|+..+..+.+ .-+.+.|..+|++..+ |.
T Consensus 503 iidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~C 580 (835)
T KOG2047|consen 503 IIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GC 580 (835)
T ss_pred HHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cC
Confidence 7765432 22222222223334444555555555544332223332 55554443332 1245666666666665 44
Q ss_pred CCC
Q 036577 460 AAD 462 (470)
Q Consensus 460 ~p~ 462 (470)
+|+
T Consensus 581 pp~ 583 (835)
T KOG2047|consen 581 PPE 583 (835)
T ss_pred CHH
Confidence 443
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.32 E-value=4.7e-09 Score=93.88 Aligned_cols=218 Identities=11% Similarity=-0.020 Sum_probs=138.8
Q ss_pred ChhHHHHHHHHHHhcCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 036577 86 TPNEAFCIFDYMLNMRPSP--PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFV 163 (470)
Q Consensus 86 ~~~~A~~~f~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 163 (470)
..+.++.-+.+++...+.. .....|..+...+...|++++|...|++..+.. +.+...|+.+...+...|++++|.+
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4456666666676544321 124567777788888888888888888888765 5567788888888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 036577 164 VLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243 (470)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 243 (470)
.|++.++.. +.+..+|..+..++...|++++|.+.|++..+.. |+..........+...++.++|...|++.....
T Consensus 120 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 120 AFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 888888753 3356677778888888888888888888887653 443222222223345677888888886655332
Q ss_pred CCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC---CC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 036577 244 EIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE---NI---NPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ 317 (470)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (470)
.++...+ . ......|+...+ +.++.+.+. .. +.....|..+...+.+.|++++|...|++..+.
T Consensus 196 ------~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 196 ------DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred ------CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2222211 2 222234544433 233333321 10 012346677777777777777777777777766
Q ss_pred C
Q 036577 318 G 318 (470)
Q Consensus 318 ~ 318 (470)
+
T Consensus 266 ~ 266 (296)
T PRK11189 266 N 266 (296)
T ss_pred C
Confidence 4
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.30 E-value=5.7e-09 Score=84.40 Aligned_cols=193 Identities=12% Similarity=0.009 Sum_probs=94.0
Q ss_pred cCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 036577 76 SSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155 (470)
Q Consensus 76 ~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 155 (470)
-.+.+++..|++..|.+.++++++.+|. +..+|..+...|.+.|+.+.|.+.|++..+.. +.+..+.|.....+|..
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs--~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPS--YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhC
Confidence 3344455555555555555555555544 45555555555555555555555555555443 33444555555555555
Q ss_pred CCcchHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 036577 156 GRVSPGFVVLGRILRSC-FTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNL 234 (470)
Q Consensus 156 g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~ 234 (470)
|++++|.+.|++.+... +..-..+|..+.-+..+.|+++.|...|++..+.. +-...+.-.+.......|++..|..+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHH
Confidence 55555555555554421 11122344444444555555555555555554432 11233444444445555555555555
Q ss_pred HHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 036577 235 FEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKM 279 (470)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 279 (470)
++.....+ .++....-..|+.--..|+.+.+-+.=..+
T Consensus 196 ~~~~~~~~-------~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 196 LERYQQRG-------GAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHhcc-------cccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 55554443 344444444444444455544444433333
No 74
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.29 E-value=5.3e-08 Score=90.19 Aligned_cols=357 Identities=14% Similarity=0.141 Sum_probs=239.3
Q ss_pred CccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 036577 80 GDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159 (470)
Q Consensus 80 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 159 (470)
......++++|++.|..++..+++ |...|.-+.-.-++.|+++.....-..+.+.. +.....|..+..++.-.|+..
T Consensus 84 ~~R~dK~Y~eaiKcy~nAl~~~~d--N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~ 160 (700)
T KOG1156|consen 84 LQRSDKKYDEAIKCYRNALKIEKD--NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYK 160 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHH
Confidence 344567899999999999999887 89999888888888999998888888887763 445667888888899999999
Q ss_pred hHHHHHHHHHhCC-CCCCHHHHHHHHH------HHHhcCCHHHHHHHHHHHHhcCCCCCcchH-HHHHHHHHhcCChHHH
Q 036577 160 PGFVVLGRILRSC-FTPDAVTFNSLIK------GLCAESRIMEAAALFTKLKAFGCEPNVITY-STLINGLCRTGHTIVA 231 (470)
Q Consensus 160 ~a~~~~~~~~~~~-~~~~~~~~~~l~~------~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~-~~l~~~~~~~g~~~~a 231 (470)
.|..+++...+.. -.|+...+..... ...+.|.++.|.+.+..-... ..|-..+ ..-...+.+.++.++|
T Consensus 161 ~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA 238 (700)
T KOG1156|consen 161 MALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEA 238 (700)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhH
Confidence 9999999988754 2466666554433 345677888888777665432 1232222 3445677889999999
Q ss_pred HHHHHHHHhcCCCCCcccCCCHhhHH-HHHHHHHhCCCHHHHH-HHHHHHHh----------------------------
Q 036577 232 LNLFEEMANGNGEIGVVCEPNTVTYT-TIIDGLCKEGFVDKAK-ELFLKMKD---------------------------- 281 (470)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~-~~~~~~~~---------------------------- 281 (470)
..++..+.... ||...|. .+..++.+-.+.-++. .+|....+
T Consensus 239 ~~~y~~Ll~rn--------Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdky 310 (700)
T KOG1156|consen 239 VKVYRRLLERN--------PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKY 310 (700)
T ss_pred HHHHHHHHhhC--------chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHH
Confidence 99999998865 4444444 4444443332323333 44444332
Q ss_pred ------CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH----CC----------CCCCHhH--HHHHHHHHHHcCCH
Q 036577 282 ------ENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMD----QG----------VQPNVVT--FNVIMDELCKNGKM 339 (470)
Q Consensus 282 ------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~----------~~~~~~~--~~~l~~~~~~~g~~ 339 (470)
.|++ .++..+...|-.-...+-..++.-.+.. .| -+|.... +..++..+-+.|++
T Consensus 311 L~~~l~Kg~p---~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~ 387 (700)
T KOG1156|consen 311 LRPLLSKGVP---SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDY 387 (700)
T ss_pred HHHHhhcCCC---chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccH
Confidence 2222 1222333333221211111111111111 01 1455444 45567789999999
Q ss_pred HHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 036577 340 DEASRLLDLMIQIGVRPN-AFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSE 418 (470)
Q Consensus 340 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 418 (470)
+.|...++..+.+ .|+ ...|..-.+.+.+.|++++|...+++..+.+ .+|...-.--+.-..++++.++|.++...
T Consensus 388 ~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~sk 464 (700)
T KOG1156|consen 388 EVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSK 464 (700)
T ss_pred HHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHH
Confidence 9999999999987 444 4566677789999999999999999998875 55666555677777889999999999998
Q ss_pred HHHCCCCC--C----HhHHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 036577 419 MLSKGIKP--D----VVIYNTL--FIGLFEIHQVERAFKLFDEMR 455 (470)
Q Consensus 419 ~~~~~~~p--~----~~~~~~l--~~~~~~~g~~~~A~~~~~~m~ 455 (470)
....|... + .-+|..+ ..+|.++|++.+|++-|..+.
T Consensus 465 FTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 465 FTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred hhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 88766410 1 1134333 367888888888887776664
No 75
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.29 E-value=4.7e-08 Score=90.80 Aligned_cols=305 Identities=11% Similarity=0.004 Sum_probs=156.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCH-HHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGL-FPDL-YTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSL 183 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 183 (470)
.+..|..+...+...|+.+.+...+....+... ..+. .........+...|++++|.+.+++.++.. +.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~- 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL- 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-
Confidence 456666677777777777776666666544321 1121 222233345566777888888877777652 334434432
Q ss_pred HHHHH----hcCCHHHHHHHHHHHHhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHH
Q 036577 184 IKGLC----AESRIMEAAALFTKLKAFGCEPN-VITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTT 258 (470)
Q Consensus 184 ~~~~~----~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (470)
...+. ..+..+.+.+.++.. ....|+ ......+...+...|++++|.+.+++..+.. +.+...+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-------p~~~~~~~~ 153 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-------PDDAWAVHA 153 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCcHHHHH
Confidence 22222 234444444444431 111122 2233344556677788888888888877765 455666777
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCCHhHH-H--HHHH
Q 036577 259 IIDGLCKEGFVDKAKELFLKMKDENI-NPNV--VTYNSLIHGFCYANDWNEAKCLLIEMMDQGV-QPNVVTF-N--VIMD 331 (470)
Q Consensus 259 l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~ 331 (470)
+..++...|++++|...+++...... .++. ..|..+...+...|++++|..++++...... .+..... + .++.
T Consensus 154 la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 233 (355)
T cd05804 154 VAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLW 233 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHH
Confidence 77777778888888888777665421 1222 2344566777777888888888777654321 1111111 1 2222
Q ss_pred HHHHcCCHHHHHHH--HHHHHHcCC--CCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC------C--CHHHHHHH
Q 036577 332 ELCKNGKMDEASRL--LDLMIQIGV--RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCM------H--DVFSYSIL 399 (470)
Q Consensus 332 ~~~~~g~~~~a~~~--~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~--~~~~~~~l 399 (470)
-+...|....+.++ +........ ............++...|+.+.|..+++.+...... . .....-..
T Consensus 234 ~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~ 313 (355)
T cd05804 234 RLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAE 313 (355)
T ss_pred HHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHH
Confidence 23333333322222 111111100 001111124455566677777777777666542111 0 11112222
Q ss_pred HHHHHHcCChhHHHHHHHHHHH
Q 036577 400 INGYCKNKEIEGALSLYSEMLS 421 (470)
Q Consensus 400 ~~~~~~~g~~~~A~~~~~~~~~ 421 (470)
..++...|+.++|.+.+.+.+.
T Consensus 314 A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 314 ALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3334566667777666666553
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.28 E-value=9.3e-09 Score=83.20 Aligned_cols=197 Identities=13% Similarity=0.021 Sum_probs=115.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHH
Q 036577 180 FNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTI 259 (470)
Q Consensus 180 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 259 (470)
...|.-.|...|+...|..-+++.+++. +-+..+|..+...|.+.|+.+.|.+.|++..... +.+..+.|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-------p~~GdVLNNY 109 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-------PNNGDVLNNY 109 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-------CCccchhhhh
Confidence 4445556666666666666666666542 2234556666666666666666666666666654 4455666666
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCC
Q 036577 260 IDGLCKEGFVDKAKELFLKMKDE-NINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGK 338 (470)
Q Consensus 260 ~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 338 (470)
...+|..|++++|...|+..... ....-..+|..+.-+..+.|+.+.|...|++..+.. +-.....-.+.....+.|+
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGD 188 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhccc
Confidence 66666666666666666666553 112233455566666666666666666666666553 2233445555555666666
Q ss_pred HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 036577 339 MDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMES 386 (470)
Q Consensus 339 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 386 (470)
+..|...++.....+. ++...+-..|+.-...|+.+.+.++=.++.+
T Consensus 189 y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 189 YAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred chHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6666666666655544 4555555555555566666665555444443
No 77
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.26 E-value=2.8e-07 Score=87.28 Aligned_cols=341 Identities=16% Similarity=0.067 Sum_probs=230.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCC-CHHHHHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTP-DAVTFNSLI 184 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~ 184 (470)
++..|..+.-++...|+++.+.+.|++....- .-..+.|..+...+...|.-..|..+++.-....-.| +...+-..-
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 68889999999999999999999999876542 4456789999999999999999999998876543223 344444444
Q ss_pred HHHH-hcCCHHHHHHHHHHHHhc--CC--CCCcchHHHHHHHHHh-----------cCChHHHHHHHHHHHhcCCCCCcc
Q 036577 185 KGLC-AESRIMEAAALFTKLKAF--GC--EPNVITYSTLINGLCR-----------TGHTIVALNLFEEMANGNGEIGVV 248 (470)
Q Consensus 185 ~~~~-~~g~~~~a~~~~~~~~~~--g~--~~~~~~~~~l~~~~~~-----------~g~~~~a~~~~~~~~~~~~~~~~~ 248 (470)
..|. +.+.+++++.+-.+..+. +. ......|..+.-+|.. .....++++.+++..+.++
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~----- 475 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP----- 475 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC-----
Confidence 4443 456777777777666652 11 1223344444444432 1224568888888887763
Q ss_pred cCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-CC--------
Q 036577 249 CEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ-GV-------- 319 (470)
Q Consensus 249 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~-------- 319 (470)
.|+.+...+.--|+..++.+.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+..... |.
T Consensus 476 --~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~ 553 (799)
T KOG4162|consen 476 --TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK 553 (799)
T ss_pred --CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence 3444444444556667788888888888877755567777877777777777777777766544321 00
Q ss_pred --------------------------------------------------------------------------------
Q 036577 320 -------------------------------------------------------------------------------- 319 (470)
Q Consensus 320 -------------------------------------------------------------------------------- 319 (470)
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence
Q ss_pred -----C--CC------HhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 036577 320 -----Q--PN------VVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMES 386 (470)
Q Consensus 320 -----~--~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 386 (470)
. |+ ...|......+.+.++.++|...+.+..... ......|......+...|..++|.+.|.....
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 0 00 0111222333444444555554444444432 22344455555666677888888888877776
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChhHHHH--HHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036577 387 NRCMHDVFSYSILINGYCKNKEIEGALS--LYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRD 457 (470)
Q Consensus 387 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (470)
.+ +.++....++..++.+.|+..-|.. ++.++.+.+.. +...|..+...+.+.|+.+.|.+.|....+.
T Consensus 713 ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 713 LD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred cC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 54 3467788999999999999888888 99999987644 7889999999999999999999999998863
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.26 E-value=6.7e-09 Score=92.89 Aligned_cols=94 Identities=15% Similarity=0.001 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHH
Q 036577 180 FNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTI 259 (470)
Q Consensus 180 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 259 (470)
|..+...|...|+.++|...|++..+.. +.+...|+.+...+...|++++|.+.|++..+.. +.+..+|..+
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-------P~~~~a~~~l 138 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-------PTYNYAYLNR 138 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHH
Confidence 4444444444555555555554444432 1233444444445555555555555555544433 2233444444
Q ss_pred HHHHHhCCCHHHHHHHHHHHHh
Q 036577 260 IDGLCKEGFVDKAKELFLKMKD 281 (470)
Q Consensus 260 ~~~~~~~g~~~~a~~~~~~~~~ 281 (470)
..++...|++++|.+.|+...+
T Consensus 139 g~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 139 GIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 4444445555555555544444
No 79
>PF13041 PPR_2: PPR repeat family
Probab=99.25 E-value=2.3e-11 Score=76.29 Aligned_cols=49 Identities=49% Similarity=0.931 Sum_probs=27.0
Q ss_pred CCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036577 251 PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFC 299 (470)
Q Consensus 251 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 299 (470)
||..+|+.++++|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 80
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=3.8e-08 Score=86.27 Aligned_cols=287 Identities=15% Similarity=0.051 Sum_probs=201.9
Q ss_pred CChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 036577 121 KHYDTVLSLFKRLNST-GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD-AVTFNSLIKGLCAESRIMEAAA 198 (470)
Q Consensus 121 ~~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~ 198 (470)
++...|.+.+-.+... -++.|+.....+..++...|+.++|...|+..... .|+ ........-.+.+.|+.+....
T Consensus 210 ~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 210 FKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred cccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHH
Confidence 4444444443333222 34667888888999999999999999999887754 333 2223333444567888888888
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHH
Q 036577 199 LFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLK 278 (470)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 278 (470)
+...+.... +-+...|-.-+.......+++.|+.+-++.++.+ +.+...|-.-...+...|+.++|.-.|+.
T Consensus 288 L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-------~r~~~alilKG~lL~~~~R~~~A~IaFR~ 359 (564)
T KOG1174|consen 288 LMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-------PRNHEALILKGRLLIALERHTQAVIAFRT 359 (564)
T ss_pred HHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-------cccchHHHhccHHHHhccchHHHHHHHHH
Confidence 887776531 2234445555555667788888998888888765 55666777777788888999999988888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHH-HHHH-HcCCHHHHHHHHHHHHHcCCCC
Q 036577 279 MKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIM-DELC-KNGKMDEASRLLDLMIQIGVRP 356 (470)
Q Consensus 279 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~ 356 (470)
..... +-+..+|..|+.+|...|.+.+|..+-+...+.- +.+..+...+. ..+. ....-++|..+++...+..+.
T Consensus 360 Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~- 436 (564)
T KOG1174|consen 360 AQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI- 436 (564)
T ss_pred HHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-
Confidence 77652 3477889999999999999998887777665541 34555555552 3332 223357788888888776332
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 357 NAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
-....+.+...+...|..+.++.+++..... .||....+.|.+.+...+.+++|.+.|...+..
T Consensus 437 Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 437 YTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred cHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 2445667778888889999999998887764 578888888999898899999999988888754
No 81
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=3e-07 Score=84.51 Aligned_cols=364 Identities=16% Similarity=0.116 Sum_probs=207.2
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchH
Q 036577 82 ITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPG 161 (470)
Q Consensus 82 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 161 (470)
...+++++|.+....++...|. +..++..-+.++.+.++|++|+.+.+.-... .-+..-+..-.-+..+.+..++|
T Consensus 23 ~~~~e~e~a~k~~~Kil~~~pd--d~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 23 GKNGEYEEAVKTANKILSIVPD--DEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred ccchHHHHHHHHHHHHHhcCCC--cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHH
Confidence 3567899999999999998876 7778888888899999999999655432211 11111111223344577889999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---------------------------CCcch
Q 036577 162 FVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCE---------------------------PNVIT 214 (470)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~---------------------------~~~~~ 214 (470)
+..++... +.+..+...-...+.+.|++++|..+|+.+.+.+.+ ....+
T Consensus 99 lk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~s 174 (652)
T KOG2376|consen 99 LKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDS 174 (652)
T ss_pred HHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcch
Confidence 88887322 223446666677788899999999999888544311 01223
Q ss_pred HHHH---HHHHHhcCChHHHHHHHHHHHhcCCCCC-------cccCCCH-hhHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 036577 215 YSTL---INGLCRTGHTIVALNLFEEMANGNGEIG-------VVCEPNT-VTYTTIIDGLCKEGFVDKAKELFLKMKDEN 283 (470)
Q Consensus 215 ~~~l---~~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 283 (470)
|..+ ...++..|++.+|+++++.....+.+.- ..+.... ..-.-+..++-..|+-++|..++.......
T Consensus 175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 3333 3345678999999999999833221100 0001111 112334556778999999999999988764
Q ss_pred CCCCH----HHHHHHHHHHHccCCHH----------------HHHHHHH-------------------------HHHHC-
Q 036577 284 INPNV----VTYNSLIHGFCYANDWN----------------EAKCLLI-------------------------EMMDQ- 317 (470)
Q Consensus 284 ~~~~~----~~~~~li~~~~~~~~~~----------------~a~~~~~-------------------------~~~~~- 317 (470)
. +|. +.-|.|+..-....-++ .+..-+. +....
T Consensus 255 ~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l 333 (652)
T KOG2376|consen 255 P-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASL 333 (652)
T ss_pred C-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC
Confidence 3 232 12222222111110000 0000000 00000
Q ss_pred -CCCCCHhHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHH--------HHHH
Q 036577 318 -GVQPNVVTFNVIMDELCK--NGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFV--------SMES 386 (470)
Q Consensus 318 -~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~ 386 (470)
+..|. ..+..++..+.+ ......+..++...-+....-...+.-..+......|+++.|.+++. .+.+
T Consensus 334 p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~ 412 (652)
T KOG2376|consen 334 PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE 412 (652)
T ss_pred CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh
Confidence 11222 233333333222 22355666666666555333334455566677778888888888888 4555
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC--CCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036577 387 NRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK--GIKPD----VVIYNTLFIGLFEIHQVERAFKLFDEMRRD 457 (470)
Q Consensus 387 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (470)
.+..|. +...+...+.+.++-+.|..++.+.+.. .-.+. ..++.-+...-.+.|+.++|..+++++.+.
T Consensus 413 ~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 413 AKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred hccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 444443 4445666677777777777776665531 00111 123333444455678888888888888773
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.22 E-value=2e-07 Score=86.63 Aligned_cols=307 Identities=12% Similarity=0.016 Sum_probs=193.4
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHH
Q 036577 141 DLYTYNILINCFCKMGRVSPGFVVLGRILRSCF-TPDA-VTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTL 218 (470)
Q Consensus 141 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 218 (470)
....|..+...+...|+.+.+.+.+....+... ..+. .........+...|++++|.+.+++..+.. +.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~- 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL- 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-
Confidence 345666777777788888887777777665321 1222 222233445667899999999999988753 334444442
Q ss_pred HHHHHh----cCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 036577 219 INGLCR----TGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSL 294 (470)
Q Consensus 219 ~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 294 (470)
...+.. .+....+.+.++..... .+........+...+...|++++|.+.+++..+.. +.+...+..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~l 154 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWAPE-------NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAV 154 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccCcC-------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHH
Confidence 222222 44555555555541111 23344555667788899999999999999999874 3456778888
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCC-CCCH--hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHhHH-H--HHHHH
Q 036577 295 IHGFCYANDWNEAKCLLIEMMDQGV-QPNV--VTFNVIMDELCKNGKMDEASRLLDLMIQIGVR-PNAFVY-N--TLMDG 367 (470)
Q Consensus 295 i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~-~--~l~~~ 367 (470)
...+...|++++|...+++..+... .++. ..|..+...+...|++++|..++++....... +..... + .++..
T Consensus 155 a~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 234 (355)
T cd05804 155 AHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWR 234 (355)
T ss_pred HHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHH
Confidence 9999999999999999999887532 1232 34557888899999999999999998654331 122111 1 23333
Q ss_pred HHcCCCHHHHHHH---HHHHHHCCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-------C-CHhHHHHHH
Q 036577 368 FCLTGRVNRAKEL---FVSMESNRC-MHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIK-------P-DVVIYNTLF 435 (470)
Q Consensus 368 ~~~~g~~~~A~~~---~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------p-~~~~~~~l~ 435 (470)
+...|....+.+. ......... ............++...|+.++|..+++.+...... . .........
T Consensus 235 ~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A 314 (355)
T cd05804 235 LELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEA 314 (355)
T ss_pred HHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHH
Confidence 4445543333332 111111100 111222235667788899999999999988763211 0 112222233
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 036577 436 IGLFEIHQVERAFKLFDEMRRD 457 (470)
Q Consensus 436 ~~~~~~g~~~~A~~~~~~m~~~ 457 (470)
.++...|++++|.+.+......
T Consensus 315 ~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 315 LYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 5566899999999999988754
No 83
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.4e-07 Score=85.81 Aligned_cols=374 Identities=12% Similarity=0.121 Sum_probs=227.8
Q ss_pred CCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc
Q 036577 77 SGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPD-LYTYNILINCFCKM 155 (470)
Q Consensus 77 ~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~ 155 (470)
.|...++.|+++.|+.+|...+...|. +...|..-..+|+..|+|++|++=-.+-.+. .|+ ...|.....++.-.
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~l~p~--nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIMLSPT--NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGL 83 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHccCCC--ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhc
Confidence 344567789999999999999998876 8889999999999999999998877766665 454 45899999999999
Q ss_pred CCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH---HHHHHHHhc---CCCCCcchHHHHHHHHHh-----
Q 036577 156 GRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAA---ALFTKLKAF---GCEPNVITYSTLINGLCR----- 224 (470)
Q Consensus 156 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~---~~~~~~~~~---g~~~~~~~~~~l~~~~~~----- 224 (470)
|++++|+.-|.+-++.. +.+...++.+..++.......+.. .++..+... ........|..++..+-+
T Consensus 84 g~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred ccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 99999999999988763 445667777777762110000000 000000000 000001112222221110
Q ss_pred -----cCChHHHHHHHHHH-----HhcCCCC-CcccCC----------------------CHhhHHHHHHHHHhCCCHHH
Q 036577 225 -----TGHTIVALNLFEEM-----ANGNGEI-GVVCEP----------------------NTVTYTTIIDGLCKEGFVDK 271 (470)
Q Consensus 225 -----~g~~~~a~~~~~~~-----~~~~~~~-~~~~~~----------------------~~~~~~~l~~~~~~~g~~~~ 271 (470)
-.++..+...+... ...+... .....| -..-...+.++..+..+++.
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 00011111111000 0000000 000000 11236677777778888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHH-------HHHHHHHcCCHHHHHH
Q 036577 272 AKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNV-------IMDELCKNGKMDEASR 344 (470)
Q Consensus 272 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~g~~~~a~~ 344 (470)
|.+-+....... -+..-++....+|...|.+.++...-....+.|.. ...-|+. +..+|.+.++++.++.
T Consensus 243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~ 319 (539)
T KOG0548|consen 243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIK 319 (539)
T ss_pred HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence 888887777653 35555566667777777777777776666655421 2222322 2334555666777777
Q ss_pred HHHHHHHcCCCCCHhH-------------------------HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036577 345 LLDLMIQIGVRPNAFV-------------------------YNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSIL 399 (470)
Q Consensus 345 ~~~~~~~~~~~~~~~~-------------------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 399 (470)
.|.+.......|+... ...-...+.+.|++..|...|.+++... +.|...|...
T Consensus 320 ~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNR 398 (539)
T KOG0548|consen 320 YYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNR 398 (539)
T ss_pred HHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHH
Confidence 7776655433333221 1112445667888899999888888876 5588888888
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 036577 400 INGYCKNKEIEGALSLYSEMLSKGIKPD-VVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADT 463 (470)
Q Consensus 400 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 463 (470)
.-||.+.|.+..|++=.+..++. .|+ ...|.-=..++....+++.|.+.|++.++ +.|+.
T Consensus 399 Aac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale--~dp~~ 459 (539)
T KOG0548|consen 399 AACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALE--LDPSN 459 (539)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCchh
Confidence 88899999988888887777765 333 33555555666667788888888888776 33543
No 84
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.20 E-value=2.8e-07 Score=79.03 Aligned_cols=296 Identities=11% Similarity=0.058 Sum_probs=214.2
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcC
Q 036577 78 GEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT-YNILINCFCKMG 156 (470)
Q Consensus 78 ~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g 156 (470)
|...+..|++.+|+.-|..+++.+|. +-.++-.-...|...|+-..|+.-+.+.++. +||-.. --.-...+.+.|
T Consensus 45 Gk~lla~~Q~sDALt~yHaAve~dp~--~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAAVEGDPN--NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCCch--hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcc
Confidence 34456678899999999999997776 6666667778888999999999999998886 677442 233456778999
Q ss_pred CcchHHHHHHHHHhCCCCCC--HH------------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 036577 157 RVSPGFVVLGRILRSCFTPD--AV------------TFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGL 222 (470)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~--~~------------~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 222 (470)
.+++|..-|+.+++...... .. .....+..+...|+...|+.....+++.. +-|...+..-..+|
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCY 199 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHH
Confidence 99999999999988642111 11 12223445566889999999999988753 45777778888899
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHH----HHH----
Q 036577 223 CRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTY----NSL---- 294 (470)
Q Consensus 223 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~l---- 294 (470)
...|+...|+.-++...... ..++.++.-+-..+...|+.+.++...++.++. .||.... ..+
T Consensus 200 i~~~e~k~AI~Dlk~askLs-------~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLS-------QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HhcCcHHHHHHHHHHHHhcc-------ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHH
Confidence 99999999988888776654 557778888888888999999999998888875 4554322 111
Q ss_pred -----HHHHHccCCHHHHHHHHHHHHHCCCCCCHhH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 036577 295 -----IHGFCYANDWNEAKCLLIEMMDQGVQPNVVT---FNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMD 366 (470)
Q Consensus 295 -----i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 366 (470)
+......++|.++++-.+..++......... +..+-.++...|++.+|++...+++..... |+.++.--..
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~l~dRAe 349 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQVLCDRAE 349 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHHHHHHHH
Confidence 1223456777788877777777642212222 334445666778888888888888876432 5778888888
Q ss_pred HHHcCCCHHHHHHHHHHHHHCC
Q 036577 367 GFCLTGRVNRAKELFVSMESNR 388 (470)
Q Consensus 367 ~~~~~g~~~~A~~~~~~~~~~~ 388 (470)
+|.-...++.|+.-|+...+.+
T Consensus 350 A~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhcC
Confidence 8888888888888888887764
No 85
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.18 E-value=2.8e-06 Score=79.08 Aligned_cols=394 Identities=12% Similarity=0.101 Sum_probs=253.8
Q ss_pred HHHHHhhhhccCChhhHHHHHHHHhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 036577 50 AKLKESLRLTVKDRASLEKFLRERFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSL 129 (470)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 129 (470)
....++|+..+.+..-....+..+....-+.+.-...++.--..|+..+..... -+..|...+..+.++|+...-...
T Consensus 47 ~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHk--mpRIwl~Ylq~l~~Q~~iT~tR~t 124 (835)
T KOG2047|consen 47 LLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHK--MPRIWLDYLQFLIKQGLITRTRRT 124 (835)
T ss_pred HHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHhcchHHHHHHH
Confidence 344556664444444344444333333322222223344444445544442222 345788889999999999999999
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-
Q 036577 130 FKRLNST-GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFG- 207 (470)
Q Consensus 130 ~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g- 207 (470)
|+..+.. .+......|...+.-....|-++.+..++++-++. ++..-+-.+..+++.+++++|-+.+.......
T Consensus 125 fdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~ 200 (835)
T KOG2047|consen 125 FDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDE 200 (835)
T ss_pred HHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchh
Confidence 9987664 33344557888888888888899999999999875 33446778888999999999999998876431
Q ss_pred -----CCCCcchHHHHHHHHHhcCChH---HHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 036577 208 -----CEPNVITYSTLINGLCRTGHTI---VALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKM 279 (470)
Q Consensus 208 -----~~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 279 (470)
.+.+-..|..+.....+.-+.. ....+++.+.... ...-...|.+|.+.|.+.|.+++|..+|++.
T Consensus 201 f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf------tDq~g~Lw~SLAdYYIr~g~~ekarDvyeea 274 (835)
T KOG2047|consen 201 FVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF------TDQLGFLWCSLADYYIRSGLFEKARDVYEEA 274 (835)
T ss_pred hhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC------cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 2344556666666665554433 2344455554433 1223467899999999999999999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHHccC----------------------CHHHHHHHHHHHHHCC-----------CCCCHhHH
Q 036577 280 KDENINPNVVTYNSLIHGFCYAN----------------------DWNEAKCLLIEMMDQG-----------VQPNVVTF 326 (470)
Q Consensus 280 ~~~~~~~~~~~~~~li~~~~~~~----------------------~~~~a~~~~~~~~~~~-----------~~~~~~~~ 326 (470)
... ..++.-|..+.+.|+.-. +++-...-|+.+...+ -+.++..|
T Consensus 275 i~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW 352 (835)
T KOG2047|consen 275 IQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEW 352 (835)
T ss_pred HHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHH
Confidence 775 234444555555444221 1222333333333321 12233344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------CHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC---HHHHH
Q 036577 327 NVIMDELCKNGKMDEASRLLDLMIQIGVRP------NAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHD---VFSYS 397 (470)
Q Consensus 327 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~ 397 (470)
..-+. ...|+..+-...+.++++. +.| -...|..+.+.|-..|+++.|+.+|++......+-- ..+|.
T Consensus 353 ~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~ 429 (835)
T KOG2047|consen 353 HKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWC 429 (835)
T ss_pred Hhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHH
Confidence 33333 2356777778888887765 222 235688889999999999999999999887643322 45566
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCC----------C-------CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 036577 398 ILINGYCKNKEIEGALSLYSEMLSKGIK----------P-------DVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVA 460 (470)
Q Consensus 398 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------p-------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 460 (470)
.....-.+..+++.|+++.+......-. | +...|..+++.....|-++....+++++++..+.
T Consensus 430 ~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria 509 (835)
T KOG2047|consen 430 AWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA 509 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Confidence 6666677788999999998877532111 1 2456667777777789999999999999886543
No 86
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.14 E-value=3.7e-07 Score=95.82 Aligned_cols=342 Identities=13% Similarity=-0.006 Sum_probs=216.0
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCC------CCC--HHHHHHHHHH
Q 036577 115 GCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCF------TPD--AVTFNSLIKG 186 (470)
Q Consensus 115 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~ 186 (470)
..+...|+++.+..+++.+.......+..........+...|+++++..+++.....-- .+. ......+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 34445677777767666552211112222334455566778999999998887754210 111 1222333455
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCC----cchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHH
Q 036577 187 LCAESRIMEAAALFTKLKAFGCEPN----VITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDG 262 (470)
Q Consensus 187 ~~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 262 (470)
+...|++++|...+++....-...+ ....+.+...+...|++++|...+++........+. ......++..+...
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~-~~~~~~~~~~la~~ 540 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDV-YHYALWSLLQQSEI 540 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc-hHHHHHHHHHHHHH
Confidence 6689999999999998876311111 123455666778899999999999988754321110 11123455667778
Q ss_pred HHhCCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC--CCC--CHhHHHHHHH
Q 036577 263 LCKEGFVDKAKELFLKMKDE----NIN--P-NVVTYNSLIHGFCYANDWNEAKCLLIEMMDQG--VQP--NVVTFNVIMD 331 (470)
Q Consensus 263 ~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~ 331 (470)
+...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 88999999999998886542 211 1 22344555667778899999999998875531 112 2334455666
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCC-HhHH-----HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 036577 332 ELCKNGKMDEASRLLDLMIQIGVRPN-AFVY-----NTLMDGFCLTGRVNRAKELFVSMESNRCMHD---VFSYSILING 402 (470)
Q Consensus 332 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~ 402 (470)
.+...|++++|...++.......... ...+ ...+..+...|+.+.|...+........... ...+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 78899999999999988765311111 1111 1122444568999999998876544221111 1124567778
Q ss_pred HHHcCChhHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036577 403 YCKNKEIEGALSLYSEMLSK----GIKPD-VVIYNTLFIGLFEIHQVERAFKLFDEMRRD 457 (470)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (470)
+...|++++|...+++.... |..++ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88999999999999988753 33322 235666778889999999999999999864
No 87
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.13 E-value=4.4e-07 Score=85.97 Aligned_cols=259 Identities=12% Similarity=0.048 Sum_probs=163.9
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 036577 160 PGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMA 239 (470)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 239 (470)
++++.+++..+.+ +.|..+...+.--|+..++++.|.+...+..+.+-..+...|..+.-.+...+++.+|+.+.+...
T Consensus 462 kslqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 462 KSLQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred HHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4445555555543 223333333444566677777777777777776555667777777777777777777777777766
Q ss_pred hcCCCCCc-------------ccCCCHhhHHHHHHHHHh------C-----------------CCHHHHHHHHHHHH---
Q 036577 240 NGNGEIGV-------------VCEPNTVTYTTIIDGLCK------E-----------------GFVDKAKELFLKMK--- 280 (470)
Q Consensus 240 ~~~~~~~~-------------~~~~~~~~~~~l~~~~~~------~-----------------g~~~~a~~~~~~~~--- 280 (470)
+.-+.... ....-..|...++..+-. . ++..++.+....+.
T Consensus 541 ~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~ 620 (799)
T KOG4162|consen 541 EEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLV 620 (799)
T ss_pred HHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHH
Confidence 54321000 000011122222222210 0 01111111111100
Q ss_pred -----hCC----C-------CCC------HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCC
Q 036577 281 -----DEN----I-------NPN------VVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGK 338 (470)
Q Consensus 281 -----~~~----~-------~~~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 338 (470)
..+ . .|+ ...|......+.+.+..++|...+.+..+.. +.....|......+...|.
T Consensus 621 a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~ 699 (799)
T KOG4162|consen 621 ASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQ 699 (799)
T ss_pred HhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHh
Confidence 000 0 011 1223344556667777777777776666553 4556677777788889999
Q ss_pred HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 036577 339 MDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKE--LFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLY 416 (470)
Q Consensus 339 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 416 (470)
.++|.+.|......++. ++...+++..++.+.|+...|.. ++..+.+.+ +.+...|..+...+-+.|+.+.|.+.|
T Consensus 700 ~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 700 LEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECF 777 (799)
T ss_pred hHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHH
Confidence 99999999999987654 67788999999999999888888 999998876 559999999999999999999999999
Q ss_pred HHHHHC
Q 036577 417 SEMLSK 422 (470)
Q Consensus 417 ~~~~~~ 422 (470)
....+.
T Consensus 778 ~aa~qL 783 (799)
T KOG4162|consen 778 QAALQL 783 (799)
T ss_pred HHHHhh
Confidence 988764
No 88
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.07 E-value=2.8e-06 Score=73.13 Aligned_cols=301 Identities=12% Similarity=0.069 Sum_probs=226.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHH-HHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVT-FNSLI 184 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~ 184 (470)
++.-..-+...+...|++..|+.-|....+.+ +.+-.++..-...|...|+...|+.-+.+.++. +||-.. --.-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 44455567777888999999999999988753 334446666678899999999999999999886 676432 22234
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCcc----h------------HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcc
Q 036577 185 KGLCAESRIMEAAALFTKLKAFGCEPNVI----T------------YSTLINGLCRTGHTIVALNLFEEMANGNGEIGVV 248 (470)
Q Consensus 185 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~----~------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 248 (470)
..+.+.|.++.|..=|+..+.+. |+.. . ....+..+.-.|+...|+.....+.+..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~------ 185 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ------ 185 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC------
Confidence 56789999999999999998764 3211 1 1233455667899999999999999875
Q ss_pred cCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhH---
Q 036577 249 CEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVT--- 325 (470)
Q Consensus 249 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--- 325 (470)
+-|...|..-..+|...|++..|+.-++...+..- .+..++--+-..+...|+.+.++...++.++. .||...
T Consensus 186 -~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~ 261 (504)
T KOG0624|consen 186 -PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFP 261 (504)
T ss_pred -cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHH
Confidence 66888889999999999999999988877766532 35666777788889999999999999998876 455322
Q ss_pred -HHHH---------HHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHH---HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 036577 326 -FNVI---------MDELCKNGKMDEASRLLDLMIQIGVRPNAFVY---NTLMDGFCLTGRVNRAKELFVSMESNRCMHD 392 (470)
Q Consensus 326 -~~~l---------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 392 (470)
|-.+ +......+++.++.+-.+...+..+......| ..+-.++...|++.+|++...++++.. +.|
T Consensus 262 ~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~d 340 (504)
T KOG0624|consen 262 FYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDD 340 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chH
Confidence 2111 12234567788888888888877554333333 345566778899999999999988763 336
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 393 VFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 393 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
+.++.--..+|.-...+|+|+.-|+...+.
T Consensus 341 v~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 341 VQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 888888889999999999999999988765
No 89
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=2.5e-07 Score=77.78 Aligned_cols=317 Identities=14% Similarity=0.141 Sum_probs=176.9
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCcch
Q 036577 82 ITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNI-LINCFCKMGRVSP 160 (470)
Q Consensus 82 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~-li~~~~~~g~~~~ 160 (470)
+...++++|++++..-.++.|. +......+..+|....++..|-+.|+.+-.. .|...-|.. -.+.+.+.+.+.+
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~--~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~AD 96 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPR--SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYAD 96 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHH
Confidence 3445677777777777666654 6666777777777777777787777777654 454444433 3455667777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 036577 161 GFVVLGRILRSCFTPDAVTFNSLI----KGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFE 236 (470)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 236 (470)
|+.+...|... ++ ..+..+ ......+++..+..+.++.... .+..+.+.......+.|++++|.+-|+
T Consensus 97 ALrV~~~~~D~---~~--L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 97 ALRVAFLLLDN---PA--LHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HHHHHHHhcCC---HH--HHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHHHH
Confidence 77777766532 11 112111 1223456777777777776643 245555555555667788888888887
Q ss_pred HHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-------------CH---------------
Q 036577 237 EMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINP-------------NV--------------- 288 (470)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~~--------------- 288 (470)
...+-++ -.....|+.-+ +..+.|+++.|++...++.++|++. |+
T Consensus 169 aAlqvsG------yqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 169 AALQVSG------YQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHhhcC------CCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 7776653 22334554433 4455677778888777777776531 11
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 036577 289 VTYNSLIHGFCYANDWNEAKCLLIEMMDQ-GVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDG 367 (470)
Q Consensus 289 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 367 (470)
..+|.-...+.+.|+++.|.+.+..|.-. ....|++|...+.-. -..+++.+..+-+.-+...++- ...||..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-PPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-ChHHHHHHHHH
Confidence 11222223345666777777666666422 123455555544322 1234455555555555555442 44666667777
Q ss_pred HHcCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 036577 368 FCLTGRVNRAKELFVSMESNRC-MHDVFSYSILINGYCKNKEIEGALSLYSEM 419 (470)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (470)
|++..-++.|-+++.+-..... -.+...|+.+=......-..++|.+-++.+
T Consensus 320 yCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 7777777777666643222110 013333432222222334556666555544
No 90
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=8e-07 Score=80.94 Aligned_cols=236 Identities=14% Similarity=0.069 Sum_probs=160.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHH-
Q 036577 180 FNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTT- 258 (470)
Q Consensus 180 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~- 258 (470)
...+.+...+..+++.|++.+....+.. -+..-++....+|...|.+.++........+.+++ ....|+.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-------~rad~klI 297 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-------LRADYKLI 297 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-------HHHHHHHH
Confidence 4557777778888999999999888764 45555677778899999999988888887777643 2233333
Q ss_pred ------HHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHH
Q 036577 259 ------IIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNV-VTFNVIMD 331 (470)
Q Consensus 259 ------l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~ 331 (470)
+..+|.+.++++.+...|.+.......|+. ..+....+++....+...-. .|.. .-...-..
T Consensus 298 ak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGn 366 (539)
T KOG0548|consen 298 AKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGN 366 (539)
T ss_pred HHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHH
Confidence 334566678889999999887665433332 22334445555554443332 2222 11222255
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhH
Q 036577 332 ELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEG 411 (470)
Q Consensus 332 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 411 (470)
.+.+.|++..|+..|.++++..+. |...|+.-.-+|.+.|.+..|..-.+..++.+ ++....|..=..++....++++
T Consensus 367 e~Fk~gdy~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydk 444 (539)
T KOG0548|consen 367 EAFKKGDYPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDK 444 (539)
T ss_pred HHHhccCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHH
Confidence 677888899999999888888744 78888888888888898888888877777764 4456666666677777788888
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 036577 412 ALSLYSEMLSKGIKPDVVIYNTLFIGLF 439 (470)
Q Consensus 412 A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 439 (470)
|.+.|.+.++.+ |+..-+..-+.-|.
T Consensus 445 Aleay~eale~d--p~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 445 ALEAYQEALELD--PSNAEAIDGYRRCV 470 (539)
T ss_pred HHHHHHHHHhcC--chhHHHHHHHHHHH
Confidence 888888888663 44443333333333
No 91
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.05 E-value=1.4e-08 Score=89.47 Aligned_cols=250 Identities=14% Similarity=0.053 Sum_probs=141.4
Q ss_pred HHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 036577 152 FCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVA 231 (470)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a 231 (470)
+.-.|++..++.-.+ ........+......+.+++...|+++.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 344577777665554 222221223444556677777888766543 3333322 45555554444443333444455
Q ss_pred HHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 036577 232 LNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLL 311 (470)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 311 (470)
+.-+++...... ...+.........++...|++++|++++... .+.......+..|.+.++++.|.+.+
T Consensus 86 l~~l~~~~~~~~-----~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l 154 (290)
T PF04733_consen 86 LEELKELLADQA-----GESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKEL 154 (290)
T ss_dssp HHHHHHCCCTS--------CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHhcc-----ccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHH
Confidence 554444333321 1123333333334555678888887776542 25566667777888888888888888
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 036577 312 IEMMDQGVQPNVVTFNVIMDELCK----NGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESN 387 (470)
Q Consensus 312 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (470)
+.|.+.+ .| .+...+..++.. .+++.+|..+|+++.+. ..+++.+.+.++.++...|++++|.+++.+....
T Consensus 155 ~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 155 KNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK 230 (290)
T ss_dssp HHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC
T ss_pred HHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 8877653 23 333334444332 33577888888886554 4567777777888888888888888888777655
Q ss_pred CCCCCHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHC
Q 036577 388 RCMHDVFSYSILINGYCKNKEI-EGALSLYSEMLSK 422 (470)
Q Consensus 388 ~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 422 (470)
+ +-+..+...++.+....|+. +.+.+++.++...
T Consensus 231 ~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 231 D-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp --CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred c-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 4 33666777777777777776 5566677777643
No 92
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.03 E-value=7.2e-09 Score=91.30 Aligned_cols=247 Identities=15% Similarity=0.123 Sum_probs=122.4
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHH
Q 036577 83 TTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGF 162 (470)
Q Consensus 83 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 162 (470)
-.|++..++.-.+ .....+. ........+.+++...|+++.++ .++.... .|.......+...+...++-+.+.
T Consensus 13 y~G~Y~~~i~e~~-~~~~~~~-~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFSPE-NKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp CTT-HHHHCHHHH-CHTSTCH-HHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HhhhHHHHHHHhh-ccCCCch-hHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 3466777665555 2222221 23444555667777777766543 2333322 455555544444333323334444
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 036577 163 VVLGRILRSCFTP-DAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241 (470)
Q Consensus 163 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 241 (470)
.-++......... +..+......++...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4443333222221 2222222334455567777776666432 24445555666667777777777777777654
Q ss_pred CCCCCcccCCCHhhHHHHHHHH----HhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 036577 242 NGEIGVVCEPNTVTYTTIIDGL----CKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ 317 (470)
Q Consensus 242 ~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (470)
+ .| .+...+..++ ...+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+.
T Consensus 161 ~--------eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 161 D--------ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK 230 (290)
T ss_dssp S--------CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC
T ss_pred C--------Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 3 12 2222222222 2233566677777776553 3456666666666666677777777666666554
Q ss_pred CCCCCHhHHHHHHHHHHHcCCH-HHHHHHHHHHHHc
Q 036577 318 GVQPNVVTFNVIMDELCKNGKM-DEASRLLDLMIQI 352 (470)
Q Consensus 318 ~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~ 352 (470)
+ +-+..++..++.+....|+. +.+.+.+.++...
T Consensus 231 ~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 231 D-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp --CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred c-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 3 33455555555555556655 4455566665554
No 93
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=1.6e-06 Score=74.82 Aligned_cols=319 Identities=14% Similarity=0.152 Sum_probs=190.6
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchH
Q 036577 83 TTITPNEAFCIFDYMLNMRPSPPPVSSFNIL-FGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPG 161 (470)
Q Consensus 83 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 161 (470)
..-.+++|++++..++..+|. -...|.. .-+|.+..-++-+.+++.-.++. ++.+....+.......+.-.-..|
T Consensus 163 mR~HYQeAIdvYkrvL~dn~e---y~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~a 238 (557)
T KOG3785|consen 163 MRMHYQEAIDVYKRVLQDNPE---YIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTA 238 (557)
T ss_pred HHHHHHHHHHHHHHHHhcChh---hhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchh
Confidence 334689999999999987654 4444544 44567888888888888877765 344555556555555454444444
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 036577 162 FVVLGRILRSCFTPDAVTFNSLIKGLCA-----ESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFE 236 (470)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 236 (470)
.+-...+...+-.. |- .+.-+++ -..-+.|++++-.+.+. -|. .--.++--|.+.+++.+|..+.+
T Consensus 239 e~E~k~ladN~~~~----~~-f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~K 309 (557)
T KOG3785|consen 239 EDEKKELADNIDQE----YP-FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCK 309 (557)
T ss_pred HHHHHHHHhccccc----ch-hHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHh
Confidence 44444444432111 11 1222222 23446677777666543 232 22344556778899999988877
Q ss_pred HHHhcCCCCCcccCCCHhhHHHHHHHHHhCC-------CHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCCHHHHH
Q 036577 237 EMANGNGEIGVVCEPNTVTYTTIIDGLCKEG-------FVDKAKELFLKMKDENINPNV-VTYNSLIHGFCYANDWNEAK 308 (470)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~ 308 (470)
.+. +.++.-|-.-.-.+...| ...-|.+.|+..-..+..-|. .-...+..++.-..++++.+
T Consensus 310 dl~----------PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl 379 (557)
T KOG3785|consen 310 DLD----------PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVL 379 (557)
T ss_pred hcC----------CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHH
Confidence 663 223333322222233333 244566666555444433222 22345566666667788888
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHH-HHHHHHHHcCCCHHHHHHHHHHHHHC
Q 036577 309 CLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVY-NTLMDGFCLTGRVNRAKELFVSMESN 387 (470)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (470)
..++.+...-...|...+| +..+++..|++.+|+++|-.+....++ |..+| ..|.++|.+++.++.|++++-.+..
T Consensus 380 ~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t- 456 (557)
T KOG3785|consen 380 TYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT- 456 (557)
T ss_pred HHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC-
Confidence 8888777654444444444 678888899999999999888766555 45555 4556788899999998877644432
Q ss_pred CCCCCHHH-HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHH
Q 036577 388 RCMHDVFS-YSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIY 431 (470)
Q Consensus 388 ~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 431 (470)
+.+..+ ...+..-|.+.+.+=-|-+.|+.+... .|++.-|
T Consensus 457 --~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 457 --PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred --chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 223333 334456677888888888888877754 4444444
No 94
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=3.5e-07 Score=76.98 Aligned_cols=294 Identities=13% Similarity=0.049 Sum_probs=180.9
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCC
Q 036577 81 DITTITPNEAFCIFDYMLNMRPSPPPVSSF-NILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINC--FCKMGR 157 (470)
Q Consensus 81 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~ 157 (470)
+....++..|-..++++....|. ..-| -.-...+.+.+.+..|+++...|... ++...-..-+.+ ....++
T Consensus 54 YY~~Q~f~~AA~CYeQL~ql~P~---~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~D 127 (459)
T KOG4340|consen 54 YYRLQEFALAAECYEQLGQLHPE---LEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGD 127 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhhChH---HHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhccccc
Confidence 34456788888888888877654 2222 22356677888899999988777642 222222222222 335677
Q ss_pred cchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 036577 158 VSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEE 237 (470)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 237 (470)
+..+..+++.....| +..+.+.......+.|+++.|.+-|+...+.|--.....|+..+. ..+.|+...|+++..+
T Consensus 128 l~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSE 203 (459)
T KOG4340|consen 128 LPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISE 203 (459)
T ss_pred CcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHH
Confidence 888888887765433 555666666677788999999999988876543334556665554 4467888999999999
Q ss_pred HHhcCCCCCcccC-------CCH---------------hhHHHHHHHHHhCCCHHHHHHHHHHHHhC-CCCCCHHHHHHH
Q 036577 238 MANGNGEIGVVCE-------PNT---------------VTYTTIIDGLCKEGFVDKAKELFLKMKDE-NINPNVVTYNSL 294 (470)
Q Consensus 238 ~~~~~~~~~~~~~-------~~~---------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l 294 (470)
+.+.|-.-..... +|+ ..+|.-...+.+.|+++.|.+.+-+|.-+ ....|++|...+
T Consensus 204 IieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~ 283 (459)
T KOG4340|consen 204 IIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQ 283 (459)
T ss_pred HHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHH
Confidence 8887732111100 011 11333334556788888888888887543 234466666554
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHhHHHHHHHHHHcCCC
Q 036577 295 IHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVR-PNAFVYNTLMDGFCLTGR 373 (470)
Q Consensus 295 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~ 373 (470)
.-. -..+++.+..+-+.-+...+ +-...||..++-.||+..-++.|-.++.+-.....+ .+...|+.|=....-.-.
T Consensus 284 Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~ 361 (459)
T KOG4340|consen 284 ALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTA 361 (459)
T ss_pred HHh-cccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCC
Confidence 422 23455666666666666664 445678888888899988888888777653322111 234444433222233456
Q ss_pred HHHHHHHHHHHHH
Q 036577 374 VNRAKELFVSMES 386 (470)
Q Consensus 374 ~~~A~~~~~~~~~ 386 (470)
.++|.+-++.+..
T Consensus 362 pEea~KKL~~La~ 374 (459)
T KOG4340|consen 362 PEEAFKKLDGLAG 374 (459)
T ss_pred HHHHHHHHHHHHH
Confidence 7777766665543
No 95
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.99 E-value=1.8e-06 Score=90.68 Aligned_cols=313 Identities=13% Similarity=0.008 Sum_probs=203.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC--C----CCC--HHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC----HH
Q 036577 111 NILFGCLAKNKHYDTVLSLFKRLNSTG--L----FPD--LYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD----AV 178 (470)
Q Consensus 111 ~~l~~~~~~~~~~~~A~~~~~~m~~~~--~----~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~ 178 (470)
......+...|++++|..++......- . .+. ......+...+...|++++|...++...+.-...+ ..
