Query 036577
Match_columns 470
No_of_seqs 706 out of 2741
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 04:56:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036577.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036577hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.9E-34 6.5E-39 285.9 38.7 369 79-456 92-578 (597)
2 2xpi_A Anaphase-promoting comp 100.0 5.1E-34 1.8E-38 282.8 39.6 347 78-438 124-594 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.9E-30 6.6E-35 243.0 43.3 364 81-463 9-372 (388)
4 4g26_A Pentatricopeptide repea 100.0 1.1E-31 3.8E-36 255.7 23.4 212 226-442 3-224 (501)
5 4g26_A Pentatricopeptide repea 100.0 2.7E-31 9.3E-36 253.1 24.4 201 270-470 7-217 (501)
6 1w3b_A UDP-N-acetylglucosamine 100.0 1.6E-27 5.4E-32 223.2 45.8 345 81-443 43-388 (388)
7 2y4t_A DNAJ homolog subfamily 100.0 3E-25 1E-29 211.9 38.4 353 89-462 10-413 (450)
8 2gw1_A Mitochondrial precursor 100.0 1E-25 3.4E-30 218.9 33.6 374 72-463 7-482 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 1.3E-24 4.5E-29 207.4 37.0 351 78-447 33-444 (450)
10 3fp2_A TPR repeat-containing p 99.9 8.4E-24 2.9E-28 206.6 35.8 370 70-457 24-491 (537)
11 2gw1_A Mitochondrial precursor 99.9 4.2E-23 1.4E-27 200.4 33.1 343 106-457 5-444 (514)
12 3ieg_A DNAJ homolog subfamily 99.9 2.5E-21 8.4E-26 178.6 39.9 318 107-439 3-351 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 2.8E-21 9.4E-26 178.3 36.0 312 78-405 10-352 (359)
14 3fp2_A TPR repeat-containing p 99.9 1E-20 3.4E-25 184.8 35.0 335 106-457 24-457 (537)
15 2xm6_A Protein corresponding t 99.9 3.3E-18 1.1E-22 164.8 48.1 341 83-460 55-435 (490)
16 3hym_B Cell division cycle pro 99.9 1.9E-20 6.7E-25 170.6 30.6 284 106-438 21-314 (330)
17 3hym_B Cell division cycle pro 99.9 4.3E-20 1.5E-24 168.3 31.4 277 78-368 29-314 (330)
18 1fch_A Peroxisomal targeting s 99.9 1.6E-20 5.3E-25 174.1 26.0 309 80-419 34-356 (368)
19 1fch_A Peroxisomal targeting s 99.9 6.2E-20 2.1E-24 170.1 25.6 327 85-455 15-357 (368)
20 2xm6_A Protein corresponding t 99.9 1.2E-16 4.1E-21 153.8 47.1 333 89-458 25-397 (490)
21 4eqf_A PEX5-related protein; a 99.9 5.4E-20 1.8E-24 170.4 21.5 266 177-453 65-352 (365)
22 4eqf_A PEX5-related protein; a 99.9 6.8E-20 2.3E-24 169.7 21.6 236 106-352 64-310 (365)
23 2ooe_A Cleavage stimulation fa 99.8 6.9E-17 2.4E-21 157.2 43.3 355 84-456 25-491 (530)
24 3cv0_A Peroxisome targeting si 99.8 1.8E-18 6.2E-23 157.3 26.3 263 181-455 25-313 (327)
25 4g1t_A Interferon-induced prot 99.8 1.9E-17 6.5E-22 158.8 34.7 351 105-466 49-469 (472)
26 3cv0_A Peroxisome targeting si 99.8 2.2E-18 7.5E-23 156.7 26.5 234 106-351 20-268 (327)
27 1b89_A Protein (clathrin heavy 99.8 1.9E-19 6.5E-24 163.9 15.1 282 83-415 15-304 (449)
28 3mkr_A Coatomer subunit epsilo 99.8 8.9E-18 3E-22 149.5 25.3 249 84-352 12-264 (291)
29 2ooe_A Cleavage stimulation fa 99.8 2.3E-16 7.8E-21 153.5 37.4 349 94-458 2-455 (530)
30 3mkr_A Coatomer subunit epsilo 99.8 1.3E-17 4.5E-22 148.5 25.9 274 150-449 7-286 (291)
31 4g1t_A Interferon-induced prot 99.8 1.1E-16 3.8E-21 153.5 28.4 344 77-431 57-469 (472)
32 1b89_A Protein (clathrin heavy 99.8 1.5E-18 5.1E-23 158.0 13.5 282 119-450 15-304 (449)
33 3spa_A Mtrpol, DNA-directed RN 99.8 1.3E-18 4.5E-23 170.8 13.6 138 320-462 124-265 (1134)
34 3uq3_A Heat shock protein STI1 99.7 6.4E-16 2.2E-20 135.2 25.3 232 177-422 5-236 (258)
35 3spa_A Mtrpol, DNA-directed RN 99.7 2.6E-18 8.8E-23 168.8 10.3 137 286-427 125-265 (1134)
36 3uq3_A Heat shock protein STI1 99.7 7.7E-16 2.6E-20 134.7 24.4 226 107-352 5-236 (258)
37 2pl2_A Hypothetical conserved 99.7 7.1E-16 2.4E-20 131.2 22.2 201 250-456 2-213 (217)
38 2pl2_A Hypothetical conserved 99.7 1E-15 3.5E-20 130.2 21.8 198 210-419 3-211 (217)
39 3u4t_A TPR repeat-containing p 99.7 3.2E-15 1.1E-19 132.0 25.5 238 214-463 5-254 (272)
40 1xnf_A Lipoprotein NLPI; TPR, 99.7 8.2E-16 2.8E-20 136.0 20.7 252 79-346 13-269 (275)
41 1xi4_A Clathrin heavy chain; a 99.7 3E-14 1E-18 144.7 33.9 313 78-449 1056-1376(1630)
42 3e4b_A ALGK; tetratricopeptide 99.7 2E-15 7E-20 143.2 23.7 345 77-455 41-419 (452)
43 1ouv_A Conserved hypothetical 99.7 5.8E-14 2E-18 124.0 31.5 223 176-422 5-251 (273)
44 2h6f_A Protein farnesyltransfe 99.7 4E-15 1.4E-19 136.9 24.3 244 75-333 101-363 (382)
45 3u4t_A TPR repeat-containing p 99.7 6.9E-15 2.4E-19 129.8 24.9 127 215-350 77-206 (272)
46 1xi4_A Clathrin heavy chain; a 99.7 2.7E-13 9.1E-18 137.9 37.5 307 83-442 1088-1415(1630)
47 1ouv_A Conserved hypothetical 99.7 1.6E-13 5.6E-18 121.1 32.2 222 212-457 6-251 (273)
48 2h6f_A Protein farnesyltransfe 99.7 1.4E-14 4.7E-19 133.3 26.0 252 142-438 97-363 (382)
49 2ho1_A Type 4 fimbrial biogene 99.7 3.6E-14 1.2E-18 123.7 26.5 201 107-317 37-238 (252)
50 2ho1_A Type 4 fimbrial biogene 99.7 2.2E-14 7.4E-19 125.1 25.0 208 253-466 37-245 (252)
51 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.8E-15 6.1E-20 133.8 18.0 246 190-451 18-269 (275)
52 2vq2_A PILW, putative fimbrial 99.7 3.4E-14 1.2E-18 121.3 24.9 212 250-466 5-218 (225)
53 2q7f_A YRRB protein; TPR, prot 99.7 9.6E-15 3.3E-19 126.5 21.5 201 211-422 22-222 (243)
54 2vq2_A PILW, putative fimbrial 99.7 3.6E-14 1.2E-18 121.1 24.8 203 106-317 7-211 (225)
55 2q7f_A YRRB protein; TPR, prot 99.7 6.4E-15 2.2E-19 127.6 20.1 198 73-282 25-222 (243)
56 3e4b_A ALGK; tetratricopeptide 99.7 5.4E-14 1.9E-18 133.4 27.5 338 82-459 14-389 (452)
57 3sf4_A G-protein-signaling mod 99.6 1.5E-14 5.2E-19 135.5 20.6 304 105-410 7-364 (406)
58 4a1s_A PINS, partner of inscut 99.6 1.2E-14 4E-19 136.6 19.5 272 182-456 53-371 (411)
59 4a1s_A PINS, partner of inscut 99.6 2.3E-14 8E-19 134.6 21.0 283 107-422 48-372 (411)
60 3sf4_A G-protein-signaling mod 99.6 3.4E-14 1.2E-18 133.1 21.2 100 141-241 8-116 (406)
61 2ond_A Cleavage stimulation fa 99.6 5.2E-13 1.8E-17 120.1 26.7 219 88-317 33-270 (308)
62 3ulq_A Response regulator aspa 99.6 1.4E-13 4.9E-18 127.9 23.5 301 117-420 22-366 (383)
63 3vtx_A MAMA; tetratricopeptide 99.6 2.5E-13 8.6E-18 112.1 22.4 174 287-466 4-177 (184)
64 3ro2_A PINS homolog, G-protein 99.6 5.5E-14 1.9E-18 127.8 20.0 274 180-456 8-331 (338)
65 2ond_A Cleavage stimulation fa 99.6 1.8E-12 6E-17 116.6 29.2 217 229-456 33-269 (308)
66 3ro2_A PINS homolog, G-protein 99.6 6.7E-14 2.3E-18 127.2 20.2 281 108-421 6-331 (338)
67 3ulq_A Response regulator aspa 99.6 3.5E-13 1.2E-17 125.4 21.6 299 152-456 22-367 (383)
68 4abn_A Tetratricopeptide repea 99.6 2.2E-13 7.7E-18 130.0 19.9 214 227-453 83-317 (474)
69 4abn_A Tetratricopeptide repea 99.6 1.9E-13 6.5E-18 130.4 19.3 214 86-313 83-317 (474)
70 4e6h_A MRNA 3'-END-processing 99.6 4.4E-11 1.5E-15 117.4 36.2 396 48-457 51-570 (679)
71 3vtx_A MAMA; tetratricopeptide 99.5 2.1E-12 7.1E-17 106.6 22.6 172 251-428 3-174 (184)
72 3nf1_A KLC 1, kinesin light ch 99.5 8.4E-14 2.9E-18 125.3 14.0 252 176-456 26-306 (311)
73 3nf1_A KLC 1, kinesin light ch 99.5 6.7E-14 2.3E-18 126.0 12.9 176 106-281 26-223 (311)
74 3q15_A PSP28, response regulat 99.5 8.8E-12 3E-16 115.6 26.0 311 106-420 9-363 (378)
75 4e6h_A MRNA 3'-END-processing 99.5 2.4E-10 8.1E-15 112.3 35.5 360 87-458 48-534 (679)
76 3q15_A PSP28, response regulat 99.5 1.3E-11 4.3E-16 114.5 25.2 313 139-456 7-364 (378)
77 1hz4_A MALT regulatory protein 99.5 3.9E-11 1.3E-15 111.0 27.6 55 151-205 23-81 (373)
78 3as5_A MAMA; tetratricopeptide 99.5 4.4E-12 1.5E-16 104.4 18.9 161 292-456 12-172 (186)
79 1hz4_A MALT regulatory protein 99.5 5.8E-11 2E-15 109.8 27.5 273 112-386 19-321 (373)
80 4gyw_A UDP-N-acetylglucosamine 99.4 6.6E-12 2.3E-16 124.7 19.6 166 106-281 8-173 (723)
81 4gyw_A UDP-N-acetylglucosamine 99.4 9.5E-12 3.3E-16 123.6 20.4 168 250-421 6-173 (723)
82 3as5_A MAMA; tetratricopeptide 99.4 2.4E-11 8.2E-16 99.9 19.6 166 107-282 8-173 (186)
83 4i17_A Hypothetical protein; T 99.4 4.6E-11 1.6E-15 102.2 20.1 202 250-464 4-214 (228)
84 4i17_A Hypothetical protein; T 99.4 1.1E-10 3.6E-15 99.9 21.6 154 287-444 6-169 (228)
85 3edt_B KLC 2, kinesin light ch 99.3 1.8E-11 6.2E-16 108.1 14.7 235 222-456 11-280 (283)
86 3edt_B KLC 2, kinesin light ch 99.3 1.7E-11 5.8E-16 108.3 13.7 241 83-352 13-281 (283)
87 3mv2_B Coatomer subunit epsilo 99.3 5.9E-09 2E-13 91.1 27.5 244 115-387 21-282 (310)
88 1qqe_A Vesicular transport pro 99.3 5.3E-10 1.8E-14 99.4 19.8 237 89-350 3-267 (292)
89 2uy1_A Cleavage stimulation fa 99.2 3.3E-08 1.1E-12 94.2 32.4 124 325-456 288-412 (493)
90 3urz_A Uncharacterized protein 99.2 5.4E-10 1.9E-14 93.9 16.6 170 253-429 4-191 (208)
91 1qqe_A Vesicular transport pro 99.2 3.8E-10 1.3E-14 100.4 16.4 238 195-463 3-273 (292)
92 3mv2_B Coatomer subunit epsilo 99.2 4.2E-09 1.4E-13 92.0 22.0 241 152-422 23-282 (310)
93 2fo7_A Synthetic consensus TPR 99.2 1.2E-09 4E-14 84.3 17.0 128 326-456 4-131 (136)
94 2pzi_A Probable serine/threoni 99.2 1.1E-10 3.9E-15 116.3 13.9 174 82-268 402-583 (681)
95 3dra_A Protein farnesyltransfe 99.2 1.6E-08 5.6E-13 89.2 25.1 231 86-328 48-298 (306)
96 3qky_A Outer membrane assembly 99.2 1.7E-09 5.8E-14 94.5 18.6 172 105-282 13-224 (261)
97 3urz_A Uncharacterized protein 99.2 2.4E-10 8.2E-15 96.1 12.6 158 79-242 12-187 (208)
98 2fo7_A Synthetic consensus TPR 99.2 2.6E-09 9.1E-14 82.3 17.5 130 290-422 3-132 (136)
99 3qky_A Outer membrane assembly 99.2 1.9E-09 6.4E-14 94.2 18.2 64 177-241 15-81 (261)
100 3rjv_A Putative SEL1 repeat pr 99.1 8.1E-09 2.8E-13 86.9 20.1 180 270-461 3-201 (212)
101 2vsy_A XCC0866; transferase, g 99.1 1.3E-09 4.6E-14 106.7 17.4 154 84-242 2-158 (568)
102 2pzi_A Probable serine/threoni 99.1 1.1E-09 3.8E-14 109.2 17.0 174 118-303 402-583 (681)
103 4ga2_A E3 SUMO-protein ligase 99.1 3E-10 1E-14 89.9 10.3 146 77-227 3-149 (150)
104 3dra_A Protein farnesyltransfe 99.1 1.2E-07 4E-12 83.7 27.8 217 159-386 50-286 (306)
105 4ga2_A E3 SUMO-protein ligase 99.1 6.8E-10 2.3E-14 87.8 11.5 145 295-443 4-149 (150)
106 2r5s_A Uncharacterized protein 99.1 1E-09 3.6E-14 89.4 12.6 155 81-240 16-172 (176)
107 3rjv_A Putative SEL1 repeat pr 99.1 2.5E-08 8.7E-13 83.9 20.6 60 176-239 17-80 (212)
108 2r5s_A Uncharacterized protein 99.1 3.1E-09 1.1E-13 86.6 14.1 78 342-420 93-171 (176)
109 2yhc_A BAMD, UPF0169 lipoprote 99.1 3E-08 1E-12 84.3 20.3 186 252-457 3-213 (225)
110 2vsy_A XCC0866; transferase, g 99.1 5.5E-09 1.9E-13 102.3 17.9 154 266-423 2-158 (568)
111 3qou_A Protein YBBN; thioredox 99.0 6.2E-09 2.1E-13 92.2 16.4 166 106-280 116-282 (287)
112 3qou_A Protein YBBN; thioredox 99.0 7E-09 2.4E-13 91.8 16.6 160 214-383 119-280 (287)
113 2ifu_A Gamma-SNAP; membrane fu 99.0 5.5E-09 1.9E-13 93.6 15.4 204 84-315 4-222 (307)
114 2uy1_A Cleavage stimulation fa 99.0 6.3E-07 2.2E-11 85.4 29.9 317 85-421 28-412 (493)
115 2yhc_A BAMD, UPF0169 lipoprote 99.0 6.4E-08 2.2E-12 82.3 20.7 195 79-317 12-213 (225)
116 2ifu_A Gamma-SNAP; membrane fu 99.0 1.6E-08 5.3E-13 90.6 15.8 227 189-450 3-254 (307)
117 2e2e_A Formate-dependent nitri 99.0 1.7E-08 5.9E-13 82.2 14.5 126 78-207 17-145 (177)
118 3q7a_A Farnesyltransferase alp 98.9 6.4E-07 2.2E-11 79.9 24.9 172 86-269 69-258 (349)
119 4gco_A Protein STI-1; structur 98.9 4.8E-09 1.6E-13 80.0 9.5 96 73-171 15-110 (126)
120 4f3v_A ESX-1 secretion system 98.9 2.3E-08 7.8E-13 86.2 14.6 187 83-282 18-237 (282)
121 3u3w_A Transcriptional activat 98.9 4E-07 1.4E-11 80.8 22.8 164 293-456 80-265 (293)
122 3q7a_A Farnesyltransferase alp 98.9 1.8E-06 6.1E-11 77.1 25.4 103 156-267 68-173 (349)
123 1hh8_A P67PHOX, NCF-2, neutrop 98.9 2.9E-07 9.8E-12 77.3 19.4 129 254-387 7-150 (213)
124 3u3w_A Transcriptional activat 98.9 5.3E-07 1.8E-11 80.0 21.9 162 218-384 81-263 (293)
125 1a17_A Serine/threonine protei 98.9 1.8E-07 6.1E-12 74.9 16.7 129 324-455 14-144 (166)
126 1hh8_A P67PHOX, NCF-2, neutrop 98.8 2.8E-07 9.6E-12 77.4 18.6 144 290-438 8-166 (213)
127 1a17_A Serine/threonine protei 98.8 3E-07 1E-11 73.6 16.6 128 290-420 15-144 (166)
128 4gco_A Protein STI-1; structur 98.8 2.5E-07 8.4E-12 70.4 15.0 94 326-421 16-109 (126)
129 3gyz_A Chaperone protein IPGC; 98.8 2.3E-08 7.8E-13 78.7 9.4 99 106-206 35-133 (151)
130 2vgx_A Chaperone SYCD; alterna 98.8 3.4E-08 1.2E-12 77.7 10.3 110 93-206 9-118 (148)
131 3gyz_A Chaperone protein IPGC; 98.8 8E-08 2.7E-12 75.5 12.3 98 323-422 36-133 (151)
132 2qfc_A PLCR protein; TPR, HTH, 98.8 2.7E-06 9.3E-11 75.4 23.7 169 214-383 77-262 (293)
133 3gw4_A Uncharacterized protein 98.8 6.7E-08 2.3E-12 80.4 12.5 158 82-241 3-176 (203)
134 4f3v_A ESX-1 secretion system 98.8 4.7E-07 1.6E-11 78.1 17.5 189 119-317 18-237 (282)
135 3gw4_A Uncharacterized protein 98.8 9.5E-08 3.3E-12 79.5 13.0 157 264-421 3-175 (203)
136 2c2l_A CHIP, carboxy terminus 98.8 8.4E-08 2.9E-12 84.5 13.2 194 105-316 2-198 (281)
137 2qfc_A PLCR protein; TPR, HTH, 98.8 9.2E-07 3.2E-11 78.4 20.0 123 332-454 124-263 (293)
138 2vgx_A Chaperone SYCD; alterna 98.8 2.7E-08 9.3E-13 78.3 8.8 111 309-422 8-118 (148)
139 1na0_A Designed protein CTPR3; 98.8 6E-07 2.1E-11 67.7 15.9 97 324-422 10-106 (125)
140 1p5q_A FKBP52, FK506-binding p 98.7 1.4E-08 4.6E-13 92.2 7.4 153 83-240 125-293 (336)
141 2c2l_A CHIP, carboxy terminus 98.7 4.8E-08 1.6E-12 86.1 10.7 96 213-316 5-100 (281)
142 2lni_A Stress-induced-phosphop 98.7 3.5E-07 1.2E-11 70.0 14.3 118 322-442 15-132 (133)
143 2e2e_A Formate-dependent nitri 98.7 1.2E-07 4E-12 77.2 12.0 121 299-422 21-144 (177)
144 1na0_A Designed protein CTPR3; 98.7 8.3E-07 2.8E-11 66.9 16.0 97 254-352 10-106 (125)
145 2lni_A Stress-induced-phosphop 98.7 3.3E-07 1.1E-11 70.2 13.7 119 105-226 14-132 (133)
146 2vyi_A SGTA protein; chaperone 98.7 6.6E-07 2.3E-11 68.1 15.2 94 326-421 15-108 (131)
147 1p5q_A FKBP52, FK506-binding p 98.7 4.2E-07 1.4E-11 82.3 16.1 124 287-412 146-283 (336)
148 2vyi_A SGTA protein; chaperone 98.7 4.9E-07 1.7E-11 68.8 14.3 120 287-409 11-130 (131)
149 3dss_A Geranylgeranyl transfer 98.7 8.8E-06 3E-10 72.3 23.8 167 88-266 47-240 (331)
150 3dss_A Geranylgeranyl transfer 98.7 1.1E-05 3.8E-10 71.6 24.0 224 223-462 40-307 (331)
151 2xcb_A PCRH, regulatory protei 98.7 1.9E-07 6.4E-12 72.8 10.7 110 93-206 6-115 (142)
152 2fbn_A 70 kDa peptidylprolyl i 98.6 9.5E-08 3.3E-12 79.3 8.0 130 325-456 40-185 (198)
153 4gcn_A Protein STI-1; structur 98.6 5E-07 1.7E-11 68.8 11.3 96 325-421 10-111 (127)
154 2xcb_A PCRH, regulatory protei 98.6 4.9E-07 1.7E-11 70.4 11.4 99 322-422 17-115 (142)
155 3upv_A Heat shock protein STI1 98.6 1.9E-06 6.4E-11 65.4 14.4 97 324-422 5-101 (126)
156 3upv_A Heat shock protein STI1 98.6 7.5E-07 2.6E-11 67.6 11.6 97 358-456 4-100 (126)
157 1wao_1 Serine/threonine protei 98.6 2.5E-07 8.5E-12 88.0 10.4 126 72-201 7-134 (477)
158 2fbn_A 70 kDa peptidylprolyl i 98.6 2E-07 6.9E-12 77.3 8.7 95 324-420 89-184 (198)
159 1elw_A TPR1-domain of HOP; HOP 98.5 4.8E-06 1.6E-10 61.9 15.5 96 325-422 6-101 (118)
160 4gcn_A Protein STI-1; structur 98.5 2.2E-06 7.4E-11 65.2 13.3 96 360-456 10-111 (127)
161 2kck_A TPR repeat; tetratricop 98.5 1.2E-06 4.1E-11 64.6 11.4 99 106-206 5-106 (112)
162 1elw_A TPR1-domain of HOP; HOP 98.5 6.1E-06 2.1E-10 61.3 15.5 97 289-387 5-101 (118)
163 3sz7_A HSC70 cochaperone (SGT) 98.5 1.3E-06 4.5E-11 69.8 12.1 100 321-422 9-108 (164)
164 3sz7_A HSC70 cochaperone (SGT) 98.5 3.4E-06 1.1E-10 67.4 14.4 101 286-388 9-109 (164)
165 3q49_B STIP1 homology and U bo 98.5 6.2E-06 2.1E-10 63.4 15.3 100 321-422 7-106 (137)
166 1hxi_A PEX5, peroxisome target 98.5 1.6E-06 5.3E-11 65.4 10.9 92 363-456 22-113 (121)
167 4b4t_Q 26S proteasome regulato 98.5 2.1E-06 7.3E-11 80.7 14.3 198 82-281 15-244 (434)
168 2kck_A TPR repeat; tetratricop 98.5 2.5E-06 8.7E-11 62.7 11.8 96 359-456 7-105 (112)
169 3q49_B STIP1 homology and U bo 98.5 3.8E-06 1.3E-10 64.6 13.2 100 105-206 7-106 (137)
170 1elr_A TPR2A-domain of HOP; HO 98.4 2.5E-06 8.7E-11 64.8 11.5 107 325-434 6-118 (131)
171 4b4t_Q 26S proteasome regulato 98.4 1.9E-05 6.6E-10 74.1 19.2 170 215-385 58-243 (434)
172 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 3.5E-07 1.2E-11 86.6 6.8 151 84-239 247-413 (457)
173 2dba_A Smooth muscle cell asso 98.4 2E-05 6.8E-10 61.3 16.0 100 251-353 26-129 (148)
174 1hxi_A PEX5, peroxisome target 98.4 4.6E-06 1.6E-10 62.7 11.6 95 326-422 20-114 (121)
175 2dba_A Smooth muscle cell asso 98.4 1.7E-05 5.7E-10 61.7 15.4 97 287-386 27-127 (148)
176 1elr_A TPR2A-domain of HOP; HO 98.4 4.9E-06 1.7E-10 63.1 12.0 108 290-400 6-119 (131)
177 3ro3_A PINS homolog, G-protein 98.4 3E-06 1E-10 67.1 10.7 132 325-456 11-157 (164)
178 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 1.5E-05 5.2E-10 75.3 15.3 123 288-413 268-405 (457)
179 3k9i_A BH0479 protein; putativ 98.3 1.6E-06 5.3E-11 64.9 6.8 87 84-171 3-90 (117)
180 3ro3_A PINS homolog, G-protein 98.3 8.5E-06 2.9E-10 64.4 11.5 137 178-315 10-156 (164)
181 1dce_A Protein (RAB geranylger 98.3 1.7E-05 5.9E-10 76.8 15.5 173 87-271 45-244 (567)
182 1wao_1 Serine/threonine protei 98.3 3E-06 1E-10 80.6 9.9 117 298-417 16-134 (477)
183 2xev_A YBGF; tetratricopeptide 98.3 3.2E-05 1.1E-09 58.6 13.9 93 328-422 7-105 (129)
184 3rkv_A Putative peptidylprolyl 98.2 6.5E-06 2.2E-10 65.6 9.9 103 323-428 11-130 (162)
185 1ihg_A Cyclophilin 40; ppiase 98.2 1.6E-05 5.6E-10 72.7 13.7 91 357-449 272-362 (370)
186 2xev_A YBGF; tetratricopeptide 98.2 6.6E-05 2.3E-09 56.8 15.2 92 294-387 8-105 (129)
187 3rkv_A Putative peptidylprolyl 98.2 3.1E-05 1.1E-09 61.5 12.8 101 287-388 10-127 (162)
188 1ihg_A Cyclophilin 40; ppiase 98.2 2.4E-05 8.3E-10 71.5 13.4 91 322-414 272-362 (370)
189 3k9i_A BH0479 protein; putativ 98.2 6E-06 2E-10 61.7 7.6 87 155-242 3-91 (117)
190 1klx_A Cysteine rich protein B 98.1 0.00013 4.5E-09 56.1 15.2 110 338-458 10-127 (138)
191 2hr2_A Hypothetical protein; a 98.1 4E-05 1.4E-09 59.6 11.9 62 395-456 59-130 (159)
192 1dce_A Protein (RAB geranylger 98.1 0.00017 5.7E-09 69.9 18.8 154 303-462 44-224 (567)
193 2if4_A ATFKBP42; FKBP-like, al 98.1 4.1E-06 1.4E-10 75.8 7.1 149 72-242 180-329 (338)
194 3n71_A Histone lysine methyltr 98.1 2.2E-05 7.5E-10 74.2 11.6 124 333-456 319-463 (490)
195 2if4_A ATFKBP42; FKBP-like, al 98.1 1.4E-05 4.9E-10 72.2 9.8 60 325-385 232-291 (338)
196 2hr2_A Hypothetical protein; a 98.1 7.5E-05 2.6E-09 58.0 12.3 95 326-421 14-130 (159)
197 1klx_A Cysteine rich protein B 98.1 0.00019 6.6E-09 55.1 14.7 110 303-423 10-127 (138)
198 3n71_A Histone lysine methyltr 98.0 2.6E-05 8.9E-10 73.7 11.2 126 297-422 318-464 (490)
199 2kat_A Uncharacterized protein 98.0 3.3E-05 1.1E-09 57.3 9.5 80 88-170 2-81 (115)
200 2l6j_A TPR repeat-containing p 97.9 9.6E-06 3.3E-10 59.6 4.6 89 357-448 3-98 (111)
201 1zu2_A Mitochondrial import re 97.9 4.5E-05 1.5E-09 59.2 8.1 84 85-171 16-120 (158)
202 1zu2_A Mitochondrial import re 97.9 2.3E-05 7.8E-10 60.8 6.1 87 334-422 13-120 (158)
203 2l6j_A TPR repeat-containing p 97.8 2.9E-05 1E-09 56.9 6.3 93 323-417 4-102 (111)
204 2kat_A Uncharacterized protein 97.8 7.8E-05 2.7E-09 55.2 8.6 79 341-421 3-81 (115)
205 1na3_A Designed protein CTPR2; 97.8 0.00019 6.6E-09 50.1 9.5 81 107-189 9-89 (91)
206 1na3_A Designed protein CTPR2; 97.8 0.00034 1.2E-08 48.8 10.5 79 359-439 10-88 (91)
207 3ly7_A Transcriptional activat 97.7 0.0006 2E-08 60.8 13.5 70 392-465 276-345 (372)
208 3ma5_A Tetratricopeptide repea 97.6 0.00046 1.6E-08 49.4 9.0 65 357-422 6-70 (100)
209 3ma5_A Tetratricopeptide repea 97.5 0.00039 1.3E-08 49.8 7.9 64 106-170 6-69 (100)
210 3ly7_A Transcriptional activat 97.3 0.0062 2.1E-07 54.4 14.8 135 105-242 192-340 (372)
211 3qww_A SET and MYND domain-con 97.3 0.00097 3.3E-08 61.9 9.5 85 371-455 311-409 (433)
212 1pc2_A Mitochondria fission pr 97.2 0.0017 5.6E-08 49.8 8.4 81 340-422 15-100 (152)
213 3qww_A SET and MYND domain-con 97.2 0.0011 3.9E-08 61.5 8.8 87 335-421 310-410 (433)
214 3qwp_A SET and MYND domain-con 97.2 0.0038 1.3E-07 58.0 12.0 87 369-455 298-398 (429)
215 3qwp_A SET and MYND domain-con 97.1 0.0032 1.1E-07 58.5 10.6 98 219-316 294-399 (429)
216 2kc7_A BFR218_protein; tetratr 96.9 0.0023 7.8E-08 45.4 6.7 57 365-422 7-64 (99)
217 3mkq_A Coatomer beta'-subunit; 96.9 0.027 9.4E-07 57.3 17.1 45 153-203 663-707 (814)
218 3bee_A Putative YFRE protein; 96.9 0.0063 2.2E-07 42.6 8.5 66 356-422 4-72 (93)
219 2kc7_A BFR218_protein; tetratr 96.9 0.0036 1.2E-07 44.4 7.5 54 82-137 11-65 (99)
220 3u64_A Protein TP_0956; tetrat 96.8 0.2 6.7E-06 43.0 18.3 110 339-456 179-297 (301)
221 2v5f_A Prolyl 4-hydroxylase su 96.7 0.011 3.6E-07 42.5 8.8 67 356-422 3-75 (104)
222 3mkq_A Coatomer beta'-subunit; 96.7 0.027 9.3E-07 57.3 14.8 27 323-349 681-707 (814)
223 3bee_A Putative YFRE protein; 96.6 0.019 6.5E-07 40.2 9.3 67 320-387 3-72 (93)
224 3mkq_B Coatomer subunit alpha; 96.4 0.23 7.9E-06 39.0 15.7 44 154-203 17-60 (177)
225 3mkq_B Coatomer subunit alpha; 96.4 0.13 4.3E-06 40.5 13.3 130 296-455 13-142 (177)
226 1nzn_A CGI-135 protein, fissio 96.2 0.019 6.4E-07 42.3 7.4 64 357-421 34-102 (126)
227 1wy6_A Hypothetical protein ST 96.1 0.28 9.5E-06 36.3 15.1 66 393-459 91-156 (172)
228 1pc2_A Mitochondria fission pr 96.1 0.06 2.1E-06 41.2 9.9 82 304-387 14-100 (152)
229 1wy6_A Hypothetical protein ST 95.9 0.33 1.1E-05 35.9 14.4 63 215-284 94-156 (172)
230 3u64_A Protein TP_0956; tetrat 95.9 0.032 1.1E-06 47.8 8.3 90 85-174 177-272 (301)
231 2v5f_A Prolyl 4-hydroxylase su 95.8 0.13 4.4E-06 36.7 10.5 24 327-350 50-73 (104)
232 4h7y_A Dual specificity protei 95.6 0.081 2.8E-06 40.0 8.6 104 320-425 10-126 (161)
233 4h7y_A Dual specificity protei 95.4 0.37 1.3E-05 36.4 11.5 64 336-401 73-136 (161)
234 4ady_A RPN2, 26S proteasome re 94.7 4.3 0.00015 41.2 23.1 259 149-421 381-657 (963)
235 3o48_A Mitochondria fission 1 94.7 0.43 1.5E-05 35.2 9.9 67 390-456 37-106 (134)
236 1y8m_A FIS1; mitochondria, unk 94.6 1 3.6E-05 33.7 12.0 67 356-422 37-106 (144)
237 1qsa_A Protein (soluble lytic 94.5 3.8 0.00013 39.8 25.2 115 338-456 229-347 (618)
238 3lvg_A Clathrin heavy chain 1; 94.3 2.1E-06 7.3E-11 77.8 -22.5 210 106-336 53-276 (624)
239 4ady_A RPN2, 26S proteasome re 94.3 5.2 0.00018 40.6 23.9 305 144-455 341-656 (963)
240 3lvg_A Clathrin heavy chain 1; 93.9 1.9E-05 6.5E-10 71.8 -17.3 264 141-447 53-323 (624)
241 2ff4_A Probable regulatory pro 93.7 0.33 1.1E-05 44.3 9.6 56 363-419 176-231 (388)
242 4b4t_P 26S proteasome regulato 93.7 4.4 0.00015 37.6 18.2 94 292-385 141-245 (445)
243 1nzn_A CGI-135 protein, fissio 93.6 0.52 1.8E-05 34.6 8.6 67 251-317 33-103 (126)
244 4gns_B Protein CSD3, chitin bi 92.7 0.68 2.3E-05 45.8 10.6 53 366-419 345-397 (754)
245 4gns_B Protein CSD3, chitin bi 92.7 0.68 2.3E-05 45.9 10.5 54 400-455 344-398 (754)
246 4b4t_P 26S proteasome regulato 92.3 7.1 0.00024 36.2 19.5 195 84-281 29-246 (445)
247 2ff4_A Probable regulatory pro 91.6 1 3.4E-05 41.1 9.8 69 292-361 175-248 (388)
248 3txn_A 26S proteasome regulato 90.7 7.1 0.00024 35.3 14.2 166 254-420 20-208 (394)
249 3ffl_A Anaphase-promoting comp 89.7 2.8 9.7E-05 32.3 9.2 57 184-240 27-91 (167)
250 4fhn_B Nucleoporin NUP120; pro 88.6 10 0.00035 40.1 15.7 146 294-446 818-989 (1139)
251 3ffl_A Anaphase-promoting comp 88.2 3.5 0.00012 31.8 8.7 25 394-418 123-147 (167)
252 4fhn_B Nucleoporin NUP120; pro 88.0 9.8 0.00034 40.2 15.1 148 258-412 817-990 (1139)
253 1zbp_A Hypothetical protein VP 87.7 12 0.0004 31.6 12.5 53 82-136 8-60 (273)
254 2wpv_A GET4, UPF0363 protein Y 87.0 15 0.0005 32.0 18.3 81 251-350 132-215 (312)
255 4b4t_R RPN7, 26S proteasome re 86.3 8.6 0.00029 35.4 12.1 99 144-242 133-238 (429)
256 1v54_E Cytochrome C oxidase po 86.2 6.6 0.00023 27.3 8.8 45 271-315 28-72 (109)
257 1v54_E Cytochrome C oxidase po 86.2 6.7 0.00023 27.3 9.3 65 303-368 25-89 (109)
258 3o48_A Mitochondria fission 1 84.9 9.8 0.00034 28.1 10.3 68 355-422 37-107 (134)
259 2wpv_A GET4, UPF0363 protein Y 84.7 19 0.00066 31.3 19.1 167 255-455 35-215 (312)
260 3lpz_A GET4 (YOR164C homolog); 83.1 23 0.0008 31.0 21.8 168 255-456 37-215 (336)
261 2y69_E Cytochrome C oxidase su 82.8 12 0.00042 27.6 9.3 59 271-330 71-129 (152)
262 2y69_E Cytochrome C oxidase su 81.4 14 0.00048 27.3 8.9 47 306-352 71-117 (152)
263 4b4t_R RPN7, 26S proteasome re 81.0 12 0.0004 34.5 10.6 99 254-352 132-237 (429)
264 3lpz_A GET4 (YOR164C homolog); 80.8 29 0.00098 30.5 19.2 139 290-447 37-186 (336)
265 1zbp_A Hypothetical protein VP 78.5 9.8 0.00033 32.1 8.2 115 115-242 5-130 (273)
266 2p58_C Putative type III secre 77.5 13 0.00044 25.8 7.0 51 186-242 49-99 (116)
267 1y8m_A FIS1; mitochondria, unk 76.5 22 0.00074 26.7 12.1 68 320-387 36-106 (144)
268 3esl_A Checkpoint serine/threo 75.8 22 0.00074 28.5 9.1 83 344-427 58-149 (202)
269 2uwj_G Type III export protein 74.8 12 0.00042 25.8 6.3 51 186-242 48-98 (115)
270 2uwj_G Type III export protein 67.6 28 0.00095 24.1 6.8 78 337-422 20-97 (115)
271 2p58_C Putative type III secre 67.1 29 0.00098 24.1 7.5 76 338-421 22-97 (116)
272 4a1g_A Mitotic checkpoint seri 64.4 21 0.00072 27.1 6.5 54 124-177 82-136 (152)
273 2wvi_A Mitotic checkpoint seri 64.3 31 0.0011 26.5 7.5 54 376-429 78-132 (164)
274 3esl_A Checkpoint serine/threo 60.5 64 0.0022 25.8 11.7 96 296-391 42-148 (202)
275 2wvi_A Mitotic checkpoint seri 60.1 28 0.00096 26.8 6.6 56 124-179 77-133 (164)
276 3eiq_C Programmed cell death p 58.7 94 0.0032 27.6 10.6 65 396-461 220-286 (358)
277 4b4t_S RPN3, 26S proteasome re 53.9 98 0.0033 29.1 10.2 63 177-242 231-300 (523)
278 1wdy_A 2-5A-dependent ribonucl 52.9 35 0.0012 28.5 7.1 13 451-463 269-281 (285)
279 2d2s_A Exocyst complex compone 51.9 84 0.0029 25.9 8.7 24 112-135 23-46 (235)
280 3kae_A CDC27, possible protein 50.8 77 0.0026 24.6 7.4 27 429-455 115-141 (242)
281 4aez_C MAD3, mitotic spindle c 50.2 37 0.0013 27.6 6.1 53 375-427 131-184 (223)
282 4aez_C MAD3, mitotic spindle c 49.6 36 0.0012 27.7 5.9 54 124-177 131-185 (223)
283 3txn_A 26S proteasome regulato 48.3 1.5E+02 0.0053 26.6 24.1 27 178-204 20-46 (394)
284 1k1a_A B-cell lymphoma 3-encod 47.5 93 0.0032 25.0 8.7 14 223-236 87-100 (241)
285 1wdy_A 2-5A-dependent ribonucl 47.4 28 0.00095 29.2 5.5 45 183-231 8-55 (285)
286 4g8k_A 2-5A-dependent ribonucl 45.7 1.3E+02 0.0044 26.0 9.8 105 344-463 220-329 (337)
287 3ctd_A Putative ATPase, AAA fa 44.1 1.2E+02 0.0042 24.3 9.9 70 255-324 34-111 (213)
288 2r9g_A AAA ATPase, central reg 43.8 1.2E+02 0.0042 24.1 10.4 56 266-322 27-87 (204)
289 1k1a_A B-cell lymphoma 3-encod 43.7 59 0.002 26.3 6.9 86 114-203 13-102 (241)
290 3kea_A K1L; tropism, ANK repea 43.3 95 0.0033 26.2 8.3 14 345-358 210-223 (285)
291 1qsa_A Protein (soluble lytic 42.9 2.4E+02 0.0082 27.3 35.7 229 106-351 101-347 (618)
292 4b4t_S RPN3, 26S proteasome re 42.2 2.2E+02 0.0076 26.7 11.0 65 107-171 231-299 (523)
293 3ltm_A Alpha-REP4; protein eng 41.9 1.3E+02 0.0043 23.8 18.6 17 141-157 32-48 (211)
294 3bge_A Predicted ATPase; struc 41.8 1.3E+02 0.0045 23.9 9.4 37 266-302 20-56 (201)
295 3jxi_A Vanilloid receptor-rela 41.5 19 0.00065 30.0 3.4 118 114-236 9-161 (260)
296 2d2s_A Exocyst complex compone 41.2 1.5E+02 0.0051 24.4 9.8 90 294-386 24-119 (235)
297 4ets_A Ferric uptake regulatio 41.1 60 0.002 24.9 5.9 47 111-157 36-84 (162)
298 3eiq_C Programmed cell death p 40.7 1.9E+02 0.0066 25.6 13.8 75 361-436 220-296 (358)
299 2zu6_B Programmed cell death p 37.3 1.5E+02 0.0053 25.5 8.4 64 396-460 169-234 (307)
300 2ion_A PDCD4, programmed cell 37.0 1.3E+02 0.0046 22.6 8.6 62 216-284 13-76 (152)
301 2ijq_A Hypothetical protein; s 36.7 1.4E+02 0.0048 22.8 7.7 53 334-386 43-103 (161)
302 3pvs_A Replication-associated 36.6 2.5E+02 0.0087 25.7 13.7 16 225-240 205-220 (447)
303 3hra_A Ankyrin repeat family p 35.4 73 0.0025 24.8 6.0 13 118-130 13-25 (201)
304 3hra_A Ankyrin repeat family p 35.4 70 0.0024 24.9 5.9 13 223-235 80-92 (201)
305 3jxi_A Vanilloid receptor-rela 35.4 32 0.0011 28.5 3.9 55 184-238 9-72 (260)
306 2keb_A DNA polymerase subunit 34.3 1.1E+02 0.0037 21.1 5.3 30 378-407 29-58 (101)
307 2nsz_A Programmed cell death p 33.9 1.4E+02 0.0046 21.8 9.9 62 216-284 11-74 (129)
308 3qil_A Clathrin heavy chain 1; 33.6 8 0.00027 27.8 -0.2 75 76-163 11-85 (125)
309 3ygs_P Procaspase 9; apoptosis 32.8 88 0.003 21.4 5.1 32 87-123 53-84 (97)
310 3t8k_A Uncharacterized protein 31.9 1.8E+02 0.0061 22.6 8.1 50 412-461 132-184 (186)
311 3mv2_A Coatomer subunit alpha; 31.4 2.6E+02 0.0089 24.3 10.0 116 333-465 124-244 (325)
312 2fe3_A Peroxide operon regulat 31.0 1.6E+02 0.0056 21.8 6.9 45 112-156 26-70 (145)
313 2ijq_A Hypothetical protein; s 30.4 1.8E+02 0.0062 22.2 8.1 52 405-456 44-103 (161)
314 1bpo_A Protein (clathrin); cla 30.3 3.3E+02 0.011 25.2 12.2 141 85-239 343-483 (494)
315 3kea_A K1L; tropism, ANK repea 29.2 89 0.0031 26.4 5.7 20 330-349 165-184 (285)
316 2xig_A Ferric uptake regulatio 29.0 1.8E+02 0.0062 21.7 7.7 47 110-156 29-75 (150)
317 1wgl_A TOLL-interacting protei 28.9 70 0.0024 19.6 3.5 22 441-462 36-57 (59)
318 4gq2_M Nucleoporin NUP120; bet 28.7 2.7E+02 0.0092 28.7 9.9 108 294-407 816-950 (950)
319 2o03_A Probable zinc uptake re 27.9 1.3E+02 0.0044 21.9 5.6 45 364-408 16-60 (131)
320 2b7e_A PRE-mRNA processing pro 27.7 47 0.0016 20.4 2.5 29 88-117 3-31 (59)
321 3eu9_A Huntingtin-interacting 27.1 1.6E+02 0.0056 23.4 6.9 14 117-130 16-29 (240)
322 3eyy_A Putative iron uptake re 26.9 1.8E+02 0.006 21.6 6.3 43 113-156 24-66 (145)
323 2f6m_A Suppressor protein STP2 26.9 1.2E+02 0.0041 19.0 4.5 44 110-154 5-48 (65)
324 4gq2_M Nucleoporin NUP120; bet 26.4 3.7E+02 0.013 27.7 10.5 27 430-456 899-925 (950)
325 3eyy_A Putative iron uptake re 25.3 2.1E+02 0.0071 21.2 7.0 34 374-407 33-66 (145)
326 3mwm_A ZUR, putative metal upt 25.1 1.1E+02 0.0038 22.6 4.8 47 363-409 18-64 (139)
327 4ets_A Ferric uptake regulatio 24.6 2.1E+02 0.0072 21.7 6.5 57 134-191 25-83 (162)
328 3aji_A 26S proteasome non-ATPa 24.0 2.3E+02 0.0079 22.4 7.3 19 114-132 10-28 (231)
329 2qx5_A Nucleoporin NIC96; mRNA 23.9 5.1E+02 0.018 25.2 18.1 44 108-153 154-197 (661)
330 3mwm_A ZUR, putative metal upt 23.5 1.3E+02 0.0045 22.2 5.0 48 111-158 17-64 (139)
331 2o03_A Probable zinc uptake re 23.4 1.5E+02 0.0051 21.5 5.2 46 112-157 15-60 (131)
332 2crb_A Nuclear receptor bindin 23.3 1.6E+02 0.0055 20.0 4.6 24 396-419 18-41 (97)
333 4a1g_A Mitotic checkpoint seri 23.2 2.4E+02 0.0083 21.2 14.0 69 139-210 65-134 (152)
334 3pvs_A Replication-associated 22.8 4.4E+02 0.015 24.1 14.0 25 335-359 267-291 (447)
335 3bqo_A Telomeric repeat-bindin 22.8 2.9E+02 0.01 22.0 8.6 25 218-242 123-147 (211)
336 3ltm_A Alpha-REP4; protein eng 22.3 2.8E+02 0.0096 21.6 20.1 154 105-281 31-184 (211)
337 1mzb_A Ferric uptake regulatio 21.5 2.4E+02 0.0082 20.5 7.5 62 348-410 8-70 (136)
338 2yru_A Steroid receptor RNA ac 21.2 1.2E+02 0.0041 21.8 4.1 17 153-169 72-88 (118)
339 2rfa_A Transient receptor pote 20.9 3.1E+02 0.011 21.6 8.0 18 220-237 42-59 (232)
340 1n11_A Ankyrin; clathrin, BAND 20.6 1.9E+02 0.0066 26.0 6.7 54 402-464 317-373 (437)
341 2w57_A Ferric uptake regulatio 20.6 2.7E+02 0.0092 20.7 7.0 62 347-409 6-68 (150)
342 2yru_A Steroid receptor RNA ac 20.6 1.6E+02 0.0055 21.1 4.6 41 276-316 49-89 (118)
343 2pnn_A Transient receptor pote 20.2 1E+02 0.0036 25.5 4.4 56 113-168 16-80 (273)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-34 Score=285.90 Aligned_cols=369 Identities=11% Similarity=0.004 Sum_probs=197.9
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc
Q 036577 79 EGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158 (470)
Q Consensus 79 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 158 (470)
..+...|++++|+.+|+.+....| +..++..++.+|.+.|++++|+.+|+++... +++..+++.++.+|.+.|++
T Consensus 92 ~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 166 (597)
T 2xpi_A 92 HDALMQQQYKCAAFVGEKVLDITG---NPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDW 166 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHccCchHHHHHHHHHHhhCC---CchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhH
Confidence 344555667777777777765443 3456666666666777777777766666432 45666666666666666666
Q ss_pred chHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---------------
Q 036577 159 SPGFVVLGRILRS---------------CFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGC--------------- 208 (470)
Q Consensus 159 ~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~--------------- 208 (470)
++|.++|+++... +.+.+..+|+.++.+|.+.|++++|+++|+++.+.+.