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 344555667899999999998775431 0 111 12223344556788999999999999876311122 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---C--CcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcc-cCCC
Q 036577 179 TFNSLIKGLCAESRIMEAAALFTKLKAFGCE---P--NVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVV-CEPN 252 (470)
Q Consensus 179 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~---~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~ 252 (470)
..+.+...+...|++++|...+++....... + ...++..+...+...|++++|...+++........+.. ....
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 4566677788899999999999887643111 1 12344566777889999999999998876543211100 0112
Q ss_pred HhhHHHHHHHHHhCCCHHHHHHHHHHHHhC--CCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHhHH-
Q 036577 253 TVTYTTIIDGLCKEGFVDKAKELFLKMKDE--NINP--NVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQP-NVVTF- 326 (470)
Q Consensus 253 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~- 326 (470)
...+..+...+...|++++|...+++.... ...+ ....+..+...+...|++++|...+.+........ ....+
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 334556667778889999999999887553 1112 23445556677889999999999998875421111 11111
Q ss_pred ----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCC-CHH
Q 036577 327 ----NVIMDELCKNGKMDEASRLLDLMIQIGVRPN---AFVYNTLMDGFCLTGRVNRAKELFVSMESN----RCMH-DVF 394 (470)
Q Consensus 327 ----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~ 394 (470)
...+..+...|+.+.|..++........... ...+..+..++...|+.++|...+++.... +... ...
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 1122445668899999999877654321111 112346777888999999999999887653 2222 234
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 036577 395 SYSILINGYCKNKEIEGALSLYSEMLSKG 423 (470)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 423 (470)
+...+..++.+.|+.++|...+.+..+..
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 56777888999999999999999998753
No 96
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=2.3e-07 Score=85.07 Aligned_cols=251 Identities=16% Similarity=0.054 Sum_probs=135.1
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036577 117 LAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEA 196 (470)
Q Consensus 117 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 196 (470)
+.+.|++.+|.-.|+..++.+ +.+...|..|.......++-..|+..+.+.++.. +.+..+.-.|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 445556666666666655554 4455566666666666666666666666655543 33455555555566666666666
Q ss_pred HHHHHHHHhcCC------C--CCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCC
Q 036577 197 AALFTKLKAFGC------E--PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGF 268 (470)
Q Consensus 197 ~~~~~~~~~~g~------~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 268 (470)
++.++....... . .+...-.. ..+.....+....++|-++....+ ...|+.+...|.-.|.-.|+
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~-----~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLP-----TKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCC-----CCCChhHHhhhHHHHhcchH
Confidence 666555432210 0 00000000 122223333444455555544432 23566666666666666777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHH
Q 036577 269 VDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPN-VVTFNVIMDELCKNGKMDEASRLLD 347 (470)
Q Consensus 269 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 347 (470)
+++|...|+.++... +-|...||-|...++...+.++|+..|.+.++. .|+ +.....|.-+|...|.+++|...|-
T Consensus 446 fdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 777777776666643 235566777776666666777777777766665 343 2344445566666777777666665
Q ss_pred HHHHc---------CCCCCHhHHHHHHHHHHcCCCHHHHHH
Q 036577 348 LMIQI---------GVRPNAFVYNTLMDGFCLTGRVNRAKE 379 (470)
Q Consensus 348 ~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~ 379 (470)
.++.. ...++...|..|=.++.-.++.|.+..
T Consensus 523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 54332 112234555555555555555554433
No 97
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=2e-05 Score=72.93 Aligned_cols=148 Identities=14% Similarity=0.069 Sum_probs=101.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH--------HHHHcCCCCCHhHHHHHHHHHHcCCCH
Q 036577 303 DWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLD--------LMIQIGVRPNAFVYNTLMDGFCLTGRV 374 (470)
Q Consensus 303 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~ 374 (470)
.+..+.+++...-+....-.....-.++......|+++.|.+++. .+.+.+..| .+...+...+.+.++-
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCC
Confidence 466777777766655322223455566778889999999999999 555554444 4556677788888887
Q ss_pred HHHHHHHHHHHHCC--CCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 036577 375 NRAKELFVSMESNR--CMH----DVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAF 448 (470)
Q Consensus 375 ~~A~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 448 (470)
+.|..++...+..- -.+ -..++..++..-.+.|+-++|..+++++.+.. ++|..+...++.+|++. +.+.|.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHH
Confidence 77877777665420 011 22233444444557899999999999999853 55788888999999876 467777
Q ss_pred HHHHHH
Q 036577 449 KLFDEM 454 (470)
Q Consensus 449 ~~~~~m 454 (470)
.+-+.+
T Consensus 512 ~l~k~L 517 (652)
T KOG2376|consen 512 SLSKKL 517 (652)
T ss_pred HHhhcC
Confidence 665544
No 98
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.95 E-value=1.8e-06 Score=82.42 Aligned_cols=337 Identities=15% Similarity=0.099 Sum_probs=199.6
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-C-------CCCCHHHHHHHHHHH
Q 036577 81 DITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNST-G-------LFPDLYTYNILINCF 152 (470)
Q Consensus 81 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-~-------~~~~~~~~~~li~~~ 152 (470)
++..|+.+.|.+-...+ .+...|..+.+.|.+.++.+-|.-.+..|... | ...+..+=.......
T Consensus 738 yvtiG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHH
Confidence 45678999999888777 35678999999999999998887777666432 1 111113333344445
Q ss_pred HhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 036577 153 CKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVAL 232 (470)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~ 232 (470)
.+.|.+++|..+|.+-.+. ..|-..|...|.+++|.++-+.=-... =..||.....-+...++.+.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHH
Confidence 6789999999999887653 345567788999999998765432211 1235556666666788888888
Q ss_pred HHHHHHHhcCCCC-------------CcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036577 233 NLFEEMANGNGEI-------------GVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFC 299 (470)
Q Consensus 233 ~~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 299 (470)
+.|++.....-+. -+.-..|...|......+...|+.+.|+.+|....+ |-.+++..|
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C 949 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKC 949 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEe
Confidence 8887642211000 000122445566666667778888888888877654 344555555
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------CCCCCHhHH--------
Q 036577 300 YANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQI----------GVRPNAFVY-------- 361 (470)
Q Consensus 300 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------~~~~~~~~~-------- 361 (470)
-.|+.++|-++-++ .-|......+...|...|++.+|..+|.+.... +.+ ...+
T Consensus 950 ~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~--d~L~nlal~s~~ 1021 (1416)
T KOG3617|consen 950 IQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMK--DRLANLALMSGG 1021 (1416)
T ss_pred eccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHhhcCc
Confidence 56666666655443 224455555666666666666666665543221 111 1111
Q ss_pred -----------------HHHHHHHHcCCCHHHHHHHHHH--------HHHCCCC--CCHHHHHHHHHHHHHcCChhHHHH
Q 036577 362 -----------------NTLMDGFCLTGRVNRAKELFVS--------MESNRCM--HDVFSYSILINGYCKNKEIEGALS 414 (470)
Q Consensus 362 -----------------~~l~~~~~~~g~~~~A~~~~~~--------~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~ 414 (470)
...+..|-+.|.+.+|+++--+ ++..+.. .|+...+...+.++...++++|..
T Consensus 1022 ~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~ 1101 (1416)
T KOG3617|consen 1022 SDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVN 1101 (1416)
T ss_pred hhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHH
Confidence 1122234455555555543211 1222222 366666666666666666777666
Q ss_pred HHHHHHH--------------------------CCCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHH
Q 036577 415 LYSEMLS--------------------------KGIKPDV----VIYNTLFIGLFEIHQVERAFKLFDE 453 (470)
Q Consensus 415 ~~~~~~~--------------------------~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~ 453 (470)
++-..++ ++-.|+. .....+...|.++|.+..|-+-|-+
T Consensus 1102 lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1102 LLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 5543321 1112333 3555677889999999888766544
No 99
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.94 E-value=3.7e-07 Score=85.97 Aligned_cols=215 Identities=17% Similarity=0.124 Sum_probs=170.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 036577 215 YSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSL 294 (470)
Q Consensus 215 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 294 (470)
-..+...+...|-...|..+|++.. .|..++.+|+..|+..+|..+..+..++ +|+...|..+
T Consensus 401 q~~laell~slGitksAl~I~Erle---------------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE---------------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH---------------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3556677888899999999988874 4566788899999999999988887774 6888888888
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCH
Q 036577 295 IHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRV 374 (470)
Q Consensus 295 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 374 (470)
.+......-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.++- -..+|-.+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhh
Confidence 88887777788888888765432 1222222233478899999999988776533 567788888888899999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036577 375 NRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEM 454 (470)
Q Consensus 375 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 454 (470)
..|.+.|....... +-+...||.+-.+|.+.|+-.+|...+++..+.+ .-+...|...+....+.|.+++|.+.+.++
T Consensus 536 q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99999998887753 4478889999999999999999999999999876 346677888888888999999999999988
Q ss_pred HH
Q 036577 455 RR 456 (470)
Q Consensus 455 ~~ 456 (470)
.+
T Consensus 614 l~ 615 (777)
T KOG1128|consen 614 LD 615 (777)
T ss_pred HH
Confidence 74
No 100
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=3.6e-07 Score=83.88 Aligned_cols=262 Identities=12% Similarity=0.070 Sum_probs=194.4
Q ss_pred HHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChH
Q 036577 150 NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTI 229 (470)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 229 (470)
.-+.+.|++.+|.-.|+..++.. +.+...|..|.......++-..|+..+.+..+.. +-|..+...|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34578899999999999999875 5678999999999999999999999999999863 335677788888899999999
Q ss_pred HHHHHHHHHHhcCCCCCcccC--CCHhhHHHHHHHHHhCCCHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHccCCHHH
Q 036577 230 VALNLFEEMANGNGEIGVVCE--PNTVTYTTIIDGLCKEGFVDKAKELFLKM-KDENINPNVVTYNSLIHGFCYANDWNE 306 (470)
Q Consensus 230 ~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~~~~~~~~~ 306 (470)
+|++.++.............. ++...-.. ..+..........++|-++ ...+..+|..+...|.-.|.-.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999998665421100000 00000000 1222222334455555444 444545677788888888999999999
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 036577 307 AKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMES 386 (470)
Q Consensus 307 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 386 (470)
|.+.|+..+... +-|...||.|...++...+.++|+..|.+.++..+. -+.+.-.|.-.|...|.+++|.+.|-..+.
T Consensus 449 aiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 449 AVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999999999875 667889999999999999999999999999997433 234445577789999999999999876543
Q ss_pred ---C------CCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 036577 387 ---N------RCMHDVFSYSILINGYCKNKEIEGALSLYS 417 (470)
Q Consensus 387 ---~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 417 (470)
+ ...++...|..|=.++.-.++.|-+.+...
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~~ 566 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAAP 566 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhcc
Confidence 2 122356788888888888888886665543
No 101
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.93 E-value=1.2e-06 Score=88.11 Aligned_cols=218 Identities=11% Similarity=0.052 Sum_probs=111.0
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCcchHHHHHHHH
Q 036577 93 IFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNST-GLFPD---LYTYNILINCFCKMGRVSPGFVVLGRI 168 (470)
Q Consensus 93 ~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~ 168 (470)
=|+..+...|. +...|-..|......++.+.|.++.++.+.. ++.-. .-.|..+++.-...|.-+...++|+++
T Consensus 1446 DferlvrssPN--SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1446 DFERLVRSSPN--SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHhcCCC--cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 34444444444 5555666666666666666666666665543 11111 124444444444445555555566665
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcc
Q 036577 169 LRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVV 248 (470)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 248 (470)
.+.. ..-.+|..|...|.+.+.+++|.++++.|.+. ..-....|...+..+.+..+-+.|..++.++...-+
T Consensus 1524 cqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP----- 1595 (1710)
T KOG1070|consen 1524 CQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP----- 1595 (1710)
T ss_pred HHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc-----
Confidence 5532 12234555556666666666666666665543 123445555555555555555566666555554321
Q ss_pred cCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 036577 249 CEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQP 321 (470)
Q Consensus 249 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 321 (470)
-........-.+..-.+.|+.+.+..+|+...... +--...|+..++.-.++|+.+.+..+|++....++.|
T Consensus 1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 00122333334444445555555555555554431 2234455555555555555555555555555554443
No 102
>PLN02789 farnesyltranstransferase
Probab=98.92 E-value=3.1e-06 Score=75.77 Aligned_cols=219 Identities=13% Similarity=0.031 Sum_probs=100.5
Q ss_pred cCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 036577 225 TGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEG-FVDKAKELFLKMKDENINPNVVTYNSLIHGFCYAND 303 (470)
Q Consensus 225 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 303 (470)
.+..++|+.+..++.... +.+..+|+....++...| ++++++..++++..... .+..+|+.....+.+.|+
T Consensus 50 ~e~serAL~lt~~aI~ln-------P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-------PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-------chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCc
Confidence 344455555555555443 233344444444444444 34555555555544321 233344433333333333
Q ss_pred H--HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcC---CCH----
Q 036577 304 W--NEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLT---GRV---- 374 (470)
Q Consensus 304 ~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~---- 374 (470)
. ++++..++++.+.. +-+..+|+....++...|+++++++.++++++.++. |...|+.....+.+. |..
T Consensus 122 ~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 122 DAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccH
Confidence 2 34455555555443 334455555555555555555555555555555444 444444444333332 111
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----CChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC--------
Q 036577 375 NRAKELFVSMESNRCMHDVFSYSILINGYCKN----KEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIH-------- 442 (470)
Q Consensus 375 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-------- 442 (470)
++...+...++... +-|...|+-+...+... ++..+|.+.+.+..+.++. +......|++.|+...
T Consensus 200 e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~~~~~~~~~~~ 277 (320)
T PLN02789 200 DSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCEGLQPTAEFRD 277 (320)
T ss_pred HHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHhhhccchhhhh
Confidence 23444444444432 23555555555555442 2234455555554443211 3444555555555421
Q ss_pred ----------CHHHHHHHHHHHH
Q 036577 443 ----------QVERAFKLFDEMR 455 (470)
Q Consensus 443 ----------~~~~A~~~~~~m~ 455 (470)
..++|.++++.+.
T Consensus 278 ~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 278 TVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hhhccccccccHHHHHHHHHHHH
Confidence 3356777777773
No 103
>PLN02789 farnesyltranstransferase
Probab=98.91 E-value=3.5e-06 Score=75.45 Aligned_cols=131 Identities=15% Similarity=0.135 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc---CC----HHHHH
Q 036577 271 KAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKN---GK----MDEAS 343 (470)
Q Consensus 271 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~a~ 343 (470)
+++..++.+.+.+ +-|..+|+....++...|+++++++.++++++.+ +-+...|+.....+.+. |. .++.+
T Consensus 126 ~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 3444444444332 1244444444444444444555555554444443 22333333333333222 11 12344
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHcC----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 036577 344 RLLDLMIQIGVRPNAFVYNTLMDGFCLT----GRVNRAKELFVSMESNRCMHDVFSYSILINGYCK 405 (470)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 405 (470)
....+++...+. |...|+-+...+... +...+|...+.+....+ +.+......|++.|+.
T Consensus 204 ~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 204 KYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 444455544433 445555555555442 22344555555544432 2345555556665554
No 104
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.90 E-value=5.1e-05 Score=69.56 Aligned_cols=367 Identities=13% Similarity=0.134 Sum_probs=217.6
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCcchHH
Q 036577 84 TITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK-MGRVSPGF 162 (470)
Q Consensus 84 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~a~ 162 (470)
....++++..++++...-|. ++..|..-|....+.++++....+|.+-+.. ..+...|...+.--.+ .|+...+.
T Consensus 32 t~~~~~~R~~YEq~~~~FP~--s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl~YVR~~~~~~~~~r 107 (656)
T KOG1914|consen 32 TQPIDKVRETYEQLVNVFPS--SPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYLSYVRETKGKLFGYR 107 (656)
T ss_pred cCCHHHHHHHHHHHhccCCC--CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHHHHHHHHccCcchHH
Confidence 34788999999999887665 7888999999999999999999999887765 3456667666643332 23333322
Q ss_pred ----HHHHHHH-hCCCCC-CHHHHHHHHHHH---------HhcCCHHHHHHHHHHHHhcCCCCCcchHH------HHHHH
Q 036577 163 ----VVLGRIL-RSCFTP-DAVTFNSLIKGL---------CAESRIMEAAALFTKLKAFGCEPNVITYS------TLING 221 (470)
Q Consensus 163 ----~~~~~~~-~~~~~~-~~~~~~~l~~~~---------~~~g~~~~a~~~~~~~~~~g~~~~~~~~~------~l~~~ 221 (470)
+.|+-.+ +.|+.+ +-..|+..+..+ ..+.+++...++|+++...-..-=...|+ .=++.
T Consensus 108 ~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~ 187 (656)
T KOG1914|consen 108 EKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINI 187 (656)
T ss_pred HHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHH
Confidence 2233322 234332 234455555443 34445667777777776421100011111 10100
Q ss_pred H-------HhcCChHHHHHHHHHHHhcCCCC--------------------------------CcccC-CC------Hhh
Q 036577 222 L-------CRTGHTIVALNLFEEMANGNGEI--------------------------------GVVCE-PN------TVT 255 (470)
Q Consensus 222 ~-------~~~g~~~~a~~~~~~~~~~~~~~--------------------------------~~~~~-~~------~~~ 255 (470)
. -+...+-.|.++++++...-... ++... -+ ..+
T Consensus 188 ~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~ya 267 (656)
T KOG1914|consen 188 ITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYA 267 (656)
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHH
Confidence 0 01122333444444332211100 00000 00 001
Q ss_pred HHHHH---------------------HHHHhCCC-------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---ccCCH
Q 036577 256 YTTII---------------------DGLCKEGF-------VDKAKELFLKMKDENINPNVVTYNSLIHGFC---YANDW 304 (470)
Q Consensus 256 ~~~l~---------------------~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---~~~~~ 304 (470)
|.-.+ +.+...|+ -+++..+++.....-...+..+|..+...-- +.+..
T Consensus 268 yeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~ 347 (656)
T KOG1914|consen 268 YEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKE 347 (656)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchh
Confidence 11111 11222333 3445555555444322223333333332211 11235
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHH
Q 036577 305 NEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRP-NAFVYNTLMDGFCLTGRVNRAKELFVS 383 (470)
Q Consensus 305 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 383 (470)
+.....+++.......--..+|...|..-.+..-+..|..+|.++.+.+..+ ++.+.++++..++ .++.+-|.++|+.
T Consensus 348 ~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeL 426 (656)
T KOG1914|consen 348 KKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFEL 426 (656)
T ss_pred hhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHH
Confidence 5566666666554322233567788888888899999999999999987776 7788889998887 7899999999987
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH--hHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 384 MESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDV--VIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 384 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
-..+- ..+..--...++-+...++-..|..+|++.+..++.|+. .+|..++.--..-|+...+.++-+++..
T Consensus 427 GLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 427 GLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 65542 234444567788888999999999999999988666654 5999999999999999999999888764
No 105
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.88 E-value=0.00011 Score=71.54 Aligned_cols=226 Identities=15% Similarity=0.169 Sum_probs=154.7
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchH
Q 036577 82 ITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPG 161 (470)
Q Consensus 82 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 161 (470)
+..+++..|++..+.+++..|..+...++.++ .+.+.|+.++|..+++.....+. .|..|...+-.+|.+.|+.++|
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaL--sl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKAL--SLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHH--HHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHH
Confidence 45678999999999999999873333344333 35689999999999998877763 4888999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC----------hHHH
Q 036577 162 FVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGH----------TIVA 231 (470)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~----------~~~a 231 (470)
..+|++..+. -|+......+..+|.+.+.+.+-.++--+|.+. .+-+...+=++++...+.-. ..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 9999999986 466888888889999988876655444444332 33445555555555443221 2346
Q ss_pred HHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 036577 232 LNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFL-KMKDENINPNVVTYNSLIHGFCYANDWNEAKCL 310 (470)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 310 (470)
.+.++.+.+.++. -.+..-.......+...|.+++|.+++. ...+.-...+...-+.-+..+...++|.+..++
T Consensus 174 ~~m~~~~l~~~gk-----~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l 248 (932)
T KOG2053|consen 174 EKMVQKLLEKKGK-----IESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFEL 248 (932)
T ss_pred HHHHHHHhccCCc-----cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHH
Confidence 6677777665521 1222223334455667888999999984 333333333444445566777777888887777
Q ss_pred HHHHHHCC
Q 036577 311 LIEMMDQG 318 (470)
Q Consensus 311 ~~~~~~~~ 318 (470)
-.++...|
T Consensus 249 ~~~Ll~k~ 256 (932)
T KOG2053|consen 249 SSRLLEKG 256 (932)
T ss_pred HHHHHHhC
Confidence 77777665
No 106
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.87 E-value=3.6e-06 Score=84.94 Aligned_cols=234 Identities=12% Similarity=0.039 Sum_probs=134.6
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHH
Q 036577 211 NVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVT 290 (470)
Q Consensus 211 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 290 (470)
+...|...|......++.++|.++.+++...-.... -..-...|.++++.-..-|.-+...++|+++.+. ......
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~RE--eeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFRE--EEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcch--hHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 345566666666666666666666666554321000 0111234555555555556666666666666653 123345
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHhHHHHHHHHHH
Q 036577 291 YNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVR-PNAFVYNTLMDGFC 369 (470)
Q Consensus 291 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 369 (470)
|..|...|.+.+.+++|.++++.|.+.- .-....|...+..+.+..+-+.|..++.++.+.-++ -......-.+..-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 6666666666667777777776666542 234456666666666666666777777666654222 12333444455556
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHh--HHHHHHHHHHhcCCHHHH
Q 036577 370 LTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVV--IYNTLFIGLFEIHQVERA 447 (470)
Q Consensus 370 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A 447 (470)
+.|+.+.++.+|+...... +--...|+..++.-.++|+.+.+..+|++.+..++.|--. .|...+.---.+|+-+.+
T Consensus 1612 k~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred hcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 6777777777777766653 3356667777777777777777777777777766655432 445555444455665444
Q ss_pred HHH
Q 036577 448 FKL 450 (470)
Q Consensus 448 ~~~ 450 (470)
..+
T Consensus 1691 E~V 1693 (1710)
T KOG1070|consen 1691 EYV 1693 (1710)
T ss_pred HHH
Confidence 333
No 107
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.86 E-value=2.9e-07 Score=86.66 Aligned_cols=221 Identities=17% Similarity=0.110 Sum_probs=142.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCH
Q 036577 174 TPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNT 253 (470)
Q Consensus 174 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 253 (470)
+|--..-..+...+...|-..+|..+|+++.. |...+.+|+..|+..+|..+..+..+ . +|+.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~le-k-------~~d~ 457 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELE-K-------DPDP 457 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhc-C-------CCcc
Confidence 34444445566667777777777777776643 45566677777777777777776665 2 5677
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 036577 254 VTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDEL 333 (470)
Q Consensus 254 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 333 (470)
..|..+++......-+++|.++.+....+ .-..+.....+.++++++.+.|+.-.+.+ +....+|-....+.
T Consensus 458 ~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~A 529 (777)
T KOG1128|consen 458 RLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAA 529 (777)
T ss_pred hhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHH
Confidence 77777777666666667777776654332 11111222234567777777777666554 44556666666677
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 036577 334 CKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGAL 413 (470)
Q Consensus 334 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 413 (470)
.+.++++.|.+.|.......+. +...||.+-.+|.+.|+-.+|...+++..+.+ .-+...|...+....+.|.+++|+
T Consensus 530 Lqlek~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 530 LQLEKEQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred HHHhhhHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHH
Confidence 7777777777777776665433 45667777777777777777777777777665 335556666666677777777777
Q ss_pred HHHHHHHH
Q 036577 414 SLYSEMLS 421 (470)
Q Consensus 414 ~~~~~~~~ 421 (470)
+.+.++.+
T Consensus 608 ~A~~rll~ 615 (777)
T KOG1128|consen 608 KAYHRLLD 615 (777)
T ss_pred HHHHHHHH
Confidence 77776654
No 108
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.81 E-value=2.4e-06 Score=83.38 Aligned_cols=185 Identities=10% Similarity=-0.003 Sum_probs=128.6
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHH
Q 036577 85 ITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVV 164 (470)
Q Consensus 85 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 164 (470)
.+...|+..|-+.++.++. -...|..|...|+...+...|...|++..+.+ ..+..........|++..+++.|..+
T Consensus 472 K~~~~al~ali~alrld~~--~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVS--LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHH
Confidence 3577888888888887765 56788899999988888899999999988876 56777888888999999999998887
Q ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 036577 165 LGRILRSCFTPD--AVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242 (470)
Q Consensus 165 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 242 (470)
.-..-+.. +.- ...|....-.|.+.++...|+.-|+...... |.|...|..++.+|.+.|++..|+++|.++..-+
T Consensus 549 ~l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 549 CLRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred HHHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 33332211 111 1223334445667778888888888777643 3467778888888888888888888888876644
Q ss_pred CCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 036577 243 GEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKD 281 (470)
Q Consensus 243 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 281 (470)
+.+...-.-..-.-+..|.+.+|+..+..+..
T Consensus 627 -------P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 627 -------PLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred -------cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 22323222333344556777777777666543
No 109
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.81 E-value=1.7e-06 Score=75.04 Aligned_cols=189 Identities=10% Similarity=0.018 Sum_probs=126.5
Q ss_pred CCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC-HhH
Q 036577 250 EPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENIN-P-NVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQ-PN-VVT 325 (470)
Q Consensus 250 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~ 325 (470)
......+..++..+...|++++|...|+++...... | ....+..+..++.+.|++++|...++++.+.... +. ...
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 556677788888888899999999999888775311 1 1245677788888889999999999988876311 11 113
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 036577 326 FNVIMDELCKN--------GKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYS 397 (470)
Q Consensus 326 ~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 397 (470)
+..+..++.+. |+.++|.+.++.+.+..+. +...+..+..... ... .. .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~--------~~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RL--------AGKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HH--------HHHHH
Confidence 44555555554 6778888888888776433 2222222211110 000 00 01122
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCC-CC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036577 398 ILINGYCKNKEIEGALSLYSEMLSKGI-KP-DVVIYNTLFIGLFEIHQVERAFKLFDEMRRD 457 (470)
Q Consensus 398 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (470)
.+...|.+.|++++|+..+++.++... .| ....+..+..++...|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 566778899999999999999987632 12 3468889999999999999999999888753
No 110
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.80 E-value=1.4e-06 Score=72.54 Aligned_cols=148 Identities=13% Similarity=0.150 Sum_probs=112.9
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCH
Q 036577 260 IDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKM 339 (470)
Q Consensus 260 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 339 (470)
+..|...|+++.+....+.+... . ..+...++.+++...++...+.. +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 45678888888875554332221 1 12223667788888888877765 67788888888999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHH-HcCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 036577 340 DEASRLLDLMIQIGVRPNAFVYNTLMDGF-CLTGR--VNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLY 416 (470)
Q Consensus 340 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 416 (470)
++|...+++..+..+. +...+..+..++ ...|+ .++|.+++++..+.+ +.+...+..+...+...|++++|+..|
T Consensus 90 ~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999888655 777888888764 66676 489999999988875 447888888888999999999999999
Q ss_pred HHHHHC
Q 036577 417 SEMLSK 422 (470)
Q Consensus 417 ~~~~~~ 422 (470)
+++++.
T Consensus 168 ~~aL~l 173 (198)
T PRK10370 168 QKVLDL 173 (198)
T ss_pred HHHHhh
Confidence 998875
No 111
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.78 E-value=2.3e-06 Score=71.11 Aligned_cols=158 Identities=15% Similarity=0.048 Sum_probs=83.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 036577 111 NILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAE 190 (470)
Q Consensus 111 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (470)
..+...+...|+-+....+.....-. .+.|......++....+.|++..|...+.+..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 33444444455555554444443221 13344444445555556666666666665555432 45555666666666666
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHH
Q 036577 191 SRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVD 270 (470)
Q Consensus 191 g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 270 (470)
|+++.|..-|.+..+.. +-+....+.+.-.+.-.|+.+.|..++....... ..|..+-..+.......|+++
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-------~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-------AADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-------CCchHHHHHHHHHHhhcCChH
Confidence 66666666555555431 2234455555555555566666666665555443 335555555555555566666
Q ss_pred HHHHHHHH
Q 036577 271 KAKELFLK 278 (470)
Q Consensus 271 ~a~~~~~~ 278 (470)
+|.++...
T Consensus 220 ~A~~i~~~ 227 (257)
T COG5010 220 EAEDIAVQ 227 (257)
T ss_pred HHHhhccc
Confidence 55555433
No 112
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.77 E-value=1e-05 Score=80.75 Aligned_cols=240 Identities=10% Similarity=0.058 Sum_probs=166.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHH
Q 036577 104 PPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSL 183 (470)
Q Consensus 104 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 183 (470)
|.+..+|..|+..+...+++++|.++.+...+.. +.....|-.+...+.+.++.+++..+ .+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 3578899999999999999999999999777653 33344454555566667765554433 33
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHH
Q 036577 184 IKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGL 263 (470)
Q Consensus 184 ~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 263 (470)
+.......++..+.-++..|.+.+ -+..++..+..+|-+.|+.++|..+++++.+.+ +.|+.+.|.+...|
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-------~~n~~aLNn~AY~~ 160 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-------RDNPEIVKKLATSY 160 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------cccHHHHHHHHHHH
Confidence 444444555555555556666643 455688889999999999999999999999887 67889999999999
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHH
Q 036577 264 CKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 343 (470)
Q Consensus 264 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 343 (470)
... +.++|.+++.+.... +...+++.++.++|.++.... +.+...+..+
T Consensus 161 ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i-------------- 209 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRI-------------- 209 (906)
T ss_pred HHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHH--------------
Confidence 999 999999999887664 666778888888888888763 2222222222
Q ss_pred HHHHHHHHc-CCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036577 344 RLLDLMIQI-GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYC 404 (470)
Q Consensus 344 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 404 (470)
.+.+... +..--..++-.+-..|...++++++..+++.+.+.. +-|.....-++.+|.
T Consensus 210 --~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 210 --ERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred --HHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 2222221 112233445556666777788888888888888764 336666666776665
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.76 E-value=3.3e-06 Score=70.25 Aligned_cols=156 Identities=13% Similarity=0.046 Sum_probs=79.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcC
Q 036577 292 NSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLT 371 (470)
Q Consensus 292 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 371 (470)
..+-..+...|+-+....+........ +.|.......+....+.|++.+|...+.+..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 334444445555555555444433221 3333444445555555555555555555555543 23555555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 036577 372 GRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLF 451 (470)
Q Consensus 372 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 451 (470)
|+++.|..-|.+..+.. +-+...++.+...|.-.|+.+.|..++......+.. |..+-..|..+....|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 55555555555555432 224444555555555555555555555555543222 4444445555555555555555543
No 114
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.76 E-value=9.5e-07 Score=73.57 Aligned_cols=127 Identities=13% Similarity=0.190 Sum_probs=108.9
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--cc
Q 036577 83 TTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF-CKMGR--VS 159 (470)
Q Consensus 83 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~--~~ 159 (470)
..++.+++...++..++.+|. +...|..+...|...|++++|+..|++..+.. +.+...+..+..++ ...|+ .+
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~--~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQ--NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcH
Confidence 466789999999999998887 99999999999999999999999999999876 66788888888864 67777 58
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcch
Q 036577 160 PGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVIT 214 (470)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~ 214 (470)
+|.+++++.++.. +.+..++..+...+...|++++|+..|+++.+.. +|+..-
T Consensus 128 ~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r 180 (198)
T PRK10370 128 QTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNR 180 (198)
T ss_pred HHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccH
Confidence 9999999999975 5577889999999999999999999999998764 444443
No 115
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.76 E-value=2.3e-06 Score=74.21 Aligned_cols=100 Identities=14% Similarity=0.051 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC--HHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDL---YTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD--AVTF 180 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~ 180 (470)
....+..++..+...|++++|...|+++.... +.+. .++..+..++...|++++|...++++.+...... ..++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 45555666666666666777766666665542 2121 3455566666666666667666666665421111 1133
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHhc
Q 036577 181 NSLIKGLCAE--------SRIMEAAALFTKLKAF 206 (470)
Q Consensus 181 ~~l~~~~~~~--------g~~~~a~~~~~~~~~~ 206 (470)
..+..++... |+.++|.+.|+++...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 4444444433 5566677777766654
No 116
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.75 E-value=2.1e-06 Score=84.69 Aligned_cols=168 Identities=11% Similarity=0.050 Sum_probs=135.2
Q ss_pred HHHHHHHHhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 036577 66 LEKFLRERFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTY 145 (470)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~ 145 (470)
+.+.+.+.+...+..+....++.+++.+ .+.++. ++.++-.|..+..+.|++++|..+++...+.. +.+....
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~ 123 (694)
T PRK15179 51 LLQQARQVLERHAAVHKPAAALPELLDY----VRRYPH--TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAF 123 (694)
T ss_pred HHHHHHHHHHHhhhhcchHhhHHHHHHH----HHhccc--cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHH
Confidence 4444555565665554444444444443 444454 78999999999999999999999999999874 5566788
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 036577 146 NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRT 225 (470)
Q Consensus 146 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 225 (470)
..+...+.+.+++++|+...++.++.. +.+......+..++.+.|++++|..+|+++... .+-+..++..+..++...
T Consensus 124 ~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~ 201 (694)
T PRK15179 124 ILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRR 201 (694)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHc
Confidence 889999999999999999999999875 556778888899999999999999999999974 334578899999999999
Q ss_pred CChHHHHHHHHHHHhcC
Q 036577 226 GHTIVALNLFEEMANGN 242 (470)
Q Consensus 226 g~~~~a~~~~~~~~~~~ 242 (470)
|+.++|...|++..+..
T Consensus 202 G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 202 GALWRARDVLQAGLDAI 218 (694)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999998775
No 117
>PF12854 PPR_1: PPR repeat
Probab=98.71 E-value=2.2e-08 Score=56.21 Aligned_cols=32 Identities=56% Similarity=0.911 Sum_probs=17.2
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036577 423 GIKPDVVIYNTLFIGLFEIHQVERAFKLFDEM 454 (470)
Q Consensus 423 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 454 (470)
|+.||..+|+.|+.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 118
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.70 E-value=4.3e-06 Score=81.64 Aligned_cols=369 Identities=13% Similarity=0.052 Sum_probs=208.4
Q ss_pred HHhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHH
Q 036577 72 ERFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTG-LFPDLYTYNILIN 150 (470)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~li~ 150 (470)
..|.+.|..++...+...|.+.|+.+.+.++. +..++......|+...+++.|..+.-..-+.. ...-...|....-
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat--daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT--DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch--hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 34455566666666889999999999998887 89999999999999999999999843322221 0011223444556
Q ss_pred HHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHH--HHHHHHhcCCh
Q 036577 151 CFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYST--LINGLCRTGHT 228 (470)
Q Consensus 151 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~--l~~~~~~~g~~ 228 (470)
.|.+.++...|..-|+..++.. +.|...|..++.+|.+.|++..|.++|.+.... .|+. .|.. ....-+..|.+
T Consensus 571 yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKY 646 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhH
Confidence 6778889999999999998875 568889999999999999999999999998764 3432 2222 22345678999
Q ss_pred HHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHH-------HHhCCCCCCHHHHHHHHHH----
Q 036577 229 IVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLK-------MKDENINPNVVTYNSLIHG---- 297 (470)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-------~~~~~~~~~~~~~~~li~~---- 297 (470)
.+|+..+................-..++-.+...+.-.|-..++...+++ ...+....+...|-.+-++
T Consensus 647 keald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f 726 (1238)
T KOG1127|consen 647 KEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIF 726 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHH
Confidence 99999888876543210000011122232222222223332333333322 2222111122222221111
Q ss_pred -------------------HHccCCH---H---HHHHHHHHHHHCCCCCCHhHHHHHHHHHHH----c----CCHHHHHH
Q 036577 298 -------------------FCYANDW---N---EAKCLLIEMMDQGVQPNVVTFNVIMDELCK----N----GKMDEASR 344 (470)
Q Consensus 298 -------------------~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~----g~~~~a~~ 344 (470)
.-..+.. + -+.+.+-.-.+ ...+..+|..++..|.+ . .+...|+.
T Consensus 727 ~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~ 804 (1238)
T KOG1127|consen 727 SQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIR 804 (1238)
T ss_pred HHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHH
Confidence 1111111 1 01111111111 12234555555554443 1 12346777
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 036577 345 LLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGI 424 (470)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 424 (470)
.+...++..-. +..+|+.|.-. ...|++.-|...|-.-.... +....+|..+...+.+..+++-|...|...+...+
T Consensus 805 c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP 881 (1238)
T KOG1127|consen 805 CCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDP 881 (1238)
T ss_pred HHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcCc
Confidence 77777766433 66677766655 55566666666665444432 33556666666666666677777776666654321
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 036577 425 KPDVVIYNTLFIGLFEIHQVERAFKLFD 452 (470)
Q Consensus 425 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 452 (470)
. |...|-.........|+.-++..+|.
T Consensus 882 ~-nl~~WlG~Ali~eavG~ii~~~~lfa 908 (1238)
T KOG1127|consen 882 L-NLVQWLGEALIPEAVGRIIERLILFA 908 (1238)
T ss_pred h-hhHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 1 33444433333334454444444443
No 119
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.70 E-value=0.00013 Score=67.07 Aligned_cols=361 Identities=13% Similarity=0.147 Sum_probs=210.0
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCC
Q 036577 95 DYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFT 174 (470)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 174 (470)
++-++.+|. |..+|+.|++-+..+ .++++.+.++++... .+-....|..-+..-....+++....+|.+.+.. .
T Consensus 10 ~~rie~nP~--di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--v 83 (656)
T KOG1914|consen 10 RERIEENPY--DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--V 83 (656)
T ss_pred HHHHhcCCc--cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--H
Confidence 555566776 999999999988766 999999999999876 3566778999999999999999999999998876 3
Q ss_pred CCHHHHHHHHHHHHh-cCCHHHH----HHHHHH-HHhcCCCCC-cchHHHHHHH---------HHhcCChHHHHHHHHHH
Q 036577 175 PDAVTFNSLIKGLCA-ESRIMEA----AALFTK-LKAFGCEPN-VITYSTLING---------LCRTGHTIVALNLFEEM 238 (470)
Q Consensus 175 ~~~~~~~~l~~~~~~-~g~~~~a----~~~~~~-~~~~g~~~~-~~~~~~l~~~---------~~~~g~~~~a~~~~~~~ 238 (470)
.+...|...+.--.+ .|+...+ .+.|+- +.+.|..+- ...|+..+.- |....+++...++|+++
T Consensus 84 LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqra 163 (656)
T KOG1914|consen 84 LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRA 163 (656)
T ss_pred hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHH
Confidence 456666665553332 2332222 222332 233443332 2234444432 33444667788888888
Q ss_pred HhcCCCCCcccCCCHhhHHHHHHHH-------HhCCCHHHHHHHHHHHHh--CCCCCCH---------------HHHHHH
Q 036577 239 ANGNGEIGVVCEPNTVTYTTIIDGL-------CKEGFVDKAKELFLKMKD--ENINPNV---------------VTYNSL 294 (470)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~g~~~~a~~~~~~~~~--~~~~~~~---------------~~~~~l 294 (470)
....-..-...-.|-..|..-|+.. -+...+-.|.++++++.. +|...+. ..|..+
T Consensus 164 l~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~ 243 (656)
T KOG1914|consen 164 LVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNW 243 (656)
T ss_pred hcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHH
Confidence 7533100000000111121111111 123345566666666543 1221111 112222
Q ss_pred HHH-------------------------------------------------HHccCC-------HHHHHHHHHHHHHCC
Q 036577 295 IHG-------------------------------------------------FCYAND-------WNEAKCLLIEMMDQG 318 (470)
Q Consensus 295 i~~-------------------------------------------------~~~~~~-------~~~a~~~~~~~~~~~ 318 (470)
|.- +...|+ -+++..+++.....-
T Consensus 244 I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l 323 (656)
T KOG1914|consen 244 IKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGL 323 (656)
T ss_pred HHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 211 111111 122333333322211
Q ss_pred CCCCHhHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHH
Q 036577 319 VQPNVVTFNVIMDELCKN---GKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMH-DVF 394 (470)
Q Consensus 319 ~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~ 394 (470)
..-+..+|..+.+.--.. ...+.....++++...-..--..+|..+++...+..-++.|+.+|.+..+.+..+ ++.
T Consensus 324 ~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVf 403 (656)
T KOG1914|consen 324 LKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVF 403 (656)
T ss_pred HHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhh
Confidence 111222222222211111 1244455555555544222233568888888889999999999999999887666 788
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 036577 395 SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADT 463 (470)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 463 (470)
.+++++.-|| .++.+-|.++|+--+.+ +..+..--...++-+...++-..|..+|++....++.||.
T Consensus 404 Va~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~k 470 (656)
T KOG1914|consen 404 VAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADK 470 (656)
T ss_pred HHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhh
Confidence 8888888766 57889999999987664 2223444456778888889999999999999987777663
No 120
>PF12854 PPR_1: PPR repeat
Probab=98.68 E-value=3.5e-08 Score=55.40 Aligned_cols=32 Identities=44% Similarity=0.943 Sum_probs=25.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 036577 388 RCMHDVFSYSILINGYCKNKEIEGALSLYSEM 419 (470)
Q Consensus 388 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (470)
|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56778888888888888888888888888776
No 121
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.67 E-value=1.7e-06 Score=68.13 Aligned_cols=108 Identities=8% Similarity=-0.065 Sum_probs=75.6
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 036577 309 CLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNR 388 (470)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 388 (470)
.++++..+. .|+ .+......+...|++++|...|.......+. +...|..+..++...|++++|...|++....+
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 445555544 233 3445666777777888888777777776543 66777777777777788888888887777654
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 389 CMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 389 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
+.+...+..+..++...|++++|+..|+..++.
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 447777777777777778888888887777754
No 122
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=9.4e-05 Score=72.79 Aligned_cols=188 Identities=18% Similarity=0.216 Sum_probs=120.4
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhC
Q 036577 187 LCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKE 266 (470)
Q Consensus 187 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 266 (470)
....+-+++|..+|++.. .+..+.+.++.- -+..+.|.++-++.. .+.+|+.+..+-.+.
T Consensus 1058 ai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n------------~p~vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN------------EPAVWSQLAKAQLQG 1117 (1666)
T ss_pred HhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC------------ChHHHHHHHHHHHhc
Confidence 334444555555555542 233444444432 344444544443332 346788888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 036577 267 GFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLL 346 (470)
Q Consensus 267 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 346 (470)
|.+.+|.+.|-+. .|+..|..+++...+.|.|++-.+.+....+..-.|.. =+.++-+|++.++..+..+++
T Consensus 1118 ~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1118 GLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred CchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh
Confidence 8888888777433 26677888888888888888888888777776555544 356788888888877655543
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 036577 347 DLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSE 418 (470)
Q Consensus 347 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 418 (470)
..||......+.+-|...|.++.|.-+|..+ ..|..|...+...|+++.|...-++
T Consensus 1190 -------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1190 -------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred -------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 2456666677777777777777777666533 3466666666666776666654443
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.66 E-value=2.5e-05 Score=77.24 Aligned_cols=182 Identities=6% Similarity=0.009 Sum_probs=124.7
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC
Q 036577 208 CEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN 287 (470)
Q Consensus 208 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 287 (470)
.+.+...+..|.....+.|..++|+.+++...+.. +.+......++.++.+.+++++|+..++...... +-+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-------Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~ 153 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-------PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSS 153 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCC
Confidence 34567778888888888888888888888888765 5566777788888888888888888888888764 335
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 036577 288 VVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDG 367 (470)
Q Consensus 288 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 367 (470)
......+..++.+.|++++|.++|++....+ +-+..++..+..++-..|+.++|...|+...+.. .+....|+.++
T Consensus 154 ~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~-- 229 (694)
T PRK15179 154 AREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL-- 229 (694)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH--
Confidence 6666777777888888888888888888743 4456778888888888888888888888887763 22444444433
Q ss_pred HHcCCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHH
Q 036577 368 FCLTGRVNRAKELFVSMESNR----CMHDVFSYSILINGYCK 405 (470)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~~~~ 405 (470)
+++..-...++++.-.+ .+..+.+...++.-|.+
T Consensus 230 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 230 ----VDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred ----HHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhh
Confidence 33344445555543322 22233444445544444
No 124
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=2.1e-05 Score=65.61 Aligned_cols=106 Identities=15% Similarity=0.121 Sum_probs=45.5
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCC
Q 036577 298 FCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCK----NGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGR 373 (470)
Q Consensus 298 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 373 (470)
+.+..+.+-|...+++|.+.. +..+.+.|..++.+ .+.+.+|.-+|++|-++ ..|+..+.+..+.++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 334444444444444444321 22333333333332 22344455555554442 23444444555555555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 036577 374 VNRAKELFVSMESNRCMHDVFSYSILINGYCKNKE 408 (470)
Q Consensus 374 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 408 (470)
+++|..+++....+. ..++.+...++.+-...|.
T Consensus 223 ~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 223 YEEAESLLEEALDKD-AKDPETLANLIVLALHLGK 256 (299)
T ss_pred HHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCC
Confidence 555555555544442 2234444444443333443
No 125
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.63 E-value=2e-05 Score=78.83 Aligned_cols=154 Identities=11% Similarity=0.063 Sum_probs=92.7
Q ss_pred CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 036577 252 NTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMD 331 (470)
Q Consensus 252 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 331 (470)
+...+..+..+|-+.|+.++|..+++++.+.. +-|..+.|.+...|... +.++|..++.+....
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-------------- 178 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-------------- 178 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------
Confidence 33456666666666666666666666666654 34566666666666666 666666666555432
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhH
Q 036577 332 ELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEG 411 (470)
Q Consensus 332 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 411 (470)
+...+++..+.++|.++....+. +...+..+.+.....- +..--..++-.+-..|-..+++++
T Consensus 179 -~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~---------------~~~~~~~~~~~l~~~y~~~~~~~~ 241 (906)
T PRK14720 179 -FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHR---------------EFTRLVGLLEDLYEPYKALEDWDE 241 (906)
T ss_pred -HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhh---------------ccchhHHHHHHHHHHHhhhhhhhH
Confidence 44455666666666666665332 2323322222222111 112234456666777888999999
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 036577 412 ALSLYSEMLSKGIKPDVVIYNTLFIGLF 439 (470)
Q Consensus 412 A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 439 (470)
++.+++..++.... |.....-++..|.
T Consensus 242 ~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 242 VIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 99999999976443 5556667777665
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.62 E-value=7.5e-05 Score=67.84 Aligned_cols=117 Identities=18% Similarity=0.175 Sum_probs=70.1
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHH
Q 036577 298 FCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRA 377 (470)
Q Consensus 298 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 377 (470)
+...|++++|+..+..+.+.. +.|+..+......+.+.++.++|.+.++.+....+. .....-.+.+++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHH
Confidence 445666666666666665552 334444455556666667777777777666665322 144455566666666777766
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 036577 378 KELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYS 417 (470)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 417 (470)
+.+++...... +.|...|..|.++|...|+..++..-..
T Consensus 394 i~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A 432 (484)
T COG4783 394 IRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA 432 (484)
T ss_pred HHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH
Confidence 66666665543 4466666666666666666555554433
No 127
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.60 E-value=7.5e-06 Score=64.49 Aligned_cols=121 Identities=10% Similarity=-0.016 Sum_probs=90.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 036577 274 ELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIG 353 (470)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 353 (470)
.+++...+. .|+ .+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+...+.+
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 445555554 233 35556777888899999999988888775 5577788888888889999999999999988876
Q ss_pred CCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036577 354 VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILIN 401 (470)
Q Consensus 354 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 401 (470)
+. +...+..+..++...|+.++|...|+..++.. +.+...|.....
T Consensus 89 p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~~~~ 134 (144)
T PRK15359 89 AS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-YADASWSEIRQN 134 (144)
T ss_pred CC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 54 77888888888888999999999998888764 334555544433
No 128
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=8.5e-05 Score=62.07 Aligned_cols=249 Identities=14% Similarity=0.092 Sum_probs=161.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHH
Q 036577 185 KGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLC 264 (470)
Q Consensus 185 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 264 (470)
+-+.-.|.+..++..-...... +.+...-..+-++|...|.+..... ++.... .|.......+.....
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-------~~~lqAvr~~a~~~~ 83 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-------ATPLQAVRLLAEYLE 83 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-------CChHHHHHHHHHHhh
Confidence 3344467777766655554432 1334444455667777776544332 222111 233344444444444
Q ss_pred hCCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHH
Q 036577 265 KEGFVDKAK-ELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 343 (470)
Q Consensus 265 ~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 343 (470)
.-++.+.-. ++.+.+.......+......-...|+..|++++|++...... +......=+..+.+..+.+-|.
T Consensus 84 ~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~ 157 (299)
T KOG3081|consen 84 LESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAE 157 (299)
T ss_pred CcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHH
Confidence 444444433 344445444333343444444567889999999999887622 2333333456678888999999
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 036577 344 RLLDLMIQIGVRPNAFVYNTLMDGFCL----TGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEM 419 (470)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (470)
+.++.|.+.. +..|.+-|..++.+ .+.+.+|.-+|++|.++ .+|+..+.+....++...|++++|..++++.
T Consensus 158 ~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea 233 (299)
T KOG3081|consen 158 KELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEA 233 (299)
T ss_pred HHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHH
Confidence 9999998753 56777777777653 45689999999999875 4889999999999999999999999999999
Q ss_pred HHCCCCCCHhHHHHHHHHHHhcCCHHH-HHHHHHHHHH
Q 036577 420 LSKGIKPDVVIYNTLFIGLFEIHQVER-AFKLFDEMRR 456 (470)
Q Consensus 420 ~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~ 456 (470)
+.+..+ ++.+...++..-...|...+ ..+.+.++..
T Consensus 234 L~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 234 LDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 987555 66677777766666676544 4555666654
No 129
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.58 E-value=3.6e-06 Score=65.87 Aligned_cols=117 Identities=14% Similarity=0.067 Sum_probs=93.8
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036577 93 IFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSC 172 (470)
Q Consensus 93 ~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 172 (470)
.|+.++...|. +......+...+.+.|++++|.+.|+.+...+ +.+...+..+..++...|++++|..+++...+.+
T Consensus 5 ~~~~~l~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLDSE--QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCChh--hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56667776665 56667788888889999999999999988765 5677888888999999999999999999888764
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchH
Q 036577 173 FTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITY 215 (470)
Q Consensus 173 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 215 (470)
+.+...+..+..+|...|++++|.+.|++..+.. |+...+
T Consensus 82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~ 121 (135)
T TIGR02552 82 -PDDPRPYFHAAECLLALGEPESALKALDLAIEIC--GENPEY 121 (135)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--cccchH
Confidence 5567778888889999999999999998888753 554443
No 130
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.55 E-value=0.00027 Score=67.41 Aligned_cols=109 Identities=21% Similarity=0.259 Sum_probs=72.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q 036577 330 MDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEI 409 (470)
Q Consensus 330 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 409 (470)
+.+......+.+|+.+++.+...+. -...|..+.+.|+..|+++.|+++|-+.- .++-.|..|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 3344556677777777777766533 23446677788888888888888875432 345567788888888
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 036577 410 EGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLF 451 (470)
Q Consensus 410 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 451 (470)
+.|.++-++.. |.......|..-..-+-++|++.+|.+++
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 88888766654 44444555655555566677776666544
No 131
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=0.00031 Score=69.35 Aligned_cols=305 Identities=15% Similarity=0.148 Sum_probs=177.3
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHH
Q 036577 85 ITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVV 164 (470)
Q Consensus 85 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 164 (470)
+-+++|..+|.... .+..+.+.|+.-. +..++|.+.-++.. .+..|..+..+-.+.|.+.+|.+-
T Consensus 1062 ~LyEEAF~ifkkf~------~n~~A~~VLie~i---~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKFD------MNVSAIQVLIENI---GSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred hHHHHHHHHHHHhc------ccHHHHHHHHHHh---hhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHH
Confidence 34566666665542 2444455554432 45555555444332 345677777777777777777665
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 036577 165 LGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGE 244 (470)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 244 (470)
|-+ ..|+..|.-+++...+.|.+++-.+.+....+..-+|. .-..++-+|++.++..+..+++
T Consensus 1127 yik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi--------- 1189 (1666)
T KOG0985|consen 1127 YIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFI--------- 1189 (1666)
T ss_pred HHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHh---------
Confidence 543 23566677777777777777777777766665543333 3346677777777766554432
Q ss_pred CCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHh
Q 036577 245 IGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVV 324 (470)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 324 (470)
..||......+.+-|...|.++.|.-+|.. +.-|..|...+...|++..|.+.-++ ..+..
T Consensus 1190 ----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRK------Ans~k 1250 (1666)
T KOG0985|consen 1190 ----AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARK------ANSTK 1250 (1666)
T ss_pred ----cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhh------ccchh
Confidence 245666666777777777777777766643 33466677777777777777665443 23566
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036577 325 TFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYC 404 (470)
Q Consensus 325 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 404 (470)
+|-.+-.+|...+.+..| +|-..++-....-...++..|-..|-+++.+.+++...... ......|+.|.-.|.
T Consensus 1251 tWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1251 TWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYS 1324 (1666)
T ss_pred HHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHH
Confidence 777777777766555433 22222233344556678888888888888888877654321 124455666666666
Q ss_pred HcCChhHHHHHHHHHHHC-CCC------CCHhHHHHHHHHHHhcCCHHHH
Q 036577 405 KNKEIEGALSLYSEMLSK-GIK------PDVVIYNTLFIGLFEIHQVERA 447 (470)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~-~~~------p~~~~~~~l~~~~~~~g~~~~A 447 (470)
+- ++++..+.++-.-.+ +++ .....|..+.-.|.+-..++.|
T Consensus 1325 ky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1325 KY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred hc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 54 344444433332211 110 1234566666666555555554
No 132
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.52 E-value=7.1e-05 Score=71.16 Aligned_cols=109 Identities=20% Similarity=0.322 Sum_probs=60.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036577 219 INGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGF 298 (470)
Q Consensus 219 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 298 (470)
+.+......+.+|+.+++.+..+. .-...|..+.+-|...|+++.|.++|-+.- .++-.|.+|
T Consensus 739 ieaai~akew~kai~ildniqdqk--------~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my 801 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--------TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMY 801 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--------cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHH
Confidence 344455666677777766665443 223345556666677777777776664321 234456667
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 036577 299 CYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLL 346 (470)
Q Consensus 299 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 346 (470)
.+.|+|++|.++-++.... ......|-+-..-.-.+|++.+|.+++
T Consensus 802 ~k~~kw~da~kla~e~~~~--e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 802 GKAGKWEDAFKLAEECHGP--EATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred hccccHHHHHHHHHHhcCc--hhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 7777777776665554321 223334444444455555555555544
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=0.00015 Score=60.19 Aligned_cols=164 Identities=14% Similarity=0.120 Sum_probs=97.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHH
Q 036577 180 FNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTI 259 (470)
Q Consensus 180 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 259 (470)
|..++-+....|+.+.|..+++++... ++-+..+-..-.-.+-..|++++|+++++.+.+.+ +.|.+++-.-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-------pt~~v~~KRK 126 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-------PTDTVIRKRK 126 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-------cchhHHHHHH
Confidence 445555566677777777777776654 22222222222223344677777777777777665 5566666666
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc---
Q 036577 260 IDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKN--- 336 (470)
Q Consensus 260 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 336 (470)
+...-..|+--+|++-+.+..+. +..|...|.-+...|...|++++|.-.+++++-.. |.++..+..+...+.-.
T Consensus 127 lAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~ 204 (289)
T KOG3060|consen 127 LAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGA 204 (289)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhH
Confidence 66666666666666666666554 44567777777777777777777777777776553 33444444444443322
Q ss_pred CCHHHHHHHHHHHHHcC
Q 036577 337 GKMDEASRLLDLMIQIG 353 (470)
Q Consensus 337 g~~~~a~~~~~~~~~~~ 353 (470)
.+.+.+.+.|.+.++..
T Consensus 205 eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 205 ENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 24555666666666653
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.50 E-value=1.2e-05 Score=72.90 Aligned_cols=111 Identities=14% Similarity=0.111 Sum_probs=52.4
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCcchHHH
Q 036577 85 ITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPD-LYTYNILINCFCKMGRVSPGFV 163 (470)
Q Consensus 85 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~ 163 (470)
|++++|++.++.++...|. |+..+......+.+.++.++|.+.++++... .|+ ....-.+.+++.+.|++.+|..
T Consensus 320 ~~~d~A~~~l~~L~~~~P~--N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 320 GQYDEALKLLQPLIAAQPD--NPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred cccchHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHH
Confidence 3444555555554444443 4444444445555555555555555555443 222 3333444445555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036577 164 VLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALF 200 (470)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 200 (470)
++++..... +.|...|..|.++|...|+..++....
T Consensus 396 ~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 396 ILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 554444332 334445555555555555544444433
No 135
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.49 E-value=0.00012 Score=70.44 Aligned_cols=240 Identities=15% Similarity=0.099 Sum_probs=158.3
Q ss_pred CHHHHHHHHH--HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC-C-------C-C
Q 036577 106 PVSSFNILFG--CLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS-C-------F-T 174 (470)
Q Consensus 106 ~~~~~~~l~~--~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~-------~-~ 174 (470)
|..+-..++. .|...|+.+.|.+-.+-+.. ...|..+...|.+..+++-|.-.+..|... | . .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 5556666654 46678999999877766543 468999999999999888887776666431 1 1 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHh
Q 036577 175 PDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTV 254 (470)
Q Consensus 175 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 254 (470)
++ ..-.-..-.....|.+++|+.+|.+-+.. ..|=..|...|.+++|.++-+.-.... -..
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---------Lr~ 859 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---------LRN 859 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---------hhh
Confidence 21 22222333445689999999999998863 344556777999999998866433221 234
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhCC-------------------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036577 255 TYTTIIDGLCKEGFVDKAKELFLKMKDEN-------------------INPNVVTYNSLIHGFCYANDWNEAKCLLIEMM 315 (470)
Q Consensus 255 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 315 (470)
||.....-+...++.+.|++.|++..... -..|...|..-....-..|+.+.|+.+|....
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 66667777777888898888887643210 01133334444444555666777766665543
Q ss_pred HCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 036577 316 DQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSME 385 (470)
Q Consensus 316 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (470)
-|-+++...|-.|+.++|-++-++-. |....-.|.+.|-..|++.+|..+|.+..
T Consensus 940 ---------D~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 940 ---------DYFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ---------hhhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 24556667777788888877665532 44555568888888888888888887654
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.48 E-value=1.1e-05 Score=63.14 Aligned_cols=97 Identities=16% Similarity=0.119 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036577 324 VTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGY 403 (470)
Q Consensus 324 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (470)
.....+...+...|++++|...++.+...+.. +...+..+...+...|++++|..+++.....+ +.+...+..+..++
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 33444555566666666666666666555432 55556666666666666666666666655543 33555555566666
Q ss_pred HHcCChhHHHHHHHHHHHC
Q 036577 404 CKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~ 422 (470)
...|++++|...|++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666643
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=0.00068 Score=56.41 Aligned_cols=128 Identities=13% Similarity=-0.001 Sum_probs=55.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 036577 111 NILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAE 190 (470)
Q Consensus 111 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (470)
..++-+....|+.+.|...++.+..+- +.+..+-..-.-.+-..|++++|.++++.+++.. +.|..++-.-+...-..
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 333444444455555555555544431 2122221111222333445555555555555443 33344444444444444
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 036577 191 SRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241 (470)
Q Consensus 191 g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 241 (470)
|+--+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-.
T Consensus 134 GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred CCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 4444444444444332 2334455555555555555555555555555443
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.28 E-value=8.5e-05 Score=58.75 Aligned_cols=126 Identities=11% Similarity=0.045 Sum_probs=70.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 036577 326 FNVIMDELCKNGKMDEASRLLDLMIQIGVRPN--AFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHD--VFSYSILIN 401 (470)
Q Consensus 326 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~ 401 (470)
|..++..+ ..++...+...++.+.+....-. ....-.+...+...|++++|...|+.+......++ ......+..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33444443 35666666666666666533211 12223344566667777777777777766542221 123344566
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036577 402 GYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEM 454 (470)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 454 (470)
.+...|++++|+..++..... ......+....+.+.+.|++++|...|++.
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 666777777777777553322 223345555667777777777777777653
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.27 E-value=6.2e-05 Score=68.92 Aligned_cols=126 Identities=18% Similarity=0.174 Sum_probs=86.0
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 036577 254 VTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDEL 333 (470)
Q Consensus 254 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 333 (470)
.....++..+...++++.|.++++++.+.. |+ ....++..+...++..+|.+++++..+.. +-+...+..-...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344555666666777888888888877763 44 33446666767777777777777777553 44555566666667
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 036577 334 CKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSME 385 (470)
Q Consensus 334 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (470)
.+.++++.|..+.+++.+..+. +..+|..|..+|.+.|+++.|...++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7777778888888777776432 45677777888888888888777766554
No 140
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.26 E-value=0.0058 Score=60.05 Aligned_cols=225 Identities=13% Similarity=0.137 Sum_probs=156.1
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 036577 118 AKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINC--FCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIME 195 (470)
Q Consensus 118 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 195 (470)
...+++..|+....++.+. .|+. .|...+.+ +.+.|+.++|..+++.....+.. |..+...+-.+|.+.++.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 4568999999999998876 3544 23333333 56899999999999887766533 88899999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCC-------
Q 036577 196 AAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGF------- 268 (470)
Q Consensus 196 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------- 268 (470)
|..+|++.... .|+......+..+|.+.+++.+-.+.--++-+. .+.+...+=++++.+...-.
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-------~pk~~yyfWsV~Slilqs~~~~~~~~~ 166 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-------FPKRAYYFWSVISLILQSIFSENELLD 166 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCcccchHHHHHHHHHHhccCCccccc
Confidence 99999999864 477777888888999988887644444344332 24455666666666554321
Q ss_pred ---HHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHH-HHHHCCCCCCHhHHHHHHHHHHHcCCHHHHH
Q 036577 269 ---VDKAKELFLKMKDEN-INPNVVTYNSLIHGFCYANDWNEAKCLLI-EMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 343 (470)
Q Consensus 269 ---~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 343 (470)
..-|.+.++.+.+.+ .-.+..-...-.......|++++|.+++. ...+.-..-+...-+.-+..+...+++.+..
T Consensus 167 ~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~ 246 (932)
T KOG2053|consen 167 PILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELF 246 (932)
T ss_pred chhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHH
Confidence 234666777776653 22222222233344567889999999994 3333333334445556677888899999999
Q ss_pred HHHHHHHHcCCC
Q 036577 344 RLLDLMIQIGVR 355 (470)
Q Consensus 344 ~~~~~~~~~~~~ 355 (470)
++-.++...|..
T Consensus 247 ~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 247 ELSSRLLEKGND 258 (932)
T ss_pred HHHHHHHHhCCc
Confidence 999999988644
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.26 E-value=9.5e-05 Score=58.47 Aligned_cols=125 Identities=14% Similarity=0.181 Sum_probs=77.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--hHHHHHH
Q 036577 291 YNSLIHGFCYANDWNEAKCLLIEMMDQGVQPN---VVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNA--FVYNTLM 365 (470)
Q Consensus 291 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~ 365 (470)
|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+.+......++. .....+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 34444444 3677777777777776653 222 122333445677777888888888877776533321 2344466
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 036577 366 DGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEM 419 (470)
Q Consensus 366 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (470)
..+...|++++|...++..... ......+....+.|.+.|++++|...|+..
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7777778888888777654332 234556667777788888888888777654
No 142
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.24 E-value=2.2e-06 Score=48.93 Aligned_cols=33 Identities=45% Similarity=0.707 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 036577 430 IYNTLFIGLFEIHQVERAFKLFDEMRRDGVAAD 462 (470)
Q Consensus 430 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 462 (470)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.21 E-value=8.5e-05 Score=68.07 Aligned_cols=123 Identities=16% Similarity=0.150 Sum_probs=67.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc
Q 036577 291 YNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCL 370 (470)
Q Consensus 291 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 370 (470)
...|+..+...++++.|..+++++.+.. |+. ...++..+...++..+|.+++.+.++.... +...+..-...+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 3344455555566666666666666552 332 233455555555666666666666554322 45555555555566
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 036577 371 TGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEM 419 (470)
Q Consensus 371 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (470)
.++.+.|..+.+++.... +-+..+|..|..+|...|++++|+..++.+
T Consensus 247 k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred cCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 666666666666655542 224446666666666666666666555544
No 144
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=0.0011 Score=59.10 Aligned_cols=92 Identities=13% Similarity=0.034 Sum_probs=61.5
Q ss_pred HHHhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036577 71 RERFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILIN 150 (470)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 150 (470)
++...-.+....+..++.+|+..+..+....|. ++..|..-+..+...|++++|.--.+.-.+.. +-........-+
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd--~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~ 125 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPD--NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQ 125 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCcc--chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhh
Confidence 344455566677788999999999999999887 78888888888889999999887776655442 112223333444
Q ss_pred HHHhcCCcchHHHHH
Q 036577 151 CFCKMGRVSPGFVVL 165 (470)
Q Consensus 151 ~~~~~g~~~~a~~~~ 165 (470)
++...++..+|.+.+
T Consensus 126 c~~a~~~~i~A~~~~ 140 (486)
T KOG0550|consen 126 CHLALSDLIEAEEKL 140 (486)
T ss_pred hhhhhHHHHHHHHHh
Confidence 444444444444433
No 145
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.15 E-value=5.1e-06 Score=46.95 Aligned_cols=32 Identities=34% Similarity=0.579 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 036577 430 IYNTLFIGLFEIHQVERAFKLFDEMRRDGVAA 461 (470)
Q Consensus 430 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 461 (470)
+|+.++.+|.+.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 55666666666666666666666666666555
No 146
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.14 E-value=4.9e-06 Score=47.40 Aligned_cols=33 Identities=52% Similarity=1.016 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 036577 395 SYSILINGYCKNKEIEGALSLYSEMLSKGIKPD 427 (470)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 427 (470)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888888876
No 147
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.08 E-value=7.9e-06 Score=46.16 Aligned_cols=33 Identities=33% Similarity=0.669 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 036577 394 FSYSILINGYCKNKEIEGALSLYSEMLSKGIKP 426 (470)
Q Consensus 394 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 426 (470)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.04 E-value=0.00012 Score=52.76 Aligned_cols=94 Identities=18% Similarity=0.220 Sum_probs=55.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 036577 361 YNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFE 440 (470)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 440 (470)
+..++..+...|++++|...++.+.+.. +.+...+..+..++...|++++|.+.++...+.... +..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 3344555556666666666666665543 223355556666666666666666666666654221 33455566666666
Q ss_pred cCCHHHHHHHHHHHHH
Q 036577 441 IHQVERAFKLFDEMRR 456 (470)
Q Consensus 441 ~g~~~~A~~~~~~m~~ 456 (470)
.|++++|...+++..+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6777777666666654
No 149
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.03 E-value=0.00019 Score=58.43 Aligned_cols=117 Identities=11% Similarity=-0.036 Sum_probs=79.8
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCcchHH
Q 036577 85 ITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFP--DLYTYNILINCFCKMGRVSPGF 162 (470)
Q Consensus 85 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~ 162 (470)
.++..+...+..+.+..+.......|..+...+...|++++|+..|++.......+ ...++..+..++...|++++|+
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~ 92 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKAL 92 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 34555666666665444442346677888888888999999999999887653222 2357888888889999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHH-------hcCCHHHHHHHHHH
Q 036577 163 VVLGRILRSCFTPDAVTFNSLIKGLC-------AESRIMEAAALFTK 202 (470)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~a~~~~~~ 202 (470)
+.+++.++.. +.....+..+...+. ..|+++.|+..+++
T Consensus 93 ~~~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 93 EYYFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 9998888753 334455666666666 66666655444443
No 150
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.02 E-value=7.5e-06 Score=57.81 Aligned_cols=82 Identities=16% Similarity=0.327 Sum_probs=53.5
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 036577 84 TITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFV 163 (470)
Q Consensus 84 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 163 (470)
.|++++|+.+|+.+....|..++...+..+..++.+.|++++|+.+++. .+.+ +.+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3677888888888887776412444555678888888888888888877 3222 1223444455677777788888777
Q ss_pred HHHH
Q 036577 164 VLGR 167 (470)
Q Consensus 164 ~~~~ 167 (470)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
No 151
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.00 E-value=0.0002 Score=61.11 Aligned_cols=114 Identities=16% Similarity=0.179 Sum_probs=96.1
Q ss_pred HHHHHHHHhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 036577 66 LEKFLRERFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTY 145 (470)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~ 145 (470)
....+++.++..|....+.+++++|+..|..+++..|. ++..|..-..+|.+.|.++.|++-.+..+..+ +.-..+|
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~--nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay 152 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT--NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAY 152 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHH
Confidence 35566778888888888999999999999999999887 88889999999999999999999999888875 4456689
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHH
Q 036577 146 NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLI 184 (470)
Q Consensus 146 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 184 (470)
..|..+|...|++++|.+.|.+.+.. .|+-.+|-.=+
T Consensus 153 ~RLG~A~~~~gk~~~A~~aykKaLel--dP~Ne~~K~nL 189 (304)
T KOG0553|consen 153 GRLGLAYLALGKYEEAIEAYKKALEL--DPDNESYKSNL 189 (304)
T ss_pred HHHHHHHHccCcHHHHHHHHHhhhcc--CCCcHHHHHHH
Confidence 99999999999999999999998875 66666654433
No 152
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.99 E-value=0.00015 Score=66.73 Aligned_cols=123 Identities=15% Similarity=0.118 Sum_probs=70.8
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH
Q 036577 209 EPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV 288 (470)
Q Consensus 209 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 288 (470)
+.+......+++.+....+.+++..++.+....... ...-..|..++++.|.+.|..+.++.++..=...|+-||.
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~----~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~ 138 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNC----SYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN 138 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCccc----ccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh
Confidence 344455555555555555666666666665544321 1122234456666666666666666666666666666666
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH
Q 036577 289 VTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCK 335 (470)
Q Consensus 289 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 335 (470)
.+++.|++.+.+.|++..|.++...|..++...+..++...+.+|.+
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 66666666666666666666666666665555555555444444443
No 153
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.98 E-value=6.4e-05 Score=69.05 Aligned_cols=90 Identities=7% Similarity=-0.051 Sum_probs=75.2
Q ss_pred CccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 036577 80 GDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159 (470)
Q Consensus 80 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 159 (470)
..+..|++++|+..|+.+++..|. +...|..+..++.+.|++++|+..+++++... +.+...|..+..+|...|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~--~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPN--NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 345567899999999999988876 78888888888999999999999999888875 556778888888888999999
Q ss_pred hHHHHHHHHHhCC
Q 036577 160 PGFVVLGRILRSC 172 (470)
Q Consensus 160 ~a~~~~~~~~~~~ 172 (470)
+|...|++.++..
T Consensus 88 eA~~~~~~al~l~ 100 (356)
T PLN03088 88 TAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhC
Confidence 9999998888763
No 154
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.97 E-value=9.1e-05 Score=57.55 Aligned_cols=85 Identities=13% Similarity=0.140 Sum_probs=44.9
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHH
Q 036577 83 TTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGF 162 (470)
Q Consensus 83 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 162 (470)
..|++++|.++|+.+...+|. +..-|..|..++-..|++++|+..|......+ +.|+..+-.+..++...|+.+.|.
T Consensus 47 ~~G~l~~A~~~f~~L~~~Dp~--~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 47 EVKEFAGAARLFQLLTIYDAW--SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVCYAI 123 (157)
T ss_pred HCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHHH
Confidence 344555555555555555544 45555555555555555555555555555444 344455555555555555555555
Q ss_pred HHHHHHHh
Q 036577 163 VVLGRILR 170 (470)
Q Consensus 163 ~~~~~~~~ 170 (470)
+.|+..+.
T Consensus 124 ~aF~~Ai~ 131 (157)
T PRK15363 124 KALKAVVR 131 (157)
T ss_pred HHHHHHHH
Confidence 55554443
No 155
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.96 E-value=0.00088 Score=64.45 Aligned_cols=61 Identities=11% Similarity=-0.060 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 394 FSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 394 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
..|..+.......|++++|...++++++. .|+...|..+...+...|+.++|.+.+++...
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444444444445555555555555433 23444444444555555555555555544444
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.96 E-value=0.00029 Score=53.47 Aligned_cols=94 Identities=14% Similarity=0.012 Sum_probs=39.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC--CCHhHHHHHHHHH
Q 036577 363 TLMDGFCLTGRVNRAKELFVSMESNRCM--HDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIK--PDVVIYNTLFIGL 438 (470)
Q Consensus 363 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~ 438 (470)
.++..+...|++++|.+.|+.+...... .....+..+..++.+.|++++|...|+.+...... .....+..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3344444444444444444444432100 01223333444444445555555555444432111 0122334444444
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 036577 439 FEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 439 ~~~g~~~~A~~~~~~m~~ 456 (470)
.+.|+.++|.+.++++.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHhCChHHHHHHHHHHHH
Confidence 444555555555554444
No 157
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.96 E-value=0.00018 Score=51.83 Aligned_cols=94 Identities=16% Similarity=0.144 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 036577 110 FNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCA 189 (470)
Q Consensus 110 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (470)
|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4455556666677777777776666543 3334555666666666666677766666666543 3333556666666666
Q ss_pred cCCHHHHHHHHHHHHh
Q 036577 190 ESRIMEAAALFTKLKA 205 (470)
Q Consensus 190 ~g~~~~a~~~~~~~~~ 205 (470)
.|+++.|...+.+..+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6666666666666554
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.95 E-value=0.0006 Score=55.73 Aligned_cols=89 Identities=8% Similarity=-0.006 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHH
Q 036577 105 PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPD--LYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNS 182 (470)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 182 (470)
.....+..+...+...|++++|...|++..+.+..+. ...+..+..++.+.|++++|...+++.++.. +.+...+..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 111 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNN 111 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 3556677888888888999999999998876532221 4577888888888999999999888888753 335666777
Q ss_pred HHHHHHhcCCHH
Q 036577 183 LIKGLCAESRIM 194 (470)
Q Consensus 183 l~~~~~~~g~~~ 194 (470)
+..++...|+..
T Consensus 112 lg~~~~~~g~~~ 123 (172)
T PRK02603 112 IAVIYHKRGEKA 123 (172)
T ss_pred HHHHHHHcCChH
Confidence 777777776643
No 159
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.94 E-value=0.00022 Score=65.71 Aligned_cols=135 Identities=15% Similarity=0.181 Sum_probs=95.6
Q ss_pred HHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 036577 234 LFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE--NINPNVVTYNSLIHGFCYANDWNEAKCLL 311 (470)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 311 (470)
++..|.+..... .+.+......+++.+....+.+.+..++.+.... ....-..|..++++.|.+.|..++++.++
T Consensus 50 ~~~~l~~k~~~~---~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L 126 (429)
T PF10037_consen 50 LYSELDKKFERK---KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELL 126 (429)
T ss_pred HHHHHHHHHhcC---CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHH
Confidence 556665544221 3456666777777777777778888877777654 12122344568888888888888888888
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcC
Q 036577 312 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLT 371 (470)
Q Consensus 312 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 371 (470)
..=...|+-||..+++.+|..+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 127 ~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 127 KNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888888888888888888877776666666666666666555
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.89 E-value=0.00058 Score=62.82 Aligned_cols=89 Identities=16% Similarity=-0.012 Sum_probs=50.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhH
Q 036577 332 ELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEG 411 (470)
Q Consensus 332 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 411 (470)
.+...|++++|+..|+++++.... +...|..+..+|...|++++|...+++++... +.+...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 344555666666666666555433 44555555556666666666666666655543 2345555555666666666666
Q ss_pred HHHHHHHHHHC
Q 036577 412 ALSLYSEMLSK 422 (470)
Q Consensus 412 A~~~~~~~~~~ 422 (470)
|+..|++.++.
T Consensus 89 A~~~~~~al~l 99 (356)
T PLN03088 89 AKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHh
Confidence 66666665543
No 161
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.88 E-value=0.0014 Score=51.12 Aligned_cols=95 Identities=9% Similarity=-0.006 Sum_probs=62.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 036577 326 FNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCK 405 (470)
Q Consensus 326 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 405 (470)
...+..-+...|++++|..+|+.+...++. +..-|..|.-++-..|++++|+..|......+ +.|...+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 344445556677777777777776666543 55556666666777777777777777766654 3466666677777777
Q ss_pred cCChhHHHHHHHHHHHC
Q 036577 406 NKEIEGALSLYSEMLSK 422 (470)
Q Consensus 406 ~g~~~~A~~~~~~~~~~ 422 (470)
.|+.+.|.+.|+..+..
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 77777777777766543
No 162
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.88 E-value=0.00073 Score=51.25 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=5.8
Q ss_pred HHHhCCCHHHHHHHHH
Q 036577 262 GLCKEGFVDKAKELFL 277 (470)
Q Consensus 262 ~~~~~g~~~~a~~~~~ 277 (470)
++.+.|+++.|...|+
T Consensus 48 ~~~~~~~~~~A~~~~~ 63 (119)
T TIGR02795 48 AYYAQGKYADAAKAFL 63 (119)
T ss_pred HHHhhccHHHHHHHHH
Confidence 3333333333333333
No 163
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.87 E-value=2e-05 Score=43.30 Aligned_cols=29 Identities=45% Similarity=0.793 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 036577 430 IYNTLFIGLFEIHQVERAFKLFDEMRRDG 458 (470)
Q Consensus 430 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 458 (470)
+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555666666666666666666655554
No 164
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.87 E-value=0.00036 Score=61.85 Aligned_cols=128 Identities=13% Similarity=0.087 Sum_probs=52.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc-CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036577 326 FNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCL-TGRVNRAKELFVSMESNRCMHDVFSYSILINGYC 404 (470)
Q Consensus 326 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 404 (470)
|..++....+.+..+.|..+|.++.+.+ ..+..+|...+..-.+ .++.+.|.++|+...+. ++.+...|...++.+.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 4444444444444445555555444321 1122233333222222 23333355555444433 2234444444444444
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCH---hHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 405 KNKEIEGALSLYSEMLSKGIKPDV---VIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
..|+.+.|..+|++.+.. +.++. ..|...+.--.+.|+.+.+.++.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555544432 11111 2444444444445555555555544443
No 165
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.84 E-value=0.0002 Score=61.15 Aligned_cols=102 Identities=24% Similarity=0.221 Sum_probs=81.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q 036577 330 MDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEI 409 (470)
Q Consensus 330 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 409 (470)
..-..+.+++.+|+..|.+.++..+. |.+.|..-..+|.+.|.++.|++-.+..+..+ +--..+|..|..+|...|++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcH
Confidence 34466788899999999999988655 78888888889999999999998888887764 33567888999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHH
Q 036577 410 EGALSLYSEMLSKGIKPDVVIYNTLF 435 (470)
Q Consensus 410 ~~A~~~~~~~~~~~~~p~~~~~~~l~ 435 (470)
++|++.|++.++ +.|+..+|..=+
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHHHHH
Confidence 999999998884 567766665433
No 166
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.0017 Score=56.00 Aligned_cols=130 Identities=12% Similarity=0.053 Sum_probs=103.6
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CcchHH
Q 036577 86 TPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG---RVSPGF 162 (470)
Q Consensus 86 ~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~a~ 162 (470)
.++....-++.-+..+|. |...|-.|..+|...|+++.|..-|.+..+.. +++...+..+..++.... ...++.
T Consensus 137 ~~~~l~a~Le~~L~~nP~--d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~ 213 (287)
T COG4235 137 EMEALIARLETHLQQNPG--DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKAR 213 (287)
T ss_pred cHHHHHHHHHHHHHhCCC--CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence 467777788888888887 99999999999999999999999999998875 667777777777665443 356788
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 036577 163 VVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLING 221 (470)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 221 (470)
++|+++++.. +.|+.+...|...+...|++.+|...|+.|.+.. |....+..++..
T Consensus 214 ~ll~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie~ 269 (287)
T COG4235 214 ALLRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIER 269 (287)
T ss_pred HHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHHH
Confidence 9999999874 5577777888889999999999999999999863 444555555543
No 167
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.84 E-value=0.0084 Score=51.81 Aligned_cols=184 Identities=10% Similarity=0.018 Sum_probs=112.4
Q ss_pred CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 036577 252 NTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVT---YNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNV 328 (470)
Q Consensus 252 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 328 (470)
+...+-.....+...|++++|.+.|+.+...... +... .-.+..+|.+.+++++|...+++..+........-+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 3444445566667789999999999998876322 2222 24566778899999999999999887632211222333
Q ss_pred HHHHHHH--cC---------------C---HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 036577 329 IMDELCK--NG---------------K---MDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNR 388 (470)
Q Consensus 329 l~~~~~~--~g---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 388 (470)
.+.+.+. .+ + ..+|...|+.+++. |-...-..+|...+..+...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH-
Confidence 3333221 11 1 12333444444433 33333345555444443321
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC--CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036577 389 CMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK--GIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMR 455 (470)
Q Consensus 389 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (470)
-...--.+...|.+.|.+..|+.-++.+++. +.+........++.+|...|..++|..+...+.
T Consensus 174 ---la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 ---LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ---HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1112235667789999999999999999975 223334566778899999999999988877664
No 168
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.83 E-value=0.00028 Score=50.85 Aligned_cols=80 Identities=20% Similarity=0.348 Sum_probs=58.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCC--------cchHHHHHHHHHhCCCCCCHHHH
Q 036577 110 FNILFGCLAKNKHYDTVLSLFKRLNSTGL-FPDLYTYNILINCFCKMGR--------VSPGFVVLGRILRSCFTPDAVTF 180 (470)
Q Consensus 110 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~--------~~~a~~~~~~~~~~~~~~~~~~~ 180 (470)
....|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++..- +-+.+.++++|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666667999999999999999998 8999999999988776542 23445566777776677777777
Q ss_pred HHHHHHHHh
Q 036577 181 NSLIKGLCA 189 (470)
Q Consensus 181 ~~l~~~~~~ 189 (470)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 776666543
No 169
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.81 E-value=0.0028 Score=54.74 Aligned_cols=175 Identities=11% Similarity=0.094 Sum_probs=104.4
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHH--hcC-
Q 036577 82 ITTITPNEAFCIFDYMLNMRPSPPP-VSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLF-PDLYTYNILINCFC--KMG- 156 (470)
Q Consensus 82 ~~~~~~~~A~~~f~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~--~~g- 156 (470)
...|++++|.+.|+.+....|..+- ..+.-.++.++.+.+++++|...+++..+..-. |+. -+...+.+.+ ..+
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~~~~~~~ 121 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLTNMALDD 121 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHhhhhcch
Confidence 4567899999999999888887221 112345677788889999999999988876311 222 2222222222 111
Q ss_pred --------------C---cchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHH
Q 036577 157 --------------R---VSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLI 219 (470)
Q Consensus 157 --------------~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 219 (470)
+ ..+|...|+++++. |=...-..+|...+..+... . ...--.+.
T Consensus 122 ~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~---l-a~~e~~ia 182 (243)
T PRK10866 122 SALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR---L-AKYELSVA 182 (243)
T ss_pred hhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH---H-HHHHHHHH
Confidence 1 11233344444433 22222334444444333321 0 01111455
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 036577 220 NGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMK 280 (470)
Q Consensus 220 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 280 (470)
.-|.+.|.+..|..-++.+.+..+. .+........++.+|...|..++|..+...+.
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~----t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPD----TQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCC----CchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 6688889999999999999887754 24455667778888888999888888776554
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.79 E-value=0.0024 Score=52.20 Aligned_cols=86 Identities=14% Similarity=0.089 Sum_probs=40.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 036577 290 TYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPN--VVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDG 367 (470)
Q Consensus 290 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 367 (470)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.... +...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 344444555555555555555555554321111 234444555555555555555555555544222 33344444444
Q ss_pred HHcCCCHHH
Q 036577 368 FCLTGRVNR 376 (470)
Q Consensus 368 ~~~~g~~~~ 376 (470)
+...|+...
T Consensus 116 ~~~~g~~~~ 124 (172)
T PRK02603 116 YHKRGEKAE 124 (172)
T ss_pred HHHcCChHh
Confidence 444444333
No 171
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.78 E-value=2.7e-05 Score=42.77 Aligned_cols=29 Identities=45% Similarity=0.894 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 036577 395 SYSILINGYCKNKEIEGALSLYSEMLSKG 423 (470)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 423 (470)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666554
No 172
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.77 E-value=0.00068 Score=55.20 Aligned_cols=93 Identities=11% Similarity=0.044 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036577 324 VTFNVIMDELCKNGKMDEASRLLDLMIQIGVRP--NAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILIN 401 (470)
Q Consensus 324 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 401 (470)
..|..+...+...|++++|...++........+ ...++..+...+...|++++|...++...... +....++..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 344555555556666666666666665543222 12355666666666666666666666665542 223444445554
Q ss_pred HHH-------HcCChhHHHHHHH
Q 036577 402 GYC-------KNKEIEGALSLYS 417 (470)
Q Consensus 402 ~~~-------~~g~~~~A~~~~~ 417 (470)
.+. ..|++++|...++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHH
Confidence 444 5556554444443
No 173
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.76 E-value=7.9e-05 Score=52.54 Aligned_cols=81 Identities=19% Similarity=0.163 Sum_probs=36.4
Q ss_pred cCCHHHHHHHHHHHHhcCCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCC
Q 036577 190 ESRIMEAAALFTKLKAFGCE-PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGF 268 (470)
Q Consensus 190 ~g~~~~a~~~~~~~~~~g~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 268 (470)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..+++. ...+ +.+......+..++.+.|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-------~~~~~~~~l~a~~~~~l~~ 73 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-------PSNPDIHYLLARCLLKLGK 73 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-------HCHHHHHHHHHHHHHHTT-
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-------CCCHHHHHHHHHHHHHhCC
Confidence 34555555555555543211 1223333345555555555555555555 2211 1222333334555555555
Q ss_pred HHHHHHHHHH
Q 036577 269 VDKAKELFLK 278 (470)
Q Consensus 269 ~~~a~~~~~~ 278 (470)
+++|++++++
T Consensus 74 y~eAi~~l~~ 83 (84)
T PF12895_consen 74 YEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 5555555543
No 174
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.0019 Score=55.67 Aligned_cols=127 Identities=11% Similarity=0.100 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCC---CHHHHHHH
Q 036577 304 WNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTG---RVNRAKEL 380 (470)
Q Consensus 304 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~ 380 (470)
.+....-++.-...+ +-|...|..|..+|...|+.+.|..-|....+...+ +...+..+..++.... .-.++..+
T Consensus 138 ~~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 444444444444443 667778888888888888888888888888776433 6666666666654332 35677778
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 036577 381 FVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLF 435 (470)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 435 (470)
|++++..+ +-|+.+..-|...+...|++.+|...|+.|++. -|....+..++
T Consensus 216 l~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~i 267 (287)
T COG4235 216 LRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLI 267 (287)
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHH
Confidence 88877764 447777777777788888888888888888764 33344444444
No 175
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.74 E-value=0.00082 Score=48.52 Aligned_cols=75 Identities=19% Similarity=0.363 Sum_probs=43.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCC-CCCHhHHHHHHHHHHHcC--------CHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 036577 295 IHGFCYANDWNEAKCLLIEMMDQGV-QPNVVTFNVIMDELCKNG--------KMDEASRLLDLMIQIGVRPNAFVYNTLM 365 (470)
Q Consensus 295 i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 365 (470)
|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+++.|+..+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3344444666666666666666666 566666666666554432 2334555666666666666666666666
Q ss_pred HHHH
Q 036577 366 DGFC 369 (470)
Q Consensus 366 ~~~~ 369 (470)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5554
No 176
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.73 E-value=0.0035 Score=55.81 Aligned_cols=119 Identities=15% Similarity=0.115 Sum_probs=65.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc-CChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHH
Q 036577 183 LIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRT-GHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIID 261 (470)
Q Consensus 183 l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 261 (470)
.+..|...|++..|-+++.++- ..|... |++++|++.|++..+.....+. ...-..++..+..
T Consensus 100 A~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~-~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGS-PHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHHHHH
Confidence 4455666666666655555543 345455 7888888888877654311000 0112345566677
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 036577 262 GLCKEGFVDKAKELFLKMKDENIN-----PNVV-TYNSLIHGFCYANDWNEAKCLLIEMMDQ 317 (470)
Q Consensus 262 ~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (470)
.+.+.|++++|.++|+++...... .+.. .+-..+-++...||+..|...+++....
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 788888888888888877654221 1121 1222333556667777887777777654
No 177
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.73 E-value=9.6e-05 Score=49.64 Aligned_cols=62 Identities=26% Similarity=0.324 Sum_probs=47.9
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 036577 83 TTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148 (470)
Q Consensus 83 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l 148 (470)
..|++++|++.|+.+....|. +..++..++.+|.+.|++++|.++++++... .|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD--NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT--SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 467888999999999888887 7888888889999999999999999888876 4554444333
No 178
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.72 E-value=0.0019 Score=57.29 Aligned_cols=131 Identities=11% Similarity=0.060 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh-cCChHHHHHHHHHHHhcCCCCCcccCCCHhhH
Q 036577 178 VTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCR-TGHTIVALNLFEEMANGNGEIGVVCEPNTVTY 256 (470)
Q Consensus 178 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (470)
.+|..+++..-+.+..+.|..+|.+..+.+ ..+...|......-.. .++.+.|.++|+...+.. +.+...|
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-------~~~~~~~ 73 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-------PSDPDFW 73 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-------TT-HHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-------CCCHHHH
Confidence 356666666666666777777777666432 1233334333333222 455555777777766553 5566666
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 036577 257 TTIIDGLCKEGFVDKAKELFLKMKDENINPN---VVTYNSLIHGFCYANDWNEAKCLLIEMMDQ 317 (470)
Q Consensus 257 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (470)
...++.+.+.++.+.|..+|+..... +.++ ...|...+..=.+.|+.+.+..+.+++.+.
T Consensus 74 ~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 74 LEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66666666777777777777766654 2211 236666666666666766666666666554
No 179
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.012 Score=52.76 Aligned_cols=327 Identities=13% Similarity=-0.011 Sum_probs=169.4
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 036577 116 CLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIME 195 (470)
Q Consensus 116 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 195 (470)
.+.+..++..|+..+....... +.+..-|..-...+...|++++|.--.+.-++.. +-......-.-+++...++..+
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHH
Confidence 3455677888888888888775 4456667777777777777777765444433321 1112223333344444444444
Q ss_pred HHHHHHH---------------HHhc-CCCCCcchHHHH-HHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHH
Q 036577 196 AAALFTK---------------LKAF-GCEPNVITYSTL-INGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTT 258 (470)
Q Consensus 196 a~~~~~~---------------~~~~-g~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (470)
|.+.++. +... .-+|....|..+ ..++...|+.++|.+.--.....+ ..+......
T Consensus 136 A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-------~~n~~al~v 208 (486)
T KOG0550|consen 136 AEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-------ATNAEALYV 208 (486)
T ss_pred HHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-------cchhHHHHh
Confidence 4443331 1100 011222333333 245566778888887777766654 333333333
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHH---H----------HHHHccCCHHHHHHHHHHHHHC---CCCCC
Q 036577 259 IIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSL---I----------HGFCYANDWNEAKCLLIEMMDQ---GVQPN 322 (470)
Q Consensus 259 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l---i----------~~~~~~~~~~~a~~~~~~~~~~---~~~~~ 322 (470)
-..++.-.++.+.+...|++.+..+ |+...-..+ . .-..+.|.+..|.+.+.+.+.. ...++
T Consensus 209 rg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~n 286 (486)
T KOG0550|consen 209 RGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTN 286 (486)
T ss_pred cccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchh
Confidence 3334445677888888888777653 443322221 1 1234667777777777777654 23444
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 036577 323 VVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMH-DVFSYSILIN 401 (470)
Q Consensus 323 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~ 401 (470)
...|.....+..+.|+.++|+.--+...+.+.. -...|..-..++...+++++|.+-++...+....+ ...++.....
T Consensus 287 aklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~ 365 (486)
T KOG0550|consen 287 AKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQL 365 (486)
T ss_pred HHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHH
Confidence 555666666677777777777777777654211 12233333445556677777777777766543222 2333333333
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH---hcCCHHHHHHHHHHHH
Q 036577 402 GYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLF---EIHQVERAFKLFDEMR 455 (470)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~m~ 455 (470)
++-+..+.+- ..++.-.......|.-..|..+.-.+. ..|...+|+..|++.-
T Consensus 366 aLkkSkRkd~-ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevg 421 (486)
T KOG0550|consen 366 ALKKSKRKDW-YKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVG 421 (486)
T ss_pred HHHHhhhhhH-HHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHH
Confidence 3333222111 111111111122334445544332222 2355566766666553
No 180
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.71 E-value=0.0022 Score=61.74 Aligned_cols=135 Identities=10% Similarity=-0.014 Sum_probs=100.2
Q ss_pred CCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc--------chHHHHHHHHHhC
Q 036577 105 PPVSSFNILFGCLAKNK-----HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV--------SPGFVVLGRILRS 171 (470)
Q Consensus 105 ~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~--------~~a~~~~~~~~~~ 171 (470)
.+..+|...+++..... +.+.|.++|++..+.. +.....|..+..++.....+ ..+.+..++....
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 57889999988865433 3779999999999885 44556666665555433222 2333333333332
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 036577 172 -CFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242 (470)
Q Consensus 172 -~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 242 (470)
..+.+..+|..+.-.+...|++++|...+++....+ |+...|..+...+...|+.++|.+.+++....+
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 134456778888777778999999999999999865 688899999999999999999999999998865
No 181
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.70 E-value=0.033 Score=49.74 Aligned_cols=282 Identities=16% Similarity=0.098 Sum_probs=175.9
Q ss_pred cCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhcCCCCCcch--HHHHHHHHHhcCChHH
Q 036577 155 MGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGL--CAESRIMEAAALFTKLKAFGCEPNVIT--YSTLINGLCRTGHTIV 230 (470)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~g~~~~ 230 (470)
.|+-..|.++-.+..+. +..|....-.|+.+- .-.|+++.|.+-|+.|... |.... ...|.-.-.+.|+.+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 45556666655544321 233444444444432 3478888888888888753 33222 2333334456788888
Q ss_pred HHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCC-CCCCHHH--HHHHHHHH---HccCCH
Q 036577 231 ALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDEN-INPNVVT--YNSLIHGF---CYANDW 304 (470)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~--~~~li~~~---~~~~~~ 304 (470)
|..+-+..-... +.-...+...+...|..|+++.|+++++.-.... +.+++.- -..|+.+- .-..+.
T Consensus 173 Ar~yAe~Aa~~A-------p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp 245 (531)
T COG3898 173 ARHYAERAAEKA-------PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP 245 (531)
T ss_pred HHHHHHHHHhhc-------cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence 888888776654 3445677888888888999999999888765532 2333321 22222221 122356
Q ss_pred HHHHHHHHHHHHCCCCCCHhHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHH
Q 036577 305 NEAKCLLIEMMDQGVQPNVVTF-NVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVS 383 (470)
Q Consensus 305 ~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 383 (470)
..|...-.+..+. .||..-- ..-..++.+.|+..++-.+++.+-+..+.|+. + .+..+.+.|+... .-+++
T Consensus 246 ~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gdta~--dRlkR 317 (531)
T COG3898 246 ASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGDTAL--DRLKR 317 (531)
T ss_pred HHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCCcHH--HHHHH
Confidence 6666655555544 5554332 23356788999999999999999988655543 2 2233455665332 22222
Q ss_pred H---HHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh-cCCHHHHHHHHHHHHHcC
Q 036577 384 M---ESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFE-IHQVERAFKLFDEMRRDG 458 (470)
Q Consensus 384 ~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~g 458 (470)
. .+. -+.+..+...+..+-...|++..|..--+.... ..|....|..|.+.-.. .|+..++..++-+..+.-
T Consensus 318 a~~L~sl-k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 318 AKKLESL-KPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHHhc-CccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 2 221 133777777888888899999998888777764 47788888877776554 499999999988887643
No 182
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.68 E-value=0.00023 Score=47.26 Aligned_cols=56 Identities=9% Similarity=0.188 Sum_probs=33.7
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 400 INGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 400 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
...+...|++++|.+.|+++++.... +...+..+..++...|++++|..+|+++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556666666666666666654311 444666666666666666666666666655
No 183
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.66 E-value=0.00068 Score=60.36 Aligned_cols=129 Identities=15% Similarity=0.101 Sum_probs=56.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH----HCCCC-CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCCHhH
Q 036577 291 YNSLIHGFCYANDWNEAKCLLIEMM----DQGVQ-PNVVTFNVIMDELCKNGKMDEASRLLDLMIQI----GV-RPNAFV 360 (470)
Q Consensus 291 ~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~ 360 (470)
|..|...|.-.|++++|+...+.-. +.|.. .....+..+..++.-.|+++.|.+.|+..... |- ......
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 4444444555556666655443322 11211 11234445555555555566555555543221 11 112223
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 036577 361 YNTLMDGFCLTGRVNRAKELFVSMESN----R-CMHDVFSYSILINGYCKNKEIEGALSLYSEM 419 (470)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (470)
.-+|.+.|.-..++++|+.++.+-... + ..-....+.+|..+|...|..++|+.+.+.-
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 334445554445555555555442210 0 0013334444555555555555555544433
No 184
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.64 E-value=0.00025 Score=47.72 Aligned_cols=64 Identities=14% Similarity=0.240 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 036577 392 DVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIH-QVERAFKLFDEMRR 456 (470)
Q Consensus 392 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 456 (470)
+...|..+...+...|++++|+..|++.++.+.. +...|..+..++...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4556667777777777777777777777765322 4456666777777777 57777777777665
No 185
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.62 E-value=0.022 Score=45.35 Aligned_cols=133 Identities=12% Similarity=0.091 Sum_probs=94.4
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCCHhH
Q 036577 284 INPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGV---RPNAFV 360 (470)
Q Consensus 284 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~ 360 (470)
..|++.....|..+....|++.+|...|++...--..-|....-.+..+....+++..|...++++.+... .|| +
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--G 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--c
Confidence 35777777778888888888888888888887665666777777788888888888888888888777632 233 3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 036577 361 YNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEML 420 (470)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 420 (470)
...+.+.+...|....|+.-|+...+.- |+...-.-....+.+.|+.++|..-+.+..
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 4456777888888888888888887753 444433334455677777777665554443
No 186
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.59 E-value=0.0007 Score=60.27 Aligned_cols=272 Identities=12% Similarity=0.036 Sum_probs=168.4
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHH--HHhC--CC-CCCHHHHHHH
Q 036577 78 GEGDITTITPNEAFCIFDYMLNMRPSPPPV----SSFNILFGCLAKNKHYDTVLSLFKR--LNST--GL-FPDLYTYNIL 148 (470)
Q Consensus 78 ~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~--m~~~--~~-~~~~~~~~~l 148 (470)
|+..++.|+...-+.+|+.+++.+.. +. .+|..|..+|...++|++|++.... .+.+ |- .-...+...|
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTe--Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTE--DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcch--HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 44456778899999999999998765 32 3466677777778899999887643 1111 10 1123344556
Q ss_pred HHHHHhcCCcchHHHHHHHH----HhCCC-CCCHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHH
Q 036577 149 INCFCKMGRVSPGFVVLGRI----LRSCF-TPDAVTFNSLIKGLCAESR--------------------IMEAAALFTKL 203 (470)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~~----~~~~~-~~~~~~~~~l~~~~~~~g~--------------------~~~a~~~~~~~ 203 (470)
.+.+--.|.+++|.-.-.+- .+.|- ......+..+...|...|+ ++.|.+.|.+=
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 66666777888776543221 12221 1123344556777765443 23344444432
Q ss_pred H----hcCCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHH
Q 036577 204 K----AFGCE-PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLK 278 (470)
Q Consensus 204 ~----~~g~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 278 (470)
. +.|-. .--..|..|...|.-.|+++.|+...+.-.....+++. -......+..+.+++.-.|+++.|.+.|+.
T Consensus 182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD-rAaeRRA~sNlgN~hiflg~fe~A~ehYK~ 260 (639)
T KOG1130|consen 182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD-RAAERRAHSNLGNCHIFLGNFELAIEHYKL 260 (639)
T ss_pred HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh-HHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence 1 11100 12345666777777788999988876654443322211 123345788888999999999999998877
Q ss_pred HHh----CC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----C-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 036577 279 MKD----EN-INPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ----G-VQPNVVTFNVIMDELCKNGKMDEASRLLDL 348 (470)
Q Consensus 279 ~~~----~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 348 (470)
-.. .| -.....+..+|...|.-..++++|+.++.+-... + ..-....+.++..+|...|..++|+.+.+.
T Consensus 261 tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 261 TLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 543 22 1234556677888888888899999888764321 1 122456788899999999999999888776
Q ss_pred HHHc
Q 036577 349 MIQI 352 (470)
Q Consensus 349 ~~~~ 352 (470)
-.+.
T Consensus 341 hl~~ 344 (639)
T KOG1130|consen 341 HLRS 344 (639)
T ss_pred HHHH
Confidence 6543
No 187
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.54 E-value=0.0044 Score=55.22 Aligned_cols=95 Identities=13% Similarity=0.127 Sum_probs=44.4
Q ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-----CH
Q 036577 361 YNTLMDGFCLT-GRVNRAKELFVSMESN----RCMH--DVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP-----DV 428 (470)
Q Consensus 361 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~ 428 (470)
+..+...|... |++++|.+.|++..+. + .+ -..++..++..+.+.|++++|+++|++........ +.
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 33444455555 5666666666554331 1 11 12334455556666666666666666665432211 11
Q ss_pred h-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 429 V-IYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 429 ~-~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
. .|...+-.+...|+...|.+.+++...
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1 122233344455666666666666553
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.53 E-value=0.0091 Score=44.83 Aligned_cols=91 Identities=16% Similarity=0.023 Sum_probs=47.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHH
Q 036577 330 MDELCKNGKMDEASRLLDLMIQIGVRPN--AFVYNTLMDGFCLTGRVNRAKELFVSMESNRCM--HDVFSYSILINGYCK 405 (470)
Q Consensus 330 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 405 (470)
..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+++........ -+......+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 4445556666666666666666554432 234445555566666666666666655543211 012222223345555
Q ss_pred cCChhHHHHHHHHHH
Q 036577 406 NKEIEGALSLYSEML 420 (470)
Q Consensus 406 ~g~~~~A~~~~~~~~ 420 (470)
.|+.++|++.+-...
T Consensus 88 ~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL 102 (120)
T ss_pred CCCHHHHHHHHHHHH
Confidence 666666666554443
No 189
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.51 E-value=0.00017 Score=47.96 Aligned_cols=53 Identities=21% Similarity=0.295 Sum_probs=36.4
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036577 82 ITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNST 136 (470)
Q Consensus 82 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 136 (470)
...|++++|+..|+.+++..|. +..+|..+..++...|++++|...|+++.+.
T Consensus 8 ~~~g~~~~A~~~~~~~l~~~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 8 YQQGDYDEAIAAFEQALKQDPD--NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHCTHHHHHHHHHHHHHCCSTT--HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4456777777777777776665 6677777777777777777777777776654
No 190
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.49 E-value=0.033 Score=44.36 Aligned_cols=102 Identities=18% Similarity=0.147 Sum_probs=54.0
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCcchHHH
Q 036577 139 FPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGC-EPNVITYST 217 (470)
Q Consensus 139 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~ 217 (470)
.|+..--..|..++.+.|+..+|...|++....-+..|....-.+.++....+++..|...++.+.+... ..+..+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4455555555555566666666666666555444444555555555555556666666666555554320 012233334
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 036577 218 LINGLCRTGHTIVALNLFEEMAN 240 (470)
Q Consensus 218 l~~~~~~~g~~~~a~~~~~~~~~ 240 (470)
+...+...|..++|...|+....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH
Confidence 44555555555556555555554
No 191
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.49 E-value=0.0066 Score=45.60 Aligned_cols=92 Identities=18% Similarity=0.142 Sum_probs=55.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCC---CHHHHHHHHHHH
Q 036577 113 LFGCLAKNKHYDTVLSLFKRLNSTGLFPD--LYTYNILINCFCKMGRVSPGFVVLGRILRSCFTP---DAVTFNSLIKGL 187 (470)
Q Consensus 113 l~~~~~~~~~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~ 187 (470)
+..++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..+++...... +. +......+..++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence 44555566777777777777777664433 2355556667777777777777777766542 11 222333344456
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 036577 188 CAESRIMEAAALFTKLKA 205 (470)
Q Consensus 188 ~~~g~~~~a~~~~~~~~~ 205 (470)
...|+.++|++.+-....