T Consensus 167 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 246 (597)
T 2xpi_A 167 QGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLL 246 (597)
T ss_dssp HHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCS
T ss_pred HHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcc
Confidence 6666666632211 1123456666666666666666666666666543321
Q ss_pred -------------------------------------------------------CCCcchHHHHHHHHHhcCChHHHHH
Q 036577 209 -------------------------------------------------------EPNVITYSTLINGLCRTGHTIVALN 233 (470)
Q Consensus 209 -------------------------------------------------------~~~~~~~~~l~~~~~~~g~~~~a~~ 233 (470)
+++..+|+.++.+|.+.|++++|++
T Consensus 247 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 326 (597)
T 2xpi_A 247 TADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLA 326 (597)
T ss_dssp CHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHH
Confidence 1445556666666667777777777
Q ss_pred HHHHHHhcCCCCCc---------------------------ccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 036577 234 LFEEMANGNGEIGV---------------------------VCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINP 286 (470)
Q Consensus 234 ~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 286 (470)
+|+++...++.... ..+.+..++..++.+|.+.|++++|.++|+++.+.. +.
T Consensus 327 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 405 (597)
T 2xpi_A 327 ITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQ 405 (597)
T ss_dssp HHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CC
Confidence 77766654411000 012334445555555555555555555555544421 12
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 036577 287 NVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMD 366 (470)
Q Consensus 287 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 366 (470)
+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+.... +..+|+.++.
T Consensus 406 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 483 (597)
T 2xpi_A 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGV 483 (597)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 34455555555555555555555555554443 334445555555555555555555555555544322 4455555555
Q ss_pred HHHcCCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 036577 367 GFCLTGRVNRAKELFVSMESN----RCMHD--VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFE 440 (470)
Q Consensus 367 ~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 440 (470)
.|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+|..+..+|.+
T Consensus 484 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 562 (597)
T 2xpi_A 484 VAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLH 562 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 555555555555555555443 22333 4455555555555555555555555555432 1244455555555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 036577 441 IHQVERAFKLFDEMRR 456 (470)
Q Consensus 441 ~g~~~~A~~~~~~m~~ 456 (470)
.|++++|.++|+++.+
T Consensus 563 ~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 563 KKIPGLAITHLHESLA 578 (597)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHh
Confidence 5555555555555554
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.1e-34 Score=282.78 Aligned_cols=347 Identities=12% Similarity=0.022 Sum_probs=276.8
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC---------------CCCCCH
Q 036577 78 GEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNST---------------GLFPDL 142 (470)
Q Consensus 78 ~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~---------------~~~~~~ 142 (470)
+..+...|++++|+.+|+.+... ++++.+++.++.+|.+.|++++|+++|+++... +.+++.
T Consensus 124 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (597)
T 2xpi_A 124 AQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEA 200 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhH
Confidence 34455677888888888877543 146777777777777777777777777743211 123346
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHhCCC-------------------------------------------------
Q 036577 143 YTYNILINCFCKMGRVSPGFVVLGRILRSCF------------------------------------------------- 173 (470)
Q Consensus 143 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~------------------------------------------------- 173 (470)
.+|..++.+|.+.|++++|.++|+++.+.+.
T Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (597)
T 2xpi_A 201 SMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLN 280 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHH
Confidence 6777777777777777777777777654321
Q ss_pred ---------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------------------------
Q 036577 174 ---------------------TPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGC------------------------ 208 (470)
Q Consensus 174 ---------------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~------------------------ 208 (470)
+++..+|+.++.+|.+.|++++|.++|+++.+.+.
T Consensus 281 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 360 (597)
T 2xpi_A 281 KTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYL 360 (597)
T ss_dssp TTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHH
T ss_pred HHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHH
Confidence 25666777777888888888888888877765431
Q ss_pred ---------CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 036577 209 ---------EPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKM 279 (470)
Q Consensus 209 ---------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 279 (470)
+.+..+|+.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++
T Consensus 361 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 433 (597)
T 2xpi_A 361 ISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-------PQFGPAWIGFAHSFAIEGEHDQAISAYTTA 433 (597)
T ss_dssp HHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2345677778888888888888888888887765 567889999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC
Q 036577 280 KDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQI----GVR 355 (470)
Q Consensus 280 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~ 355 (470)
...+ +.+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..
T Consensus 434 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 511 (597)
T 2xpi_A 434 ARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN 511 (597)
T ss_dssp HHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc
Confidence 8864 4578899999999999999999999999999875 567899999999999999999999999999887 667
Q ss_pred CC--HhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHH
Q 036577 356 PN--AFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNT 433 (470)
Q Consensus 356 ~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 433 (470)
|+ ..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+|..++.+|.+.|++++|.+.|+++.+.... +...+..
T Consensus 512 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~ 589 (597)
T 2xpi_A 512 EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN-EIMASDL 589 (597)
T ss_dssp SGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-ChHHHHH
Confidence 77 7899999999999999999999999998875 558999999999999999999999999999976322 4556666
Q ss_pred HHHHH
Q 036577 434 LFIGL 438 (470)
Q Consensus 434 l~~~~ 438 (470)
+..+|
T Consensus 590 l~~~~ 594 (597)
T 2xpi_A 590 LKRAL 594 (597)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 65544
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.9e-30 Score=242.96 Aligned_cols=364 Identities=15% Similarity=0.051 Sum_probs=324.4
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 036577 81 DITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSP 160 (470)
Q Consensus 81 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 160 (470)
+...|++++|++.|+.+.+..|. +...+..+...+.+.|++++|...++...+.. +.+..+|..+...+.+.|++++
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQEPD--NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 34578999999999999998887 78889999999999999999999999988865 6788999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036577 161 GFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240 (470)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 240 (470)
|.+.|+++++.. +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++..
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999999864 4567789999999999999999999999998864 23455677888899999999999999999998
Q ss_pred cCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 036577 241 GNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQ 320 (470)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 320 (470)
.. +.+..+|..+...+.+.|++++|...|+++...+ +.+...+..+...+...|++++|...+++..+.. +
T Consensus 164 ~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p 234 (388)
T 1w3b_A 164 TQ-------PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-P 234 (388)
T ss_dssp HC-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-T
T ss_pred hC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence 76 5678899999999999999999999999998864 3467889999999999999999999999998874 4
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036577 321 PNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILI 400 (470)
Q Consensus 321 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 400 (470)
.+..++..+..++.+.|++++|...++++.+.++. +..+|..++.++.+.|++++|...|+++.+.. +.+..+|..++
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 312 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLA 312 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHH
Confidence 56788999999999999999999999999998644 67889999999999999999999999998864 56899999999
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 036577 401 NGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADT 463 (470)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 463 (470)
..+...|++++|.+.++++.+.. +.+..++..+..++.+.|++++|.+.++++.+ +.|+.
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~ 372 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTF 372 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCC
Confidence 99999999999999999998752 33577899999999999999999999999997 56653
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.1e-31 Score=255.72 Aligned_cols=212 Identities=16% Similarity=0.167 Sum_probs=163.4
Q ss_pred CChHHHHHHHHHHHhcCCCCCcccCC-CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-
Q 036577 226 GHTIVALNLFEEMANGNGEIGVVCEP-NTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYAND- 303 (470)
Q Consensus 226 g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~- 303 (470)
|+...+.+.+.+...... ... ....++.+|++|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.+.
T Consensus 3 G~~~s~~e~L~~~~~~k~-----~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~ 77 (501)
T 4g26_A 3 GHMASPSENLSRKAKKKA-----IQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAA 77 (501)
T ss_dssp --------------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCC
T ss_pred ccccchHHHHHHHHHHhc-----ccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCch
Confidence 444455555555444432 122 2345777888888888888888888888888888888888888888876654
Q ss_pred --------HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHH
Q 036577 304 --------WNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVN 375 (470)
Q Consensus 304 --------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 375 (470)
.+.|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++
T Consensus 78 ~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~ 157 (501)
T 4g26_A 78 TESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDAD 157 (501)
T ss_dssp SSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHH
T ss_pred hhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHH
Confidence 678888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 036577 376 RAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIH 442 (470)
Q Consensus 376 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 442 (470)
+|.++|++|.+.|+.||..+|+.||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..+
T Consensus 158 ~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 158 KAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 8888888888888888888888888888888888888888888888888888888888888877643
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.7e-31 Score=253.07 Aligned_cols=201 Identities=16% Similarity=0.174 Sum_probs=177.0
Q ss_pred HHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCC---------H
Q 036577 270 DKAKELFLKMKDENINPNV-VTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGK---------M 339 (470)
Q Consensus 270 ~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~ 339 (470)
..+..+.+.+.+++..+.+ ..++.+|++|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455566777777665443 46888999999999999999999999999999999999999999987665 6
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 036577 340 DEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEM 419 (470)
Q Consensus 340 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (470)
++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhhhccC
Q 036577 420 LSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTWTYRTFI 470 (470)
Q Consensus 420 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 470 (470)
.+.|+.||..||+.|+.+|++.|+.++|.+++++|.+.|+.|+..||+.++
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~ 217 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIE 217 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998763
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.6e-27 Score=223.15 Aligned_cols=345 Identities=14% Similarity=0.077 Sum_probs=305.4
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 036577 81 DITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSP 160 (470)
Q Consensus 81 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 160 (470)
+...|++++|...++.+++..|. +..+|..+..++.+.|++++|+..|+++.+.. +.+..+|..+..++.+.|++++
T Consensus 43 ~~~~~~~~~a~~~~~~a~~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 119 (388)
T 1w3b_A 43 HFQCRRLDRSAHFSTLAIKQNPL--LAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEG 119 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHH
Confidence 34567999999999999998876 89999999999999999999999999998864 5567789999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036577 161 GFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240 (470)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 240 (470)
|.+.++++++.. +.+...+..+...+...|++++|.+.|+++.+.. +.+..+|..+...+...|++++|+..|+++..
T Consensus 120 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 197 (388)
T 1w3b_A 120 AVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197 (388)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999874 4456788889999999999999999999998763 34578899999999999999999999999998
Q ss_pred cCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 036577 241 GNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQ 320 (470)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 320 (470)
.+ +.+...+..+...+...|++++|...+++..... +.+..++..+..+|.+.|++++|...|+++.+.. +
T Consensus 198 ~~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p 268 (388)
T 1w3b_A 198 LD-------PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-P 268 (388)
T ss_dssp HC-------TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-S
T ss_pred cC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-C
Confidence 76 5678899999999999999999999999988763 3368899999999999999999999999999875 5
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036577 321 PNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILI 400 (470)
Q Consensus 321 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 400 (470)
.+..+|..+..++.+.|++++|...++++.+..+ .+..++..++..+...|++++|...++++.+.. +.+..++..++
T Consensus 269 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 346 (388)
T 1w3b_A 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLA 346 (388)
T ss_dssp SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 5678899999999999999999999999998854 478899999999999999999999999998764 55788999999
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCC
Q 036577 401 NGYCKNKEIEGALSLYSEMLSKGIKP-DVVIYNTLFIGLFEIHQ 443 (470)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 443 (470)
.+|.+.|++++|...|+++++. .| +...|..+...+...|+
T Consensus 347 ~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 347 SVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999999975 44 45677777777766553
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=3e-25 Score=211.94 Aligned_cols=353 Identities=13% Similarity=0.068 Sum_probs=284.2
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 036577 89 EAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 168 (470)
Q Consensus 89 ~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 168 (470)
.+...|..+....|. ++..|..++..+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++++
T Consensus 10 ~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 10 GVDLGTENLYFQSMA--DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp -------------CH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccccccccccHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344555556665554 78899999999999999999999999998764 667889999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-c---chHHHH------------HHHHHhcCChHHHH
Q 036577 169 LRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPN-V---ITYSTL------------INGLCRTGHTIVAL 232 (470)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~-~---~~~~~l------------~~~~~~~g~~~~a~ 232 (470)
++.+ +.+..++..++.+|.+.|++++|.+.|+++.+.. |+ . ..+..+ ...+...|++++|+
T Consensus 87 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 87 IQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9875 5568899999999999999999999999998753 43 3 455555 44488999999999
Q ss_pred HHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 036577 233 NLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLI 312 (470)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 312 (470)
..|+++.... +.+..++..++.+|.+.|++++|.+.|+++.... +.+..++..+..+|...|++++|...|+
T Consensus 164 ~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 164 AFLDKILEVC-------VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp HHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhC-------CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999876 6688899999999999999999999999998753 4578999999999999999999999999
Q ss_pred HHHHCCCCCCHhHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHcCCCHHH
Q 036577 313 EMMDQGVQPNVVTFNVI------------MDELCKNGKMDEASRLLDLMIQIGVRPN----AFVYNTLMDGFCLTGRVNR 376 (470)
Q Consensus 313 ~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~ 376 (470)
++.+.. +.+...+..+ ...+...|++++|...++.+.+..+. + ...+..++.++.+.|++++
T Consensus 236 ~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 236 ECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHH
Confidence 998764 3445555544 78899999999999999999987433 3 4478889999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHH------------HHhcC-
Q 036577 377 AKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD-VVIYNTLFIG------------LFEIH- 442 (470)
Q Consensus 377 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~------------~~~~g- 442 (470)
|...++++.+.. +.+...|..++.+|...|++++|...++++++. .|+ ...+..+..+ |...|
T Consensus 314 A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~ 390 (450)
T 2y4t_A 314 AIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGV 390 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCS
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCC
Confidence 999999988764 447899999999999999999999999999975 444 4566665533 33334
Q ss_pred ----CHHHHHHHHHHH-HHcCCCCC
Q 036577 443 ----QVERAFKLFDEM-RRDGVAAD 462 (470)
Q Consensus 443 ----~~~~A~~~~~~m-~~~g~~p~ 462 (470)
+.+++.+.++++ .+ ..||
T Consensus 391 ~~~~~~~~~~~~y~~~~l~--~~pd 413 (450)
T 2y4t_A 391 KRNAKKQEIIKAYRKLALQ--WHPD 413 (450)
T ss_dssp STTCCTTHHHHHHHHHHHH--SCGG
T ss_pred CccCCHHHHHHHHHHHHHH--hCCC
Confidence 567778888764 33 4554
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1e-25 Score=218.90 Aligned_cols=374 Identities=10% Similarity=-0.006 Sum_probs=313.5
Q ss_pred HHhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036577 72 ERFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151 (470)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 151 (470)
+.+...|..+...|++++|+..|+.++...| +..+|..++.++.+.|++++|+..++++.+.+ +.+..++..+..+
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKE---DPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCc---cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3344455666778999999999999999874 68899999999999999999999999999875 6678899999999
Q ss_pred HHhcCCcchHHHHHHHHHhCCCC---------------------------------------------------------
Q 036577 152 FCKMGRVSPGFVVLGRILRSCFT--------------------------------------------------------- 174 (470)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~~~~--------------------------------------------------------- 174 (470)
+...|++++|...|+++.+.+..
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 99999999999999999876421
Q ss_pred ---------------------CCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----cCC--------CCCcchHHH
Q 036577 175 ---------------------PDAVTFNSLIKGLCA---ESRIMEAAALFTKLKA-----FGC--------EPNVITYST 217 (470)
Q Consensus 175 ---------------------~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~-----~g~--------~~~~~~~~~ 217 (470)
.+...+......+.. .|++++|...|+++.+ ... +.+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 013334444444444 8999999999999987 311 223567888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036577 218 LINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHG 297 (470)
Q Consensus 218 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 297 (470)
+...+...|++++|...++++.... |+...+..+..++...|++++|.+.++.+.... +.+...+..+...
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 313 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELF--------PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQM 313 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--------ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHH
Confidence 8999999999999999999998875 238889999999999999999999999998864 3467789999999
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHH
Q 036577 298 FCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRA 377 (470)
Q Consensus 298 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 377 (470)
|...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.... +...+..++..+...|++++|
T Consensus 314 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 314 NFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp HHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999999875 446678889999999999999999999999987543 678889999999999999999
Q ss_pred HHHHHHHHHCCCC-CC----HHHHHHHHHHHHH---cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 036577 378 KELFVSMESNRCM-HD----VFSYSILINGYCK---NKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFK 449 (470)
Q Consensus 378 ~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 449 (470)
...++++.+.... ++ ...|..+..++.. .|++++|...++++.+.. +.+..++..+...+...|++++|.+
T Consensus 392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 470 (514)
T 2gw1_A 392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAIT 470 (514)
T ss_dssp HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999998764211 11 4489999999999 999999999999998764 2357788899999999999999999
Q ss_pred HHHHHHHcCCCCCh
Q 036577 450 LFDEMRRDGVAADT 463 (470)
Q Consensus 450 ~~~~m~~~g~~p~~ 463 (470)
.++++.+ +.|+.
T Consensus 471 ~~~~a~~--~~~~~ 482 (514)
T 2gw1_A 471 LFEESAD--LARTM 482 (514)
T ss_dssp HHHHHHH--HCSSH
T ss_pred HHHHHHH--hcccc
Confidence 9999998 45553
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=1.3e-24 Score=207.42 Aligned_cols=351 Identities=11% Similarity=0.064 Sum_probs=286.7
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 036577 78 GEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157 (470)
Q Consensus 78 ~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 157 (470)
+..+...|++++|+.+|+.+++..|. +..+|..++.++...|++++|+..|+++.+.+ +.+..++..+..+|...|+
T Consensus 33 ~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 109 (450)
T 2y4t_A 33 GKKLLAAGQLADALSQFHAAVDGDPD--NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGK 109 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCC
Confidence 34455678999999999999998876 89999999999999999999999999999875 6678899999999999999
Q ss_pred cchHHHHHHHHHhCCCCCCH---HHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 036577 158 VSPGFVVLGRILRSCFTPDA---VTFNSL------------IKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGL 222 (470)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 222 (470)
+++|.+.|+++.+.. +.+. ..+..+ ...+...|++++|+..|+++.+.. +.+...+..+..+|
T Consensus 110 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 187 (450)
T 2y4t_A 110 LDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECF 187 (450)
T ss_dssp HHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 999999999999864 3334 555555 445889999999999999998764 44678899999999
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHH--------
Q 036577 223 CRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSL-------- 294 (470)
Q Consensus 223 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-------- 294 (470)
.+.|++++|++.|+++.... +.+..++..++.++...|++++|...|+++.... +.+...+..+
T Consensus 188 ~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 188 IKEGEPRKAISDLKAASKLK-------NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHTTCGGGGHHHHHHHHHHH-------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHH
Confidence 99999999999999998875 6678999999999999999999999999998753 2344555544
Q ss_pred ----HHHHHccCCHHHHHHHHHHHHHCCCCCC-----HhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 036577 295 ----IHGFCYANDWNEAKCLLIEMMDQGVQPN-----VVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLM 365 (470)
Q Consensus 295 ----i~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 365 (470)
...+.+.|++++|...|+++.+.. |+ ...+..+..++.+.|++++|...++.+.+..+. +...|..++
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~ 336 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKDRA 336 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 788999999999999999998863 43 447888899999999999999999999987533 789999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH------------HHHcC-----ChhHHHHHHHH-HHHCCCCCC
Q 036577 366 DGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILING------------YCKNK-----EIEGALSLYSE-MLSKGIKPD 427 (470)
Q Consensus 366 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~-~~~~~~~p~ 427 (470)
.+|...|++++|...++++.+.. +-+...+..+..+ |...| +.+++.+.+++ .++. .||
T Consensus 337 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~--~pd 413 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQW--HPD 413 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHS--CGG
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHh--CCC
Confidence 99999999999999999998864 3367777777633 33344 56777888886 3432 333
Q ss_pred -----------HhHHHHHHHHHHhcCCHHHH
Q 036577 428 -----------VVIYNTLFIGLFEIHQVERA 447 (470)
Q Consensus 428 -----------~~~~~~l~~~~~~~g~~~~A 447 (470)
...+..+..+|...|+.+++
T Consensus 414 ~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 414 NFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp GCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 12555566666666655443
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=8.4e-24 Score=206.58 Aligned_cols=370 Identities=13% Similarity=0.087 Sum_probs=299.8
Q ss_pred HHHHhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 036577 70 LRERFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149 (470)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li 149 (470)
....+...|..+...|++++|+..|+.+++..|. ++.+|..+..++.+.|++++|++.|+++.+.+ +.+..++..+.
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la 100 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN--EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC--CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHH
Confidence 3455566677778889999999999999999886 89999999999999999999999999998876 66788999999
Q ss_pred HHHHhcCCcchHHHHHHHHHhCCCC-------------------------------------CCHH--------------
Q 036577 150 NCFCKMGRVSPGFVVLGRILRSCFT-------------------------------------PDAV-------------- 178 (470)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~~~~~~~~-------------------------------------~~~~-------------- 178 (470)
.++...|++++|...|+.+ ..... |+..
T Consensus 101 ~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 9999999999999998633 21100 1100
Q ss_pred ----------------HHHHHHHHHH--------hcCCHHHHHHHHHHHHhcCCCCC--------cchHHHHHHHHHhcC
Q 036577 179 ----------------TFNSLIKGLC--------AESRIMEAAALFTKLKAFGCEPN--------VITYSTLINGLCRTG 226 (470)
Q Consensus 179 ----------------~~~~l~~~~~--------~~g~~~~a~~~~~~~~~~g~~~~--------~~~~~~l~~~~~~~g 226 (470)
....+...+. ..|++++|..+|+++.+.. |+ ..++..+...+...|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcc
Confidence 1112222211 1247889999999998753 43 234667778888999
Q ss_pred ChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH
Q 036577 227 HTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNE 306 (470)
Q Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 306 (470)
++++|.+.++++.... |+...+..+...+...|++++|.+.++.+.... +.+..++..+...+...|++++
T Consensus 258 ~~~~A~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 258 NLLDAQVLLQESINLH--------PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp CHHHHHHHHHHHHHHC--------CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHHHhcC--------CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHH
Confidence 9999999999999865 458889999999999999999999999998764 3468889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 036577 307 AKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMES 386 (470)
Q Consensus 307 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 386 (470)
|...++++.+.. +.+...+..+..++...|++++|...++++.+..+. +...+..+...+...|++++|...|+++.+
T Consensus 329 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 329 AKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999998875 445678889999999999999999999999988644 677899999999999999999999999876
Q ss_pred CC-----CCCCHHHHHHHHHHHHHc----------CChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 036577 387 NR-----CMHDVFSYSILINGYCKN----------KEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLF 451 (470)
Q Consensus 387 ~~-----~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 451 (470)
.. .......+.....++... |++++|...|+++.+... .+...+..+...+...|++++|.+.|
T Consensus 407 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 42 111333455566778888 999999999999997632 36778999999999999999999999
Q ss_pred HHHHHc
Q 036577 452 DEMRRD 457 (470)
Q Consensus 452 ~~m~~~ 457 (470)
+++.+.
T Consensus 486 ~~al~~ 491 (537)
T 3fp2_A 486 EDSAIL 491 (537)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999873
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.2e-23 Score=200.40 Aligned_cols=343 Identities=13% Similarity=0.008 Sum_probs=286.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIK 185 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (470)
....|......+.+.|++++|+..|+++.+.+ |+...+..+..++...|++++|.+.++++++.+ +.+..+|..++.
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 35678888999999999999999999999875 799999999999999999999999999999875 557789999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCC------------------------------------------------------
Q 036577 186 GLCAESRIMEAAALFTKLKAFGCEPN------------------------------------------------------ 211 (470)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~------------------------------------------------------ 211 (470)
+|...|++++|...|+++...+. ++
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 99999999999999999877642 11
Q ss_pred -------------------------cchHHHHHHHHHh---cCChHHHHHHHHHHHh-----c--CCCCCcccCCCHhhH
Q 036577 212 -------------------------VITYSTLINGLCR---TGHTIVALNLFEEMAN-----G--NGEIGVVCEPNTVTY 256 (470)
Q Consensus 212 -------------------------~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~-----~--~~~~~~~~~~~~~~~ 256 (470)
...+......+.. .|++++|+..|+++.. . .+......+.+..++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 1222223333333 8999999999999987 3 110000003346788
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc
Q 036577 257 TTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKN 336 (470)
Q Consensus 257 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 336 (470)
..+...+...|++++|...++.+.... |+...+..+..++...|++++|...++++.+.. +.+...+..+...+...
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHh
Confidence 889999999999999999999998864 338889999999999999999999999998875 55677889999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 036577 337 GKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLY 416 (470)
Q Consensus 337 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 416 (470)
|++++|...++++.+.... +...+..++..+...|++++|...++.+.+.. +.+...+..+..++...|++++|...+
T Consensus 318 ~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999988654 67789999999999999999999999998764 446788999999999999999999999
Q ss_pred HHHHHCCCC-CC----HhHHHHHHHHHHh---cCCHHHHHHHHHHHHHc
Q 036577 417 SEMLSKGIK-PD----VVIYNTLFIGLFE---IHQVERAFKLFDEMRRD 457 (470)
Q Consensus 417 ~~~~~~~~~-p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~ 457 (470)
+++.+.... ++ ...|..+...+.. .|++++|.+.++++.+.
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~ 444 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence 999864221 11 3388899999999 99999999999999874
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=2.5e-21 Score=178.64 Aligned_cols=318 Identities=13% Similarity=0.055 Sum_probs=236.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036577 107 VSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKG 186 (470)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (470)
+..+..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+..+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 4556666677777777777777777766653 4456667777777777777777777777776653 3355667777777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC--CCcchHHHH------------HHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCC
Q 036577 187 LCAESRIMEAAALFTKLKAFGCE--PNVITYSTL------------INGLCRTGHTIVALNLFEEMANGNGEIGVVCEPN 252 (470)
Q Consensus 187 ~~~~g~~~~a~~~~~~~~~~g~~--~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 252 (470)
+...|++++|...|+++.+.... .+...+..+ ...+...|++++|++.++++.... +.+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~ 153 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-------VWD 153 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTC
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCc
Confidence 77777777777777777654210 123333333 577889999999999999998876 567
Q ss_pred HhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHH-----
Q 036577 253 TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFN----- 327 (470)
Q Consensus 253 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----- 327 (470)
...+..+..++...|++++|...++.+.... +.+...+..+...+...|++++|...+++..+.. +.+...+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~ 231 (359)
T 3ieg_A 154 AELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV 231 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHH
Confidence 8889999999999999999999999998864 4578889999999999999999999999998764 33344333
Q ss_pred -------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----hHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 036577 328 -------VIMDELCKNGKMDEASRLLDLMIQIGVRPNA----FVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSY 396 (470)
Q Consensus 328 -------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 396 (470)
.+...+.+.|++++|...++++.+.... +. ..+..+..++...|++++|...+++..+.. +.+...|
T Consensus 232 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 309 (359)
T 3ieg_A 232 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNAL 309 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHH
Confidence 2356688899999999999998887543 33 234557788889999999999999888763 4478888
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHH
Q 036577 397 SILINGYCKNKEIEGALSLYSEMLSKGIKPD-VVIYNTLFIGLF 439 (470)
Q Consensus 397 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 439 (470)
..+..++...|++++|...|+++.+. .|+ ...+..+..+..
T Consensus 310 ~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 310 KDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHH
Confidence 89999999999999999999999865 344 445555555443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=2.8e-21 Score=178.31 Aligned_cols=312 Identities=10% Similarity=0.029 Sum_probs=262.0
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 036577 78 GEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157 (470)
Q Consensus 78 ~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 157 (470)
|..+...|++++|+..|+.+++..|. +..+|..+..++...|++++|+..|+++.+.. +.+...+..+..++...|+
T Consensus 10 ~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 86 (359)
T 3ieg_A 10 GKKLLAAGQLADALSQFHAAVDGDPD--NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGK 86 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCC
Confidence 44456778999999999999998886 88999999999999999999999999998874 5578899999999999999
Q ss_pred cchHHHHHHHHHhCCCC---CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 036577 158 VSPGFVVLGRILRSCFT---PDAVTFNSL------------IKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGL 222 (470)
Q Consensus 158 ~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 222 (470)
+++|...++++.+.. + .+...+..+ ...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 87 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 164 (359)
T 3ieg_A 87 LDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECF 164 (359)
T ss_dssp HHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHH
Confidence 999999999999874 3 345555555 578899999999999999998764 45678888999999
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHH----------
Q 036577 223 CRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYN---------- 292 (470)
Q Consensus 223 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---------- 292 (470)
...|++++|...++++.... +.+..++..+...+...|++++|...++...+.. +.+...+.
T Consensus 165 ~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 165 IKEGEPRKAISDLKAASKLK-------SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHH
Confidence 99999999999999999876 6688899999999999999999999999998753 22334333
Q ss_pred --HHHHHHHccCCHHHHHHHHHHHHHCCCCCCH----hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 036577 293 --SLIHGFCYANDWNEAKCLLIEMMDQGVQPNV----VTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMD 366 (470)
Q Consensus 293 --~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 366 (470)
.+...+.+.|++++|...++++.+.. +.+. ..+..+..++...|++++|...++.+.+..+. +..++..+..
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~ 314 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD-NVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 23667899999999999999998864 2233 23556778999999999999999999987543 7889999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 036577 367 GFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCK 405 (470)
Q Consensus 367 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 405 (470)
.+...|++++|...|+++.+.. +.+...+..+..+...
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 9999999999999999999874 3366777766665543
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=1e-20 Score=184.77 Aligned_cols=335 Identities=9% Similarity=-0.001 Sum_probs=272.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIK 185 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (470)
....|..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|.+.++++++.. +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 45678889999999999999999999999875 6788999999999999999999999999999875 557889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCcc----------------------------------------------------
Q 036577 186 GLCAESRIMEAAALFTKLKAFGCEPNVI---------------------------------------------------- 213 (470)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~---------------------------------------------------- 213 (470)
++...|++++|...|+.+... |+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSLN---GDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHHHcCCHHHHHHHHHHHhcC---CCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 999999999999999644211 1110
Q ss_pred -----------------hHHHHHHHHH--------hcCChHHHHHHHHHHHhcCCCCCcccCCC-------HhhHHHHHH
Q 036577 214 -----------------TYSTLINGLC--------RTGHTIVALNLFEEMANGNGEIGVVCEPN-------TVTYTTIID 261 (470)
Q Consensus 214 -----------------~~~~l~~~~~--------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~ 261 (470)
....+...+. ..|++++|..+++++.... +.+ ..++..+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-------p~~~~~~~~~~~~~~~~g~ 251 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-------TVDDPLRENAALALCYTGI 251 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-------CCcchhhHHHHHHHHHHHH
Confidence 1111111111 1247889999999998765 333 335777778
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHH
Q 036577 262 GLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDE 341 (470)
Q Consensus 262 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 341 (470)
.+...|++++|...++.+... .|+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHH
Confidence 889999999999999999886 4568889999999999999999999999998875 5578889999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 036577 342 ASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLS 421 (470)
Q Consensus 342 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (470)
|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...|+++.+
T Consensus 329 A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 329 AKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999988654 66889999999999999999999999998864 44778899999999999999999999999886
Q ss_pred CCC-----CCCHhHHHHHHHHHHhc----------CCHHHHHHHHHHHHHc
Q 036577 422 KGI-----KPDVVIYNTLFIGLFEI----------HQVERAFKLFDEMRRD 457 (470)
Q Consensus 422 ~~~-----~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~ 457 (470)
... ......+..+...+... |++++|...++++.+.
T Consensus 407 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 457 (537)
T 3fp2_A 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL 457 (537)
T ss_dssp HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh
Confidence 421 11222344556777777 9999999999999873
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.89 E-value=3.3e-18 Score=164.77 Aligned_cols=341 Identities=13% Similarity=0.043 Sum_probs=296.0
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 036577 83 TTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAK----NKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK---- 154 (470)
Q Consensus 83 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~---- 154 (470)
..+++++|+..|+...+.+ ++.++..|...|.. .+++++|+..|++..+.| +...+..|...|..
T Consensus 55 ~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~ 127 (490)
T 2xm6_A 55 TTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGV 127 (490)
T ss_dssp SCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred CCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCC
Confidence 4679999999999998863 67888999999998 999999999999998865 67788889999988
Q ss_pred cCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh----cC
Q 036577 155 MGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCA----ESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCR----TG 226 (470)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g 226 (470)
.+++++|...|++..+.| +...+..|...|.. .+++++|++.|++..+.| +...+..+...|.. .+
T Consensus 128 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 201 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVER 201 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCc
Confidence 889999999999999876 67788889999987 889999999999998864 67788888888888 89
Q ss_pred ChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--
Q 036577 227 HTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCK----EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCY-- 300 (470)
Q Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-- 300 (470)
+.++|.+.|++..+.+ +...+..+...|.. .+++++|.++|++..+.+ +...+..+...|..
T Consensus 202 ~~~~A~~~~~~a~~~~---------~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~ 269 (490)
T 2xm6_A 202 NDAISAQWYRKSATSG---------DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGL 269 (490)
T ss_dssp CHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCC
Confidence 9999999999998754 56778888888886 889999999999998865 56677778888877
Q ss_pred --cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCC-
Q 036577 301 --ANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKN-----GKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTG- 372 (470)
Q Consensus 301 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 372 (470)
.+++++|...|++..+.+ +...+..+...|... +++++|...+++..+.+ +...+..+...|...|
T Consensus 270 ~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~ 343 (490)
T 2xm6_A 270 AGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGS 343 (490)
T ss_dssp TSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCC
T ss_pred CCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCC
Confidence 899999999999998765 456777788888887 89999999999999875 5567788888888766
Q ss_pred --CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cC
Q 036577 373 --RVNRAKELFVSMESNRCMHDVFSYSILINGYCK----NKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFE----IH 442 (470)
Q Consensus 373 --~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g 442 (470)
+.++|.+.|++..+.+ +...+..+...|.. .+++++|+.+|++..+.+ +...+..|...|.. .+
T Consensus 344 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~ 417 (490)
T 2xm6_A 344 EEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVER 417 (490)
T ss_dssp HHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred cccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCC
Confidence 8899999999999875 78899999999999 899999999999999875 57788888888988 89
Q ss_pred CHHHHHHHHHHHHHcCCC
Q 036577 443 QVERAFKLFDEMRRDGVA 460 (470)
Q Consensus 443 ~~~~A~~~~~~m~~~g~~ 460 (470)
+.++|.++|++..+.|..
T Consensus 418 d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 418 DYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp CHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCC
Confidence 999999999999986643
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=1.9e-20 Score=170.58 Aligned_cols=284 Identities=10% Similarity=-0.016 Sum_probs=142.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIK 185 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (470)
++..+..++..+...|++++|+++|+++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+..++..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 33444555555555555555555555555443 3333444445555555555555555555555432 233444555555
Q ss_pred HHHhcC-CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHH
Q 036577 186 GLCAES-RIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLC 264 (470)
Q Consensus 186 ~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 264 (470)
.+...| ++++|.+.|+++.+.. +.+...|..+...+...|++++|++.++++.... +.+...+..+...+.
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~l~~~~~ 170 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-------KGCHLPMLYIGLEYG 170 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-------TTCSHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-------cccHHHHHHHHHHHH
Confidence 555555 5555555555554432 2234444555555555555555555555554443 223334444444445
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHH
Q 036577 265 KEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASR 344 (470)
Q Consensus 265 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 344 (470)
..|++++|.+.++++.. .. +.+...+..+...+...|++++|..
T Consensus 171 ~~~~~~~A~~~~~~al~-----------------------------------~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 214 (330)
T 3hym_B 171 LTNNSKLAERFFSQALS-----------------------------------IA-PEDPFVMHEVGVVAFQNGEWKTAEK 214 (330)
T ss_dssp HTTCHHHHHHHHHHHHT-----------------------------------TC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH-----------------------------------hC-CCChHHHHHHHHHHHHcccHHHHHH
Confidence 55555555555544444 32 2334444444555555555555555
Q ss_pred HHHHHHHcC--------CCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 036577 345 LLDLMIQIG--------VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLY 416 (470)
Q Consensus 345 ~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 416 (470)
.++++.+.. .+.+..++..+..++...|++++|...+++..+.. +.+...|..+..++...|++++|.+.+
T Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 293 (330)
T 3hym_B 215 WFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYF 293 (330)
T ss_dssp HHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHH
Confidence 555444421 01223455555666666666666666666555542 224555666666666666666666666
Q ss_pred HHHHHCCCCC-CHhHHHHHHHHH
Q 036577 417 SEMLSKGIKP-DVVIYNTLFIGL 438 (470)
Q Consensus 417 ~~~~~~~~~p-~~~~~~~l~~~~ 438 (470)
+++.+. .| +...+..+..++
T Consensus 294 ~~al~~--~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 294 HTALGL--RRDDTFSVTMLGHCI 314 (330)
T ss_dssp HTTTTT--CSCCHHHHHHHHHHH
T ss_pred HHHHcc--CCCchHHHHHHHHHH
Confidence 665543 22 344555555544
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=4.3e-20 Score=168.26 Aligned_cols=277 Identities=12% Similarity=0.053 Sum_probs=216.5
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-
Q 036577 78 GEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG- 156 (470)
Q Consensus 78 ~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g- 156 (470)
+..+...|++++|+.+|+.+++..|. +...+..++.++...|++++|..+++++.+.. +.+...+..+...+...|
T Consensus 29 a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 105 (330)
T 3hym_B 29 AERHYYNCDFKMCYKLTSVVMEKDPF--HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGH 105 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT--CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC--ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhh
Confidence 34456789999999999999998887 67788888899999999999999999998875 567789999999999999
Q ss_pred CcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 036577 157 RVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFE 236 (470)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 236 (470)
++++|.+.++++.+.. +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++
T Consensus 106 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 183 (330)
T 3hym_B 106 KNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFS 183 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999874 4567889999999999999999999999998864 3356778889999999999999999999
Q ss_pred HHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHccCCHHHHH
Q 036577 237 EMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDEN--------INPNVVTYNSLIHGFCYANDWNEAK 308 (470)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~~~~~~a~ 308 (470)
++.... +.+...+..+...+...|++++|...++++.... .+....++..+..+|...|++++|.
T Consensus 184 ~al~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 184 QALSIA-------PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHTTC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhC-------CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999876 5677889999999999999999999998887631 1223455666666666666666666
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 036577 309 CLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGF 368 (470)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 368 (470)
..+++..+.. +.+...+..+..++...|++++|...++++.+..+. +...+..+..++
T Consensus 257 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 314 (330)
T 3hym_B 257 DYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHH
T ss_pred HHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHHHH
Confidence 6666666543 334455555666666666666666666665554322 445555555554
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.88 E-value=1.6e-20 Score=174.14 Aligned_cols=309 Identities=11% Similarity=0.012 Sum_probs=184.7
Q ss_pred CccccCChhHHHH-HHHHHHhcCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 036577 80 GDITTITPNEAFC-IFDYMLNMRPSPP--PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156 (470)
Q Consensus 80 ~~~~~~~~~~A~~-~f~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 156 (470)
.+...|++++|+. .|+......+..| +...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3445578888888 8887776655422 34567788888888889999999988888875 567778888888888888
Q ss_pred CcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 036577 157 RVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFE 236 (470)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 236 (470)
++++|...++++++.. +.+..++..+..+|...|++++|.+.++++.... +.+...+..+... .
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~------- 176 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------A------- 176 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC--------------------
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------h-------
Confidence 8888888888888764 4577788888888888888888888888888753 1122222111000 0
Q ss_pred HHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036577 237 EMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINP-NVVTYNSLIHGFCYANDWNEAKCLLIEMM 315 (470)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 315 (470)
.. ..+ ...+..+...+ ..|++++|...++++....... +..++..+...|...|++++|...++++.
T Consensus 177 ---~~-------~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 244 (368)
T 1fch_A 177 ---GG-------AGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244 (368)
T ss_dssp --------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---hh-------hcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 00 000 00111111222 5555566666665555432111 35555556666666666666666666655
Q ss_pred HCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC------
Q 036577 316 DQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRC------ 389 (470)
Q Consensus 316 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------ 389 (470)
+.. +.+...+..+...+...|++++|...++++.+..+. +...+..+..+|.+.|++++|...|+++.+...
T Consensus 245 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 322 (368)
T 1fch_A 245 SVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR 322 (368)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC----
T ss_pred HhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcc
Confidence 543 334556666666666666666666666666655322 455666666666666666666666666554311
Q ss_pred ----CCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 036577 390 ----MHDVFSYSILINGYCKNKEIEGALSLYSEM 419 (470)
Q Consensus 390 ----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (470)
+....+|..+..+|...|++++|..++++.
T Consensus 323 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 323 GEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp --CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred ccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 012567777777777777777777766543
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=6.2e-20 Score=170.08 Aligned_cols=327 Identities=11% Similarity=-0.026 Sum_probs=234.6
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHH-HHHHHHhCCC-CC--CHHHHHHHHHHHHhcCCcch
Q 036577 85 ITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLS-LFKRLNSTGL-FP--DLYTYNILINCFCKMGRVSP 160 (470)
Q Consensus 85 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~m~~~~~-~~--~~~~~~~li~~~~~~g~~~~ 160 (470)
..++.+...|+.+.+.++. ++...|++++|++ .|++...... .| +...+..+...+...|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 82 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRDAE------------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPN 82 (368)
T ss_dssp -------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHHHcCCch------------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHH
Confidence 3455566666666543321 2334588999998 8887655421 11 34568889999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036577 161 GFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240 (470)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 240 (470)
|...++++++.. +.+..++..+..+|...|++++|...|+++.+.. +.+..++..+...+...|++++|++.++++..
T Consensus 83 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (368)
T 1fch_A 83 AVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLR 160 (368)
T ss_dssp HHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999875 5678899999999999999999999999998874 44678899999999999999999999999998
Q ss_pred cCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 036577 241 GNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQ 320 (470)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 320 (470)
.. +.+...+..+... .. .. . ....+..+... ...|++++|...++++.+.. +
T Consensus 161 ~~-------~~~~~~~~~~~~~-------~~-------~~----~-~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~~-p 212 (368)
T 1fch_A 161 YT-------PAYAHLVTPAEEG-------AG-------GA----G-LGPSKRILGSL-LSDSLFLEVKELFLAAVRLD-P 212 (368)
T ss_dssp TS-------TTTGGGCC----------------------------------CTTHHH-HHHHHHHHHHHHHHHHHHHS-T
T ss_pred hC-------cCcHHHHHHHHHH-------hh-------hh----c-ccHHHHHHHHH-hhcccHHHHHHHHHHHHHhC-c
Confidence 76 2232222211111 00 00 0 01112222333 38899999999999998874 3
Q ss_pred C--CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036577 321 P--NVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSI 398 (470)
Q Consensus 321 ~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 398 (470)
. +..++..+...+...|++++|...++++.+..+. +..++..++..+...|++++|...|+++.+.. +.+...+..
T Consensus 213 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~ 290 (368)
T 1fch_A 213 TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYN 290 (368)
T ss_dssp TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 3 5788999999999999999999999999987543 68899999999999999999999999998864 457889999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCC----------CHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036577 399 LINGYCKNKEIEGALSLYSEMLSKGIKP----------DVVIYNTLFIGLFEIHQVERAFKLFDEMR 455 (470)
Q Consensus 399 l~~~~~~~g~~~~A~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (470)
+..+|.+.|++++|...|+++.+..... ...+|..+..++...|++++|..++++..
T Consensus 291 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 291 LGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 9999999999999999999988642211 16789999999999999999999887543
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=1.2e-16 Score=153.85 Aligned_cols=333 Identities=12% Similarity=0.042 Sum_probs=285.6
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCcch
Q 036577 89 EAFCIFDYMLNMRPSPPPVSSFNILFGCLAK----NKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK----MGRVSP 160 (470)
Q Consensus 89 ~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~ 160 (470)
.++..+....+. .++.++..+...|.. .+++++|+..|++..+.| +...+..|...|.. .++.++
T Consensus 25 ~~~~~~~~~a~~----g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 97 (490)
T 2xm6_A 25 VNLEQLKQKAES----GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQ 97 (490)
T ss_dssp CCHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 345556555543 378888889988888 899999999999998865 67788899999998 899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh----cCChHHHH
Q 036577 161 GFVVLGRILRSCFTPDAVTFNSLIKGLCA----ESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCR----TGHTIVAL 232 (470)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~a~ 232 (470)
|.++|++..+.| +...+..|...|.. .+++++|+..|++..+.| +...+..+...|.. .++.++|+
T Consensus 98 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~ 171 (490)
T 2xm6_A 98 AVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAR 171 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999999875 66788889999988 889999999999998865 56778888888887 78999999
Q ss_pred HHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCH
Q 036577 233 NLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCK----EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCY----ANDW 304 (470)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~ 304 (470)
+.|++..+.+ +...+..+...|.. .+++++|.++|++..+.+ +...+..+...|.. .+++
T Consensus 172 ~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~ 239 (490)
T 2xm6_A 172 EWYSKAAEQG---------NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDY 239 (490)
T ss_dssp HHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHHCC---------CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 9999998754 57788889999988 899999999999998875 66778888888886 8899
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcC-----CCHH
Q 036577 305 NEAKCLLIEMMDQGVQPNVVTFNVIMDELCK----NGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLT-----GRVN 375 (470)
Q Consensus 305 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~ 375 (470)
++|...|++..+.+ +...+..+...|.. .++.++|...|++..+.+ +...+..+...|... ++.+
T Consensus 240 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~ 313 (490)
T 2xm6_A 240 TQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNRE 313 (490)
T ss_dssp HHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHH
Confidence 99999999998865 45677778888887 899999999999998764 566777888888877 8999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCCHHHHH
Q 036577 376 RAKELFVSMESNRCMHDVFSYSILINGYCKNK---EIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFE----IHQVERAF 448 (470)
Q Consensus 376 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 448 (470)
+|...|++..+.+ +...+..+...|...| ++++|+++|++..+.| +...+..|...|.. .+++++|.
T Consensus 314 ~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 387 (490)
T 2xm6_A 314 QAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAA 387 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 9999999999876 6678888999998877 8899999999999873 67788889999988 89999999
Q ss_pred HHHHHHHHcC
Q 036577 449 KLFDEMRRDG 458 (470)
Q Consensus 449 ~~~~~m~~~g 458 (470)
++|++..+.|
T Consensus 388 ~~~~~A~~~~ 397 (490)
T 2xm6_A 388 IWMRKAAEQG 397 (490)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhCC
Confidence 9999998876
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=5.4e-20 Score=170.39 Aligned_cols=266 Identities=12% Similarity=-0.045 Sum_probs=198.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhH
Q 036577 177 AVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTY 256 (470)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (470)
...+..+...+.+.|++++|+..|+++.+.. +.+..+|..+...+...|++++|++.|+++.... +.+..++
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~ 136 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-------PNNLKAL 136 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CCCHHHH
Confidence 3446667777777777777777777776653 3356667777777777777777777777777654 4556777
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCC---------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC--CHhH
Q 036577 257 TTIIDGLCKEGFVDKAKELFLKMKDENIN---------PNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQP--NVVT 325 (470)
Q Consensus 257 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~ 325 (470)
..+..+|...|++++|.+.++++...... .....+..+...+...|++++|...++++.+.. +. +...
T Consensus 137 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 215 (365)
T 4eqf_A 137 MALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDL 215 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHH
Confidence 77777777777777777777777653210 012334455778889999999999999998874 33 6788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 036577 326 FNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCK 405 (470)
Q Consensus 326 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 405 (470)
+..+...+...|++++|...++++.+..+. +..+|..++.+|...|++++|...|+++.+.. +.+..+|..+..+|..
T Consensus 216 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 216 QTGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCIN 293 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHH
Confidence 999999999999999999999999987544 78899999999999999999999999988864 4468899999999999
Q ss_pred cCChhHHHHHHHHHHHCCCC-----------CCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 036577 406 NKEIEGALSLYSEMLSKGIK-----------PDVVIYNTLFIGLFEIHQVERAFKLFDE 453 (470)
Q Consensus 406 ~g~~~~A~~~~~~~~~~~~~-----------p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 453 (470)
.|++++|...|+++++.... .+..+|..+..++...|+.+.+.++.++
T Consensus 294 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 294 LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999998864211 1357899999999999999998887655
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=6.8e-20 Score=169.70 Aligned_cols=236 Identities=11% Similarity=-0.025 Sum_probs=162.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIK 185 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (470)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...|+++++.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888889999999999999999988765 5678888999999999999999999999988764 456788888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCC-cch----------HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHh
Q 036577 186 GLCAESRIMEAAALFTKLKAFGCEPN-VIT----------YSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTV 254 (470)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~----------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 254 (470)
+|...|++++|+..|+++.+.. |+ ... +..+...+...|++++|++.++++....+ ...+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~ 214 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNG-----DMIDPD 214 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSC-----SSCCHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCc-----CccCHH
Confidence 9999999999999998887653 22 222 22346666777777777777777776552 011566
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 036577 255 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELC 334 (470)
Q Consensus 255 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 334 (470)
++..+...+...|++++|.+.|+++.+.. +.+..+|..+..+|...|++++|...|+++.+.. +.+...+..+..+|.
T Consensus 215 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 292 (365)
T 4eqf_A 215 LQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCI 292 (365)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHH
Confidence 67777777777777777777777666542 2345666666666666666666666666666553 334555666666666
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 036577 335 KNGKMDEASRLLDLMIQI 352 (470)
Q Consensus 335 ~~g~~~~a~~~~~~~~~~ 352 (470)
+.|++++|...++++.+.
T Consensus 293 ~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 293 NLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHTCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHh
Confidence 666666666666666554
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=6.9e-17 Score=157.17 Aligned_cols=355 Identities=11% Similarity=0.066 Sum_probs=268.8
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCcchHH
Q 036577 84 TITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINC-FCKMGRVSPGF 162 (470)
Q Consensus 84 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~a~ 162 (470)
.|++++|..+|+.+++..|. +...|..++..+.+.|++++|..+|+++++. .|+...|...+.. ....|+.+.|.
T Consensus 25 ~~~~~~a~~~~e~al~~~P~--~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~ 100 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQFPS--SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSYK 100 (530)
T ss_dssp SSCHHHHHHHHHHHHTTCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHH
T ss_pred hCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhHH
Confidence 57899999999999998887 8999999999999999999999999999987 4688888777753 34568888776
Q ss_pred H----HHHHHHh-CCCC-CCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHH--
Q 036577 163 V----VLGRILR-SCFT-PDAVTFNSLIKGLCA---------ESRIMEAAALFTKLKAFGCEPNV---ITYSTLINGL-- 222 (470)
Q Consensus 163 ~----~~~~~~~-~~~~-~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~g~~~~~---~~~~~l~~~~-- 222 (470)
+ +|++.+. .|.. ++...|...+....+ .|+++.|..+|++..+. |.. ..|.......
T Consensus 101 ~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~~~~~~~~~~~e~~ 177 (530)
T 2ooe_A 101 EKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINIEQLWRDYNKYEEG 177 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhHHHHHHHHHHHHHh
Confidence 6 6666655 3433 356778887777655 67888999999888763 221 2222111100
Q ss_pred -----------HhcCChH------------------------------------------------------------HH
Q 036577 223 -----------CRTGHTI------------------------------------------------------------VA 231 (470)
Q Consensus 223 -----------~~~g~~~------------------------------------------------------------~a 231 (470)
.+.+++. .+
T Consensus 178 ~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a 257 (530)
T 2ooe_A 178 INIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRV 257 (530)
T ss_dssp HCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHH
T ss_pred hchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHH
Confidence 0011112 33
Q ss_pred HHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHh-------CCCHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036577 232 LNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCK-------EGFVD-------KAKELFLKMKDENINPNVVTYNSLIHG 297 (470)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~ 297 (470)
..+|+++.... +.+...|..++..+.+ .|+++ +|..+|++....-.+.+...|..++..
T Consensus 258 ~~~y~~al~~~-------p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~ 330 (530)
T 2ooe_A 258 MFAYEQCLLVL-------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADY 330 (530)
T ss_dssp HHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHhC-------CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 44555554443 4567778888887775 79987 899999999863234578899999999
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCC-H-hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH-HHcCCCH
Q 036577 298 FCYANDWNEAKCLLIEMMDQGVQPN-V-VTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDG-FCLTGRV 374 (470)
Q Consensus 298 ~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~ 374 (470)
+.+.|++++|..+|+++.+. .|+ . ..|...+..+.+.|++++|..+|++..+.... +...|...+.. +...|+.
T Consensus 331 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~ 407 (530)
T 2ooe_A 331 EESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDK 407 (530)
T ss_dssp HHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCH
T ss_pred HHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCCh
Confidence 99999999999999999986 443 3 57888888899999999999999999986432 33333333222 3368999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC--HhHHHHHHHHHHhcCCHHHHHHHH
Q 036577 375 NRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGI-KPD--VVIYNTLFIGLFEIHQVERAFKLF 451 (470)
Q Consensus 375 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~--~~~~~~l~~~~~~~g~~~~A~~~~ 451 (470)
++|..+|+..++.. +.+...|..++..+.+.|+.++|..+|++.+..+. .|+ ...|...+......|+.+.+.++.
T Consensus 408 ~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~ 486 (530)
T 2ooe_A 408 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 486 (530)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999988763 44789999999999999999999999999998642 332 448888888888999999999999
Q ss_pred HHHHH
Q 036577 452 DEMRR 456 (470)
Q Consensus 452 ~~m~~ 456 (470)
+++.+
T Consensus 487 ~r~~~ 491 (530)
T 2ooe_A 487 KRRFT 491 (530)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99986
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.83 E-value=1.8e-18 Score=157.28 Aligned_cols=263 Identities=10% Similarity=-0.006 Sum_probs=177.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHH
Q 036577 181 NSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTII 260 (470)
Q Consensus 181 ~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 260 (470)
..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|.+.++++.... +.+..++..+.
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~la 96 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-------PKDIAVHAALA 96 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------cCCHHHHHHHH
Confidence 334444444555555555555544432 2233444444455555555555555555554443 33444455555
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHH-------------H-HH-HHHccCCHHHHHHHHHHHHHCCCCCCHhH
Q 036577 261 DGLCKEGFVDKAKELFLKMKDENINPNVVTYNS-------------L-IH-GFCYANDWNEAKCLLIEMMDQGVQPNVVT 325 (470)
Q Consensus 261 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------------l-i~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 325 (470)
..+...|++++|.+.++++..... .+...+.. + .. .+...|++++|...++++.+.. +.+...
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 174 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQL 174 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHH
Confidence 555555555555555555544311 11111111 1 22 3677888999999999988765 456788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 036577 326 FNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCK 405 (470)
Q Consensus 326 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 405 (470)
+..+...+...|++++|...++++.+.... +...+..++..+...|++++|...++++.+.. +.+...+..+..+|..
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 888899999999999999999999887543 67888899999999999999999999988764 4478889999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCC-----------CHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036577 406 NKEIEGALSLYSEMLSKGIKP-----------DVVIYNTLFIGLFEIHQVERAFKLFDEMR 455 (470)
Q Consensus 406 ~g~~~~A~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (470)
.|++++|.+.++++.+..... +...|..+..++...|++++|..++++..
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999999988653221 36688889999999999999999887654
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=1.9e-17 Score=158.84 Aligned_cols=351 Identities=13% Similarity=-0.022 Sum_probs=221.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC-----
Q 036577 105 PPVSSFNILFGCLAKNKHYDTVLSLFKRLNST--------GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS----- 171 (470)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----- 171 (470)
.....||.+..++...|++++|++.|++..+. ..+....+|..+..+|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 44667888888888888888888888876442 11334567888888888888888888888877642
Q ss_pred C-C-CCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCCCcchHHHHHHH---HHhcCChHHHHHHHHHHHhcCCC
Q 036577 172 C-F-TPDAVTFNSLIKGLCAE--SRIMEAAALFTKLKAFGCEPNVITYSTLING---LCRTGHTIVALNLFEEMANGNGE 244 (470)
Q Consensus 172 ~-~-~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~~ 244 (470)
+ . .....++..+..++... +++++|+..|++..+.. |-+...+..+..+ +...++.++|++.+++.....
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-- 205 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-- 205 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--
Confidence 1 1 12345566555555543 46888888888887753 2234444444443 344577778888888887765
Q ss_pred CCcccCCCHhhHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 036577 245 IGVVCEPNTVTYTTIIDGLCK----EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQ 320 (470)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 320 (470)
+.+...+..+...+.. .|++++|.+.+++..... +.+..++..+...|...|++++|...+.+..+.. +
T Consensus 206 -----p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p 278 (472)
T 4g1t_A 206 -----PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-P 278 (472)
T ss_dssp -----SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred -----CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-C
Confidence 4556666666555544 456778888888877653 3467778888888888888888888888887764 4
Q ss_pred CCHhHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHH
Q 036577 321 PNVVTFNVIMDELCKN-------------------GKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELF 381 (470)
Q Consensus 321 ~~~~~~~~l~~~~~~~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 381 (470)
.+..++..+..+|... +..++|...++...+.++. +...+..+...+...|++++|...|
T Consensus 279 ~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~ 357 (472)
T 4g1t_A 279 NNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYF 357 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHH
Confidence 4556666666555332 2356677777777776543 5567778888888888888888888
Q ss_pred HHHHHCCCCCCH--HHHHHHHH-HHHHcCChhHHHHHHHHHHHCCC-----------------------CCCHhHHHHHH
Q 036577 382 VSMESNRCMHDV--FSYSILIN-GYCKNKEIEGALSLYSEMLSKGI-----------------------KPDVVIYNTLF 435 (470)
Q Consensus 382 ~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~-----------------------~p~~~~~~~l~ 435 (470)
++.++....+.. ..+..+.. .+...|+.++|+..|++.++... +.+..+|..|.
T Consensus 358 ~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG 437 (472)
T 4g1t_A 358 QKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLA 437 (472)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHH
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 888876433321 12222322 23467888888888877765321 23466899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC-CCCChhhh
Q 036577 436 IGLFEIHQVERAFKLFDEMRRDG-VAADTWTY 466 (470)
Q Consensus 436 ~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~ 466 (470)
..+...|++++|++.|++.++.| ..|+..++
T Consensus 438 ~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 438 FLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHCC----------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 99999999999999999999754 45665544
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.83 E-value=2.2e-18 Score=156.71 Aligned_cols=234 Identities=11% Similarity=-0.079 Sum_probs=144.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIK 185 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (470)
+...|..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|.+.++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 34557778888899999999999999988764 5677888889999999999999999999988864 557788888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHH--------------HH-HHHhcCChHHHHHHHHHHHhcCCCCCcccC
Q 036577 186 GLCAESRIMEAAALFTKLKAFGCEPNVITYSTL--------------IN-GLCRTGHTIVALNLFEEMANGNGEIGVVCE 250 (470)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l--------------~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 250 (470)
.|...|++++|.+.++++.+.. +.+...+..+ .. .+...|++++|.+.++++.... +
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~ 169 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-------P 169 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-------T
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-------C
Confidence 9999999999999999988753 2233333333 11 2444555555555555555543 3
Q ss_pred CCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 036577 251 PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIM 330 (470)
Q Consensus 251 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 330 (470)
.+...+..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 170 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 247 (327)
T 3cv0_A 170 NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMA 247 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 344555555555555555555555555554432 1234444444444444455555544444444432 22333444444
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 036577 331 DELCKNGKMDEASRLLDLMIQ 351 (470)
Q Consensus 331 ~~~~~~g~~~~a~~~~~~~~~ 351 (470)
.++...|++++|...++++.+
T Consensus 248 ~~~~~~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 248 VSYSNMSQYDLAAKQLVRAIY 268 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 444444444444444444443
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=1.9e-19 Score=163.88 Aligned_cols=282 Identities=12% Similarity=0.116 Sum_probs=136.3
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHH
Q 036577 83 TTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGF 162 (470)
Q Consensus 83 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 162 (470)
..|++++|.++++++ +.+.+|..++.++.+.|++++|++.|.+ .+|..+|..++..+...|++++|.
T Consensus 15 ~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHH
Confidence 346799999999998 2345999999999999999999999965 357779999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 036577 163 VVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242 (470)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 242 (470)
..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|..+|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 988877764 4567889999999999999999998884 267789999999999999999999999966
Q ss_pred CCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 036577 243 GEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPN 322 (470)
Q Consensus 243 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 322 (470)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ...
T Consensus 149 -----------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ 206 (449)
T 1b89_A 149 -----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVH 206 (449)
T ss_dssp -----------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTC
T ss_pred -----------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhC
Confidence 26899999999999999999999988 27899999999999999999996655442 234
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcC--CCHHHHHHHHHHHHHCCCCC------CHH
Q 036577 323 VVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLT--GRVNRAKELFVSMESNRCMH------DVF 394 (470)
Q Consensus 323 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~------~~~ 394 (470)
+.....++..|.+.|++++|..+++...... +-....|+.+...|++- +++.+..+.|.. +.+++| +..
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~ 283 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAH 283 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTT
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHH
Confidence 4445678899999999999999999998776 44677888888887755 344455554432 122222 566
Q ss_pred HHHHHHHHHHHcCChhHHHHH
Q 036577 395 SYSILINGYCKNKEIEGALSL 415 (470)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~ 415 (470)
.|..+.-.|...++++.|...
T Consensus 284 ~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 284 LWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp CHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhhchHHHHHHH
Confidence 789999999999999998774
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=8.9e-18 Score=149.55 Aligned_cols=249 Identities=15% Similarity=0.140 Sum_probs=137.8
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 036577 84 TITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFV 163 (470)
Q Consensus 84 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 163 (470)
.|+++.|+..++.+....|. ........+.++|...|+++.|+..++. . -+|+..++..+...+...|+.++|++
T Consensus 12 ~g~y~~ai~~~~~~~~~~p~-~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSSPE-RDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp TTCHHHHHHHHHHSCCCSHH-HHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCch-hhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 45666666666655443332 1123444556666667776666665433 1 24455566666666666666666666
Q ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 036577 164 VLGRILRSCF-TPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242 (470)
Q Consensus 164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 242 (470)
.+++++..+. +.+...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++++....
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 6666665543 33445555555666666666666666655 2455566666666666666666666666666543
Q ss_pred CCCCcccCCCHhh--HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 036577 243 GEIGVVCEPNTVT--YTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQ 320 (470)
Q Consensus 243 ~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 320 (470)
+.+... ...++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...+++..+.. +
T Consensus 161 -------p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p 231 (291)
T 3mkr_A 161 -------EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-S 231 (291)
T ss_dssp -------TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred -------cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 111111 111223333345566666666665554 23455555556666666666666666666655543 3
Q ss_pred CCHhHHHHHHHHHHHcCCHHH-HHHHHHHHHHc
Q 036577 321 PNVVTFNVIMDELCKNGKMDE-ASRLLDLMIQI 352 (470)
Q Consensus 321 ~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~ 352 (470)
.+..++..++..+...|+.++ +.++++++.+.
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 345555555555555555543 34555555554
No 29
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=2.3e-16 Score=153.51 Aligned_cols=349 Identities=12% Similarity=0.054 Sum_probs=254.9
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Q 036577 94 FDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCF 173 (470)
Q Consensus 94 f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 173 (470)
|+..++..|. +..+|..++.. .+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..+|+++++..
T Consensus 2 le~al~~~P~--~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~- 76 (530)
T 2ooe_A 2 AEKKLEENPY--DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV- 76 (530)
T ss_dssp HHHHHHHCTT--CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC-
T ss_pred hhhHhhhCCC--CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-
Confidence 6677777776 89999999984 78999999999999999874 6678899999999999999999999999999873
Q ss_pred CCCHHHHHHHHHHH-HhcCCHHHHHH----HHHHHHhc-CCCC-CcchHHHHHHHHHh---------cCChHHHHHHHHH
Q 036577 174 TPDAVTFNSLIKGL-CAESRIMEAAA----LFTKLKAF-GCEP-NVITYSTLINGLCR---------TGHTIVALNLFEE 237 (470)
Q Consensus 174 ~~~~~~~~~l~~~~-~~~g~~~~a~~----~~~~~~~~-g~~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~ 237 (470)
|+...|..++... ...|+.+.|.+ +|++.... |..| +...|...+....+ .|+++.|..+|++
T Consensus 77 -p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~ 155 (530)
T 2ooe_A 77 -LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 155 (530)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH
Confidence 6888888777543 35677776655 77776543 5443 45567777766554 6889999999999
Q ss_pred HHhcCCCCCcccCCCHhhHH------------------------------------------------------------
Q 036577 238 MANGNGEIGVVCEPNTVTYT------------------------------------------------------------ 257 (470)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 257 (470)
...... ......|.
T Consensus 156 al~~P~------~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 229 (530)
T 2ooe_A 156 GCVNPM------INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQ 229 (530)
T ss_dssp HTTSCC------TTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHH
T ss_pred HHhchh------hhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHH
Confidence 876321 11112222
Q ss_pred -----HHHHHHHhC----CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-------cCCHH-------HHHHH
Q 036577 258 -----TIIDGLCKE----GFV----DKAKELFLKMKDENINPNVVTYNSLIHGFCY-------ANDWN-------EAKCL 310 (470)
Q Consensus 258 -----~l~~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~~-------~a~~~ 310 (470)
..+...... ++. ..+..+|+++... .+.+...|..++..+.+ .|+++ +|..+
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~ 308 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence 111111110 111 2344455555543 13356667777776664 68876 89999
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 036577 311 LIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPN-AFVYNTLMDGFCLTGRVNRAKELFVSMESNRC 389 (470)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 389 (470)
+++..+.-.+.+...|..++..+.+.|++++|..+|+++++..+. + ...|..++..+.+.|++++|..+|++..+..
T Consensus 309 ~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~- 386 (530)
T 2ooe_A 309 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA- 386 (530)
T ss_dssp HHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-
Confidence 999886323556788899999999999999999999999986432 3 3578888888889999999999999998763
Q ss_pred CCCHHHHHHHHHH-HHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 036577 390 MHDVFSYSILING-YCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDG 458 (470)
Q Consensus 390 ~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 458 (470)
+.+...|...+.. +...|++++|..+|++.++.. +.+...|..++..+.+.|+.++|..+|++....+
T Consensus 387 ~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 387 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 2233334333322 346899999999999998753 2257889999999999999999999999999853
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=1.3e-17 Score=148.48 Aligned_cols=274 Identities=10% Similarity=-0.003 Sum_probs=191.3
Q ss_pred HHHHhcCCcchHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 036577 150 NCFCKMGRVSPGFVVLGRILRSCFTPD--AVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGH 227 (470)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 227 (470)
.-....|++..|+...+..... .|+ ......+.++|...|+++.|+..++.. -+|+..++..+...+...|+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCc
Confidence 4455678888888877765443 333 235556778888888888888766441 34566777778888888888
Q ss_pred hHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 036577 228 TIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEA 307 (470)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 307 (470)
.++|++.++++...+. .+.+...+..+..++...|++++|++.+++ +.+...+..++..+.+.|++++|
T Consensus 81 ~~~A~~~l~~ll~~~~-----~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A 149 (291)
T 3mkr_A 81 RDAIVAELDREMSRSV-----DVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLA 149 (291)
T ss_dssp HHHHHHHHHHHHHSCC-----CCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccc-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHH
Confidence 8888888888776531 134566677777888888888888888876 35777888888888888888888
Q ss_pred HHHHHHHHHCCCCCCHhHH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHH
Q 036577 308 KCLLIEMMDQGVQPNVVTF---NVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSM 384 (470)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 384 (470)
.+.++++.+.. |+.... ...+..+...|++++|..+|+++.+..+ .+...++.+..++.+.|++++|...|+++
T Consensus 150 ~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 150 RKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888763 442211 1222333445788888888888888743 47788888888888888888888888887
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCChhH-HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 036577 385 ESNRCMHDVFSYSILINGYCKNKEIEG-ALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFK 449 (470)
Q Consensus 385 ~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 449 (470)
.+.. +.+..++..++..+...|+.++ +.++++++++. .|+.... .+...+.+.++++..
T Consensus 227 l~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~~---~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 227 LDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPFI---KEYRAKENDFDRLVL 286 (291)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHH---HHHHHHHHHHHHHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChHH---HHHHHHHHHHHHHHH
Confidence 7764 4477788888888888888765 56788888755 4443322 233444444554443
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=1.1e-16 Score=153.49 Aligned_cols=344 Identities=11% Similarity=-0.044 Sum_probs=236.1
Q ss_pred CCCCccccCChhHHHHHHHHHHhc-------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----C--CCCCH
Q 036577 77 SGEGDITTITPNEAFCIFDYMLNM-------RPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNST-----G--LFPDL 142 (470)
Q Consensus 77 ~~~~~~~~~~~~~A~~~f~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-----~--~~~~~ 142 (470)
.|..+...|++++|++.|+++++. ...+....+|+.+..+|...|++++|...+++..+. + .....
T Consensus 57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~ 136 (472)
T 4g1t_A 57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESP 136 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhH
Confidence 344556678999999999988753 112236788999999999999999999999887543 1 12245
Q ss_pred HHHHHHHHHHHhcC--CcchHHHHHHHHHhCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHhcCCCCCcchHHH
Q 036577 143 YTYNILINCFCKMG--RVSPGFVVLGRILRSCFTPDAVTFNSLIKG---LCAESRIMEAAALFTKLKAFGCEPNVITYST 217 (470)
Q Consensus 143 ~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 217 (470)
.++..+..++...| ++++|.+.|++.++.. +.+...+..+..+ +...++.++|++.+++..+.. +.+...+..
T Consensus 137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~ 214 (472)
T 4g1t_A 137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVL 214 (472)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHH
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHH
Confidence 67777766666654 6899999999999864 3455666655555 345678889999999988763 234555655
Q ss_pred HHHHHHh----cCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 036577 218 LINGLCR----TGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNS 293 (470)
Q Consensus 218 l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 293 (470)
+...+.. .|++++|.+.+++..... +.+..++..+...|...|++++|...+++..+.. +.+..++..
T Consensus 215 l~~~~~~~~~~~~~~~~a~~~~~~al~~~-------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 286 (472)
T 4g1t_A 215 LALKLHKMREEGEEEGEGEKLVEEALEKA-------PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHCC------CHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhC-------ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence 5555544 467889999999998876 6678889999999999999999999999998763 335666766
Q ss_pred HHHHHHcc-------------------CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 036577 294 LIHGFCYA-------------------NDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGV 354 (470)
Q Consensus 294 li~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 354 (470)
+..+|... +.++.|...+++..+.. +.+...+..+...+...|++++|...|++..+...
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 66655322 23567888888877764 45567788899999999999999999999998755
Q ss_pred CCCHh--HHHHHHH-HHHcCCCHHHHHHHHHHHHHCC-----------------------CCCCHHHHHHHHHHHHHcCC
Q 036577 355 RPNAF--VYNTLMD-GFCLTGRVNRAKELFVSMESNR-----------------------CMHDVFSYSILINGYCKNKE 408 (470)
Q Consensus 355 ~~~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~g~ 408 (470)
.+... .+..+.. .....|+.++|+..|++.++.. -+.+..+|..+..+|...|+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~ 445 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEK 445 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 43321 2333333 2357899999999888776532 13366789999999999999
Q ss_pred hhHHHHHHHHHHHCC-CCCCHhHH
Q 036577 409 IEGALSLYSEMLSKG-IKPDVVIY 431 (470)
Q Consensus 409 ~~~A~~~~~~~~~~~-~~p~~~~~ 431 (470)
+++|++.|++.++.+ ..|+...|
T Consensus 446 ~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 446 MQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp CC----------------------
T ss_pred HHHHHHHHHHHHhcCCCCCcHhhc
Confidence 999999999999764 23444433
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=1.5e-18 Score=158.00 Aligned_cols=282 Identities=12% Similarity=0.100 Sum_probs=138.0
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036577 119 KNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAA 198 (470)
Q Consensus 119 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 198 (470)
+.|++++|.+.++++. +..+|..++.++.+.|++++|++.|.+ .+|..+|..++..+...|++++|++
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5688999999999883 235999999999999999999999965 3577799999999999999999999
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHH
Q 036577 199 LFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLK 278 (470)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 278 (470)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|...|..
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~ 147 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------------GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 147 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------------CC----------------CTTTHHHHHHH
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88877764 4567889999999999999999887773 35667999999999999999999999997
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 036577 279 MKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNA 358 (470)
Q Consensus 279 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 358 (470)
+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ..++
T Consensus 148 a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~a 207 (449)
T 1b89_A 148 V---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHA 207 (449)
T ss_dssp T---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCH
T ss_pred h---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCH
Confidence 7 36999999999999999999999988 27899999999999999999996555442 2344
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--CChhHHHHHHHHHHHCCCCC------CHhH
Q 036577 359 FVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKN--KEIEGALSLYSEMLSKGIKP------DVVI 430 (470)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~p------~~~~ 430 (470)
.-...++..|.+.|.+++|..+++...... +-....|+.+..+|++- ++..+.++.|..-+ +++| +...
T Consensus 208 d~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~~~~~ 284 (449)
T 1b89_A 208 DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHL 284 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHHTTTC
T ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHHHHHH
Confidence 446678999999999999999999988765 55788899998888874 34555555544222 3333 4678
Q ss_pred HHHHHHHHHhcCCHHHHHHH
Q 036577 431 YNTLFIGLFEIHQVERAFKL 450 (470)
Q Consensus 431 ~~~l~~~~~~~g~~~~A~~~ 450 (470)
|..+...|...++++.|...
T Consensus 285 w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhchHHHHHHH
Confidence 99999999999999988763
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=170.83 Aligned_cols=138 Identities=12% Similarity=0.103 Sum_probs=119.0
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 036577 320 QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQ---IGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSY 396 (470)
Q Consensus 320 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 396 (470)
..-..+|+++|.+|++.|++++|..+|.+|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 33457899999999999999999999988764 588999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCh-hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 036577 397 SILINGYCKNKEI-EGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAAD 462 (470)
Q Consensus 397 ~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 462 (470)
+++|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.++.+. .+++.++++ +.++.|+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLP 265 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCC
Confidence 9999999999984 78999999999999999999999998766554 444444444 4456554
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.75 E-value=6.4e-16 Score=135.18 Aligned_cols=232 Identities=12% Similarity=0.015 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhH
Q 036577 177 AVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTY 256 (470)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (470)
...+..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|++.++++....+......+....++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4677888889999999999999999998876 67888999999999999999999999998875421000000015788
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc
Q 036577 257 TTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKN 336 (470)
Q Consensus 257 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 336 (470)
..+...+...|++++|.+.|+++... .|+. ..+...|++++|...++++.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 89999999999999999999998875 3443 34566788889999998888763 34556777888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 036577 337 GKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLY 416 (470)
Q Consensus 337 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 416 (470)
|++++|...++++.+.... +...+..+...+...|++++|...++...+.. +.+...|..+..++...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 8999999888888887544 67788888888888888888888888887764 446778888888888888888888888
Q ss_pred HHHHHC
Q 036577 417 SEMLSK 422 (470)
Q Consensus 417 ~~~~~~ 422 (470)
++..+.
T Consensus 231 ~~a~~~ 236 (258)
T 3uq3_A 231 DAARTK 236 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887754
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=2.6e-18 Score=168.79 Aligned_cols=137 Identities=10% Similarity=0.121 Sum_probs=117.8
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHH---CCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHH
Q 036577 286 PNVVTYNSLIHGFCYANDWNEAKCLLIEMMD---QGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYN 362 (470)
Q Consensus 286 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 362 (470)
.-..+|+++|++|++.|++++|.++|.+|.+ .|..||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3457899999999999999999999988764 5789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 036577 363 TLMDGFCLTGRV-NRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD 427 (470)
Q Consensus 363 ~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 427 (470)
++|.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+. ..++..+++ ..++.|+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLP 265 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCC
Confidence 999999999984 78999999999999999999999998766553 444444444 3345544
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=7.7e-16 Score=134.66 Aligned_cols=226 Identities=10% Similarity=0.015 Sum_probs=151.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCC--CCC----HHHH
Q 036577 107 VSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCF--TPD----AVTF 180 (470)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~ 180 (470)
...|..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|.+.++++.+... .++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567777777888888888888888877765 6667777777778888888888877777766321 111 4667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHH
Q 036577 181 NSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTII 260 (470)
Q Consensus 181 ~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 260 (470)
..+...|...|++++|...|++..... |+ ...+...|++++|.+.++++.... +.+...+..+.
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~ 146 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVN-------PEKAEEARLEG 146 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcC-------cchHHHHHHHH
Confidence 777777777777777777777777642 33 234555667777777777776654 44556666777
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHH
Q 036577 261 DGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMD 340 (470)
Q Consensus 261 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 340 (470)
..+...|++++|...++++.... +.+...+..+..+|...|++++|...+++..+.. +.+...+..+..++...|+++
T Consensus 147 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~ 224 (258)
T 3uq3_A 147 KEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYA 224 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHH
Confidence 77777777777777777766543 2355666666666666677777777766666553 334556666666666666666
Q ss_pred HHHHHHHHHHHc
Q 036577 341 EASRLLDLMIQI 352 (470)
Q Consensus 341 ~a~~~~~~~~~~ 352 (470)
+|...++.+.+.
T Consensus 225 ~A~~~~~~a~~~ 236 (258)
T 3uq3_A 225 SALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 666666666554
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.73 E-value=7.1e-16 Score=131.17 Aligned_cols=201 Identities=15% Similarity=0.045 Sum_probs=165.5
Q ss_pred CCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 036577 250 EPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVI 329 (470)
Q Consensus 250 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 329 (470)
+++...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..+++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 5677889999999999999999999999998874 4578899999999999999999999999999875 5577889999
Q ss_pred HHHHHHc-----------CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036577 330 MDELCKN-----------GKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSI 398 (470)
Q Consensus 330 ~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 398 (470)
..++... |++++|...+++.++..+. +...+..+..++...|++++|+..|++.++.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 9999999 9999999999999998654 77889999999999999999999999998876 68899999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 399 LINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 399 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
+..+|...|++++|+..|+++++... .+...+..+...+...|++++|.+.+++...
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 99999999999999999999997643 2667888999999999999999999987653
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.72 E-value=1e-15 Score=130.21 Aligned_cols=198 Identities=15% Similarity=0.034 Sum_probs=111.6
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHH
Q 036577 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVV 289 (470)
Q Consensus 210 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 289 (470)
++...+..+...+.+.|++++|+..|++..... +.+...+..+..++.+.|++++|...+++..+.. +.+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~ 74 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-------PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLG 74 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHH
Confidence 344455555555555555555555555555443 3445555555555555555555555555555432 22444
Q ss_pred HHHHHHHHHHcc-----------CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 036577 290 TYNSLIHGFCYA-----------NDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNA 358 (470)
Q Consensus 290 ~~~~li~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 358 (470)
.+..+..++... |++++|+..+++..+.. +.+...+..+..++...|++++|+..++++++.. .+.
T Consensus 75 a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~ 151 (217)
T 2pl2_A 75 GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTP 151 (217)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH
T ss_pred HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cch
Confidence 555555555555 77777777777766653 3455666666777777777777777777777665 466
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 036577 359 FVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEM 419 (470)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (470)
..+..+..++...|++++|...|++..+.. +.+...+..+..++...|++++|+..+++.
T Consensus 152 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 152 EIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 667777777777777777777777766653 336666677777777777777777776654
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.72 E-value=3.2e-15 Score=132.01 Aligned_cols=238 Identities=9% Similarity=0.018 Sum_probs=134.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC--CHHHH
Q 036577 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINP--NVVTY 291 (470)
Q Consensus 214 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~ 291 (470)
.+......+...|++++|+..|+++.+.. +.+...+..+..++...|++++|.+.++++......+ ....|
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 77 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-------YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADF 77 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-------CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHH
Confidence 34444555556666666666666665544 3344455566666666666666666666665532111 12235
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcC
Q 036577 292 NSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLT 371 (470)
Q Consensus 292 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 371 (470)
..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...+++..+..+. +...+..+...+...
T Consensus 78 ~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~ 155 (272)
T 3u4t_A 78 EYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYN 155 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHH
Confidence 556666666666666666666665543 334455666666666666666666666666655322 455555555223334
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHCC-CCCC------HhHHHHHHHHHHhc
Q 036577 372 GRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKE---IEGALSLYSEMLSKG-IKPD------VVIYNTLFIGLFEI 441 (470)
Q Consensus 372 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~ 441 (470)
+++++|...|+++.+.. +.+...+..+..++...|+ +++|...++++.+.. -.|+ ...|..+...+...
T Consensus 156 ~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 156 KEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc
Confidence 46666666666666543 2345566666666666666 666666666665431 1122 13555566666667
Q ss_pred CCHHHHHHHHHHHHHcCCCCCh
Q 036577 442 HQVERAFKLFDEMRRDGVAADT 463 (470)
Q Consensus 442 g~~~~A~~~~~~m~~~g~~p~~ 463 (470)
|++++|.+.++++.+ +.|+.
T Consensus 235 ~~~~~A~~~~~~al~--~~p~~ 254 (272)
T 3u4t_A 235 RDKVKADAAWKNILA--LDPTN 254 (272)
T ss_dssp TCHHHHHHHHHHHHH--HCTTC
T ss_pred CCHHHHHHHHHHHHh--cCccH
Confidence 777777777776665 34443
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.71 E-value=8.2e-16 Score=136.00 Aligned_cols=252 Identities=10% Similarity=-0.062 Sum_probs=182.6
Q ss_pred CCccccCChhHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 036577 79 EGDITTITPNEAFCIFDYMLNMRPS--PPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156 (470)
Q Consensus 79 ~~~~~~~~~~~A~~~f~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 156 (470)
......|++++|+..|+.+++..+. +.+..+|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|
T Consensus 13 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 13 VPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAG 91 (275)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTT
T ss_pred eccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcc
Confidence 3445668899999999999987542 1257788999999999999999999999998875 557888999999999999
Q ss_pred CcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 036577 157 RVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFE 236 (470)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 236 (470)
++++|...++++++.. +.+..++..+..+|...|++++|...|+++.+.. |+.......+..+...|++++|...++
T Consensus 92 ~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp CHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999999998864 4467888889999999999999999999988753 555555555555677788999999998
Q ss_pred HHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 036577 237 EMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENIN---PNVVTYNSLIHGFCYANDWNEAKCLLIE 313 (470)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ 313 (470)
+..... +++...+ .++..+...++.++|.+.++........ .+...+..+...|.+.|++++|...|++
T Consensus 169 ~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 240 (275)
T 1xnf_A 169 QHFEKS-------DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKL 240 (275)
T ss_dssp HHHHHS-------CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhcC-------CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 877765 3444444 3666777778888888888877654211 0145666677777777777777777777
Q ss_pred HHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 036577 314 MMDQGVQPNVVTFNVIMDELCKNGKMDEASRLL 346 (470)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 346 (470)
..+.. |+. +.....++...|++++|+..+
T Consensus 241 al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 241 AVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 76653 221 222244555666666665554
No 41
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.71 E-value=3e-14 Score=144.73 Aligned_cols=313 Identities=14% Similarity=0.112 Sum_probs=245.2
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 036577 78 GEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157 (470)
Q Consensus 78 ~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 157 (470)
+..+...|.+++|..+|++... ...+.+.++. ..+++++|.++.++. .+..+|..+..++.+.|+
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~------~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV------NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC------HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCC
Confidence 4455677889999999998731 3334444443 668899999998865 346789999999999999
Q ss_pred cchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 036577 158 VSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEE 237 (470)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 237 (470)
+++|.+.|.+. .|...|..++.++.+.|++++|.+.|....+.. ++....+.++.+|++.+++++...+
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f--- 1189 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF--- 1189 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH---
Confidence 99999999663 477888889999999999999999999887754 4444455688899999888854333
Q ss_pred HHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 036577 238 MANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ 317 (470)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (470)
.. .++...|..+...|...|++++|...|..+ ..|..+..+|.+.|++++|.+.+.+.
T Consensus 1190 -I~---------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--- 1247 (1630)
T 1xi4_A 1190 -IN---------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--- 1247 (1630)
T ss_pred -Hh---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh---
Confidence 21 345667778999999999999999999875 37899999999999999999999876
Q ss_pred CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 036577 318 GVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYS 397 (470)
Q Consensus 318 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 397 (470)
.+..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++...... +-....|+
T Consensus 1248 ---~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmft 1318 (1630)
T 1xi4_A 1248 ---NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFT 1318 (1630)
T ss_pred ---CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHH
Confidence 36688999999999999999988876643 3366777899999999999999999998887665 44666777
Q ss_pred HHHHHHHHc--CChhHHHHHHHHHHHCCCCC------CHhHHHHHHHHHHhcCCHHHHHH
Q 036577 398 ILINGYCKN--KEIEGALSLYSEMLSKGIKP------DVVIYNTLFIGLFEIHQVERAFK 449 (470)
Q Consensus 398 ~l~~~~~~~--g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~ 449 (470)
-+..+|++. ++..+++++|..-. +++| +...|..++..|.+.|+++.|..
T Consensus 1319 ELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1319 ELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 787777764 45556666665443 2332 56789999999999999999884
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.71 E-value=2e-15 Score=143.17 Aligned_cols=345 Identities=10% Similarity=-0.026 Sum_probs=159.7
Q ss_pred CCCCccccCCh---hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 036577 77 SGEGDITTITP---NEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNK-----HYDTVLSLFKRLNSTGLFPDLYTYNIL 148 (470)
Q Consensus 77 ~~~~~~~~~~~---~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~m~~~~~~~~~~~~~~l 148 (470)
.|..+...|+. ++|+..|+...+. ++.++..+...+...+ ++++|+..|++..+.|. + ..+..|
T Consensus 41 Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~-~--~A~~~L 112 (452)
T 3e4b_A 41 LADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE-G--NTLIPL 112 (452)
T ss_dssp CC---------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC-S--SCHHHH
T ss_pred HHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC-H--HHHHHH
Confidence 33344444555 5666666655542 2334444444333333 55566666666655542 2 244455
Q ss_pred HHHHHhcCCcc---hHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 036577 149 INCFCKMGRVS---PGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRT 225 (470)
Q Consensus 149 i~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 225 (470)
...|...+..+ ++.+.+......| +...+..|...|...+.++++......+.+.-...+...+..+...|...
T Consensus 113 g~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~ 189 (452)
T 3e4b_A 113 AMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKK 189 (452)
T ss_dssp HHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 55555444322 2333344333333 23344455555555554333333322222111122333566666666666
Q ss_pred C---ChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhC----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-
Q 036577 226 G---HTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKE----GFVDKAKELFLKMKDENINPNVVTYNSLIHG- 297 (470)
Q Consensus 226 g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~- 297 (470)
| +.++|++.|++..+.+ +++...+..+...|... +++++|.++|++.. . -+...+..+...
T Consensus 190 g~~~~~~~A~~~~~~aa~~g-------~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~ 258 (452)
T 3e4b_A 190 QQPEQQAELLKQMEAGVSRG-------TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLL 258 (452)
T ss_dssp TCHHHHHHHHHHHHHHHHTT-------CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHH
Confidence 6 6666666666666655 44555445555555443 46666666666655 2 234444445444
Q ss_pred H--HccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcC-----CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc
Q 036577 298 F--CYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNG-----KMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCL 370 (470)
Q Consensus 298 ~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 370 (470)
+ ...+++++|...|++..+.| +...+..+...|. .| ++++|...|++.. . -+...+..|...|..
T Consensus 259 ~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 259 YDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRR 330 (452)
T ss_dssp HHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHT
T ss_pred HhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHC
Confidence 3 34566666666666666554 4445555555554 33 6666666666655 2 244555555555544
Q ss_pred ----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 036577 371 ----TGRVNRAKELFVSMESNRCMHDVFSYSILINGYCK----NKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIH 442 (470)
Q Consensus 371 ----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 442 (470)
..+.++|...|++..+.| +......|..+|.. ..+.++|..+|+...+.|.. +.......+......+
T Consensus 331 G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~ 406 (452)
T 3e4b_A 331 GYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPA 406 (452)
T ss_dssp TTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHH
T ss_pred CCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHH
Confidence 236666666666666554 23344455555543 34566666666666655422 2222222222222334
Q ss_pred CHHHHHHHHHHHH
Q 036577 443 QVERAFKLFDEMR 455 (470)
Q Consensus 443 ~~~~A~~~~~~m~ 455 (470)
+.++|.++.++..
T Consensus 407 ~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 407 QRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555544
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.71 E-value=5.8e-14 Score=124.01 Aligned_cols=223 Identities=11% Similarity=-0.028 Sum_probs=132.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCcccCC
Q 036577 176 DAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCR----TGHTIVALNLFEEMANGNGEIGVVCEP 251 (470)
Q Consensus 176 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 251 (470)
+..++..+...|...|++++|++.|++..+. .+...+..+...|.. .+++++|++.|++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 4455666666666666666666666666652 344555666666666 666666666666665533
Q ss_pred CHhhHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCH
Q 036577 252 NTVTYTTIIDGLCK----EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCY----ANDWNEAKCLLIEMMDQGVQPNV 323 (470)
Q Consensus 252 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 323 (470)
+...+..+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +.
T Consensus 73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~ 146 (273)
T 1ouv_A 73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DG 146 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cH
Confidence 45556666666666 666666666666666543 45556666666665 666666666666666544 34
Q ss_pred hHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHH
Q 036577 324 VTFNVIMDELCK----NGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCL----TGRVNRAKELFVSMESNRCMHDVFS 395 (470)
Q Consensus 324 ~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~ 395 (470)
..+..+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 220 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGG 220 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHH
Confidence 445555555555 566666666666665543 34455555555655 566666666666655543 2445
Q ss_pred HHHHHHHHHH----cCChhHHHHHHHHHHHC
Q 036577 396 YSILINGYCK----NKEIEGALSLYSEMLSK 422 (470)
Q Consensus 396 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 422 (470)
+..+..+|.. .+++++|.+.|++..+.