T Consensus 86 ~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 667777777776655443
No 192
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.48 E-value=0.11 Score=50.08 Aligned_cols=316 Identities=16% Similarity=0.147 Sum_probs=146.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH----------HHHhcCCcchHHHHHHHHHhCCCC
Q 036577 105 PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILIN----------CFCKMGRVSPGFVVLGRILRSCFT 174 (470)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~----------~~~~~g~~~~a~~~~~~~~~~~~~ 174 (470)
|.+..|..+.....+.-.++.|...|-+.... +.......|-. .-+-.|++++|.+++-++-++.+.
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDLA 766 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDLA 766 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhhh
Confidence 67889999999888888888888887654332 22211111111 112246777777777665543211
Q ss_pred ----CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHH------HHHHhc
Q 036577 175 ----PDAVTFNSLIKGLCAES---RIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLF------EEMANG 241 (470)
Q Consensus 175 ----~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~------~~~~~~ 241 (470)
...--|..+.+.+..-| +-+.-...|+.|-+. ..+...|......|...|+.+.-.+.+ ..+...
T Consensus 767 ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~--fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~l 844 (1189)
T KOG2041|consen 767 IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGET--FAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVL 844 (1189)
T ss_pred HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHH
Confidence 01111222222221100 111111222222111 122333444444444444433222211 111111
Q ss_pred CCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 036577 242 NGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQP 321 (470)
Q Consensus 242 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 321 (470)
... .+.+....-.+..++.+.|.-++|.+.|-+... | ...+..|...++|.+|.++-+... -|
T Consensus 845 a~~----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~avelaq~~~----l~ 907 (1189)
T KOG2041|consen 845 ART----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVELAQRFQ----LP 907 (1189)
T ss_pred HHh----cCcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHHHHHhcc----ch
Confidence 000 244555666777778888887777776633321 1 123455666677777766654432 11
Q ss_pred CHhHH--------------HHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCH----hHHHHH-HHHH----------
Q 036577 322 NVVTF--------------NVIMDELCKNGKMDEASRLLDLMIQI----GVRPNA----FVYNTL-MDGF---------- 368 (470)
Q Consensus 322 ~~~~~--------------~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~----~~~~~l-~~~~---------- 368 (470)
...+. .--|..+.+.|+.-.|-+++.+|.+. +.++-. .++.++ +.-+
T Consensus 908 qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~ 987 (1189)
T KOG2041|consen 908 QVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKI 987 (1189)
T ss_pred hHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 11111 11234456667666666666666543 222111 111111 1111
Q ss_pred HcCCCHHHHHHHHHHHHHC-------CC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCHhHHHHHHHHH
Q 036577 369 CLTGRVNRAKELFVSMESN-------RC--MHDVFSYSILINGYCKNKEIEGALSLYSEMLSK-GIKPDVVIYNTLFIGL 438 (470)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~~-------~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~ 438 (470)
-+.|..++|..+++...-. +. -....+|..|.+--...|.++.|+..--.+.+. .+-|...+|..|.-+-
T Consensus 988 ~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaa 1067 (1189)
T KOG2041|consen 988 DKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAA 1067 (1189)
T ss_pred hhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHH
Confidence 1345556665544432211 00 012344455555566678888888764444432 4566677777665544
Q ss_pred HhcC
Q 036577 439 FEIH 442 (470)
Q Consensus 439 ~~~g 442 (470)
+...
T Consensus 1068 ca~r 1071 (1189)
T KOG2041|consen 1068 CAVR 1071 (1189)
T ss_pred hhhh
Confidence 4433
No 193
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.44 E-value=0.022 Score=47.83 Aligned_cols=182 Identities=13% Similarity=0.091 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH--hHHHHH
Q 036577 254 VTYTTIIDGLCKEGFVDKAKELFLKMKDENI--NPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNV--VTFNVI 329 (470)
Q Consensus 254 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l 329 (470)
..+-.....+...|++++|.+.|+.+...-. +--....-.++.++.+.|+++.|...++..++. -|+. .-+...
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y 83 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALY 83 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHH
Confidence 3444556667788999999999999987521 122345566788889999999999999998876 2332 112222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC---CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 036577 330 MDELCKNGKMDEASRLLDLMIQIGVR---PNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKN 406 (470)
Q Consensus 330 ~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 406 (470)
+.+.+......... ....+.. --...+..++.-|-...-..+|...+..+... =...--.+...|.+.
T Consensus 84 ~~g~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~ 154 (203)
T PF13525_consen 84 MLGLSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKR 154 (203)
T ss_dssp HHHHHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHc
Confidence 22221111111000 0000000 00123444555555566666666665555432 112223467789999
Q ss_pred CChhHHHHHHHHHHHCCCCCC----HhHHHHHHHHHHhcCCHHHHH
Q 036577 407 KEIEGALSLYSEMLSKGIKPD----VVIYNTLFIGLFEIHQVERAF 448 (470)
Q Consensus 407 g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~ 448 (470)
|.+..|..-++.+++. -|+ ......++.++.+.|..+.+.
T Consensus 155 ~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp T-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 9999999999999886 233 235567788999999888554
No 194
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=0.069 Score=45.13 Aligned_cols=132 Identities=11% Similarity=0.027 Sum_probs=69.3
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHH-----
Q 036577 255 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVI----- 329 (470)
Q Consensus 255 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----- 329 (470)
+.+.++.++.-.|.+.-...++.++.+...+.++.....+.+.-.+.||.+.|...|++..+..-..+..+.+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 445555555566666666666666666555556666666666666667766666666655543222232222222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 036577 330 MDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESN 387 (470)
Q Consensus 330 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (470)
...|...+++..|...+.++...+.. |+...|.-.-+..-.|+...|.+..+.|.+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22334445555555555555554332 3333333333333345555566555555554
No 195
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.36 E-value=0.0011 Score=44.45 Aligned_cols=53 Identities=23% Similarity=0.286 Sum_probs=36.4
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 036577 223 CRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE 282 (470)
Q Consensus 223 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 282 (470)
...|++++|+++|+++.... +.+...+..+..+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35677777777777776665 446666677777777777777777777777665
No 196
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.36 E-value=0.1 Score=46.92 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=73.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 036577 290 TYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFC 369 (470)
Q Consensus 290 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 369 (470)
+.+.-+.-+...|+...|.++-.+.. .|+-..|...+.+++..+++++-..+-.. +-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 34445556667777777777765553 56777777788888888888776655332 113466777788888
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 036577 370 LTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEM 419 (470)
Q Consensus 370 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (470)
+.|+..+|..+...+ .+..-+..|.+.|++.+|.+.-.+.
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 888888887776551 1245667778888888887764443
No 197
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=0.074 Score=44.96 Aligned_cols=175 Identities=7% Similarity=0.031 Sum_probs=122.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHH-----H
Q 036577 290 TYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNT-----L 364 (470)
Q Consensus 290 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----l 364 (470)
+.+.++.++.-.|.+.-...++.+.++...+.++.....+++.-.+.|+.+.|...|++..+..-+.|..+++. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44567777777888999999999999877677888889999999999999999999998876544444444433 3
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc---
Q 036577 365 MDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEI--- 441 (470)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--- 441 (470)
...|.-.+++..|...+.++...+ +.|+..-|.-.-+....|+..+|++.++.|.+. .|...+-++++..++..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~~nL~tmyEL 335 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVLFNLTTMYEL 335 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHHHHHHHHHHH
Confidence 445666788889988888887764 346777777777777889999999999999965 45555445444333221
Q ss_pred --CCHHHHHHHHHHHHHcCCCCChhhhhc
Q 036577 442 --HQVERAFKLFDEMRRDGVAADTWTYRT 468 (470)
Q Consensus 442 --g~~~~A~~~~~~m~~~g~~p~~~~~~~ 468 (470)
-+..+-...+...+. |..||.+.-.|
T Consensus 336 ~Ys~~~~~k~~l~~~ia-~~~~d~f~~~c 363 (366)
T KOG2796|consen 336 EYSRSMQKKQALLEAVA-GKEGDSFNTQC 363 (366)
T ss_pred HhhhhhhHHHHHHHHHh-ccCCCcccchh
Confidence 122233344444443 57888765443
No 198
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.33 E-value=0.024 Score=47.66 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=9.0
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 036577 115 GCLAKNKHYDTVLSLFKRLNS 135 (470)
Q Consensus 115 ~~~~~~~~~~~A~~~~~~m~~ 135 (470)
..+...|++.+|+..|+.+..
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~ 33 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLID 33 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 333444444444444444443
No 199
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.30 E-value=0.0085 Score=49.19 Aligned_cols=86 Identities=20% Similarity=0.228 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc----------------CCHHHHHHH
Q 036577 287 NVVTYNSLIHGFCY-----ANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKN----------------GKMDEASRL 345 (470)
Q Consensus 287 ~~~~~~~li~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g~~~~a~~~ 345 (470)
+-.+|..+++.|.+ .|..+=....+..|.+-|+.-|..+|+.|+..+=+. .+.+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 44555555555542 345555556666666666666666666666654331 123445566
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHHHcCC
Q 036577 346 LDLMIQIGVRPNAFVYNTLMDGFCLTG 372 (470)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~~~~~g 372 (470)
+++|...|+-||..++..+++.+.+.+
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 666666666666666666666654433
No 200
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.30 E-value=0.015 Score=45.92 Aligned_cols=70 Identities=20% Similarity=0.239 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCChhh
Q 036577 395 SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMR-----RDGVAADTWT 465 (470)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~ 465 (470)
+...++..+...|++++|..+.+.++.... -+...|..++.++...|+..+|.+.|+++. +.|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344555566666777777777766665432 255566666777777777777776666664 3466666554
No 201
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.30 E-value=0.0013 Score=44.14 Aligned_cols=63 Identities=21% Similarity=0.166 Sum_probs=37.0
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHH
Q 036577 358 AFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNK-EIEGALSLYSEMLS 421 (470)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 421 (470)
...|..+...+...|++++|+..|++.++.+ +.+...|..+..++...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4455556666666666666666666665543 335555666666666666 46666666665553
No 202
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.30 E-value=0.0076 Score=52.52 Aligned_cols=97 Identities=12% Similarity=0.053 Sum_probs=54.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHcCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHH
Q 036577 326 FNVIMDELCKNGKMDEASRLLDLMIQIGVRPN--AFVYNTLMDGFCLTGRVNRAKELFVSMESNR--CMHDVFSYSILIN 401 (470)
Q Consensus 326 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~ 401 (470)
|...+..+.+.|++++|...|+.+++..+... ...+-.++..|...|++++|...|+.+.+.. .+.....+-.++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44444444555667777766766666533211 2345556666666666666666666666542 1113344444555
Q ss_pred HHHHcCChhHHHHHHHHHHHC
Q 036577 402 GYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~ 422 (470)
++...|+.++|.++|+++++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 566666666666666666654
No 203
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.26 E-value=0.15 Score=46.76 Aligned_cols=79 Identities=15% Similarity=0.128 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHCCCCC----CHHHHHHHHHH--HHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 036577 374 VNRAKELFVSMESNRCMH----DVFSYSILING--YCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERA 447 (470)
Q Consensus 374 ~~~A~~~~~~~~~~~~~~----~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 447 (470)
+..-..+-+-+.+.|++| +...-|.+.++ +...|++.++.-.-..+. .+.|++.+|..+.-.+....++++|
T Consensus 437 ~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA 514 (549)
T PF07079_consen 437 IPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT--KIAPSPQAYRLLGLCLMENKRYQEA 514 (549)
T ss_pred HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHH
Confidence 333344444445566666 44445555544 556899998887665555 4688999999999999999999999
Q ss_pred HHHHHHH
Q 036577 448 FKLFDEM 454 (470)
Q Consensus 448 ~~~~~~m 454 (470)
..++..+
T Consensus 515 ~~~l~~L 521 (549)
T PF07079_consen 515 WEYLQKL 521 (549)
T ss_pred HHHHHhC
Confidence 9998764
No 204
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.25 E-value=0.11 Score=47.27 Aligned_cols=189 Identities=10% Similarity=0.069 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHc---cC
Q 036577 229 IVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDEN---INPNVVTYNSLIHGFCY---AN 302 (470)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~~ 302 (470)
++..+.+.++...-.... ..+..+...++-.|....+++...++.+.+.... +.....+-....-++.+ .|
T Consensus 120 ~~l~~~L~~i~~rLd~~~---~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~g 196 (374)
T PF13281_consen 120 KELAKELRRIRQRLDDPE---LLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPG 196 (374)
T ss_pred HHHHHHHHHHHHhhCCHh---hcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCC
Confidence 445555566655442111 1222333455556777788888888888877641 11122222233444555 67
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH---------cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCC
Q 036577 303 DWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCK---------NGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGR 373 (470)
Q Consensus 303 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 373 (470)
+.++|+.++..+......+++.+|..+...|-. ....++|+..|.+.-+.. ||...--.++..+...|.
T Consensus 197 dre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 197 DREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGH 274 (374)
T ss_pred CHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCC
Confidence 888888888776555556777777777766532 112555666666555442 343332222222222332
Q ss_pred H----HHHHHHH---HH-HHHCCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 374 V----NRAKELF---VS-MESNRCM---HDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 374 ~----~~A~~~~---~~-~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
- .+..++- .. +.++|.. .+--.+..++.++.-.|+.++|.+..++|...
T Consensus 275 ~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 275 DFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 1 1222222 11 1122211 23333455566666666666666666666643
No 205
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.23 E-value=0.013 Score=48.18 Aligned_cols=89 Identities=25% Similarity=0.297 Sum_probs=72.0
Q ss_pred CCCHhHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCC----------------CHHHHH
Q 036577 320 QPNVVTFNVIMDELCK-----NGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTG----------------RVNRAK 378 (470)
Q Consensus 320 ~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------~~~~A~ 378 (470)
..+-.+|..++..|.+ .|..+=....+..|.+.|+.-|..+|+.|++.+=+.. +-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4577788888888765 4677778888999999999999999999999876421 346678
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 036577 379 ELFVSMESNRCMHDVFSYSILINGYCKNKE 408 (470)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 408 (470)
+++++|...|+.||..++..++..+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 888888888888888888888888876654
No 206
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.32 Score=47.48 Aligned_cols=108 Identities=11% Similarity=0.096 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036577 325 TFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYC 404 (470)
Q Consensus 325 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 404 (470)
+.+--+.-+...|+..+|.++-.+.. -||...|-.-+.+++..+++++-+++-+... .+.-|.-.+.+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 33444444555566666655555443 3566666666666666666666555543332 1233555666677
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 036577 405 KNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLF 451 (470)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 451 (470)
+.|+.++|.+++-+.-. .+ -...+|.+.|++.+|.++.
T Consensus 756 ~~~n~~EA~KYiprv~~---l~------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGG---LQ------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hcccHHHHhhhhhccCC---hH------HHHHHHHHhccHHHHHHHH
Confidence 77777777766655421 11 3456666677777766543
No 207
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.09 E-value=0.078 Score=43.50 Aligned_cols=199 Identities=16% Similarity=0.026 Sum_probs=117.9
Q ss_pred HHhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036577 72 ERFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151 (470)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 151 (470)
....-.|.-+-+.|-..-|+--|.+.+...|. -+..||.+.-.+...|+++.|.+.|+...+.+ +....+...-.-+
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~--m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-p~y~Ya~lNRgi~ 142 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALAIRPD--MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIA 142 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCC--cHHHHHHHHHHHHhcccchHHHHHhhhHhccC-CcchHHHhcccee
Confidence 33334455566677788888889888888876 67889999999999999999999999999875 3333444333344
Q ss_pred HHhcCCcchHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhcCCCCCcchHHHHHHHHHhcCChH
Q 036577 152 FCKMGRVSPGFVVLGRILRSCF-TPDAVTFNSLIKGLCAESRIMEAAALFT-KLKAFGCEPNVITYSTLINGLCRTGHTI 229 (470)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 229 (470)
+.--|++.-|.+-+-..-+... .|-...|--+. -..-++.+|..-+. +... .|..-|...+-.|. .|++.
T Consensus 143 ~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~y-LgkiS 214 (297)
T COG4785 143 LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFY-LGKIS 214 (297)
T ss_pred eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHH-Hhhcc
Confidence 4556888888887777666531 12222232222 23445666655443 3332 35455554443332 22221
Q ss_pred HHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 036577 230 VALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE 282 (470)
Q Consensus 230 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 282 (470)
...+++++.........-...-+.||--+..-+...|+.++|..+|+-....
T Consensus 215 -~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 215 -EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred -HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 1223444433221000000112356777777777888888888888776654
No 208
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.07 E-value=0.15 Score=43.37 Aligned_cols=56 Identities=21% Similarity=0.209 Sum_probs=35.9
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036577 81 DITTITPNEAFCIFDYMLNMRPSPP-PVSSFNILFGCLAKNKHYDTVLSLFKRLNST 136 (470)
Q Consensus 81 ~~~~~~~~~A~~~f~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 136 (470)
.+..|++++|.+.|+.+..+.|..| ...+--.++.++.+.+++++|+...++..+.
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3455677777777777777666522 2344455566666777777777777776655
No 209
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.06 E-value=0.015 Score=50.66 Aligned_cols=99 Identities=15% Similarity=0.075 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----chHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCH
Q 036577 178 VTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNV----ITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNT 253 (470)
Q Consensus 178 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 253 (470)
..|...+..+.+.|++++|...|+.+.+.- |+. ..+..+...|...|++++|...|+.+....+. .+...
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~----s~~~~ 217 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK----SPKAA 217 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----Ccchh
Confidence 445555555566788888888888888752 443 46677788888888888888888888876532 12334
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 036577 254 VTYTTIIDGLCKEGFVDKAKELFLKMKDE 282 (470)
Q Consensus 254 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 282 (470)
..+..+..++...|+.++|.++|+.+.+.
T Consensus 218 dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 218 DAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55555667777788888888888887765
No 210
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.05 E-value=0.023 Score=44.87 Aligned_cols=70 Identities=19% Similarity=0.258 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 036577 325 TFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMES-----NRCMHDVFS 395 (470)
Q Consensus 325 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 395 (470)
....++..+...|++++|..+...+....+- +...|..++.+|...|+...|.++|+.+.. .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445555666666777777777766666433 566666677777777777777666665532 355665544
No 211
>PRK15331 chaperone protein SicA; Provisional
Probab=97.03 E-value=0.0041 Score=48.79 Aligned_cols=86 Identities=10% Similarity=-0.023 Sum_probs=48.2
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchH
Q 036577 82 ITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPG 161 (470)
Q Consensus 82 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 161 (470)
...|++++|..+|.-+...++. +..-|..|..++-..+++++|+..|......+ ..|...+.....++...|+.+.|
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~--n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFY--NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHH
Confidence 3455666666666666555544 45555666666666666666666665544433 23444445555555566666666
Q ss_pred HHHHHHHHh
Q 036577 162 FVVLGRILR 170 (470)
Q Consensus 162 ~~~~~~~~~ 170 (470)
+..|+....
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 665555554
No 212
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.02 E-value=0.0036 Score=42.57 Aligned_cols=56 Identities=13% Similarity=-0.054 Sum_probs=32.5
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 366 DGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 366 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
..|.+.+++++|.++++.++..+ +.+...|.....++.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34555666666666666665553 335555555666666666666666666666544
No 213
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.97 E-value=0.28 Score=44.81 Aligned_cols=119 Identities=16% Similarity=0.099 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHhCCCCCCHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTG---LFPDLYTYNILINCFCK---MGRVSPGFVVLGRILRSCFTPDAVT 179 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~---~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~ 179 (470)
++.+...++-+|....+|+..+++.+.+.... +......-....-++-+ .|+.++|++++..++...-.++..+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 34444556667888899999999999887752 12233333345555666 7889999999988666656778888
Q ss_pred HHHHHHHHHh---------cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 036577 180 FNSLIKGLCA---------ESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTG 226 (470)
Q Consensus 180 ~~~l~~~~~~---------~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 226 (470)
|..+.+.|-. ....++|+..|.+.-+. .|+...--.++..+...|
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g 273 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAG 273 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcC
Confidence 8888887642 12356677777665543 244433333333333344
No 214
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.96 E-value=0.0027 Score=43.89 Aligned_cols=63 Identities=22% Similarity=0.308 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHC----CC-CCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 394 FSYSILINGYCKNKEIEGALSLYSEMLSK----GI-KPD-VVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 394 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
.+|+.+..+|...|++++|++.|++.++. |- .|+ ..++..+...+...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666666666677777777666665532 11 112 34566666777777777777777766653
No 215
>PRK15331 chaperone protein SicA; Provisional
Probab=96.96 E-value=0.089 Score=41.48 Aligned_cols=90 Identities=13% Similarity=0.056 Sum_probs=61.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q 036577 330 MDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEI 409 (470)
Q Consensus 330 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 409 (470)
..-+...|++++|..+|.-+...++. +..-+..|..++-..+++++|...|......+ .-|...+-....+|...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 33445677888888887777766544 55566777777777777888877776654433 22444455567777777888
Q ss_pred hHHHHHHHHHHH
Q 036577 410 EGALSLYSEMLS 421 (470)
Q Consensus 410 ~~A~~~~~~~~~ 421 (470)
+.|...|+..++
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 888887777776
No 216
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.92 E-value=0.29 Score=44.10 Aligned_cols=279 Identities=13% Similarity=0.120 Sum_probs=156.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036577 109 SFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLC 188 (470)
Q Consensus 109 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (470)
+|..+.......|+.+-|..+++ . .|... .-+..+.+.|+.+.| +.+..+.| .||. +|..|+..--
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~----~--Ep~~~---~qVplLL~m~e~e~A---L~kAi~Sg-D~DL-i~~vLl~L~~ 67 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLE----L--EPRAS---KQVPLLLKMGEDELA---LNKAIESG-DTDL-IYLVLLHLKR 67 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHH----c--CCChH---HHHHHHhcCCchHHH---HHHHHHcC-CccH-HHHHHHHHHH
Confidence 46778888889999999988763 2 45543 234555667776666 56666665 4443 4555555433
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCC
Q 036577 189 AESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGF 268 (470)
Q Consensus 189 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 268 (470)
+.. .. +.+ .+... .|.. ..+...|++..+.+.-..+|.+- + .-.......+-.++.. .+
T Consensus 68 ~l~-~s---~f~-~il~~--~p~a---~~l~~~~~r~~~~~~L~~~y~q~---d-------~~~~~a~~~l~~~~~~-~~ 126 (319)
T PF04840_consen 68 KLS-LS---QFF-KILNQ--NPVA---SNLYKKYCREQDRELLKDFYYQE---D-------RFQELANLHLQEALSQ-KD 126 (319)
T ss_pred hCC-HH---HHH-HHHHh--Ccch---HHHHHHHHHhccHHHHHHHHHhc---c-------hHHHHHHHHHHHHHhC-CC
Confidence 322 22 222 33322 1332 34455666766666655555432 1 1111222222222222 33
Q ss_pred HHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH---H-CCCCCCHhHHHHHHHHHHHcCCHHHHH
Q 036577 269 VDKAKELFLKMKDE-NINPNVVTYNSLIHGFCYANDWNEAKCLLIEMM---D-QGVQPNVVTFNVIMDELCKNGKMDEAS 343 (470)
Q Consensus 269 ~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~---~-~~~~~~~~~~~~l~~~~~~~g~~~~a~ 343 (470)
.+.-...+....+. +-..+......++ ++-.++++.-. + .+......+.+..+.-+...|+...|.
T Consensus 127 ~~~~~~~L~~a~~~y~~~k~~~f~~~~~---------e~q~~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~ 197 (319)
T PF04840_consen 127 VEEKISFLKQAQKLYSKSKNDAFEAKLI---------EEQIKLLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAE 197 (319)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHH---------HHHHHHHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHH
Confidence 33333333333221 0001111111111 12222222111 1 111222345566677778899988888
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 036577 344 RLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKG 423 (470)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 423 (470)
++-.+.. -|+...|...+.+++..+++++-.++... +. .+.-|...+.+|.+.|...+|..+..++
T Consensus 198 kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kK---sPIGyepFv~~~~~~~~~~eA~~yI~k~---- 263 (319)
T PF04840_consen 198 KLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---KK---SPIGYEPFVEACLKYGNKKEASKYIPKI---- 263 (319)
T ss_pred HHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CC---CCCChHHHHHHHHHCCCHHHHHHHHHhC----
Confidence 8866663 46899999999999999999988876432 22 3467889999999999999999998772
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 036577 424 IKPDVVIYNTLFIGLFEIHQVERAFKLF 451 (470)
Q Consensus 424 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 451 (470)
+ +..-+..|.+.|++.+|.+..
T Consensus 264 -~-----~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 264 -P-----DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred -C-----hHHHHHHHHHCCCHHHHHHHH
Confidence 2 134556678888888886653
No 217
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.91 E-value=0.3 Score=43.97 Aligned_cols=81 Identities=12% Similarity=0.098 Sum_probs=37.8
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 036577 120 NKHYDTVLSLFKRLNSTGLFPDLY--TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAA 197 (470)
Q Consensus 120 ~~~~~~A~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 197 (470)
.|+++.|.+-|+.|... |... -...|.-...+.|..+.|.+.-++..... +.-...+...+...+..|+++.|+
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHH
Confidence 45555555555555541 2111 11222222334555555555555544331 222345555555555555555555
Q ss_pred HHHHHHH
Q 036577 198 ALFTKLK 204 (470)
Q Consensus 198 ~~~~~~~ 204 (470)
++.+.-+
T Consensus 209 kLvd~~~ 215 (531)
T COG3898 209 KLVDAQR 215 (531)
T ss_pred HHHHHHH
Confidence 5555443
No 218
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.89 E-value=0.008 Score=40.81 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=25.8
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 402 GYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
.|.+.+++++|+++++.++..+.. +...|......+.+.|++++|.+.+++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344455555555555555543211 333444444555555555555555555544
No 219
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.87 E-value=0.013 Score=43.48 Aligned_cols=92 Identities=10% Similarity=-0.028 Sum_probs=75.2
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhc
Q 036577 79 EGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDL---YTYNILINCFCKM 155 (470)
Q Consensus 79 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~ 155 (470)
......|+++.|++.|.+.+..-|. .+.+||.-..++.-+|+.++|++-+++..+..-.... ..|..-...|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~--raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPE--RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhccc--chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 3445678999999999999998887 7889999999999999999999999998876322222 3455556678888
Q ss_pred CCcchHHHHHHHHHhCC
Q 036577 156 GRVSPGFVVLGRILRSC 172 (470)
Q Consensus 156 g~~~~a~~~~~~~~~~~ 172 (470)
|+.+.|..-|+...+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 99999999999888877
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.87 E-value=0.002 Score=44.52 Aligned_cols=68 Identities=21% Similarity=0.243 Sum_probs=48.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCC-CHhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 036577 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEP-NTVTYTTIIDGLCKEGFVDKAKELFLKMKD 281 (470)
Q Consensus 213 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 281 (470)
.+++.+...|...|++++|+..|++..+.....+. ..| ...++..+..++...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD-DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45777888888888888888888887754221111 123 266788888999999999999999987654
No 221
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.79 E-value=0.28 Score=47.04 Aligned_cols=166 Identities=19% Similarity=0.125 Sum_probs=77.4
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHH-----HHHHHHHhCCCHHH
Q 036577 197 AALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYT-----TIIDGLCKEGFVDK 271 (470)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~ 271 (470)
+.-++++++.|-.|+... +...++-.|.+.+|-++|.+--..++ -...|+ -+..-+...|..++
T Consensus 620 i~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enR--------AlEmyTDlRMFD~aQE~~~~g~~~e 688 (1081)
T KOG1538|consen 620 ISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENR--------ALEMYTDLRMFDYAQEFLGSGDPKE 688 (1081)
T ss_pred HHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhh--------HHHHHHHHHHHHHHHHHhhcCChHH
Confidence 344566677776666543 34456667888888888776432221 001111 11222333333333
Q ss_pred HHHHHHHHHh--CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH------HHHCCC---CCCHhHHHHHHHHHHHcCCHH
Q 036577 272 AKELFLKMKD--ENINPNVVTYNSLIHGFCYANDWNEAKCLLIE------MMDQGV---QPNVVTFNVIMDELCKNGKMD 340 (470)
Q Consensus 272 a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~------~~~~~~---~~~~~~~~~l~~~~~~~g~~~ 340 (470)
-..+.++-.+ .+++.. .+....+...|+.++|..+..+ +.+.+. ..+..+...+...+.+...+.
T Consensus 689 KKmL~RKRA~WAr~~keP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~g 764 (1081)
T KOG1538|consen 689 KKMLIRKRADWARNIKEP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPG 764 (1081)
T ss_pred HHHHHHHHHHHhhhcCCc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccc
Confidence 2222221111 011111 1233445566777777655321 111111 122334444444444555566
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 036577 341 EASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMES 386 (470)
Q Consensus 341 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 386 (470)
.|.++|..|-.. ..+++.....+++++|..+-++..+
T Consensus 765 LAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 765 LAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 666666665421 2455666667777777766655443
No 222
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.022 Score=51.21 Aligned_cols=132 Identities=11% Similarity=0.043 Sum_probs=79.8
Q ss_pred HHHhccCCCCccccCChhHHHHHHHHHHhcCCC-------------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036577 71 RERFKSSGEGDITTITPNEAFCIFDYMLNMRPS-------------PPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTG 137 (470)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~-------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~ 137 (470)
+...+..|..+++.|++..|..-|+.++..-.. ..-..+++.+..++.+.+++..|++.-++.+..+
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 345566777888899999999888886553221 0122345566666667777777777776666665
Q ss_pred CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 036577 138 LFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEA-AALFTKLK 204 (470)
Q Consensus 138 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 204 (470)
++|.-....-..++...|+++.|+..|+++++.. +.|-.+-+.|+.+-.+..+..+. .++|..|.
T Consensus 288 -~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 288 -PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred -CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666666666666667777777777777666652 33344444444444444433332 45555554
No 223
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.72 E-value=0.028 Score=51.89 Aligned_cols=65 Identities=15% Similarity=0.050 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036577 105 PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPD-L---YTYNILINCFCKMGRVSPGFVVLGRILRS 171 (470)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~-~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 171 (470)
.+...|+.+..+|.+.|++++|+..|++.++.+ |+ . .+|..+..+|...|+.++|++.+++.++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 478889999999999999999999999988764 44 3 35888999999999999999999998875
No 224
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.32 Score=42.22 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=25.2
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 036577 223 CRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMK 280 (470)
Q Consensus 223 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 280 (470)
...|++.+|..+|+...... +.+...-..++.+|...|+.+.|..++..+.
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-------PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-------cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 34455555555555554443 2233444445555555555555555555443
No 225
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.69 E-value=0.5 Score=43.44 Aligned_cols=130 Identities=19% Similarity=0.185 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHH
Q 036577 179 TFNSLIKGLCAESRIMEAAALFTKLKAFG-CEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYT 257 (470)
Q Consensus 179 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (470)
+|..++....+..-++.|..+|-++.+.| +.+++..+++++.-++ .|+...|..+|+.-...- +.++..-+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-------~d~~~y~~ 470 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-------PDSTLYKE 470 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-------CCchHHHH
Confidence 44555555555566666666666666655 4455666666665554 455566666666544432 22333334
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 036577 258 TIIDGLCKEGFVDKAKELFLKMKDENINPN--VVTYNSLIHGFCYANDWNEAKCLLIEMMDQ 317 (470)
Q Consensus 258 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (470)
..+..+...++-+.|..+|+....+ +..+ ...|..+|..-..-|+...+..+-+.|.+.
T Consensus 471 kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 471 KYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 4455555566666666666644332 1111 345555665555566666555555555443
No 226
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.22 Score=43.13 Aligned_cols=143 Identities=14% Similarity=0.018 Sum_probs=98.6
Q ss_pred CccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 036577 80 GDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159 (470)
Q Consensus 80 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 159 (470)
.....+++.+|..+|.......+. +..+--.++.+|...|+.+.|..++..+....-.........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~--~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE--NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc--cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 456778899999999999988887 566777889999999999999999988766532222223233455666666666
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCcchHHHHHHHHHhcC
Q 036577 160 PGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGC-EPNVITYSTLINGLCRTG 226 (470)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~g 226 (470)
+..++-.+.-.. +.|...-..+...+...|+.++|.+.+-.+.+... .-|...-..++..+.-.|
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 666666665543 44777777888889999999999887777665421 123344455555555444
No 227
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.60 E-value=0.047 Score=41.46 Aligned_cols=51 Identities=14% Similarity=0.055 Sum_probs=35.8
Q ss_pred cCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 036577 249 CEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE-NINPNVVTYNSLIHGFC 299 (470)
Q Consensus 249 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~ 299 (470)
..|+..+..+++.+|+..|++..|+++.+...+. +++.+...|..|+.-..
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5677777777777777777777777777776554 56666677777665443
No 228
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.54 E-value=0.046 Score=41.50 Aligned_cols=52 Identities=15% Similarity=0.089 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCHhHHHHHHHHHH
Q 036577 388 RCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK-GIKPDVVIYNTLFIGLF 439 (470)
Q Consensus 388 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~ 439 (470)
...|+..+..+++.+|+..|++..|+++.+...+. +++.+..+|..|+.=+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34577888888888888888888888888877654 66666778888775433
No 229
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.083 Score=46.30 Aligned_cols=155 Identities=12% Similarity=-0.023 Sum_probs=114.8
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCcc
Q 036577 83 TTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNST---GLFPDLYTYNILINCFCKMGRVS 159 (470)
Q Consensus 83 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~ 159 (470)
..|+..+|-..++++++..|. +..+++..=.++...|+...-...++++... +++-..+....+.-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~Pt--Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPT--DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhCch--hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 457889999999999999887 8889999999999999999999999988765 22222344445556677899999
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHH
Q 036577 160 PGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCE---PNVITYSTLINGLCRTGHTIVALNLFE 236 (470)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~ 236 (470)
+|.+.-++.++.+ +-|...-.++...+-..|++.++.+...+-...--. .-...|=...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999988875 567788888888888999999999877654321000 001112222334566799999999998
Q ss_pred HHHh
Q 036577 237 EMAN 240 (470)
Q Consensus 237 ~~~~ 240 (470)
.-.-
T Consensus 272 ~ei~ 275 (491)
T KOG2610|consen 272 REIW 275 (491)
T ss_pred HHHH
Confidence 7543
No 230
>PRK11906 transcriptional regulator; Provisional
Probab=96.53 E-value=0.25 Score=45.93 Aligned_cols=147 Identities=13% Similarity=0.110 Sum_probs=103.6
Q ss_pred ChhHHHHHHHHHH---hcCCCCCCHHHHHHHHHHHHh---------cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036577 86 TPNEAFCIFDYML---NMRPSPPPVSSFNILFGCLAK---------NKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153 (470)
Q Consensus 86 ~~~~A~~~f~~~~---~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 153 (470)
..+.|+.+|+++. ..+|. ...+|..+..++.. .....+|.++-++..+.+ +.|......+..+..
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~--~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTL--KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcc--cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4678999999999 55554 56666665555443 234557788888888887 778889888888888
Q ss_pred hcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChHH
Q 036577 154 KMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPN---VITYSTLINGLCRTGHTIV 230 (470)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~g~~~~ 230 (470)
-.++++.|..+|++....+ +....+|....-...-.|+.++|.+.+++..+.. |. .......+..|+. ...++
T Consensus 350 ~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs--P~~~~~~~~~~~~~~~~~-~~~~~ 425 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLE--PRRRKAVVIKECVDMYVP-NPLKN 425 (458)
T ss_pred hhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--chhhHHHHHHHHHHHHcC-Cchhh
Confidence 8899999999999998864 4445666666666667999999999999976643 33 2223333445554 44677
Q ss_pred HHHHHHHHH
Q 036577 231 ALNLFEEMA 239 (470)
Q Consensus 231 a~~~~~~~~ 239 (470)
|+++|-+-.
T Consensus 426 ~~~~~~~~~ 434 (458)
T PRK11906 426 NIKLYYKET 434 (458)
T ss_pred hHHHHhhcc
Confidence 777765543
No 231
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.49 E-value=0.56 Score=41.84 Aligned_cols=128 Identities=16% Similarity=0.136 Sum_probs=67.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCCH----
Q 036577 257 TTIIDGLCKEGFVDKAKELFLKMKDE-----NINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ----GVQPNV---- 323 (470)
Q Consensus 257 ~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~---- 323 (470)
.++..++...+.++++++.|+...+. +......++..|-..|.+..|+++|.-...+..+. ++..=.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 34555556666666676666665442 11122345666666667777776666554443321 111001
Q ss_pred -hHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHH
Q 036577 324 -VTFNVIMDELCKNGKMDEASRLLDLMIQI----GVRP-NAFVYNTLMDGFCLTGRVNRAKELFVSM 384 (470)
Q Consensus 324 -~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 384 (470)
.....|.-++...|+...|.+.-++..+. |-++ -......+.+.|...|+.+.|+.-|+..
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 11223344566667766666666654432 3221 1233455667777777777776666553
No 232
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.44 E-value=0.74 Score=42.45 Aligned_cols=84 Identities=17% Similarity=0.235 Sum_probs=59.4
Q ss_pred HHHHHHHHcCCCCC----HhHHHHHHHH--HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 036577 344 RLLDLMIQIGVRPN----AFVYNTLMDG--FCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYS 417 (470)
Q Consensus 344 ~~~~~~~~~~~~~~----~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 417 (470)
.+-+-+.+.|+.|- ...-|.|.++ +...|++.++.-.-..+.+ +.|++.+|..+.-++....++++|.+++.
T Consensus 442 kLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 442 KLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33333445566543 2333444433 4568999998876666655 47899999999999999999999999998
Q ss_pred HHHHCCCCCCHhHHHHH
Q 036577 418 EMLSKGIKPDVVIYNTL 434 (470)
Q Consensus 418 ~~~~~~~~p~~~~~~~l 434 (470)
.+ +|+..++++-
T Consensus 520 ~L-----P~n~~~~dsk 531 (549)
T PF07079_consen 520 KL-----PPNERMRDSK 531 (549)
T ss_pred hC-----CCchhhHHHH
Confidence 65 6777777653
No 233
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.38 E-value=0.96 Score=43.64 Aligned_cols=202 Identities=19% Similarity=0.206 Sum_probs=116.1
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH--
Q 036577 123 YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALF-- 200 (470)
Q Consensus 123 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-- 200 (470)
+-+.+.-++++.++|-.|+... +...++-.|++.+|-++|.+ .|.. |..+.+|.....++.|.+++
T Consensus 616 ~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~~ 683 (1081)
T KOG1538|consen 616 YLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLGS 683 (1081)
T ss_pred HHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhhc
Confidence 3344555567778887677643 34455667777777777754 2221 12233344444444444333
Q ss_pred ----------HHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHH------HHHhcCCCCCcccCCCHhhHHHHHHHHH
Q 036577 201 ----------TKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFE------EMANGNGEIGVVCEPNTVTYTTIIDGLC 264 (470)
Q Consensus 201 ----------~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 264 (470)
++-.+. ..+..-=.+....+...|+..+|..+.- -+.+.++.. ...+..+...+...+-
T Consensus 684 g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl---d~~ere~l~~~a~ylk 758 (1081)
T KOG1538|consen 684 GDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKL---DKAEREPLLLCATYLK 758 (1081)
T ss_pred CChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhc---chhhhhHHHHHHHHHh
Confidence 221111 1122112234455566777777665532 112222111 1344556666666666
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-----------hHHHHHHHHH
Q 036577 265 KEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNV-----------VTFNVIMDEL 333 (470)
Q Consensus 265 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~l~~~~ 333 (470)
+...+.-|-++|..|-+. ..+++.+...++|++|..+-+...+. .||+ .-|...-.+|
T Consensus 759 ~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAf 827 (1081)
T KOG1538|consen 759 KLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAF 827 (1081)
T ss_pred hccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHH
Confidence 777888888998887643 35678889999999999988776543 3332 1234445678
Q ss_pred HHcCCHHHHHHHHHHHHHc
Q 036577 334 CKNGKMDEASRLLDLMIQI 352 (470)
Q Consensus 334 ~~~g~~~~a~~~~~~~~~~ 352 (470)
.+.|+-.+|..+++++...
T Consensus 828 hkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 828 HKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHhcchHHHHHHHHHhhhh
Confidence 8888888888888887654
No 234
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.35 E-value=0.83 Score=42.08 Aligned_cols=129 Identities=16% Similarity=0.260 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHH
Q 036577 324 VTFNVIMDELCKNGKMDEASRLLDLMIQIG-VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSY-SILIN 401 (470)
Q Consensus 324 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~ 401 (470)
..|...+.+-.+..-++.|..+|-+..+.+ ..+++..+++++..++ .|+...|..+|+.-... -||...| +..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 345566666777788889999999998888 5678888899988776 78888999999765554 2344433 55666
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 402 GYCKNKEIEGALSLYSEMLSKGIKPD--VVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
.+...++-+.|..+|+..+++ +..+ ..+|..++.--..-|+...+..+-++|.+
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 778889999999999976653 2223 45888888888888998888877777765
No 235
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.34 E-value=0.43 Score=45.89 Aligned_cols=163 Identities=17% Similarity=0.157 Sum_probs=105.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH------hHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHhH
Q 036577 291 YNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNV------VTFNVIMDELCK----NGKMDEASRLLDLMIQIGVRPNAFV 360 (470)
Q Consensus 291 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 360 (470)
+..++....-.||-+.+++.+.+..+.+---.+ -.|..++..++. ..+.+.|.+++..+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 344566666678888888888776654311111 223344433332 45678899999999886 456555
Q ss_pred HHH-HHHHHHcCCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 036577 361 YNT-LMDGFCLTGRVNRAKELFVSMESNR---CMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFI 436 (470)
Q Consensus 361 ~~~-l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 436 (470)
|.. -.+.+...|++++|.+.|+...... .......+--++.++...++|++|.+.|..+.+..-. +..+|..+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHH
Confidence 543 3466778899999999998765421 1113445666778888999999999999999875322 3444444443
Q ss_pred -HHHhcCCH-------HHHHHHHHHHHH
Q 036577 437 -GLFEIHQV-------ERAFKLFDEMRR 456 (470)
Q Consensus 437 -~~~~~g~~-------~~A~~~~~~m~~ 456 (470)
++...|+. ++|.++|+++..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 33456877 888888888763
No 236
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.33 E-value=0.049 Score=46.57 Aligned_cols=98 Identities=14% Similarity=0.104 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCC--CCCHHHHH
Q 036577 107 VSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFP---DLYTYNILINCFCKMGRVSPGFVVLGRILRSCF--TPDAVTFN 181 (470)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~ 181 (470)
...|+.-+. +.+.|++..|.+.|...++.. +. ....+..|..++...|++++|..+|..+.+.-. +.-...+-
T Consensus 142 ~~~Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 142 TKLYNAALD-LYKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred hHHHHHHHH-HHHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 346665555 456788999999999988763 22 234667788999999999999999999887421 12246677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 036577 182 SLIKGLCAESRIMEAAALFTKLKAF 206 (470)
Q Consensus 182 ~l~~~~~~~g~~~~a~~~~~~~~~~ 206 (470)
-|..+..+.|+.++|...|+++.+.
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 7888888999999999999998875
No 237
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=0.25 Score=41.48 Aligned_cols=54 Identities=13% Similarity=0.057 Sum_probs=25.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 036577 257 TTIIDGLCKEGFVDKAKELFLKMKDE---NINPNVVTYNSLIHGFCYANDWNEAKCLL 311 (470)
Q Consensus 257 ~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 311 (470)
...|-.+....++..|.+.++.-.+. .-..+..+...|+.+| ..||.+++..++
T Consensus 194 va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 194 VAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 33334444445666666666553322 1122444555555554 345555554443
No 238
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.29 E-value=0.11 Score=49.11 Aligned_cols=155 Identities=15% Similarity=0.119 Sum_probs=103.0
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 036577 84 TITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFV 163 (470)
Q Consensus 84 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 163 (470)
.++++++.+..+.- +.-|. .+..-.+.+++.+-+.|..+.|+++-. |.. .-.....+.|+++.|.+
T Consensus 274 ~~d~~~v~~~i~~~-~ll~~-i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 274 RGDFEEVLRMIAAS-NLLPN-IPKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDIALE 339 (443)
T ss_dssp TT-HHH-----HHH-HTGGG---HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHH
T ss_pred cCChhhhhhhhhhh-hhccc-CChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHHHHH
Confidence 45777766655411 11122 235668899999999999999988743 332 22345568899998877
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 036577 164 VLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243 (470)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 243 (470)
+.+. ..+...|..|.....+.|+++-|++.|.+..+ |..|+-.|.-.|+.+.-.++.+.....+
T Consensus 340 ~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~- 403 (443)
T PF04053_consen 340 IAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG- 403 (443)
T ss_dssp HCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-
Confidence 6544 34778999999999999999999999988764 5667777888999988888888777665
Q ss_pred CCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 036577 244 EIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKM 279 (470)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 279 (470)
-++....++...|+.++..+++.+.
T Consensus 404 -----------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 -----------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ------------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred -----------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2455556666678888888777544
No 239
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.29 E-value=0.25 Score=46.73 Aligned_cols=160 Identities=14% Similarity=0.080 Sum_probs=99.6
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036577 220 NGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFC 299 (470)
Q Consensus 220 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 299 (470)
....-.++++++.++.+.-.-.. .-+..-.+.++..+.+.|..+.|+++..+-.. -.....
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-------~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl 329 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-------NIPKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELAL 329 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-------G--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-------cCChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHH
Confidence 33445778888777665221111 11244577888888888888888887643322 234556
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHH
Q 036577 300 YANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKE 379 (470)
Q Consensus 300 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 379 (470)
+.|+.+.|.++..+ ..+...|..|.....+.|+++-|.+.+.+... +..|+-.|.-.|+.+.-.+
T Consensus 330 ~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 330 QLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred hcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence 78888888776543 34677888888888888888888888877642 4556666777888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 036577 380 LFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEM 419 (470)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (470)
+.+.....| -++....++...|+.++..+++.+.
T Consensus 395 l~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 395 LAKIAEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 877776665 2566666677778888887776654
No 240
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.18 E-value=0.17 Score=46.83 Aligned_cols=66 Identities=17% Similarity=0.092 Sum_probs=54.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc----hHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 036577 174 TPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVI----TYSTLINGLCRTGHTIVALNLFEEMANG 241 (470)
Q Consensus 174 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 241 (470)
+.+...++.+..+|...|++++|+..|++..+. .|+.. +|..+..+|...|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456778888888999999999999999888775 46643 4888888899999999999999888764
No 241
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.15 Score=46.15 Aligned_cols=97 Identities=14% Similarity=0.087 Sum_probs=67.2
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036577 323 VVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILING 402 (470)
Q Consensus 323 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 402 (470)
..++..+..+|.+.+++.+|+..-+..++.+.. |...+-.=..++...|+++.|+..|+.+.+.. +-|...-+.++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 345666777888888888888888888877644 66666667778888888888888888887763 3355555556655
Q ss_pred HHHcCChhH-HHHHHHHHHH
Q 036577 403 YCKNKEIEG-ALSLYSEMLS 421 (470)
Q Consensus 403 ~~~~g~~~~-A~~~~~~~~~ 421 (470)
-.+..+..+ ..++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 555554433 3567777764
No 242
>PRK11906 transcriptional regulator; Provisional
Probab=96.12 E-value=0.86 Score=42.53 Aligned_cols=81 Identities=19% Similarity=0.099 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 036577 339 MDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSE 418 (470)
Q Consensus 339 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 418 (470)
..+|.++-++..+.+.. |+.....+..+....|+++.|...|++....+ +....+|......+.-.|+.++|.+.+++
T Consensus 320 ~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 320 AQKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44556666666666544 66666666666666666777777777666653 23445555555556666777777777766
Q ss_pred HHH
Q 036577 419 MLS 421 (470)
Q Consensus 419 ~~~ 421 (470)
..+
T Consensus 398 alr 400 (458)
T PRK11906 398 SLQ 400 (458)
T ss_pred Hhc
Confidence 554
No 243
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.97 E-value=1.6 Score=41.85 Aligned_cols=115 Identities=9% Similarity=0.052 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCcchHHHHHH
Q 036577 88 NEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC-KMGRVSPGFVVLG 166 (470)
Q Consensus 88 ~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~ 166 (470)
+.+..+++.++...|. --.-|......-.+.|..+.+..+|++-+. +++.....|...+.-+. ..|+.+.....|+
T Consensus 62 ~~~r~~y~~fL~kyPl--~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe 138 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPL--CYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFE 138 (577)
T ss_pred HHHHHHHHHHHhhCcc--HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 4555555555555543 344455555555556666666666665554 34444445544443332 2344444455555
Q ss_pred HHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036577 167 RILRS-CFT-PDAVTFNSLIKGLCAESRIMEAAALFTKLKA 205 (470)
Q Consensus 167 ~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 205 (470)
..... |.. -+...|...|..-..++++.....+|+++++
T Consensus 139 ~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 139 RAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 55442 111 1234455555555555556666666665554
No 244
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.96 E-value=0.36 Score=46.37 Aligned_cols=167 Identities=15% Similarity=0.123 Sum_probs=109.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 036577 217 TLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCK----EGFVDKAKELFLKMKDENINPNVVTYN 292 (470)
Q Consensus 217 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 292 (470)
.++....-.||-+.+++.+.+..+..+..+.....-...|...+..++. ....+.|.++++.+... -|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 3444555679999999999988765431110001111234444444443 45678899999999886 46666665
Q ss_pred HH-HHHHHccCCHHHHHHHHHHHHHCCC---CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHH-HH
Q 036577 293 SL-IHGFCYANDWNEAKCLLIEMMDQGV---QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLM-DG 367 (470)
Q Consensus 293 ~l-i~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~ 367 (470)
.. .+.+...|+.++|++.|++...... +.....+--++..+.-.+++++|...+..+.+..- .+..+|.-+. .+
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHHHH
Confidence 44 3566788999999999997654210 12334455667778889999999999999998642 2444454443 33
Q ss_pred HHcCCCH-------HHHHHHHHHHHH
Q 036577 368 FCLTGRV-------NRAKELFVSMES 386 (470)
Q Consensus 368 ~~~~g~~-------~~A~~~~~~~~~ 386 (470)
+...|+. ++|.++|.++..
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 4566777 888888877643
No 245
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.92 E-value=0.93 Score=38.68 Aligned_cols=176 Identities=12% Similarity=0.067 Sum_probs=88.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH--
Q 036577 260 IDGLCKEGFVDKAKELFLKMKDENI--NPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCK-- 335 (470)
Q Consensus 260 ~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 335 (470)
+..-.+.|++++|.+.|+.+..... +-...+.-.++.++.+.+++++|+..+++..+.-.......|...|.+++.
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~ 120 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFF 120 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Confidence 3444567888888888888776521 223445556667777888888888888877765322222234333443332
Q ss_pred -----cCCHH---HHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 036577 336 -----NGKMD---EASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNK 407 (470)
Q Consensus 336 -----~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 407 (470)
..+.. +|..-|+++++. -||. .-...|......+... -...=..+.+.|.+.|
T Consensus 121 ~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS-------------~Ya~dA~~~i~~~~d~----LA~~Em~IaryY~kr~ 181 (254)
T COG4105 121 QIDDVTRDQSAARAAFAAFKELVQR--YPNS-------------RYAPDAKARIVKLNDA----LAGHEMAIARYYLKRG 181 (254)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHH--CCCC-------------cchhhHHHHHHHHHHH----HHHHHHHHHHHHHHhc
Confidence 11222 223333333332 1111 1111111111111100 0011123555677777
Q ss_pred ChhHHHHHHHHHHHCCCCCCH---hHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036577 408 EIEGALSLYSEMLSKGIKPDV---VIYNTLFIGLFEIHQVERAFKLFDEMR 455 (470)
Q Consensus 408 ~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (470)
.+..|..-+++|++. .+-+. ..+-.+..+|...|..++|.+.-+-+.
T Consensus 182 ~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 182 AYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred ChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 777777777777765 22222 234445577777777777766544443
No 246
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.84 E-value=0.49 Score=36.48 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=22.6
Q ss_pred cCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 036577 370 LTGRVNRAKELFVSMESNRC--MHDVFSYSILINGYCKNKEIEGALSLYSEMLS 421 (470)
Q Consensus 370 ~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (470)
+.|++++|.+.|+.+...-. +-....--.++.+|.+.|++++|...+++.++
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34445555555444444310 01223333444444455555555555554444
No 247
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.79 E-value=0.99 Score=38.06 Aligned_cols=107 Identities=7% Similarity=-0.009 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036577 107 VSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKG 186 (470)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (470)
...|..-..+|...+++++|...+.+..+- ...+...| ... ..++.|.-+..++.+. +.-+..|+--..+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-hAA------KayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-HAA------KAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-HHH------HHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 445666666777778888887777665532 11121111 111 1223444444444432 2223445556667
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 036577 187 LCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMA 239 (470)
Q Consensus 187 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 239 (470)
|..+|..+.|-..+++.-+. ...-+.++|+++|++..