T Consensus 221 ~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 221 CFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 5555555555 56666666666665554
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.70 E-value=4e-15 Score=136.95 Aligned_cols=244 Identities=9% Similarity=-0.039 Sum_probs=193.6
Q ss_pred ccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036577 75 KSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKH-YDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153 (470)
Q Consensus 75 ~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 153 (470)
...+..+...|++++|+..|+.++...|. +..+|+.+..++...|+ +++|+..|+++++.. +.+...|..+..++.
T Consensus 101 ~~lg~~~~~~g~~~~Al~~~~~al~l~P~--~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 101 DYFRAVLQRDERSERAFKLTRDAIELNAA--NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhCcc--CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 33344455678899999999999999887 88999999999999996 999999999998875 667889999999999
Q ss_pred hcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh-cCChHHH-
Q 036577 154 KMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCR-TGHTIVA- 231 (470)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~-~g~~~~a- 231 (470)
..|++++|+..|+++++.. +.+..+|..+..++...|++++|+..|+++.+.. +.+...|+.+..++.. .|..++|
T Consensus 178 ~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHH
Confidence 9999999999999999874 5578899999999999999999999999998864 3467888889888888 6665777
Q ss_pred ----HHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC---
Q 036577 232 ----LNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEG--FVDKAKELFLKMKDENINPNVVTYNSLIHGFCYAN--- 302 (470)
Q Consensus 232 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--- 302 (470)
++.|++..... +.+...|..+..++.+.| ++++|.+.+.++ +. .+.+...+..+..+|.+.|
T Consensus 256 ~~~el~~~~~Al~l~-------P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 256 LEREVQYTLEMIKLV-------PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp HHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccc
Confidence 58888888876 567788888888888877 588888888887 33 3446777888888887764
Q ss_pred ------CHHHHHHHHHHH-HHCCCCCCHhHHHHHHHHH
Q 036577 303 ------DWNEAKCLLIEM-MDQGVQPNVVTFNVIMDEL 333 (470)
Q Consensus 303 ------~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~ 333 (470)
..++|+.+++++ .+.. +.....|..+...+
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 257888888887 5542 33344555554444
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.70 E-value=6.9e-15 Score=129.83 Aligned_cols=127 Identities=10% Similarity=0.150 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 036577 215 YSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSL 294 (470)
Q Consensus 215 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 294 (470)
|..+...+...|++++|++.|++..... +.+..++..+...+...|++++|.+.+++..+.. +.+...+..+
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l 148 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRD-------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYEL 148 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHH
Confidence 3344444444444444444444444432 2233344444444444444444444444444331 1233333333
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCC---HHHHHHHHHHHH
Q 036577 295 IHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGK---MDEASRLLDLMI 350 (470)
Q Consensus 295 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~ 350 (470)
...+...+++++|...|+++.+.. +.+...+..+..++...|+ +++|...++++.
T Consensus 149 ~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 149 GQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 312222224444444444444332 2223333334444444443 344444444433
No 46
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.69 E-value=2.7e-13 Score=137.91 Aligned_cols=307 Identities=13% Similarity=0.137 Sum_probs=239.4
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHH
Q 036577 83 TTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGF 162 (470)
Q Consensus 83 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 162 (470)
..+++++|.++.+++ .++.+|..+..++.+.|++++|++.|.+. .|...|..++.++.+.|++++|.
T Consensus 1088 ~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAI 1154 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 1154 (1630)
T ss_pred HHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHH
Confidence 345677777777655 36889999999999999999999999663 57888999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 036577 163 VVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242 (470)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 242 (470)
+.+....+.. ++....+.++.+|++.+++++.... .+ .++...|..+...|...|++++|..+|...
T Consensus 1155 eyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---- 1221 (1630)
T 1xi4_A 1155 KYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 1221 (1630)
T ss_pred HHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----
Confidence 9999887764 3444445699999999998864443 22 256677888999999999999999999985
Q ss_pred CCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 036577 243 GEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPN 322 (470)
Q Consensus 243 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 322 (470)
..|..+..++.+.|++++|.+.+++.. +..+|..+..+|...|++..|......+ ..+
T Consensus 1222 -----------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~ 1279 (1630)
T 1xi4_A 1222 -----------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVH 1279 (1630)
T ss_pred -----------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcC
Confidence 268899999999999999999998773 6689999999999999999998876643 446
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcC--CCHHHHHHHHHHHHHCCCCC------CHH
Q 036577 323 VVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLT--GRVNRAKELFVSMESNRCMH------DVF 394 (470)
Q Consensus 323 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~------~~~ 394 (470)
...+..++..|.+.|.+++|+.+++...... +-....|+-+...|++. ++..++.++|..-.. +++ +..
T Consensus 1280 ~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~ 1356 (1630)
T 1xi4_A 1280 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAH 1356 (1630)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHH
Confidence 6778899999999999999999999888765 33566777777776654 556666666654322 222 677
Q ss_pred HHHHHHHHHHHcCChhHHHHH-------------HHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 036577 395 SYSILINGYCKNKEIEGALSL-------------YSEMLSKGIKPDVVIYNTLFIGLFEIH 442 (470)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~-------------~~~~~~~~~~p~~~~~~~l~~~~~~~g 442 (470)
.|..++..|.+.|+++.|... |++.+.+ ..|...|...+.-|...+
T Consensus 1357 lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1357 LWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc--cccHHHHHHHHHHHHhhC
Confidence 899999999999999999832 2222222 336666766666666555
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.69 E-value=1.6e-13 Score=121.10 Aligned_cols=222 Identities=13% Similarity=-0.004 Sum_probs=122.0
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCC
Q 036577 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCK----EGFVDKAKELFLKMKDENINPN 287 (470)
Q Consensus 212 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~ 287 (470)
..++..+...+...|++++|++.|++..+.+ +...+..+...+.. .+++++|.+.|++..+.+ +
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~ 73 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---Y 73 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---C
Confidence 3444555555555566666666665555422 23445555555555 566666666665555543 4
Q ss_pred HHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHh
Q 036577 288 VVTYNSLIHGFCY----ANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCK----NGKMDEASRLLDLMIQIGVRPNAF 359 (470)
Q Consensus 288 ~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 359 (470)
...+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +..
T Consensus 74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~ 147 (273)
T 1ouv_A 74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGD 147 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHH
Confidence 4555555555555 556666666665555543 44455555555555 556666666666555543 344
Q ss_pred HHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHhHH
Q 036577 360 VYNTLMDGFCL----TGRVNRAKELFVSMESNRCMHDVFSYSILINGYCK----NKEIEGALSLYSEMLSKGIKPDVVIY 431 (470)
Q Consensus 360 ~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~ 431 (470)
.+..+...|.. .+++++|...|++..+.+ +...+..+..+|.. .+++++|+..|++..+.+ +...+
T Consensus 148 a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 221 (273)
T 1ouv_A 148 GCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGC 221 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHH
Confidence 45555555555 556666666665555543 34555555555555 556666666666555542 24444
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHc
Q 036577 432 NTLFIGLFE----IHQVERAFKLFDEMRRD 457 (470)
Q Consensus 432 ~~l~~~~~~----~g~~~~A~~~~~~m~~~ 457 (470)
..+...|.. .|++++|.+++++..+.
T Consensus 222 ~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 222 FNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 555555555 55566666666555553
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.69 E-value=1.4e-14 Score=133.33 Aligned_cols=252 Identities=11% Similarity=0.044 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 036577 142 LYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESR-IMEAAALFTKLKAFGCEPNVITYSTLIN 220 (470)
Q Consensus 142 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 220 (470)
...|..+..++...|++++|++.++++++.. +.+..+|+.+..++...|+ +++|+..|+++.... +-+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3455555555666666666666666665543 3345555556666666664 666666666555542 223445555555
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 036577 221 GLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCY 300 (470)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 300 (470)
++...|++++|+..|+++...+ +.+...|..+..++.+.|++++|+..++++.+.. +-+...|+.+..++..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-------P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 5555555555555555555544 3445555555555555555555555555555432 1234444444444444
Q ss_pred -cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCC--CHHHH
Q 036577 301 -ANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTG--RVNRA 377 (470)
Q Consensus 301 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A 377 (470)
.|..++|. .+.++..+++.++..+. +...|..+...+...| ++++|
T Consensus 247 l~~~~~eA~------------------------------~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a 295 (382)
T 2h6f_A 247 TTGYNDRAV------------------------------LEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNL 295 (382)
T ss_dssp TTCSCSHHH------------------------------HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHH
T ss_pred hcCcchHHH------------------------------HHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHH
Confidence 23323331 01113555555555433 4555666666666555 46666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---------ChhHHHHHHHHH-HHCCCCCC-HhHHHHHHHHH
Q 036577 378 KELFVSMESNRCMHDVFSYSILINGYCKNK---------EIEGALSLYSEM-LSKGIKPD-VVIYNTLFIGL 438 (470)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~~~A~~~~~~~-~~~~~~p~-~~~~~~l~~~~ 438 (470)
.+.+..+ +. .+.+...+..++.+|.+.| ..++|+++++++ .+. .|. ...|..+...+
T Consensus 296 ~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 296 LNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK--DTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHH
T ss_pred HHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHH
Confidence 6666655 22 2335566666666666653 246677777666 433 333 23444444443
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.68 E-value=3.6e-14 Score=123.69 Aligned_cols=201 Identities=13% Similarity=-0.030 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036577 107 VSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKG 186 (470)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (470)
+..|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3445555556666666666666666655543 3345555555555555555555655555555442 2344555555555
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHh
Q 036577 187 LCAESRIMEAAALFTKLKAFGCEP-NVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCK 265 (470)
Q Consensus 187 ~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 265 (470)
|...|++++|.+.++++...+..| +...+..+...+...|++++|.+.++++.... +.+...+..+...+..
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~ 187 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-------RNQPSVALEMADLLYK 187 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHH
Confidence 555566666666555555421112 23444555555555555555555555555443 3344555555555555
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 036577 266 EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ 317 (470)
Q Consensus 266 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (470)
.|++++|...++.+.... +.+...+..+...+...|++++|...++++.+.
T Consensus 188 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 188 EREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp TTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 555555555555554432 234444555555555555555555555555444
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.68 E-value=2.2e-14 Score=125.08 Aligned_cols=208 Identities=15% Similarity=0.027 Sum_probs=179.8
Q ss_pred HhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 036577 253 TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDE 332 (470)
Q Consensus 253 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 332 (470)
...+..+...+...|++++|.+.|+++.... +.+...+..+...|...|++++|...++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 5778889999999999999999999998763 3478889999999999999999999999998875 4577889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhH
Q 036577 333 LCKNGKMDEASRLLDLMIQIGVRP-NAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEG 411 (470)
Q Consensus 333 ~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 411 (470)
+...|++++|...++++.+.+..| +...+..++..+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998832333 56788889999999999999999999998864 4478899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhh
Q 036577 412 ALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTWTY 466 (470)
Q Consensus 412 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 466 (470)
|...++++.+.. +.+...+..+...+...|++++|.++++++.+ ..|+...+
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~ 245 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR--LYPGSLEY 245 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTSHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCCHHH
Confidence 999999998753 34667888889999999999999999999987 45554443
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.68 E-value=1.8e-15 Score=133.82 Aligned_cols=246 Identities=11% Similarity=-0.002 Sum_probs=161.3
Q ss_pred cCCHHHHHHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhC
Q 036577 190 ESRIMEAAALFTKLKAFGC---EPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKE 266 (470)
Q Consensus 190 ~g~~~~a~~~~~~~~~~g~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 266 (470)
.|++++|+..|+++.+... +.+..++..+...+...|++++|...|+++.... +.+..++..+..++...
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-------PDMPEVFNYLGIYLTQA 90 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHc
Confidence 4567777777777765421 1134556666777777777777777777777654 44566777777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 036577 267 GFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLL 346 (470)
Q Consensus 267 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 346 (470)
|++++|.+.|+++.... +.+...+..+..+|...|++++|...++++.+.. |+.......+..+...|++++|...+
T Consensus 91 ~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVL 167 (275)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHH
Confidence 77777777777776642 2345667777777777777777777777777653 33333333444456668888888888
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 036577 347 DLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCM---HDVFSYSILINGYCKNKEIEGALSLYSEMLSKG 423 (470)
Q Consensus 347 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 423 (470)
........ ++...+ .++..+...++.++|...++........ .+...|..+..+|...|++++|...|+++++.
T Consensus 168 ~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~- 244 (275)
T 1xnf_A 168 KQHFEKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN- 244 (275)
T ss_dssp HHHHHHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred HHHHhcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-
Confidence 77776533 233333 3666677777788888888776554211 02567888888888999999999999988865
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 036577 424 IKPDVVIYNTLFIGLFEIHQVERAFKLF 451 (470)
Q Consensus 424 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 451 (470)
.|+. +.....++...|++++|++.+
T Consensus 245 -~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 245 -NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred -Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 3432 233355677778888887765
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.67 E-value=3.4e-14 Score=121.29 Aligned_cols=212 Identities=8% Similarity=-0.066 Sum_probs=181.0
Q ss_pred CCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 036577 250 EPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVI 329 (470)
Q Consensus 250 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 329 (470)
+.+...+..+...+...|++++|.+.++.+.... +.+...+..+...|...|++++|...++++.+.. +.+...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 82 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 4567788999999999999999999999988763 3468889999999999999999999999998875 5577889999
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 036577 330 MDELCKN-GKMDEASRLLDLMIQIGVRP-NAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNK 407 (470)
Q Consensus 330 ~~~~~~~-g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 407 (470)
...+... |++++|...++++.+.+..| +...+..++..+...|++++|...++++.+.. +.+...+..++.++...|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcC
Confidence 9999999 99999999999999832233 36788899999999999999999999998864 446889999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhh
Q 036577 408 EIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTWTY 466 (470)
Q Consensus 408 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 466 (470)
++++|...++++.+.....+...+..+...+...|+.++|..+++.+.+ ..|+...+
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~ 218 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA--NFPYSEEL 218 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHH
Confidence 9999999999998764324667788888888999999999999999986 45655443
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.67 E-value=9.6e-15 Score=126.48 Aligned_cols=201 Identities=13% Similarity=0.124 Sum_probs=117.6
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHH
Q 036577 211 NVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVT 290 (470)
Q Consensus 211 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 290 (470)
....|..+...+...|++++|...|+++.... +.+...+..+...+...|++++|.+.++++.... +.+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 93 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-------KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATA 93 (243)
T ss_dssp --------------------CCTTHHHHHTTC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHH
Confidence 34445555556666666666666666666543 4455666666666666666666666666665542 235556
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc
Q 036577 291 YNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCL 370 (470)
Q Consensus 291 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 370 (470)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..++..+..
T Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 171 (243)
T 2q7f_A 94 YYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLAN 171 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHH
Confidence 6666666666677777777666666553 345556666666677777777777777776665432 55666667777777
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 371 TGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 371 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
.|++++|...++++.+.. +.+..++..+..+|...|++++|...++++.+.
T Consensus 172 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 172 EGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 777777777777766543 335666777777777777777777777777654
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.67 E-value=3.6e-14 Score=121.13 Aligned_cols=203 Identities=11% Similarity=-0.038 Sum_probs=121.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIK 185 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (470)
++..|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45666777777777777777777777776653 4456666666667777777777777776666543 335556666666
Q ss_pred HHHhc-CCHHHHHHHHHHHHhcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHH
Q 036577 186 GLCAE-SRIMEAAALFTKLKAFGCEP-NVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGL 263 (470)
Q Consensus 186 ~~~~~-g~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 263 (470)
.+... |++++|...++++.+.+..| +...+..+...+...|++++|+..++++.... +.+...+..+..++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~ 157 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-------PQFPPAFKELARTK 157 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCchHHHHHHHHH
Confidence 66666 66666666666666521112 23455555666666666666666666665543 33455555666666
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 036577 264 CKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ 317 (470)
Q Consensus 264 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (470)
.+.|++++|.+.++.+.......+...+..+...+...|+.+++...++.+.+.
T Consensus 158 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 158 MLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 666666666666665554321134444555555555555555555555555443
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.67 E-value=6.4e-15 Score=127.62 Aligned_cols=198 Identities=12% Similarity=0.008 Sum_probs=135.4
Q ss_pred HhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036577 73 RFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152 (470)
Q Consensus 73 ~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 152 (470)
.+...|..+...|++++|+..|+.+++..|. +..++..+...+...|++++|+..++++.+.. +.+...+..+...+
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENKE--DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp -----------------CCTTHHHHHTTCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 3445566667778888888888888887765 67788888888888888888888888887764 45677777788888
Q ss_pred HhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 036577 153 CKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVAL 232 (470)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~ 232 (470)
...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|+
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888877754 4466677777777778888888888887776653 235566777777777777777777
Q ss_pred HHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 036577 233 NLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE 282 (470)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 282 (470)
+.++++.... +.+..++..+..++...|++++|.+.++++.+.
T Consensus 180 ~~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 180 SQFAAVTEQD-------PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 7777777654 445667777777777777777777777777664
No 56
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.66 E-value=5.4e-14 Score=133.37 Aligned_cols=338 Identities=11% Similarity=-0.002 Sum_probs=232.1
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--
Q 036577 82 ITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHY---DTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG-- 156 (470)
Q Consensus 82 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-- 156 (470)
...|++++|++.|+.+.+.+ ++.++..+...+...|++ ++|...|++..+. +...+..+...+...+
T Consensus 14 ~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHHHHTC--C
T ss_pred HhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCC
Confidence 34678999999999998764 344566677777778888 9999999998864 5667777777666665
Q ss_pred ---CcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH
Q 036577 157 ---RVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIM---EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIV 230 (470)
Q Consensus 157 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 230 (470)
+.++|...|++..+.|.. + .+..|...|...+..+ ++.+.+.+....| +...+..+...|...+.+++
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 678999999999997732 3 6667888887766544 3455555555543 56778888888888885554
Q ss_pred HH----HHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHh---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc--
Q 036577 231 AL----NLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCK---EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYA-- 301 (470)
Q Consensus 231 a~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-- 301 (470)
+. .+++.... .++..+..+...|.. ..+.++|++.|++..+.| +++...+..+...|...
T Consensus 160 ~~~~a~~~~~~a~~----------~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~ 228 (452)
T 3e4b_A 160 HLDDVERICKAALN----------TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATL 228 (452)
T ss_dssp GHHHHHHHHHHHTT----------TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGG
T ss_pred CHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCC
Confidence 44 44444432 223366667666653 357999999999999987 34666667777777655
Q ss_pred --CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH-H--HHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCC----
Q 036577 302 --NDWNEAKCLLIEMMDQGVQPNVVTFNVIMDE-L--CKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTG---- 372 (470)
Q Consensus 302 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---- 372 (470)
+++++|...|++.. .| +...+..+... + ...+++++|...|++..+.| +...+..|...|. .|
T Consensus 229 ~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~ 300 (452)
T 3e4b_A 229 GTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVP 300 (452)
T ss_dssp SSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSC
T ss_pred CCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCC
Confidence 79999999999987 43 45566666666 4 56899999999999999876 6777888888887 55
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCC
Q 036577 373 -RVNRAKELFVSMESNRCMHDVFSYSILINGYCK----NKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFE----IHQ 443 (470)
Q Consensus 373 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 443 (470)
+.++|...|++.. .+ +...+..+...|.. ..++++|..+|++..+.|. ......|...|.. ..+
T Consensus 301 ~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d 373 (452)
T 3e4b_A 301 ADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPD 373 (452)
T ss_dssp CCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCC
T ss_pred CCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCC
Confidence 9999999999887 44 77888888888876 3499999999999998763 4455566666664 458
Q ss_pred HHHHHHHHHHHHHcCC
Q 036577 444 VERAFKLFDEMRRDGV 459 (470)
Q Consensus 444 ~~~A~~~~~~m~~~g~ 459 (470)
.++|..+|++..+.|.
T Consensus 374 ~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 374 PLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHCCC
Confidence 9999999999988774
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.64 E-value=1.5e-14 Score=135.49 Aligned_cols=304 Identities=11% Similarity=-0.005 Sum_probs=214.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCcchHHHHHHHHHhC----CCCC-
Q 036577 105 PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPD----LYTYNILINCFCKMGRVSPGFVVLGRILRS----CFTP- 175 (470)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~- 175 (470)
.....+......+...|++++|+..|+++.+.+ +.+ ...+..+...+...|++++|...+++.+.. +..+
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 456677788888899999999999999988764 334 357788888999999999999998887542 2111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----cchHHHHHHHHHhcCC--------------------hHH
Q 036577 176 DAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCE-PN----VITYSTLINGLCRTGH--------------------TIV 230 (470)
Q Consensus 176 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-~~----~~~~~~l~~~~~~~g~--------------------~~~ 230 (470)
...++..+...|...|++++|...+++..+.... .+ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2557888889999999999999999887653100 11 3477888889999999 999
Q ss_pred HHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCCHH
Q 036577 231 ALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENI-NPN----VVTYNSLIHGFCYANDWN 305 (470)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~~~~ 305 (470)
|.+.+++........+. .+....++..+...+...|++++|.+.+++...... .++ ..++..+...|...|+++
T Consensus 166 A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGD-RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhccC-cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 99998887653211000 122345788888999999999999999988765310 112 236777888888899999
Q ss_pred HHHHHHHHHHHC----CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HhHHHHHHHHHHcCCCHH
Q 036577 306 EAKCLLIEMMDQ----GVQP-NVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVR-PN----AFVYNTLMDGFCLTGRVN 375 (470)
Q Consensus 306 ~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~ 375 (470)
+|...+++..+. +..+ ...++..+...|...|++++|...+++..+.... .+ ..++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999888887643 1111 1456777788888888888888888887654211 11 456777788888888888
Q ss_pred HHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCChh
Q 036577 376 RAKELFVSMESN----RCM-HDVFSYSILINGYCKNKEIE 410 (470)
Q Consensus 376 ~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~ 410 (470)
+|...+++..+. +.. ....++..+...+...|+..
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 888888776542 111 13455666677777666653
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.64 E-value=1.2e-14 Score=136.64 Aligned_cols=272 Identities=15% Similarity=0.045 Sum_probs=151.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-----chHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhH
Q 036577 182 SLIKGLCAESRIMEAAALFTKLKAFGCEPNV-----ITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTY 256 (470)
Q Consensus 182 ~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (470)
.+...+...|++++|+..|+++.+.+ |+. ..+..+...|...|++++|+..+++........+. .+....++
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 129 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND-RLGEAKSS 129 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC-chHHHHHH
Confidence 34444555555555555555555432 221 23444555555555555555555554432100000 12233455
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHccCC-----------------HHHHHHHHHHH
Q 036577 257 TTIIDGLCKEGFVDKAKELFLKMKDE----N-INPNVVTYNSLIHGFCYAND-----------------WNEAKCLLIEM 314 (470)
Q Consensus 257 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~~~-----------------~~~a~~~~~~~ 314 (470)
..+...|...|++++|...+++.... + .+....++..+...|...|+ +++|...+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 55666666666666666666655432 0 11123355556666666666 66666666655
Q ss_pred HHC----CCC-CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HhHHHHHHHHHHcCCCHHHHHHHHHHH
Q 036577 315 MDQ----GVQ-PNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVR-PN----AFVYNTLMDGFCLTGRVNRAKELFVSM 384 (470)
Q Consensus 315 ~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 384 (470)
.+. +.. .....+..+...+...|++++|...+++..+.... .+ ...+..+...|...|++++|...+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 432 111 12235666666777777777777777776553111 01 225666777777777777777777766
Q ss_pred HHCCC---C--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036577 385 ESNRC---M--HDVFSYSILINGYCKNKEIEGALSLYSEMLSK----GIK-PDVVIYNTLFIGLFEIHQVERAFKLFDEM 454 (470)
Q Consensus 385 ~~~~~---~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 454 (470)
..... . ....++..+..+|...|++++|...+++.++. +.. ....++..+...+...|++++|.+++++.
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 54210 0 12456677777777788888888777776643 111 11336666777777788888888877777
Q ss_pred HH
Q 036577 455 RR 456 (470)
Q Consensus 455 ~~ 456 (470)
.+
T Consensus 370 l~ 371 (411)
T 4a1s_A 370 LQ 371 (411)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.63 E-value=2.3e-14 Score=134.59 Aligned_cols=283 Identities=14% Similarity=0.054 Sum_probs=184.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHH
Q 036577 107 VSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDL----YTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNS 182 (470)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 182 (470)
...+..+...+...|++++|+..|+++.+.+ +.+. ..+..+...+...|++++|...+++.++..
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------- 116 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA---------- 116 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH----------
Confidence 3444555666666777777777777666543 2222 244455555555555555555555543310
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC-CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHH
Q 036577 183 LIKGLCAESRIMEAAALFTKLKAFG-CEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIID 261 (470)
Q Consensus 183 l~~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 261 (470)
...+ .+....++..+...|...|++++|...+++........+. .+....++..+..
T Consensus 117 ---------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~ 174 (411)
T 4a1s_A 117 ---------------------KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGD-RLSEGRALYNLGN 174 (411)
T ss_dssp ---------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHH
T ss_pred ---------------------HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHH
Confidence 0000 0112334445555555566666666655555443100000 1223457778888
Q ss_pred HHHhCCC-----------------HHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 036577 262 GLCKEGF-----------------VDKAKELFLKMKDE----N-INPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGV 319 (470)
Q Consensus 262 ~~~~~g~-----------------~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 319 (470)
.|...|+ +++|.+.+++.... + ......++..+...|...|++++|...+++..+...
T Consensus 175 ~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 254 (411)
T 4a1s_A 175 VYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAR 254 (411)
T ss_dssp HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 8888888 88998888876542 1 112345778888999999999999999998876421
Q ss_pred C-CC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-
Q 036577 320 Q-PN----VVTFNVIMDELCKNGKMDEASRLLDLMIQIGVR-----PNAFVYNTLMDGFCLTGRVNRAKELFVSMESNR- 388 (470)
Q Consensus 320 ~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 388 (470)
. .+ ...+..+...|...|++++|...+++..+.... ....++..+...+...|++++|...+++.....
T Consensus 255 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 255 EFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 0 11 237788889999999999999999988765221 125678889999999999999999999876531
Q ss_pred ----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 389 ----CMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 389 ----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
......++..+..+|...|++++|...+++..+.
T Consensus 335 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 335 ELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 0113457888999999999999999999998864
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.62 E-value=3.4e-14 Score=133.06 Aligned_cols=100 Identities=14% Similarity=0.083 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCc
Q 036577 141 DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD----AVTFNSLIKGLCAESRIMEAAALFTKLKAF----GCEPNV 212 (470)
Q Consensus 141 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~~~~ 212 (470)
....+......+...|++++|...++++++.+ +.+ ..++..+...|...|++++|...+++.... +..+..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 34444555555555666666666665555542 112 234555555555555555555555554322 101111
Q ss_pred c-hHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 036577 213 I-TYSTLINGLCRTGHTIVALNLFEEMANG 241 (470)
Q Consensus 213 ~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 241 (470)
. ++..+...+...|++++|...+++....
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 116 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDI 116 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 2333444555555555555555555544
No 61
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.61 E-value=5.2e-13 Score=120.08 Aligned_cols=219 Identities=13% Similarity=0.059 Sum_probs=143.7
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh-------cCCh-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036577 88 NEAFCIFDYMLNMRPSPPPVSSFNILFGCLAK-------NKHY-------DTVLSLFKRLNSTGLFPDLYTYNILINCFC 153 (470)
Q Consensus 88 ~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 153 (470)
++|+.+|+.++...|. ++..|..++..+.. .|++ ++|..+|++..+.-.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~p~--~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH--HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 7899999999998886 89999998888764 4765 778888887776311445667777777777
Q ss_pred hcCCcchHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH-hcCChHHH
Q 036577 154 KMGRVSPGFVVLGRILRSCFTPDAV-TFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLC-RTGHTIVA 231 (470)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~g~~~~a 231 (470)
..|++++|.++|+++++.. +.+.. +|..++..+.+.|++++|..+|++..+.. +.+...|........ ..|+.++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 7777777777777777642 11233 67777777777777777777777776643 223333332222211 25777777
Q ss_pred HHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHccCCHHHHH
Q 036577 232 LNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDEN-INP--NVVTYNSLIHGFCYANDWNEAK 308 (470)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~~~~~~a~ 308 (470)
.++|++..+.. +.+...|..++..+.+.|++++|..+|++..... ++| ....|..++....+.|+.+.|.
T Consensus 189 ~~~~~~al~~~-------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~ 261 (308)
T 2ond_A 189 FKIFELGLKKY-------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 261 (308)
T ss_dssp HHHHHHHHHHH-------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHhC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 77777766654 3456666666666666777777777777666642 232 3455666666666666666666
Q ss_pred HHHHHHHHC
Q 036577 309 CLLIEMMDQ 317 (470)
Q Consensus 309 ~~~~~~~~~ 317 (470)
.+++++.+.
T Consensus 262 ~~~~~a~~~ 270 (308)
T 2ond_A 262 KVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666554
No 62
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.61 E-value=1.4e-13 Score=127.95 Aligned_cols=301 Identities=9% Similarity=-0.062 Sum_probs=167.9
Q ss_pred HHhcCChHHHHHHHHHHHhC--CCCCCH--HHHHHHHHHH--HhcCCcchHH-----------HHHHHHHhCCCCCC---
Q 036577 117 LAKNKHYDTVLSLFKRLNST--GLFPDL--YTYNILINCF--CKMGRVSPGF-----------VVLGRILRSCFTPD--- 176 (470)
Q Consensus 117 ~~~~~~~~~A~~~~~~m~~~--~~~~~~--~~~~~li~~~--~~~g~~~~a~-----------~~~~~~~~~~~~~~--- 176 (470)
+.+.+++++|..+++++.+. .+..|. ..|..++..- .-.++++.+. +.++.+.....+.+
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 34578888888888887553 222333 2333333221 1223333333 66666544211111
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccC
Q 036577 177 -AVTFNSLIKGLCAESRIMEAAALFTKLKAF----GCEP-NVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCE 250 (470)
Q Consensus 177 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 250 (470)
...+......+...|++++|...|++..+. +-++ ...++..+...|...|++++|+..+++........+....
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 112223566778899999999999998764 1111 3467888999999999999999999998765422110011
Q ss_pred CCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CC-C
Q 036577 251 PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE----NI-NPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ----GV-Q 320 (470)
Q Consensus 251 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~ 320 (470)
....++..+..+|...|++++|.+.+++..+. +. .....++..+..+|...|++++|...+++..+. +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 22456778888888888888888888877643 10 011235666666677777777777777666551 21 2
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCCHhHHHHHHHHHHcCCC---HHHHHHHHHHHHHCCCCC-C
Q 036577 321 PNVVTFNVIMDELCKNGKMDEASRLLDLMIQIG----VRPNAFVYNTLMDGFCLTGR---VNRAKELFVSMESNRCMH-D 392 (470)
Q Consensus 321 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~-~ 392 (470)
....++..+...+.+.|++++|...+++..+.. -+.....+..+...+...|+ +++|..+++.. +..+ .
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~ 338 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADL 338 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHH
Confidence 234455666666666666666666666654431 11111223444455555555 44444444332 1111 2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 036577 393 VFSYSILINGYCKNKEIEGALSLYSEML 420 (470)
Q Consensus 393 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 420 (470)
...+..+...|...|++++|...+++..
T Consensus 339 ~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 339 EDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2234444445555555555555554443
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.61 E-value=2.5e-13 Score=112.11 Aligned_cols=174 Identities=14% Similarity=0.076 Sum_probs=103.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 036577 287 NVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMD 366 (470)
Q Consensus 287 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 366 (470)
+..+|..+...|...|++++|+..|++..+.. +-+...+..+..+|.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 44555566666666666666666666665553 344555666666666666666666666666555433 4555555566
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHH
Q 036577 367 GFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVER 446 (470)
Q Consensus 367 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 446 (470)
.+...++++.|...+.+..... +.+...+..+..+|.+.|++++|++.|++.++... .+...|..+..++.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHH
Confidence 6666666666666666655542 33556666666666666666666666666665422 244566666666666666666
Q ss_pred HHHHHHHHHHcCCCCChhhh
Q 036577 447 AFKLFDEMRRDGVAADTWTY 466 (470)
Q Consensus 447 A~~~~~~m~~~g~~p~~~~~ 466 (470)
|.+.|++..+ +.|+...|
T Consensus 160 A~~~~~~al~--~~p~~a~~ 177 (184)
T 3vtx_A 160 AVKYFKKALE--KEEKKAKY 177 (184)
T ss_dssp HHHHHHHHHH--TTHHHHHH
T ss_pred HHHHHHHHHh--CCccCHHH
Confidence 6666666665 45554433
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.60 E-value=5.5e-14 Score=127.84 Aligned_cols=274 Identities=15% Similarity=0.066 Sum_probs=176.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-----cchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHh
Q 036577 180 FNSLIKGLCAESRIMEAAALFTKLKAFGCEPN-----VITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTV 254 (470)
Q Consensus 180 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 254 (470)
+......+...|++++|...|+++.+.. |+ ...+..+...+...|++++|.+.+++........+. .+....
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~ 84 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD-QLGEAK 84 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccc-cHHHHH
Confidence 3344555666666666666666666542 22 244555666666666666666666665432100000 112245
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCC--------------------HHHHHH
Q 036577 255 TYTTIIDGLCKEGFVDKAKELFLKMKDENI-NPN----VVTYNSLIHGFCYAND--------------------WNEAKC 309 (470)
Q Consensus 255 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~~--------------------~~~a~~ 309 (470)
++..+...+...|++++|...+++...... .++ ..++..+...|...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 566667777777777777777766544200 011 3356666777777777 777777
Q ss_pred HHHHHHHC----CC-CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-C----CHhHHHHHHHHHHcCCCHHHHHH
Q 036577 310 LLIEMMDQ----GV-QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVR-P----NAFVYNTLMDGFCLTGRVNRAKE 379 (470)
Q Consensus 310 ~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~ 379 (470)
.+++.... +. +.....+..+...+...|++++|...+++..+.... + ...++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77665432 11 112346777778888888998888888887654111 1 12367788888889999999999
Q ss_pred HHHHHHHC----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCC-CCHhHHHHHHHHHHhcCCHHHHHH
Q 036577 380 LFVSMESN----RCMH-DVFSYSILINGYCKNKEIEGALSLYSEMLSK----GIK-PDVVIYNTLFIGLFEIHQVERAFK 449 (470)
Q Consensus 380 ~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~A~~ 449 (470)
.+++..+. +..+ ...++..+...|...|++++|...+++..+. +.. ....++..+...+...|++++|.+
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 88877642 1011 2567788888999999999999999887653 111 113477788899999999999999
Q ss_pred HHHHHHH
Q 036577 450 LFDEMRR 456 (470)
Q Consensus 450 ~~~~m~~ 456 (470)
++++..+
T Consensus 325 ~~~~a~~ 331 (338)
T 3ro2_A 325 FAEKHLE 331 (338)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999886
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.60 E-value=1.8e-12 Score=116.59 Aligned_cols=217 Identities=10% Similarity=0.022 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHH-------hCCCH-------HHHHHHHHHHHhCCCCCCHHHHHHH
Q 036577 229 IVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLC-------KEGFV-------DKAKELFLKMKDENINPNVVTYNSL 294 (470)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~l 294 (470)
++|..+|+++.... +.+...|..++..+. +.|++ ++|..+|++....-.+.+...|..+
T Consensus 33 ~~a~~~~~~al~~~-------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~ 105 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAY 105 (308)
T ss_dssp HHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 67889999998875 667888888888776 35886 8999999999983123466789999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCC-Hh-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH-cC
Q 036577 295 IHGFCYANDWNEAKCLLIEMMDQGVQPN-VV-TFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFC-LT 371 (470)
Q Consensus 295 i~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 371 (470)
+..+.+.|++++|..+|+++.+. .|+ .. .|..++..+.+.|++++|..+|++..+.... +...|...+.... ..
T Consensus 106 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~ 182 (308)
T 2ond_A 106 ADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCS 182 (308)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTS
T ss_pred HHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHc
Confidence 99999999999999999999986 443 33 7999999999999999999999999987543 4555654444432 37
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCC--CHhHHHHHHHHHHhcCCHHHHH
Q 036577 372 GRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKG-IKP--DVVIYNTLFIGLFEIHQVERAF 448 (470)
Q Consensus 372 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A~ 448 (470)
|+.++|..+|++.++.. +.+...|..++..+.+.|++++|..+|++.++.. +.| ....|..++....+.|+.++|.
T Consensus 183 ~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~ 261 (308)
T 2ond_A 183 KDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 261 (308)
T ss_dssp CCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999998763 4478999999999999999999999999999863 455 3568999999999999999999
Q ss_pred HHHHHHHH
Q 036577 449 KLFDEMRR 456 (470)
Q Consensus 449 ~~~~~m~~ 456 (470)
.+++++.+
T Consensus 262 ~~~~~a~~ 269 (308)
T 2ond_A 262 KVEKRRFT 269 (308)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999987
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.60 E-value=6.7e-14 Score=127.24 Aligned_cols=281 Identities=14% Similarity=0.051 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCcchHHHHHHHHHhC----CC-CCCHH
Q 036577 108 SSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPD----LYTYNILINCFCKMGRVSPGFVVLGRILRS----CF-TPDAV 178 (470)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~ 178 (470)
..+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|.+.+++..+. +. +....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 344555666777777777777777776653 223 345667777777777777777777765542 11 11245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----cchHHHHHHHHHhcCC--------------------hHHHHH
Q 036577 179 TFNSLIKGLCAESRIMEAAALFTKLKAFGCE-PN----VITYSTLINGLCRTGH--------------------TIVALN 233 (470)
Q Consensus 179 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-~~----~~~~~~l~~~~~~~g~--------------------~~~a~~ 233 (470)
++..+...|...|++++|...+++..+.... .+ ..++..+...+...|+ +++|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 6777888888888888888888876543110 11 3367777788888888 788888
Q ss_pred HHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHccCCHHHHH
Q 036577 234 LFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDEN-----INPNVVTYNSLIHGFCYANDWNEAK 308 (470)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~~~~~~a~ 308 (470)
.+++.......... .......+..+...+...|++++|.+.+++..... ......++..+...+...|++++|.
T Consensus 165 ~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 165 LYEENLSLVTALGD-RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 77776543110000 11223456667777777777777777777665420 0001124444445555555555555
Q ss_pred HHHHHHHHCCC-CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 036577 309 CLLIEMMDQGV-QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESN 387 (470)
Q Consensus 309 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (470)
..+++..+... ..+. .....++..+...+...|++++|...+++..+.
T Consensus 244 ~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDR-------------------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HHHHHHHHHHHHTTCH-------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcch-------------------------------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 55554432100 0000 000234444555555555555555555544331
Q ss_pred ----C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 036577 388 ----R-CMHDVFSYSILINGYCKNKEIEGALSLYSEMLS 421 (470)
Q Consensus 388 ----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (470)
+ ......++..+..+|...|++++|...+++..+
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 293 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 0 000133455566666666666666666666654
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.56 E-value=3.5e-13 Score=125.36 Aligned_cols=299 Identities=8% Similarity=-0.010 Sum_probs=212.6
Q ss_pred HHhcCCcchHHHHHHHHHhC--CC--CCCHHHHHHHHHH--HHhcCCHHHHH-----------HHHHHHHhcCCCCCcch
Q 036577 152 FCKMGRVSPGFVVLGRILRS--CF--TPDAVTFNSLIKG--LCAESRIMEAA-----------ALFTKLKAFGCEPNVIT 214 (470)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~--~~~~g~~~~a~-----------~~~~~~~~~g~~~~~~~ 214 (470)
+.+.+++++|..+++++.+. .. .++...|..++.. ....+.++.+. +.++.+.... .+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 45789999999999998663 22 2333444444432 22234444444 6666665431 11111
Q ss_pred ------HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC--CC--
Q 036577 215 ------YSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE--NI-- 284 (470)
Q Consensus 215 ------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~-- 284 (470)
+......+...|++++|+..+++........+. ......++..+...|...|++++|...+++..+. ..
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 178 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKD-RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA 178 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence 223566778899999999999999875221000 0114567899999999999999999999988653 11
Q ss_pred --CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHc----C
Q 036577 285 --NPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ----GVQP-NVVTFNVIMDELCKNGKMDEASRLLDLMIQI----G 353 (470)
Q Consensus 285 --~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~ 353 (470)
.....++..+...|...|++++|...+++..+. +..+ ...++..+..+|...|++++|...+++..+. +
T Consensus 179 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 258 (383)
T 3ulq_A 179 YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN 258 (383)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 112457888899999999999999999988753 1111 1247888999999999999999999998873 2
Q ss_pred C-CCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHCCCC
Q 036577 354 V-RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESN----RCMHDVFSYSILINGYCKNKE---IEGALSLYSEMLSKGIK 425 (470)
Q Consensus 354 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~ 425 (470)
. +....++..+...+.+.|++++|...+++..+. +.+.....+..+...+...|+ +++|+.++++. +..
T Consensus 259 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~ 335 (383)
T 3ulq_A 259 ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLY 335 (383)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCH
T ss_pred cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCH
Confidence 2 334677889999999999999999999887653 111223346778888888998 77788887766 333
Q ss_pred CC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 426 PD-VVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 426 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
|+ ...+..+...|...|++++|.+++++..+
T Consensus 336 ~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 336 ADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33 34777888999999999999999999974
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.55 E-value=2.2e-13 Score=129.96 Aligned_cols=214 Identities=12% Similarity=-0.017 Sum_probs=186.0
Q ss_pred ChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 036577 227 HTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFV-DKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWN 305 (470)
Q Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 305 (470)
.++++++.++...... +.+...+..+...+...|++ ++|.+.|++..+.. +.+...|..+..+|...|+++
T Consensus 83 ~~~~al~~l~~~~~~~-------~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~ 154 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-------QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVT 154 (474)
T ss_dssp HHHHHHHHHHHHHTTC-------CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHhccC-------chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 4667777888776554 56888999999999999999 99999999998864 346889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcC-----
Q 036577 306 EAKCLLIEMMDQGVQPNVVTFNVIMDELCKN---------GKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLT----- 371 (470)
Q Consensus 306 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 371 (470)
+|...|++..+. .|+...+..+..++... |++++|...++++.+..+. +...|..+..+|...
T Consensus 155 ~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~ 231 (474)
T 4abn_A 155 SAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTG 231 (474)
T ss_dssp HHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhc
Confidence 999999999987 46678899999999999 9999999999999998654 788999999999988
Q ss_pred ---CCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHH
Q 036577 372 ---GRVNRAKELFVSMESNRCM---HDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVE 445 (470)
Q Consensus 372 ---g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 445 (470)
|++++|...|++..+.. + .+...|..+..+|...|++++|++.|++..+.... +...+..+..++...|+++
T Consensus 232 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~ 309 (474)
T 4abn_A 232 QNPKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLT 309 (474)
T ss_dssp CCHHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHH
Confidence 99999999999998864 3 48999999999999999999999999999876432 5668888999999999999
Q ss_pred HHHHHHHH
Q 036577 446 RAFKLFDE 453 (470)
Q Consensus 446 ~A~~~~~~ 453 (470)
+|.+.+++
T Consensus 310 eAi~~~~~ 317 (474)
T 4abn_A 310 SLLESKGK 317 (474)
T ss_dssp HHHHHTTT
T ss_pred HHHHHhcc
Confidence 99876544
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.55 E-value=1.9e-13 Score=130.44 Aligned_cols=214 Identities=11% Similarity=0.001 Sum_probs=184.9
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHH
Q 036577 86 TPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHY-DTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVV 164 (470)
Q Consensus 86 ~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 164 (470)
.+++|+..++......+. +...|..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|.+.
T Consensus 83 ~~~~al~~l~~~~~~~~~--~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQV--EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccCch--hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 467788888887776654 889999999999999999 99999999998875 56788999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc--------CC
Q 036577 165 LGRILRSCFTPDAVTFNSLIKGLCAE---------SRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRT--------GH 227 (470)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~--------g~ 227 (470)
|++.++. .|+...+..+...|... |++++|++.|++..+.. +.+...|..+..+|... |+
T Consensus 160 ~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 9999987 46678999999999999 99999999999998864 34678899999999988 99
Q ss_pred hHHHHHHHHHHHhcCCCCCcccC---CCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH
Q 036577 228 TIVALNLFEEMANGNGEIGVVCE---PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDW 304 (470)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 304 (470)
+++|++.|++..... + .+...|..+..+|...|++++|.+.|++..+.. +.+...+..+..++...|++
T Consensus 237 ~~~A~~~~~~al~~~-------p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~ 308 (474)
T 4abn_A 237 SQQALSAYAQAEKVD-------RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRL 308 (474)
T ss_dssp HHHHHHHHHHHHHHC-------GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-------CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHH
Confidence 999999999999865 4 588899999999999999999999999988763 33667788888888888888
Q ss_pred HHHHHHHHH
Q 036577 305 NEAKCLLIE 313 (470)
Q Consensus 305 ~~a~~~~~~ 313 (470)
++|...+.+
T Consensus 309 ~eAi~~~~~ 317 (474)
T 4abn_A 309 TSLLESKGK 317 (474)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHhcc
Confidence 888876543
No 70
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.55 E-value=4.4e-11 Score=117.43 Aligned_cols=396 Identities=10% Similarity=0.032 Sum_probs=258.4
Q ss_pred hhHHHHHhhhhccCChhhHHHHHHHHhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC---hH
Q 036577 48 TTAKLKESLRLTVKDRASLEKFLRERFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKH---YD 124 (470)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~ 124 (470)
....+...+.-.+.+......++. ... ..++++.|..+|+.++...|. ....|...+..-.+.++ ++
T Consensus 51 ~i~~lE~~l~~np~d~~~W~~yi~-~~~-------~~~~~~~aR~vyEraL~~fP~--~~~lW~~Yi~~E~~~~~~~~~~ 120 (679)
T 4e6h_A 51 VIGKLNDMIEEQPTDIFLYVKLLK-HHV-------SLKQWKQVYETFDKLHDRFPL--MANIWCMRLSLEFDKMEELDAA 120 (679)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHH-HHH-------HTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTC--CCCHH
T ss_pred HHHHHHHHHHHCcCCHHHHHHHHH-HHH-------hcCcHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHhhCCcchHH
Confidence 444556555544444433333322 221 235789999999999998886 88899999999989888 99
Q ss_pred HHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCc--------chHHHHHHHHHh-CCC-CC-CHHHHHHHHHHHHh---
Q 036577 125 TVLSLFKRLNSTG-LFPDLYTYNILINCFCKMGRV--------SPGFVVLGRILR-SCF-TP-DAVTFNSLIKGLCA--- 189 (470)
Q Consensus 125 ~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~--- 189 (470)
.+..+|++.+... .+|++..|...+.-..+.++. +...++|+..+. .|. .+ +...|...+.....
T Consensus 121 ~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~ 200 (679)
T 4e6h_A 121 VIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKP 200 (679)
T ss_dssp HHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccc
Confidence 9999999998763 138888888888776666654 234477777665 455 44 45788888876543
Q ss_pred ------cCCHHHHHHHHHHHHhcCCCCC--cchHHHHHHHHHh-------------cCChHHHHHHHHHHHhcCCCCCc-
Q 036577 190 ------ESRIMEAAALFTKLKAFGCEPN--VITYSTLINGLCR-------------TGHTIVALNLFEEMANGNGEIGV- 247 (470)
Q Consensus 190 ------~g~~~~a~~~~~~~~~~g~~~~--~~~~~~l~~~~~~-------------~g~~~~a~~~~~~~~~~~~~~~~- 247 (470)
.++++.+.++|++.+.. |.. ..+|......-.. ..++..|...+.++.........
T Consensus 201 ~~~~eeq~~~~~~R~iy~raL~i--P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~ 278 (679)
T 4e6h_A 201 VNKFEEQQRVQYIRKLYKTLLCQ--PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRN 278 (679)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTS--CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred cCcHHHHhHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhc
Confidence 34567788888887752 211 1222111100000 01112222223222111100000
Q ss_pred -----------------------------------------------------------ccCCCHhhHHHHHHHHHhCCC
Q 036577 248 -----------------------------------------------------------VCEPNTVTYTTIIDGLCKEGF 268 (470)
Q Consensus 248 -----------------------------------------------------------~~~~~~~~~~~l~~~~~~~g~ 268 (470)
..+-+...|...+..+...|+
T Consensus 279 ~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~ 358 (679)
T 4e6h_A 279 LPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNT 358 (679)
T ss_dssp CCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSC
T ss_pred cccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCc
Confidence 012233444555555566788
Q ss_pred HHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC---------CCC------------CHhHH
Q 036577 269 VDKAK-ELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQG---------VQP------------NVVTF 326 (470)
Q Consensus 269 ~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---------~~~------------~~~~~ 326 (470)
.++|. ++|+..... ++.+...|...+....+.|+++.|.++|+.+.+.. ..| ....|
T Consensus 359 ~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vW 437 (679)
T 4e6h_A 359 DSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVY 437 (679)
T ss_dssp CTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHH
Confidence 88886 999888764 44566677788888889999999999999887631 013 12367
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcC-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 036577 327 NVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLT-GRVNRAKELFVSMESNRCMHDVFSYSILINGYCK 405 (470)
Q Consensus 327 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 405 (470)
...+....+.|+.+.|..+|.++.+.........|...+..-.+. ++.+.|..+|+..++. ++.+...|...+.....
T Consensus 438 i~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~ 516 (679)
T 4e6h_A 438 CVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIY 516 (679)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHh
Confidence 777787888899999999999998761122334444444433444 4589999999988876 34577778888888888
Q ss_pred cCChhHHHHHHHHHHHCCCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036577 406 NKEIEGALSLYSEMLSKGIKP--DVVIYNTLFIGLFEIHQVERAFKLFDEMRRD 457 (470)
Q Consensus 406 ~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (470)
.|+.+.|..+|++.+.....+ ....|...+..-.+.|+.+.+.++.+++.+.
T Consensus 517 ~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 517 VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999998764322 3457888888888899999999999999873
No 71
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.55 E-value=2.1e-12 Score=106.57 Aligned_cols=172 Identities=17% Similarity=0.095 Sum_probs=152.6
Q ss_pred CCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 036577 251 PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIM 330 (470)
Q Consensus 251 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 330 (470)
.++.+|..+...|...|++++|++.|++..+.. +-+..++..+..+|.+.|++++|...+....... +.+...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 367889999999999999999999999998864 3478889999999999999999999999998875 55677888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChh
Q 036577 331 DELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIE 410 (470)
Q Consensus 331 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 410 (470)
..+...++++.|...+.+..+..+. +...+..+...+.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 8999999999999999999988654 78889999999999999999999999998865 458899999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCH
Q 036577 411 GALSLYSEMLSKGIKPDV 428 (470)
Q Consensus 411 ~A~~~~~~~~~~~~~p~~ 428 (470)
+|++.|++.++. .|+.
T Consensus 159 ~A~~~~~~al~~--~p~~ 174 (184)
T 3vtx_A 159 EAVKYFKKALEK--EEKK 174 (184)
T ss_dssp HHHHHHHHHHHT--THHH
T ss_pred HHHHHHHHHHhC--CccC
Confidence 999999999975 4443
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.53 E-value=8.4e-14 Score=125.28 Aligned_cols=252 Identities=13% Similarity=-0.003 Sum_probs=151.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-Cc
Q 036577 176 DAVTFNSLIKGLCAESRIMEAAALFTKLKAF-------GCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEI-GV 247 (470)
Q Consensus 176 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~ 247 (470)
+..++..+...+...|++++|..+++++.+. ..+....++..+...|...|++++|...++++....... +.
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4566777778888888888888888877653 223345667778888888888888888888877641000 00
Q ss_pred ccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC---
Q 036577 248 VCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE------NI-NPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ--- 317 (470)
Q Consensus 248 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--- 317 (470)
..+....++..+...+...|++++|.+.++++.+. +. +.....+..+...+...|++++|...++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 01345677888999999999999999999988753 11 223456777778888888888888888887654
Q ss_pred ---CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------CCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 036577 318 ---GVQP-NVVTFNVIMDELCKNGKMDEASRLLDLMIQIGV-------RPNAFVYNTLMDGFCLTGRVNRAKELFVSMES 386 (470)
Q Consensus 318 ---~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 386 (470)
+..| ....+..+..++...|++++|...++++.+... .+.......
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------------- 242 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM----------------------- 242 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH-----------------------
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH-----------------------
Confidence 1122 234566777777888888888888877765310 000000000
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 387 NRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 387 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
....+..+...+...+.+.+|...++...... ..+..++..+..+|.+.|++++|.+++++..+
T Consensus 243 -----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 243 -----HAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -----HHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11222333334445556666666666655421 12344666667777777777777777776654
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.53 E-value=6.7e-14 Score=125.95 Aligned_cols=176 Identities=14% Similarity=0.046 Sum_probs=135.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC------C
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNST-------GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS------C 172 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~ 172 (470)
...++..+...+...|++++|+.+|+++.+. ..+....++..+...+...|++++|...++++++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4677888888899999999999999888763 22344567888888899999999999988888763 2
Q ss_pred C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 036577 173 F-TPDAVTFNSLIKGLCAESRIMEAAALFTKLKAF------GC-EPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGE 244 (470)
Q Consensus 173 ~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------g~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 244 (470)
. +....++..+...|...|++++|...+++..+. +. +.....+..+...+...|++++|+++++++......
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 234567888999999999999999999988764 21 223556788889999999999999999998775100
Q ss_pred C-CcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 036577 245 I-GVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKD 281 (470)
Q Consensus 245 ~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 281 (470)
. +...+....++..+..++...|++++|.+.++++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0 000133456788889999999999999999998875
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.51 E-value=8.8e-12 Score=115.59 Aligned_cols=311 Identities=10% Similarity=-0.039 Sum_probs=181.4
Q ss_pred CHHHHHHHHHHH--HhcCChHHHHHHHHHHHhC--CCCCC--HHHHHHHHHH--HHhcCCcchHH---------HHHHHH
Q 036577 106 PVSSFNILFGCL--AKNKHYDTVLSLFKRLNST--GLFPD--LYTYNILINC--FCKMGRVSPGF---------VVLGRI 168 (470)
Q Consensus 106 ~~~~~~~l~~~~--~~~~~~~~A~~~~~~m~~~--~~~~~--~~~~~~li~~--~~~~g~~~~a~---------~~~~~~ 168 (470)
+..+-+.+-..| ...+++++|..+++++.+. .+..| ...|-.++.. ..-.+....+. +.++.+
T Consensus 9 ~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i 88 (378)
T 3q15_A 9 SSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETI 88 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHH
Confidence 334444444455 6789999999999987553 22223 3333444332 11223344444 666666
Q ss_pred HhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-C----CcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 036577 169 LRSCFTPDA----VTFNSLIKGLCAESRIMEAAALFTKLKAFGCE-P----NVITYSTLINGLCRTGHTIVALNLFEEMA 239 (470)
Q Consensus 169 ~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 239 (470)
.....+.+. ..+......+...|++++|+..|++..+.... + ...++..+...|...|++++|+..+++..
T Consensus 89 ~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al 168 (378)
T 3q15_A 89 ETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL 168 (378)
T ss_dssp HGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 542211111 12334556677899999999999998754211 1 24567888999999999999999999987
Q ss_pred hcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 036577 240 NGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE----NIN-PNVVTYNSLIHGFCYANDWNEAKCLLIEM 314 (470)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 314 (470)
...............+++.+..+|...|++++|.+.+++..+. +.. ....++..+..+|...|++++|...+++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a 248 (378)
T 3q15_A 169 DIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248 (378)
T ss_dssp HHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6532110000112456778888899999999999988887652 111 12345666677777777777777777776
Q ss_pred HH-----CCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CCHhHHHHHHHHHHcCCC---HHHHHHHHH
Q 036577 315 MD-----QGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVR----PNAFVYNTLMDGFCLTGR---VNRAKELFV 382 (470)
Q Consensus 315 ~~-----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~---~~~A~~~~~ 382 (470)
.+ .. +....++..+...+.+.|++++|...+++..+.... .....+..+...+...|+ +.+|...++
T Consensus 249 l~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~ 327 (378)
T 3q15_A 249 AKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE 327 (378)
T ss_dssp HHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 65 22 222455666666677777777777777766654211 112234444445555555 455555444
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 036577 383 SMESNRCMH-DVFSYSILINGYCKNKEIEGALSLYSEML 420 (470)
Q Consensus 383 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 420 (470)
.. +..+ ....+..+...|...|++++|...|++..
T Consensus 328 ~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 328 KK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 31 1111 22334455555556666666666555554
No 75
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.49 E-value=2.4e-10 Score=112.27 Aligned_cols=360 Identities=12% Similarity=0.031 Sum_probs=242.7
Q ss_pred hhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---cchHHH
Q 036577 87 PNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR---VSPGFV 163 (470)
Q Consensus 87 ~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~ 163 (470)
.++-+..|+..+..+|. +...|..++..+.+.+.++.+..+|+++... .+.....|...+..-.+.|+ ++.+.+
T Consensus 48 ~~d~i~~lE~~l~~np~--d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPT--DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CSCHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CHHHHHHHHHHHHHCcC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 45667788888888886 9999999999999999999999999999987 46778889999998888888 999999
Q ss_pred HHHHHHhCC-CCCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHh-cCC-CCC-cchHHHHHHHHH--------
Q 036577 164 VLGRILRSC-FTPDAVTFNSLIKGLCAESRI--------MEAAALFTKLKA-FGC-EPN-VITYSTLINGLC-------- 223 (470)
Q Consensus 164 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~l~~~~~-------- 223 (470)
+|++.+... .+|++..|...+....+.++. +.+.++|+.... .|. .++ ...|...+....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 999999864 148888999888877665553 344577877654 355 444 456777665543
Q ss_pred -hcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHh-------------CCCHHHHH----------------
Q 036577 224 -RTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCK-------------EGFVDKAK---------------- 273 (470)
Q Consensus 224 -~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~a~---------------- 273 (470)
..++.+.+..+|+++.... ...-..+|......-.. ..+++.|.
T Consensus 205 eeq~~~~~~R~iy~raL~iP------~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~ 278 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQP------MDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRN 278 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSC------CSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred HHHhHHHHHHHHHHHHHhCc------cHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhc
Confidence 2345677888998887532 11111222111100000 01111222
Q ss_pred ---------------------------------------------------HHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 036577 274 ---------------------------------------------------ELFLKMKDENINPNVVTYNSLIHGFCYAN 302 (470)
Q Consensus 274 ---------------------------------------------------~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 302 (470)
.+|+++... ++-+...|...+..+...|
T Consensus 279 ~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~ 357 (679)
T 4e6h_A 279 LPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKN 357 (679)
T ss_dssp CCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHS
T ss_pred cccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcC
Confidence 223332222 1223344444455555667
Q ss_pred CHHHHH-HHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---------CC------------CHhH
Q 036577 303 DWNEAK-CLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGV---------RP------------NAFV 360 (470)
Q Consensus 303 ~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---------~~------------~~~~ 360 (470)
+.++|. .+|++..... +.+...|-..+....+.|+++.|..+|+.+..... .| ...+
T Consensus 358 ~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~v 436 (679)
T 4e6h_A 358 TDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYV 436 (679)
T ss_dssp CCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHH
Confidence 777886 8888887653 55666677778888889999999999998876410 13 1346
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 036577 361 YNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKN-KEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLF 439 (470)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 439 (470)
|...+....+.|+.+.|+.+|.+.++.........|...+..-.+. ++.+.|.++|+..++. .+-+...|...+....
T Consensus 437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHH
Confidence 7777888788889999999999988751112334444333333444 4589999999998876 3335667778888888
Q ss_pred hcCCHHHHHHHHHHHHHcC
Q 036577 440 EIHQVERAFKLFDEMRRDG 458 (470)
Q Consensus 440 ~~g~~~~A~~~~~~m~~~g 458 (470)
..|+.+.|+.+|++.....
T Consensus 516 ~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTS
T ss_pred hCCCHHHHHHHHHHHHHhc
Confidence 8899999999999988743
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.49 E-value=1.3e-11 Score=114.50 Aligned_cols=313 Identities=9% Similarity=0.002 Sum_probs=217.1
Q ss_pred CCCHHHHHHHHHHH--HhcCCcchHHHHHHHHHhC--CC--CCCHHHHHHHHHH--HHhcCCHHHHH---------HHHH
Q 036577 139 FPDLYTYNILINCF--CKMGRVSPGFVVLGRILRS--CF--TPDAVTFNSLIKG--LCAESRIMEAA---------ALFT 201 (470)
Q Consensus 139 ~~~~~~~~~li~~~--~~~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~--~~~~g~~~~a~---------~~~~ 201 (470)
.|+..+-..+-..| ...+++++|.++++++.+. .. ..+...|-.++.. ....+.+..+. ..++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 45556666666666 7889999999999988662 22 2334444444443 11122222222 5566
Q ss_pred HHHhcCCCCCc----chHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHH
Q 036577 202 KLKAFGCEPNV----ITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFL 277 (470)
Q Consensus 202 ~~~~~g~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 277 (470)
.+.....+.+. ..+......+...|++++|+..|++........+. ......++..+...|...|+++.|...++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSD-DIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCC-hHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 55432111111 12333455677899999999999999865321100 11235678889999999999999999999
Q ss_pred HHHhC----C-CC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHHHcCCHHHHHHHH
Q 036577 278 KMKDE----N-IN-PNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ----GVQP-NVVTFNVIMDELCKNGKMDEASRLL 346 (470)
Q Consensus 278 ~~~~~----~-~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 346 (470)
+..+. + .. ....+++.+..+|...|++++|...+++..+. +..+ ...++..+..+|...|++++|...+
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 87653 1 11 12457788999999999999999999988753 2111 2346788899999999999999999
Q ss_pred HHHHH-----cCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHcCC---hhHHHH
Q 036577 347 DLMIQ-----IGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNR----CMHDVFSYSILINGYCKNKE---IEGALS 414 (470)
Q Consensus 347 ~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~A~~ 414 (470)
++..+ .... ...++..+...+.+.|++++|...+++..+.. .+.....+..+...+...|+ +++|+.
T Consensus 246 ~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~ 324 (378)
T 3q15_A 246 QKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324 (378)
T ss_dssp HHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 99887 4333 36788899999999999999999999987632 12234456667777777888 778888
Q ss_pred HHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 415 LYSEMLSKGIKPD-VVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 415 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
.+++. +..|+ ...+..+...|...|++++|.+.|++..+
T Consensus 325 ~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 325 YFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77763 33333 34667788999999999999999999874
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.47 E-value=3.9e-11 Score=111.00 Aligned_cols=55 Identities=13% Similarity=-0.016 Sum_probs=23.9
Q ss_pred HHHhcCCcchHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036577 151 CFCKMGRVSPGFVVLGRILRSCFTPDA----VTFNSLIKGLCAESRIMEAAALFTKLKA 205 (470)
Q Consensus 151 ~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 205 (470)
.+...|++++|...+++.+......+. .+++.+...+...|++++|.+.+++...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 81 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ 81 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 344455555555555554443211111 1233344444445555555555544443
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.47 E-value=4.4e-12 Score=104.40 Aligned_cols=161 Identities=14% Similarity=0.078 Sum_probs=83.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcC
Q 036577 292 NSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLT 371 (470)
Q Consensus 292 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 371 (470)
..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..++..+...
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHh
Confidence 333444444444444444444443332 223444444455555555555555555555444222 444555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 036577 372 GRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLF 451 (470)
Q Consensus 372 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 451 (470)
|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+
T Consensus 90 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555554432 2345555556666666666666666666655542 223455566666666666666666666
Q ss_pred HHHHH
Q 036577 452 DEMRR 456 (470)
Q Consensus 452 ~~m~~ 456 (470)
+++.+
T Consensus 168 ~~~~~ 172 (186)
T 3as5_A 168 KKANE 172 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.46 E-value=5.8e-11 Score=109.84 Aligned_cols=273 Identities=11% Similarity=-0.023 Sum_probs=155.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCcchHHHHHHHHHhCCC-CCC----HHHHHH
Q 036577 112 ILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLY----TYNILINCFCKMGRVSPGFVVLGRILRSCF-TPD----AVTFNS 182 (470)
Q Consensus 112 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~ 182 (470)
.....+...|++++|...+++.....-..+.. ++..+...+...|++++|...+++..+... ..+ ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445556677777777776665543112221 344555666667777777777666554210 011 233555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc----CCC--C-CcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhh
Q 036577 183 LIKGLCAESRIMEAAALFTKLKAF----GCE--P-NVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVT 255 (470)
Q Consensus 183 l~~~~~~~g~~~~a~~~~~~~~~~----g~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 255 (470)
+...+...|++++|...+++.... +.+ | ....+..+...+...|++++|...+++........+. .....+
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~ 176 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP--QQQLQC 176 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG--GGGHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc--HHHHHH
Confidence 666777778888887777776543 111 1 2234555667777788888888888877665432211 112345
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC--CHHHHH----HHHHHHHccCCHHHHHHHHHHHHHCCCCC---CHhHH
Q 036577 256 YTTIIDGLCKEGFVDKAKELFLKMKDENINP--NVVTYN----SLIHGFCYANDWNEAKCLLIEMMDQGVQP---NVVTF 326 (470)
Q Consensus 256 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~----~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~ 326 (470)
+..+...+...|++++|...+++.......+ ...... ..+..+...|++++|...+++.......+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 6667777777888888888887765421111 111111 22334667777887777777665432111 12234
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCH-hHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 036577 327 NVIMDELCKNGKMDEASRLLDLMIQI----GVRPNA-FVYNTLMDGFCLTGRVNRAKELFVSMES 386 (470)
Q Consensus 327 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 386 (470)
..+...+...|++++|...++..... +..++. ..+..+..++...|+.++|...+++...
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55666777777777777777766543 111112 2455556666777777777777766554
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.43 E-value=6.6e-12 Score=124.70 Aligned_cols=166 Identities=11% Similarity=0.042 Sum_probs=138.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIK 185 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (470)
++.+|+.+..++.+.|++++|++.|++.++.. +.+..++..+..+|.+.|++++|++.|++.++.. +.+..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 57888888999999999999999998888764 5567888888899999999999999998888864 446788888899
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHh
Q 036577 186 GLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCK 265 (470)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 265 (470)
+|...|++++|++.|++..+.. +-+...|..+..+|.+.|++++|++.|++..+.. +-+...+..+..++..
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-------P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-------PDFPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCChHHHhhhhhHHHh
Confidence 9999999999999998888763 3356788888888999999999999999988876 5577888888999999
Q ss_pred CCCHHHHHHHHHHHHh
Q 036577 266 EGFVDKAKELFLKMKD 281 (470)
Q Consensus 266 ~g~~~~a~~~~~~~~~ 281 (470)
.|++++|.+.++++.+
T Consensus 158 ~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 158 VCDWTDYDERMKKLVS 173 (723)
T ss_dssp TTCCTTHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 9998888888877654
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.42 E-value=9.5e-12 Score=123.56 Aligned_cols=168 Identities=12% Similarity=0.009 Sum_probs=124.8
Q ss_pred CCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 036577 250 EPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVI 329 (470)
Q Consensus 250 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 329 (470)
+.+...|+.+..++.+.|++++|++.|++..+.. +-+...|..+..+|.+.|++++|+..|++.++.. +-+...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4456778888888888888888888888877653 2356777777888888888888888888777764 4456677777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q 036577 330 MDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEI 409 (470)
Q Consensus 330 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 409 (470)
..++...|++++|++.|++.++.+.. +...|+.+..+|...|++++|++.|++.++.. +-+...|..+..+|...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence 77888888888888888877776544 56777777777778888888888887777653 33677777777777778888
Q ss_pred hHHHHHHHHHHH
Q 036577 410 EGALSLYSEMLS 421 (470)
Q Consensus 410 ~~A~~~~~~~~~ 421 (470)
++|.+.++++++
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888777777764
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.42 E-value=2.4e-11 Score=99.91 Aligned_cols=166 Identities=17% Similarity=0.047 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036577 107 VSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKG 186 (470)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (470)
...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4567777888888888888888888877654 4567788888888888888888888888887763 4567778888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhC
Q 036577 187 LCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKE 266 (470)
Q Consensus 187 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 266 (470)
+...|++++|.+.++++.... +.+...+..+...+...|++++|.+.++++.... +.+...+..+...+...
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~ 157 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-------PNEGKVHRAIAFSYEQM 157 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-------ccchHHHHHHHHHHHHc
Confidence 888888888888888887653 3456677778888888888888888888887765 45677788888888888
Q ss_pred CCHHHHHHHHHHHHhC
Q 036577 267 GFVDKAKELFLKMKDE 282 (470)
Q Consensus 267 g~~~~a~~~~~~~~~~ 282 (470)
|++++|.+.++.+.+.
T Consensus 158 ~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 158 GRHEEALPHFKKANEL 173 (186)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc
Confidence 8888888888877653
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.39 E-value=4.6e-11 Score=102.15 Aligned_cols=202 Identities=11% Similarity=-0.030 Sum_probs=157.0
Q ss_pred CCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 036577 250 EPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVI 329 (470)
Q Consensus 250 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 329 (470)
..|+..+......+...|++++|...|++..+...+++...+..+..++...|++++|+..+++..+.. +.+...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 456788899999999999999999999999887543677888889999999999999999999999874 4466788889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCH-------hHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHH
Q 036577 330 MDELCKNGKMDEASRLLDLMIQIGVRPNA-------FVYNTLMDGFCLTGRVNRAKELFVSMESNRCMH--DVFSYSILI 400 (470)
Q Consensus 330 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~ 400 (470)
..++...|++++|...+++..+..+. +. ..|..+...+...|++++|...|++.++.. +. +...|..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHH
Confidence 99999999999999999999987544 44 457888888999999999999999998864 33 467788888
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 036577 401 NGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTW 464 (470)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 464 (470)
.+|...|+ ..++++...+. .+...|.... ....|.+++|...+++..+ +.|+..
T Consensus 161 ~~~~~~~~-----~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~ 214 (228)
T 4i17_A 161 VLFYNNGA-----DVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRT 214 (228)
T ss_dssp HHHHHHHH-----HHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHHH-----HHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCH
Confidence 88865543 44455544322 2344444333 3345778999999999988 566644
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.38 E-value=1.1e-10 Score=99.88 Aligned_cols=154 Identities=12% Similarity=-0.044 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 036577 287 NVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMD 366 (470)
Q Consensus 287 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 366 (470)
++..+......+...|++++|+..|++..+...+++...+..+..++...|++++|...+++..+..+. +...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 445566666666666777777777766666542255555555666666667777777777666665433 4556666666
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HhHHHHHHH
Q 036577 367 GFCLTGRVNRAKELFVSMESNRCMHDV-------FSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD---VVIYNTLFI 436 (470)
Q Consensus 367 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~ 436 (470)
++...|++++|...+++..+.. +.+. ..|..+...+...|++++|++.|+++++. .|+ ...|..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 6666677777777666666543 2233 44666666666667777777777666643 343 345555666
Q ss_pred HHHhcCCH
Q 036577 437 GLFEIHQV 444 (470)
Q Consensus 437 ~~~~~g~~ 444 (470)
++...|+.
T Consensus 162 ~~~~~~~~ 169 (228)
T 4i17_A 162 LFYNNGAD 169 (228)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555543
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.34 E-value=1.8e-11 Score=108.15 Aligned_cols=235 Identities=12% Similarity=-0.006 Sum_probs=163.0
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCC-cccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC------C-CCCCHHHHHH
Q 036577 222 LCRTGHTIVALNLFEEMANGNGEIG-VVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE------N-INPNVVTYNS 293 (470)
Q Consensus 222 ~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~ 293 (470)
....|++++|+.++++......... ...+....++..+...+...|++++|...++++... + .+....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 3457899999999999877431100 001234667888999999999999999999998753 1 1234567888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHC------C-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC-CHh
Q 036577 294 LIHGFCYANDWNEAKCLLIEMMDQ------G-VQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQI------GVRP-NAF 359 (470)
Q Consensus 294 li~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~ 359 (470)
+...|...|++++|...+.+..+. . .+.....+..+...+...|++++|...++++.+. +..| ...
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 999999999999999999998764 1 1234567888889999999999999999998875 1122 356
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHC-------CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHH--HC-C-CCC-
Q 036577 360 VYNTLMDGFCLTGRVNRAKELFVSMESN-------RC-MHDVFSYSILINGYCKNKEIEGALSLYSEML--SK-G-IKP- 426 (470)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~-~~p- 426 (470)
++..+...+...|++++|...++++.+. .. ......|..+...+...+....+..+..... +. + ..|
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH
Confidence 7888999999999999999999988753 11 1233344444444444444333333221111 11 1 112
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 427 DVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 427 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
...++..+...|...|++++|.+++++..+
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 244788899999999999999999999875
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.32 E-value=1.7e-11 Score=108.32 Aligned_cols=241 Identities=14% Similarity=0.054 Sum_probs=136.9
Q ss_pred ccCChhHHHHHHHHHHhcC------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 036577 83 TTITPNEAFCIFDYMLNMR------PSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156 (470)
Q Consensus 83 ~~~~~~~A~~~f~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 156 (470)
..|++++|+.+|+++++.. ..+....++..+...+...|++++|+..++++.+..
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------------- 73 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIR------------------- 73 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH-------------------
Confidence 4456666666666655421 111245667777777777777777777777665420
Q ss_pred CcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------C-CCCCcchHHHHHHHHHhcCChH
Q 036577 157 RVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAF------G-CEPNVITYSTLINGLCRTGHTI 229 (470)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------g-~~~~~~~~~~l~~~~~~~g~~~ 229 (470)
+.......+....++..+...|...|++++|.+.+++.... . .+....++..+...+...|+++
T Consensus 74 ---------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 144 (283)
T 3edt_B 74 ---------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAE 144 (283)
T ss_dssp ---------HHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred ---------HHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHH
Confidence 00000000112344555555566666666666665555432 1 1223455666777777777887
Q ss_pred HHHHHHHHHHhcCCCC-CcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHc
Q 036577 230 VALNLFEEMANGNGEI-GVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE-------NINP-NVVTYNSLIHGFCY 300 (470)
Q Consensus 230 ~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~-~~~~~~~li~~~~~ 300 (470)
+|...++++....... +...+....++..+..++...|++++|.+.++++... ...+ ....+..+...+..
T Consensus 145 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (283)
T 3edt_B 145 EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREES 224 (283)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhc
Confidence 7777777776541000 0001334678889999999999999999999988753 1111 22333333333333
Q ss_pred cCCHH------HHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036577 301 ANDWN------EAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQI 352 (470)
Q Consensus 301 ~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 352 (470)
.+... .+...+..... ..+....++..+..+|...|++++|...+++..+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 225 KDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp TCCCCC------------CCCC-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33322 22222221111 11223457888999999999999999999998764
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.29 E-value=5.9e-09 Score=91.11 Aligned_cols=244 Identities=10% Similarity=0.011 Sum_probs=122.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 036577 115 GCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIM 194 (470)
Q Consensus 115 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 194 (470)
+-..-.|++..++.-..++ .-.........+.+++...|+++... .-.|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~~~-~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQFL-DTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHHHH-TTT---
T ss_pred HHHHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHHHh-ccc---
Confidence 3344467777776632222 11222333444556677777665421 1123333333333222 211
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHH
Q 036577 195 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKE 274 (470)
Q Consensus 195 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 274 (470)
|+..|+++...+ +++..++..+..++...|++++|++++.+....+. ..-+...+..++..+.+.|+.+.|.+
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~-----~~~~lea~~l~vqi~L~~~r~d~A~k 157 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDE-----AEGTTELLLLAIEVALLNNNVSTAST 157 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC-----STTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-----CcCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 555666655443 23444445566666666777777777766654431 01345566666666666777777777
Q ss_pred HHHHHHhCCCCC-----CHHHHHHHHHHH--Hc--cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHH
Q 036577 275 LFLKMKDENINP-----NVVTYNSLIHGF--CY--ANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRL 345 (470)
Q Consensus 275 ~~~~~~~~~~~~-----~~~~~~~li~~~--~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 345 (470)
.+++|.+. .| +..+...++.++ .. .+++.+|..+|+++.+. .|+..+...++.++.+.|++++|...
T Consensus 158 ~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~ 233 (310)
T 3mv2_B 158 IFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGI 233 (310)
T ss_dssp HHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHH
Confidence 77666553 33 234444444442 22 22666666666666544 34422223333356666666666666
Q ss_pred HHHHHHcC---------CCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 036577 346 LDLMIQIG---------VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESN 387 (470)
Q Consensus 346 ~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (470)
++.+.+.. -+-|+.++..++......|+ +|.++++++.+.
T Consensus 234 L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 234 VELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 66544320 01244455444444444554 556666666554
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.26 E-value=5.3e-10 Score=99.44 Aligned_cols=237 Identities=10% Similarity=0.019 Sum_probs=151.2
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHH
Q 036577 89 EAFCIFDYMLNMRPSPPPVSSFNILFGCLAKN---KHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVL 165 (470)
Q Consensus 89 ~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 165 (470)
+|.+++.+..+.-+. +...| .+. +. +++++|...|++. ...|...|++++|...|
T Consensus 3 ~a~~~~~~a~k~~~~--~~~~~-~~~----~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~ 60 (292)
T 1qqe_A 3 DPVELLKRAEKKGVP--SSGFM-KLF----SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSF 60 (292)
T ss_dssp CHHHHHHHHHHHSSC--CCTHH-HHH----SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHH
T ss_pred cHHHHHHHHHHHhCc--CCCcc-hhc----CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHH
Confidence 466666666665443 21222 221 22 2488888887776 34567788888888888
Q ss_pred HHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCC-CcchHHHHHHHHHhc-CChHHHHHH
Q 036577 166 GRILRS----CFTPD-AVTFNSLIKGLCAESRIMEAAALFTKLKAFG----CEP-NVITYSTLINGLCRT-GHTIVALNL 234 (470)
Q Consensus 166 ~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g----~~~-~~~~~~~l~~~~~~~-g~~~~a~~~ 234 (470)
++..+. |.++. ..+|+.+..+|...|++++|+..|++..+.. -.. ...++..+...|... |++++|+..
T Consensus 61 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~ 140 (292)
T 1qqe_A 61 LKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDC 140 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 877653 21222 4678889999999999999999998876531 110 135788888999996 999999999
Q ss_pred HHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHccCCHHHHH
Q 036577 235 FEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV------VTYNSLIHGFCYANDWNEAK 308 (470)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~ 308 (470)
|++.....+..+. ......++..+...+.+.|++++|+..|++.......... ..|..+..++...|++++|.
T Consensus 141 ~~~Al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 219 (292)
T 1qqe_A 141 YELAGEWYAQDQS-VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAA 219 (292)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9998875410000 0001356788888899999999999999888875332221 14566677778888888888
Q ss_pred HHHHHHHHCCCCCCH------hHHHHHHHHHH--HcCCHHHHHHHHHHHH
Q 036577 309 CLLIEMMDQGVQPNV------VTFNVIMDELC--KNGKMDEASRLLDLMI 350 (470)
Q Consensus 309 ~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~g~~~~a~~~~~~~~ 350 (470)
..|++..+. .|+. ..+..++.++. ..+++++|+..|+.+.
T Consensus 220 ~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 220 RTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 888877654 2221 12333344443 2344556665555443
No 89
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.24 E-value=3.3e-08 Score=94.21 Aligned_cols=124 Identities=10% Similarity=-0.017 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036577 325 TFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTG-RVNRAKELFVSMESNRCMHDVFSYSILINGY 403 (470)
Q Consensus 325 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (470)
.|...+....+.++.+.|..+|+++ +. ...+...|...+..-...+ +.+.|..+|+...+.. +.+...|...++..
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e 364 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 3444455555677788898999888 32 2234445543333322333 6899999998887753 33455667777777
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 404 CKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
...|+.+.|..+|+++. .....|...+.--...|+.+.+.++++++.+
T Consensus 365 ~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88899999999998872 2567788888777788999999998888873
No 90
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.21 E-value=5.4e-10 Score=93.90 Aligned_cols=170 Identities=13% Similarity=0.099 Sum_probs=91.4
Q ss_pred HhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHH----------------HHHHHHccCCHHHHHHHHHHHHH
Q 036577 253 TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNS----------------LIHGFCYANDWNEAKCLLIEMMD 316 (470)
Q Consensus 253 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~~~~~~a~~~~~~~~~ 316 (470)
...+......+...|++++|...|++..... +.+...|.. +..+|.+.|++++|+..|++..+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344455666777888888888888877652 113344444 55556666666666666666655
Q ss_pred CCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCC--HHHHHHHHHHHHHCCCCCCHH
Q 036577 317 QGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGR--VNRAKELFVSMESNRCMHDVF 394 (470)
Q Consensus 317 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~ 394 (470)
.. +.+...+..+..++...|++++|...|+++++..+. +...+..+..+|...|+ .+.+...++.... ..|...
T Consensus 83 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 158 (208)
T 3urz_A 83 KA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQY 158 (208)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHH
T ss_pred HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhH
Confidence 53 334555666666666666666666666666665433 45555555555544332 2333334433322 122222
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHh
Q 036577 395 SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVV 429 (470)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 429 (470)
.+.....++...|++++|+..|++.++. .|+..
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~ 191 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTE 191 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHH
Confidence 3333444455556666666666666533 44443
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.21 E-value=3.8e-10 Score=100.39 Aligned_cols=238 Identities=14% Similarity=0.036 Sum_probs=168.2
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhc--C-ChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHH
Q 036577 195 EAAALFTKLKAFGCEPNVITYSTLINGLCRT--G-HTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDK 271 (470)
Q Consensus 195 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~--g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 271 (470)
+|.+++++..+. .++....| . +.+. + ++++|...|++. +..|...|++++
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~----~~~~~~~~~~~~A~~~~~~a---------------------~~~~~~~g~~~~ 55 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-K----LFSGSDSYKFEEAADLCVQA---------------------ATIYRLRKELNL 55 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-H----HHSCCSHHHHHHHHHHHHHH---------------------HHHHHHTTCTHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-h----hcCCCCCccHHHHHHHHHHH---------------------HHHHHHcCCHHH
Confidence 466677776654 22222222 2 2233 2 478888887776 235678899999
Q ss_pred HHHHHHHHHhC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHHHc-CCHH
Q 036577 272 AKELFLKMKDE----NINP-NVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ----GVQP-NVVTFNVIMDELCKN-GKMD 340 (470)
Q Consensus 272 a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~-g~~~ 340 (470)
|.+.|++.... |.++ ...+|+.+..+|.+.|++++|+..+++..+. |... ...++..+..+|... |+++
T Consensus 56 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~ 135 (292)
T 1qqe_A 56 AGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYA 135 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHH
Confidence 99999887653 2222 2568899999999999999999999988753 2111 135788889999996 9999
Q ss_pred HHHHHHHHHHHcCCCC-C----HhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCh
Q 036577 341 EASRLLDLMIQIGVRP-N----AFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDV------FSYSILINGYCKNKEI 409 (470)
Q Consensus 341 ~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~ 409 (470)
+|+..+++..+..... + ..++..++..+...|++++|...|++..+....... ..|..+..++...|++
T Consensus 136 ~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 215 (292)
T 1qqe_A 136 KAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA 215 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCH
Confidence 9999999988752211 1 356888999999999999999999999886432221 2678888899999999
Q ss_pred hHHHHHHHHHHHCCCCCCH------hHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCh
Q 036577 410 EGALSLYSEMLSKGIKPDV------VIYNTLFIGLF--EIHQVERAFKLFDEMRRDGVAADT 463 (470)
Q Consensus 410 ~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~--~~g~~~~A~~~~~~m~~~g~~p~~ 463 (470)
++|+..|++.++. .|+. ..+..++.++. ..+++++|++.|+++.. +.|+.
T Consensus 216 ~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~--l~~~~ 273 (292)
T 1qqe_A 216 VAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR--LDKWK 273 (292)
T ss_dssp HHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC--CCHHH
T ss_pred HHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc--cHHHH
Confidence 9999999998853 3332 23445566665 45778999888877654 44443
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.21 E-value=4.2e-09 Score=92.03 Aligned_cols=241 Identities=10% Similarity=-0.023 Sum_probs=143.6
Q ss_pred HHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 036577 152 FCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVA 231 (470)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a 231 (470)
..-.|++..++.- ..+.........-..+.++|...|+++.. ..-.|....+..+. .|...+ |
T Consensus 23 ~fy~G~yq~~i~e---~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la-~~~~~~----a 85 (310)
T 3mv2_B 23 NYYTGNFVQCLQE---IEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYV-QFLDTK----N 85 (310)
T ss_dssp HHTTTCHHHHTHH---HHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHH-HHHTTT----C
T ss_pred HHHhhHHHHHHHH---HHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHH-HHhccc----H
Confidence 3456777766652 33222122233334455777777766531 11122222333332 233322 6
Q ss_pred HHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHccCCHHHHHHH
Q 036577 232 LNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENI-NPNVVTYNSLIHGFCYANDWNEAKCL 310 (470)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~ 310 (470)
+..|++....+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.
T Consensus 86 ~~~l~~l~~~~-------~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~ 158 (310)
T 3mv2_B 86 IEELENLLKDK-------QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTI 158 (310)
T ss_dssp CHHHHHTTTTS-------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcC-------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 66677666543 34455556777778888888888888887766542 13566677777888888888888888
Q ss_pred HHHHHHCCCCC-----CHhHHHHHHHHH--HHcC--CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHH
Q 036577 311 LIEMMDQGVQP-----NVVTFNVIMDEL--CKNG--KMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELF 381 (470)
Q Consensus 311 ~~~~~~~~~~~-----~~~~~~~l~~~~--~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 381 (470)
+++|.+. .| +..+...++.++ ...| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|++.+
T Consensus 159 l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 159 FDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIV 234 (310)
T ss_dssp HHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHH
Confidence 8888765 45 244555555553 2233 788888888887654 344333344444777788888888888
Q ss_pred HHHHHCC---------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 382 VSMESNR---------CMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 382 ~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
+.+.+.. -+.+..++..+|.+....|+ +|.++++++.+.
T Consensus 235 ~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 235 ELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 7655421 03366666566666666676 777888888765
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.21 E-value=1.2e-09 Score=84.32 Aligned_cols=128 Identities=16% Similarity=0.229 Sum_probs=80.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 036577 326 FNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCK 405 (470)
Q Consensus 326 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 405 (470)
+..+...+...|++++|..+++++.+.+.. +...+..++..+...|++++|...++++.... +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 445555666666666666666666655432 45556666666666666666666666665543 3355566666666777
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 406 NKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 406 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
.|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 777777777777666542 22455666666777777777777777777665
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.20 E-value=1.1e-10 Score=116.31 Aligned_cols=174 Identities=9% Similarity=-0.076 Sum_probs=148.7
Q ss_pred cccCChhHHHHHHHHHH--------hcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036577 82 ITTITPNEAFCIFDYML--------NMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153 (470)
Q Consensus 82 ~~~~~~~~A~~~f~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 153 (470)
...|++++|++.|+.++ +..|. +...|..+...+.+.|++++|++.|+++.+.+ +.+...|..+..++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE--SVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT--CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc--chhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHH
Confidence 56789999999999999 66665 78889999999999999999999999998875 667889999999999
Q ss_pred hcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHH
Q 036577 154 KMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALN 233 (470)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~ 233 (470)
..|++++|.+.|++.++.. +.+...|..+..+|.+.|++++ ++.|++..+.. +.+...|..+..++.+.|++++|++
T Consensus 479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999874 4567889999999999999999 99999998864 3457789999999999999999999
Q ss_pred HHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCC
Q 036577 234 LFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGF 268 (470)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 268 (470)
.|+++.+.+ +.+...+..+..++...++
T Consensus 556 ~~~~al~l~-------P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTS-------RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTS-------TTHHHHHHHHHHHTC----
T ss_pred HHHhhcccC-------cccHHHHHHHHHHHHccCC
Confidence 999998765 4456778788887766554
No 95
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.18 E-value=1.6e-08 Score=89.21 Aligned_cols=231 Identities=12% Similarity=0.003 Sum_probs=179.2
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----Hhc---C
Q 036577 86 TPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNK--HYDTVLSLFKRLNSTGLFPDLYTYNILINCF----CKM---G 156 (470)
Q Consensus 86 ~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~----~~~---g 156 (470)
..++|+.+++.++..+|. ...+|+.-..++...| +++++++.++.+...+ +.+..+|+.-...+ ... +
T Consensus 48 ~s~~aL~~t~~~L~~nP~--~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGINELAS--HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHHCcH--HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 347899999999999997 8999999999999999 9999999999998875 55666777666555 555 7
Q ss_pred CcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC------h
Q 036577 157 RVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIM--EAAALFTKLKAFGCEPNVITYSTLINGLCRTGH------T 228 (470)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~------~ 228 (470)
++++++++++.+++.. +-+..+|+.-.-++.+.|.++ ++++.++++.+.. +.|..+|+.....+...|. +
T Consensus 125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 8899999999999874 568888988888888888888 9999999998864 4577788777777777776 8
Q ss_pred HHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHccCCHH
Q 036577 229 IVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDK-AKELFLKMKDEN--INPNVVTYNSLIHGFCYANDWN 305 (470)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~ 305 (470)
+++++.++.+...+ +-|...|+.+...+.+.|+... +..+.+++...+ -+.+...+..+...|.+.|+.+
T Consensus 203 ~eEl~~~~~aI~~~-------p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 203 DEELNYVKDKIVKC-------PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp HHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhC-------CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 88999999988876 6788888888888888887444 445666555432 1346777788888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHH
Q 036577 306 EAKCLLIEMMDQGVQPNVVTFNV 328 (470)
Q Consensus 306 ~a~~~~~~~~~~~~~~~~~~~~~ 328 (470)
+|.++++.+.+.--+....-|+.
T Consensus 276 ~A~~~~~~l~~~~Dpir~~yW~~ 298 (306)
T 3dra_A 276 ESRTVYDLLKSKYNPIRSNFWDY 298 (306)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHHHhccChHHHHHHHH
Confidence 88888888775321334444443
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.18 E-value=1.7e-09 Score=94.47 Aligned_cols=172 Identities=9% Similarity=-0.049 Sum_probs=127.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCcchHHHHHHHHHhCCC--CCCHHH
Q 036577 105 PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPD---LYTYNILINCFCKMGRVSPGFVVLGRILRSCF--TPDAVT 179 (470)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~ 179 (470)
.++..+-.+...+.+.|++++|+..|+++.+.. +.+ ...+..+..++.+.|++++|...|+++++... +....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 366777777888888888888888888887763 223 56777888888888888888888888887521 122456
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCCCcchH-----------------HHHHHHHHhcCChHHHHHH
Q 036577 180 FNSLIKGLCA--------ESRIMEAAALFTKLKAFGCEPNVITY-----------------STLINGLCRTGHTIVALNL 234 (470)
Q Consensus 180 ~~~l~~~~~~--------~g~~~~a~~~~~~~~~~g~~~~~~~~-----------------~~l~~~~~~~g~~~~a~~~ 234 (470)
+..+..++.. .|++++|+..|+++.+.. +.+.... ..+...|.+.|++++|+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 6777777877 888888888888887653 2223333 4567889999999999999
Q ss_pred HHHHHhcCCCCCcccCCCHhhHHHHHHHHHhC----------CCHHHHHHHHHHHHhC
Q 036577 235 FEEMANGNGEIGVVCEPNTVTYTTIIDGLCKE----------GFVDKAKELFLKMKDE 282 (470)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~ 282 (470)
|+++....+. .......+..+..+|... |++++|...|+.+.+.
T Consensus 171 ~~~~l~~~p~----~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 171 YEAVFDAYPD----TPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHCTT----STTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCC----CchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 9999887531 111345777888888866 8888999999888775
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.18 E-value=2.4e-10 Score=96.07 Aligned_cols=158 Identities=12% Similarity=0.014 Sum_probs=127.1
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHHHHHH----------------HHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 036577 79 EGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNI----------------LFGCLAKNKHYDTVLSLFKRLNSTGLFPDL 142 (470)
Q Consensus 79 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~ 142 (470)
......|++++|+..|+.+++..|. +...|.. +..++.+.|++++|+..|++..+.. +.+.