T Consensus 101 Y~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqral 137 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRAL 137 (308)
T ss_pred HHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHH
Confidence 77777777766666654331 13445566666666543
No 248
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.78 E-value=0.28 Score=36.74 Aligned_cols=91 Identities=15% Similarity=0.088 Sum_probs=48.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHcCC
Q 036577 332 ELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVF---SYSILINGYCKNKE 408 (470)
Q Consensus 332 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~ 408 (470)
+.+..|+.+.|++.|.+.+..-++ ....||.-..++.-.|+.++|.+-+++..+.....+.. .|-.-...|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 445566666666666666655332 55566666666666666666666665555532122221 12222333445566
Q ss_pred hhHHHHHHHHHHHCC
Q 036577 409 IEGALSLYSEMLSKG 423 (470)
Q Consensus 409 ~~~A~~~~~~~~~~~ 423 (470)
-+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666666555544
No 249
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.76 E-value=0.34 Score=42.67 Aligned_cols=154 Identities=16% Similarity=0.168 Sum_probs=105.9
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH----hHHHHHHHHHHHcCCH
Q 036577 264 CKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNV----VTFNVIMDELCKNGKM 339 (470)
Q Consensus 264 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~ 339 (470)
-..|+..+|-..++++.+. .+.|...+...=.+|...|+.+.-...++++...= .+|. ..-.....++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccc
Confidence 3467888888888888875 56677788888888889999888888888887541 2232 2223344456678999
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 036577 340 DEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESN---RCMHDVFSYSILINGYCKNKEIEGALSLY 416 (470)
Q Consensus 340 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 416 (470)
++|++.-++..+.+.. |...-.++...+--.|+..++.++..+-... +-..-...|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 9999988888877643 6677777777888889999998887654331 00001222333444556678899999998
Q ss_pred HHHH
Q 036577 417 SEML 420 (470)
Q Consensus 417 ~~~~ 420 (470)
+.=+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 8544
No 250
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.72 E-value=2.6 Score=42.22 Aligned_cols=54 Identities=9% Similarity=0.154 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036577 397 SILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEM 454 (470)
Q Consensus 397 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 454 (470)
.-++..+.+..+++.+..+.+..-+ . ++..|..++..+.+.+..+.-.+..+++
T Consensus 709 ~dl~~~~~q~~d~E~~it~~~~~g~---~-~p~l~~~~L~yF~~~~~i~~~~~~v~~v 762 (933)
T KOG2114|consen 709 QDLMLYFQQISDPETVITLCERLGK---E-DPSLWLHALKYFVSEESIEDCYEIVYKV 762 (933)
T ss_pred HHHHHHHHHhhChHHHHHHHHHhCc---c-ChHHHHHHHHHHhhhcchhhHHHHHHHH
Confidence 3466677778888888888777632 3 7888888998888888665555444444
No 251
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.67 E-value=0.26 Score=42.29 Aligned_cols=99 Identities=13% Similarity=0.126 Sum_probs=69.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCC--CCCCHHHH
Q 036577 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDEN--INPNVVTY 291 (470)
Q Consensus 214 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~ 291 (470)
.|+.-+.. .+.|++.+|...|....+..+.. .-....+..|..++...|+++.|..+|..+.+.- .+--+..+
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s----~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal 218 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNS----TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL 218 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCC----cccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence 35555444 45777888888888888877432 2334566778888888888888888888877641 11123556
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHC
Q 036577 292 NSLIHGFCYANDWNEAKCLLIEMMDQ 317 (470)
Q Consensus 292 ~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (470)
--|..+..+.|+.++|...|++..+.
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 66677777888888888888888776
No 252
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.66 E-value=0.77 Score=35.82 Aligned_cols=42 Identities=14% Similarity=0.054 Sum_probs=19.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc
Q 036577 294 LIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKN 336 (470)
Q Consensus 294 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 336 (470)
++..+.+.+........++.+...+ ..+....+.++..|++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 3344444444445555555444443 23444444455544443
No 253
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.65 E-value=0.35 Score=43.11 Aligned_cols=207 Identities=11% Similarity=0.019 Sum_probs=117.0
Q ss_pred HHHHHHHHHHhcCCcchHHHHH----HHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCC---cch
Q 036577 144 TYNILINCFCKMGRVSPGFVVL----GRILRSC-FTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAF-GCEPN---VIT 214 (470)
Q Consensus 144 ~~~~li~~~~~~g~~~~a~~~~----~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-g~~~~---~~~ 214 (470)
++..+..+.++.|.+++++..- +...+.. ..---..|..+.+++-+.-++.+++.+-+.-... |..+. -..
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 4455555566666655544321 1111110 0001234455556666666666666665554332 22221 123
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHh----CCCCCCHHH
Q 036577 215 YSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKD----ENINPNVVT 290 (470)
Q Consensus 215 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~ 290 (470)
..++..++...+.++++++.|+...+.....+. ......++..|...|.+..++++|.-+..+..+ .++..=..-
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D-~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDD-AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC-ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 345667777778889999998887654422110 122345788899999999999998877666543 222211112
Q ss_pred HHH-----HHHHHHccCCHHHHHHHHHHHHH----CCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036577 291 YNS-----LIHGFCYANDWNEAKCLLIEMMD----QGVQP-NVVTFNVIMDELCKNGKMDEASRLLDLMIQ 351 (470)
Q Consensus 291 ~~~-----li~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 351 (470)
|.. |.-++...|....|.+.-++..+ .|-.+ -......+.+.|...|+.+.|+.-|+....
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 222 23345667777777777776544 34222 223456677889999999998888877543
No 254
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.58 E-value=2.6 Score=41.31 Aligned_cols=62 Identities=16% Similarity=0.248 Sum_probs=34.7
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 036577 358 AFVYNTLMDGFCLTGRVNRAKELFVSMESN-RCMHDVFSYSILINGYCKNKEIEGALSLYSEM 419 (470)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (470)
...|..|.+-....|.++.|.+.--.+.+. .+.|....|+.+.-+-+....+...-+.|-++
T Consensus 1021 AyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkL 1083 (1189)
T KOG2041|consen 1021 AYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKL 1083 (1189)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 344455555556678888877654433321 34566777777766655554454444444443
No 255
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.58 E-value=0.42 Score=36.83 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036577 110 FNILFGCLAKNKHYDTVLSLFKRLNSTG--LFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGL 187 (470)
Q Consensus 110 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 187 (470)
+-.-.....+.|++++|.+.|+.+..+- -+-...+-..++.+|.+.+++++|...+++.++........-|...+.++
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 3334444556677777777777766651 01123445556666677777777777777766653222223344444444
Q ss_pred H
Q 036577 188 C 188 (470)
Q Consensus 188 ~ 188 (470)
+
T Consensus 93 ~ 93 (142)
T PF13512_consen 93 S 93 (142)
T ss_pred H
Confidence 3
No 256
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.57 E-value=0.017 Score=32.23 Aligned_cols=32 Identities=13% Similarity=0.399 Sum_probs=26.6
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 036577 94 FDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVL 127 (470)
Q Consensus 94 f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 127 (470)
|+++++.+|. ++.+|+.+...+...|++++|+
T Consensus 2 y~kAie~~P~--n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN--NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC--CHHHHHHHHHHHHHCcCHHhhc
Confidence 5667777776 8889999999999999988885
No 257
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.54 E-value=0.039 Score=32.95 Aligned_cols=39 Identities=15% Similarity=0.108 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 036577 109 SFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148 (470)
Q Consensus 109 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l 148 (470)
+|..+...|.+.|++++|.++|++.++.. +.|...+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 45566666666666666666666666653 4444444433
No 258
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.51 E-value=1.7 Score=38.67 Aligned_cols=166 Identities=11% Similarity=0.062 Sum_probs=81.5
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCcch-------HHHHHHHHHhcC-ChHHHHHHHHHHHhc----CCCCCcccCCC---
Q 036577 188 CAESRIMEAAALFTKLKAFGCEPNVIT-------YSTLINGLCRTG-HTIVALNLFEEMANG----NGEIGVVCEPN--- 252 (470)
Q Consensus 188 ~~~g~~~~a~~~~~~~~~~g~~~~~~~-------~~~l~~~~~~~g-~~~~a~~~~~~~~~~----~~~~~~~~~~~--- 252 (470)
.+.|+++.|..++.+........++.. +..+.......+ ++++|...+++..+. +.... ..++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~--~~~~~~e 81 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDK--LSPDGSE 81 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccc--cCCcHHH
Confidence 356777777777776654321112221 122222333455 777777777666543 11000 1222
Q ss_pred --HhhHHHHHHHHHhCCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHH
Q 036577 253 --TVTYTTIIDGLCKEGFVD---KAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFN 327 (470)
Q Consensus 253 --~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 327 (470)
..++..++.+|...+..+ +|.++++.+.... +-...++..-+..+.+.++.+++.+++.+|+..-.. ....+.
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~ 159 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFD 159 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHH
Confidence 234556666676666543 4555555554432 222344444556666677777777777777765211 223344
Q ss_pred HHHHHHHH--cCCHHHHHHHHHHHHHcCCCCC
Q 036577 328 VIMDELCK--NGKMDEASRLLDLMIQIGVRPN 357 (470)
Q Consensus 328 ~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~ 357 (470)
.++..+.. ......|...+..++...+.|.
T Consensus 160 ~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 160 SILHHIKQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 44443311 1223445555555544434433
No 259
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.50 E-value=0.75 Score=34.66 Aligned_cols=59 Identities=17% Similarity=0.145 Sum_probs=25.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 036577 295 IHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGV 354 (470)
Q Consensus 295 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 354 (470)
+......|+-++-.+++.++.+.+ .+++...-.+..+|.+.|+..++.+++.++-+.|.
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344444555555555555544322 44444455555555555555555555555544443
No 260
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.47 E-value=0.99 Score=35.86 Aligned_cols=122 Identities=16% Similarity=0.124 Sum_probs=52.9
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHH-HHHHH--HHHHHhcCCHH
Q 036577 119 KNKHYDTVLSLFKRLNSTGLFPDLY-TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAV-TFNSL--IKGLCAESRIM 194 (470)
Q Consensus 119 ~~~~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~~g~~~ 194 (470)
+.+..++|+.-|..+.+.|...-+. ..........+.|+...|...|+++-.....|-.. -...| .-.+...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 3444555555555555544221111 11222233445555555555555554432222211 00111 11233455555
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036577 195 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240 (470)
Q Consensus 195 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 240 (470)
+.....+.+-..+-+.-...-..|.-+-.+.|++.+|.+.|..+..
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 5555555554433222223333444444555666666666655544
No 261
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.45 E-value=3 Score=41.22 Aligned_cols=106 Identities=12% Similarity=0.159 Sum_probs=59.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCC
Q 036577 293 SLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTG 372 (470)
Q Consensus 293 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 372 (470)
--+.-+...|+-.+|.++-.+.+ -||-..|-.-+.+++..+++++-+++-.... .+.-|.-...+|.+.|
T Consensus 689 dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~ 758 (829)
T KOG2280|consen 689 DTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQG 758 (829)
T ss_pred HHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcc
Confidence 33444455566666665555544 5566666666666666666665444433322 1344555666666777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 036577 373 RVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYS 417 (470)
Q Consensus 373 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 417 (470)
+.++|.+++.+... . .-...+|.+.|++.+|.++--
T Consensus 759 n~~EA~KYiprv~~-----l----~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 759 NKDEAKKYIPRVGG-----L----QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred cHHHHhhhhhccCC-----h----HHHHHHHHHhccHHHHHHHHH
Confidence 77777666544321 1 145556666676666666543
No 262
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.29 E-value=2 Score=38.20 Aligned_cols=226 Identities=13% Similarity=0.121 Sum_probs=127.1
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCcccCCCHh-----hHHHHHHHHHhCC-CHHHHHHHHHHHHhC--------CCCCCH
Q 036577 223 CRTGHTIVALNLFEEMANGNGEIGVVCEPNTV-----TYTTIIDGLCKEG-FVDKAKELFLKMKDE--------NINPNV 288 (470)
Q Consensus 223 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g-~~~~a~~~~~~~~~~--------~~~~~~ 288 (470)
.+.|+.+.|..++.+....... ..|+.. .+..........+ +++.|..++++..+. ...++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~----~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~ 79 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNS----LDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDG 79 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhc----CCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcH
Confidence 4689999999999998765411 133322 1222223334455 888888887765432 122332
Q ss_pred -----HHHHHHHHHHHccCCHH---HHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhH
Q 036577 289 -----VTYNSLIHGFCYANDWN---EAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFV 360 (470)
Q Consensus 289 -----~~~~~li~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 360 (470)
.++..++.+|...+..+ +|..+++.+.... +-.+..+..-+..+.+.++.+++.+.+.+|+..-.- ....
T Consensus 80 ~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~ 157 (278)
T PF08631_consen 80 SELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESN 157 (278)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccch
Confidence 45677888888887654 5566666665442 223455555577777789999999999999987321 2334
Q ss_pred HHHHHHHH---HcCCCHHHHHHHHHHHHHCCCCCCHHHH-H-HHHHH---HHHcCC------hhHHHHHHHHHHHC-CCC
Q 036577 361 YNTLMDGF---CLTGRVNRAKELFVSMESNRCMHDVFSY-S-ILING---YCKNKE------IEGALSLYSEMLSK-GIK 425 (470)
Q Consensus 361 ~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~-~l~~~---~~~~g~------~~~A~~~~~~~~~~-~~~ 425 (470)
+..++..+ .. .....|...+..++...+.|....| . .++.. ....++ .+...++++..... +.+
T Consensus 158 ~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ 236 (278)
T PF08631_consen 158 FDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQ 236 (278)
T ss_pred HHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCC
Confidence 44444444 33 3345666666666655455544311 1 11111 112222 33344444432221 222
Q ss_pred CCHhH---HHHH----HHHHHhcCCHHHHHHHHHHHH
Q 036577 426 PDVVI---YNTL----FIGLFEIHQVERAFKLFDEMR 455 (470)
Q Consensus 426 p~~~~---~~~l----~~~~~~~g~~~~A~~~~~~m~ 455 (470)
.+..+ ..+| ...+.+.+++++|.++|+-..
T Consensus 237 ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 237 LSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 23222 2222 355678899999999998654
No 263
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.15 E-value=1 Score=34.01 Aligned_cols=65 Identities=11% Similarity=0.104 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 036577 394 FSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGV 459 (470)
Q Consensus 394 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 459 (470)
...+..+..+...|+-|.-.+++.++.+ .-.+++.....+..||.+.|+..++.++++++-+.|+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3444555555666666666666666543 2244555555666666666666666666666666554
No 264
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.01 E-value=1.9 Score=36.52 Aligned_cols=225 Identities=17% Similarity=0.041 Sum_probs=125.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCcccCCCHhhHHHHHHHHHhCC
Q 036577 190 ESRIMEAAALFTKLKAFGCEP-NVITYSTLINGLCRTGHTIVALNLFEEMANG-NGEIGVVCEPNTVTYTTIIDGLCKEG 267 (470)
Q Consensus 190 ~g~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g 267 (470)
.+....+...+.......... ....+......+...+++..+...+...... . .......+......+...+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 109 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELEL------LPNLAEALLNLGLLLEALG 109 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhh------ccchHHHHHHHHHHHHHHh
Confidence 355555666665555432111 2455566666777777777777777776642 1 2455566666666777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHccCCHHHHHHHHHHHHHCCC--CCCHhHHHHHHHHHHHcCCHHHHHH
Q 036577 268 FVDKAKELFLKMKDENINPNVVTYNSLIH-GFCYANDWNEAKCLLIEMMDQGV--QPNVVTFNVIMDELCKNGKMDEASR 344 (470)
Q Consensus 268 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~ 344 (470)
++..+.+.+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 188 (291)
T COG0457 110 KYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALE 188 (291)
T ss_pred hHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHH
Confidence 7777777777776643222 122222222 56677777777777777654211 0122233333334556667777777
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 345 LLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
.+..............+..+...+...++.+.|...+......... ....+..+...+...|..+++...+.+....
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 189 LLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7776666532212455566666666666667777766666654211 1333344444444555566666666666543
No 265
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.67 E-value=4 Score=38.53 Aligned_cols=63 Identities=13% Similarity=0.076 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 036577 359 FVYNTLMDGFCLTGRVNRAKELFVSMESNRCM-HDVFSYSILINGYCKNKEIEGALSLYSEMLS 421 (470)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (470)
.+-..+..++.+.|+.++|.+.++++.+.... .+......|+.++...+.+.++..++.+-.+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 33345666677778888888888887654311 2344566778888888888888888777643
No 266
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.66 E-value=2.4 Score=35.93 Aligned_cols=223 Identities=19% Similarity=0.056 Sum_probs=127.0
Q ss_pred CCcchHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCcchHHHHHHHHHhcCChHHHHH
Q 036577 156 GRVSPGFVVLGRILRSCFT-PDAVTFNSLIKGLCAESRIMEAAALFTKLKAF-GCEPNVITYSTLINGLCRTGHTIVALN 233 (470)
Q Consensus 156 g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~g~~~~a~~ 233 (470)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4455555555555544211 12456666666777777777777777666542 223344555556666666677777777
Q ss_pred HHHHHHhcCCCCCcccCCCHhhHHHHHH-HHHhCCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHccCCHHHHHHH
Q 036577 234 LFEEMANGNGEIGVVCEPNTVTYTTIID-GLCKEGFVDKAKELFLKMKDENI--NPNVVTYNSLIHGFCYANDWNEAKCL 310 (470)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~ 310 (470)
.+........ .+......... .+...|+++.|...++....... ......+......+...++.+.+...
T Consensus 117 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 189 (291)
T COG0457 117 LLEKALALDP-------DPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALEL 189 (291)
T ss_pred HHHHHHcCCC-------CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHH
Confidence 7777765441 11222222233 56677777777777777644211 11233333344445566777777777
Q ss_pred HHHHHHCCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 036577 311 LIEMMDQGVQP-NVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESN 387 (470)
Q Consensus 311 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (470)
+....... +. ....+..+...+...++++.+...+......... ....+..+...+...+..+.+...+......
T Consensus 190 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 190 LEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77776653 22 3455666666777777777777777777665322 2333344444444556677777777666654
No 267
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.66 E-value=1.2 Score=35.05 Aligned_cols=51 Identities=22% Similarity=0.358 Sum_probs=33.3
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036577 84 TITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNST 136 (470)
Q Consensus 84 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 136 (470)
.++.+++..+++.+.-..|..+...++... .+...|+|.+|+++|+++...
T Consensus 23 ~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVLRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred cCChHHHHHHHHHHHHhCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhcc
Confidence 346777777777777777764444444433 345677777777777777655
No 268
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.61 E-value=0.52 Score=41.17 Aligned_cols=78 Identities=18% Similarity=0.176 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCHhHHHH
Q 036577 359 FVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLS-----KGIKPDVVIYNT 433 (470)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~ 433 (470)
.++..++..+..+|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 445667777777777888877777777764 44777777888888888888888777776654 477777776666
Q ss_pred HHHH
Q 036577 434 LFIG 437 (470)
Q Consensus 434 l~~~ 437 (470)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5555
No 269
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.57 E-value=0.15 Score=30.30 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=9.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHH
Q 036577 363 TLMDGFCLTGRVNRAKELFVSMES 386 (470)
Q Consensus 363 ~l~~~~~~~g~~~~A~~~~~~~~~ 386 (470)
.+...|...|++++|+++|+++++
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333344444444444444444433
No 270
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.15 E-value=1.1 Score=38.55 Aligned_cols=104 Identities=20% Similarity=0.274 Sum_probs=67.3
Q ss_pred CCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHH
Q 036577 105 PPVSSFNILFGCLAK-----NKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVT 179 (470)
Q Consensus 105 ~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 179 (470)
.+..+|...+..+.. .+..+-....++.|.+.|+..|..+|+.|++.+-+-. +.|.. +
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~n-v 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQN-V 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHH-H
Confidence 455566666655543 3566667777888999999999999999987754322 12221 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 036577 180 FNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGH 227 (470)
Q Consensus 180 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 227 (470)
+....-.|- .+-+-+++++++|...|+-||-.+-..++.++.+.+.
T Consensus 128 fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 222222221 2234567788888888888888888888888777665
No 271
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.14 E-value=0.5 Score=41.27 Aligned_cols=73 Identities=8% Similarity=0.119 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhhh
Q 036577 393 VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR-----DGVAADTWTY 466 (470)
Q Consensus 393 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~ 466 (470)
..++..++..+...|+.+.+.+.++++...... +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 446778899999999999999999999987544 788999999999999999999999998864 6888876654
No 272
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.12 E-value=4.1 Score=36.43 Aligned_cols=128 Identities=13% Similarity=0.168 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--cC----CHHHHHHHHHHHHHCCC---CCCHhHHHHHHHHHHHcCC---
Q 036577 271 KAKELFLKMKDENINPNVVTYNSLIHGFCY--AN----DWNEAKCLLIEMMDQGV---QPNVVTFNVIMDELCKNGK--- 338 (470)
Q Consensus 271 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~--- 338 (470)
+...+++.+.+.|+.-+..+|-+....... .. ....+..+++.|++... .++...+..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 445555666666666555444432222221 11 23455666666665421 1222333333322 2222
Q ss_pred -HHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHcCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036577 339 -MDEASRLLDLMIQIGVRPN--AFVYNTLMDGFCLTGR--VNRAKELFVSMESNRCMHDVFSYSILI 400 (470)
Q Consensus 339 -~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~ 400 (470)
.+.+..+|+.+.+.|+..+ ......++..+..... ..++.++++.+.+.++++....|..+.
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 2334455555555554422 1222222222221111 335555666666666665555555443
No 273
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.05 E-value=9.2 Score=40.21 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHh
Q 036577 174 TPDAVTFNSLIKGLCAES--RIMEAAALFTKLKA 205 (470)
Q Consensus 174 ~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~ 205 (470)
.|+ .....+|..|.+.+ .+++++....+...
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 344 44455667777766 56677666666654
No 274
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.99 E-value=0.57 Score=40.32 Aligned_cols=89 Identities=15% Similarity=0.175 Sum_probs=69.0
Q ss_pred CCHhhHHHHHHHHHh-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC----------------CHHHHHH
Q 036577 251 PNTVTYTTIIDGLCK-----EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYAN----------------DWNEAKC 309 (470)
Q Consensus 251 ~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----------------~~~~a~~ 309 (470)
.|...|...+..+.. .+.++-....++.|.+.|+.-|..+|+.|+..+-+-. +-+-+++
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 455566666655543 3567777777888999999999999999998765432 3356889
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHHcCCH
Q 036577 310 LLIEMMDQGVQPNVVTFNVIMDELCKNGKM 339 (470)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 339 (470)
++++|...|+.||-.+-..++.++.+.+-.
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 999999999999999999999999887653
No 275
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.73 E-value=8.6 Score=38.78 Aligned_cols=47 Identities=6% Similarity=0.099 Sum_probs=20.5
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 036577 264 CKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLL 311 (470)
Q Consensus 264 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 311 (470)
....+..+-..+++.+.+.|+. +...-..|+.+|.+.++.++..+..
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI 454 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFI 454 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHH
Confidence 3333344444444444444432 3333344455555555544444433
No 276
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.73 E-value=0.17 Score=28.48 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=10.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHH
Q 036577 396 YSILINGYCKNKEIEGALSLYSE 418 (470)
Q Consensus 396 ~~~l~~~~~~~g~~~~A~~~~~~ 418 (470)
|..|...|.+.|++++|++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444444444444444444
No 277
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.71 E-value=0.18 Score=27.80 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 430 IYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 430 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
+|..+...+...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555555556666666666655554
No 278
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.64 E-value=2.7 Score=32.71 Aligned_cols=24 Identities=4% Similarity=0.130 Sum_probs=9.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 036577 113 LFGCLAKNKHYDTVLSLFKRLNST 136 (470)
Q Consensus 113 l~~~~~~~~~~~~A~~~~~~m~~~ 136 (470)
++..+...+.+......++.+...
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~ 36 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKL 36 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHcc
Confidence 333333333444444444444333
No 279
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.50 E-value=0.21 Score=28.15 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 430 IYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 430 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
+|..|...|.+.|++++|++++++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 477899999999999999999999653
No 280
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.39 E-value=1.4 Score=36.00 Aligned_cols=17 Identities=18% Similarity=0.079 Sum_probs=10.7
Q ss_pred hcCChHHHHHHHHHHHh
Q 036577 224 RTGHTIVALNLFEEMAN 240 (470)
Q Consensus 224 ~~g~~~~a~~~~~~~~~ 240 (470)
..+++.+|-+.|-....
T Consensus 125 ~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 125 AQRDFKEAAELFLDSLS 141 (177)
T ss_pred HhchHHHHHHHHHccCc
Confidence 45677777766666543
No 281
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.33 E-value=7.4 Score=36.84 Aligned_cols=57 Identities=12% Similarity=0.108 Sum_probs=28.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHH
Q 036577 328 VIMDELCKNGKMDEASRLLDLMIQIGVRP-NAFVYNTLMDGFCLTGRVNRAKELFVSM 384 (470)
Q Consensus 328 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 384 (470)
.+..++-+.|+.++|++.++++.+..... +......|+.++...+.+.++..++.+-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 34444455555555555555555432211 2223444555555555555555555554
No 282
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.23 E-value=3.4 Score=32.66 Aligned_cols=112 Identities=18% Similarity=0.078 Sum_probs=59.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCh
Q 036577 331 DELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCK-NKEI 409 (470)
Q Consensus 331 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~ 409 (470)
..-.+.++.+++..++..+.-..+. ....-..-...+...|++.+|+.+|+++.+.. |....-..|+..|.. .|+.
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCCh
Confidence 3445677888888888888776443 22222233445667899999999998887653 322222333333333 3332
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 036577 410 EGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFK 449 (470)
Q Consensus 410 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 449 (470)
.=...-+++.+.+-.|+.. .|+..+....+...|..
T Consensus 95 -~Wr~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 95 -SWRRYADEVLESGADPDAR---ALVRALLARADLEPAHE 130 (160)
T ss_pred -HHHHHHHHHHhcCCChHHH---HHHHHHHHhccccchhh
Confidence 2222334455544333332 44555555544444433
No 283
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.19 E-value=1.5 Score=35.81 Aligned_cols=97 Identities=11% Similarity=0.056 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC---CCCCCHhHHHH
Q 036577 359 FVYNTLMDGFCLTGRVNRAKELFVSMESNRCMH--DVFSYSILINGYCKNKEIEGALSLYSEMLSK---GIKPDVVIYNT 433 (470)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~ 433 (470)
..+..++..|.+.|+.+.|.+.|.++.+....+ -...+-.+|......|++..+.....+.... |..++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 345566666666677777777766666553333 2334455666666666666666666554432 11111111111
Q ss_pred HH--HHHHhcCCHHHHHHHHHHHH
Q 036577 434 LF--IGLFEIHQVERAFKLFDEMR 455 (470)
Q Consensus 434 l~--~~~~~~g~~~~A~~~~~~m~ 455 (470)
.. -++...|++.+|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 11 23345677777777765543
No 284
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.19 E-value=3.7 Score=32.91 Aligned_cols=135 Identities=13% Similarity=0.152 Sum_probs=71.5
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 036577 309 CLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNR 388 (470)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 388 (470)
+.+..+.+.+++|+...+..++..+.+.|++.. +..++..++-+|.......+-.+. +....+.++--.|...
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 444455566677777777777777777776543 333444444455544443332222 2222333333333221
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036577 389 CMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRD 457 (470)
Q Consensus 389 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (470)
-...+..+++.+...|++-+|+++.+..... +......++.+....+|...-..+++-+.+.
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 0113556667777778887877777664221 1222244566666666666655555555543
No 285
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.09 E-value=0.26 Score=27.06 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 430 IYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 430 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
.|..+...+...|++++|++.+++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555566666666666666666654
No 286
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.05 E-value=3.8 Score=32.72 Aligned_cols=133 Identities=11% Similarity=0.046 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHh-HHHHH--
Q 036577 289 VTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVV-TFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAF-VYNTL-- 364 (470)
Q Consensus 289 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l-- 364 (470)
..|..-++ ..+.+..++|+.-|.++.+.|...-+. ....+.....+.|+-..|...|+++-.....|-.. -...|
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 34444333 245566677777777777655322111 11222334556677777777777776654333322 11111
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 365 MDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
.-.+...|.++......+-+...+-+.....-..|.-+-.+.|++.+|..+|..+...
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 1223456666666666555544443333444455666666777777777777766653
No 287
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.99 E-value=14 Score=38.99 Aligned_cols=78 Identities=19% Similarity=0.275 Sum_probs=36.7
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHh--HHHHHHHHHHHcC
Q 036577 260 IDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVV--TFNVIMDELCKNG 337 (470)
Q Consensus 260 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g 337 (470)
..-+...+.+++|.-.|+..-+. .--+.+|..+|+|.+|+.+..++... .+.. +-..|+.-+...+
T Consensus 946 a~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~ 1013 (1265)
T KOG1920|consen 946 ADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQR 1013 (1265)
T ss_pred HHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcc
Confidence 33334455566665555444321 12345566666666666665554321 1111 1134444455555
Q ss_pred CHHHHHHHHHHH
Q 036577 338 KMDEASRLLDLM 349 (470)
Q Consensus 338 ~~~~a~~~~~~~ 349 (470)
++-+|-++..+.
T Consensus 1014 kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 1014 KHYEAAKILLEY 1025 (1265)
T ss_pred cchhHHHHHHHH
Confidence 555554444443
No 288
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.93 E-value=11 Score=37.71 Aligned_cols=99 Identities=9% Similarity=0.042 Sum_probs=61.3
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 036577 84 TITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFV 163 (470)
Q Consensus 84 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 163 (470)
.+.+++|+..-+......+.......+..++..+.-.|++++|-...-.|... +..-|...+..+...++....
T Consensus 369 ~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~~I-- 442 (846)
T KOG2066|consen 369 KKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLTDI-- 442 (846)
T ss_pred hhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccchh--
Confidence 34577777766655443332123556788888888889999988888888753 566777777777766665432
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh
Q 036577 164 VLGRILRSCFTPDAVTFNSLIKGLCA 189 (470)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (470)
+.-+.......+..+|..++..+..
T Consensus 443 -a~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 443 -APYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred -hccCCCCCcccCchHHHHHHHHHHH
Confidence 2222222112355677777776665
No 289
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.73 E-value=2.8 Score=40.38 Aligned_cols=100 Identities=15% Similarity=0.104 Sum_probs=55.9
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHH
Q 036577 299 CYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAK 378 (470)
Q Consensus 299 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 378 (470)
.+.|+++.|.++..+. .+..-|..|..+....+++..|.+.|.+... |..|+-.+...|+-+...
T Consensus 648 l~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 4556666666554442 2455666777777777777776666665542 334444555566655544
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 036577 379 ELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEM 419 (470)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (470)
.+-....+.| ..|....+|...|+++++.+++.+-
T Consensus 713 ~la~~~~~~g------~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 713 VLASLAKKQG------KNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHhhc------ccchHHHHHHHcCCHHHHHHHHHhc
Confidence 4444444433 1233344566677777777765543
No 290
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.55 E-value=7.5 Score=34.81 Aligned_cols=132 Identities=12% Similarity=0.179 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH--cC----CHHHHHHHHHHHHHcCCC---CCHhHHHHHHHHHHcCCC-
Q 036577 304 WNEAKCLLIEMMDQGVQPNVVTFNVIMDELCK--NG----KMDEASRLLDLMIQIGVR---PNAFVYNTLMDGFCLTGR- 373 (470)
Q Consensus 304 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~- 373 (470)
+++...+++.+.+.|+.-+..+|-+....... .. ....|..+++.|.+..+- ++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556777888888877776665543332222 22 356788899999887442 345556655543 3333
Q ss_pred ---HHHHHHHHHHHHHCCCCC-CH-HHHHHHHHHHHHcCC--hhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 036577 374 ---VNRAKELFVSMESNRCMH-DV-FSYSILINGYCKNKE--IEGALSLYSEMLSKGIKPDVVIYNTLFIG 437 (470)
Q Consensus 374 ---~~~A~~~~~~~~~~~~~~-~~-~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 437 (470)
.+.++.+|+.+.+.|... |. ...+.++..+..... ...+.++++.+.+.|+++....|..+.-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 356778888888877665 33 333333332222222 44678888899888888877776655433
No 291
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.32 E-value=4.9 Score=32.19 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=13.3
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCc
Q 036577 132 RLNSTGLFPDLYTYNILINCFCKMGRV 158 (470)
Q Consensus 132 ~m~~~~~~~~~~~~~~li~~~~~~g~~ 158 (470)
.+.+.+++|+...+..++..+.+.|++
T Consensus 19 Sl~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 19 SLNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 333444455555555555555555543
No 292
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.21 E-value=13 Score=36.84 Aligned_cols=274 Identities=14% Similarity=0.072 Sum_probs=168.6
Q ss_pred cchHHHHHHHHHhCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHh-------cCCCCCcchHHHHHHHHHhc
Q 036577 158 VSPGFVVLGRILRSCFTPDAVTFNSLIKG-----LCAESRIMEAAALFTKLKA-------FGCEPNVITYSTLINGLCRT 225 (470)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~-------~g~~~~~~~~~~l~~~~~~~ 225 (470)
...|.++++...+.| +...-..+..+ +....+.+.|+..|+.+.+ .| .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 356888888888876 33333333333 3456789999999998876 44 444666777777764
Q ss_pred C-----ChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHh-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036577 226 G-----HTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCK-EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFC 299 (470)
Q Consensus 226 g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 299 (470)
. +.+.|..++......+ .|+.......+..... ..+...|.++|...-..|.. ..+-.+..+|.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-------~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~ 371 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-------NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYE 371 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-------CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHH
Confidence 3 6677999999998877 5665554444433333 34678999999999988742 33333333332
Q ss_pred ----ccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH----Hc-
Q 036577 300 ----YANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGF----CL- 370 (470)
Q Consensus 300 ----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~- 370 (470)
...+.+.|..++.+..+.| .|...--...+..+.. ++++.+...+..+.+.+.. ...+-...+..- ..
T Consensus 372 ~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~ 448 (552)
T KOG1550|consen 372 LGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFS 448 (552)
T ss_pred hCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccc
Confidence 2347889999999999887 3332222222333333 7888888777777776654 222222221111 11
Q ss_pred ---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----CChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH----
Q 036577 371 ---TGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKN----KEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLF---- 439 (470)
Q Consensus 371 ---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~---- 439 (470)
..+.+.+...+.+....| +......+.+.|... .+++.|...+.....++ ...+|+ +...+.
T Consensus 449 ~~~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~n-lg~~~e~g~g 521 (552)
T KOG1550|consen 449 RGVISTLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFN-LGYMHEHGEG 521 (552)
T ss_pred cccccchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhh-hhhHHhcCcC
Confidence 225677777777777666 666667777766554 35788888888877765 222332 221111
Q ss_pred hcCCHHHHHHHHHHHHHcC
Q 036577 440 EIHQVERAFKLFDEMRRDG 458 (470)
Q Consensus 440 ~~g~~~~A~~~~~~m~~~g 458 (470)
..+ +..|.+++++..+.+
T Consensus 522 ~~~-~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 522 IKV-LHLAKRYYDQASEED 539 (552)
T ss_pred cch-hHHHHHHHHHHHhcC
Confidence 223 678888888877543
No 293
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.06 E-value=2.7 Score=40.40 Aligned_cols=134 Identities=14% Similarity=0.094 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036577 107 VSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKG 186 (470)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (470)
....+.++..+.++|-.++|+++- +|.... .....+.|+++.|.++..+. .+..-|..|.+.
T Consensus 614 k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~ 675 (794)
T KOG0276|consen 614 KEIRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDLAVEA------NSEVKWRQLGDA 675 (794)
T ss_pred hhhhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHH
Confidence 345567777777888777776642 332221 22335678888887776653 366778889999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhC
Q 036577 187 LCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKE 266 (470)
Q Consensus 187 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 266 (470)
....+++..|.+.|.+... |..|+-.+...|+.+....+-....+.+ ..| .-.-+|...
T Consensus 676 al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-------~~N-----~AF~~~~l~ 734 (794)
T KOG0276|consen 676 ALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-------KNN-----LAFLAYFLS 734 (794)
T ss_pred HhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-------ccc-----hHHHHHHHc
Confidence 9999999999988877654 4456667777788776666666665554 222 233456677
Q ss_pred CCHHHHHHHHHHH
Q 036577 267 GFVDKAKELFLKM 279 (470)
Q Consensus 267 g~~~~a~~~~~~~ 279 (470)
|+++++.+++..-
T Consensus 735 g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 735 GDYEECLELLIST 747 (794)
T ss_pred CCHHHHHHHHHhc
Confidence 8888888877543
No 294
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.91 E-value=13 Score=36.07 Aligned_cols=305 Identities=13% Similarity=0.051 Sum_probs=159.5
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCc
Q 036577 82 ITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLA-KNKHYDTVLSLFKRLNST-GLF-PDLYTYNILINCFCKMGRV 158 (470)
Q Consensus 82 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~m~~~-~~~-~~~~~~~~li~~~~~~g~~ 158 (470)
.+.|..+.+.++|++.+..-|. ++..|......+. ..|+.+...++|+..... |.. .....|...|.--..++++
T Consensus 90 ~klg~~~~s~~Vfergv~aip~--SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~ 167 (577)
T KOG1258|consen 90 YKLGNAENSVKVFERGVQAIPL--SVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSW 167 (577)
T ss_pred HHhhhHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccH
Confidence 4578889999999999886664 7888877766554 557888888888887654 211 2344677777777777888
Q ss_pred chHHHHHHHHHhCCCCCCHHHHHHHHHHHH---hcC------CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChH
Q 036577 159 SPGFVVLGRILRSCFTPDAVTFNSLIKGLC---AES------RIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTI 229 (470)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g------~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 229 (470)
.....+++++++. ...-|+....-|. ... ..+++.++-...... ..-...++..
T Consensus 168 k~v~~iyeRilei----P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~-------------~~~~~~~~~~ 230 (577)
T KOG1258|consen 168 KRVANIYERILEI----PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAER-------------SKITHSQEPL 230 (577)
T ss_pred HHHHHHHHHHHhh----hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhh-------------hhcccccChh
Confidence 8888888888864 2223333222221 111 111111111111100 0000111111
Q ss_pred HHHHHHHHHHhcCCCCCcccCCCHhhHHHHHH-------HHHhCCCHHHHHHHHHHHHhC---CC----CCCHHHHHHHH
Q 036577 230 VALNLFEEMANGNGEIGVVCEPNTVTYTTIID-------GLCKEGFVDKAKELFLKMKDE---NI----NPNVVTYNSLI 295 (470)
Q Consensus 230 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~g~~~~a~~~~~~~~~~---~~----~~~~~~~~~li 295 (470)
+-.+ ..+...... .+.-....+.+-. ++-..-...+....|+.-... .+ .++..+|...+
T Consensus 231 e~~~--~~v~~~~~~----s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yL 304 (577)
T KOG1258|consen 231 EELE--IGVKDSTDP----SKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYL 304 (577)
T ss_pred HHHH--HHHhhccCc----cchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHh
Confidence 1111 111111100 0111111111111 111222233333334333332 11 23456777778
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHH
Q 036577 296 HGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVN 375 (470)
Q Consensus 296 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 375 (470)
.--.+.|+.+.+.-+|+...--- ..=...|-..+.-....|+.+-|..++....+.-.+-.+.+--.-....-..|+++
T Consensus 305 df~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~ 383 (577)
T KOG1258|consen 305 DFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFD 383 (577)
T ss_pred hhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHH
Confidence 88888889988888888776321 11123344444444455888888888877766544322222222222233468999
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCChhHHHH
Q 036577 376 RAKELFVSMESNRCMHDV-FSYSILINGYCKNKEIEGALS 414 (470)
Q Consensus 376 ~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 414 (470)
.|..+++.+.+.- |+. ..-..-+....+.|..+.+..
T Consensus 384 ~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 384 DAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhH
Confidence 9999999887764 432 222333445566788777773
No 295
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=91.63 E-value=12 Score=35.36 Aligned_cols=99 Identities=10% Similarity=0.160 Sum_probs=74.7
Q ss_pred CCCHhHH-HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cCChhHHHHHHHHHHHC-CCCCCHhH
Q 036577 355 RPNAFVY-NTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCK--NKEIEGALSLYSEMLSK-GIKPDVVI 430 (470)
Q Consensus 355 ~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~-~~~p~~~~ 430 (470)
.|+..++ +.+++.+.+.|-..+|..++..+.... +|+...|..+++.-.. .-+...+.++++.|... | .|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 3444443 567788888999999999999988763 6688888888765322 23378888899888764 5 58888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 431 YNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 431 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
|...+.--...|..+.+-.++.++.+
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHH
Confidence 88888777789999998888877764
No 296
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.29 E-value=18 Score=36.46 Aligned_cols=47 Identities=9% Similarity=0.116 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 036577 107 VSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155 (470)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 155 (470)
...| .+|-.|.++|++++|.++..+.... .......+...+..|...
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 3456 4566778899999999988555433 344455667777777654
No 297
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.21 E-value=0.3 Score=27.12 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=20.0
Q ss_pred CCCHhhHHHHHHHHHhCCCHHHHH
Q 036577 250 EPNTVTYTTIIDGLCKEGFVDKAK 273 (470)
Q Consensus 250 ~~~~~~~~~l~~~~~~~g~~~~a~ 273 (470)
+-+...|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 667888888888888888888875
No 298
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.67 E-value=20 Score=36.09 Aligned_cols=198 Identities=16% Similarity=0.136 Sum_probs=94.0
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHHh-CCCCCC--HHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCCCcc--
Q 036577 140 PDLYTYNILINCFCKMGRVSPGFVVLGRILR-SCFTPD--AVTFNSLIKGLC-AESRIMEAAALFTKLKAFGCEPNVI-- 213 (470)
Q Consensus 140 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~--~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~g~~~~~~-- 213 (470)
.+...|..||.. |++.++.+.+ ..++|. ..++-.+...+. ...+++.|+..+++.....-.++..
T Consensus 28 ~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 28 EQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 344555555533 3444555552 222332 334445555555 4667777777777654432222211
Q ss_pred ---hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHH-HHHHHhCCCHHHHHHHHHHHHhCC---CCC
Q 036577 214 ---TYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTI-IDGLCKEGFVDKAKELFLKMKDEN---INP 286 (470)
Q Consensus 214 ---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~---~~~ 286 (470)
.-..++..+.+.+... |...+++..+.....+ ..+-...+..+ +..+...+++..|.+.++.+...- ..|
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~--~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~ 175 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYG--HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDP 175 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccC--chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCH
Confidence 1123445555555555 7777777655442110 01122222222 222223367777777777665431 223
Q ss_pred CHHHHHHHHHHHH--ccCCHHHHHHHHHHHHHCC---------CCCCHhHHHHHHHHH--HHcCCHHHHHHHHHHH
Q 036577 287 NVVTYNSLIHGFC--YANDWNEAKCLLIEMMDQG---------VQPNVVTFNVIMDEL--CKNGKMDEASRLLDLM 349 (470)
Q Consensus 287 ~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~ 349 (470)
-..++..++.+.. +.+..+++.+.++.+.... ..|...+|..++..+ ...|+++.+...++++
T Consensus 176 ~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 176 AVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444444332 4455566666666553221 123445555555533 4566655655555444
No 299
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.35 E-value=5 Score=35.40 Aligned_cols=102 Identities=19% Similarity=0.212 Sum_probs=53.2
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC---CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHh
Q 036577 283 NINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQG---VQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAF 359 (470)
Q Consensus 283 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 359 (470)
|.+....+...++..-....+++.+...+-++.... ..++. +-...+..+ -.-++++++.++..=+..|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 333344444445544445556666666665554321 01111 111122222 2234556666666666666666777
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 036577 360 VYNTLMDGFCLTGRVNRAKELFVSMES 386 (470)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 386 (470)
+++.+++.+.+.+++.+|..+.-.|..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 777777777777766666666555443
No 300
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.22 E-value=17 Score=34.58 Aligned_cols=92 Identities=12% Similarity=0.152 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 036577 289 VTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGF 368 (470)
Q Consensus 289 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 368 (470)
....+++..+.++..+.-...+..+|...| .+-..|..++.+|... ..++-..+++++.+..+. |...-..|+..|
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y 142 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY 142 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH
Confidence 334444444444444444444555554442 1333444444555444 333444455544444332 322223333333
Q ss_pred HcCCCHHHHHHHHHHHH
Q 036577 369 CLTGRVNRAKELFVSME 385 (470)
Q Consensus 369 ~~~g~~~~A~~~~~~~~ 385 (470)
-+ ++.+++..+|..+.
T Consensus 143 Ek-ik~sk~a~~f~Ka~ 158 (711)
T COG1747 143 EK-IKKSKAAEFFGKAL 158 (711)
T ss_pred HH-hchhhHHHHHHHHH
Confidence 22 44444444444443
No 301
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.20 E-value=1.5 Score=38.86 Aligned_cols=98 Identities=11% Similarity=0.000 Sum_probs=72.8
Q ss_pred hccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036577 74 FKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153 (470)
Q Consensus 74 ~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 153 (470)
++-.|..++++|++++|+..|.......|. ++.++..-..+|.+.++|..|..-....+..+ ..-...|..-+.+--
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~--NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPH--NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARE 176 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCC--CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHH
Confidence 455678899999999999999998887775 78888888899999999988877777666543 222335555555556
Q ss_pred hcCCcchHHHHHHHHHhCCCCCC
Q 036577 154 KMGRVSPGFVVLGRILRSCFTPD 176 (470)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~ 176 (470)
..|...+|.+-.+..++. .|+
T Consensus 177 ~Lg~~~EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 177 SLGNNMEAKKDCETVLAL--EPK 197 (536)
T ss_pred HHhhHHHHHHhHHHHHhh--Ccc
Confidence 667777777777777764 454
No 302
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.09 E-value=5.4 Score=37.37 Aligned_cols=86 Identities=12% Similarity=0.032 Sum_probs=39.0
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 036577 334 CKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGAL 413 (470)
Q Consensus 334 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 413 (470)
...|.++.+...+...... +.....+..++++...+.|++++|...-..|....+. +........-..-..|-+|++.
T Consensus 334 ~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHH
Confidence 4455555555555444332 1123344445555555555555555555555444322 2222222222233344455555
Q ss_pred HHHHHHHH
Q 036577 414 SLYSEMLS 421 (470)
Q Consensus 414 ~~~~~~~~ 421 (470)
-.|+++..
T Consensus 412 ~~wk~~~~ 419 (831)
T PRK15180 412 HYWKRVLL 419 (831)
T ss_pred HHHHHHhc
Confidence 55555543
No 303
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.86 E-value=5.8 Score=32.59 Aligned_cols=92 Identities=18% Similarity=0.144 Sum_probs=64.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 036577 330 MDELCKNGKMDEASRLLDLMIQIGVRPN----AFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCK 405 (470)
Q Consensus 330 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 405 (470)
..-+...|++++|..-|..++..-+... ...|..-..++.+.+.++.|+.-....++.+ +........-..+|.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHh
Confidence 4456778889999888888888743222 2344455566778888888888887777765 2233444444567888
Q ss_pred cCChhHHHHHHHHHHHC
Q 036577 406 NKEIEGALSLYSEMLSK 422 (470)
Q Consensus 406 ~g~~~~A~~~~~~~~~~ 422 (470)
...+++|++=|+++.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 88888888888888876
No 304
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.85 E-value=0.95 Score=26.15 Aligned_cols=26 Identities=35% Similarity=0.408 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHH
Q 036577 395 SYSILINGYCKNKEIEGALSLYSEML 420 (470)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 420 (470)
+++.+...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44445555555555555555554443
No 305
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.84 E-value=3.9 Score=33.70 Aligned_cols=20 Identities=10% Similarity=0.051 Sum_probs=8.3
Q ss_pred CHhHHHHHHHHHHHcCCHHH
Q 036577 322 NVVTFNVIMDELCKNGKMDE 341 (470)
Q Consensus 322 ~~~~~~~l~~~~~~~g~~~~ 341 (470)
|+..+.+|+..+.+.|+++.
T Consensus 177 n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred CHHHHHHHHHHHHHhcchhh
Confidence 33444444444444444433
No 306
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.63 E-value=6.3 Score=32.51 Aligned_cols=75 Identities=16% Similarity=0.131 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC---CCCCCHhHHHHHHHHHHhcCCHHHHH
Q 036577 373 RVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK---GIKPDVVIYNTLFIGLFEIHQVERAF 448 (470)
Q Consensus 373 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~ 448 (470)
.-+.|.+.|-.+...+..-++.....+...|. ..+.++++.++.+.++. +-.+|+..+.+|+..+.+.|+++.|.
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 33677777777777665556666666665555 56788888888877753 33677888888888888888888874
No 307
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.58 E-value=1.2 Score=24.42 Aligned_cols=29 Identities=31% Similarity=0.343 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 394 FSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 394 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
.+|..+..+|...|++++|+..|++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46778888888899999999988888764
No 308
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.54 E-value=23 Score=35.10 Aligned_cols=77 Identities=14% Similarity=0.039 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcC----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCh
Q 036577 338 KMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLT----GRVNRAKELFVSMESNRCMHDVFSYSILINGYCK----NKEI 409 (470)
Q Consensus 338 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 409 (470)
+.+.+...+......| +......+.+.|..- .+.+.|...+......+ ....-.+...+-. .. +
T Consensus 454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~ 525 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-L 525 (552)
T ss_pred chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-h
Confidence 3444555555554443 334444444444322 23555655555554443 2222222222211 22 5
Q ss_pred hHHHHHHHHHHHC
Q 036577 410 EGALSLYSEMLSK 422 (470)
Q Consensus 410 ~~A~~~~~~~~~~ 422 (470)
..|.+++++..+.
T Consensus 526 ~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 526 HLAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHHhc
Confidence 5666666666544
No 309
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.31 E-value=12 Score=31.33 Aligned_cols=179 Identities=14% Similarity=0.114 Sum_probs=101.8
Q ss_pred cCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH
Q 036577 225 TGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDW 304 (470)
Q Consensus 225 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 304 (470)
.|-+.-|.--|.+..... +.-+.+||.+.-.+...|+++.|.+.|+...+.+..-+-...|.-| ++.-.|++
T Consensus 78 lGL~~LAR~DftQaLai~-------P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~ 149 (297)
T COG4785 78 LGLRALARNDFSQALAIR-------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRY 149 (297)
T ss_pred hhHHHHHhhhhhhhhhcC-------CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCch
Confidence 444455555555555544 4456788888888899999999999999998874332222222222 23356888
Q ss_pred HHHHHHHHHHHHCCCCCCHh--HHHHHHHHHHHcCCHHHHHHH-HHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHH
Q 036577 305 NEAKCLLIEMMDQGVQPNVV--TFNVIMDELCKNGKMDEASRL-LDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELF 381 (470)
Q Consensus 305 ~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 381 (470)
.-|.+-+...-+.+ +.|+. .|--+. .+.-++.+|..- .++.... |..-|...+-.|. .|.+.+ ..++
T Consensus 150 ~LAq~d~~~fYQ~D-~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~y-LgkiS~-e~l~ 219 (297)
T COG4785 150 KLAQDDLLAFYQDD-PNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFY-LGKISE-ETLM 219 (297)
T ss_pred HhhHHHHHHHHhcC-CCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHH-HhhccH-HHHH
Confidence 88887777766553 33332 222222 233355555543 3344332 4344433333222 233221 2233
Q ss_pred HHHHHCCCCC-------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 382 VSMESNRCMH-------DVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 382 ~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
+++.... .. -..||--+..-+...|+.++|..+|+-.+..