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~ 88 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIALNID--RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNV 88 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHH--HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC--ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCH
Confidence 3445678999999999999998876 6777887 9999999999999999999999875 6688
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 036577 143 YTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESR--IMEAAALFTKLKAFGCEPNVITYSTLIN 220 (470)
Q Consensus 143 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 220 (470)
..+..+..++...|++++|...|+++++.. +.+..++..+...|...|+ .+.+...++.... ..|....+.....
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~ 165 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGL 165 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHH
Confidence 999999999999999999999999999874 5578889999988876654 4455666666543 2233334555666
Q ss_pred HHHhcCChHHHHHHHHHHHhcC
Q 036577 221 GLCRTGHTIVALNLFEEMANGN 242 (470)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~~~~~ 242 (470)
++...|++++|+..|++..+..
T Consensus 166 ~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 166 SKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 7778899999999999998754
No 98
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.17 E-value=2.6e-09 Score=82.29 Aligned_cols=130 Identities=17% Similarity=0.251 Sum_probs=84.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 036577 290 TYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFC 369 (470)
Q Consensus 290 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 369 (470)
.+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.+.. +...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 34455566666666666666666665543 334555666666666677777777777776665432 4556666677777
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 370 LTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 370 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
..|++++|...++++.+.. +.+...+..++.++...|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7777777777777766543 335666677777777777777777777776653
No 99
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.16 E-value=1.9e-09 Score=94.20 Aligned_cols=64 Identities=9% Similarity=0.081 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 036577 177 AVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPN---VITYSTLINGLCRTGHTIVALNLFEEMANG 241 (470)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 241 (470)
...+..+...+.+.|++++|+..|+++.+.. +.+ ...+..+..++.+.|++++|+..|+++...
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 81 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI 81 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 3344444444444555555555555444421 112 233444444444444455554444444443
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.14 E-value=8.1e-09 Score=86.91 Aligned_cols=180 Identities=11% Similarity=0.043 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcC----CHHHHHHH
Q 036577 270 DKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNG----KMDEASRL 345 (470)
Q Consensus 270 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~ 345 (470)
.+|.+.|++..+.| +...+..+...|...+++++|...|++..+.| +...+..+...|.. + ++++|...
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35677787777764 77788888888888899999999999988865 56667777777777 6 88999999
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----cCChhHHHHHH
Q 036577 346 LDLMIQIGVRPNAFVYNTLMDGFCL----TGRVNRAKELFVSMESNRCM-HDVFSYSILINGYCK----NKEIEGALSLY 416 (470)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~ 416 (470)
|++..+.+ +...+..|...|.. .+++++|...|++..+.+.. .+...+..|...|.. .+++++|+.+|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99987764 56777788888877 78899999999988876521 126788888888888 78899999999
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcCCCC
Q 036577 417 SEMLSKGIKPDVVIYNTLFIGLFEI-H-----QVERAFKLFDEMRRDGVAA 461 (470)
Q Consensus 417 ~~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~g~~p 461 (470)
++..+. ..+...+..|...|... | +.++|.++|++..+.|...
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence 998876 23445666777777653 3 8999999999988877543
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.13 E-value=1.3e-09 Score=106.66 Aligned_cols=154 Identities=12% Similarity=-0.045 Sum_probs=122.3
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 036577 84 TITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFV 163 (470)
Q Consensus 84 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 163 (470)
.|++++|+..|+++++..|. +...|..+...+.+.|++++|++.|++..+.. +.+...+..+..++...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ--DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp -------------------C--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 46889999999999998876 88999999999999999999999999999875 5678899999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc---CChHHHHHHHHHHHh
Q 036577 164 VLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRT---GHTIVALNLFEEMAN 240 (470)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~ 240 (470)
.+++.++.. +.+...+..+..+|.+.|++++|.+.|++..+.. +.+...+..+...+... |+.++|.+.+++..+
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999999874 5568899999999999999999999999998864 34567888899999999 999999999999988
Q ss_pred cC
Q 036577 241 GN 242 (470)
Q Consensus 241 ~~ 242 (470)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 76
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.13 E-value=1.1e-09 Score=109.19 Aligned_cols=174 Identities=8% Similarity=-0.085 Sum_probs=133.6
Q ss_pred HhcCChHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 036577 118 AKNKHYDTVLSLFKRLN--------STGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCA 189 (470)
Q Consensus 118 ~~~~~~~~A~~~~~~m~--------~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (470)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|.+.++++++.. +.+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67888999999998887 432 4566788888888888899999999888888764 4567788888888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCH
Q 036577 190 ESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFV 269 (470)
Q Consensus 190 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 269 (470)
.|++++|++.|++..+.. +.+...|..+..++.+.|++++ ++.|++..+.+ +.+...|..+..++.+.|++
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-------P~~~~a~~~lg~~~~~~g~~ 550 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-------DGVISAAFGLARARSAEGDR 550 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-------CchHHHHHHHHHHHHHcCCH
Confidence 899999999998888763 3356778888888888888888 88888888776 55777888888888888999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 036577 270 DKAKELFLKMKDENINPNVVTYNSLIHGFCYAND 303 (470)
Q Consensus 270 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 303 (470)
++|.+.|+++.+.+ +.+...+..+..++...++
T Consensus 551 ~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 551 VGAVRTLDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 99988888887653 1235566666666655444
No 103
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.13 E-value=3e-10 Score=89.92 Aligned_cols=146 Identities=9% Similarity=-0.075 Sum_probs=118.4
Q ss_pred CCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 036577 77 SGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156 (470)
Q Consensus 77 ~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 156 (470)
.|..+...|++++|+..|.......|. +...+..+...|.+.|++++|++.|++..+.. +.+..+|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~--~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQ--KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHH--HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 355667788999999999999876655 66778889999999999999999999998875 668899999999999999
Q ss_pred CcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 036577 157 RVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAAL-FTKLKAFGCEPNVITYSTLINGLCRTGH 227 (470)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 227 (470)
++++|...|++.++.. +.+..+|..+...|.+.|++++|.+. +++..+.. |-+..+|......+...|+
T Consensus 80 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 9999999999999874 45788999999999999999876655 57777653 3356667766666666664
No 104
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.13 E-value=1.2e-07 Score=83.73 Aligned_cols=217 Identities=9% Similarity=0.041 Sum_probs=132.3
Q ss_pred chHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCcchHHHHHHHH----Hhc---CChH
Q 036577 159 SPGFVVLGRILRSCFTPDAVTFNSLIKGLCAES--RIMEAAALFTKLKAFGCEPNVITYSTLINGL----CRT---GHTI 229 (470)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~----~~~---g~~~ 229 (470)
++|++.++.++..+ +.+..+|+.-...+...| +++++++.++.+.... +-+..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 35555565555543 334455665555565555 7777777777776653 23445555444443 334 6788
Q ss_pred HHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC----
Q 036577 230 VALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVD--KAKELFLKMKDENINPNVVTYNSLIHGFCYAND---- 303 (470)
Q Consensus 230 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---- 303 (470)
+++++++.+.+.+ +.+..+|+.-.-++.+.|.++ ++++.++++.+.+. -|...|+.-.......+.
T Consensus 128 ~EL~~~~~~l~~~-------pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 128 REFDILEAMLSSD-------PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp HHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCH
T ss_pred HHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchh
Confidence 9999999998876 678888888888888888887 88888888887653 377777766666666555
Q ss_pred --HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHH-HHHHHHHHHHcC--CCCCHhHHHHHHHHHHcCCCHHHHH
Q 036577 304 --WNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDE-ASRLLDLMIQIG--VRPNAFVYNTLMDGFCLTGRVNRAK 378 (470)
Q Consensus 304 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 378 (470)
++++++.+.+++... +-|...|+.....+.+.|+... +..+...+...+ -..+...+..++.+|.+.|+.++|.
T Consensus 200 ~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 566666666665554 4455666666555555555322 333444433322 0124444555555555555555555
Q ss_pred HHHHHHHH
Q 036577 379 ELFVSMES 386 (470)
Q Consensus 379 ~~~~~~~~ 386 (470)
++++.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555544
No 105
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.11 E-value=6.8e-10 Score=87.81 Aligned_cols=145 Identities=10% Similarity=-0.074 Sum_probs=99.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCH
Q 036577 295 IHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRV 374 (470)
Q Consensus 295 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 374 (470)
...+...|++++|+..+....... +.+...+..+...|.+.|++++|+..|++.++..+. +..+|..+..+|...|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCch
Confidence 344556677778877777765442 223445566777888888888888888888877554 677788888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHH-HHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 036577 375 NRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSL-YSEMLSKGIKPDVVIYNTLFIGLFEIHQ 443 (470)
Q Consensus 375 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 443 (470)
++|...|++.++.. +-+...|..+..+|.+.|++++|.+. +++.++.... +..+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 88888888877754 33677788888888888887776654 4777654322 45566655566656554
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.10 E-value=1e-09 Score=89.45 Aligned_cols=155 Identities=12% Similarity=0.051 Sum_probs=125.1
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCcc
Q 036577 81 DITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINC-FCKMGRVS 159 (470)
Q Consensus 81 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~ 159 (470)
+...|++++|...|+.+++..|. +...|..+..++.+.|++++|+..|++..+.. |+...+..+... +...+...
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~ 91 (176)
T 2r5s_A 16 LLQQGEHAQALNVIQTLSDELQS--RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAES 91 (176)
T ss_dssp HHHTTCHHHHHHHHHTSCHHHHT--SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHcCCHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcccc
Confidence 34568999999999999998887 89999999999999999999999999987764 355444333322 22334455
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHH
Q 036577 160 PGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEP-NVITYSTLINGLCRTGHTIVALNLFEEM 238 (470)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 238 (470)
.|...+++.++.. +.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|...|++.
T Consensus 92 ~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 92 PELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 6889999988864 4568899999999999999999999999998864222 2558889999999999999999999987
Q ss_pred Hh
Q 036577 239 AN 240 (470)
Q Consensus 239 ~~ 240 (470)
..
T Consensus 171 l~ 172 (176)
T 2r5s_A 171 LY 172 (176)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 107
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.08 E-value=2.5e-08 Score=83.85 Aligned_cols=60 Identities=18% Similarity=0.019 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 036577 176 DAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTG----HTIVALNLFEEMA 239 (470)
Q Consensus 176 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~ 239 (470)
+...+..|...|...+++++|++.|++..+.| +...+..+...|.. + ++++|.++|++..
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 33444444444444444444444444444432 23333334333333 3 4444444444443
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.06 E-value=3.1e-09 Score=86.60 Aligned_cols=78 Identities=15% Similarity=0.034 Sum_probs=41.7
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 036577 342 ASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMH-DVFSYSILINGYCKNKEIEGALSLYSEML 420 (470)
Q Consensus 342 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 420 (470)
|...+++..+..+. +...+..+..++...|++++|...|+++.+....+ +...+..+..++...|+.++|...|++.+
T Consensus 93 a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 45555555554322 45555555555556666666666665555543221 23455555556666666666666555544
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.05 E-value=3e-08 Score=84.35 Aligned_cols=186 Identities=8% Similarity=-0.062 Sum_probs=117.0
Q ss_pred CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH---hHH
Q 036577 252 NTVTYTTIIDGLCKEGFVDKAKELFLKMKDENIN-P-NVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNV---VTF 326 (470)
Q Consensus 252 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 326 (470)
+...+..+...+.+.|++++|...|+.+...... + ....+..+..+|.+.|++++|+..|+++.+.. +.+. ..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHH
Confidence 3455666777888888899999888888765221 1 13567777888888888888888888888763 1121 234
Q ss_pred HHHHHHHHH------------------cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 036577 327 NVIMDELCK------------------NGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNR 388 (470)
Q Consensus 327 ~~l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 388 (470)
..+..++.. .|++++|...|+++++..+. +...+...... ..+...+
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~---- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHH----
Confidence 444445543 34455555555555544221 11111111000 0000000
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036577 389 CMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD--VVIYNTLFIGLFEIHQVERAFKLFDEMRRD 457 (470)
Q Consensus 389 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (470)
......+...|.+.|++++|+..|+++++...... ...+..+..++.+.|+.++|.+.++.+...
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 01123466778899999999999999997632211 246788899999999999999999998874
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.05 E-value=5.5e-09 Score=102.30 Aligned_cols=154 Identities=8% Similarity=-0.021 Sum_probs=117.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHH
Q 036577 266 EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRL 345 (470)
Q Consensus 266 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 345 (470)
.|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+..+|...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999887753 3467888999999999999999999999998875 55678888999999999999999999
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CChhHHHHHHHHHHHC
Q 036577 346 LDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKN---KEIEGALSLYSEMLSK 422 (470)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 422 (470)
+++..+.... +...+..+..++...|++++|.+.+++..+.. +.+...+..+..++... |+.++|.+.+++.++.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999988644 67888999999999999999999999988764 44788889999999999 9999999999999876
Q ss_pred C
Q 036577 423 G 423 (470)
Q Consensus 423 ~ 423 (470)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.05 E-value=6.2e-09 Score=92.19 Aligned_cols=166 Identities=14% Similarity=0.009 Sum_probs=126.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHH-HHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFN-SLI 184 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~ 184 (470)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|...++++... .|+..... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 66777788888888999999999999888765 567788888888899999999999988888765 34443332 233
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHH
Q 036577 185 KGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLC 264 (470)
Q Consensus 185 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 264 (470)
..+...++.++|...+++..... +.+...+..+...+...|++++|+..|+++....+. ..+...+..++..+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~-----~~~~~a~~~l~~~~~ 266 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT-----AADGQTRXTFQEILA 266 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----GGGGHHHHHHHHHHH
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc-----cccchHHHHHHHHHH
Confidence 34667777888888888887753 345677888888888899999999999988887621 223677888888888
Q ss_pred hCCCHHHHHHHHHHHH
Q 036577 265 KEGFVDKAKELFLKMK 280 (470)
Q Consensus 265 ~~g~~~~a~~~~~~~~ 280 (470)
..|+.++|...|++..
T Consensus 267 ~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 267 ALGTGDALASXYRRQL 282 (287)
T ss_dssp HHCTTCHHHHHHHHHH
T ss_pred HcCCCCcHHHHHHHHH
Confidence 8888888888887654
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.05 E-value=7e-09 Score=91.83 Aligned_cols=160 Identities=10% Similarity=0.036 Sum_probs=69.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 036577 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNS 293 (470)
Q Consensus 214 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 293 (470)
.+..+...+.+.|++++|...|+++.... +.+...+..+...+.+.|++++|...++.+... .|+......
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~ 189 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQLS-------NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGL 189 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHH
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhC-------CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHH
Confidence 33344444445555555555555554443 334444445555555555555555555444432 122221111
Q ss_pred H-HHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHcC
Q 036577 294 L-IHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRP-NAFVYNTLMDGFCLT 371 (470)
Q Consensus 294 l-i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 371 (470)
. ...+...++.++|...+++..+.. +.+...+..+...+...|++++|...+.++.+..+.. +...+..++..+...
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 1 111333344444444444444432 3334444444444445555555555554444443221 133444444444444
Q ss_pred CCHHHHHHHHHH
Q 036577 372 GRVNRAKELFVS 383 (470)
Q Consensus 372 g~~~~A~~~~~~ 383 (470)
|+.++|...+++
T Consensus 269 g~~~~a~~~~r~ 280 (287)
T 3qou_A 269 GTGDALASXYRR 280 (287)
T ss_dssp CTTCHHHHHHHH
T ss_pred CCCCcHHHHHHH
Confidence 444444444433
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.03 E-value=5.5e-09 Score=93.58 Aligned_cols=204 Identities=13% Similarity=0.017 Sum_probs=118.5
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 036577 84 TITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFV 163 (470)
Q Consensus 84 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 163 (470)
.|++++|.+++++..+..+. . + +...+++++|...|.+. ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~--~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT--S---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC--C---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc--c---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 45677888888777654332 1 0 11146666666666554 335566677777777
Q ss_pred HHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-CcchHHHHHHHHHhcCChHHHHH
Q 036577 164 VLGRILRS----CFT-PDAVTFNSLIKGLCAESRIMEAAALFTKLKAF----GCEP-NVITYSTLINGLCRTGHTIVALN 233 (470)
Q Consensus 164 ~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~~-~~~~~~~l~~~~~~~g~~~~a~~ 233 (470)
.+.+..+. +-. .-..+|+.+..+|...|++++|+..|++..+. |-+. ...++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 66665542 100 01345666777777777777777777765432 1111 13456666777766 88888888
Q ss_pred HHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHccCCHHHHH
Q 036577 234 LFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE----NINPN-VVTYNSLIHGFCYANDWNEAK 308 (470)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~~~~~~a~ 308 (470)
.|++........+. ......++..+...+.+.|++++|+..|++.... +..+. ...+..+..++...|++++|.
T Consensus 137 ~~~~Al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 137 LYQQAAAVFENEER-LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCC-hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 88777654310000 0011356677777777778888887777776552 11111 124455555666667777777
Q ss_pred HHHHHHH
Q 036577 309 CLLIEMM 315 (470)
Q Consensus 309 ~~~~~~~ 315 (470)
..|++..
T Consensus 216 ~~~~~al 222 (307)
T 2ifu_A 216 KCVRESY 222 (307)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 7777766
No 114
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.02 E-value=6.3e-07 Score=85.37 Aligned_cols=317 Identities=10% Similarity=-0.013 Sum_probs=207.4
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhC-CC-CCCHHHHHHHHHHHH----hcCC
Q 036577 85 ITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKH-YDTVLSLFKRLNST-GL-FPDLYTYNILINCFC----KMGR 157 (470)
Q Consensus 85 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~m~~~-~~-~~~~~~~~~li~~~~----~~g~ 157 (470)
++++.+..+|+..+... |++..|...+....+.+. .+....+|+..... |. +.+...|...+..+. ..++
T Consensus 28 ~~~e~~~~iferal~~~---ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKS---YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTTC---CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhccC---CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 68999999999998854 488899999988877763 45677888887653 42 346677877776544 3456
Q ss_pred cchHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 036577 158 VSPGFVVLGRILRSCFTPDAVTFNSLIKGLCA-------------ESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCR 224 (470)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 224 (470)
.+.+..+|++.++.....-...|......-.. .+.+..|..+++++...--..+...|...+.--..
T Consensus 105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~ 184 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME 184 (493)
T ss_dssp HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence 78899999999874322122333333222111 12233445555544431000123355554443222
Q ss_pred cC--C-----hHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHH-------
Q 036577 225 TG--H-----TIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVT------- 290 (470)
Q Consensus 225 ~g--~-----~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------- 290 (470)
.+ - .+.+..+|+++.... +.+...|...+..+.+.|+.++|..++++.... +.+...
T Consensus 185 ~~~~~~~~~~~~Rv~~~ye~al~~~-------p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~ 255 (493)
T 2uy1_A 185 NGMKLGGRPHESRMHFIHNYILDSF-------YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLV 255 (493)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHT-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHH
T ss_pred CCccCcchhhHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhh
Confidence 11 1 345678899988764 556788988899999999999999999988765 222211
Q ss_pred ---------------------------------HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc-
Q 036577 291 ---------------------------------YNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKN- 336 (470)
Q Consensus 291 ---------------------------------~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 336 (470)
|...+....+.++.+.|..+|+.. +.. ..+...|...+..-...
T Consensus 256 ~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~ 333 (493)
T 2uy1_A 256 MDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYAT 333 (493)
T ss_dssp TTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHC
Confidence 222222333466788999999988 321 23444444333322233
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 036577 337 GKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLY 416 (470)
Q Consensus 337 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 416 (470)
++.+.|..+|+...+.-.. +...+...++...+.|+.+.|+.+|+++. .....|...+..-...|+.+.+..++
T Consensus 334 ~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~ 407 (493)
T 2uy1_A 334 GSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELV 407 (493)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3699999999999886432 45566777888888999999999999873 25788888888888899999999999
Q ss_pred HHHHH
Q 036577 417 SEMLS 421 (470)
Q Consensus 417 ~~~~~ 421 (470)
+++.+
T Consensus 408 ~~~~~ 412 (493)
T 2uy1_A 408 DQKMD 412 (493)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88874
No 115
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.01 E-value=6.4e-08 Score=82.26 Aligned_cols=195 Identities=11% Similarity=-0.034 Sum_probs=87.3
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHh
Q 036577 79 EGDITTITPNEAFCIFDYMLNMRPSPPP-VSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDL---YTYNILINCFCK 154 (470)
Q Consensus 79 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~ 154 (470)
..+...|++++|+..|+.+++..|..+. ..++..+..++.+.|++++|+..|+++.+.. +.+. ..+..+..++..
T Consensus 12 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~~~g~~~~~ 90 (225)
T 2yhc_A 12 QQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMYMRGLTNMA 90 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHHHHHHHHHh
Confidence 3345556666666666666665554221 3455555666666666666666666655542 1111 133333333333
Q ss_pred cCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-chHHHHHHHHHhcCChHHHHH
Q 036577 155 MGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNV-ITYSTLINGLCRTGHTIVALN 233 (470)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~g~~~~a~~ 233 (470)
.|.. .+ ..|..+...+...|++++|...|+++.+.. |+. ..+.....
T Consensus 91 ~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~------------- 138 (225)
T 2yhc_A 91 LDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKR------------- 138 (225)
T ss_dssp HHC-------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHH-------------
T ss_pred hhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHH-------------
Confidence 2210 00 011112222334567777888887777642 332 22211110
Q ss_pred HHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCCHHHHHHHH
Q 036577 234 LFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINP--NVVTYNSLIHGFCYANDWNEAKCLL 311 (470)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~ 311 (470)
...+... .......+...+.+.|++++|...|+.+.+..... ....+..+..+|.+.|++++|.+.+
T Consensus 139 -l~~~~~~----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~ 207 (225)
T 2yhc_A 139 -LVFLKDR----------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVA 207 (225)
T ss_dssp -HHHHHHH----------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -HHHHHHH----------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 0000000 00112234455555666666666666655532110 0134555556666666666666666
Q ss_pred HHHHHC
Q 036577 312 IEMMDQ 317 (470)
Q Consensus 312 ~~~~~~ 317 (470)
+.+...
T Consensus 208 ~~l~~~ 213 (225)
T 2yhc_A 208 KIIAAN 213 (225)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 655554
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.97 E-value=1.6e-08 Score=90.62 Aligned_cols=227 Identities=9% Similarity=0.012 Sum_probs=158.5
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh-cCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCC
Q 036577 189 AESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCR-TGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEG 267 (470)
Q Consensus 189 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 267 (470)
..|++++|.+++++..+.. +.. +.+ .+++++|...|.++ ...|...|
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------------~~~~~~~g 50 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------------AVAFKNAK 50 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------------HHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------------HHHHHHcC
Confidence 3567788888888776542 111 111 46777777776654 34677889
Q ss_pred CHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHHHcC
Q 036577 268 FVDKAKELFLKMKDE----NIN-PNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ----GVQP-NVVTFNVIMDELCKNG 337 (470)
Q Consensus 268 ~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g 337 (470)
++++|...|.+.... +-. .-..+|..+..+|.+.|++++|+..|++..+. |-.. ...++..+..+|.. |
T Consensus 51 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g 129 (307)
T 2ifu_A 51 QLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-L 129 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-T
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-C
Confidence 999999999887653 111 11457888889999999999999999987653 2111 13567788888888 9
Q ss_pred CHHHHHHHHHHHHHcCCCC-----CHhHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcC
Q 036577 338 KMDEASRLLDLMIQIGVRP-----NAFVYNTLMDGFCLTGRVNRAKELFVSMESN----RCMHD-VFSYSILINGYCKNK 407 (470)
Q Consensus 338 ~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g 407 (470)
++++|+..+++.++..... ...++..+...|...|++++|...|++.... +..+. ...+..++.++...|
T Consensus 130 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g 209 (307)
T 2ifu_A 130 DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRA 209 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcC
Confidence 9999999999987652111 1467888999999999999999999988763 11111 236777788888899
Q ss_pred ChhHHHHHHHHHHHCCCC-CC---HhHHHHHHHHHHhcCCHHHHHHH
Q 036577 408 EIEGALSLYSEMLSKGIK-PD---VVIYNTLFIGLFEIHQVERAFKL 450 (470)
Q Consensus 408 ~~~~A~~~~~~~~~~~~~-p~---~~~~~~l~~~~~~~g~~~~A~~~ 450 (470)
++++|...|++.+ .... ++ ......++.++ ..|+.+.+.++
T Consensus 210 ~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 210 DYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp CHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred CHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 9999999999998 4211 11 12344555555 57887776663
No 117
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.96 E-value=1.7e-08 Score=82.18 Aligned_cols=126 Identities=10% Similarity=0.121 Sum_probs=106.9
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcC
Q 036577 78 GEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINC-FCKMG 156 (470)
Q Consensus 78 ~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g 156 (470)
+......|++++|+..|+..+...|. +...|..+..++...|++++|+..|++..+.. +.+...+..+..+ +...|
T Consensus 17 ~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~ 93 (177)
T 2e2e_A 17 LHQFASQQNPEAQLQALQDKIRANPQ--NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQAS 93 (177)
T ss_dssp TCCCC-----CCCCHHHHHHHHHCCS--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTT
T ss_pred hhhhhhccCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcC
Confidence 34566788999999999999998886 88999999999999999999999999998875 5578888888888 78999
Q ss_pred Cc--chHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036577 157 RV--SPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFG 207 (470)
Q Consensus 157 ~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 207 (470)
++ ++|...++++++.. +.+...+..+...|...|++++|...|+++.+..
T Consensus 94 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 94 QHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp TCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred CcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 98 99999999999874 4567888999999999999999999999998863
No 118
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.94 E-value=6.4e-07 Score=79.88 Aligned_cols=172 Identities=9% Similarity=-0.001 Sum_probs=143.9
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-CcchHH
Q 036577 86 TPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNK-HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM-G-RVSPGF 162 (470)
Q Consensus 86 ~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g-~~~~a~ 162 (470)
..++|+++++.++..+|. +..+|+.--.++...| .+++++.+++.+.... +.+..+|+.-..++... + ++++++
T Consensus 69 ~se~AL~lt~~~L~~nP~--~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPA--HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCHHHHHHHHHHHHhCch--hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 457899999999999997 8999999999998888 5999999999999886 67788898888888877 7 899999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC-------
Q 036577 163 VVLGRILRSCFTPDAVTFNSLIKGLCAESRIM--------EAAALFTKLKAFGCEPNVITYSTLINGLCRTGH------- 227 (470)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~------- 227 (470)
++++.+++.. +.+..+|+.-.-++.+.|.++ ++++.++++.+.. +.|..+|+.....+.+.++
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHH
Confidence 9999999875 557888887776666666666 8999999998864 4578889888888877776
Q ss_pred hHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCH
Q 036577 228 TIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFV 269 (470)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 269 (470)
++++++.++++.... +-|...|+.+-..+.+.|+.
T Consensus 224 ~~eELe~~~~aI~~~-------P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 224 LQDELIYILKSIHLI-------PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhcCCC
Confidence 689999999998876 67888888877777776654
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.93 E-value=4.8e-09 Score=80.03 Aligned_cols=96 Identities=14% Similarity=0.088 Sum_probs=52.5
Q ss_pred HhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036577 73 RFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152 (470)
Q Consensus 73 ~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 152 (470)
.++..|..+...|++++|++.|+.+++..|. +..+|..+..++.+.|++++|+..|++.++.+ +.+...|..+..++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE--NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 3334444455555555555555555555554 55555555555555555555555555555543 34455555555555
Q ss_pred HhcCCcchHHHHHHHHHhC
Q 036577 153 CKMGRVSPGFVVLGRILRS 171 (470)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~~ 171 (470)
...|++++|.+.|++.++.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 5555555555555555554
No 120
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.93 E-value=2.3e-08 Score=86.24 Aligned_cols=187 Identities=8% Similarity=-0.066 Sum_probs=130.4
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHHhCCCCCC--------------
Q 036577 83 TTITPNEAFCIFDYMLNMRPSPPPVSSFNIL-------FGCLAKNKHYDTVLSLFKRLNSTGLFPD-------------- 141 (470)
Q Consensus 83 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~m~~~~~~~~-------------- 141 (470)
..++.+.|.+.|..+.+..|. ....|..+ ...+.+.++..+++..+..-.+. .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~--~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES--ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHhChh--hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCcccc
Confidence 468999999999999999987 89999988 57777777777777776665552 221
Q ss_pred --------HHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--C
Q 036577 142 --------LYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEP--N 211 (470)
Q Consensus 142 --------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~--~ 211 (470)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .| .
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence 2234445667778888888888887776643 333355566667778888888888887554421 11 1
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCC--CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 036577 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEP--NTVTYTTIIDGLCKEGFVDKAKELFLKMKDE 282 (470)
Q Consensus 212 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 282 (470)
...+..+..++.+.|++++|+..|++..... ..| ..........++.+.|+.++|..+|+++...
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~------~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSP------AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTST------TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC------CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 2356667777888888888888888876432 113 3345666677777788888888888887775
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.91 E-value=4e-07 Score=80.77 Aligned_cols=164 Identities=9% Similarity=0.056 Sum_probs=123.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCC-CCCH----hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HhHHH
Q 036577 293 SLIHGFCYANDWNEAKCLLIEMMDQGV-QPNV----VTFNVIMDELCKNGKMDEASRLLDLMIQIGVR-PN----AFVYN 362 (470)
Q Consensus 293 ~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~ 362 (470)
..+..+...|++++|..++++..+... .++. ..+..+...+...+++++|...++++.+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678889999999999999887431 2221 12334666677788999999999999885332 22 23688
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHH----C-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCC-HhHH
Q 036577 363 TLMDGFCLTGRVNRAKELFVSMES----N-RCMH-DVFSYSILINGYCKNKEIEGALSLYSEMLSK----GIKPD-VVIY 431 (470)
Q Consensus 363 ~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~ 431 (470)
.++.+|...|++++|...|+++.+ . +..+ ...+|..+..+|.+.|++++|+..+++.++. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999988874 1 1122 3447889999999999999999999988753 22222 5688
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHH
Q 036577 432 NTLFIGLFEIH-QVERAFKLFDEMRR 456 (470)
Q Consensus 432 ~~l~~~~~~~g-~~~~A~~~~~~m~~ 456 (470)
..+..++.+.| .+++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88999999999 46999999988864
No 122
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.88 E-value=1.8e-06 Score=77.05 Aligned_cols=103 Identities=8% Similarity=0.005 Sum_probs=49.2
Q ss_pred CCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc-C-ChHHHH
Q 036577 156 GRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAES-RIMEAAALFTKLKAFGCEPNVITYSTLINGLCRT-G-HTIVAL 232 (470)
Q Consensus 156 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-g-~~~~a~ 232 (470)
+..++|+++++.++..+ +.+..+|+.--..+...| .++++++.++.+.... +-+..+|+.-...+.+. + +.++++
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 33445555555555543 334445555555555555 3555555555555432 22344444444444443 4 455555
Q ss_pred HHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCC
Q 036577 233 NLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEG 267 (470)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 267 (470)
++++.+.+.+ +.|..+|+.-.-++.+.|
T Consensus 146 ~~~~k~L~~d-------pkNy~AW~~R~wvl~~l~ 173 (349)
T 3q7a_A 146 EYIHGSLLPD-------PKNYHTWAYLHWLYSHFS 173 (349)
T ss_dssp HHHHHHTSSC-------TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-------CCCHHHHHHHHHHHHHhc
Confidence 5555555443 344444444444443333
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.87 E-value=2.9e-07 Score=77.29 Aligned_cols=129 Identities=11% Similarity=-0.019 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 036577 254 VTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDEL 333 (470)
Q Consensus 254 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 333 (470)
..+..+...+...|++++|.+.|++.. .|+...+..+..+|...|++++|...+++..+.. +.+...+..+..++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 344555666666677777776666553 3456666666666666666666666666666553 34455666666666
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCC---------------HhHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 036577 334 CKNGKMDEASRLLDLMIQIGVRPN---------------AFVYNTLMDGFCLTGRVNRAKELFVSMESN 387 (470)
Q Consensus 334 ~~~g~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (470)
...|++++|...++.+.+...... ...+..+..++...|++++|...|+...+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 666666666666666666532211 144555555555556666665555555554
No 124
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.87 E-value=5.3e-07 Score=79.99 Aligned_cols=162 Identities=9% Similarity=0.017 Sum_probs=90.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCH----hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC-CC----H
Q 036577 218 LINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNT----VTYTTIIDGLCKEGFVDKAKELFLKMKDENIN-PN----V 288 (470)
Q Consensus 218 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~ 288 (470)
.+..+...|++++|.+++++...... ..++. ..+..+...+...|++++|...++++...... ++ .
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~ 155 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEE-----YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCC-----CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhcccc-----CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHH
Confidence 35567778888888888888876442 12221 12334555666667777777777777663211 12 2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHC-----CCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCC-
Q 036577 289 VTYNSLIHGFCYANDWNEAKCLLIEMMDQ-----GVQPN-VVTFNVIMDELCKNGKMDEASRLLDLMIQIG----VRPN- 357 (470)
Q Consensus 289 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~- 357 (470)
.+++.+...|...|++++|...++++.+. +..+. ..++..+...|.+.|++++|...+++.++.. ..+.
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~ 235 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 35666666777777777777777666531 11111 1245555556666666666666665554321 1111
Q ss_pred HhHHHHHHHHHHcCCC-HHHHHHHHHHH
Q 036577 358 AFVYNTLMDGFCLTGR-VNRAKELFVSM 384 (470)
Q Consensus 358 ~~~~~~l~~~~~~~g~-~~~A~~~~~~~ 384 (470)
..+|..+..++.+.|+ .++|...+++.
T Consensus 236 ~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 3445555555555553 35555555444
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.85 E-value=1.8e-07 Score=74.93 Aligned_cols=129 Identities=13% Similarity=0.034 Sum_probs=91.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036577 324 VTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGY 403 (470)
Q Consensus 324 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (470)
..+..+...+...|++++|...+++..+.... +...+..+..++...|++++|...+++..+.. +.+...|..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 34566666777778888888888777776433 56777777777888888888888887777653 34677778888888
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHhHHHH--HHHHHHhcCCHHHHHHHHHHHH
Q 036577 404 CKNKEIEGALSLYSEMLSKGIKPDVVIYNT--LFIGLFEIHQVERAFKLFDEMR 455 (470)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~g~~~~A~~~~~~m~ 455 (470)
...|++++|...|+++.+.... +...+.. ++..+...|++++|.+.+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8888888888888887765322 3344433 3344667788888888887765
No 126
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.85 E-value=2.8e-07 Score=77.37 Aligned_cols=144 Identities=13% Similarity=-0.056 Sum_probs=117.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 036577 290 TYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFC 369 (470)
Q Consensus 290 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 369 (470)
.+..+...+...|++++|...|++.. .|+...+..+..++...|++++|...+++..+.... +...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHH
Confidence 45566778889999999999998774 668889999999999999999999999999988644 7888999999999
Q ss_pred cCCCHHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHH
Q 036577 370 LTGRVNRAKELFVSMESNRCM--------------H-DVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 434 (470)
Q Consensus 370 ~~g~~~~A~~~~~~~~~~~~~--------------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 434 (470)
..|++++|...|++..+.... | ....+..+..+|...|++++|.+.|++..+.........+...
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a 162 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKA 162 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHH
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHHH
Confidence 999999999999999885311 1 2378899999999999999999999999976443333334444
Q ss_pred HHHH
Q 036577 435 FIGL 438 (470)
Q Consensus 435 ~~~~ 438 (470)
+..+
T Consensus 163 ~~~~ 166 (213)
T 1hh8_A 163 MECV 166 (213)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.80 E-value=3e-07 Score=73.57 Aligned_cols=128 Identities=13% Similarity=0.057 Sum_probs=76.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 036577 290 TYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFC 369 (470)
Q Consensus 290 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 369 (470)
.+..+...+...|++++|...+.+..+.. +.+...+..+..++...|++++|...+++..+.... +...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 34445555566666666666666665543 334556666666666666666666666666665432 4566666666677
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHHcCChhHHHHHHHHHH
Q 036577 370 LTGRVNRAKELFVSMESNRCMHDVFSYSIL--INGYCKNKEIEGALSLYSEML 420 (470)
Q Consensus 370 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~ 420 (470)
..|++++|...+++..+.. +.+...+..+ +..+...|++++|++.+....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7777777777776666543 2244444333 333556677777777766543
No 128
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.80 E-value=2.5e-07 Score=70.40 Aligned_cols=94 Identities=16% Similarity=0.069 Sum_probs=44.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 036577 326 FNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCK 405 (470)
Q Consensus 326 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 405 (470)
+......|.+.|++++|+..|++.++..+. +...|..+..++.+.|++++|+..+++.++.+ +.+...|..+..+|..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 334444444555555555555554444322 44444444555555555555555555444432 2244445555555555
Q ss_pred cCChhHHHHHHHHHHH
Q 036577 406 NKEIEGALSLYSEMLS 421 (470)
Q Consensus 406 ~g~~~~A~~~~~~~~~ 421 (470)
.|++++|++.|++.++
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5555555555555444
No 129
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.80 E-value=2.3e-08 Score=78.66 Aligned_cols=99 Identities=7% Similarity=-0.079 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIK 185 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (470)
+...+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|...|++.++.. +.+...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 45566666666666677777777776666654 4456666666666666666666666666666643 334556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 036577 186 GLCAESRIMEAAALFTKLKAF 206 (470)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~ 206 (470)
+|...|++++|+..|++..+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666666666654
No 130
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.79 E-value=3.4e-08 Score=77.70 Aligned_cols=110 Identities=11% Similarity=0.018 Sum_probs=89.6
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036577 93 IFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSC 172 (470)
Q Consensus 93 ~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 172 (470)
.|+.++...|. +...+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|...|++.++..
T Consensus 9 ~~~~al~~~p~--~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 9 TIAMLNEISSD--TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp SHHHHTTCCHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHcCCHh--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45666665554 67778888888999999999999999888765 5678888888888999999999999999888764
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036577 173 FTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAF 206 (470)
Q Consensus 173 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 206 (470)
+.+...+..+..+|...|++++|...|++..+.
T Consensus 86 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 -IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 446678888888899999999999999888764
No 131
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.79 E-value=8e-08 Score=75.54 Aligned_cols=98 Identities=10% Similarity=0.056 Sum_probs=71.0
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036577 323 VVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILING 402 (470)
Q Consensus 323 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 402 (470)
...+..+...+.+.|++++|...|+++++..+. +...|..+..+|...|++++|...|++..+.. +.+...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 445666677777777777777777777776544 66777777777777777777777777777654 3356677777777
Q ss_pred HHHcCChhHHHHHHHHHHHC
Q 036577 403 YCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~~ 422 (470)
|...|++++|+..|++.++.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777777754
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.79 E-value=2.7e-06 Score=75.35 Aligned_cols=169 Identities=8% Similarity=-0.007 Sum_probs=83.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCC---CCC--H
Q 036577 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENI---NPN--V 288 (470)
Q Consensus 214 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~--~ 288 (470)
.+...+..+...|++++|.+.+++..+....... .......+..+...+...|++++|...+++...... .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE-FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChh-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444556667777777777777776654421000 000112233344555566677777777666654211 111 3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHH---C-CCCC--CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CC-C
Q 036577 289 VTYNSLIHGFCYANDWNEAKCLLIEMMD---Q-GVQP--NVVTFNVIMDELCKNGKMDEASRLLDLMIQIGV----RP-N 357 (470)
Q Consensus 289 ~~~~~li~~~~~~~~~~~a~~~~~~~~~---~-~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~-~ 357 (470)
.+++.+...|...|++++|...+++..+ . +..+ ...++..+..+|...|++++|...+++..+... .. -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 3555666666666666666666666542 1 1011 113455555555556666666655555543210 00 1
Q ss_pred HhHHHHHHHHHHcCCCHHHH-HHHHHH
Q 036577 358 AFVYNTLMDGFCLTGRVNRA-KELFVS 383 (470)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A-~~~~~~ 383 (470)
..+|..+..+|.+.|+.++| ...+++
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 33445555555555555555 444443
No 133
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.78 E-value=6.7e-08 Score=80.44 Aligned_cols=158 Identities=9% Similarity=-0.046 Sum_probs=118.4
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcC
Q 036577 82 ITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNST----GLF-PDLYTYNILINCFCKMG 156 (470)
Q Consensus 82 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g 156 (470)
+..|++++|.+.++.+.. .+. ....++..+...+...|++++|+..+++.... +.. ....++..+...+...|
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPA-TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STT-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcC-ChH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 457899999996666544 332 36788999999999999999999999987662 211 23457888899999999
Q ss_pred CcchHHHHHHHHHhC----CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----cchHHHHHHHHHhc
Q 036577 157 RVSPGFVVLGRILRS----CFT--PDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCE-PN----VITYSTLINGLCRT 225 (470)
Q Consensus 157 ~~~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-~~----~~~~~~l~~~~~~~ 225 (470)
++++|...+++..+. +-. ....++..+...+...|++++|...+++....... .+ ..++..+...+...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 999999999987763 211 12456888899999999999999999987643111 11 23457788889999
Q ss_pred CChHHHHHHHHHHHhc
Q 036577 226 GHTIVALNLFEEMANG 241 (470)
Q Consensus 226 g~~~~a~~~~~~~~~~ 241 (470)
|++++|.+.+++....
T Consensus 161 g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 161 KNLLEAQQHWLRARDI 176 (203)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999988754
No 134
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.78 E-value=4.7e-07 Score=78.06 Aligned_cols=189 Identities=8% Similarity=-0.064 Sum_probs=117.0
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHhcCCcchHHHHHHHHHh------------CCC------
Q 036577 119 KNKHYDTVLSLFKRLNSTGLFPDLYTYNIL-------INCFCKMGRVSPGFVVLGRILR------------SCF------ 173 (470)
Q Consensus 119 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l-------i~~~~~~g~~~~a~~~~~~~~~------------~~~------ 173 (470)
..++...|.+.|.++.+.. +-....|..+ ...+.+.++..+++..+.+.+. .|.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 5788899999999988875 5567778777 4666666666666666555544 110
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCC
Q 036577 174 --TPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEP 251 (470)
Q Consensus 174 --~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 251 (470)
..-...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-------d~ 167 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-------DK 167 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-------CH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-------Cc
Confidence 0002334456666777778888887777776543 333255555566777777777777776443211 11
Q ss_pred --CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 036577 252 --NTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN--VVTYNSLIHGFCYANDWNEAKCLLIEMMDQ 317 (470)
Q Consensus 252 --~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (470)
....+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 168 ~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 168 FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 123566667777777777777777777664322132 234455556666777777777777777665
No 135
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.77 E-value=9.5e-08 Score=79.50 Aligned_cols=157 Identities=10% Similarity=-0.025 Sum_probs=81.5
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCC-CCHhHHHHHHHHHHHcCC
Q 036577 264 CKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ----GVQ-PNVVTFNVIMDELCKNGK 338 (470)
Q Consensus 264 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~ 338 (470)
...|++++|.+.++.+... ......++..+...+...|++++|...+++..+. +.. .....+..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3456777777744444331 1224556666666666777777777776666541 111 123445555666666666
Q ss_pred HHHHHHHHHHHHHc----CCCC--CHhHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcC
Q 036577 339 MDEASRLLDLMIQI----GVRP--NAFVYNTLMDGFCLTGRVNRAKELFVSMESN----RCMH-DVFSYSILINGYCKNK 407 (470)
Q Consensus 339 ~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g 407 (470)
+++|...+++..+. +..+ ....+..+...+...|++++|...+++.... +... ...++..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 66666666665543 1011 1234555566666666666666666555421 1000 1223455555666666
Q ss_pred ChhHHHHHHHHHHH
Q 036577 408 EIEGALSLYSEMLS 421 (470)
Q Consensus 408 ~~~~A~~~~~~~~~ 421 (470)
++++|.+.+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666665543
No 136
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.77 E-value=8.4e-08 Score=84.55 Aligned_cols=194 Identities=9% Similarity=-0.010 Sum_probs=115.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHH
Q 036577 105 PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLI 184 (470)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 184 (470)
.+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...+++.++.. +.+...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 356777888888888888888888888887764 4467788888888888888888888888887763 44677778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHH
Q 036577 185 KGLCAESRIMEAAALFTKLKAFGCEPN-VITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGL 263 (470)
Q Consensus 185 ~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 263 (470)
.+|...|++++|+..|++..+.. |+ ...+...+....+. .++..... ..... .+.+......+...
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~------~~~~~~i~~~l~~l- 146 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKKKRWNS-IEERR------IHQESELHSYLTRL- 146 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHHHHHHH-HHHTC------CCCCCHHHHHHHHH-
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHHHHHHH-HHHHH------HhhhHHHHHHHHHH-
Confidence 88888888888888888776542 21 11111122111111 11111111 11111 23333333333222
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcc-CCHHHHHHHHHHHHH
Q 036577 264 CKEGFVDKAKELFLKMKDENINPNV-VTYNSLIHGFCYA-NDWNEAKCLLIEMMD 316 (470)
Q Consensus 264 ~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~-~~~~~a~~~~~~~~~ 316 (470)
..|++++|++.++...+. .|+. .....+...+.+. +.+++|.++|.++.+
T Consensus 147 -~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 147 -IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp -HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred -HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 256777777777666654 2333 2223333333333 456666666665543
No 137
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.77 E-value=9.2e-07 Score=78.41 Aligned_cols=123 Identities=11% Similarity=0.041 Sum_probs=54.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCC---CC--HhHHHHHHHHHHcCCCHHHHHHHHHHHHH---CC-CCC--CHHHHHHHH
Q 036577 332 ELCKNGKMDEASRLLDLMIQIGVR---PN--AFVYNTLMDGFCLTGRVNRAKELFVSMES---NR-CMH--DVFSYSILI 400 (470)
Q Consensus 332 ~~~~~g~~~~a~~~~~~~~~~~~~---~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~-~~~--~~~~~~~l~ 400 (470)
.+...|++++|...+++..+.... +. ..+++.++..|...|++++|...+++..+ .. ..+ ...++..+.
T Consensus 124 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg 203 (293)
T 2qfc_A 124 YVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHA 203 (293)
T ss_dssp HHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHH
Confidence 344444555555555544432111 11 22444555555555555555555554431 10 000 113445555
Q ss_pred HHHHHcCChhHHHHHHHHHHHCC----CCC-CHhHHHHHHHHHHhcCCHHHH-HHHHHHH
Q 036577 401 NGYCKNKEIEGALSLYSEMLSKG----IKP-DVVIYNTLFIGLFEIHQVERA-FKLFDEM 454 (470)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~~----~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~m 454 (470)
.+|...|++++|+..+++.++.. ... -..+|..+...+...|++++| ...+++.
T Consensus 204 ~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 204 KALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 55555555555555555544321 000 133445555555555555555 4444444
No 138
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.76 E-value=2.7e-08 Score=78.26 Aligned_cols=111 Identities=7% Similarity=-0.050 Sum_probs=85.2
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 036577 309 CLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNR 388 (470)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 388 (470)
..++++.... +.+...+..+...+.+.|++++|...|+.++...+. +...|..+..++...|++++|...|++.+...
T Consensus 8 ~~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 8 GTIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CSHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3445554432 334556677778888889999999999888887544 77788888888888899999998888887764
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 389 CMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 389 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
+.+...|..+..+|...|++++|...|++.++.
T Consensus 86 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 -IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 346777888888888899999999888888764
No 139
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.75 E-value=6e-07 Score=67.67 Aligned_cols=97 Identities=19% Similarity=0.257 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036577 324 VTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGY 403 (470)
Q Consensus 324 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (470)
..+..+...+...|++++|...++++.+... .+...+..++..+...|++++|...++++.+.. +.+...+..+..++
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 4455555556666666666666666655432 245555566666666666666666666655542 33555666666666
Q ss_pred HHcCChhHHHHHHHHHHHC
Q 036577 404 CKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~ 422 (470)
...|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 6666666666666666554
No 140
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.74 E-value=1.4e-08 Score=92.15 Aligned_cols=153 Identities=14% Similarity=0.036 Sum_probs=125.7
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---------------HHHHHH
Q 036577 83 TTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPD---------------LYTYNI 147 (470)
Q Consensus 83 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~---------------~~~~~~ 147 (470)
..+++++|+..|+......|. ....|..+...+.+.|++++|+..|++..+.. +.+ ...|..
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~--~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~n 201 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLE--QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLN 201 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHH
Confidence 345667777777766655443 67889999999999999999999999998874 233 588999
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 036577 148 LINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGH 227 (470)
Q Consensus 148 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 227 (470)
+..++.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|++..+.. +.+...+..+..++.+.|+
T Consensus 202 la~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 202 LAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRR 279 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999874 5578899999999999999999999999998863 3456778888889999999
Q ss_pred hHHH-HHHHHHHHh
Q 036577 228 TIVA-LNLFEEMAN 240 (470)
Q Consensus 228 ~~~a-~~~~~~~~~ 240 (470)
.++| ...|+.|..
T Consensus 280 ~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 280 QLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 9888 446666543
No 141
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.74 E-value=4.8e-08 Score=86.09 Aligned_cols=96 Identities=15% Similarity=-0.052 Sum_probs=54.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 036577 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYN 292 (470)
Q Consensus 213 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 292 (470)
..+..+...+...|++++|+..|++..... +.+...|..+..++.+.|++++|...+++..+.. +.+...+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 76 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-------PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHF 76 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 344455555555666666666666655543 3355555556666666666666666666555542 22445555
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHH
Q 036577 293 SLIHGFCYANDWNEAKCLLIEMMD 316 (470)
Q Consensus 293 ~li~~~~~~~~~~~a~~~~~~~~~ 316 (470)
.+..+|...|++++|...|++..+
T Consensus 77 ~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 77 FLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555666666666666666655544
No 142
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.73 E-value=3.5e-07 Score=70.03 Aligned_cols=118 Identities=10% Similarity=-0.007 Sum_probs=77.0
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036577 322 NVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILIN 401 (470)
Q Consensus 322 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 401 (470)
+...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 4455666666777777777777777777665433 56667777777777777777777777776643 335667777777
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 036577 402 GYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIH 442 (470)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 442 (470)
++...|++++|.+.|++..+.... +...+..+...+...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 777777777777777777654211 3345555555555544
No 143
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.73 E-value=1.2e-07 Score=77.18 Aligned_cols=121 Identities=8% Similarity=0.100 Sum_probs=80.7
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH-HHcCCCH--H
Q 036577 299 CYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDG-FCLTGRV--N 375 (470)
Q Consensus 299 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 375 (470)
...|++++|...+++..+.. +.+...+..+...|...|++++|...++++.+.... +...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence 34566677777777666553 445666777777777777777777777777766433 56666666666 6677777 7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 376 RAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 376 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
+|...++.+.+.. +.+...+..+..+|...|++++|...|+++.+.
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 7777777776653 335667777777777778888888877777765
No 144
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.73 E-value=8.3e-07 Score=66.89 Aligned_cols=97 Identities=18% Similarity=0.257 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 036577 254 VTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDEL 333 (470)
Q Consensus 254 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 333 (470)
..+..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344444455555555555555555544331 1233444444444444444444444444444332 22333444444444
Q ss_pred HHcCCHHHHHHHHHHHHHc
Q 036577 334 CKNGKMDEASRLLDLMIQI 352 (470)
Q Consensus 334 ~~~g~~~~a~~~~~~~~~~ 352 (470)
...|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 4444444444444444443
No 145
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.72 E-value=3.3e-07 Score=70.15 Aligned_cols=119 Identities=8% Similarity=-0.026 Sum_probs=96.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHH
Q 036577 105 PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLI 184 (470)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 184 (470)
.+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+..++..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 467788889999999999999999999988764 5578888889999999999999999999988864 45678888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 036577 185 KGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTG 226 (470)
Q Consensus 185 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 226 (470)
.++...|++++|.+.|++..+.. +.+...+..+..++...|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 99999999999999999988753 234555666666665544
No 146
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.71 E-value=6.6e-07 Score=68.09 Aligned_cols=94 Identities=13% Similarity=0.071 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 036577 326 FNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCK 405 (470)
Q Consensus 326 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 405 (470)
+..+...+...|++++|...+++..+.... +...+..+...+...|++++|...++...+.. +.+...+..+..++..
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHH
Confidence 333334444444444444444444433211 33344444444444444444444444444332 2233444444444444
Q ss_pred cCChhHHHHHHHHHHH
Q 036577 406 NKEIEGALSLYSEMLS 421 (470)
Q Consensus 406 ~g~~~~A~~~~~~~~~ 421 (470)
.|++++|...|++..+
T Consensus 93 ~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALE 108 (131)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHh
Confidence 4444444444444443
No 147
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.71 E-value=4.2e-07 Score=82.28 Aligned_cols=124 Identities=6% Similarity=-0.090 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--------------HhHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036577 287 NVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPN--------------VVTFNVIMDELCKNGKMDEASRLLDLMIQI 352 (470)
Q Consensus 287 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 352 (470)
+...+..+...|.+.|++++|+..|++..+...... ...|..+..+|.+.|++++|+..++++++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555666666666666666666666665431111 244444555555555555555555555544
Q ss_pred CCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHH
Q 036577 353 GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGA 412 (470)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 412 (470)
.+. +...|..+..+|...|++++|...|++.++.. +.+...+..+..++.+.|+.++|
T Consensus 226 ~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 DSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 322 44444455555555555555555555544432 22444444455555555554444
No 148
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.71 E-value=4.9e-07 Score=68.82 Aligned_cols=120 Identities=13% Similarity=-0.002 Sum_probs=99.9
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 036577 287 NVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMD 366 (470)
Q Consensus 287 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 366 (470)
+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++...+.... +...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHH
Confidence 55677888888999999999999999988764 456778888889999999999999999999887543 6778888999
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q 036577 367 GFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEI 409 (470)
Q Consensus 367 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 409 (470)
.+...|++++|...|++..+.. +.+...+..+..++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999888764 34777888888888877765
No 149
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.70 E-value=8.8e-06 Score=72.26 Aligned_cols=167 Identities=10% Similarity=-0.020 Sum_probs=135.2
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 036577 88 NEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKH----------YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157 (470)
Q Consensus 88 ~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 157 (470)
++|+.+++.++..+|. +..+|+.--.++...++ +++++.+++.+.... +.+..+|+.-..++...|+
T Consensus 47 ~eaL~~t~~~L~~nP~--~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~ 123 (331)
T 3dss_A 47 ESVLELTSQILGANPD--FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 123 (331)
T ss_dssp HHHHHHHHHHHTTCTT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHCch--hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCc
Confidence 5899999999999987 88889887766665554 688999999998875 6788899998888888884
Q ss_pred --cchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc---------
Q 036577 158 --VSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESR-IMEAAALFTKLKAFGCEPNVITYSTLINGLCRT--------- 225 (470)
Q Consensus 158 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~--------- 225 (470)
+++++++++.+++.. +-|..+|+.-.-++...|. ++++++.++++.+.. +.|..+|+.....+...
T Consensus 124 ~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~ 201 (331)
T 3dss_A 124 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 201 (331)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC-----
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccc
Confidence 789999999999875 5688899888888888888 699999999999874 45777888776666554
Q ss_pred -----CChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhC
Q 036577 226 -----GHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKE 266 (470)
Q Consensus 226 -----g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 266 (470)
+.++++++.+....... +-|...|+-+-..+.+.
T Consensus 202 ~~~~~~~~~eEle~~~~ai~~~-------P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 202 GRLPENVLLKELELVQNAFFTD-------PNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHSS
T ss_pred cccchHHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhc
Confidence 45788999999998876 66778887665555554
No 150
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.69 E-value=1.1e-05 Score=71.58 Aligned_cols=224 Identities=12% Similarity=0.037 Sum_probs=165.7
Q ss_pred HhcCChH-HHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCC----------HHHHHHHHHHHHhCCCCCCHHHH
Q 036577 223 CRTGHTI-VALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGF----------VDKAKELFLKMKDENINPNVVTY 291 (470)
Q Consensus 223 ~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~ 291 (470)
.+.|.+. +|+++++.+...+ +.+..+|+.--.++...+. +++++.+++.+.... +-+..+|
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-------P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW 111 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTW 111 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-------chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHH
Confidence 3455554 7888888888776 4556666665555544433 678899999888764 3478888
Q ss_pred HHHHHHHHccC--CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 036577 292 NSLIHGFCYAN--DWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGK-MDEASRLLDLMIQIGVRPNAFVYNTLMDGF 368 (470)
Q Consensus 292 ~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 368 (470)
+.-..++.+.+ ++++++..++.+.+.. +-+...|+.-..++...|. ++++++.+..+++.++. |...|+.....+
T Consensus 112 ~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll 189 (331)
T 3dss_A 112 HHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLL 189 (331)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHH
T ss_pred HHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 88777777777 4899999999999876 6678888888888888888 58999999999998766 788887776666
Q ss_pred HcC--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----------CChhHHHHHHHHHHHCC
Q 036577 369 CLT--------------GRVNRAKELFVSMESNRCMHDVFSYSILINGYCKN-----------KEIEGALSLYSEMLSKG 423 (470)
Q Consensus 369 ~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~ 423 (470)
.+. +.++++.+.+...+... +-|...|+-+-..+.+. +.++++++.++++.+.
T Consensus 190 ~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~- 267 (331)
T 3dss_A 190 PQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL- 267 (331)
T ss_dssp HHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh-
Confidence 554 45788999998888764 45888887666555554 4578999999999965
Q ss_pred CCCCHhHHHHHHHH-----HHhcCCHHHHHHHHHHHHHcCCCCC
Q 036577 424 IKPDVVIYNTLFIG-----LFEIHQVERAFKLFDEMRRDGVAAD 462 (470)
Q Consensus 424 ~~p~~~~~~~l~~~-----~~~~g~~~~A~~~~~~m~~~g~~p~ 462 (470)
.||. .|..+..+ ....|..+++..++.++++ +.|.
T Consensus 268 -~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~ 307 (331)
T 3dss_A 268 -EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPM 307 (331)
T ss_dssp -CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGG
T ss_pred -Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcc
Confidence 5554 34433222 2246888899999999987 5554
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.66 E-value=1.9e-07 Score=72.84 Aligned_cols=110 Identities=10% Similarity=-0.013 Sum_probs=84.7
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036577 93 IFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSC 172 (470)
Q Consensus 93 ~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 172 (470)
.|+.++...|. +...+..+...+.+.|++++|+..|++....+ +.+...|..+..++...|++++|...|++.++..
T Consensus 6 ~l~~al~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 6 TLAMLRGLSED--TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp ---CCTTCCHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHcCCHH--HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 44444454443 56677778888888899999999998888765 5677888888888888888988988888888764
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036577 173 FTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAF 206 (470)
Q Consensus 173 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 206 (470)
+.+...+..+..+|...|++++|.+.|++..+.
T Consensus 83 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 83 -INEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456677788888888888998888888887764
No 152
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.60 E-value=9.5e-08 Score=79.34 Aligned_cols=130 Identities=12% Similarity=-0.005 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---------------HhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 036577 325 TFNVIMDELCKNGKMDEASRLLDLMIQIGVRPN---------------AFVYNTLMDGFCLTGRVNRAKELFVSMESNRC 389 (470)
Q Consensus 325 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 389 (470)
.+..+...+...|++++|...|++.++...... ...+..+..+|...|++++|...++..++..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 344444555555555555555555554322111 2566667777777777777777777776653
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHH-HHHHHHHH
Q 036577 390 MHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAF-KLFDEMRR 456 (470)
Q Consensus 390 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~ 456 (470)
+.+...+..+..+|...|++++|+..|++.++.... +...+..+..++...|+.+++. ..+..|..
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC-----------
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346677777777777777777777777777754322 4556666666666666666665 44555543
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.60 E-value=5e-07 Score=68.80 Aligned_cols=96 Identities=15% Similarity=0.122 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCC--CCCC----HHHHHH
Q 036577 325 TFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNR--CMHD----VFSYSI 398 (470)
Q Consensus 325 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~~ 398 (470)
.+..+...+.+.|++++|+..|++.++..+. +...|..+..+|...|++++|+..+++.++.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 4455555566666666666666666555433 45555556666666666666666665554421 0111 124445
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH
Q 036577 399 LINGYCKNKEIEGALSLYSEMLS 421 (470)
Q Consensus 399 l~~~~~~~g~~~~A~~~~~~~~~ 421 (470)
+..++...|++++|++.|++.++
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555555555555555554
No 154
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.59 E-value=4.9e-07 Score=70.43 Aligned_cols=99 Identities=11% Similarity=0.018 Sum_probs=80.9
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036577 322 NVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILIN 401 (470)
Q Consensus 322 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 401 (470)
+...+..+...+.+.|++++|...|+.+.+.++. +...|..+..++...|++++|...|++..... +.+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 3455666777888899999999999988887654 77888888888889999999999998888764 446777888888
Q ss_pred HHHHcCChhHHHHHHHHHHHC
Q 036577 402 GYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~ 422 (470)
+|...|++++|...|++.++.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 899999999999999888764
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.59 E-value=1.9e-06 Score=65.42 Aligned_cols=97 Identities=14% Similarity=-0.002 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036577 324 VTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGY 403 (470)
Q Consensus 324 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (470)
..+......+.+.|++++|...|++.++..+. +...|..+..++.+.|++++|...+++.++.. +.+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 34555556666666666666666666665433 55666666666666677777776666666543 33566666666667
Q ss_pred HHcCChhHHHHHHHHHHHC
Q 036577 404 CKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~ 422 (470)
...|++++|+..|++.++.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 7777777777776666643
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.57 E-value=7.5e-07 Score=67.65 Aligned_cols=97 Identities=14% Similarity=0.072 Sum_probs=86.4
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 036577 358 AFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIG 437 (470)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 437 (470)
...+..+...+.+.|++++|...|++.++.. +.+...|..+..+|.+.|++++|+..+++.++.... +...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 4567788889999999999999999998864 458899999999999999999999999999976432 57789999999
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 036577 438 LFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 438 ~~~~g~~~~A~~~~~~m~~ 456 (470)
+...|++++|.+.|++..+
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 9999999999999999987
No 157
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.56 E-value=2.5e-07 Score=88.01 Aligned_cols=126 Identities=10% Similarity=0.048 Sum_probs=104.0
Q ss_pred HHhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036577 72 ERFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151 (470)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 151 (470)
..+...|..+...|++++|++.|+++++..|. +..+|..+..++.+.|++++|++.+++..+.. +.+...+..+..+
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 83 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPS--NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 83 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 44567788889999999999999999999886 89999999999999999999999999999875 5678899999999
Q ss_pred HHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 036577 152 FCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKG--LCAESRIMEAAALFT 201 (470)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 201 (470)
|...|++++|.+.+++.++.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 84 ~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 84 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999998863 3344455556555 888899999999988
No 158
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.55 E-value=2e-07 Score=77.34 Aligned_cols=95 Identities=16% Similarity=-0.018 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036577 324 VTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGY 403 (470)
Q Consensus 324 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (470)
..+..+..+|...|++++|...++..++.... +...+..+..++...|++++|...|++..+.. +.+...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 34555555555566666666666655555322 45555555666666666666666666555442 22455555555555
Q ss_pred HHcCChhHHH-HHHHHHH
Q 036577 404 CKNKEIEGAL-SLYSEML 420 (470)
Q Consensus 404 ~~~g~~~~A~-~~~~~~~ 420 (470)
...++.+++. ..+..+.
T Consensus 167 ~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 5555555554 3344443
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.55 E-value=4.8e-06 Score=61.86 Aligned_cols=96 Identities=17% Similarity=0.106 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036577 325 TFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYC 404 (470)
Q Consensus 325 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 404 (470)
.+..+...+...|++++|...++...+.... +...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3444555555555666666655555554322 44555555555555666666666665555442 224555555666666
Q ss_pred HcCChhHHHHHHHHHHHC
Q 036577 405 KNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~ 422 (470)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 666666666666665543
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.53 E-value=2.2e-06 Score=65.20 Aligned_cols=96 Identities=9% Similarity=0.068 Sum_probs=54.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCC----HhHHHH
Q 036577 360 VYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGI--KPD----VVIYNT 433 (470)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~~ 433 (470)
.+..++..+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|++.+++.++... .++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 44555666666666666666666665543 33556666666666666666666666666554211 111 124555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 036577 434 LFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 434 l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
+..++...|++++|++.|++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 55666666666666666666655
No 161
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.52 E-value=1.2e-06 Score=64.59 Aligned_cols=99 Identities=8% Similarity=0.023 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCC--CHHHHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTP--DAVTFNSL 183 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l 183 (470)
+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|.+.+++.++.. +. +..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 55667777777778888888888888777654 4466677777777777788888887777777653 33 56677777
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhc
Q 036577 184 IKGLCAE-SRIMEAAALFTKLKAF 206 (470)
Q Consensus 184 ~~~~~~~-g~~~~a~~~~~~~~~~ 206 (470)
..++... |++++|.+.+++....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 7777777 7788888777777765
No 162
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.52 E-value=6.1e-06 Score=61.27 Aligned_cols=97 Identities=11% Similarity=0.012 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 036577 289 VTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGF 368 (470)
Q Consensus 289 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 368 (470)
..+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..+..+. +...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 344555555566666666666666665543 334555566666666666666666666666655332 455566666666
Q ss_pred HcCCCHHHHHHHHHHHHHC
Q 036577 369 CLTGRVNRAKELFVSMESN 387 (470)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~~ 387 (470)
...|++++|...++...+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 6666666666666666554
No 163
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.51 E-value=1.3e-06 Score=69.84 Aligned_cols=100 Identities=13% Similarity=0.081 Sum_probs=88.9
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036577 321 PNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILI 400 (470)
Q Consensus 321 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 400 (470)
.+...+..+...+.+.|++++|+..|++.++.... +...|..+..+|...|++++|+..|++.++.. +.+...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34567888889999999999999999999988654 78889999999999999999999999998875 44788999999
Q ss_pred HHHHHcCChhHHHHHHHHHHHC
Q 036577 401 NGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
.+|...|++++|+..|++.++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999875
No 164
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.51 E-value=3.4e-06 Score=67.43 Aligned_cols=101 Identities=12% Similarity=0.074 Sum_probs=88.1
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 036577 286 PNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLM 365 (470)
Q Consensus 286 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 365 (470)
.+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..+++.++.... +...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 356678888899999999999999999998875 557888999999999999999999999999988654 688899999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCC
Q 036577 366 DGFCLTGRVNRAKELFVSMESNR 388 (470)
Q Consensus 366 ~~~~~~g~~~~A~~~~~~~~~~~ 388 (470)
.++...|++++|...|++.++..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999987753
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.50 E-value=6.2e-06 Score=63.41 Aligned_cols=100 Identities=13% Similarity=-0.025 Sum_probs=67.6
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036577 321 PNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILI 400 (470)
Q Consensus 321 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 400 (470)
.+...+..+...+...|++++|...+...++..+. +...+..+..++...|++++|...++...+.. +.+...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 34556666666777777777777777776666433 56666777777777777777777777766653 33566777777
Q ss_pred HHHHHcCChhHHHHHHHHHHHC
Q 036577 401 NGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
.+|...|++++|+..|++.++.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 7777777777777777776643
No 166
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.47 E-value=1.6e-06 Score=65.36 Aligned_cols=92 Identities=11% Similarity=-0.023 Sum_probs=51.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 036577 363 TLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIH 442 (470)
Q Consensus 363 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 442 (470)
.+...+.+.|++++|...|++.++.. +.+...|..+..++...|++++|+..|++.++.... +...+..+..++...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 34445555566666666665555543 235555555666666666666666666665544221 3445555555666666
Q ss_pred CHHHHHHHHHHHHH
Q 036577 443 QVERAFKLFDEMRR 456 (470)
Q Consensus 443 ~~~~A~~~~~~m~~ 456 (470)
++++|+..+++..+
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666665554
No 167
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.47 E-value=2.1e-06 Score=80.70 Aligned_cols=198 Identities=10% Similarity=-0.060 Sum_probs=141.5
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCH---------------HHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHH--
Q 036577 82 ITTITPNEAFCIFDYMLNMRPSPPPV---------------SSFNILFGCLAKNKHYDTVLSLFKRLNST-GLFPDLY-- 143 (470)
Q Consensus 82 ~~~~~~~~A~~~f~~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-~~~~~~~-- 143 (470)
...|++++|++.|..+++..+...+. .++..++..|...|++++|.+.+..+.+. +..++..
T Consensus 15 ~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 4b4t_Q 15 VNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTV 94 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHH
Confidence 34679999999999999877652221 24778999999999999999999987653 1112221
Q ss_pred --HHHHHHHHHHhcCCcchHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----C
Q 036577 144 --TYNILINCFCKMGRVSPGFVVLGRILR----SCFTP-DAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEP-----N 211 (470)
Q Consensus 144 --~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~-----~ 211 (470)
+.+.+...+...|+.+.|.+++..... .+..+ -..++..+...|...|++++|..+++++...-... .
T Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~ 174 (434)
T 4b4t_Q 95 KVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSL 174 (434)
T ss_dssp HHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhH
Confidence 233344444567889999998887764 22222 25678889999999999999999999876431111 2
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCC--CHhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 036577 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEP--NTVTYTTIIDGLCKEGFVDKAKELFLKMKD 281 (470)
Q Consensus 212 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 281 (470)
..++..++..|...|++++|..++++......... .++ -...+..+...+...|++++|...|.+...
T Consensus 175 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 175 VDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY--CPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC--CchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45678889999999999999999998865432110 111 134566677778889999999988877654
No 168
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.46 E-value=2.5e-06 Score=62.74 Aligned_cols=96 Identities=10% Similarity=-0.063 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--CHhHHHHHHH
Q 036577 359 FVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP--DVVIYNTLFI 436 (470)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~ 436 (470)
..+..+...+...|++++|...+++..+.. +.+...|..+..++...|++++|+..+++.++.. +. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 344445555555555555555555554432 2244555555555555555555555555555432 11 2445555555
Q ss_pred HHHhc-CCHHHHHHHHHHHHH
Q 036577 437 GLFEI-HQVERAFKLFDEMRR 456 (470)
Q Consensus 437 ~~~~~-g~~~~A~~~~~~m~~ 456 (470)
.+... |++++|.+.+++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHhCCHHHHHHHHHHHhh
Confidence 55555 566666665555554
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.46 E-value=3.8e-06 Score=64.61 Aligned_cols=100 Identities=14% Similarity=0.052 Sum_probs=73.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHH
Q 036577 105 PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLI 184 (470)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 184 (470)
.++..|..+...+...|++++|+..|++..... +.+...+..+..++...|++++|...+++.++.. +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 467777777888888888888888888777664 4556777777777777777777777777777653 44566777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 036577 185 KGLCAESRIMEAAALFTKLKAF 206 (470)
Q Consensus 185 ~~~~~~g~~~~a~~~~~~~~~~ 206 (470)
.+|...|++++|+..|++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 7777777777777777776653
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.43 E-value=2.5e-06 Score=64.78 Aligned_cols=107 Identities=16% Similarity=0.193 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 036577 325 TFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRC--MHD----VFSYSI 398 (470)
Q Consensus 325 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~~ 398 (470)
.+..+...+...|++++|...++...+.... +...+..+...+...|++++|...+++...... .++ ...+..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 4455555566666666666666666555322 455555666666666666666666666554320 111 555666
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHH
Q 036577 399 LINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 434 (470)
Q Consensus 399 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 434 (470)
+..++...|++++|.+.|+++.+. .|+...+..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 666667777777777777766654 3344444333
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.40 E-value=1.9e-05 Score=74.08 Aligned_cols=170 Identities=10% Similarity=-0.083 Sum_probs=87.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCCC-CHH
Q 036577 215 YSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE----NINP-NVV 289 (470)
Q Consensus 215 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~ 289 (470)
+..++..|...|++++|.+.+..+.......+. ......+.+.+...+...|+++.|.++++..... +..+ -..
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK-SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH-HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 445566666666666666666665443211000 0000112222333333456666666666655431 1111 234
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHC--C--C-CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C-CC-C--H
Q 036577 290 TYNSLIHGFCYANDWNEAKCLLIEMMDQ--G--V-QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIG--V-RP-N--A 358 (470)
Q Consensus 290 ~~~~li~~~~~~~~~~~a~~~~~~~~~~--~--~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~-~~-~--~ 358 (470)
++..+...|...|++++|..++++.... + . +.....+..++..|...|++++|..+++...... . .| . .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 5566666677777777777776665432 1 0 1113456666667777777777777766654321 1 11 1 2
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 036577 359 FVYNTLMDGFCLTGRVNRAKELFVSME 385 (470)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (470)
..+..++..+...|++++|...|.+..
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 345555566666677777766665543
No 172
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.39 E-value=3.5e-07 Score=86.56 Aligned_cols=151 Identities=9% Similarity=-0.006 Sum_probs=119.2
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---------------HHHHHHH
Q 036577 84 TITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPD---------------LYTYNIL 148 (470)
Q Consensus 84 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~---------------~~~~~~l 148 (470)
.+++++|+..|+......+. ....|..+...+.+.|++++|+..|++..+.. +.+ ...|..+
T Consensus 247 l~~~~~A~~~~~~~~~~~~~--~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nl 323 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLE--QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNL 323 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHH
Confidence 34566777777666554443 67789999999999999999999999998753 223 5789999
Q ss_pred HHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 036577 149 INCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHT 228 (470)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 228 (470)
..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|+..|++..+.. +-+...+..+..++.+.++.
T Consensus 324 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 324 AMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEH 401 (457)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999874 5578899999999999999999999999998763 33567788888888888888
Q ss_pred HHHHH-HHHHHH
Q 036577 229 IVALN-LFEEMA 239 (470)
Q Consensus 229 ~~a~~-~~~~~~ 239 (470)
+++.+ .+..|.
T Consensus 402 ~~a~~~~~~~~f 413 (457)
T 1kt0_A 402 NERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHH
Confidence 77653 444443
No 173
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=2e-05 Score=61.29 Aligned_cols=100 Identities=14% Similarity=0.091 Sum_probs=67.0
Q ss_pred CCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHH
Q 036577 251 PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN----VVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTF 326 (470)
Q Consensus 251 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 326 (470)
.+...+..+...+...|++++|.+.|++..+. .|+ ...+..+..+|...|++++|...+++..+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 35566677777777777777777777777664 244 4566666667777777777777777766653 3345566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 036577 327 NVIMDELCKNGKMDEASRLLDLMIQIG 353 (470)
Q Consensus 327 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 353 (470)
..+..++...|++++|...+++..+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 666666777777777777777766653
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.39 E-value=4.6e-06 Score=62.75 Aligned_cols=95 Identities=12% Similarity=-0.051 Sum_probs=65.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 036577 326 FNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCK 405 (470)
Q Consensus 326 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 405 (470)
+..+...+.+.|++++|...++++++..+. +...|..+..++...|++++|+..|++.++.. +.+...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 444556667777777777777777776543 66667777777777777777777777776653 3366677777777777
Q ss_pred cCChhHHHHHHHHHHHC
Q 036577 406 NKEIEGALSLYSEMLSK 422 (470)
Q Consensus 406 ~g~~~~A~~~~~~~~~~ 422 (470)
.|++++|+..+++.++.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777777643
No 175
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=1.7e-05 Score=61.73 Aligned_cols=97 Identities=12% Similarity=0.003 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHH
Q 036577 287 NVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPN----VVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYN 362 (470)
Q Consensus 287 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 362 (470)
+...+..+...+...|++++|...|++..+. .|+ ...+..+..++...|++++|...+++..+.... +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 3444555555555555555555555555544 222 334444444555555555555555554444222 344444
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHH
Q 036577 363 TLMDGFCLTGRVNRAKELFVSMES 386 (470)
Q Consensus 363 ~l~~~~~~~g~~~~A~~~~~~~~~ 386 (470)
.+..++...|++++|...|++..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444445555555555444444
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.38 E-value=4.9e-06 Score=63.13 Aligned_cols=108 Identities=10% Similarity=0.092 Sum_probs=57.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CC----HhHHHH
Q 036577 290 TYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVR--PN----AFVYNT 363 (470)
Q Consensus 290 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 363 (470)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+.+.... ++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34445555555555555555555555443 334455555555556666666666666655544221 11 445556
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036577 364 LMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILI 400 (470)
Q Consensus 364 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 400 (470)
+..++...|++++|...|+...+.. |+...+..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~ 119 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHH
Confidence 6666666666666666666665542 3444444333
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.36 E-value=3e-06 Score=67.09 Aligned_cols=132 Identities=14% Similarity=0.105 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HhHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCC-CHH
Q 036577 325 TFNVIMDELCKNGKMDEASRLLDLMIQIGVR-PN----AFVYNTLMDGFCLTGRVNRAKELFVSMESN----RCMH-DVF 394 (470)
Q Consensus 325 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~ 394 (470)
++..+...+...|++++|...+++..+.... .+ ..++..+...+...|++++|...+++..+. +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455555556666666666666555443111 01 135566666677777777777777665432 1001 144
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 395 SYSILINGYCKNKEIEGALSLYSEMLSK----GIKP-DVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
.+..+..++...|++++|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5667777777888888888887776642 1111 134566777888888888888888888764
No 178
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.29 E-value=1.5e-05 Score=75.30 Aligned_cols=123 Identities=11% Similarity=-0.058 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---------------HhHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036577 288 VVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPN---------------VVTFNVIMDELCKNGKMDEASRLLDLMIQI 352 (470)
Q Consensus 288 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 352 (470)
...+..+...|.+.|++++|+..|++..+.. +.+ ...|..+..+|.+.|++++|+..++++++.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4456666666777777777777777766542 111 345555555555666666666666655555
Q ss_pred CCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 036577 353 GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGAL 413 (470)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 413 (470)
... +...|..+..+|...|++++|...|++.++.. +.+...+..+..++.+.|+.+++.
T Consensus 347 ~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 347 DSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred CCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 433 45555555555555566666665555555542 224445555555555555555444
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.28 E-value=1.6e-06 Score=64.93 Aligned_cols=87 Identities=9% Similarity=0.001 Sum_probs=65.9
Q ss_pred cCChhHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHH
Q 036577 84 TITPNEAFCIFDYMLNMRPS-PPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGF 162 (470)
Q Consensus 84 ~~~~~~A~~~f~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 162 (470)
.|++++|+..|+.+++.++. |.+..+|..+..++...|++++|+..|++..+.. +.+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 46788888888888887411 1256778888888888889999988888888765 556778888888888888888888
Q ss_pred HHHHHHHhC
Q 036577 163 VVLGRILRS 171 (470)
Q Consensus 163 ~~~~~~~~~ 171 (470)
..+++.++.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888887765
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.27 E-value=8.5e-06 Score=64.43 Aligned_cols=137 Identities=13% Similarity=0.017 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----cchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCC
Q 036577 178 VTFNSLIKGLCAESRIMEAAALFTKLKAFGCE-PN----VITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPN 252 (470)
Q Consensus 178 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 252 (470)
.++..+...+...|++++|+..+++..+.... .+ ..++..+...+...|++++|.+.+++........+. ....
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~ 88 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-RAVE 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-cHHH
Confidence 45666777777778888887777776543110 01 135666777777888888888888776653210000 0111
Q ss_pred HhhHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036577 253 TVTYTTIIDGLCKEGFVDKAKELFLKMKDE----NIN-PNVVTYNSLIHGFCYANDWNEAKCLLIEMM 315 (470)
Q Consensus 253 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 315 (470)
...+..+...+...|++++|.+.+++.... +.. .....+..+...+...|++++|...+++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 345666666777777777777777665432 100 012234444444555555555555554443
No 181
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.27 E-value=1.7e-05 Score=76.76 Aligned_cols=173 Identities=10% Similarity=-0.017 Sum_probs=146.3
Q ss_pred hhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 036577 87 PNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKH----------YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156 (470)
Q Consensus 87 ~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 156 (470)
-++|++.++.++..+|. +..+|+.--.++.+.|+ ++++++.++.+.+.. +-+..+|..-..++.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~--~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 45 DESVLELTSQILGANPD--FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp SHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHCch--hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 47899999999999987 89999998888888877 999999999999876 678889999999999999
Q ss_pred --CcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc--------
Q 036577 157 --RVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAES-RIMEAAALFTKLKAFGCEPNVITYSTLINGLCRT-------- 225 (470)
Q Consensus 157 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-------- 225 (470)
+++++++.++++++.. +-+..+|+.-.-.+.+.| .++++++.++++.+.. +.|..+|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence 6699999999999975 558889999888888889 8999999999998764 44778888877776653
Q ss_pred ------CChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHH
Q 036577 226 ------GHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDK 271 (470)
Q Consensus 226 ------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 271 (470)
+.++++++.++++...+ +-+...|..+-..+.+.++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~-------P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD-------PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC-------SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhC-------CCCccHHHHHHHHHhcCCCccc
Confidence 55789999999998876 6678888888888877776444
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.26 E-value=3e-06 Score=80.57 Aligned_cols=117 Identities=13% Similarity=0.055 Sum_probs=53.1
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHH
Q 036577 298 FCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRA 377 (470)
Q Consensus 298 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 377 (470)
+.+.|++++|.+.+++..+.. +.+...|..+..+|.+.|++++|...+++..+.... +...+..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 444555555555555555442 233445555555555555555555555555554322 344455555555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH--HHHcCChhHHHHHHH
Q 036577 378 KELFVSMESNRCMHDVFSYSILING--YCKNKEIEGALSLYS 417 (470)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 417 (470)
.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555544432 1122233333333 444455555555444
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.26 E-value=3.2e-05 Score=58.57 Aligned_cols=93 Identities=16% Similarity=0.084 Sum_probs=57.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---hHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 036577 328 VIMDELCKNGKMDEASRLLDLMIQIGVRPNA---FVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHD---VFSYSILIN 401 (470)
Q Consensus 328 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~ 401 (470)
.+...+...|++++|...++.+.+..+. +. ..+..+..++...|++++|...|+.+.+.. +.+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence 3445566666677777666666665332 22 355566666666777777777776666543 122 455666666
Q ss_pred HHHHcCChhHHHHHHHHHHHC
Q 036577 402 GYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~ 422 (470)
++...|++++|...|+++++.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777776654
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.24 E-value=6.5e-06 Score=65.56 Aligned_cols=103 Identities=14% Similarity=0.072 Sum_probs=80.6
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CC---------CCCHhHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 036577 323 VVTFNVIMDELCKNGKMDEASRLLDLMIQI--------GV---------RPNAFVYNTLMDGFCLTGRVNRAKELFVSME 385 (470)
Q Consensus 323 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (470)
...+......+.+.|++++|+..|...++. .. +.+...|..+..+|.+.|++++|...++..+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456777888899999999999999988775 11 1134577788888888899999998888888
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 036577 386 SNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDV 428 (470)
Q Consensus 386 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 428 (470)
+.. +.+...|..+..+|...|++++|+..|++.++. .|+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 764 447888888888888899999999888888865 4443
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.23 E-value=1.6e-05 Score=72.67 Aligned_cols=91 Identities=12% Similarity=-0.062 Sum_probs=65.6
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 036577 357 NAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFI 436 (470)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 436 (470)
+...|..+..+|.+.|++++|...+++.++.. +.+...|..+..+|...|++++|++.|+++++.... +...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45667777788888888888888888887754 346777888888888888888888888888765322 4556666666
Q ss_pred HHHhcCCHHHHHH
Q 036577 437 GLFEIHQVERAFK 449 (470)
Q Consensus 437 ~~~~~g~~~~A~~ 449 (470)
.+...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7766676666644
No 186
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.23 E-value=6.6e-05 Score=56.76 Aligned_cols=92 Identities=9% Similarity=0.038 Sum_probs=50.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCH---hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HhHHHHHHHH
Q 036577 294 LIHGFCYANDWNEAKCLLIEMMDQGVQPNV---VTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPN---AFVYNTLMDG 367 (470)
Q Consensus 294 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 367 (470)
+...+...|++++|...|+.+.+.. +.+. ..+..+..++...|++++|...++.+.+..+. + ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 3444555566666666665555542 1122 34455555566666666666666666555332 2 3445555666
Q ss_pred HHcCCCHHHHHHHHHHHHHC
Q 036577 368 FCLTGRVNRAKELFVSMESN 387 (470)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~~ 387 (470)
+...|++++|...|+.+.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666666554
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.18 E-value=3.1e-05 Score=61.54 Aligned_cols=101 Identities=12% Similarity=0.071 Sum_probs=84.3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--------C---------CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036577 287 NVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ--------G---------VQPNVVTFNVIMDELCKNGKMDEASRLLDLM 349 (470)
Q Consensus 287 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 349 (470)
....+......+.+.|++++|+..|.+.++. . .+.+...|..+..+|.+.|++++|+..++.+
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3556778888899999999999999998765 1 0223467888889999999999999999999
Q ss_pred HHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 036577 350 IQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNR 388 (470)
Q Consensus 350 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 388 (470)
++.++. +...|..+..+|...|++++|...|+......
T Consensus 90 l~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 90 LKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 988644 78889999999999999999999999988863
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.17 E-value=2.4e-05 Score=71.54 Aligned_cols=91 Identities=12% Similarity=-0.087 Sum_probs=65.9
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036577 322 NVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILIN 401 (470)
Q Consensus 322 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 401 (470)
+...|..+..+|.+.|++++|+..++++++.... +...+..+..+|...|++++|...|++..+.. +.+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3456777777788888888888888888876543 56777778888888888888888888877653 336667777777
Q ss_pred HHHHcCChhHHHH
Q 036577 402 GYCKNKEIEGALS 414 (470)
Q Consensus 402 ~~~~~g~~~~A~~ 414 (470)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7776666666554
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.15 E-value=6e-06 Score=61.65 Aligned_cols=87 Identities=10% Similarity=-0.041 Sum_probs=47.9
Q ss_pred cCCcchHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 036577 155 MGRVSPGFVVLGRILRSC--FTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVAL 232 (470)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~ 232 (470)
.|++++|+..|++.++.+ -+.+..++..+..+|...|++++|+..|++..+.. +-+...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 455566666666665542 12234555666666666666666666666665542 223455556666666666666666
Q ss_pred HHHHHHHhcC
Q 036577 233 NLFEEMANGN 242 (470)
Q Consensus 233 ~~~~~~~~~~ 242 (470)
..+++.....
T Consensus 82 ~~~~~al~~~ 91 (117)
T 3k9i_A 82 ELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 6666665543
No 190
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.14 E-value=0.00013 Score=56.07 Aligned_cols=110 Identities=14% Similarity=0.025 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChhHHH
Q 036577 338 KMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCK----NKEIEGAL 413 (470)
Q Consensus 338 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 413 (470)
++++|...|++..+.|. ++.. +...|...+.+++|.+.|++..+.+ +...+..+...|.. .+++++|+
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 34455555555555441 1221 4444444445555555555555543 44455555555554 45555555
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 036577 414 SLYSEMLSKGIKPDVVIYNTLFIGLFE----IHQVERAFKLFDEMRRDG 458 (470)
Q Consensus 414 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g 458 (470)
++|++..+.| +...+..|...|.. .++.++|.++|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555555442 34444445555554 455555555555555544
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.13 E-value=4e-05 Score=59.61 Aligned_cols=62 Identities=13% Similarity=0.120 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHC-----CCCCC-HhHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 395 SYSILINGYCKNKEIEGALSLYSEMLSK-----GIKPD-VVIY----NTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
.|..+..++.+.|++++|+..+++.++. .+.|+ ...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6777777777777777777777777653 11444 3466 7777888888888888888888764
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.12 E-value=0.00017 Score=69.88 Aligned_cols=154 Identities=6% Similarity=0.007 Sum_probs=113.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCC
Q 036577 303 DWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGK----------MDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTG 372 (470)
Q Consensus 303 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 372 (470)
..++|++.++++.+.. +-+...|+.--.++...|+ +++++..++.+.+..++ +..+|+.-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 3456777777777664 4455566666556666665 78888888888887766 7778887777777888
Q ss_pred --CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc--------
Q 036577 373 --RVNRAKELFVSMESNRCMHDVFSYSILINGYCKNK-EIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEI-------- 441 (470)
Q Consensus 373 --~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-------- 441 (470)
+++++.+.++++.+.+ +-|..+|+.-..++.+.| .++++++.++++++..+. |...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 6688888888888765 447888888888888888 788888888888876544 677888777766653
Q ss_pred ------CCHHHHHHHHHHHHHcCCCCC
Q 036577 442 ------HQVERAFKLFDEMRRDGVAAD 462 (470)
Q Consensus 442 ------g~~~~A~~~~~~m~~~g~~p~ 462 (470)
+.++++.+++++++. +.|+
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~--~~P~ 224 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFF--TDPN 224 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHH--HCSS
T ss_pred cccccHHHHHHHHHHHHHHHh--hCCC
Confidence 557888888888876 4454
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.11 E-value=4.1e-06 Score=75.76 Aligned_cols=149 Identities=11% Similarity=0.070 Sum_probs=74.1
Q ss_pred HHhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036577 72 ERFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151 (470)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 151 (470)
..+...|..+...|++++|+..|+.++...|. +. .+...++++++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~--~~--------~~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGD--DF--------MFQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCH--HH--------HHTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc--ch--------hhhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 34555566677778888888888887776543 21 1112233333322211 1267777778
Q ss_pred HHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHH-HHhcCChHH
Q 036577 152 FCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLING-LCRTGHTIV 230 (470)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~g~~~~ 230 (470)
+.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|++..+.. +.+...+..+... ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888877753 4466777788888888888888888888876542 2234444444444 234456677
Q ss_pred HHHHHHHHHhcC
Q 036577 231 ALNLFEEMANGN 242 (470)
Q Consensus 231 a~~~~~~~~~~~ 242 (470)
+.+.|..+....
T Consensus 318 a~~~~~~~l~~~ 329 (338)
T 2if4_A 318 QKEMYKGIFKGK 329 (338)
T ss_dssp ------------
T ss_pred HHHHHHHhhCCC
Confidence 777777776654
No 194
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.09 E-value=2.2e-05 Score=74.22 Aligned_cols=124 Identities=10% Similarity=0.006 Sum_probs=74.8
Q ss_pred HHHcCCHHHHHHHHHHHHHc-----CCC-C-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHHC-----C--CCCCHHHHHH
Q 036577 333 LCKNGKMDEASRLLDLMIQI-----GVR-P-NAFVYNTLMDGFCLTGRVNRAKELFVSMESN-----R--CMHDVFSYSI 398 (470)
Q Consensus 333 ~~~~g~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~ 398 (470)
+...|++++|..++++.++. |.. | ...+++.|+.+|...|++++|+.++++.++. | .+....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777777666543 111 1 2345667777777777777777777665431 1 1124555677
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH-----CCC-CCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 399 LINGYCKNKEIEGALSLYSEMLS-----KGI-KPDV-VIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 399 l~~~~~~~g~~~~A~~~~~~~~~-----~~~-~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
|...|...|++++|..++++.++ .|. .|+. .+...+..++...|.+++|..++.++++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777776653 122 1222 2444555666677777777777777764
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.08 E-value=1.4e-05 Score=72.22 Aligned_cols=60 Identities=17% Similarity=0.099 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 036577 325 TFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSME 385 (470)
Q Consensus 325 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (470)
.|..+..+|.+.|++++|+..+++.++.... +...|..+..+|...|++++|...|++..