T Consensus 220 ~~~~a~a-~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 220 ERLKADA-TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHhhc-cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 3333211 11 2346677788888899999999999988765
No 310
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.04 E-value=1.1 Score=25.92 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036577 108 SSFNILFGCLAKNKHYDTVLSLFKRLNS 135 (470)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 135 (470)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566777777777777777777776543
No 311
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.96 E-value=1.2 Score=24.29 Aligned_cols=28 Identities=18% Similarity=0.291 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 395 SYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
.|..+..++...|++++|++.|++.++.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4555666666777777777777666643
No 312
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.93 E-value=0.81 Score=25.06 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 430 IYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 430 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
+|..+...+...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555556666666666655554
No 313
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.85 E-value=0.57 Score=36.71 Aligned_cols=52 Identities=8% Similarity=0.112 Sum_probs=21.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHH
Q 036577 114 FGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVL 165 (470)
Q Consensus 114 ~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 165 (470)
+..+.+.+.++....+++.+...+...+....+.++..|++.++.++...++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 3344444444444444444444332333444444444444444444443333
No 314
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.66 E-value=9.9 Score=29.64 Aligned_cols=53 Identities=11% Similarity=0.117 Sum_probs=34.1
Q ss_pred HHcCCHHHHHHHHHHHHHcCCC-CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 036577 334 CKNGKMDEASRLLDLMIQIGVR-PNAFVYNTLMDGFCLTGRVNRAKELFVSMESNR 388 (470)
Q Consensus 334 ~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 388 (470)
...++.+++..++..|.-..++ +...++. ...+...|++++|.++|+++.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccC
Confidence 4577788888888877765433 1222333 334566788888888888877654
No 315
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.46 E-value=13 Score=30.59 Aligned_cols=92 Identities=8% Similarity=0.016 Sum_probs=51.2
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 036577 365 MDGFCLTGRVNRAKELFVSMESNRCMHD--VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIH 442 (470)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 442 (470)
...+..+|++++|..-++.........+ ...--.|.......|.+|+|+..++...+.++. ......-.+++...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcC
Confidence 4456667777777777766554310101 111223445566677777777777665543322 222233346677777
Q ss_pred CHHHHHHHHHHHHHcC
Q 036577 443 QVERAFKLFDEMRRDG 458 (470)
Q Consensus 443 ~~~~A~~~~~~m~~~g 458 (470)
+-++|+.-|++..+.+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 7777777777776654
No 316
>PRK11619 lytic murein transglycosylase; Provisional
Probab=88.44 E-value=30 Score=34.97 Aligned_cols=116 Identities=5% Similarity=-0.051 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHHcC-CCCC--HhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 036577 337 GKMDEASRLLDLMIQIG-VRPN--AFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGAL 413 (470)
Q Consensus 337 g~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 413 (470)
.+.+.|..++....... ..+. ..+...+.......+...+|...++...... .+......-+..-...++++.+.
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHH
Confidence 34566666666653332 1111 1122333333333322445555544433221 13333444444445667777766
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036577 414 SLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMR 455 (470)
Q Consensus 414 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (470)
..+..|-... .-...-..-+..++...|+.++|..+|+++.
T Consensus 333 ~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 333 TWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 6666664321 1123333345566666777777777776653
No 317
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.20 E-value=9.1 Score=33.87 Aligned_cols=106 Identities=19% Similarity=0.151 Sum_probs=59.4
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 036577 207 GCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINP 286 (470)
Q Consensus 207 g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 286 (470)
|.+....+...++..-....+++.+..++-++....... ..++ .+-...++.+. .-+.++++.++..-.+.|+-|
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~---~~~~-~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAW---YLRN-WTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchh---hhcc-ccHHHHHHHHH-ccChHHHHHHHhCcchhcccc
Confidence 444555555555555555666666666666665432110 0111 11122222222 234556666666666677777
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 036577 287 NVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ 317 (470)
Q Consensus 287 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (470)
|-.+++.+++.+.+.+++.+|..+...|+.+
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 7777777777777777777777766666544
No 318
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.16 E-value=17 Score=31.86 Aligned_cols=71 Identities=14% Similarity=0.108 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCChhhh
Q 036577 395 SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMR-----RDGVAADTWTY 466 (470)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~ 466 (470)
+++.....|..+|.+.+|.++-++.+..+ +.+...|..|+..+...|+--.|.+-++++. +.|+..|...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 34566678889999999999999988653 3366778888899999999888888888775 45777665544
No 319
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.07 E-value=5.3 Score=32.79 Aligned_cols=96 Identities=15% Similarity=0.101 Sum_probs=46.9
Q ss_pred ccCCCCccccCChhHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036577 75 KSSGEGDITTITPNEAFCIFDYMLNMRPSPPP---VSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151 (470)
Q Consensus 75 ~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 151 (470)
+.-|...+..|++++|..-|..++..-|..+. ...|..-..++.+.+.++.|+.-..+.++.+ +........-..+
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAea 177 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEA 177 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHH
Confidence 33444455556666666666665555443111 2234444455555566666655555555543 2222233333444
Q ss_pred HHhcCCcchHHHHHHHHHhC
Q 036577 152 FCKMGRVSPGFVVLGRILRS 171 (470)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~ 171 (470)
|.+...+++|+.-|..+...
T Consensus 178 yek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHh
Confidence 55555555555555555543
No 320
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.98 E-value=22 Score=32.77 Aligned_cols=65 Identities=14% Similarity=0.014 Sum_probs=34.6
Q ss_pred CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 036577 252 NTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINP---NVVTYNSLIHGFCYANDWNEAKCLLIEMMD 316 (470)
Q Consensus 252 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (470)
...+|..++..+.+.|.++.|...+..+...+... .......-+...-..|+..+|+..++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456666666666666666666666655532111 222333334445555666666666655554
No 321
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=87.98 E-value=31 Score=34.47 Aligned_cols=62 Identities=11% Similarity=0.054 Sum_probs=25.1
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 036577 322 NVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSME 385 (470)
Q Consensus 322 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (470)
+......++..|.+.|-.+.|.++.+.+-..-. ...-|..-+..+.++|+...+..+.+.+.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444555666667777777776666665544322 12334455555666666655555544444
No 322
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.97 E-value=11 Score=29.39 Aligned_cols=50 Identities=22% Similarity=0.402 Sum_probs=20.8
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036577 84 TITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNS 135 (470)
Q Consensus 84 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 135 (470)
.++++++..+++.+.-..|..+...++...+ +...|++.+|+++|+++..
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLS 72 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhc
Confidence 3444444444444444444433333332222 2334444444444444443
No 323
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=87.73 E-value=16 Score=31.04 Aligned_cols=127 Identities=17% Similarity=0.141 Sum_probs=85.7
Q ss_pred HHhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHH
Q 036577 72 ERFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDL-YTYNILIN 150 (470)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~li~ 150 (470)
+.++-.|..+.....++.|+..+...+..+|. .+.-|..-+.++.+.++++.+..--.+.++. .|+. .....+..
T Consensus 11 ~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~--~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~ 86 (284)
T KOG4642|consen 11 EQLKEQGNKCFIPKRYDDAIDCYSRAICINPT--VASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQ 86 (284)
T ss_pred HHHHhccccccchhhhchHHHHHHHHHhcCCC--cchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHH
Confidence 34455666677777899999999888888876 4566777788888889998887777776665 4443 34555667
Q ss_pred HHHhcCCcchHHHHHHHHHh----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036577 151 CFCKMGRVSPGFVVLGRILR----SCFTPDAVTFNSLIKGLCAESRIMEAAALFTK 202 (470)
Q Consensus 151 ~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 202 (470)
+......+++|+..+.+... ..+++-......|..+--..=.+.+..++.++
T Consensus 87 ~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 87 WLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 77788888899888887743 33444455666666554444444455554444
No 324
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.21 E-value=5.5 Score=28.30 Aligned_cols=45 Identities=11% Similarity=0.115 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036577 271 KAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMM 315 (470)
Q Consensus 271 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 315 (470)
++.+-++.+...++.|++.+..+.+++|.+.+|+..|.++|+-.+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 445555555555666666666666666666666666666666555
No 325
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.63 E-value=4.5 Score=33.68 Aligned_cols=75 Identities=15% Similarity=0.122 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 036577 111 NILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSC--FTPDAVTFNSLIKG 186 (470)
Q Consensus 111 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 186 (470)
+..+..+.+.++.++|+.+.++-.+.. +.|...-..+++.+|-.|++++|..-++-.-+.. ..+-...|..+|++
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 444556666777777777777666654 4455566667777777777777766655554421 22334555555544
No 326
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.61 E-value=6 Score=28.44 Aligned_cols=47 Identities=13% Similarity=0.144 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 036577 271 KAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ 317 (470)
Q Consensus 271 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (470)
+..+-++.+...++.|++.+..+.+.+|.+.+|+..|.++|+.++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45555666666667777777777777777777777777777766554
No 327
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=86.35 E-value=26 Score=31.94 Aligned_cols=146 Identities=11% Similarity=-0.008 Sum_probs=99.0
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCC------------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 036577 93 IFDYMLNMRPSPPPVSSFNILFGCLAKNKH------------YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSP 160 (470)
Q Consensus 93 ~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 160 (470)
-|+..++.+|. |+.+|-.++..--..-. .+.-+.++++.++.+ +.+...+..++..+.+..+.++
T Consensus 7 el~~~v~~~P~--di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~ 83 (321)
T PF08424_consen 7 ELNRRVRENPH--DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEK 83 (321)
T ss_pred HHHHHHHhCcc--cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHH
Confidence 35556666665 88899888865443322 355688889888874 5677788888899998888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhc------CC----CCCcch-------HHHHHH
Q 036577 161 GFVVLGRILRSCFTPDAVTFNSLIKGLCA---ESRIMEAAALFTKLKAF------GC----EPNVIT-------YSTLIN 220 (470)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~------g~----~~~~~~-------~~~l~~ 220 (470)
..+.+++++... +-+...|...+..... .-.++....+|.+.... |. .+...+ +..+..
T Consensus 84 l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~ 162 (321)
T PF08424_consen 84 LAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCR 162 (321)
T ss_pred HHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHH
Confidence 888999998863 4467788888776654 23466666666654321 11 011111 223334
Q ss_pred HHHhcCChHHHHHHHHHHHhcC
Q 036577 221 GLCRTGHTIVALNLFEEMANGN 242 (470)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~~~~~ 242 (470)
.+.+.|..+.|..+++.+.+-+
T Consensus 163 fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 163 FLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHCCchHHHHHHHHHHHHHH
Confidence 4567899999999999998766
No 328
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=86.26 E-value=72 Score=36.95 Aligned_cols=62 Identities=19% Similarity=0.103 Sum_probs=49.0
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 358 AFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
..+|....+...+.|.++.|....-...+.+ -...+--.+..+...|+...|+.++++-++.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 4677888888888999999988876666654 3345666778889999999999999988864
No 329
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.95 E-value=0.32 Score=38.14 Aligned_cols=84 Identities=13% Similarity=0.197 Sum_probs=44.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 036577 329 IMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKE 408 (470)
Q Consensus 329 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 408 (470)
++..+.+.+.++....+++.+...+...+....+.++..|++.+..++..++++. . +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~---~----~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT---S----NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS---S----SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc---c----cccCHHHHHHHHHhcch
Confidence 3444555556666666666666554444556666666666666555555555541 1 11222345555555666
Q ss_pred hhHHHHHHHHH
Q 036577 409 IEGALSLYSEM 419 (470)
Q Consensus 409 ~~~A~~~~~~~ 419 (470)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666555544
No 330
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.90 E-value=8.2 Score=27.45 Aligned_cols=45 Identities=13% Similarity=0.154 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 036577 341 EASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSME 385 (470)
Q Consensus 341 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (470)
++.+-++.+...+..|++....+.+++|.+.+++..|.++|+.+.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444455555555555666666666666666666666666665554
No 331
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=85.79 E-value=24 Score=31.07 Aligned_cols=113 Identities=11% Similarity=0.089 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHcc-C-CHHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHHcCCHHHHHH
Q 036577 269 VDKAKELFLKMKD-ENINPNVVTYNSLIHGFCYA-N-DWNEAKCLLIEMMDQ-GVQPNVVTFNVIMDELCKNGKMDEASR 344 (470)
Q Consensus 269 ~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~-~-~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~ 344 (470)
+.+|+++|+.... ..+--|..+...+++..... + ....-.++.+-+... +..++..+...++..++..+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4556666653221 12334555555555555441 1 222222333333221 235555666666667777777777666
Q ss_pred HHHHHHHc-CCCCCHhHHHHHHHHHHcCCCHHHHHHHH
Q 036577 345 LLDLMIQI-GVRPNAFVYNTLMDGFCLTGRVNRAKELF 381 (470)
Q Consensus 345 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 381 (470)
+++..... +..-|...|..++......|+..-..++.
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 66665554 44556666777777777777755554444
No 332
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=85.68 E-value=7.6 Score=31.37 Aligned_cols=95 Identities=9% Similarity=0.016 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHhcCCCCCCHHHHHH---HHHHHHhcCChHHHHHHHHH-------HHhCCCCCC-HHHHHHHHHHHHhc
Q 036577 87 PNEAFCIFDYMLNMRPSPPPVSSFNI---LFGCLAKNKHYDTVLSLFKR-------LNSTGLFPD-LYTYNILINCFCKM 155 (470)
Q Consensus 87 ~~~A~~~f~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~A~~~~~~-------m~~~~~~~~-~~~~~~li~~~~~~ 155 (470)
++.|++.++.....+|. +...++. .+.-+++..+..++..++++ .+.. .|+ ..++..+..++...
T Consensus 7 FE~ark~aea~y~~nP~--DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL--DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH--hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHH
Confidence 56788888887777776 6665443 44444444444445455444 4443 343 45666666666554
Q ss_pred CC-----------cchHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036577 156 GR-----------VSPGFVVLGRILRSCFTPDAVTFNSLIKGL 187 (470)
Q Consensus 156 g~-----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 187 (470)
+. +++|.+.|++.... .|+..+|+.-+.+.
T Consensus 83 A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 83 AFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 42 33333344444333 45555665555544
No 333
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.44 E-value=7.6 Score=34.74 Aligned_cols=90 Identities=11% Similarity=-0.058 Sum_probs=56.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHH
Q 036577 185 KGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLC 264 (470)
Q Consensus 185 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 264 (470)
.-|.++|.+++|+..|....... +.|.+++..-..+|.+...+..|..-.......+ ..-+..|..-+.+-.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-------~~Y~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-------KLYVKAYSRRMQARE 176 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-------HHHHHHHHHHHHHHH
Confidence 34677788888888887766532 2377777777777887777777777666665544 223344444444444
Q ss_pred hCCCHHHHHHHHHHHHhC
Q 036577 265 KEGFVDKAKELFLKMKDE 282 (470)
Q Consensus 265 ~~g~~~~a~~~~~~~~~~ 282 (470)
..|...+|.+-++..+..
T Consensus 177 ~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 177 SLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHhhHHHHHHhHHHHHhh
Confidence 556666666666665553
No 334
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.24 E-value=26 Score=30.88 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 036577 88 NEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLF 130 (470)
Q Consensus 88 ~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 130 (470)
..|+++|..++...+. .+ +-+.++..+....+..+|...+
T Consensus 150 ~KA~ELFayLv~hkgk--~v-~~~~~ie~lwpe~D~kka~s~l 189 (361)
T COG3947 150 RKALELFAYLVEHKGK--EV-TSWEAIEALWPEKDEKKASSLL 189 (361)
T ss_pred hHHHHHHHHHHHhcCC--cc-cHhHHHHHHccccchhhHHHHH
Confidence 4566666666655443 12 2234455555555555554444
No 335
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=85.03 E-value=50 Score=34.02 Aligned_cols=320 Identities=13% Similarity=0.057 Sum_probs=165.7
Q ss_pred HHHHHHHHHHhCCCC-------CCHHHHHHHHHHHHhc----CCcchHHHHHHHHH----hCCCCCCHHHHHHHHHHHHh
Q 036577 125 TVLSLFKRLNSTGLF-------PDLYTYNILINCFCKM----GRVSPGFVVLGRIL----RSCFTPDAVTFNSLIKGLCA 189 (470)
Q Consensus 125 ~A~~~~~~m~~~~~~-------~~~~~~~~li~~~~~~----g~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~ 189 (470)
....+++++...|+. +.-+-|..+..-+.+. +...+..+++.... ..| -|+. -|.-..+
T Consensus 299 ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g-~~~e-----AI~hAla 372 (894)
T COG2909 299 NGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRELAARLKELHRAAAEWFAEHG-LPSE-----AIDHALA 372 (894)
T ss_pred cHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccccCCchhHHHHHHHHHHHhCC-ChHH-----HHHHHHh
Confidence 466777887777643 2344555555444332 22334444444332 233 2222 3344556
Q ss_pred cCCHHHHHHHHHHHHhc---------------CCCCCcchH----HHHHHH--HHhcCChHHHHHHHHHHHhcCCCCCcc
Q 036577 190 ESRIMEAAALFTKLKAF---------------GCEPNVITY----STLING--LCRTGHTIVALNLFEEMANGNGEIGVV 248 (470)
Q Consensus 190 ~g~~~~a~~~~~~~~~~---------------g~~~~~~~~----~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~ 248 (470)
.|+++.|-.++++.... ++| +.... -.+..+ .....++.+|..+..++...-+..+
T Consensus 373 A~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP-~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~-- 449 (894)
T COG2909 373 AGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALP-AELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPM-- 449 (894)
T ss_pred CCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCC-HHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCc--
Confidence 78888887777765110 121 11111 112222 3457889999999988876543211
Q ss_pred cCCCHh---hHHHHH-HHHHhCCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 036577 249 CEPNTV---TYTTII-DGLCKEGFVDKAKELFLKMKDE----NINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQ 320 (470)
Q Consensus 249 ~~~~~~---~~~~l~-~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 320 (470)
..+... .++.+- ......|++++|.++-+..... -..+....+..+..+..-.|++++|..+..+..+..-.
T Consensus 450 ~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~ 529 (894)
T COG2909 450 HSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQ 529 (894)
T ss_pred ccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 111111 233332 2233478889999888877654 22345667777888888899999999998777654222
Q ss_pred CCHhH---HHHH--HHHHHHcCCH--HHHHHHHHHHHHcC--CC----CCHhHHHHHHHHHHcC-CCHHHHHHHHHHHHH
Q 036577 321 PNVVT---FNVI--MDELCKNGKM--DEASRLLDLMIQIG--VR----PNAFVYNTLMDGFCLT-GRVNRAKELFVSMES 386 (470)
Q Consensus 321 ~~~~~---~~~l--~~~~~~~g~~--~~a~~~~~~~~~~~--~~----~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 386 (470)
-+... |..+ ...+...|+. .+....+....... -+ +-..+...++.++.+. +...++..-+.--..
T Consensus 530 ~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~ 609 (894)
T COG2909 530 HDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSV 609 (894)
T ss_pred cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhh
Confidence 23332 3333 2245566733 33333333333220 01 1223344455555441 112222222222222
Q ss_pred CCCCCCHHH--HHHHHHHHHHcCChhHHHHHHHHHHHCCCC----CCHhHHHHHHH--HHHhcCCHHHHHHHHHH
Q 036577 387 NRCMHDVFS--YSILINGYCKNKEIEGALSLYSEMLSKGIK----PDVVIYNTLFI--GLFEIHQVERAFKLFDE 453 (470)
Q Consensus 387 ~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----p~~~~~~~l~~--~~~~~g~~~~A~~~~~~ 453 (470)
....|-... +..|+.+....|+.++|...++++...... ++...-...+. ....+|+.+++.....+
T Consensus 610 ~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 610 YTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred cccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 222222222 236788888999999999999988764322 22222222222 23457888888777655
No 336
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.84 E-value=3.1 Score=22.62 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 036577 395 SYSILINGYCKNKEIEGALSLYSEMLS 421 (470)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (470)
+|..+...|...|++++|.+.|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566777778888888888888877764
No 337
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.66 E-value=9.4 Score=31.90 Aligned_cols=76 Identities=16% Similarity=0.106 Sum_probs=48.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC--CCCCCHHHHH
Q 036577 215 YSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE--NINPNVVTYN 292 (470)
Q Consensus 215 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~ 292 (470)
.+.-++.+.+.+...+++...+.-.+.. +.|..+-..++..+|-.|++++|..-++-.-.. ...+....|.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-------Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr 76 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-------PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYR 76 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-------CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHH
Confidence 3444566667777777777777766655 556666777777777788888777766655443 2223445555
Q ss_pred HHHHH
Q 036577 293 SLIHG 297 (470)
Q Consensus 293 ~li~~ 297 (470)
.+|.+
T Consensus 77 ~lir~ 81 (273)
T COG4455 77 HLIRC 81 (273)
T ss_pred HHHHH
Confidence 55543
No 338
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.63 E-value=33 Score=31.58 Aligned_cols=67 Identities=15% Similarity=0.073 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC---CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036577 286 PNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQP---NVVTFNVIMDELCKNGKMDEASRLLDLMIQI 352 (470)
Q Consensus 286 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 352 (470)
....+|..++..+.+.|.++.|...+..+...+... .+.....-+...-..|+..+|+..++.....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345677888888888888888888888887643211 2334444456666778888888888887773
No 339
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.57 E-value=1.7 Score=23.35 Aligned_cols=23 Identities=13% Similarity=0.348 Sum_probs=11.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 036577 434 LFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 434 l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
+..++.+.|++++|.+.|+++++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 33444444555555555555443
No 340
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=84.24 E-value=14 Score=28.22 Aligned_cols=64 Identities=13% Similarity=0.034 Sum_probs=27.7
Q ss_pred CHhHHHHHHHHHHcCCC---HHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 036577 357 NAFVYNTLMDGFCLTGR---VNRAKELFVSMESNRCMH--DVFSYSILINGYCKNKEIEGALSLYSEMLS 421 (470)
Q Consensus 357 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (470)
+..+--.+..++.+..+ ..+.+.+++.+.+.. .| .....--|.-++.+.|++++++++.+.+++
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 33333344444444332 334445555554411 11 222222333445555555555555555554
No 341
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.09 E-value=1.7 Score=23.36 Aligned_cols=25 Identities=16% Similarity=0.387 Sum_probs=16.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 398 ILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 398 ~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
.+..++.+.|++++|.+.|+++++.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4555666677777777777776654
No 342
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=83.28 E-value=10 Score=30.72 Aligned_cols=78 Identities=12% Similarity=0.131 Sum_probs=54.3
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC-----------ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 036577 86 TPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNK-----------HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK 154 (470)
Q Consensus 86 ~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 154 (470)
-+++|+.-|+.++..+|. ...++..+..++...+ .|++|.+.|++.... .|+..+|..-+...
T Consensus 50 miedAisK~eeAL~I~P~--~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~-- 123 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPN--KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA-- 123 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH--
Confidence 368899999999999987 5666666666665543 256666677766665 79999999888876
Q ss_pred cCCcchHHHHHHHHHhCCC
Q 036577 155 MGRVSPGFVVLGRILRSCF 173 (470)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~ 173 (470)
.+|-+++.++.+.+.
T Consensus 124 ----~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 124 ----AKAPELHMEIHKQGL 138 (186)
T ss_dssp ----HTHHHHHHHHHHSSS
T ss_pred ----HhhHHHHHHHHHHHh
Confidence 357788888877653
No 343
>PRK09687 putative lyase; Provisional
Probab=83.02 E-value=34 Score=30.47 Aligned_cols=217 Identities=15% Similarity=0.101 Sum_probs=103.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc----chHHHHHHHHHhCCCCCCHHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV----SPGFVVLGRILRSCFTPDAVTFN 181 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~~~~~~~~~~~~~~~ 181 (470)
+.......+..+...|. +++...+..+.. .+|...-...+.++.+.|+. +++...+..+... .++..+-.
T Consensus 36 d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 36 NSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 55555556666666664 334444444443 34556666666677777653 3455555555332 34555554
Q ss_pred HHHHHHHhcCC-----HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhH
Q 036577 182 SLIKGLCAESR-----IMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTY 256 (470)
Q Consensus 182 ~l~~~~~~~g~-----~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (470)
..+.++...+. ...+...+..... .++..+-...+.++.+.++ +++...+-.+... ++..+-
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---------~~~~VR 176 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---------PNGDVR 176 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---------CCHHHH
Confidence 45555444332 1122333322222 1344444445555555554 3444555554432 233344
Q ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH
Q 036577 257 TTIIDGLCKEG-FVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCK 335 (470)
Q Consensus 257 ~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 335 (470)
...+.++.+.+ +...+...+..+.. .++..+....+.++.+.++ ..+...+-+..+.+ + .....+.++..
T Consensus 177 ~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ 247 (280)
T PRK09687 177 NWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGE 247 (280)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHh
Confidence 44444444432 13344444444443 2355555556666666665 34444444444432 1 12344555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 036577 336 NGKMDEASRLLDLMIQ 351 (470)
Q Consensus 336 ~g~~~~a~~~~~~~~~ 351 (470)
.|.. +|...+..+.+
T Consensus 248 ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 248 LGDK-TLLPVLDTLLY 262 (280)
T ss_pred cCCH-hHHHHHHHHHh
Confidence 5553 45555555554
No 344
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.90 E-value=25 Score=28.94 Aligned_cols=116 Identities=9% Similarity=0.049 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHH--HHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHcCCCHHHHHHHH
Q 036577 306 EAKCLLIEMMDQGVQPNVVTFNV--IMDELCKNGKMDEASRLLDLMIQIGVRPN--AFVYNTLMDGFCLTGRVNRAKELF 381 (470)
Q Consensus 306 ~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~ 381 (470)
+.....+++...........+.. +...+...+++++|..-++.........+ ..+--.|.+.....|.+++|...+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44445555554421222222332 34467788899999988888775421111 112234556677889999999988
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 036577 382 VSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKG 423 (470)
Q Consensus 382 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 423 (470)
+.....+. .......-.+.+...|+-++|..-|++.++.+
T Consensus 150 ~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 150 DTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 87766431 22334455677888999999999999888765
No 345
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=82.84 E-value=62 Score=33.39 Aligned_cols=199 Identities=15% Similarity=0.112 Sum_probs=113.5
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHH-HHHccCCHHHHHHHHHHHHHC----CCCCCHhHHHHHH
Q 036577 263 LCKEGFVDKAKELFLKMKDENINPNV-------VTYNSLIH-GFCYANDWNEAKCLLIEMMDQ----GVQPNVVTFNVIM 330 (470)
Q Consensus 263 ~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 330 (470)
.....++++|..++.++...-..|+. ..++.+-. .....|+++.|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34568899999998887654222221 12333322 234578899999988877654 2234456677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHhHH---HHH--HHHHHcCCCH--HHHHHHHHHHHHC---CC---CCCHHHHH
Q 036577 331 DELCKNGKMDEASRLLDLMIQIGVRPNAFVY---NTL--MDGFCLTGRV--NRAKELFVSMESN---RC---MHDVFSYS 397 (470)
Q Consensus 331 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~l--~~~~~~~g~~--~~A~~~~~~~~~~---~~---~~~~~~~~ 397 (470)
.+..-.|++++|..+..+..+..-+-+...+ ..+ ...+..+|.. .+.+..|...... .. .+-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 8888899999999998877665333333333 222 2335566733 3333334333221 10 12234455
Q ss_pred HHHHHHHH-cCChhHHHHHHHHHHHCCCCCCHhHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 036577 398 ILINGYCK-NKEIEGALSLYSEMLSKGIKPDVVIY--NTLFIGLFEIHQVERAFKLFDEMRRDGVAA 461 (470)
Q Consensus 398 ~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 461 (470)
.+..++.+ .+...++..-++-.......|-..-. ..|+......|+.++|...+.++......+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 56666655 22233333333333333222222222 356788888999999999999998654444
No 346
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.80 E-value=31 Score=29.94 Aligned_cols=188 Identities=13% Similarity=0.116 Sum_probs=118.2
Q ss_pred ccCChhHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC---CC--CCCHHHHHHHHHHHHhc
Q 036577 83 TTITPNEAFCIFDYMLNMRPSPP--PVSSFNILFGCLAKNKHYDTVLSLFKRLNST---GL--FPDLYTYNILINCFCKM 155 (470)
Q Consensus 83 ~~~~~~~A~~~f~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~---~~--~~~~~~~~~li~~~~~~ 155 (470)
....+++|+.-|..+++..+... .-.+...++....+.+++++....|.+|+.. .+ .-+..+.+.++.--+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 44589999999999999887622 2445677899999999999999999887542 11 12344667777666655
Q ss_pred CCcchHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----C-------cchHHHHH
Q 036577 156 GRVSPGFVVLGRILRSC-FTPD----AVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEP----N-------VITYSTLI 219 (470)
Q Consensus 156 g~~~~a~~~~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~----~-------~~~~~~l~ 219 (470)
.+.+--.++++.-+..- -..+ -.+-.-|...|...|++....++++++...-... | ...|..-+
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 56555555554433210 0001 1123457778888888888888888886431111 1 23466667
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHH-----HHHhCCCHHHHHHHH
Q 036577 220 NGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIID-----GLCKEGFVDKAKELF 276 (470)
Q Consensus 220 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~g~~~~a~~~~ 276 (470)
..|....+-.+...+|++....... -|.+.... .|+ ...+.|++++|..-|
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSA-----IPHPlImG-vIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSA-----IPHPLIMG-VIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhcc-----CCchHHHh-HHHHcCCccccccchHHHHHhHH
Confidence 7777777777788888887765532 34433332 233 334567888775444
No 347
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=82.71 E-value=4.9 Score=27.32 Aligned_cols=47 Identities=15% Similarity=0.154 Sum_probs=31.0
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCH--hHHHHHHHHHHhcCCHHHHHHHH
Q 036577 405 KNKEIEGALSLYSEMLSKGIKPDV--VIYNTLFIGLFEIHQVERAFKLF 451 (470)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~ 451 (470)
...+.++|+..|+..+++-..+.. .++..|+.+++..|++.+++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677788888777765333221 25566777788888887776654
No 348
>PRK09687 putative lyase; Provisional
Probab=82.45 E-value=35 Score=30.33 Aligned_cols=136 Identities=18% Similarity=0.138 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 036577 287 NVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNG-KMDEASRLLDLMIQIGVRPNAFVYNTLM 365 (470)
Q Consensus 287 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 365 (470)
+..+-...+.++.+.++ +++...+..+.+. ++...-...+.++.+.+ +...+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 55555566666666665 3455555555542 33334444444444432 23355555555553 33556666667
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 036577 366 DGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGL 438 (470)
Q Consensus 366 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 438 (470)
.++.+.|+ ..|...+-...+.+ + .....+.++...|.. +|+..+..+.+. .||..+-...+.+|
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 77777776 34555554444432 2 233566777777774 577777777653 34555554444444
No 349
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.25 E-value=3.7 Score=24.39 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=11.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH
Q 036577 399 LINGYCKNKEIEGALSLYSEMLS 421 (470)
Q Consensus 399 l~~~~~~~g~~~~A~~~~~~~~~ 421 (470)
+..+|...|+.+.|.+++++.+.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34444445555555555544443
No 350
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.98 E-value=3.1 Score=24.70 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=23.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 036577 433 TLFIGLFEIHQVERAFKLFDEMRRDG 458 (470)
Q Consensus 433 ~l~~~~~~~g~~~~A~~~~~~m~~~g 458 (470)
.|..+|...|+.+.|.++++++...|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 47789999999999999999999654
No 351
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=81.53 E-value=1.1e+02 Score=35.53 Aligned_cols=314 Identities=11% Similarity=0.021 Sum_probs=161.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036577 112 ILFGCLAKNKHYDTVLSLFKRL----NSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGL 187 (470)
Q Consensus 112 ~l~~~~~~~~~~~~A~~~~~~m----~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 187 (470)
.+..+-.+.+.+.+|+..++.- .+. .-....+..+...|...+++|...-+...-.. .|+ .+ .-|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~-~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LY-QQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HH-HHHHHH
Confidence 4455556778888888888873 221 11223444455588888888887776664211 222 22 234455
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHH-HHHHHhC
Q 036577 188 CAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTI-IDGLCKE 266 (470)
Q Consensus 188 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~ 266 (470)
...|++..|...|+++...+ ++....++.++......|.+...+-..+-..... .+....++.+ +.+--+.
T Consensus 1460 e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-------se~~~~~~s~~~eaaW~l 1531 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-------SEEVDELNSLGVEAAWRL 1531 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-------CHHHHHHHHHHHHHHhhh
Confidence 66889999999999988764 2336677777777777788877777665554433 2333333332 3444677
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHH--HHHHHcc--CCHHHHHHHHHHHHHCCCCC---------CHhHHHHHHHHH
Q 036577 267 GFVDKAKELFLKMKDENINPNVVTYNSL--IHGFCYA--NDWNEAKCLLIEMMDQGVQP---------NVVTFNVIMDEL 333 (470)
Q Consensus 267 g~~~~a~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~--~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~ 333 (470)
++++....... .. +..+|... .....+. .|.-.-.+..+.+.+.-+.| =...|..++...
T Consensus 1532 ~qwD~~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH 1604 (2382)
T KOG0890|consen 1532 SQWDLLESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLH 1604 (2382)
T ss_pred cchhhhhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHH
Confidence 77777666654 11 22233322 2222221 22111112222222211110 012233333322
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCC------HhHHHHHHHHHHcCCCHHHHHHHHHH-HHHC----CC-CCCHHHHHHHHH
Q 036577 334 CKNGKMDEASRLLDLMIQIGVRPN------AFVYNTLMDGFCLTGRVNRAKELFVS-MESN----RC-MHDVFSYSILIN 401 (470)
Q Consensus 334 ~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~----~~-~~~~~~~~~l~~ 401 (470)
.-.. -....+... +..++ ..-|-.-+..-....+..+-+--+++ +... +. ..-..+|-...+
T Consensus 1605 ~l~e----l~~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAr 1678 (2382)
T KOG0890|consen 1605 LLLE----LENSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSAR 1678 (2382)
T ss_pred HHHH----HHHHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHH
Confidence 2111 001111111 11111 11121111111111111111111111 1111 11 224667888888
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036577 402 GYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRD 457 (470)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (470)
..-.+|+++.|...+-...+.+ . +..+.....-+...|+...|+.++++..+.
T Consensus 1679 iaR~aG~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1679 IARLAGHLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHhcccHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 8888999999998877766654 2 334556667788999999999999998854
No 352
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.71 E-value=2.8 Score=21.38 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=8.8
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 036577 434 LFIGLFEIHQVERAFKLF 451 (470)
Q Consensus 434 l~~~~~~~g~~~~A~~~~ 451 (470)
+..++...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 444444555555555444
No 353
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=79.82 E-value=30 Score=30.30 Aligned_cols=88 Identities=14% Similarity=0.059 Sum_probs=42.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHH----
Q 036577 113 LFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLC---- 188 (470)
Q Consensus 113 l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 188 (470)
=|.+++..+++.+++...-.--+.--+--......-|-.|.+.+.+..+.++-...++..-.-+..-|..++..|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 3556666666666655544333221111223344444456666666666666555554322223333555444443
Q ss_pred -hcCCHHHHHHHH
Q 036577 189 -AESRIMEAAALF 200 (470)
Q Consensus 189 -~~g~~~~a~~~~ 200 (470)
-.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 345566665554
No 354
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=79.76 E-value=20 Score=25.85 Aligned_cols=43 Identities=12% Similarity=0.122 Sum_probs=18.8
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036577 309 CLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQ 351 (470)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 351 (470)
+-++.+....+.|++....+.+.+|.+.+++..|.++++-+..
T Consensus 31 rglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 31 RGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3333444444445555555555555555555555555554443
No 355
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=79.34 E-value=61 Score=31.15 Aligned_cols=62 Identities=13% Similarity=0.193 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036577 176 DAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240 (470)
Q Consensus 176 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 240 (470)
|.....+++..+..+....-++.+..+|...| -+...|..++.+|... .-+.-..+++++.+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve 126 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVE 126 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHH
Confidence 33344444444544444455555555555443 3444444555555444 33444444444444
No 356
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=79.29 E-value=44 Score=29.49 Aligned_cols=134 Identities=10% Similarity=0.124 Sum_probs=80.7
Q ss_pred CChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHh-CC-CHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHccC
Q 036577 226 GHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCK-EG-FVDKAKELFLKMKDE-NINPNVVTYNSLIHGFCYAN 302 (470)
Q Consensus 226 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g-~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~ 302 (470)
..+.+|+++|+.....+. +-.|..+...+++.... .+ ....-.++.+.+... +-.++..+...++..++..+
T Consensus 142 ~~Vv~aL~L~~~~~~~~~-----Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~ 216 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDES-----IIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESR 216 (292)
T ss_pred HHHHHHHHHhhccCcccc-----eeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcc
Confidence 344566666664322111 34566666666666655 22 222333344444332 34567777788888888888
Q ss_pred CHHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHH-----HHHcCCCCCHhHHHHH
Q 036577 303 DWNEAKCLLIEMMDQ-GVQPNVVTFNVIMDELCKNGKMDEASRLLDL-----MIQIGVRPNAFVYNTL 364 (470)
Q Consensus 303 ~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-----~~~~~~~~~~~~~~~l 364 (470)
+|..-.+.++..... +...|...|..++......|+..-...+.++ +.+.++..+...-..+
T Consensus 217 dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L 284 (292)
T PF13929_consen 217 DWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQL 284 (292)
T ss_pred cHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHH
Confidence 888888888877655 4456777888888888888887765555544 2333444444443333
No 357
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.09 E-value=87 Score=32.76 Aligned_cols=116 Identities=11% Similarity=0.040 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCc--chHHHHHHHHHhCCCCCCHHHHH--
Q 036577 109 SFNILFGCLAKNKHYDTVLSLFKRLNSTG---LFPDLYTYNILINCFCKMGRV--SPGFVVLGRILRSCFTPDAVTFN-- 181 (470)
Q Consensus 109 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~-- 181 (470)
-|..|+..|...|..++|++++.+..... -.--...+..++.-+.+.+.. +-..+.-+..++........++.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 37889999999999999999999987632 011122334455555555554 44444444444332111111111
Q ss_pred ----------HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 036577 182 ----------SLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCR 224 (470)
Q Consensus 182 ----------~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 224 (470)
.-+-.|......+-+..+++.+....-..+....+.++..|+.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1233456677788888999988876555566677777777764
No 358
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=78.89 E-value=45 Score=29.31 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=16.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 036577 433 TLFIGLFEIHQVERAFKLFDEMR 455 (470)
Q Consensus 433 ~l~~~~~~~g~~~~A~~~~~~m~ 455 (470)
.++..+.+.|++.+|+.+.+.+.
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHH
Confidence 46677788888888877765554
No 359
>PRK11619 lytic murein transglycosylase; Provisional
Probab=78.05 E-value=83 Score=31.95 Aligned_cols=226 Identities=8% Similarity=-0.020 Sum_probs=112.9
Q ss_pred cCChHHHHHHHHHHHhcCCCCCcccCC--CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 036577 225 TGHTIVALNLFEEMANGNGEIGVVCEP--NTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYAN 302 (470)
Q Consensus 225 ~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 302 (470)
..+.+.|..++........ ..+ ....+..+.......+..+++...++...... .+......-+......+
T Consensus 254 r~d~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~ 326 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQK-----LNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTG 326 (644)
T ss_pred HhCHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHcc
Confidence 4456778888877644432 111 11223333333333332556666666544332 23333444455555778
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHc------------CCCCC------HhH----
Q 036577 303 DWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQI------------GVRPN------AFV---- 360 (470)
Q Consensus 303 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------------~~~~~------~~~---- 360 (470)
+++.+...+..|.... .-...-..-+..++...|+.++|...|+.+... |..+. ...
T Consensus 327 dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~ 405 (644)
T PRK11619 327 DRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSAL 405 (644)
T ss_pred CHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhh
Confidence 8888777777764432 223333445566666678888888887776432 11100 000
Q ss_pred ----HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-----CCCCCHhHH
Q 036577 361 ----YNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK-----GIKPDVVIY 431 (470)
Q Consensus 361 ----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~ 431 (470)
-..-+..+...|....|...|..+... .+......+.....+.|..+.++......... .+ | ..|
T Consensus 406 ~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rf-p--~~~ 479 (644)
T PRK11619 406 TQGPEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERF-P--LAW 479 (644)
T ss_pred ccChHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhC-C--cch
Confidence 011233345567777777777666653 24444555555555667777666655432210 11 1 124
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 036577 432 NTLFIGLFEIHQVERAFKLFDEMRRDGVAADTW 464 (470)
Q Consensus 432 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 464 (470)
...+..+.+.-..+.++-+---..+.++.|+..
T Consensus 480 ~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a~ 512 (644)
T PRK11619 480 NDEFRRYTSGKGIPQSYAMAIARQESAWNPKAR 512 (644)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCc
Confidence 444444444444444433222233555666544
No 360
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=77.53 E-value=35 Score=29.92 Aligned_cols=87 Identities=13% Similarity=0.028 Sum_probs=52.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036577 219 INGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGF 298 (470)
Q Consensus 219 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 298 (470)
|.+++..+++.+++...-+.-+... +-.+.....-|-.|.+.+++..+.++-..-....-.-+...|..++..|
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pE------klPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELy 163 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPE------KLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELY 163 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcc------cCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHH
Confidence 5667777777777666555444331 2334455666667778888877777776665542222333466666555
Q ss_pred Hc-----cCCHHHHHHHH
Q 036577 299 CY-----ANDWNEAKCLL 311 (470)
Q Consensus 299 ~~-----~~~~~~a~~~~ 311 (470)
.. .|.+++|+++.
T Consensus 164 Ll~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 164 LLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHhccccHHHHHHHH
Confidence 43 47788887766
No 361
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=77.03 E-value=5.3 Score=20.52 Aligned_cols=25 Identities=8% Similarity=0.199 Sum_probs=12.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 036577 431 YNTLFIGLFEIHQVERAFKLFDEMR 455 (470)
Q Consensus 431 ~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (470)
|..+...+...|++++|...+++..
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344444444555555555554444
No 362
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=76.79 E-value=6.7 Score=24.43 Aligned_cols=33 Identities=27% Similarity=0.215 Sum_probs=19.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHH
Q 036577 399 LINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNT 433 (470)
Q Consensus 399 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 433 (470)
+.-++.+.|++++|.+..+.+++. .|+..-...
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~ 39 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQS 39 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHH
Confidence 445667777777777777777754 555443333
No 363
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=76.57 E-value=61 Score=29.57 Aligned_cols=99 Identities=7% Similarity=-0.024 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHHHccCC------------HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036577 285 NPNVVTYNSLIHGFCYAND------------WNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQI 352 (470)
Q Consensus 285 ~~~~~~~~~li~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 352 (470)
+-|+.+|-.++..--..-. .+.-+.+++++++.+ +.+...+..++..+.+..+.++..+.++++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4467777777754322211 234455666666653 445555666666666666666667777777665
Q ss_pred CCCCCHhHHHHHHHHHHc---CCCHHHHHHHHHHHH
Q 036577 353 GVRPNAFVYNTLMDGFCL---TGRVNRAKELFVSME 385 (470)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~ 385 (470)
... +...|...++.... .-.++....+|.+.+
T Consensus 95 ~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 95 NPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred CCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 433 55666666655433 234566666665543
No 364
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.82 E-value=1.8 Score=38.48 Aligned_cols=86 Identities=9% Similarity=-0.027 Sum_probs=37.1
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHH
Q 036577 85 ITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVV 164 (470)
Q Consensus 85 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 164 (470)
|.++.|++.|...+...|. ....|..-..++.+.+++..|++=+......+ +....-|..--.+..-.|++++|...
T Consensus 128 G~~~~ai~~~t~ai~lnp~--~a~l~~kr~sv~lkl~kp~~airD~d~A~ein-~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPP--LAILYAKRASVFLKLKKPNAAIRDCDFAIEIN-PDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cchhhhhcccccccccCCc--hhhhcccccceeeeccCCchhhhhhhhhhccC-cccccccchhhHHHHHhhchHHHHHH
Confidence 3445555555554444432 44444444444445555555544444444332 11112233333333334445555444
Q ss_pred HHHHHhCCC
Q 036577 165 LGRILRSCF 173 (470)
Q Consensus 165 ~~~~~~~~~ 173 (470)
+....+.++
T Consensus 205 l~~a~kld~ 213 (377)
T KOG1308|consen 205 LALACKLDY 213 (377)
T ss_pred HHHHHhccc
Confidence 444444433
No 365
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=75.81 E-value=8.5 Score=20.29 Aligned_cols=30 Identities=17% Similarity=0.051 Sum_probs=20.7
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 036577 85 ITPNEAFCIFDYMLNMRPSPPPVSSFNILFGC 116 (470)
Q Consensus 85 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~ 116 (470)
|+.+.|..+|+.++...|. +...|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~--~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPK--SVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCC--ChHHHHHHHHH
Confidence 3567788888888776664 67777666543
No 366
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=75.80 E-value=50 Score=28.21 Aligned_cols=104 Identities=18% Similarity=0.205 Sum_probs=65.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHC-C-----------CCCCHHHHHHH
Q 036577 332 ELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESN-R-----------CMHDVFSYSIL 399 (470)
Q Consensus 332 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-----------~~~~~~~~~~l 399 (470)
-|.+..+..--.++.+-....+++-+..-+.+++ +...|+..+|..-++.-... | -.|.+.....+
T Consensus 168 Rysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~m 245 (333)
T KOG0991|consen 168 RYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKM 245 (333)
T ss_pred hhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHH
Confidence 3444444444445555555556655555555554 44689999999888776542 1 14566666666
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 036577 400 INGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLF 439 (470)
Q Consensus 400 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 439 (470)
+..|. .+++++|.+++.++-+.|+.|.. ..+.+.+++-
T Consensus 246 l~~~~-~~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~K 283 (333)
T KOG0991|consen 246 LQACL-KRNIDEALKILAELWKLGYSPED-IITTLFRVVK 283 (333)
T ss_pred HHHHH-hccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHH
Confidence 66554 56789999999999888888654 3345555543
No 367
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=74.96 E-value=62 Score=28.88 Aligned_cols=186 Identities=12% Similarity=0.025 Sum_probs=104.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----ccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH----cC
Q 036577 266 EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFC----YANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCK----NG 337 (470)
Q Consensus 266 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 337 (470)
.+++..+.+.+......+ +......+...|. ...+..+|...+..+.+.|.. .....+...|.. ..
T Consensus 54 ~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 54 PPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCccc
Confidence 445566666666665533 2233333333333 234567777877766666532 233334444443 33
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----c
Q 036577 338 KMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTG-------RVNRAKELFVSMESNRCMHDVFSYSILINGYCK----N 406 (470)
Q Consensus 338 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 406 (470)
+..+|...++.+.+.|..+-......+...|..-. +...|...+.++-..+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 77788888888887775532233444444444321 2336777777777665 45555555555543 3
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHcCCCCChh
Q 036577 407 KEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIH---------------QVERAFKLFDEMRRDGVAADTW 464 (470)
Q Consensus 407 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~m~~~g~~p~~~ 464 (470)
.+.++|..+|+...+.|. ......+. .+...| +...|...+......|......
T Consensus 205 ~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 273 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACE 273 (292)
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHH
Confidence 467788888888887764 22222222 444444 7777888888777766554443
No 368
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=73.87 E-value=17 Score=35.22 Aligned_cols=86 Identities=19% Similarity=0.169 Sum_probs=37.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 036577 336 NGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSL 415 (470)
Q Consensus 336 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 415 (470)
.|+...|...+.......+.-..+....|.+...+.|....|-.++.+..... ...+.++-.+..++....+++.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 44455555544444333222122223334444444444445555444443332 12233444455555555555555555
Q ss_pred HHHHHHC
Q 036577 416 YSEMLSK 422 (470)
Q Consensus 416 ~~~~~~~ 422 (470)
|++..+.
T Consensus 699 ~~~a~~~ 705 (886)
T KOG4507|consen 699 FRQALKL 705 (886)
T ss_pred HHHHHhc
Confidence 5555543
No 369
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=71.72 E-value=6.8 Score=36.79 Aligned_cols=104 Identities=10% Similarity=0.058 Sum_probs=75.6
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc
Q 036577 79 EGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158 (470)
Q Consensus 79 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 158 (470)
...+..+.++.|..++.++++.+|. .+..|..-..++.+.+++..|+.=+.+..+.. +-....|..-..++.+.+++
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpn--ca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPN--CAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCc--ceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHH
Confidence 3445677899999999999998876 66666666678889999999998888888764 33344555555667777788
Q ss_pred chHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036577 159 SPGFVVLGRILRSCFTPDAVTFNSLIKGL 187 (470)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 187 (470)
.+|+..|+..... .|+..-....+.-|
T Consensus 89 ~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 89 KKALLDLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHhhhc--CcCcHHHHHHHHHH
Confidence 8888888877664 56666555555544
No 370
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.53 E-value=69 Score=27.94 Aligned_cols=199 Identities=15% Similarity=0.140 Sum_probs=121.9
Q ss_pred CCCHhhHHHHHHHH-HhCCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHC---CC--C
Q 036577 250 EPNTVTYTTIIDGL-CKEGFVDKAKELFLKMKDENINPNV---VTYNSLIHGFCYANDWNEAKCLLIEMMDQ---GV--Q 320 (470)
Q Consensus 250 ~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~--~ 320 (470)
.||+..-+..-..- .+..+.++|+.-|++..+..-.... .....++..+.+.+++++....+.++... .+ .
T Consensus 23 EpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrN 102 (440)
T KOG1464|consen 23 EPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRN 102 (440)
T ss_pred CCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 55554433322211 2345788999999998875222222 34456788899999999999888887531 11 2
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC------
Q 036577 321 PNVVTFNVIMDELCKNGKMDEASRLLDLMIQI-----GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRC------ 389 (470)
Q Consensus 321 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------ 389 (470)
-+..+.|+++.......+.+.-..+++.-.+. +-+.--.|-+.|...|...|.+.+..++++++....-
T Consensus 103 ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGed 182 (440)
T KOG1464|consen 103 YSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGED 182 (440)
T ss_pred ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCch
Confidence 24556778877766666666655555543321 1112223445677888888888888888888765311
Q ss_pred -----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCHhHHHHHHHHH-----HhcCCHHHHHH
Q 036577 390 -----MHDVFSYSILINGYCKNKEIEGALSLYSEMLSK-GIKPDVVIYNTLFIGL-----FEIHQVERAFK 449 (470)
Q Consensus 390 -----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~-----~~~g~~~~A~~ 449 (470)
..-...|..-|..|....+-.+-..++++.+.- .--|.+.+. .+|+-| .+.|++++|..
T Consensus 183 D~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 183 DQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHh
Confidence 112456777788888888888888888876642 223444333 334433 35677877753
No 371
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=71.52 E-value=98 Score=29.68 Aligned_cols=38 Identities=8% Similarity=-0.006 Sum_probs=22.7
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 036577 402 GYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFE 440 (470)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 440 (470)
.|...|++-.|.+.|.+.... +.-++..|-.|..+|..
T Consensus 344 ~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 344 LYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 455666666666666666542 34466666666666653
No 372
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=71.23 E-value=16 Score=24.92 Aligned_cols=46 Identities=9% Similarity=-0.003 Sum_probs=29.8
Q ss_pred cCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCChhHHHHH
Q 036577 370 LTGRVNRAKELFVSMESNRCMH--DVFSYSILINGYCKNKEIEGALSL 415 (470)
Q Consensus 370 ~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~ 415 (470)
...+-++|+..|....+.-..+ --.++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777776653332 233456667777777777777665
No 373
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.08 E-value=90 Score=29.09 Aligned_cols=165 Identities=13% Similarity=0.040 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---------CCCCCc
Q 036577 144 TYNILINCFCKMGRVSPGFVVLGRILRSC--FTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAF---------GCEPNV 212 (470)
Q Consensus 144 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------g~~~~~ 212 (470)
.+.-+...|..+|+++.|++.+.+..... .+..+..|-.+|..-.-.|++.....+..+.... .+++-.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 56667778888888888888888855422 1223344555666666677777777766666543 122222
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHH-----HHHHHhCCCCCC
Q 036577 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKEL-----FLKMKDENINPN 287 (470)
Q Consensus 213 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-----~~~~~~~~~~~~ 287 (470)
..+..+.... .+++..|.+.|-.......+....+.|...+....+.+.+--++-+--+.+ |+...+. .
T Consensus 232 ~C~agLa~L~--lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel----~ 305 (466)
T KOG0686|consen 232 KCAAGLANLL--LKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLEL----E 305 (466)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhc----C
Confidence 3333333332 336666666554443322221112334333333334444433333222222 2222221 3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 036577 288 VVTYNSLIHGFCYANDWNEAKCLLIEMMD 316 (470)
Q Consensus 288 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (470)
+..+..+..-| .+++..++++++++..
T Consensus 306 Pqlr~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 306 PQLREILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred hHHHHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 33444444433 4567777777777654
No 374
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=70.96 E-value=34 Score=24.17 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=42.3
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCc
Q 036577 92 CIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLF-PDLYTYNILINCFCKMGRV 158 (470)
Q Consensus 92 ~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~ 158 (470)
.-++..+..+|. +...--.+...+...|++++|++.+-++.+..-. .+...-..++..+.-.|.-
T Consensus 9 ~al~~~~a~~P~--D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 9 AALEAALAANPD--DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHSTT---HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHcCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 344555666665 7788888889999999999999999888877422 2344555666665555543
No 375
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=70.58 E-value=1.1e+02 Score=31.00 Aligned_cols=117 Identities=11% Similarity=0.135 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHH----------HHHHHHHHHH
Q 036577 230 VALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVV----------TYNSLIHGFC 299 (470)
Q Consensus 230 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----------~~~~li~~~~ 299 (470)
+-..++.+|...-... ......+...++-.|....+++...++.+.+... ||.. .|...++---
T Consensus 181 ~l~~~L~~mR~RlDnp---~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRN 254 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNP---DVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRN 254 (1226)
T ss_pred HHHHHHHHHHhhcCCc---cccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccC
Confidence 4445666776554211 1223455667777788888999999999988874 3321 1222222223
Q ss_pred ccCCHHHHHHHHHHHHHCC--CCCCHhH-----HHH--HHHHHHHcCCHHHHHHHHHHHHHc
Q 036577 300 YANDWNEAKCLLIEMMDQG--VQPNVVT-----FNV--IMDELCKNGKMDEASRLLDLMIQI 352 (470)
Q Consensus 300 ~~~~~~~a~~~~~~~~~~~--~~~~~~~-----~~~--l~~~~~~~g~~~~a~~~~~~~~~~ 352 (470)
+-||-++|+.+.-.+.+.. +.||... |-- +-+.|...+..+.|...|++.-+.
T Consensus 255 r~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev 316 (1226)
T KOG4279|consen 255 RPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV 316 (1226)
T ss_pred CCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc
Confidence 4578888888887776643 4455432 221 112344556677788888887764
No 376
>PHA02875 ankyrin repeat protein; Provisional
Probab=70.57 E-value=50 Score=31.30 Aligned_cols=211 Identities=15% Similarity=0.100 Sum_probs=101.4
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcC
Q 036577 116 CLAKNKHYDTVLSLFKRLNSTGLFPDLYT--YNILINCFCKMGRVSPGFVVLGRILRSCFTPDAV--TFNSLIKGLCAES 191 (470)
Q Consensus 116 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g 191 (470)
..++.|+.+-+..+ .+.|..++... ..+.+...+..|+.+ +.+.+++.|..|+.. ....-+...+..|
T Consensus 8 ~A~~~g~~~iv~~L----l~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 8 DAILFGELDIARRL----LDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHHhCCHHHHHHH----HHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCC
Confidence 34456776554444 45676665432 234455556666654 555566666555432 1223455666778
Q ss_pred CHHHHHHHHHHHHhcCCCCCcc---hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCC
Q 036577 192 RIMEAAALFTKLKAFGCEPNVI---TYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGF 268 (470)
Q Consensus 192 ~~~~a~~~~~~~~~~g~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 268 (470)
+.+.+..+++ .|...+.. .-.+.+...+..|+.+-+..+ .+.+... ..++..- .+.+...+..|+
T Consensus 80 ~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~L----l~~gad~---~~~~~~g-~tpLh~A~~~~~ 147 (413)
T PHA02875 80 DVKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLDIMKLL----IARGADP---DIPNTDK-FSPLHLAVMMGD 147 (413)
T ss_pred CHHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHHHHHHH----HhCCCCC---CCCCCCC-CCHHHHHHHcCC
Confidence 8776655554 33222111 112344445566776544433 3333211 0112211 234455566777
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhH---HHHHHHHHHHcCCHHHH
Q 036577 269 VDKAKELFLKMKDENINPN---VVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVT---FNVIMDELCKNGKMDEA 342 (470)
Q Consensus 269 ~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a 342 (470)
.+.+..++ +.|..++ ..-.+.+. ..+..|+.+ +.+.+.+.|..++... ..+.+...+..|+.+
T Consensus 148 ~~~v~~Ll----~~g~~~~~~d~~g~TpL~-~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~-- 216 (413)
T PHA02875 148 IKGIELLI----DHKACLDIEDCCGCTPLI-IAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID-- 216 (413)
T ss_pred HHHHHHHH----hcCCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH--
Confidence 66554444 3333322 22223333 334456654 3444556665555322 123444344556654
Q ss_pred HHHHHHHHHcCCCCCHh
Q 036577 343 SRLLDLMIQIGVRPNAF 359 (470)
Q Consensus 343 ~~~~~~~~~~~~~~~~~ 359 (470)
+.+.+.+.|..++..
T Consensus 217 --iv~~Ll~~gad~n~~ 231 (413)
T PHA02875 217 --IVRLFIKRGADCNIM 231 (413)
T ss_pred --HHHHHHHCCcCcchH
Confidence 555666777776643
No 377
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=70.52 E-value=32 Score=33.49 Aligned_cols=104 Identities=15% Similarity=0.043 Sum_probs=69.6
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 036577 118 AKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAA 197 (470)
Q Consensus 118 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 197 (470)
...|+...|...+.......-.........|.+...+.|-...|..++.+.+... ....-++..+.++|....+++.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 4568888888887776544211222345566677777788888888887777654 334566777888888889999999
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHH
Q 036577 198 ALFTKLKAFGCEPNVITYSTLINGLC 223 (470)
Q Consensus 198 ~~~~~~~~~g~~~~~~~~~~l~~~~~ 223 (470)
+.|++..+.. +.+.+.-+.+...-|
T Consensus 697 ~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 9998887653 234455555554444
No 378
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=70.06 E-value=67 Score=27.21 Aligned_cols=24 Identities=8% Similarity=-0.046 Sum_probs=14.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 036577 434 LFIGLFEIHQVERAFKLFDEMRRD 457 (470)
Q Consensus 434 l~~~~~~~g~~~~A~~~~~~m~~~ 457 (470)
+.....+.|+.++|.++|.++...
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcC
Confidence 344555666666666666666643
No 379
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=69.96 E-value=13 Score=24.00 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=12.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 036577 433 TLFIGLFEIHQVERAFKLFDEMR 455 (470)
Q Consensus 433 ~l~~~~~~~g~~~~A~~~~~~m~ 455 (470)
.++.++...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34555555555555555555554
No 380
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=69.45 E-value=1.1e+02 Score=29.44 Aligned_cols=247 Identities=11% Similarity=0.143 Sum_probs=139.1
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc------CChHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCC
Q 036577 86 TPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKN------KHYDTVLSLFKRLNSTG-LFP-DLYTYNILINCFCKMGR 157 (470)
Q Consensus 86 ~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~m~~~~-~~~-~~~~~~~li~~~~~~g~ 157 (470)
+-+.-..+|+..++.-+ +...|+..|..|... .....-+.+++.....+ ..+ ....|..+.-.++..+
T Consensus 297 k~s~~~~v~ee~v~~l~---t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~- 372 (568)
T KOG2396|consen 297 KESRCCAVYEEAVKTLP---TESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLN- 372 (568)
T ss_pred hHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccc-
Confidence 34445577777776655 356677666666543 24556677777665543 222 3345555555555544
Q ss_pred cchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHH-HHHHHHHHhcCCCCCcchHHHHHHHHHhcCC-hHH--HH
Q 036577 158 VSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAE-SRIMEA-AALFTKLKAFGCEPNVITYSTLINGLCRTGH-TIV--AL 232 (470)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a-~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~-~~~--a~ 232 (470)
++...-..+...++..+...|..-+....+. .+++-. ..++..+...-..+-...|+... .|+ ... -.
T Consensus 373 --~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~ 445 (568)
T KOG2396|consen 373 --EAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLD 445 (568)
T ss_pred --hHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHH
Confidence 3334444444344456777777666666533 232222 22333333321122233333333 222 111 11
Q ss_pred HHHHHHHhcCCCCCcccCCCHhh-HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--cCCHHHHHH
Q 036577 233 NLFEEMANGNGEIGVVCEPNTVT-YTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCY--ANDWNEAKC 309 (470)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~ 309 (470)
.++....... .++..+ -+.++..+.+.|-..+|..++..+... .+|+...|..+++.=.. .-+..-+..
T Consensus 446 ~Ii~a~~s~~-------~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~ 517 (568)
T KOG2396|consen 446 LIISALLSVI-------GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIRE 517 (568)
T ss_pred HHHHHHHHhc-------CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHH
Confidence 1222222222 344444 356778888889999999999888876 45677888877764221 123677778
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036577 310 LLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQI 352 (470)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 352 (470)
+++.|...-. .|+..|...+.--...|..+.+-.++.++.+.
T Consensus 518 ~yd~a~~~fg-~d~~lw~~y~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 518 YYDRALREFG-ADSDLWMDYMKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred HHHHHHHHhC-CChHHHHHHHHhhccCCCcccccHHHHHHHHh
Confidence 8888776422 57777777777767888888888888776653
No 381
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=69.30 E-value=37 Score=24.47 Aligned_cols=51 Identities=20% Similarity=0.163 Sum_probs=25.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 036577 186 GLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242 (470)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 242 (470)
.+...|++++|..+.+.+. .||...|..+... +.|-.+++..-+.++...+
T Consensus 48 SLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLC----YPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCCC----CchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 3445566666665555442 3555555544332 4455555555555554444
No 382
>PRK10941 hypothetical protein; Provisional
Probab=69.07 E-value=36 Score=29.99 Aligned_cols=61 Identities=13% Similarity=0.085 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036577 110 FNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS 171 (470)
Q Consensus 110 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 171 (470)
.+.+-.+|.+.++++.|+...+.+.... +.+..-+.--.-.|.+.|.+..|..=++..++.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 3445556666777777777777766654 445555555666667777777776666666554
No 383
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=68.45 E-value=42 Score=24.22 Aligned_cols=87 Identities=26% Similarity=0.272 Sum_probs=52.7
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHH
Q 036577 86 TPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVL 165 (470)
Q Consensus 86 ~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 165 (470)
.-++|-.+-+++...+.. ...+--.-+..+...|+|++|..+.+.+ ..||...|..|.. .+.|..+++..-+
T Consensus 20 cHqEA~tIAdwL~~~~~~--~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl 91 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES--EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRL 91 (115)
T ss_pred HHHHHHHHHHHHhcCCch--HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHH
Confidence 357787777777554321 1112222344566788888888887665 3678777766654 4566666666667
Q ss_pred HHHHhCCCCCCHHHHH
Q 036577 166 GRILRSCFTPDAVTFN 181 (470)
Q Consensus 166 ~~~~~~~~~~~~~~~~ 181 (470)
.++...| .|....|.
T Consensus 92 ~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 92 NRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHhCC-CHHHHHHH
Confidence 7776666 44444443
No 384
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.50 E-value=1.5e+02 Score=30.28 Aligned_cols=102 Identities=12% Similarity=0.108 Sum_probs=64.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 036577 114 FGCLAKNKHYDTVLSLFKRLNSTGLFP---DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAE 190 (470)
Q Consensus 114 ~~~~~~~~~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (470)
++-+.+.+.+++|+++-+..... .| -.......|..+...|++++|-...-.|... +..-|..-+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 45567788899998887665433 33 3446777888888888888888887777643 556666666666666
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 036577 191 SRIMEAAALFTKLKAFGCEPNVITYSTLINGLCR 224 (470)
Q Consensus 191 g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 224 (470)
++......+ +.......+...|..++..+..
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 554443322 2222112345567777766665
No 385
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=67.15 E-value=31 Score=28.58 Aligned_cols=31 Identities=13% Similarity=-0.064 Sum_probs=15.5
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 036577 390 MHDVFSYSILINGYCKNKEIEGALSLYSEML 420 (470)
Q Consensus 390 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 420 (470)
.|+...|..++.++...|+.++|..+.+++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555555555555555555555544444
No 386
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=65.52 E-value=44 Score=23.38 Aligned_cols=65 Identities=9% Similarity=0.030 Sum_probs=37.6
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchH
Q 036577 90 AFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPG 161 (470)
Q Consensus 90 A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 161 (470)
+.++++.+++.+.. +......+-.+-...|+.+.|.+++..+. +| |+ .|...+.++.+.|.-.-|
T Consensus 21 ~~~v~d~ll~~~il--T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~~--aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL--TEEDRNRIEAATENHGNESGARELLKRIV-QK--EG--WFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC--CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--Cc--HHHHHHHHHHHcCchhhh
Confidence 45566666666544 44444444433335677777777777777 43 33 466666666666654433
No 387
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=65.46 E-value=1e+02 Score=27.51 Aligned_cols=183 Identities=11% Similarity=-0.018 Sum_probs=110.7
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036577 224 RTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCK----EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFC 299 (470)
Q Consensus 224 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 299 (470)
..+++..+...+......+ +......+...|.. ..+..+|.++|....+.|. ......|...|.
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---------~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~ 120 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---------DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYA 120 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---------ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHh
Confidence 4556677777777766533 12333344444443 3457889999987777653 333444555555
Q ss_pred c----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc-----C--CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 036577 300 Y----ANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKN-----G--KMDEASRLLDLMIQIGVRPNAFVYNTLMDGF 368 (470)
Q Consensus 300 ~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 368 (470)
. ..|..+|...+.+..+.|..+.......+...|..- - +...|...+.++-..+ +......+...|
T Consensus 121 ~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y 197 (292)
T COG0790 121 NGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMY 197 (292)
T ss_pred cCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHH
Confidence 4 348899999999999988554323344444444432 1 2347888888888876 444555555555
Q ss_pred Hc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---------------ChhHHHHHHHHHHHCCCC
Q 036577 369 CL----TGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNK---------------EIEGALSLYSEMLSKGIK 425 (470)
Q Consensus 369 ~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~~~ 425 (470)
.. ..+..+|...|....+.|. ......+. .+...| +...|...+......+..
T Consensus 198 ~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 198 EKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred HcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 43 3478999999999988873 33333333 455555 555555555555555444
No 388
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=64.19 E-value=13 Score=22.54 Aligned_cols=32 Identities=9% Similarity=0.173 Sum_probs=20.0
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 036577 404 CKNKEIEGALSLYSEMLSKGIKPDVVIYNTLF 435 (470)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 435 (470)
.+.|-.+++..++++|.+.|+..+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 45566666666666666666666666655544
No 389
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=64.16 E-value=1.4e+02 Score=28.62 Aligned_cols=121 Identities=7% Similarity=-0.023 Sum_probs=77.3
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHH
Q 036577 83 TTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGF 162 (470)
Q Consensus 83 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 162 (470)
..|++-.|-+-...+++..|.-|+ ............|+++.+.+.+....+. +.....+...++....+.|++++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~--~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPV--LIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCch--hhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 345666565444445555554233 3333344566789999999988776543 2344567888888899999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036577 163 VVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFG 207 (470)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 207 (470)
.+-+-|+...+. +..+...-....-..|-++++.-.|+++...+
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 998888876544 22332222222334567888888888876543
No 390
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=63.39 E-value=61 Score=26.46 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=34.2
Q ss_pred ChhHHHHHHHHHHhcCCCCCC--HHH-----HHHHHHHHHhcCChHHHHHHHHHHHh
Q 036577 86 TPNEAFCIFDYMLNMRPSPPP--VSS-----FNILFGCLAKNKHYDTVLSLFKRLNS 135 (470)
Q Consensus 86 ~~~~A~~~f~~~~~~~~~~~~--~~~-----~~~l~~~~~~~~~~~~A~~~~~~m~~ 135 (470)
-++.|+.+++.+.+..+. |. ... --..+..|.+.|.+++|.+++++..+
T Consensus 84 PLESAl~v~~~I~~E~~~-~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 84 PLESALMVLESIEKEFSL-PETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred hHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 378899999988876654 21 111 12235567888999999999888876
No 391
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=63.29 E-value=25 Score=24.98 Aligned_cols=54 Identities=19% Similarity=0.140 Sum_probs=27.8
Q ss_pred ccCChhHHH----HHHHHHHhcCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036577 83 TTITPNEAF----CIFDYMLNMRPSP---PPVSSFNILFGCLAKNKHYDTVLSLFKRLNST 136 (470)
Q Consensus 83 ~~~~~~~A~----~~f~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 136 (470)
..|++.+|+ +.|+......... .-..+.-.+.......|++++|++.+++.++.
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 345666664 4444443333321 00122233455566677777777777776543
No 392
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=62.89 E-value=63 Score=24.50 Aligned_cols=47 Identities=15% Similarity=0.220 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 036577 271 KAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ 317 (470)
Q Consensus 271 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (470)
+..+.++.+...++.|++.....-+++|-+.+|+..|.++|+-++.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34445555556666777777777777777777777777777766544
No 393
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=62.33 E-value=1e+02 Score=26.52 Aligned_cols=101 Identities=11% Similarity=-0.030 Sum_probs=57.3
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHHcCCCHH
Q 036577 298 FCYANDWNEAKCLLIEMMDQGVQPNVV-TFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNA-FVYNTLMDGFCLTGRVN 375 (470)
Q Consensus 298 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~ 375 (470)
|.....++.|+..|.+.+.. .|+.. -|+.-+.++.+..+++.+..=-.+.++. .||. ...-.+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 45556677777766666554 45553 3455566677777777776666666554 3333 23334555566667777
Q ss_pred HHHHHHHHHHH----CCCCCCHHHHHHHHHH
Q 036577 376 RAKELFVSMES----NRCMHDVFSYSILING 402 (470)
Q Consensus 376 ~A~~~~~~~~~----~~~~~~~~~~~~l~~~ 402 (470)
+|+..+++..+ ..+++....+..|..+
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 77777766532 2233334444444433
No 394
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=62.31 E-value=24 Score=22.83 Aligned_cols=30 Identities=20% Similarity=0.180 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 036577 392 DVFSYSILINGYCKNKEIEGALSLYSEMLS 421 (470)
Q Consensus 392 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (470)
|-.-.-.+|.+|...|++++|.++++++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333344566667777777777776666643
No 395
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=61.54 E-value=1.1e+02 Score=26.79 Aligned_cols=80 Identities=15% Similarity=0.235 Sum_probs=42.3
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHH-HHH
Q 036577 357 NAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYN-TLF 435 (470)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~ 435 (470)
++.....+...|.+.|++.+|+..|-.-. .++...+..++..+...|...++ ..|- ..+
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~----~~~~~~~~~ll~~~~~~~~~~e~----------------dlfi~RaV 148 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGT----DPSAFAYVMLLEEWSTKGYPSEA----------------DLFIARAV 148 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTSS--H----------------HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcC----ChhHHHHHHHHHHHHHhcCCcch----------------hHHHHHHH
Confidence 56777788888889999888887763211 12222222234333333433332 2221 123
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 036577 436 IGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 436 ~~~~~~g~~~~A~~~~~~m~~ 456 (470)
--|.-.|+...|...++...+
T Consensus 149 L~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 149 LQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp HHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 345566778888877777664
No 396
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=60.85 E-value=57 Score=23.14 Aligned_cols=22 Identities=18% Similarity=0.054 Sum_probs=12.3
Q ss_pred HHHHHHcCChhHHHHHHHHHHH
Q 036577 400 INGYCKNKEIEGALSLYSEMLS 421 (470)
Q Consensus 400 ~~~~~~~g~~~~A~~~~~~~~~ 421 (470)
.......|++++|...+++.++
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 3344455666666666666554
No 397
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=60.80 E-value=58 Score=24.77 Aligned_cols=75 Identities=16% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHHHHhcCCHHHHHHHHH
Q 036577 374 VNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVV-IYNTLFIGLFEIHQVERAFKLFD 452 (470)
Q Consensus 374 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~ 452 (470)
++++...|....... |-.-|-.+--.|+..-+ ++.++|+.|..+|+--... .|......+...|++++|.++|+
T Consensus 49 Ler~~~~f~~~~~Y~---nD~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 49 LERCIRKFKDDERYK---NDERYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHTTSGGGT---T-HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHhhhHhhc---CCHHHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q ss_pred H
Q 036577 453 E 453 (470)
Q Consensus 453 ~ 453 (470)
.
T Consensus 124 ~ 124 (126)
T PF08311_consen 124 L 124 (126)
T ss_dssp H
T ss_pred h
No 398
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=60.36 E-value=2.3e+02 Score=29.91 Aligned_cols=167 Identities=13% Similarity=0.082 Sum_probs=82.9
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCh-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 036577 83 TTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHY-------DTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155 (470)
Q Consensus 83 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 155 (470)
..-..++|.++|+.+.+.+|. .-+.....+-....+.... ++.+++-+..++ .-|.......+. ++.
T Consensus 1087 ~kl~~e~~~k~~~~l~s~ypd-~lpll~~~l~kl~~~sD~~kE~~~ki~eIl~~A~~Vi~---~~D~eaL~~y~~--~k~ 1160 (1304)
T KOG1114|consen 1087 SKLADEEAEKIYNYLKSSYPD-YLPLLEVRLAKLMQKSDAVKETNKKIEEILSAADSVIQ---EIDTEALARYYA--LKE 1160 (1304)
T ss_pred HHhhHHHHHHHHHHHHHhCcc-cchHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHH---hhcHHHHHHHHh--ccc
Confidence 333567799999999998885 2233333333332222222 222222222222 123333322211 133
Q ss_pred CCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------------------HHHHHHHHHHHHhcCCCCCcc
Q 036577 156 GRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESR----------------------IMEAAALFTKLKAFGCEPNVI 213 (470)
Q Consensus 156 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------------------~~~a~~~~~~~~~~g~~~~~~ 213 (470)
....+|..+-.+|.++ -+.++.++++.|. .+.-.+.|.++.+.--.-|..
T Consensus 1161 D~r~da~klk~~me~q--------k~tli~AL~kKg~a~ak~e~l~g~~e~daeee~s~ld~~~e~y~el~kw~d~~dsK 1232 (1304)
T KOG1114|consen 1161 DTRPDAVKLKKKMEKQ--------KDTLIDALVKKGEAFAKYEALKGHKEQDAEEELSKLDSYNENYQELLKWLDASDSK 1232 (1304)
T ss_pred CCcchHHHHHHHHHHH--------HHHHHHHHHHhhhHHhhhhhhcccccccchhhhhhhhhHHHHHHHHHHHhhcCCch
Confidence 3344577777776643 2345555554432 223334444444331123444
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCC
Q 036577 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGF 268 (470)
Q Consensus 214 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 268 (470)
++..-..-+...|++..+++++.++.+..+ ..++...|..++..+...|-
T Consensus 1233 ~~~~a~~ha~~~~~yGr~lK~l~kliee~~-----es~t~~~~~~~~el~~~Lgw 1282 (1304)
T KOG1114|consen 1233 VWQIAKKHAKALGQYGRALKALLKLIEENG-----ESATKDVAVLLAELLENLGW 1282 (1304)
T ss_pred heehhHHHHHHHHHHHHHHHHHHHHHHhcc-----ccchhHHHHHHHHHHHHhCc
Confidence 555555555667888888888888777553 24555555555555555543
No 399
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=60.24 E-value=43 Score=25.33 Aligned_cols=47 Identities=4% Similarity=0.039 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 376 RAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 376 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
+..+-+......++.|+.......+.++-+.+++..|+++|+-...+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45555666667778888888888888888888888888888887764
No 400
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=60.09 E-value=1.4e+02 Score=28.06 Aligned_cols=57 Identities=14% Similarity=0.093 Sum_probs=41.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHH--hcCCcchHHHHHHHHHhC
Q 036577 114 FGCLAKNKHYDTVLSLFKRLNSTGLFPDLY--TYNILINCFC--KMGRVSPGFVVLGRILRS 171 (470)
Q Consensus 114 ~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~--~~~~li~~~~--~~g~~~~a~~~~~~~~~~ 171 (470)
+..+...++|..|.++|+.+..+ ++++.. .+..+..+|. ...++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455789999999999999887 555554 4555555554 455677888888887764
No 401
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=60.07 E-value=1.3e+02 Score=27.29 Aligned_cols=57 Identities=19% Similarity=0.198 Sum_probs=32.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc---CCCCCHhHHH--HHHHHHHcCCCHHHHHHHHHHHHH
Q 036577 330 MDELCKNGKMDEASRLLDLMIQI---GVRPNAFVYN--TLMDGFCLTGRVNRAKELFVSMES 386 (470)
Q Consensus 330 ~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~ 386 (470)
+...-+.++.++|.++++++.+. .-.|+...|. ..++.+...|+..++.+.+++..+
T Consensus 82 l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 82 LVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34444555677777777776653 1234444443 344555566777777766666554
No 402
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=59.64 E-value=12 Score=28.61 Aligned_cols=17 Identities=24% Similarity=0.536 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhCCCCCC
Q 036577 125 TVLSLFKRLNSTGLFPD 141 (470)
Q Consensus 125 ~A~~~~~~m~~~~~~~~ 141 (470)
.|..+|++|++.|-+||
T Consensus 113 DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 113 DAYAVFRKMLERGNPPD 129 (140)
T ss_pred cHHHHHHHHHhCCCCCc
Confidence 34444444444444443
No 403
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=59.12 E-value=22 Score=31.48 Aligned_cols=40 Identities=23% Similarity=0.185 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 036577 108 SSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNI 147 (470)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ 147 (470)
.-|+.-|....+.|++++|+.++++..+.|+.--..+|-.
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 3467888888888888888888888888886554444443
No 404
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.10 E-value=1.6e+02 Score=27.62 Aligned_cols=167 Identities=13% Similarity=0.033 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC---------CCC
Q 036577 107 VSSFNILFGCLAKNKHYDTVLSLFKRLNST--GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSC---------FTP 175 (470)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---------~~~ 175 (470)
...+.-+...|...|+++.|++.|.+...- ........|..+|..-.-.|+|.....+..+..+.. +++
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 456777889999999999999999885432 112334567777777788899888887777766541 233
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-C-----CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccc
Q 036577 176 DAVTFNSLIKGLCAESRIMEAAALFTKLKAF-G-----CEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVC 249 (470)
Q Consensus 176 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-g-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 249 (470)
....+..|.....+ ++..|.+.|-..... . +.|...+....+.+++-.++-+--+.+..... +..-.
T Consensus 230 kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~-----Fk~fl 302 (466)
T KOG0686|consen 230 KLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNES-----FKLFL 302 (466)
T ss_pred chHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchh-----hhhHH
Confidence 34444444444433 666666655332211 1 12333333333444443333222222211110 00001
Q ss_pred CCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 036577 250 EPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE 282 (470)
Q Consensus 250 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 282 (470)
...+..+..+...|. +++...+++++++...
T Consensus 303 el~Pqlr~il~~fy~--sky~~cl~~L~~~k~~ 333 (466)
T KOG0686|consen 303 ELEPQLREILFKFYS--SKYASCLELLREIKPR 333 (466)
T ss_pred hcChHHHHHHHHHhh--hhHHHHHHHHHHhccc
Confidence 233445555555443 6788888888887654
No 405
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=59.08 E-value=38 Score=20.50 Aligned_cols=30 Identities=10% Similarity=0.043 Sum_probs=13.9
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036577 370 LTGRVNRAKELFVSMESNRCMHDVFSYSIL 399 (470)
Q Consensus 370 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 399 (470)
+.|-.+++...+++|.+.|+.-+...|..+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 344444455555555444444444444433
No 406
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=58.38 E-value=2.2e+02 Score=29.11 Aligned_cols=121 Identities=15% Similarity=0.195 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhcCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH----------HHHHHHHHHHhcC
Q 036577 89 EAFCIFDYMLNMRPS--PPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLY----------TYNILINCFCKMG 156 (470)
Q Consensus 89 ~A~~~f~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~----------~~~~li~~~~~~g 156 (470)
+--..+++|.++-.. ...+.+-..++-.|....+++..+++.+.+.+. ||.. .|...++---+-|
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~G 257 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPG 257 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCc
Confidence 334456666654433 234566677777788888899888888888764 3322 1222233223446
Q ss_pred CcchHHHHHHHHHhCC--CCCCHHH-----HHHH--HHHHHhcCCHHHHHHHHHHHHhcCCCCCcch
Q 036577 157 RVSPGFVVLGRILRSC--FTPDAVT-----FNSL--IKGLCAESRIMEAAALFTKLKAFGCEPNVIT 214 (470)
Q Consensus 157 ~~~~a~~~~~~~~~~~--~~~~~~~-----~~~l--~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~ 214 (470)
+-++|+...-.+++.. +.||... |..+ -..|...+..+.|.+.|++.-+ +.|+..+
T Consensus 258 DRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~s 322 (1226)
T KOG4279|consen 258 DRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYS 322 (1226)
T ss_pred cHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhc
Confidence 6677777666665532 3344322 1111 1123344455666677766654 3454433
No 407
>PRK13342 recombination factor protein RarA; Reviewed
Probab=58.19 E-value=1.7e+02 Score=27.81 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036577 267 GFVDKAKELFLKMKDENINPNVVTYNSLIHG 297 (470)
Q Consensus 267 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 297 (470)
++.+.|+.++..|.+.|..|....-..++.+
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5566666666666666555544443333333
No 408
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=57.98 E-value=2.2e+02 Score=28.89 Aligned_cols=193 Identities=15% Similarity=0.152 Sum_probs=113.7
Q ss_pred hhHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCCHH-----HHHHHHHHHHhcCCc
Q 036577 87 PNEAFCIFDYMLNMRPSPPP--VSSFNILFGCLA-KNKHYDTVLSLFKRLNSTGLFPDLY-----TYNILINCFCKMGRV 158 (470)
Q Consensus 87 ~~~A~~~f~~~~~~~~~~~~--~~~~~~l~~~~~-~~~~~~~A~~~~~~m~~~~~~~~~~-----~~~~li~~~~~~g~~ 158 (470)
+..|++.++.+.+..+.+|. ..++-.++..+. ...+++.|...+++....--.++.. ....++..+.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 35678888888854333233 455667777776 6789999999999875443223222 223456666666665
Q ss_pred chHHHHHHHHHhCC----CCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcC---CCCCcchHHHHHHHH--HhcCCh
Q 036577 159 SPGFVVLGRILRSC----FTPDAVTFNSL-IKGLCAESRIMEAAALFTKLKAFG---CEPNVITYSTLINGL--CRTGHT 228 (470)
Q Consensus 159 ~~a~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~g---~~~~~~~~~~l~~~~--~~~g~~ 228 (470)
. |...+++.++.- ..+-...+..+ +..+...+++..|.+.++.+...- ..+...++..++.+. .+.+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 5 888888876631 12223333333 333334489999999998886542 123333444444443 345666
Q ss_pred HHHHHHHHHHHhcCCCC---CcccCCCHhhHHHHHHHHH--hCCCHHHHHHHHHHHH
Q 036577 229 IVALNLFEEMANGNGEI---GVVCEPNTVTYTTIIDGLC--KEGFVDKAKELFLKMK 280 (470)
Q Consensus 229 ~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~ 280 (470)
+++.+.++++....... +....|...+|..+++.++ ..|+++.+...++++.
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777774332211 0002456667777777665 4677667666655543
No 409
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.37 E-value=7.9 Score=34.68 Aligned_cols=120 Identities=14% Similarity=0.026 Sum_probs=79.3
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHH
Q 036577 333 LCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGA 412 (470)
Q Consensus 333 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 412 (470)
....|.++.|++.+...++.+. +....|..-..++.+.+....|++-+....+.+ +....-|-.-..+-...|+|++|
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp-~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein-~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNP-PLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN-PDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HhcCcchhhhhcccccccccCC-chhhhcccccceeeeccCCchhhhhhhhhhccC-cccccccchhhHHHHHhhchHHH
Confidence 3456788888888888888753 366677777778888888888888887777653 11223333333444557889999
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 413 LSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 413 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
...+....+.++.+....| +=...-..+..++-...+++.++
T Consensus 202 a~dl~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHHHHH
Confidence 9999988888776655443 33344445555555555555553
No 410
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=57.01 E-value=1.6e+02 Score=32.15 Aligned_cols=150 Identities=15% Similarity=0.073 Sum_probs=92.0
Q ss_pred ccccCChhHHHH------HHHHH-HhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH-------HhCCCCCCHHHHH
Q 036577 81 DITTITPNEAFC------IFDYM-LNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRL-------NSTGLFPDLYTYN 146 (470)
Q Consensus 81 ~~~~~~~~~A~~------~f~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m-------~~~~~~~~~~~~~ 146 (470)
....|.+.+|.+ +++.. ....+ .....|..+...+-+.++.++|+..=.+. .....+.+...|.
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~--~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHP--EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcch--hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Confidence 334445555555 77633 34444 36788899999999999999998765442 2223233455677
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhC-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------CCCc
Q 036577 147 ILINCFCKMGRVSPGFVVLGRILRS-----C--FTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGC-------EPNV 212 (470)
Q Consensus 147 ~li~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~-------~~~~ 212 (470)
.+...+...++...|...+.+.... | .+|...+++.+-..+...++++.|.++.+....... -.+.
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~ 1099 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETA 1099 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhh
Confidence 7766666777888888877776542 1 244455566666666667889999998888765321 1123
Q ss_pred chHHHHHHHHHhcCChHHHH
Q 036577 213 ITYSTLINGLCRTGHTIVAL 232 (470)
Q Consensus 213 ~~~~~l~~~~~~~g~~~~a~ 232 (470)
.++..+...+...+++..|+
T Consensus 1100 ~~~~~~a~l~~s~~dfr~al 1119 (1236)
T KOG1839|consen 1100 LSYHALARLFESMKDFRNAL 1119 (1236)
T ss_pred hHHHHHHHHHhhhHHHHHHH
Confidence 34445544444445544443
No 411
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=56.55 E-value=1.7e+02 Score=27.24 Aligned_cols=57 Identities=14% Similarity=0.042 Sum_probs=33.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHH-hCCCHHHHHHHHHHHHh
Q 036577 219 INGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLC-KEGFVDKAKELFLKMKD 281 (470)
Q Consensus 219 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~ 281 (470)
+..+.+.|-+..|+++.+-+..-+ ...|+.....+|+.|+ +.++++--+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLd------p~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLD------PDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcC------CCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 455666777777777777776665 1225555555666554 45566656666655443
No 412
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=56.40 E-value=66 Score=26.61 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=17.6
Q ss_pred CCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 036577 355 RPNAFVYNTLMDGFCLTGRVNRAKELFVSMES 386 (470)
Q Consensus 355 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 386 (470)
.|++.+|..++.++...|+.++|.+..+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555555555555555555555544
No 413
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=56.09 E-value=92 Score=28.07 Aligned_cols=114 Identities=12% Similarity=0.112 Sum_probs=60.4
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHH
Q 036577 86 TPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVL 165 (470)
Q Consensus 86 ~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 165 (470)
...+|.++|..+++.+. .+|+. -..+...|.. .+.+.+++..--.+.-..|.-+..+.|+..+|.+.+
T Consensus 231 Ti~~AE~l~k~ALka~e-----~~yr~-sqq~qh~~~~------~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~ 298 (556)
T KOG3807|consen 231 TIVDAERLFKQALKAGE-----TIYRQ-SQQCQHQSPQ------HEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIM 298 (556)
T ss_pred hHHHHHHHHHHHHHHHH-----HHHhh-HHHHhhhccc------hhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 46778888888877432 23331 1112222222 233445432222233344555556778888888888
Q ss_pred HHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 036577 166 GRILRSCF-TPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPN 211 (470)
Q Consensus 166 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~ 211 (470)
+++.+.-. ..-..+...|+.++....-+.++..++.+.-+...+.+
T Consensus 299 RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkS 345 (556)
T KOG3807|consen 299 RDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKS 345 (556)
T ss_pred HHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcch
Confidence 88766421 00112334577777776666666666666555444433
No 414
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=55.46 E-value=1.6e+02 Score=26.73 Aligned_cols=77 Identities=21% Similarity=0.245 Sum_probs=53.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHC---CCCCCHhHHH--HHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHh-H
Q 036577 292 NSLIHGFCYANDWNEAKCLLIEMMDQ---GVQPNVVTFN--VIMDELCKNGKMDEASRLLDLMIQ-----IGVRPNAF-V 360 (470)
Q Consensus 292 ~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~-~ 360 (470)
..++...-+.+|.++|++.++++.+. .-.|+.+.|. .+...+...|+..++.+.+++... .++.|++. .
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~ 158 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSS 158 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhh
Confidence 34455566778999999999998764 2356666654 445677789999999999999887 46666443 3
Q ss_pred HHHHHHHH
Q 036577 361 YNTLMDGF 368 (470)
Q Consensus 361 ~~~l~~~~ 368 (470)
|..+-.-|
T Consensus 159 fY~lssqY 166 (380)
T KOG2908|consen 159 FYSLSSQY 166 (380)
T ss_pred HHHHHHHH
Confidence 44444333
No 415
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=55.25 E-value=1.5e+02 Score=32.34 Aligned_cols=160 Identities=13% Similarity=0.072 Sum_probs=97.2
Q ss_pred HHHhcCChHHHHH------HHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHH-------HhCCCCCCHHHHHH
Q 036577 116 CLAKNKHYDTVLS------LFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI-------LRSCFTPDAVTFNS 182 (470)
Q Consensus 116 ~~~~~~~~~~A~~------~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-------~~~~~~~~~~~~~~ 182 (470)
.....|.+.++.+ ++......-.++....|..+...+-+.|+.++|...=... .....+.+...|..
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 3445666666666 6664333323566678888889999999999888754432 22222334556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc-----C--CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CcccCCCHh
Q 036577 183 LIKGLCAESRIMEAAALFTKLKAF-----G--CEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEI-GVVCEPNTV 254 (470)
Q Consensus 183 l~~~~~~~g~~~~a~~~~~~~~~~-----g--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~ 254 (470)
+.......+....|...+.+.... | .|+...+++.+-..+...++++.|+++.+.+....... +...-.+..
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~ 1100 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETAL 1100 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhh
Confidence 666666777877887777765432 2 23444555555555556688899999988887644321 111234555
Q ss_pred hHHHHHHHHHhCCCHHHHHHH
Q 036577 255 TYTTIIDGLCKEGFVDKAKEL 275 (470)
Q Consensus 255 ~~~~l~~~~~~~g~~~~a~~~ 275 (470)
++..+.+.+...+++..|...
T Consensus 1101 ~~~~~a~l~~s~~dfr~al~~ 1121 (1236)
T KOG1839|consen 1101 SYHALARLFESMKDFRNALEH 1121 (1236)
T ss_pred HHHHHHHHHhhhHHHHHHHHH
Confidence 666666666666665555443
No 416
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=54.96 E-value=1.3e+02 Score=25.47 Aligned_cols=26 Identities=8% Similarity=0.064 Sum_probs=17.4
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 397 SILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 397 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
-.+.....+.|+.++|.+.|.+++..
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 34555566677777777777777755
No 417
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=54.72 E-value=1.9e+02 Score=27.19 Aligned_cols=55 Identities=13% Similarity=0.179 Sum_probs=30.3
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHh--HHHHHHHHHH--HcCCHHHHHHHHHHHHHc
Q 036577 297 GFCYANDWNEAKCLLIEMMDQGVQPNVV--TFNVIMDELC--KNGKMDEASRLLDLMIQI 352 (470)
Q Consensus 297 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~g~~~~a~~~~~~~~~~ 352 (470)
.+.+.+++..|.+++..+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344667777777777777665 344333 3333333433 244566666666665543
No 418
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=54.43 E-value=2.5e+02 Score=28.50 Aligned_cols=88 Identities=9% Similarity=0.143 Sum_probs=37.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHhHHHHHHHHHHc---
Q 036577 295 IHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGV-RPNAFVYNTLMDGFCL--- 370 (470)
Q Consensus 295 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~--- 370 (470)
...+.-.|+++.|++.+.. ..+...+.+++...+..| |-+......-..+..... .|...-+..|+..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~---gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYY---GLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHT---T------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHc---CCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3445567888888888876 122244455554444332 222211111122222211 1122456777777764
Q ss_pred CCCHHHHHHHHHHHHHC
Q 036577 371 TGRVNRAKELFVSMESN 387 (470)
Q Consensus 371 ~g~~~~A~~~~~~~~~~ 387 (470)
..+..+|.+++-.+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 46788888887666543
No 419
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=53.15 E-value=2.8e+02 Score=28.72 Aligned_cols=97 Identities=7% Similarity=-0.016 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHhCCCCCCHHHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK---MGRVSPGFVVLGRILRSCFTPDAVTFNS 182 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 182 (470)
+...+..||..+.+.|++++....-..|.+.- +.+...|...+..... .+...++..+|++.+..-. ++..|.-
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~--~v~iw~e 188 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYN--SVPIWEE 188 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccc--cchHHHH
Confidence 66778899999999999998887777777653 5566777776655443 3566677777777765432 3333333
Q ss_pred HHHHH-------HhcCCHHHHHHHHHHHHh
Q 036577 183 LIKGL-------CAESRIMEAAALFTKLKA 205 (470)
Q Consensus 183 l~~~~-------~~~g~~~~a~~~~~~~~~ 205 (470)
.+... .+.++++....+|.+...
T Consensus 189 ~~~y~~~~~~~~~~~~d~k~~R~vf~ral~ 218 (881)
T KOG0128|consen 189 VVNYLVGFGNVAKKSEDYKKERSVFERALR 218 (881)
T ss_pred HHHHHHhccccccccccchhhhHHHHHHHh
Confidence 33322 344677888888887654
No 420
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=52.75 E-value=1.3e+02 Score=24.70 Aligned_cols=20 Identities=10% Similarity=0.129 Sum_probs=10.2
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 036577 186 GLCAESRIMEAAALFTKLKA 205 (470)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~ 205 (470)
.|.+.|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 34455555555555555543
No 421
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=51.75 E-value=57 Score=20.31 Aligned_cols=23 Identities=13% Similarity=0.117 Sum_probs=11.5
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHC
Q 036577 365 MDGFCLTGRVNRAKELFVSMESN 387 (470)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~~ 387 (470)
.-++.+.|++++|.+..+.+.+.
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhh
Confidence 33445555555555555555543
No 422
>PRK10941 hypothetical protein; Provisional
Probab=51.70 E-value=1.7e+02 Score=25.84 Aligned_cols=59 Identities=15% Similarity=-0.042 Sum_probs=30.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 363 TLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 363 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
.+-.+|.+.++++.|.++.+.+.... +.+..-+.--.-.|.+.|.+..|..=++..++.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 34444555555555555555555542 224444444444455555555555555555443
No 423
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=51.56 E-value=67 Score=29.02 Aligned_cols=98 Identities=11% Similarity=0.031 Sum_probs=58.7
Q ss_pred HHHHhccCCCCccccCChhHHHHHHHHHHhcCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 036577 70 LRERFKSSGEGDITTITPNEAFCIFDYMLNMRPSP--PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNI 147 (470)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ 147 (470)
+++.++-.|..+.+..++..|...|..-+...... .+...|+.-..+-...|++..|+.=....+... +-....|-.
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~-P~h~Ka~~R 158 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK-PTHLKAYIR 158 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhhhh
Confidence 56677777777777777777877777666543321 235556666666666777777777666666553 223334444
Q ss_pred HHHHHHhcCCcchHHHHHHHH
Q 036577 148 LINCFCKMGRVSPGFVVLGRI 168 (470)
Q Consensus 148 li~~~~~~g~~~~a~~~~~~~ 168 (470)
=..++....++++|..+.+..
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEG 179 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhh
Confidence 444555555555555554443
No 424
>PRK09857 putative transposase; Provisional
Probab=51.38 E-value=1.6e+02 Score=26.36 Aligned_cols=64 Identities=17% Similarity=0.165 Sum_probs=29.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 036577 362 NTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP 426 (470)
Q Consensus 362 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 426 (470)
..++......|+.++-.++++.+.+. .+.......++..-+.+.|.-++++++.++|...|+.+
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 34444444455555555555544443 22222333344444555555455555555555555443
No 425
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=51.26 E-value=26 Score=26.83 Aligned_cols=31 Identities=23% Similarity=0.497 Sum_probs=19.5
Q ss_pred HhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036577 153 CKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIK 185 (470)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (470)
...|.-.+|..+|.+|++.|-+||. |+.|+.
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 3445666677777777777766653 445544
No 426
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=50.87 E-value=1.6e+02 Score=25.30 Aligned_cols=98 Identities=18% Similarity=0.187 Sum_probs=57.5
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------CcccCCCHhhHHHHH
Q 036577 187 LCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEI------GVVCEPNTVTYTTII 260 (470)
Q Consensus 187 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~ 260 (470)
|.+..+.+--.++.+-.+..+++-+.....+++ +...||..+|+.-++.-....+.. .....|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 444444444445555555556666666665554 446888888888877765543221 112345555555555
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCC
Q 036577 261 DGLCKEGFVDKAKELFLKMKDENINPN 287 (470)
Q Consensus 261 ~~~~~~g~~~~a~~~~~~~~~~~~~~~ 287 (470)
..|. .+++++|.+++.++.+.|+.|.
T Consensus 247 ~~~~-~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 247 QACL-KRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred HHHH-hccHHHHHHHHHHHHHcCCCHH
Confidence 5443 4567777777777777776654
No 427
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=50.64 E-value=1.2e+02 Score=27.08 Aligned_cols=70 Identities=13% Similarity=0.189 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----------cCChhHH
Q 036577 343 SRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCK----------NKEIEGA 412 (470)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~A 412 (470)
.++++.+.+.++.|.-..+.-+.-.+.+.=.+...+.+|+.+.. |..-|..++..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 46778888888888888887777777888888888999988876 33336666666653 3555555
Q ss_pred HHHHH
Q 036577 413 LSLYS 417 (470)
Q Consensus 413 ~~~~~ 417 (470)
.++++
T Consensus 338 mkLLQ 342 (370)
T KOG4567|consen 338 MKLLQ 342 (370)
T ss_pred HHHHh
Confidence 55543
No 428
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=50.59 E-value=2e+02 Score=26.15 Aligned_cols=97 Identities=14% Similarity=0.084 Sum_probs=58.4
Q ss_pred HhhHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHH-HccCCHHHHHHHHHHHHHCCCCCCH----
Q 036577 253 TVTYTTIIDGLCKEGFVDKAKELFLKMKDE----NINPNVVTYNSLIHGF-CYANDWNEAKCLLIEMMDQGVQPNV---- 323 (470)
Q Consensus 253 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~-~~~~~~~~a~~~~~~~~~~~~~~~~---- 323 (470)
...+......||+-|+.+.|++.+.+-.++ |.+.|+.-+..-+..+ ....-..+-++..+.+.+.|...+.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 455667778899999999998888766543 6666766555444333 2333344555555566666543332
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036577 324 VTFNVIMDELCKNGKMDEASRLLDLMIQ 351 (470)
Q Consensus 324 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 351 (470)
.+|..+ .|....++.+|-.+|-+...
T Consensus 184 KvY~Gl--y~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 184 KVYQGL--YCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHH--HHHHHHhHHHHHHHHHHHcc
Confidence 233332 23345678888888877654
No 429
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=50.31 E-value=27 Score=19.05 Aligned_cols=22 Identities=14% Similarity=0.359 Sum_probs=13.5
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhh
Q 036577 443 QVERAFKLFDEMRRDGVAADTWTY 466 (470)
Q Consensus 443 ~~~~A~~~~~~m~~~g~~p~~~~~ 466 (470)
.++.|..+|++... +.|+..+|
T Consensus 2 E~dRAR~IyeR~v~--~hp~~k~W 23 (32)
T PF02184_consen 2 EFDRARSIYERFVL--VHPEVKNW 23 (32)
T ss_pred hHHHHHHHHHHHHH--hCCCchHH
Confidence 35667777777766 45665554
No 430
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=49.66 E-value=1e+02 Score=22.65 Aligned_cols=79 Identities=23% Similarity=0.193 Sum_probs=41.2
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHH
Q 036577 86 TPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVL 165 (470)
Q Consensus 86 ~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 165 (470)
..++|-.+.+++...+.. ...+--.-+..+...|+|++|+ . .- .....||...|..|. -.+.|--+++...+
T Consensus 21 cH~EA~tIa~wL~~~~~~--~E~v~lIr~~sLmNrG~Yq~AL--l-~~-~~~~~pdL~p~~AL~--a~klGL~~~~e~~l 92 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM--EEVVALIRLSSLMNRGDYQEAL--L-LP-QCHCYPDLEPWAALC--AWKLGLASALESRL 92 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT--HHHHHHHHHHHHHHTT-HHHHH--H-HH-TTS--GGGHHHHHHH--HHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcH--HHHHHHHHHHHHHhhHHHHHHH--H-hc-ccCCCccHHHHHHHH--HHhhccHHHHHHHH
Confidence 457777777777665432 2222233344566778888772 1 11 112256666555443 34667667777777
Q ss_pred HHHHhCC
Q 036577 166 GRILRSC 172 (470)
Q Consensus 166 ~~~~~~~ 172 (470)
.++...|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 7666554
No 431
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=49.61 E-value=94 Score=27.04 Aligned_cols=57 Identities=14% Similarity=0.004 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh----cC-CCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 036577 182 SLIKGLCAESRIMEAAALFTKLKA----FG-CEPNVITYSTLINGLCRTGHTIVALNLFEEM 238 (470)
Q Consensus 182 ~l~~~~~~~g~~~~a~~~~~~~~~----~g-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 238 (470)
.+...|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+..+.+.-++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345555555566666555555421 11 1223344445555555566655555544333
No 432
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=49.25 E-value=1.1e+02 Score=26.57 Aligned_cols=57 Identities=18% Similarity=0.123 Sum_probs=30.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHH----CCC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036577 398 ILINGYCKNKEIEGALSLYSEMLS----KGI-KPDVVIYNTLFIGLFEIHQVERAFKLFDEM 454 (470)
Q Consensus 398 ~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 454 (470)
.+..-|.+.|++++|.++|+.+.. .|. .+...+...+..++.+.|+.++...+.=++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 455556666666666666665532 122 122334445556666666666666554433
No 433
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=48.87 E-value=2.1e+02 Score=28.62 Aligned_cols=76 Identities=8% Similarity=-0.018 Sum_probs=25.8
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036577 273 KELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMI 350 (470)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 350 (470)
....+.+..+-...+...-..++..|.+.|-.+.+.++.+.+-..- ....-|..-+..+.+.|+...+..+.+.+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~--~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRL--LKEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3333443333222344444555555666666665555555443321 122334444555555555555544444444
No 434
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=48.53 E-value=1.6e+02 Score=24.44 Aligned_cols=55 Identities=18% Similarity=0.350 Sum_probs=28.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCC--------------CCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 036577 293 SLIHGFCYANDWNEAKCLLIEMMDQGV--------------QPNVVTFNVIMDELCKNGKMDEASRLLD 347 (470)
Q Consensus 293 ~li~~~~~~~~~~~a~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 347 (470)
+++..|.+..+|.+..++++.|.+..+ .+.-..-|.....+.+.|..+.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 345556666667777777666654321 1122333444445555555555555554
No 435
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=48.33 E-value=2.1e+02 Score=25.93 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=11.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Q 036577 361 YNTLMDGFCLTGRVNRAKELFVS 383 (470)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~ 383 (470)
+......|++.|+-+.|.+.+..
T Consensus 107 ~~~kaeYycqigDkena~~~~~~ 129 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRK 129 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHH
Confidence 33444455555555555554443
No 436
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=48.22 E-value=81 Score=26.91 Aligned_cols=58 Identities=12% Similarity=0.130 Sum_probs=49.7
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 036577 82 ITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDL 142 (470)
Q Consensus 82 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~ 142 (470)
.+.++.+.|.+++++++...|. ....|-.+...--+.|+++.|.+.|++..+.+ ++|.
T Consensus 6 ~~~~D~~aaaely~qal~lap~--w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld-p~D~ 63 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPE--WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD-PEDH 63 (287)
T ss_pred cccCChHHHHHHHHHHhhcCch--hhhhhhhcchhhhhcccHHHHHHHHHHHHcCC-cccc
Confidence 4567889999999999998776 88899999999999999999999999998875 4443
No 437
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=48.14 E-value=1.1e+02 Score=22.54 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 036577 395 SYSILINGYCKNKEIEGALSLYSEMLS 421 (470)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (470)
-|..++..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477888888888888888888888776
No 438
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=47.87 E-value=1.3e+02 Score=23.50 Aligned_cols=50 Identities=10% Similarity=0.096 Sum_probs=24.2
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH
Q 036577 345 LLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFS 395 (470)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 395 (470)
+...+.+.|.+++..= ..+++.+...++.-.|.++++.+.+.+...+..|
T Consensus 8 ~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 8 AIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 3344445555544332 2344555555555666666666665543333333
No 439
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=47.78 E-value=41 Score=29.89 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=14.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 036577 361 YNTLMDGFCLTGRVNRAKELFVSMESNR 388 (470)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 388 (470)
|+..|....+.||+++|+.++++..+.|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG 287 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLG 287 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3445555555555555555555555544
No 440
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.97 E-value=93 Score=30.93 Aligned_cols=90 Identities=10% Similarity=0.076 Sum_probs=67.3
Q ss_pred CccccCChhHHHHHHHHHHhcCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 036577 80 GDITTITPNEAFCIFDYMLNMRPSPP----PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155 (470)
Q Consensus 80 ~~~~~~~~~~A~~~f~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 155 (470)
.+++..++..+.+.|...+...+... -+.....+.-+|....+.|.|.+.+++..+.+ +.+..+-..+..+....
T Consensus 363 ~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~~~~~~~~~E 441 (872)
T KOG4814|consen 363 KLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQLLMLQSFLAE 441 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHh
Confidence 45667789999999998887665410 12345566777888899999999999998875 45666667777888888
Q ss_pred CCcchHHHHHHHHHh
Q 036577 156 GRVSPGFVVLGRILR 170 (470)
Q Consensus 156 g~~~~a~~~~~~~~~ 170 (470)
|.-++|+.....+..
T Consensus 442 ~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 442 DKSEEALTCLQKIKS 456 (872)
T ss_pred cchHHHHHHHHHHHh
Confidence 999999887766643
No 441
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=46.05 E-value=83 Score=24.31 Aligned_cols=51 Identities=18% Similarity=0.141 Sum_probs=28.8
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036577 86 TPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNST 136 (470)
Q Consensus 86 ~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 136 (470)
+..+-+.+|+.+.+..+..........|.-++.+.++++.++++.+.+.+.
T Consensus 50 dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 455666666666652222133344445555666667777776666666554
No 442
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.32 E-value=2e+02 Score=24.77 Aligned_cols=260 Identities=8% Similarity=0.013 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-
Q 036577 125 TVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKL- 203 (470)
Q Consensus 125 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~- 203 (470)
++.++..+..+.......+. .+.-.+++++|.+++.+ -..+|--..++..|=..|-+.
T Consensus 3 ~a~~l~k~AEkK~~~s~gF~------lfgg~~k~eeAadl~~~---------------Aan~yklaK~w~~AG~aflkaA 61 (288)
T KOG1586|consen 3 DAVQLMKKAEKKLNGSGGFL------LFGGSNKYEEAAELYER---------------AANMYKLAKNWSAAGDAFLKAA 61 (288)
T ss_pred cHHHHHHHHHHhcccCCccc------ccCCCcchHHHHHHHHH---------------HHHHHHHHHhHHHHHHHHHHHH
Q ss_pred ---HhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 036577 204 ---KAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMK 280 (470)
Q Consensus 204 ---~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 280 (470)
.+.|-+.|..+-..-..-|.+.++.++|...++..+ ..|...|++..|-+....+-
T Consensus 62 ~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~ai---------------------eIyt~~Grf~~aAk~~~~ia 120 (288)
T KOG1586|consen 62 DLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAI---------------------EIYTDMGRFTMAAKHHIEIA 120 (288)
T ss_pred HHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHH---------------------HHHHhhhHHHHHHhhhhhHH
Q ss_pred hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhH
Q 036577 281 DENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFV 360 (470)
Q Consensus 281 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 360 (470)
+. ...+..-+..-|..|-+.++|-...+.- ......+--+...-+..+++.+|+.+|+++.+.....+.--
T Consensus 121 Ei-yEsdl~d~ekaI~~YE~Aae~yk~ees~--------ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLK 191 (288)
T KOG1586|consen 121 EI-YESDLQDFEKAIAHYEQAAEYYKGEESV--------SSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLK 191 (288)
T ss_pred HH-HhhhHHHHHHHHHHHHHHHHHHcchhhh--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Q ss_pred HHH------HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHH
Q 036577 361 YNT------LMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 434 (470)
Q Consensus 361 ~~~------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 434 (470)
|.. -+-++.-.++.-.+...++...+..+.....-=..++.-+...-+-+....+-+...+-+--.....|.+-
T Consensus 192 ys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d~e~fte~vkefDsisrLD~W~tt 271 (288)
T KOG1586|consen 192 YSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQDIEKFTEVVKEFDSISRLDQWKTT 271 (288)
T ss_pred hHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhccchHHHHHHH
Q ss_pred H
Q 036577 435 F 435 (470)
Q Consensus 435 ~ 435 (470)
+
T Consensus 272 i 272 (288)
T KOG1586|consen 272 I 272 (288)
T ss_pred H
No 443
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=45.23 E-value=1.2e+02 Score=22.27 Aligned_cols=79 Identities=11% Similarity=0.104 Sum_probs=34.5
Q ss_pred CcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 036577 157 RVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFE 236 (470)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 236 (470)
..++|..+.+.+...+. -...+--.-+..+.+.|++++|+ . .-. ....||...|.++.. .+.|-.+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL--l-~~~-~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL--L-LPQ-CHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH--H-HHT-TS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH--H-hcc-cCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 34555555555555432 12222223333455666666661 1 111 112355555544433 25666666666666
Q ss_pred HHHhcC
Q 036577 237 EMANGN 242 (470)
Q Consensus 237 ~~~~~~ 242 (470)
++...+
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 665444
No 444
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=45.08 E-value=2.3e+02 Score=25.40 Aligned_cols=116 Identities=14% Similarity=0.058 Sum_probs=61.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCC
Q 036577 293 SLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTG 372 (470)
Q Consensus 293 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 372 (470)
.++..+.+.++.......+..+. ....-...+......|++..|++++.+..+.- . ...-|+++-..- .
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l-~-~l~~~~c~~~L~---~ 171 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQLL-E-ELKGYSCVRHLS---S 171 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-H-hcccchHHHHHh---H
Confidence 34455555555555555555553 44555666777778888888888887766531 0 111111111111 1
Q ss_pred CHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 036577 373 RVNRAKELFVSMESN-----RCMHDVFSYSILINGYCKNKEIEGALSLYSEM 419 (470)
Q Consensus 373 ~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (470)
++.+-....+.+.+. -...|+..|..+..+|.-.|+.+.+.+-+...
T Consensus 172 ~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~~ 223 (291)
T PF10475_consen 172 QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQMH 223 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 222222222222211 11347788888888888888766655544444
No 445
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.51 E-value=4.6e+02 Score=28.66 Aligned_cols=121 Identities=11% Similarity=0.139 Sum_probs=73.5
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhC-C--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH----hHH
Q 036577 254 VTYTTIIDGLCKEGFVDKAKELFLKMKDE-N--INPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNV----VTF 326 (470)
Q Consensus 254 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~ 326 (470)
.-|...++.+-+.+..+.+.++-....+. + .+.-..+++.+.+.....|.+-+|...+-. .||. ...
T Consensus 984 hYYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcL 1057 (1480)
T KOG4521|consen 984 HYYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCL 1057 (1480)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHH
Confidence 45777888888888888888877666654 1 111234567777778888888888766543 3343 345
Q ss_pred HHHHHHHHHcCCHHH------------HHH-HHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHH
Q 036577 327 NVIMDELCKNGKMDE------------ASR-LLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKEL 380 (470)
Q Consensus 327 ~~l~~~~~~~g~~~~------------a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 380 (470)
..++..++.+|.++. ... +++..-+...-.....|+.|-..+...+++.+|-.+
T Consensus 1058 RqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1058 RQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 666777777776543 333 223222222222334566666666777888777544
No 446
>PRK09857 putative transposase; Provisional
Probab=44.47 E-value=2e+02 Score=25.88 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=11.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCC
Q 036577 363 TLMDGFCLTGRVNRAKELFVSMESNR 388 (470)
Q Consensus 363 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 388 (470)
+++.-+...|.-+++.++...|...|
T Consensus 245 TiAEqL~qeG~qe~~~~ia~~ml~~g 270 (292)
T PRK09857 245 TIAERLRQEGEQSKALHIAKIMLESG 270 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33444444444444444444444444
No 447
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=44.43 E-value=2.7e+02 Score=25.97 Aligned_cols=57 Identities=14% Similarity=0.135 Sum_probs=36.1
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCChhHHHHHHHHHHH
Q 036577 365 MDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYC-KNKEIEGALSLYSEMLS 421 (470)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 421 (470)
+..+.+.|-+..|.++.+-+...+..-|+.....+|+.|+ +.++++--+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 4455667777777777777777654436666666666654 45666666666666543
No 448
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=43.90 E-value=1.9e+02 Score=29.07 Aligned_cols=46 Identities=4% Similarity=0.047 Sum_probs=23.8
Q ss_pred CCccccCChhHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHhcCChH
Q 036577 79 EGDITTITPNEAFCIFDYMLNMRPS-PPPVSSFNILFGCLAKNKHYD 124 (470)
Q Consensus 79 ~~~~~~~~~~~A~~~f~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 124 (470)
+.|+..|++..+.++++........ ..-...+|..++...+.|.++
T Consensus 36 eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~ 82 (1117)
T COG5108 36 EACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFE 82 (1117)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCcc
Confidence 4455556666666666655443221 122445566666666666543
No 449
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=43.87 E-value=1.8e+02 Score=26.18 Aligned_cols=72 Identities=15% Similarity=0.217 Sum_probs=50.9
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh----------cCChHHH
Q 036577 162 FVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCR----------TGHTIVA 231 (470)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----------~g~~~~a 231 (470)
.++++.+.+.++.|.-..+..+.-.+...=.+.+++.+|+.+.. |..-|..++..||. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 46777777778888887777777777777778888888888875 33335555555542 5788888
Q ss_pred HHHHHHH
Q 036577 232 LNLFEEM 238 (470)
Q Consensus 232 ~~~~~~~ 238 (470)
.++++..
T Consensus 338 mkLLQ~y 344 (370)
T KOG4567|consen 338 MKLLQNY 344 (370)
T ss_pred HHHHhcC
Confidence 7776654
No 450
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=43.54 E-value=2.3e+02 Score=28.53 Aligned_cols=90 Identities=18% Similarity=0.255 Sum_probs=56.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCC--CCCCHhHHHHHHHHHHHcCCHHH------HHHHHHHHHHcCCCCCHhHHHHH
Q 036577 293 SLIHGFCYANDWNEAKCLLIEMMDQG--VQPNVVTFNVIMDELCKNGKMDE------ASRLLDLMIQIGVRPNAFVYNTL 364 (470)
Q Consensus 293 ~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~------a~~~~~~~~~~~~~~~~~~~~~l 364 (470)
+|..+|..+|++..+..+++...... -..-...||..+....+.|.++- |.+.++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78889999999999999998887642 22334567888888888887642 333333333 44467778777
Q ss_pred HHHHHcCCCHHHHHHHHHHHH
Q 036577 365 MDGFCLTGRVNRAKELFVSME 385 (470)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~ 385 (470)
+.+-...-.-....-++.+.+
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 766544322233333444333
No 451
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=43.03 E-value=1.5e+02 Score=22.58 Aligned_cols=59 Identities=15% Similarity=0.062 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHH-HHHHHHHhcCCHHHHHHHHHHH
Q 036577 393 VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYN-TLFIGLFEIHQVERAFKLFDEM 454 (470)
Q Consensus 393 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~m 454 (470)
..+..++..++.-.|..++|.++++.. ++.++-...| .++..|.+..+.++..++-++.
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~F---kWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKF---KWGHTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcC---CCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 334567777777888888888877655 4444444443 3778888888777776665544
No 452
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=42.48 E-value=1.3e+02 Score=22.97 Aligned_cols=74 Identities=18% Similarity=0.115 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCcchHHHHH
Q 036577 87 PNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLY-TYNILINCFCKMGRVSPGFVVL 165 (470)
Q Consensus 87 ~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~ 165 (470)
++++.+.|.....-..++.=...|-..++.+ ++..++|..|.+.|+-.... .|......+-..|++.+|.++|
T Consensus 49 Lerc~~~f~~~~~YknD~RyLkiWi~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy 122 (125)
T smart00777 49 LERCIRYFEDDERYKNDPRYLKIWLKYADNC------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVY 122 (125)
T ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Q ss_pred H
Q 036577 166 G 166 (470)
Q Consensus 166 ~ 166 (470)
+
T Consensus 123 ~ 123 (125)
T smart00777 123 Q 123 (125)
T ss_pred H
No 453
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.73 E-value=4.4e+02 Score=27.74 Aligned_cols=132 Identities=13% Similarity=0.024 Sum_probs=77.2
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 036577 81 DITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSP 160 (470)
Q Consensus 81 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 160 (470)
.+..|+++.|++.-..+ .+...|..|......+|+.+-|.-.|++.+. |..|--.|.-.|+.++
T Consensus 653 aLe~gnle~ale~akkl-------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eK 716 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKL-------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEK 716 (1202)
T ss_pred ehhcCCHHHHHHHHHhc-------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHH
Confidence 34567777777766555 3677888888888888888888877776553 3333344555666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036577 161 GFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240 (470)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 240 (470)
-.++......++ |... ......| .|++++-.++++.. |..| ..|.. ....|.-++|.++.++...
T Consensus 717 L~Km~~iae~r~---D~~~-~~qnalY--l~dv~ervkIl~n~---g~~~--laylt----a~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 717 LSKMMKIAEIRN---DATG-QFQNALY--LGDVKERVKILENG---GQLP--LAYLT----AAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHHHHhhh---hhHH-HHHHHHH--hccHHHHHHHHHhc---Cccc--HHHHH----HhhcCcHHHHHHHHHhhcc
Confidence 555554443321 2211 1111222 57777766666543 2111 12211 2246778889999888876
Q ss_pred cCC
Q 036577 241 GNG 243 (470)
Q Consensus 241 ~~~ 243 (470)
...
T Consensus 782 ~~~ 784 (1202)
T KOG0292|consen 782 QVP 784 (1202)
T ss_pred ccC
Confidence 443
No 454
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=41.43 E-value=2.3e+02 Score=24.24 Aligned_cols=99 Identities=14% Similarity=0.223 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC---CHhHH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHh
Q 036577 285 NPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQP---NVVTF--NVIMDELCKNGKMDEASRLLDLMIQIGVRPNAF 359 (470)
Q Consensus 285 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 359 (470)
.+...-++.|+--|.-...+.+|.+.|.. +.|+.+ |..++ ..-|......|+.++|++....+...-+.-|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 44555566666666666666666666644 333333 33333 234556677888888888777765433333332
Q ss_pred HHHHHHH----HHHcCCCHHHHHHHHHHHH
Q 036577 360 VYNTLMD----GFCLTGRVNRAKELFVSME 385 (470)
Q Consensus 360 ~~~~l~~----~~~~~g~~~~A~~~~~~~~ 385 (470)
.+-.|.. =..+.|..++|.++.+.=.
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 2222211 1245666666666665433
No 455
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.72 E-value=2.9e+02 Score=28.99 Aligned_cols=159 Identities=14% Similarity=0.132 Sum_probs=99.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcC
Q 036577 258 TIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNG 337 (470)
Q Consensus 258 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 337 (470)
++|..+.+.|-.+-|+...++-..+ ...+..+|+.+.|++.-.++ .+..+|..|.....+.|
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~~tR------------F~LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~qg 686 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDERTR------------FELALECGNLEVALEAAKKL------DDKDVWERLGEEALRQG 686 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCcchh------------eeeehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhc
Confidence 4455555666666666554322211 22345678888887665442 36678999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 036577 338 KMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYS 417 (470)
Q Consensus 338 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 417 (470)
+.+-|+..|++... |..|--.|.-.|+.++-.++.+.....+ |..+ ....-...|+.++-.++++
T Consensus 687 n~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r~---D~~~---~~qnalYl~dv~ervkIl~ 751 (1202)
T KOG0292|consen 687 NHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIRN---DATG---QFQNALYLGDVKERVKILE 751 (1202)
T ss_pred chHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhhh---hhHH---HHHHHHHhccHHHHHHHHH
Confidence 99988888887654 3334445667899988888776665432 3222 2222234688888888876
Q ss_pred HHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 036577 418 EMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDG 458 (470)
Q Consensus 418 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 458 (470)
.. |..| ..|. .-..+|.-++|.++.++....+
T Consensus 752 n~---g~~~--layl----ta~~~G~~~~ae~l~ee~~~~~ 783 (1202)
T KOG0292|consen 752 NG---GQLP--LAYL----TAAAHGLEDQAEKLGEELEKQV 783 (1202)
T ss_pred hc---Cccc--HHHH----HHhhcCcHHHHHHHHHhhcccc
Confidence 65 4332 1221 2245788899999988887643
No 456
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=39.43 E-value=1.1e+02 Score=29.29 Aligned_cols=51 Identities=10% Similarity=-0.046 Sum_probs=22.3
Q ss_pred HhcCCcchHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036577 153 CKMGRVSPGFVVLGRILRSCFTPDAV-TFNSLIKGLCAESRIMEAAALFTKLKA 205 (470)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 205 (470)
...+.++.|..++.++++. .|+.. .|..-..++.+.+++..|+.=+....+
T Consensus 15 l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie 66 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIE 66 (476)
T ss_pred cccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhh
Confidence 3444455555555555543 23222 222222444455555555444444443
No 457
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=38.89 E-value=1e+02 Score=20.21 Aligned_cols=47 Identities=17% Similarity=0.224 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 036577 107 VSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK 154 (470)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 154 (470)
...++.++...++..-.++++..+.++...| .-+..+|..-++.+++
T Consensus 8 ~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 8 DPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 3445666666666666666666666666666 3445555555554443
No 458
>PRK14700 recombination factor protein RarA; Provisional
Probab=38.87 E-value=2.9e+02 Score=24.82 Aligned_cols=83 Identities=13% Similarity=0.018 Sum_probs=47.8
Q ss_pred hHHHHHHHHHh---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-----HHHHHHHHHHHHHCCCCCCHhHH
Q 036577 255 TYTTIIDGLCK---EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYAND-----WNEAKCLLIEMMDQGVQPNVVTF 326 (470)
Q Consensus 255 ~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~ 326 (470)
.+..+++++.| -.+.+.|+-++..|.+.|-.|....-..++-++-.-|. ...|...++.....|++-.....
T Consensus 125 ~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~PEa~i~L 204 (300)
T PRK14700 125 EFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEGRLVL 204 (300)
T ss_pred hhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 34445566554 45778888888888888877777777777777666663 23444455555555544333333
Q ss_pred HHHHHHHHHcC
Q 036577 327 NVIMDELCKNG 337 (470)
Q Consensus 327 ~~l~~~~~~~g 337 (470)
...+-.++..-
T Consensus 205 a~aviyLA~aP 215 (300)
T PRK14700 205 AQAAIYLAVAP 215 (300)
T ss_pred HHHHHHHHcCC
Confidence 33333333333
No 459
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=38.44 E-value=1.9e+02 Score=22.65 Aligned_cols=80 Identities=14% Similarity=0.209 Sum_probs=40.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCCHhHHHHHHHHHHcCCC-HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036577 326 FNVIMDELCKNGKMDEASRLLDLMIQIGV-----RPNAFVYNTLMDGFCLTGR-VNRAKELFVSMESNRCMHDVFSYSIL 399 (470)
Q Consensus 326 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l 399 (470)
.+.++.-....++......+++.+..... ..+...|..++.+.+...- ---+..+|.-+.+.+..++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 44555555555555555555555532110 1234455566665544443 23344555555555555566666666
Q ss_pred HHHHHH
Q 036577 400 INGYCK 405 (470)
Q Consensus 400 ~~~~~~ 405 (470)
+.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 655544
No 460
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=38.39 E-value=1.4e+02 Score=20.98 Aligned_cols=12 Identities=25% Similarity=0.277 Sum_probs=4.4
Q ss_pred CHHHHHHHHHHH
Q 036577 338 KMDEASRLLDLM 349 (470)
Q Consensus 338 ~~~~a~~~~~~~ 349 (470)
+.+.|.+++..+
T Consensus 51 ~~~~ar~LL~~L 62 (88)
T cd08819 51 NESGARELLKRI 62 (88)
T ss_pred cHHHHHHHHHHh
Confidence 333333333333
No 461
>PHA02875 ankyrin repeat protein; Provisional
Probab=38.29 E-value=3.5e+02 Score=25.57 Aligned_cols=69 Identities=17% Similarity=0.141 Sum_probs=31.6
Q ss_pred HHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc--hHHHHHHHHHhcCChHHHHHHHH
Q 036577 164 VLGRILRSCFTPDAVT--FNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVI--TYSTLINGLCRTGHTIVALNLFE 236 (470)
Q Consensus 164 ~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~ 236 (470)
+++.+++.|..++... ..+.+...+..|+.+- .+.+.+.|..|+.. .....+...+..|+.+.+..+++
T Consensus 17 iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 17 IARRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH
Confidence 3444445565554322 2334444555666543 33344455444322 11233444456666655544443
No 462
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=37.73 E-value=1.1e+02 Score=22.62 Aligned_cols=48 Identities=4% Similarity=-0.009 Sum_probs=31.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhH
Q 036577 364 LMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEG 411 (470)
Q Consensus 364 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 411 (470)
++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-..+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 455555556666778888888777655566666666666777765543
No 463
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=37.34 E-value=1.2e+02 Score=19.70 Aligned_cols=47 Identities=19% Similarity=0.207 Sum_probs=21.5
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH-----HcCCCHHHHHHH
Q 036577 334 CKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGF-----CLTGRVNRAKEL 380 (470)
Q Consensus 334 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~~ 380 (470)
...|++-+|-++++.+=.....+....+-.+|... .+.|+...|..+
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 34556666666666654432223334444444432 244555555443
No 464
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=37.20 E-value=4.9e+02 Score=26.88 Aligned_cols=86 Identities=15% Similarity=0.077 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHH-HcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-C------------CCHHHHHHHHHHHH
Q 036577 339 MDEASRLLDLMI-QIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRC-M------------HDVFSYSILINGYC 404 (470)
Q Consensus 339 ~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~------------~~~~~~~~l~~~~~ 404 (470)
.++....+.... +.|+..+......++... .|++..+..+++++...+. . .+......++.++.
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~ 257 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII 257 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH
Confidence 355555555544 457777777777777654 6999999999988765321 1 12222334444443
Q ss_pred HcCChhHHHHHHHHHHHCCCCCC
Q 036577 405 KNKEIEGALSLYSEMLSKGIKPD 427 (470)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~~~~p~ 427 (470)
.++...++.+++++.+.|..+.
T Consensus 258 -~~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 258 -NQDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred -cCCHHHHHHHHHHHHHhCCCHH
Confidence 4778888888888887766543
No 465
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=37.16 E-value=2.7e+02 Score=24.00 Aligned_cols=58 Identities=10% Similarity=-0.026 Sum_probs=32.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHH
Q 036577 258 TIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCY-ANDWNEAKCLLIEMM 315 (470)
Q Consensus 258 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~ 315 (470)
.++..+.+.|+++++.+.++++...+...+..-.+.+-.+|-. .|....+.+++..+.
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 3556666677777777777777776655666666666555522 234444444444443
No 466
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=36.90 E-value=2.7e+02 Score=23.81 Aligned_cols=20 Identities=10% Similarity=0.222 Sum_probs=10.4
Q ss_pred HHHHHhcCCcchHHHHHHHH
Q 036577 149 INCFCKMGRVSPGFVVLGRI 168 (470)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~~ 168 (470)
|......|+.+.|.+....+
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHHHHhccHHHHHHHHHHh
Confidence 34445555555555555544
No 467
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=36.75 E-value=1.5e+02 Score=20.78 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 036577 128 SLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 168 (470)
Q Consensus 128 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 168 (470)
++|+-....|+.-|...|..++..+.-.=..+...+++..|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 55555555555555555555554443333333333444433
No 468
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=36.49 E-value=5.6e+02 Score=27.68 Aligned_cols=195 Identities=13% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHH----
Q 036577 258 TIIDGLCKEGFVDKAKELFLKMKDE---NINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIM---- 330 (470)
Q Consensus 258 ~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---- 330 (470)
..++-+...+++.+|..+.++-+-. =+.-+...|-.=+..+.+.=+--+-+.+|-.-++.+ ......|....
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~E-Dvt~tmY~~~~~~~~ 777 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNE-DVTKTMYKDTYPPSS 777 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccc-ccccccccccccccc
Q ss_pred --------HHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCC--CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036577 331 --------DELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTG--RVNRAKELFVSMESNRCMHDVFSYSILI 400 (470)
Q Consensus 331 --------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 400 (470)
......++....-+.+....+. ..-....+..++.+|++.+ ++++|+....++.+.+...-.....-++
T Consensus 778 ~~~~~~~~~~~~~~~KVn~ICdair~~l~~-~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~~ae~alkyl~ 856 (928)
T PF04762_consen 778 EAQPNSNSSTASSESKVNKICDAIRKALEK-PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREEDPESAEEALKYLC 856 (928)
T ss_pred ccccccccCCCccccHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcChHHHHHHHhHhe
Q ss_pred HHHHHcCChhHHHHHHH----HHHHCCCCCCHhHHHHHHHHHH-------------hcCCHHHHHHHHHHH
Q 036577 401 NGYCKNKEIEGALSLYS----EMLSKGIKPDVVIYNTLFIGLF-------------EIHQVERAFKLFDEM 454 (470)
Q Consensus 401 ~~~~~~g~~~~A~~~~~----~~~~~~~~p~~~~~~~l~~~~~-------------~~g~~~~A~~~~~~m 454 (470)
-.---..-++.|+.+|+ .|+...-+-|+.-|--.+..+. ..|++++|++.+.++
T Consensus 857 fLvDvn~Ly~~ALG~YDl~Lal~VAq~SQkDPKEYLPfL~~L~~l~~~~rry~ID~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 857 FLVDVNKLYDVALGTYDLELALMVAQQSQKDPKEYLPFLQELQKLPPLYRRYKIDDHLKRYEKALRHLSAC 927 (928)
T ss_pred eeccHHHHHHHHhhhcCHHHHHHHHHHhccChHHHHHHHHHHHhCChhheeeeHhhhhCCHHHHHHHHHhh
No 469
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=36.47 E-value=2.9e+02 Score=25.42 Aligned_cols=65 Identities=17% Similarity=0.150 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 036577 373 RVNRAKELFVSMESNRCMHDV----FSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLF 439 (470)
Q Consensus 373 ~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 439 (470)
-.++...++..++.. .|+. .-|-+++......|.+++.+.+|++++..|-.|-...-..+++.+-
T Consensus 118 p~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 118 PKEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred CHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 356788888888775 4543 4577888888889999999999999999999988888777777765
No 470
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=36.39 E-value=79 Score=21.35 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=20.0
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 036577 405 KNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLF 439 (470)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 439 (470)
..|+.+.+.+++++..+.|..|.......+.-+..
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~ 47 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAME 47 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 35666777777777776666655554444444443
No 471
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=36.00 E-value=3e+02 Score=24.16 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=19.0
Q ss_pred CCCHhhHHHHHHHHHhCCCHHHHHHHH
Q 036577 250 EPNTVTYTTIIDGLCKEGFVDKAKELF 276 (470)
Q Consensus 250 ~~~~~~~~~l~~~~~~~g~~~~a~~~~ 276 (470)
.-++.....+...|.+.|++.+|...|
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 346777888888888888888887766
No 472
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.91 E-value=5.6e+02 Score=27.23 Aligned_cols=190 Identities=15% Similarity=0.117 Sum_probs=102.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCH--HHHHHHHHHHHhCCCCCCHHHH
Q 036577 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFV--DKAKELFLKMKDENINPNVVTY 291 (470)
Q Consensus 214 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~ 291 (470)
-|..|+..|...|+.++|++++.+........ ...-...+...++..-+.+.. +-+++.-+...+.........+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~---d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~If 582 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDT---DSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIF 582 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcccccc---ccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeee
Confidence 47889999999999999999999997744100 011122333355555555544 4455544444443211111111
Q ss_pred HH------------HHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCC--------HHHHHHH-----H
Q 036577 292 NS------------LIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGK--------MDEASRL-----L 346 (470)
Q Consensus 292 ~~------------li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~a~~~-----~ 346 (470)
.. -+-.|......+-+...++.+....-.++....+.++..|+..=+ -+++.+. +
T Consensus 583 t~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl 662 (877)
T KOG2063|consen 583 TSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKL 662 (877)
T ss_pred eccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHH
Confidence 11 223456677788888888888876656677777777777654221 2222222 1
Q ss_pred HHHHHc--CCCC--------CHhHHHHHHHHHHcCCCHHHHHHHHHHHHHC-------------CCCCCHHHHHHHHHHH
Q 036577 347 DLMIQI--GVRP--------NAFVYNTLMDGFCLTGRVNRAKELFVSMESN-------------RCMHDVFSYSILINGY 403 (470)
Q Consensus 347 ~~~~~~--~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------~~~~~~~~~~~l~~~~ 403 (470)
..+.+. ...| ....|....-.+.+.|+.++|..++-..+.. ...++...|-.++..|
T Consensus 663 ~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~ 742 (877)
T KOG2063|consen 663 LDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIY 742 (877)
T ss_pred HHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHH
Confidence 112111 1111 1222332333344778888888777554431 1233666777777776
Q ss_pred HHc
Q 036577 404 CKN 406 (470)
Q Consensus 404 ~~~ 406 (470)
...
T Consensus 743 l~~ 745 (877)
T KOG2063|consen 743 LNP 745 (877)
T ss_pred hcc
Confidence 654
No 473
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=35.80 E-value=2.2e+02 Score=22.40 Aligned_cols=83 Identities=12% Similarity=0.243 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCCCcchHHHHHHHHHhcCC-hHHHHHHHHHHHhcCCCCCcccCCC
Q 036577 179 TFNSLIKGLCAESRIMEAAALFTKLKAFG-----CEPNVITYSTLINGLCRTGH-TIVALNLFEEMANGNGEIGVVCEPN 252 (470)
Q Consensus 179 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g-----~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~ 252 (470)
..|.++.-....+.+.-.+.+++.+.... -..+...|..++.+...... ---+..+|..+.+.+ .+.+
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~------~~~t 114 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKND------IEFT 114 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcC------CCCC
Confidence 35666666666677777766666653221 02356677888888766555 445677777777655 4777
Q ss_pred HhhHHHHHHHHHhCC
Q 036577 253 TVTYTTIIDGLCKEG 267 (470)
Q Consensus 253 ~~~~~~l~~~~~~~g 267 (470)
+.-|..++.++.+..
T Consensus 115 ~~dy~~li~~~l~g~ 129 (145)
T PF13762_consen 115 PSDYSCLIKAALRGY 129 (145)
T ss_pred HHHHHHHHHHHHcCC
Confidence 888888888776653
No 474
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=35.66 E-value=2.6e+02 Score=23.36 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 036577 324 VTFNVIMDELCKNGKMDEASRLLDLMIQIG 353 (470)
Q Consensus 324 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 353 (470)
...+.++..|...|+++.|.+.|.-+++..
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~ 71 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP 71 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC
Confidence 456667777888888888888888887753
No 475
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=35.44 E-value=2.9e+02 Score=23.83 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=34.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCcchHHHHHHHHH
Q 036577 112 ILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK-MGRVSPGFVVLGRIL 169 (470)
Q Consensus 112 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~ 169 (470)
.++..+-+.|+++++...++++...+...+..-.+.+..+|-. .|....+..++..+.
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 4566677788888888888888887666666655555555532 233344444444443
No 476
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=35.05 E-value=3.6e+02 Score=24.78 Aligned_cols=63 Identities=14% Similarity=0.232 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHCCCCCCH----hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 036577 304 WNEAKCLLIEMMDQGVQPNV----VTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGF 368 (470)
Q Consensus 304 ~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 368 (470)
.+++..++.++++. .|+. .-|..++......|.++.++.+|++++..|..|-...-..+++.+
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 34555566655554 4443 235556666666777777777777777777766665555555554
No 477
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=34.70 E-value=57 Score=21.37 Aligned_cols=46 Identities=20% Similarity=0.132 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036577 142 LYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLC 188 (470)
Q Consensus 142 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (470)
...++.++..+++-.-.++++..+++..+.| ..+..+|.--++.++
T Consensus 8 ~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~La 53 (65)
T PF09454_consen 8 DPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLA 53 (65)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3445555555555555555555555555554 234444444444443
No 478
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=34.55 E-value=2e+02 Score=26.16 Aligned_cols=57 Identities=12% Similarity=0.141 Sum_probs=28.4
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCC-CC--CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036577 296 HGFCYANDWNEAKCLLIEMMDQGV-QP--NVVTFNVIMDELCKNGKMDEASRLLDLMIQI 352 (470)
Q Consensus 296 ~~~~~~~~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 352 (470)
+-|.+..++..|...|.+-++... .| +.+.|+.-..+-...|++..|+.=.......
T Consensus 89 N~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~ 148 (390)
T KOG0551|consen 89 NEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL 148 (390)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556666666666655544321 11 2344444444444555555555555544444
No 479
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=34.48 E-value=1e+02 Score=22.98 Aligned_cols=45 Identities=16% Similarity=0.082 Sum_probs=23.8
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 036577 398 ILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIH 442 (470)
Q Consensus 398 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 442 (470)
.++..+...+..-.|.++++.+.+.+...+..|...-+..+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 344455555556666666666666655555554444445554444
No 480
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.25 E-value=4.7e+02 Score=25.55 Aligned_cols=100 Identities=9% Similarity=0.039 Sum_probs=52.7
Q ss_pred HHHHHHHHHH-HCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHH
Q 036577 306 EAKCLLIEMM-DQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSM 384 (470)
Q Consensus 306 ~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 384 (470)
+....+.... ..|+..+......++. ...|+...|+.+++++...+. ...++..+...
T Consensus 184 ~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~~--~~it~~~V~~~----------------- 242 (484)
T PRK14956 184 VLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFTD--SKLTGVKIRKM----------------- 242 (484)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhCC--CCcCHHHHHHH-----------------
Confidence 3344444433 3455555555544443 345777777777776543210 11122222111
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHh
Q 036577 385 ESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVV 429 (470)
Q Consensus 385 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 429 (470)
. | ..+...+..++.+....+....|+.++.++.+.|..|...
T Consensus 243 l--g-~~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 243 I--G-YHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred h--C-CCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 1 2 2255555666665555555668888889888888766544
No 481
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=33.19 E-value=2.9e+02 Score=23.13 Aligned_cols=60 Identities=18% Similarity=0.119 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHH
Q 036577 359 FVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVF-SYSILINGYCKNKEIEGALSLYSEM 419 (470)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (470)
...+.++..|.-.|+++.|.+.|.-++... ..|.. .|..=+..+.+.+.-....+.++.|
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l 102 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHH
Confidence 345666777777777777777777776643 22333 2333334444444333333333333
No 482
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=33.10 E-value=3.7e+02 Score=24.27 Aligned_cols=70 Identities=21% Similarity=0.291 Sum_probs=38.9
Q ss_pred HccCCHHHHHHHHH-HHHHCCCCCCH----hHHHHHHHHHHHcCCHH-HHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCC
Q 036577 299 CYANDWNEAKCLLI-EMMDQGVQPNV----VTFNVIMDELCKNGKMD-EASRLLDLMIQIGVRPNAFVYNTLMDGFCLTG 372 (470)
Q Consensus 299 ~~~~~~~~a~~~~~-~~~~~~~~~~~----~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 372 (470)
.+...+++...... +|.+.+ -|+. ..|..+|++---+.+-+ -|.+.++ ...+|.-|+.+++..|
T Consensus 266 s~e~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsaveWnKkeelva~qalr---------hlK~yaPLL~af~s~g 335 (412)
T KOG2297|consen 266 SEEDPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSAVEWNKKEELVAEQALR---------HLKQYAPLLAAFCSQG 335 (412)
T ss_pred ccCCCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHHHhhchHHHHHHHHHHH---------HHHhhhHHHHHHhcCC
Confidence 33445555555554 455555 4443 35777776543332211 1222222 3356888999999999
Q ss_pred CHHHHH
Q 036577 373 RVNRAK 378 (470)
Q Consensus 373 ~~~~A~ 378 (470)
+.+...
T Consensus 336 ~sEL~L 341 (412)
T KOG2297|consen 336 QSELEL 341 (412)
T ss_pred hHHHHH
Confidence 877654
No 483
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=33.00 E-value=2e+02 Score=21.34 Aligned_cols=36 Identities=17% Similarity=0.137 Sum_probs=24.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 036577 112 ILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148 (470)
Q Consensus 112 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l 148 (470)
++++.+.++...++|+++.+-|.++| .-+...-+.|
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eL 101 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKEL 101 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 45666777788888888888888877 4444433333
No 484
>PRK14700 recombination factor protein RarA; Provisional
Probab=32.83 E-value=3.7e+02 Score=24.20 Aligned_cols=66 Identities=20% Similarity=0.265 Sum_probs=46.7
Q ss_pred HHHHHHHHHH---ccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCC-----HHHHHHHHHHHHHcCCC
Q 036577 290 TYNSLIHGFC---YANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGK-----MDEASRLLDLMIQIGVR 355 (470)
Q Consensus 290 ~~~~li~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~~ 355 (470)
.+-.+++++. +-.|.+.|+-.+..|++.|..|....-..++.++-.-|. ...|...++.....|.+
T Consensus 125 ~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~P 198 (300)
T PRK14700 125 EFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMP 198 (300)
T ss_pred hhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCh
Confidence 3444566654 457899999999999999977777777777777777664 33556666666666765
No 485
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=32.78 E-value=1.2e+02 Score=27.23 Aligned_cols=53 Identities=8% Similarity=0.014 Sum_probs=37.5
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036577 82 ITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNST 136 (470)
Q Consensus 82 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 136 (470)
.+.|+.++|..+|+.++...|. ++.....+....-..++.-+|-++|-+.+..
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~--~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPT--NPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCC--CHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 4567888888888888888876 6666666655555566677777777665543
No 486
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=32.51 E-value=3.8e+02 Score=24.21 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHH
Q 036577 393 VFSYSILINGYCKNKEIEGALS 414 (470)
Q Consensus 393 ~~~~~~l~~~~~~~g~~~~A~~ 414 (470)
..+|.-|+.+++..|+.+-.+-
T Consensus 321 lK~yaPLL~af~s~g~sEL~Ll 342 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELELL 342 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHHH
Confidence 4457777777877777665543
No 487
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=32.48 E-value=2.5e+02 Score=22.04 Aligned_cols=25 Identities=0% Similarity=-0.055 Sum_probs=11.2
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhCC
Q 036577 148 LINCFCKMGRVSPGFVVLGRILRSC 172 (470)
Q Consensus 148 li~~~~~~g~~~~a~~~~~~~~~~~ 172 (470)
++..+.+.++.-.|.++++.+.+.+
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~ 50 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEG 50 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhC
Confidence 3334444444444555555544443
No 488
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=32.43 E-value=97 Score=17.37 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHH
Q 036577 110 FNILFGCLAKNKHYDTVLSLFK 131 (470)
Q Consensus 110 ~~~l~~~~~~~~~~~~A~~~~~ 131 (470)
|-.+...+-..|++++|.++|+
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 4455666667778888877743
No 489
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=32.15 E-value=4.4e+02 Score=24.95 Aligned_cols=59 Identities=8% Similarity=0.098 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 036577 256 YTTIIDGLCKEGFVDKAKELFLKMKDE--NINPNVVTYNSLIHGFCYANDWNEAKCLLIEM 314 (470)
Q Consensus 256 ~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 314 (470)
.-.|++...-.|++....+.++.+... |..|...+--.+.-+|.-.+++.+|.+.|-..
T Consensus 238 L~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~ni 298 (525)
T KOG3677|consen 238 LLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNI 298 (525)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHH
Confidence 344555555666665555555555442 22232222123344555556666666666554
No 490
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=32.06 E-value=6.2e+02 Score=26.57 Aligned_cols=99 Identities=12% Similarity=0.027 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-------------CCCCHHHHHHHHHHH
Q 036577 338 KMDEASRLLDLMIQI-GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNR-------------CMHDVFSYSILINGY 403 (470)
Q Consensus 338 ~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~~~~~l~~~~ 403 (470)
..++..+.++.+.+. |+..+......+.... .|++..|+.++++....+ ...+...+..++..+
T Consensus 179 s~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A--~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL 256 (830)
T PRK07003 179 PAGHIVSHLERILGEERIAFEPQALRLLARAA--QGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDAL 256 (830)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHH
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 036577 404 CKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFE 440 (470)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 440 (470)
.. |+..+++.+++++...|+. -......|+..+.+
T Consensus 257 ~~-~d~~~~l~~~~~l~~~g~~-~~~~l~dLl~~l~~ 291 (830)
T PRK07003 257 AA-GDGPEILAVADEMALRSLS-FSTALQDLASLLHR 291 (830)
T ss_pred Hc-CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHH
No 491
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.99 E-value=5.6e+02 Score=26.05 Aligned_cols=94 Identities=16% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-------------CCHhHHHHH
Q 036577 368 FCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIK-------------PDVVIYNTL 434 (470)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------------p~~~~~~~l 434 (470)
+.....-+-...+-+.+.+.|+..+......++. ...|++..++.+++++...+-. ++......+
T Consensus 180 f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~L 257 (618)
T PRK14951 180 LRPMAPETVLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRL 257 (618)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHH
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 036577 435 FIGLFEIHQVERAFKLFDEMRRDGVAADTW 464 (470)
Q Consensus 435 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 464 (470)
+.++.. |+...++++++++.+.|..|...
T Consensus 258 ldaL~~-~d~~~al~~l~~l~~~G~~~~~i 286 (618)
T PRK14951 258 IDALAQ-GDGRTVVETADELRLNGLSAAST 286 (618)
T ss_pred HHHHHc-CCHHHHHHHHHHHHHcCCCHHHH
No 492
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=31.86 E-value=4.5e+02 Score=24.93 Aligned_cols=137 Identities=13% Similarity=0.070 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH---------------HH
Q 036577 141 DLYTYNILINCFCKMGRVSPGFVVLGRILRS-CFTPDAVTFNSLIKGLCAESRIMEAAALFTK---------------LK 204 (470)
Q Consensus 141 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~---------------~~ 204 (470)
|.+.|-.---+-.+..--.+..+-.+.+.+. .-..+...-..++..+....++.+.++..+. +.
T Consensus 38 DEFvYQfqsfc~yr~~~~~~~~~e~~~l~~~~~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~ 117 (404)
T PF10255_consen 38 DEFVYQFQSFCQYRSKLKKKTEEEIQLLKENNPDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLY 117 (404)
T ss_pred HHHHHHhhhHHHHhhhccCCCHHHHHHHHhhccCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHH
Q ss_pred hcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCC-CHhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 036577 205 AFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEP-NTVTYTTIIDGLCKEGFVDKAKELFLKMK 280 (470)
Q Consensus 205 ~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 280 (470)
.. ..-.+...+++..+-.||+..|+++++.+.-.....--.+++ ...++..+.-+|...+++.+|.+.|..+.
T Consensus 118 ~~---LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 118 KM---LGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HH---hhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=31.72 E-value=3.8e+02 Score=24.01 Aligned_cols=111 Identities=15% Similarity=0.165 Sum_probs=57.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCC
Q 036577 259 IIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGK 338 (470)
Q Consensus 259 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 338 (470)
++....+.++..+..+.+..+.. ...-...++.....|++..|++++.+..+.- -....|..+=.. ..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l--~~l~~~~c~~~L---~~~ 172 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQLL--EELKGYSCVRHL---SSQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--HhcccchHHHHH---hHH
Confidence 34444445555555555554432 2334455666778888888888887765431 011111111111 112
Q ss_pred HHHHHHHHHHHHHc-----CCCCCHhHHHHHHHHHHcCCCHHHHHHH
Q 036577 339 MDEASRLLDLMIQI-----GVRPNAFVYNTLMDGFCLTGRVNRAKEL 380 (470)
Q Consensus 339 ~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 380 (470)
+++-....+.+.+. -...|+..|..+..+|.-.|+...+.+-
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dk 219 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDK 219 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHH
Confidence 22222222222221 1145788899999999888887666543
No 494
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=31.50 E-value=1.9e+02 Score=20.33 Aligned_cols=42 Identities=7% Similarity=-0.030 Sum_probs=23.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036577 163 VVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLK 204 (470)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 204 (470)
++|+-....|+..|..+|..++..+.-+=-.+...++++.|-
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 555555555666666666666555555555555555555554
No 495
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.94 E-value=5.3e+02 Score=25.46 Aligned_cols=85 Identities=11% Similarity=0.055 Sum_probs=50.8
Q ss_pred HHHHHHHHH-HHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-C------------CCHHHHHHHHHHHHH
Q 036577 340 DEASRLLDL-MIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRC-M------------HDVFSYSILINGYCK 405 (470)
Q Consensus 340 ~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~------------~~~~~~~~l~~~~~~ 405 (470)
++....+.. +.+.|+..+......++... .|+...|..+++++...+. . ++......++.++ .
T Consensus 181 ~~i~~~l~~il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al-~ 257 (509)
T PRK14958 181 LQIAAHCQHLLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEAL-A 257 (509)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHH-H
Confidence 344444444 44557777777766665553 6999999999987765431 1 1222223333333 3
Q ss_pred cCChhHHHHHHHHHHHCCCCCC
Q 036577 406 NKEIEGALSLYSEMLSKGIKPD 427 (470)
Q Consensus 406 ~g~~~~A~~~~~~~~~~~~~p~ 427 (470)
.|+.+.++.+++++.+.|..|.
T Consensus 258 ~~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 258 AKAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred cCCHHHHHHHHHHHHHcCCCHH
Confidence 4777777777777777776654
No 496
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=30.88 E-value=1.5e+02 Score=21.83 Aligned_cols=47 Identities=19% Similarity=0.193 Sum_probs=28.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 036577 113 LFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159 (470)
Q Consensus 113 l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 159 (470)
++..+...+..-.|.++++.+.+.+...+..|....+..+.+.|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 44455555555667777777776665556666656666666666433
No 497
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=30.78 E-value=4.8e+02 Score=24.87 Aligned_cols=201 Identities=16% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCcchHHHHHHHHHhcCChH-----HHHH
Q 036577 162 FVVLGRILRSCFTPD-AVTFNSLIKGLCAESRIMEAAALFTKLKAFGC--EPNVITYSTLINGLCRTGHTI-----VALN 233 (470)
Q Consensus 162 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~g~~~-----~a~~ 233 (470)
...+...+.-..+|| ...|+.+.+.=.++.--++..++.+.|....- .|-..-...++..||+.++.+ .-+.
T Consensus 39 ~~~W~~~L~V~~K~d~l~~wd~iydLp~Q~~lr~DC~~~~d~l~n~ee~~v~vv~dlES~iTfYCK~Rn~~Y~~d~gWi~ 118 (669)
T KOG3636|consen 39 KSDWMRLLGVSMKPNPLDDWDQIYDLPNQCALRNDCRKLADGLKNKEEDKVPVVSDLESFITFYCKKRNMDYIKDIGWIT 118 (669)
T ss_pred HHHHHHHhcccCCCCchhhHHHHhCCchhhHHHHHHHHHHhhcCCchhhccchhHhhhhHhhhhhhccCCcccccccHHH
Q ss_pred HHHHHHhcCCCCCcccCCCHhhHHHHHHHHHh-----CCCHHHHHHHHHHHHh------------CCCCCCHHHHHHHHH
Q 036577 234 LFEEMANGNGEIGVVCEPNTVTYTTIIDGLCK-----EGFVDKAKELFLKMKD------------ENINPNVVTYNSLIH 296 (470)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~------------~~~~~~~~~~~~li~ 296 (470)
+++.+.... -|....||..-..-.+ +..-.....+|+.+.. +.+.||..+.+.+..
T Consensus 119 lL~pl~~L~-------lprsd~fN~F~ai~~kYIPkdcrpkg~~Fh~FRLLlqYHdPelc~~LdtkkitPd~Y~lnWf~s 191 (669)
T KOG3636|consen 119 LLEPLLLLN-------LPRSDEFNVFFAITTKYIPKDCRPKGQIFHLFRLLLQYHDPELCNHLDTKKITPDMYTLNWFAS 191 (669)
T ss_pred HHHHHHHhc-------CCcchhhhhhHhhhhcccCCCCCCCCccchHHHHHHHhcCHHHhhhhhccccCchHHHHHHHHH
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH-------cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 036577 297 GFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCK-------NGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFC 369 (470)
Q Consensus 297 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 369 (470)
.++..-..+-..++|+-..+++-+.-+.....++-.-++ ...-++++++++.|-..=---|..-+..|...|+
T Consensus 192 LFas~~Stev~~a~WdlY~qqaDPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 192 LFASSMSTEVCHALWDLYIQQADPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhcccccchhHHHHHHHHh
No 498
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=30.53 E-value=3.2e+02 Score=22.74 Aligned_cols=19 Identities=21% Similarity=0.086 Sum_probs=14.8
Q ss_pred HhcCChHHHHHHHHHHHhc
Q 036577 223 CRTGHTIVALNLFEEMANG 241 (470)
Q Consensus 223 ~~~g~~~~a~~~~~~~~~~ 241 (470)
.+.|+++.|.+.++-|...
T Consensus 132 l~~~~~~~Ae~~~~~ME~l 150 (204)
T COG2178 132 LRKGSFEEAERFLKFMEKL 150 (204)
T ss_pred HHhccHHHHHHHHHHHHHH
Confidence 3578888998888888754
No 499
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=30.42 E-value=3.8e+02 Score=23.57 Aligned_cols=160 Identities=14% Similarity=0.088 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc-----chHHHHHHHHHhCCCCCCHHHHHHH
Q 036577 109 SFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV-----SPGFVVLGRILRSCFTPDAVTFNSL 183 (470)
Q Consensus 109 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-----~~a~~~~~~~~~~~~~~~~~~~~~l 183 (470)
..+.+++.+.+.+....|+.+.+.+... +-=..+...++......... ......+....+.- ... ..|-.+
T Consensus 84 ~L~~iL~~lL~~~~~~~a~~i~~~y~~l--~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~ll-~~f-~~~l~I 159 (258)
T PF07064_consen 84 FLHHILRHLLRRNLDEEALEIASKYRSL--PYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVISLL-QEF-PEYLEI 159 (258)
T ss_pred chHHHHHHHHhcCCcHHHHHHHHHhccC--CCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHH-HcC-cchHHH
Confidence 4567788888888888888888877653 33344555555543333221 11222222222210 001 123333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHH
Q 036577 184 IKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGL 263 (470)
Q Consensus 184 ~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 263 (470)
+-.|.|.-+...-..+|+.+ | .| ..++.-|.+.|+.+.|-.++--+....+........+...-..++...
T Consensus 160 vv~C~RKtE~~~W~~LF~~l---g-~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a 230 (258)
T PF07064_consen 160 VVNCARKTEVRYWPYLFDYL---G-SP-----RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMA 230 (258)
T ss_pred HHHHHHhhHHHHHHHHHHhc---C-CH-----HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHH
Confidence 33344433333333333322 1 11 245556666777766666655554332100000000223333444555
Q ss_pred HhCCCHHHHHHHHHHHHh
Q 036577 264 CKEGFVDKAKELFLKMKD 281 (470)
Q Consensus 264 ~~~g~~~~a~~~~~~~~~ 281 (470)
...++++-+.++.+-+..
T Consensus 231 ~~~~~w~Lc~eL~RFL~~ 248 (258)
T PF07064_consen 231 LESGDWDLCFELVRFLKA 248 (258)
T ss_pred HhcccHHHHHHHHHHHHH
Confidence 555666666655555544
No 500
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=30.34 E-value=3.2e+02 Score=22.72 Aligned_cols=107 Identities=12% Similarity=0.121 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHH-HHHhcC--CcchHH
Q 036577 88 NEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNST--GLFPDLYTYNILIN-CFCKMG--RVSPGF 162 (470)
Q Consensus 88 ~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--~~~~~~~~~~~li~-~~~~~g--~~~~a~ 162 (470)
++++++-+.+.. +...+-.....|++++|..-++++.+. .++.-...|..+.. +++..+ .+-+|.
T Consensus 20 EE~l~lsRei~r----------~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~ 89 (204)
T COG2178 20 EEALKLSREIVR----------LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEAT 89 (204)
T ss_pred HHHHHHHHHHHH----------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHH
Confidence 566666666543 344445556778888888877776443 01111223333333 344433 244555
Q ss_pred HHHHHHHhCCCCCCH-------HHH-HHHHHH----------HHhcCCHHHHHHHHHHHHh
Q 036577 163 VVLGRILRSCFTPDA-------VTF-NSLIKG----------LCAESRIMEAAALFTKLKA 205 (470)
Q Consensus 163 ~~~~~~~~~~~~~~~-------~~~-~~l~~~----------~~~~g~~~~a~~~~~~~~~ 205 (470)
-++..+...+ .|+. ..| +.+.++ ..+.|+++.|.+.++-|.+
T Consensus 90 ~l~~~l~~~~-~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 90 LLYSILKDGR-LPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHhcCC-CCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5555554432 2221 112 112221 2367888888888877764
Done!