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al 291 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQ 291 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444555555555555544444322 34444444444444444444444444443
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.07 E-value=7.5e-05 Score=58.05 Aligned_cols=95 Identities=11% Similarity=-0.033 Sum_probs=69.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------C-----HhHHHHHHHHHHcCCCHHHHHHHHHHHHHC-------
Q 036577 326 FNVIMDELCKNGKMDEASRLLDLMIQIGVRP------N-----AFVYNTLMDGFCLTGRVNRAKELFVSMESN------- 387 (470)
Q Consensus 326 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------- 387 (470)
+......+.+.|++++|+..|++.++..+.. + ...|..+..++.+.|++++|+..+++.++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 4445555666677777777777766653321 2 237888888888888888888888888774
Q ss_pred CCCCCHHHH----HHHHHHHHHcCChhHHHHHHHHHHH
Q 036577 388 RCMHDVFSY----SILINGYCKNKEIEGALSLYSEMLS 421 (470)
Q Consensus 388 ~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (470)
+ +.+...| .....++...|++++|+..|++.++
T Consensus 94 ~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 N-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp T-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3 2366677 8889999999999999999998875
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.06 E-value=0.00019 Score=55.11 Aligned_cols=110 Identities=11% Similarity=-0.008 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc----CCCHHHHH
Q 036577 303 DWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCL----TGRVNRAK 378 (470)
Q Consensus 303 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 378 (470)
++++|...|++..+.| .++.. +...|...+..++|...|++..+.| +...+..|...|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666665 33322 5555555566666777777766653 45566666666665 66777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCC
Q 036577 379 ELFVSMESNRCMHDVFSYSILINGYCK----NKEIEGALSLYSEMLSKG 423 (470)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 423 (470)
..|++..+.+ +...+..|...|.. .+++++|.++|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777777665 56666777777776 677777777777777664
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.04 E-value=2.6e-05 Score=73.69 Aligned_cols=126 Identities=9% Similarity=-0.021 Sum_probs=95.3
Q ss_pred HHHccCCHHHHHHHHHHHHHC-----C-CCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC-C-CHhHHH
Q 036577 297 GFCYANDWNEAKCLLIEMMDQ-----G-VQP-NVVTFNVIMDELCKNGKMDEASRLLDLMIQI-----GVR-P-NAFVYN 362 (470)
Q Consensus 297 ~~~~~~~~~~a~~~~~~~~~~-----~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~-~-~~~~~~ 362 (470)
.+...|++++|+.++++.++. | -.| ...+++.+..+|...|++++|..++++.++. |.. | ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999999887653 1 112 2457888999999999999999999887653 322 2 246788
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHH-----CC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 363 TLMDGFCLTGRVNRAKELFVSMES-----NR--CMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 363 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
.|...|...|++++|+.++++..+ .| .+....+.+.+..++...|.+++|..++.++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988754 23 1224455677778888899999999999998763
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.03 E-value=3.3e-05 Score=57.26 Aligned_cols=80 Identities=11% Similarity=-0.019 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHH
Q 036577 88 NEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGR 167 (470)
Q Consensus 88 ~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 167 (470)
++|+..|+.+++..|. +...|..+...+...|++++|+..|++..+.. +.+...|..+..++...|++++|...|++
T Consensus 2 ~~a~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLAQGTD--NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHTTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3577788888877765 77788888888888888888888888877764 45566777777777777777777777777
Q ss_pred HHh
Q 036577 168 ILR 170 (470)
Q Consensus 168 ~~~ 170 (470)
.++
T Consensus 79 al~ 81 (115)
T 2kat_A 79 GLA 81 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.91 E-value=9.6e-06 Score=59.62 Aligned_cols=89 Identities=11% Similarity=0.025 Sum_probs=53.5
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-------Hh
Q 036577 357 NAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD-------VV 429 (470)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~ 429 (470)
+...+..+...+...|++++|...|++.++.. +.+...|..+..++...|++++|++.+++.++. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 34456666666777777777777777666543 335666777777777777777777777777644 333 33
Q ss_pred HHHHHHHHHHhcCCHHHHH
Q 036577 430 IYNTLFIGLFEIHQVERAF 448 (470)
Q Consensus 430 ~~~~l~~~~~~~g~~~~A~ 448 (470)
.+..+..++...|+.++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHHHHhHhhhH
Confidence 4444444454444444443
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.89 E-value=4.5e-05 Score=59.18 Aligned_cols=84 Identities=6% Similarity=0.001 Sum_probs=65.1
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChH----------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 036577 85 ITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYD----------TVLSLFKRLNSTGLFPDLYTYNILINCFCK 154 (470)
Q Consensus 85 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 154 (470)
+.+++|++.|+..++.+|. ++..|..+..++...++++ +|+..|++.++.+ +.+..+|..+..+|..
T Consensus 16 ~~feeA~~~~~~Ai~l~P~--~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL--DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHH
Confidence 4689999999999999987 8999999999998887764 7888888877765 5566777778777776
Q ss_pred cC-----------CcchHHHHHHHHHhC
Q 036577 155 MG-----------RVSPGFVVLGRILRS 171 (470)
Q Consensus 155 ~g-----------~~~~a~~~~~~~~~~ 171 (470)
.| ++++|.+.|++.++.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 64 566666666666654
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.87 E-value=2.3e-05 Score=60.82 Aligned_cols=87 Identities=7% Similarity=-0.080 Sum_probs=59.9
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCH----------HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036577 334 CKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRV----------NRAKELFVSMESNRCMHDVFSYSILINGY 403 (470)
Q Consensus 334 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (470)
.+.+.+++|...++..++..+. +...|..+..++...+++ ++|+..|++.++.+ +.+...|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 4556677888888888777654 777777777777776654 47777777776654 33666777777777
Q ss_pred HHcC-----------ChhHHHHHHHHHHHC
Q 036577 404 CKNK-----------EIEGALSLYSEMLSK 422 (470)
Q Consensus 404 ~~~g-----------~~~~A~~~~~~~~~~ 422 (470)
...| ++++|++.|++.++.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 6653 677777777777654
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.84 E-value=2.9e-05 Score=56.90 Aligned_cols=93 Identities=13% Similarity=-0.017 Sum_probs=58.6
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC------HHHH
Q 036577 323 VVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHD------VFSY 396 (470)
Q Consensus 323 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~ 396 (470)
...+..+...+...|++++|...+++.++..+. +...+..+..++...|++++|...+++.++.. +.+ ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHH
Confidence 445566666667777777777777777666433 56666677777777777777777777776653 122 4455
Q ss_pred HHHHHHHHHcCChhHHHHHHH
Q 036577 397 SILINGYCKNKEIEGALSLYS 417 (470)
Q Consensus 397 ~~l~~~~~~~g~~~~A~~~~~ 417 (470)
..+..++...|+.+.|+..++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHH
Confidence 556666666666665554443
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.84 E-value=7.8e-05 Score=55.17 Aligned_cols=79 Identities=14% Similarity=0.096 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 036577 341 EASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEML 420 (470)
Q Consensus 341 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 420 (470)
+|...+++..+..+. +...+..+...+...|++++|...|++.++.. +.+...|..+..+|...|++++|...|++.+
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555665555432 55666666666666667777766666666543 3355666666666777777777777766665
Q ss_pred H
Q 036577 421 S 421 (470)
Q Consensus 421 ~ 421 (470)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.78 E-value=0.00019 Score=50.14 Aligned_cols=81 Identities=14% Similarity=0.110 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036577 107 VSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKG 186 (470)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (470)
...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4556666666777777777777777766553 3455566666666666666666666666666542 3344555555544
Q ss_pred HHh
Q 036577 187 LCA 189 (470)
Q Consensus 187 ~~~ 189 (470)
+..
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.75 E-value=0.00034 Score=48.79 Aligned_cols=79 Identities=15% Similarity=0.139 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 036577 359 FVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGL 438 (470)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 438 (470)
..+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+... .+...+..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 344455555555555555555555555432 22455555555556666666666666665554321 1333444444444
Q ss_pred H
Q 036577 439 F 439 (470)
Q Consensus 439 ~ 439 (470)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.72 E-value=0.0006 Score=60.81 Aligned_cols=70 Identities=9% Similarity=-0.122 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 036577 392 DVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTWT 465 (470)
Q Consensus 392 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 465 (470)
+..+|..+...+...|++++|...+++++..+ |+...|..+...+...|++++|.+.+++... +.|...|
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t 345 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANT 345 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcCh
Confidence 45555555444444555555555555555442 4444444444555555555555555555554 3444433
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.57 E-value=0.00046 Score=49.44 Aligned_cols=65 Identities=18% Similarity=0.198 Sum_probs=53.3
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 357 NAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
+...+..+..+|...|++++|...|++.++.. +.+...|..+..+|...|++++|++.|++.++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56778888888888999999999998888764 336778888888899999999999888887653
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.51 E-value=0.00039 Score=49.84 Aligned_cols=64 Identities=17% Similarity=0.104 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 170 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 170 (470)
++.+|..+..++.+.|++++|+..|++..+.+ +.+...|..+..+|...|++++|.+.+++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56677777777777777777777777776654 44555666777777777777777777766654
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.35 E-value=0.0062 Score=54.35 Aligned_cols=135 Identities=7% Similarity=-0.048 Sum_probs=95.3
Q ss_pred CCHHHHHHHHHHHHh--c---CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCcc-h-H---HHHHHHHHh-
Q 036577 105 PPVSSFNILFGCLAK--N---KHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK---MGRVS-P-G---FVVLGRILR- 170 (470)
Q Consensus 105 ~~~~~~~~l~~~~~~--~---~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~---~g~~~-~-a---~~~~~~~~~- 170 (470)
.+..+|...+++... . .+..+|+.+|++..+.. +.....|..+..+|.. .+... . . ...++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 477888888876543 2 34578999999999874 4445666655554432 11111 1 1 111222111
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 036577 171 SCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242 (470)
Q Consensus 171 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 242 (470)
...+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++....+
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 1225678888888888888899999999999999875 777777788889999999999999999998864
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.29 E-value=0.00097 Score=61.89 Aligned_cols=85 Identities=9% Similarity=-0.015 Sum_probs=50.2
Q ss_pred CCCHHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-----C-CCCCH-hHHHHHHH
Q 036577 371 TGRVNRAKELFVSMESN---RCMH----DVFSYSILINGYCKNKEIEGALSLYSEMLSK-----G-IKPDV-VIYNTLFI 436 (470)
Q Consensus 371 ~g~~~~A~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~-~~~~~l~~ 436 (470)
.|++++|+.++++.++. -..| ...+++.+..+|...|++++|+.++++.++- | -.|+. .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45666666666655431 1111 3455666677777777777777776665531 2 12332 36666777
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 036577 437 GLFEIHQVERAFKLFDEMR 455 (470)
Q Consensus 437 ~~~~~g~~~~A~~~~~~m~ 455 (470)
.|..+|++++|..++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 7777777777777777665
No 212
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.21 E-value=0.0017 Score=49.83 Aligned_cols=81 Identities=12% Similarity=0.001 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCChhHHHH
Q 036577 340 DEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTG---RVNRAKELFVSMESNRCMH--DVFSYSILINGYCKNKEIEGALS 414 (470)
Q Consensus 340 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 414 (470)
..+.+-|.+..+.+. ++..+...+..++++.+ +.+++..+++.+.+.. .| +...+-.+.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344445555544443 35555555666666655 4446666666665543 12 34444455555666666666666
Q ss_pred HHHHHHHC
Q 036577 415 LYSEMLSK 422 (470)
Q Consensus 415 ~~~~~~~~ 422 (470)
.++.+++.
T Consensus 93 y~~~lL~i 100 (152)
T 1pc2_A 93 YVRGLLQT 100 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 66666643
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.19 E-value=0.0011 Score=61.47 Aligned_cols=87 Identities=7% Similarity=-0.093 Sum_probs=65.2
Q ss_pred HcCCHHHHHHHHHHHHHc-----CCC-C-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHHC-----C--CCCCHHHHHHHH
Q 036577 335 KNGKMDEASRLLDLMIQI-----GVR-P-NAFVYNTLMDGFCLTGRVNRAKELFVSMESN-----R--CMHDVFSYSILI 400 (470)
Q Consensus 335 ~~g~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~l~ 400 (470)
..|++++|..++++..+. |.. | ...+++.|+.+|...|++++|+.++++.++. | .+....+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357888888888887653 211 1 2467888899999999999999988887542 2 122566788899
Q ss_pred HHHHHcCChhHHHHHHHHHHH
Q 036577 401 NGYCKNKEIEGALSLYSEMLS 421 (470)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~ 421 (470)
..|...|++++|+.++++.++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988764
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.16 E-value=0.0038 Score=58.03 Aligned_cols=87 Identities=9% Similarity=-0.073 Sum_probs=40.7
Q ss_pred HcCCCHHHHHHHHHHHHHCC---CCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-----C-CCCC-HhHHHHH
Q 036577 369 CLTGRVNRAKELFVSMESNR---CMH----DVFSYSILINGYCKNKEIEGALSLYSEMLSK-----G-IKPD-VVIYNTL 434 (470)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~-~~~~~~l 434 (470)
...|++++|+.++++..+.. ..| ...+++.++.+|...|++++|+.+++++++- | ..|+ ..+++.|
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 34455555555555544321 011 2334455555555555555555555544421 1 1122 2245555
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 036577 435 FIGLFEIHQVERAFKLFDEMR 455 (470)
Q Consensus 435 ~~~~~~~g~~~~A~~~~~~m~ 455 (470)
...|..+|++++|..++++..
T Consensus 378 a~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHH
Confidence 555555555555555555554
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.06 E-value=0.0032 Score=58.48 Aligned_cols=98 Identities=12% Similarity=-0.043 Sum_probs=68.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCC-CcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC-----C--CCCCHHH
Q 036577 219 INGLCRTGHTIVALNLFEEMANGNGEI-GVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE-----N--INPNVVT 290 (470)
Q Consensus 219 ~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~ 290 (470)
+..+.+.|++++|+.++++........ +...+....+++.+..+|...|++++|+.+++++... | .+....+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 455667899999999999998764332 2222234567888888999999999999888877541 1 1122355
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHH
Q 036577 291 YNSLIHGFCYANDWNEAKCLLIEMMD 316 (470)
Q Consensus 291 ~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (470)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 67777777778888877777776653
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.93 E-value=0.0023 Score=45.41 Aligned_cols=57 Identities=16% Similarity=0.192 Sum_probs=34.9
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 365 MDGFCLTGRVNRAKELFVSMESNRCMHDVF-SYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
+..+...|++++|...+++..+.. +.+.. .|..+..+|...|++++|++.|++.++.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 444555666666666666665543 22455 6666666666666666666666666654
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.92 E-value=0.027 Score=57.26 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=22.4
Q ss_pred HhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036577 153 CKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKL 203 (470)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 203 (470)
...|++++|.++.+. ..+...|..+...+.+.++++.|++.|.++
T Consensus 663 l~~~~~~~A~~~~~~------~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTD------ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTT------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHh------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344555555544322 124445555555555555555555555544
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.90 E-value=0.0063 Score=42.64 Aligned_cols=66 Identities=9% Similarity=0.033 Sum_probs=47.3
Q ss_pred CCHhHHHHHHHHHHcCCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 356 PNAFVYNTLMDGFCLTGR---VNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 356 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
.+...+..+..++...++ .++|..++++.++.. +-+......+...+.+.|++++|+..|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456667777777654444 678888887777764 446777777777788888888888888888765
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.90 E-value=0.0036 Score=44.36 Aligned_cols=54 Identities=11% Similarity=0.163 Sum_probs=44.2
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036577 82 ITTITPNEAFCIFDYMLNMRPSPPPVS-SFNILFGCLAKNKHYDTVLSLFKRLNSTG 137 (470)
Q Consensus 82 ~~~~~~~~A~~~f~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~~~ 137 (470)
...|++++|+..|+.+++..|. +.. .|..+..++...|++++|+..|++..+..
T Consensus 11 ~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 11 INQGDIENALQALEEFLQTEPV--GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHTCHHHHHHHHHHHHHHCSS--THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4567888888888888888776 677 88888888888888888888888887764
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.81 E-value=0.2 Score=42.97 Aligned_cols=110 Identities=15% Similarity=0.157 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHcCCC-CCHhHHHHHHHHHHcC-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CChhH
Q 036577 339 MDEASRLLDLMIQIGVR-PNAFVYNTLMDGFCLT-----GRVNRAKELFVSMESNRCMHDVFSYSILINGYCKN-KEIEG 411 (470)
Q Consensus 339 ~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~ 411 (470)
...|...+++.++.+.. .+...|..++..|.+. |+.++|.+.|++.++.+..-+..++....+.++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 46778888888887432 1256888899999884 99999999999999875222478888888888884 99999
Q ss_pred HHHHHHHHHHCCCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 412 ALSLYSEMLSKGIK--PDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 412 A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
|.+.+++.+..... |+....+. +.-++|..+++++.+
T Consensus 259 a~~~L~kAL~a~p~~~P~~~lan~--------~~q~eA~~LL~~~~d 297 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLLVI--------LSQKRARWLKAHVQD 297 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHHHH--------HHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHHHH--------HHHHHHHHHHHHhHH
Confidence 99999999987665 55444433 234566666665543
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.72 E-value=0.011 Score=42.55 Aligned_cols=67 Identities=12% Similarity=-0.009 Sum_probs=49.1
Q ss_pred CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 356 PNAFVYNTLMDGFCLTGRVNRAKELFVSMESNR------CMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 356 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
.+..-+..++..+...|++..|...|+...+.. ..+....+..+..++.+.|++++|+..++++.+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 345556677888888888888888887765531 1235667788888888888888888888888754
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.67 E-value=0.027 Score=57.27 Aligned_cols=27 Identities=7% Similarity=-0.010 Sum_probs=13.1
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036577 323 VVTFNVIMDELCKNGKMDEASRLLDLM 349 (470)
Q Consensus 323 ~~~~~~l~~~~~~~g~~~~a~~~~~~~ 349 (470)
...|..+...+.+.++++.|.+.|..+
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344444444555555555555444444
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.62 E-value=0.019 Score=40.16 Aligned_cols=67 Identities=18% Similarity=0.179 Sum_probs=40.3
Q ss_pred CCCHhHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 036577 320 QPNVVTFNVIMDELCKNGK---MDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESN 387 (470)
Q Consensus 320 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (470)
+.+...+..+..++...++ .++|..++++.++.++. +......+...+.+.|++++|...|+++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455555555555544433 46666666666666544 5566666666666666666666666666654
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.45 E-value=0.23 Score=39.01 Aligned_cols=44 Identities=16% Similarity=0.305 Sum_probs=20.5
Q ss_pred hcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036577 154 KMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKL 203 (470)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 203 (470)
+.|+++.|.++.+.+ .+...|..|.......|+++-|++.|.+.
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 344444444444332 13444555555555555555555554444
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.36 E-value=0.13 Score=40.49 Aligned_cols=130 Identities=12% Similarity=0.120 Sum_probs=96.8
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHH
Q 036577 296 HGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVN 375 (470)
Q Consensus 296 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 375 (470)
......|+++.|.++.+++ .+...|..+.......|+++-|.+.|.... | +..+.-.|...|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~------D---~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH------S---FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT------C---HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC------C---HHHHHHHHHHhCCHH
Confidence 4456889999999987765 478899999999999999999999998875 2 344555566789988
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036577 376 RAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMR 455 (470)
Q Consensus 376 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (470)
+-.++-+.....| -++....++...|++++++++|.+. |-.|.... .....|-.+.|.++.+.+-
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA~~------~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG---GSLPLAYA------VAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT---TCHHHHHH------HHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC---CChHHHHH------HHHHcCcHHHHHHHHHHhC
Confidence 8887776666554 2566677788899999999998665 43332221 1223678888988887763
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.22 E-value=0.019 Score=42.28 Aligned_cols=64 Identities=16% Similarity=-0.010 Sum_probs=26.9
Q ss_pred CHhHHHHHHHHHHcCCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 036577 357 NAFVYNTLMDGFCLTGRVNR---AKELFVSMESNRCMH--DVFSYSILINGYCKNKEIEGALSLYSEMLS 421 (470)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (470)
+..+--.+..++.+..+... ++.+++.+...+ .| .....-.+.-++.+.|++++|.+.++.+++
T Consensus 34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44444444444444444333 444444444432 11 222223334444445555555555554443
No 227
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.08 E-value=0.28 Score=36.28 Aligned_cols=66 Identities=12% Similarity=0.022 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 036577 393 VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGV 459 (470)
Q Consensus 393 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 459 (470)
....+..+..+...|+-|.-.+++..+.. +.+|++.....+..||.+.|+..+|.++++++-+.|+
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 34445555555566666666666555432 2344555555566666666666666666666665554
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.07 E-value=0.06 Score=41.19 Aligned_cols=82 Identities=11% Similarity=-0.033 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCC--CHhHHHHHHHHHHcCCCHHHHH
Q 036577 304 WNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNG---KMDEASRLLDLMIQIGVRP--NAFVYNTLMDGFCLTGRVNRAK 378 (470)
Q Consensus 304 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 378 (470)
...+.+.|.+..+.+ +++..+...+..++++.+ +.++++.+++...+.+ .| ....+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 344444555444444 345555555555555555 3445666666655543 12 2233334444555666666666
Q ss_pred HHHHHHHHC
Q 036577 379 ELFVSMESN 387 (470)
Q Consensus 379 ~~~~~~~~~ 387 (470)
++++.+++.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666665554
No 229
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.94 E-value=0.33 Score=35.93 Aligned_cols=63 Identities=16% Similarity=0.143 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 036577 215 YSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENI 284 (470)
Q Consensus 215 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 284 (470)
....+..+...|.-++-.+++..+.... +|++...-.+..+|.+.|+..+|.+++.+.-+.|+
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n~-------~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKNN-------EVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC--C-------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhccC-------CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3344444445555555555555543322 44455555555555555555555555555555443
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.88 E-value=0.032 Score=47.76 Aligned_cols=90 Identities=16% Similarity=0.066 Sum_probs=56.4
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCc
Q 036577 85 ITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKN-----KHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM-GRV 158 (470)
Q Consensus 85 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~ 158 (470)
+....|..+++++++.+|.-.+-.+|..+...|.+. |+.++|.+.|++.++.+-.-+..++......++.. |+.
T Consensus 177 ~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 177 DTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 345667777777777665433355677777777663 77777777777776653111355666666666663 667
Q ss_pred chHHHHHHHHHhCCCC
Q 036577 159 SPGFVVLGRILRSCFT 174 (470)
Q Consensus 159 ~~a~~~~~~~~~~~~~ 174 (470)
+++.+.+++.++....
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 7777777777665433
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.84 E-value=0.13 Score=36.69 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=9.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 036577 327 NVIMDELCKNGKMDEASRLLDLMI 350 (470)
Q Consensus 327 ~~l~~~~~~~g~~~~a~~~~~~~~ 350 (470)
..+..++.+.|+++.|...++++.
T Consensus 50 ~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 50 DYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHH
Confidence 333333333333333333333333
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.63 E-value=0.081 Score=39.97 Aligned_cols=104 Identities=13% Similarity=0.093 Sum_probs=63.2
Q ss_pred CCCHhHHHHHHHHHHHcCCH------HHHHHHHHHHHHcCCCCCH-hHHHHHHHH---H---HcCCCHHHHHHHHHHHHH
Q 036577 320 QPNVVTFNVIMDELCKNGKM------DEASRLLDLMIQIGVRPNA-FVYNTLMDG---F---CLTGRVNRAKELFVSMES 386 (470)
Q Consensus 320 ~~~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~~-~~~~~l~~~---~---~~~g~~~~A~~~~~~~~~ 386 (470)
+-|..+|-..+....+.|+. ++..++|++.... ++|+. ..|...+.. | ...++.++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44667777777777777777 7777777777765 33332 122222221 1 234677777777777755
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 036577 387 NRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIK 425 (470)
Q Consensus 387 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 425 (470)
.+-.. ...|-...+.-.++|+++.|.+++.+.+..+.+
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 42222 666666666666777777777777777765544
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.39 E-value=0.37 Score=36.43 Aligned_cols=64 Identities=16% Similarity=0.127 Sum_probs=45.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036577 336 NGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILIN 401 (470)
Q Consensus 336 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 401 (470)
.++.++|.++|+.++..+-+ -...|......-.++|++..|.+++...+..+.. +.......+.
T Consensus 73 i~D~d~aR~vy~~a~~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~ 136 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALR 136 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHH
Confidence 47888888888888766333 3777777777778888888888888888887633 3444444443
No 234
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.69 E-value=4.3 Score=41.23 Aligned_cols=259 Identities=11% Similarity=0.070 Sum_probs=127.3
Q ss_pred HHHHHhcCCcchHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------CCCcchHHHHH
Q 036577 149 INCFCKMGRVSPGFVVLGRILRSC--FTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGC-------EPNVITYSTLI 219 (470)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~-------~~~~~~~~~l~ 219 (470)
.-+....|+.++++.+++..+..+ -.+....-..+.-+....|..+++..++.......- .+....-.++.
T Consensus 381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 344566777777777776655421 122233334444455555655566666665544210 01111223333
Q ss_pred HHHHhcCC-hHHHHHHHHHHHhcCCCCCcccCCCH--hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHH--
Q 036577 220 NGLCRTGH-TIVALNLFEEMANGNGEIGVVCEPNT--VTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSL-- 294 (470)
Q Consensus 220 ~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-- 294 (470)
-+++..|. -+++.+.+..+.... .+.. ..-..+...+.-.|+.+....++..+.+.. +..+...+
T Consensus 461 LGla~~GS~~eev~e~L~~~L~dd-------~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aal 530 (963)
T 4ady_A 461 IGLAAMGSANIEVYEALKEVLYND-------SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAV 530 (963)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHhcC-------CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHH
Confidence 33333332 235555555555433 1111 112233344455667666677776665532 22222223
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHH---HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcC
Q 036577 295 IHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFN---VIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLT 371 (470)
Q Consensus 295 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 371 (470)
.-++...|+.+.+..+++.+.... .|. .-|. ++..+|+..|+.....+++..+.... ..+..-...+.-++...
T Consensus 531 gLGll~~g~~e~~~~li~~L~~~~-dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~ 607 (963)
T 4ady_A 531 GLALINYGRQELADDLITKMLASD-ESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLL 607 (963)
T ss_dssp HHHHHTTTCGGGGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTS
T ss_pred HHHhhhCCChHHHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhcc
Confidence 333446677777777777766532 222 2222 23445667777766666777776542 22333333333344445
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh-hHHHHHHHHHHH
Q 036577 372 GRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEI-EGALSLYSEMLS 421 (470)
Q Consensus 372 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 421 (470)
|+.+.+.++++.+.+.+ .|.+..-..+.-+....|.. .+++..+..+..
T Consensus 608 g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 608 RDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp SSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 66666666665555443 34444334444444445543 466677777653
No 235
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.66 E-value=0.43 Score=35.25 Aligned_cols=67 Identities=12% Similarity=0.135 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHHHHcCCh---hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 390 MHDVFSYSILINGYCKNKEI---EGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 390 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
.|+..+--.+.+++.+..+. .+++.++++..+.+..-....+..|.-++.+.|++++|+++.+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34444444455555554432 23455555554432111223444445555555555555555555554
No 236
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.57 E-value=1 Score=33.68 Aligned_cols=67 Identities=9% Similarity=-0.044 Sum_probs=30.0
Q ss_pred CCHhHHHHHHHHHHcCCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 356 PNAFVYNTLMDGFCLTGR---VNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 356 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
|+..+--.+..++.+..+ ..+++.+++.+...+..-.....--+.-++.+.|++++|.+..+.+++.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 344444444444444443 2344455555444321112333333444555555555555555555543
No 237
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.50 E-value=3.8 Score=39.78 Aligned_cols=115 Identities=6% Similarity=-0.093 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhHH----HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 036577 338 KMDEASRLLDLMIQIGVRPNAFVY----NTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGAL 413 (470)
Q Consensus 338 ~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 413 (470)
+.+.|...+....+... .+.... ..++......+...++...+....... .+.......+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 67888888887765432 233222 222223334443455555555544432 33333444444455678888888
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 414 SLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 414 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
..|+.|..... ....-..-+..++...|+.++|..+|+.+.+
T Consensus 306 ~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888754211 1233344566777788888888888888764
No 238
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.34 E-value=2.1e-06 Score=77.80 Aligned_cols=210 Identities=12% Similarity=0.041 Sum_probs=122.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIK 185 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (470)
.+..|..|..+....++..+|++-|- + ..|+..|..++.+..+.|.+++-...+.-..+.. .+..+=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI---k---A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI---K---ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC---C---CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH---h---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 45578888888888888888877662 2 2355567888888888888888888777665542 23344457888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--------------cccCC
Q 036577 186 GLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIG--------------VVCEP 251 (470)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~ 251 (470)
+|++.++..+.++.+ . .||..-...+.+-|...|.++.|.-+|..+.+-.+-.. -.-..
T Consensus 125 ayAk~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHHTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHHhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888888766543322 2 26776777777777777777777666655533221000 00123
Q ss_pred CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 036577 252 NTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMD 331 (470)
Q Consensus 252 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 331 (470)
++.||--+..+|...+++.-|.-.--.+.-.. .-...++..|-..|.+++.+.+++...... .....+|+-|.-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvha-----deL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-----DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-----SCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcccH-----HHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHH
Confidence 45556666666666665555443332222210 011224445566666666666665554322 334555555555
Q ss_pred HHHHc
Q 036577 332 ELCKN 336 (470)
Q Consensus 332 ~~~~~ 336 (470)
.|++-
T Consensus 272 LYsKY 276 (624)
T 3lvg_A 272 LYSKF 276 (624)
T ss_dssp HHHSS
T ss_pred HHHhc
Confidence 55543
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.29 E-value=5.2 Score=40.60 Aligned_cols=305 Identities=12% Similarity=0.033 Sum_probs=153.6
Q ss_pred HHHHHHHHHHhcCCcchH-HHHH-HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCcchHHHHH
Q 036577 144 TYNILINCFCKMGRVSPG-FVVL-GRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFG--CEPNVITYSTLI 219 (470)
Q Consensus 144 ~~~~li~~~~~~g~~~~a-~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~l~ 219 (470)
+-..+.+++...|--.+. +... +.+-+. .+....-....-+....|+.++++.+++.....+ -.+....-..+.
T Consensus 341 ~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~--~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAlla 418 (963)
T 4ady_A 341 TAVSVANGFMHAGTTDNSFIKANLPWLGKA--QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYG 418 (963)
T ss_dssp HHHHHHHHHHTTTTCCCHHHHHCHHHHHHC--CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcchhhhcchhhhhcc--chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHH
Confidence 344566777777755443 2222 233332 2222233333445667788888888777765421 111222333444
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCC-CCcccCCCHhhHHHHHHHHHhCCC-HHHHHHHHHHHHhCCCCCCHHHHH--HHH
Q 036577 220 NGLCRTGHTIVALNLFEEMANGNGE-IGVVCEPNTVTYTTIIDGLCKEGF-VDKAKELFLKMKDENINPNVVTYN--SLI 295 (470)
Q Consensus 220 ~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~--~li 295 (470)
-+....|...++..++......... .+....+....-..+.-+..-.|. -+++.+.+..+....- +...... +|.
T Consensus 419 LGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALG 497 (963)
T 4ady_A 419 LGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMG 497 (963)
T ss_dssp HHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHh
Confidence 5566667666777777665543220 000001222223333333333332 2355555555554321 1111122 233
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHH--HHHHHHHHcCCC
Q 036577 296 HGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVY--NTLMDGFCLTGR 373 (470)
Q Consensus 296 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~ 373 (470)
..+.-.|+.+....++..+.+.. ..+..-...+.-++...|+.+.+..+++.+.... .|....- .++.-+|+..|+
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCC
T ss_pred hhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCC
Confidence 34556677777777777766542 1122223333344557788888888888877641 2222221 234556778888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCH-HHHHHHHH
Q 036577 374 VNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQV-ERAFKLFD 452 (470)
Q Consensus 374 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~ 452 (470)
.....+++..+.+.. ..++.....+.-++...|+.+.+.++++.+.+.+ .|...--..+.-+....|+. .++...+.
T Consensus 576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 877777888877642 2234434444445555777777777777665532 33333222233333333332 45666666
Q ss_pred HHH
Q 036577 453 EMR 455 (470)
Q Consensus 453 ~m~ 455 (470)
.+.
T Consensus 654 ~L~ 656 (963)
T 4ady_A 654 PLT 656 (963)
T ss_dssp HHH
T ss_pred HHc
Confidence 665
No 240
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.91 E-value=1.9e-05 Score=71.75 Aligned_cols=264 Identities=11% Similarity=0.085 Sum_probs=167.6
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 036577 141 DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLIN 220 (470)
Q Consensus 141 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 220 (470)
.+.+|..|..+..+.+++.+|++-|-+ ..|...|..++....+.|.+++-.+.+....+. ..+...-+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 345788899999898988888765532 235667888999999999999999988777654 345666678999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 036577 221 GLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCY 300 (470)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 300 (470)
+|++.++..+-.+++ ..||..-...+.+-|...|.++.|.-+|..+.. |.-|..++.+
T Consensus 125 ayAk~~rL~elEefl-------------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~ 182 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-------------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVH 182 (624)
T ss_dssp HHHTSCSSSTTTSTT-------------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSS
T ss_pred HHHhhCcHHHHHHHH-------------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHH
Confidence 999999866543321 256777778888899999999988888765543 3334455666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHH
Q 036577 301 ANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKEL 380 (470)
Q Consensus 301 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 380 (470)
.|++..|.+.-++ ..++.||-.+-.+|...+.+..|...--.++-. +| -...++..|-..|.+++.+.+
T Consensus 183 L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsL 251 (624)
T 3lvg_A 183 LGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITM 251 (624)
T ss_dssp CSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTT
T ss_pred HHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHH
Confidence 6776666543222 335667777777777777776665544444322 11 122455566777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCC------CCHhHHHHHHHHHHhcCCHHHH
Q 036577 381 FVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK-GIK------PDVVIYNTLFIGLFEIHQVERA 447 (470)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~------p~~~~~~~l~~~~~~~g~~~~A 447 (470)
++.-.... ......|+-|.-.|++- ++++..+.++..-.+ +++ -....|.-++-.|.+-.+++.|
T Consensus 252 lEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA 323 (624)
T 3lvg_A 252 LEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 323 (624)
T ss_dssp HHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHH
Confidence 76655332 33666777777777664 345554444432211 111 0233455555555555555544
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.69 E-value=0.33 Score=44.31 Aligned_cols=56 Identities=14% Similarity=0.147 Sum_probs=28.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 036577 363 TLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEM 419 (470)
Q Consensus 363 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (470)
.++..+...|+.+++...+..+.... +-+...|..+|.++.+.|+..+|++.|++.
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444445555555555555544432 235555555555555555555555555544
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.66 E-value=4.4 Score=37.55 Aligned_cols=94 Identities=14% Similarity=0.042 Sum_probs=49.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHC--CCCCC---HhHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCC--HhH
Q 036577 292 NSLIHGFCYANDWNEAKCLLIEMMDQ--GVQPN---VVTFNVIMDELCKNGKMDEASRLLDLMIQ----IGVRPN--AFV 360 (470)
Q Consensus 292 ~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~--~~~ 360 (470)
..|...|...|++.+|..++..+... +.... ...+...+..|...+++..|..++.++.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34555666666666666666665432 11111 23344455566666666666666666532 111111 223
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH
Q 036577 361 YNTLMDGFCLTGRVNRAKELFVSME 385 (470)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (470)
+...+..+...+++.+|...|.++.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4555556666666666666665553
No 243
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.64 E-value=0.52 Score=34.62 Aligned_cols=67 Identities=10% Similarity=0.022 Sum_probs=29.4
Q ss_pred CCHhhHHHHHHHHHhCCCHHH---HHHHHHHHHhCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 036577 251 PNTVTYTTIIDGLCKEGFVDK---AKELFLKMKDENIN-PNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ 317 (470)
Q Consensus 251 ~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (470)
++..+-..+..++.+..+... ++.+++.+...+.+ -.....-.+.-++.+.|+++.|.+.++.+++.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 444444455555555544333 55555554443210 01122223333444555555555555554444
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.70 E-value=0.68 Score=45.83 Aligned_cols=53 Identities=19% Similarity=0.056 Sum_probs=30.2
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 036577 366 DGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEM 419 (470)
Q Consensus 366 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (470)
+.+...|+++.|.++-++....- +-+-.+|..|..+|...|+++.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 33445566666666666655532 225566666666666666666666555543
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.67 E-value=0.68 Score=45.85 Aligned_cols=54 Identities=17% Similarity=0.074 Sum_probs=46.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036577 400 INGYCKNKEIEGALSLYSEMLSKGIKPD-VVIYNTLFIGLFEIHQVERAFKLFDEMR 455 (470)
Q Consensus 400 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (470)
.+.|...|+++-|+++-++.... .|+ -.+|..|..+|...|+++.|+-.++.+-
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 44566789999999999999865 454 6699999999999999999999998873
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.26 E-value=7.1 Score=36.18 Aligned_cols=195 Identities=11% Similarity=-0.016 Sum_probs=118.9
Q ss_pred cCChhHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hc
Q 036577 84 TITPNEAFCIFDYMLNM----RPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC----KM 155 (470)
Q Consensus 84 ~~~~~~A~~~f~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~----~~ 155 (470)
.++++.|++-+-.+.+. ...+........++..|...|+++...+.+..+.+..-. .......+++.+. ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcC
Confidence 35677787776555432 112245777888999999999999998888766544212 2233344444332 23
Q ss_pred CCcchHH--HHHHHHHh--CC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-----cchHHHHHHHH
Q 036577 156 GRVSPGF--VVLGRILR--SC-FTP---DAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPN-----VITYSTLINGL 222 (470)
Q Consensus 156 g~~~~a~--~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~-----~~~~~~l~~~~ 222 (470)
...+... .+.+.+.. .| +-. .......|...|...|++.+|.+++..+...-...+ ...+...+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3322211 11111110 11 111 223456788999999999999999999864311122 23456677889
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCcccCCC--HhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 036577 223 CRTGHTIVALNLFEEMANGNGEIGVVCEPN--TVTYTTIIDGLCKEGFVDKAKELFLKMKD 281 (470)
Q Consensus 223 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 281 (470)
...+++..|..++.++........ .+|+ ...+...+..+...+++.+|.+.|.++..
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~--~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNP--KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSS--CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccC--CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999999999998743110000 1222 24566777788889999999888877754
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.57 E-value=1 Score=41.07 Aligned_cols=69 Identities=6% Similarity=0.012 Sum_probs=46.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHhHH
Q 036577 292 NSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQ-----IGVRPNAFVY 361 (470)
Q Consensus 292 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~ 361 (470)
..++..+...|+++++...+..+.... +.+...+..+|.++.+.|+..+|.+.|+...+ .|+.|...+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 345566667777777777777766553 55666777777777777777777777776543 3666666543
No 248
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=90.67 E-value=7.1 Score=35.32 Aligned_cols=166 Identities=11% Similarity=-0.015 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHCCCCCCHhHH--
Q 036577 254 VTYTTIIDGLCKEGFVDKAKELFLKMKDE-NINP---NVVTYNSLIHGFCYA-NDWNEAKCLLIEMMDQGVQPNVVTF-- 326 (470)
Q Consensus 254 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~-- 326 (470)
.....|...|.+.|+.++..+++...... +..+ .......++..+... +..+.-.++..+..+..- ..-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 35667888889999999888888776542 1111 233455677777654 334444444444443210 011122
Q ss_pred ----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-----HhHHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCCCHHH
Q 036577 327 ----NVIMDELCKNGKMDEASRLLDLMIQIGVRPN-----AFVYNTLMDGFCLTGRVNRAKELFVSMESN--RCMHDVFS 395 (470)
Q Consensus 327 ----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 395 (470)
..++..|...|++.+|..++..+.+.-...| ..++..-+..|...+++.++...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 2577888899999999888888876422222 334556677788889999998888776432 11122222
Q ss_pred H----HHHHHHHH-HcCChhHHHHHHHHHH
Q 036577 396 Y----SILINGYC-KNKEIEGALSLYSEML 420 (470)
Q Consensus 396 ~----~~l~~~~~-~~g~~~~A~~~~~~~~ 420 (470)
- ..-+..+. ..+++.+|...|-+..
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 1 12223345 6788888887776654
No 249
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.74 E-value=2.8 Score=32.33 Aligned_cols=57 Identities=11% Similarity=0.093 Sum_probs=27.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcC-CCCCc-------chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036577 184 IKGLCAESRIMEAAALFTKLKAFG-CEPNV-------ITYSTLINGLCRTGHTIVALNLFEEMAN 240 (470)
Q Consensus 184 ~~~~~~~g~~~~a~~~~~~~~~~g-~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 240 (470)
++.+...|.++.|+-+.+.+.... ..++. .++..+.+++...|++..|...|++..+
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 444455555555555555433221 11221 1334455556666666666666666433
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.57 E-value=10 Score=40.09 Aligned_cols=146 Identities=10% Similarity=0.059 Sum_probs=93.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHc----C----------------
Q 036577 294 LIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQI----G---------------- 353 (470)
Q Consensus 294 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~---------------- 353 (470)
++..+...+.++.+.++..-. +.+...--.+..+|...|++++|...|.+.... +
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 444455556665555443221 334444455667888899999999998764211 0
Q ss_pred --CCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 036577 354 --VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHD----VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD 427 (470)
Q Consensus 354 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 427 (470)
...-..-|..++..+.+.|.++.+.++-+..++.....+ ...|..+..++...|++++|...+-.+-+...+
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r-- 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK-- 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--
Confidence 001123467778888888999988888777665422222 225788899999999999999988877665433
Q ss_pred HhHHHHHHHHHHhcCCHHH
Q 036577 428 VVIYNTLFIGLFEIHQVER 446 (470)
Q Consensus 428 ~~~~~~l~~~~~~~g~~~~ 446 (470)
......|+..++..|..+.
T Consensus 971 ~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHhCCChhh
Confidence 4566677777776665544
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.20 E-value=3.5 Score=31.82 Aligned_cols=25 Identities=16% Similarity=0.068 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHH
Q 036577 394 FSYSILINGYCKNKEIEGALSLYSE 418 (470)
Q Consensus 394 ~~~~~l~~~~~~~g~~~~A~~~~~~ 418 (470)
..---+..||.+.|++++|+.+++.
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 3334466677777777777777654
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.97 E-value=9.8 Score=40.24 Aligned_cols=148 Identities=8% Similarity=0.010 Sum_probs=100.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----C---------------
Q 036577 258 TIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ----G--------------- 318 (470)
Q Consensus 258 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~--------------- 318 (470)
.++..+.+.+.++.+.++..... .+...--.+..+|...|++++|...|.+.... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 34555666677776666554332 24455556778899999999999999764210 0
Q ss_pred ---CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----hHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 036577 319 ---VQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNA----FVYNTLMDGFCLTGRVNRAKELFVSMESNRCMH 391 (470)
Q Consensus 319 ---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 391 (470)
...-..-|..++..+.+.+.++.+.++-...++....-+. ..|..+.+.+...|++++|...+-.+.... -
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~ 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--L 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--S
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--H
Confidence 0011234677888899999999999998888765332222 257888999999999999999988776653 2
Q ss_pred CHHHHHHHHHHHHHcCChhHH
Q 036577 392 DVFSYSILINGYCKNKEIEGA 412 (470)
Q Consensus 392 ~~~~~~~l~~~~~~~g~~~~A 412 (470)
-......++..++..|..+.-
T Consensus 970 r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhh
Confidence 456677777777766655443
No 253
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.72 E-value=12 Score=31.64 Aligned_cols=53 Identities=8% Similarity=0.050 Sum_probs=40.2
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036577 82 ITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNST 136 (470)
Q Consensus 82 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 136 (470)
++.|++++|+.....-++..|. |...-..++..++-.|++++|..-++-..+.
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~--da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPK--DASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 4567788888888777777776 7777777888888888888887777776654
No 254
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.02 E-value=15 Score=32.01 Aligned_cols=81 Identities=14% Similarity=0.144 Sum_probs=47.1
Q ss_pred CCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHCCCCCCHhHHH
Q 036577 251 PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYA---NDWNEAKCLLIEMMDQGVQPNVVTFN 327 (470)
Q Consensus 251 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~ 327 (470)
-++.....+...|.+.|++.+|...|- .|-..+...+..++.-+... |...++ +... .
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~-~ 192 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM----LGTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFF-S 192 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHH-H
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH----hCCCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHH-H
Confidence 467888889999999999999888773 11111344444444333332 322221 1111 1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 036577 328 VIMDELCKNGKMDEASRLLDLMI 350 (470)
Q Consensus 328 ~l~~~~~~~g~~~~a~~~~~~~~ 350 (470)
..+--|.-.|+...|..+++...
T Consensus 193 RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 193 RLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH
Confidence 22334556788888888887664
No 255
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.35 E-value=8.6 Score=35.43 Aligned_cols=99 Identities=7% Similarity=-0.066 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCcchHHH---
Q 036577 144 TYNILINCFCKMGRVSPGFVVLGRILRS--CFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGC-EPNVITYST--- 217 (470)
Q Consensus 144 ~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~--- 217 (470)
+...+...|.+.|+++.|.+.+.++... +...-...+-.+++.+...+++..+...++++...-. .++....+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 6677888899999999999999988763 3334466788888999999999999999888754311 122221111
Q ss_pred -HHHHHHhcCChHHHHHHHHHHHhcC
Q 036577 218 -LINGLCRTGHTIVALNLFEEMANGN 242 (470)
Q Consensus 218 -l~~~~~~~g~~~~a~~~~~~~~~~~ 242 (470)
-+..+...+++.+|-+.|-+.....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC
Confidence 1222345788999888888876554
No 256
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.23 E-value=6.6 Score=27.30 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036577 271 KAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMM 315 (470)
Q Consensus 271 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 315 (470)
+..+-++.+...++.|++.+..+.+++|.+.+|+..|.++|+-.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444443
No 257
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.19 E-value=6.7 Score=27.29 Aligned_cols=65 Identities=12% Similarity=0.210 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 036577 303 DWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGF 368 (470)
Q Consensus 303 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 368 (470)
|.-+..+-++.+....+.|++....+.+.+|.+.+++..|.++++-+..+- .....+|..+++-.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lqEl 89 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQEL 89 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHHHH
Confidence 455677777777778888899999999999999999999999998887653 22345676666543
No 258
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=84.92 E-value=9.8 Score=28.08 Aligned_cols=68 Identities=9% Similarity=-0.044 Sum_probs=36.1
Q ss_pred CCCHhHHHHHHHHHHcCCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 355 RPNAFVYNTLMDGFCLTGR---VNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 355 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
.|+..+--.+..++.+..+ ..+++.+++.+.+.+..-....+--+.-++.+.|++++|.+..+.+++.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3444444445555555543 3345566665555431113444455555666666666666666666643
No 259
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.66 E-value=19 Score=31.26 Aligned_cols=167 Identities=15% Similarity=0.107 Sum_probs=89.0
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHH----HHHHHHCCCCCCHhHHHHHH
Q 036577 255 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCL----LIEMMDQGVQPNVVTFNVIM 330 (470)
Q Consensus 255 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~ 330 (470)
.|.++..=|.+.+++++|++++..-.. .+.+.|++..|.++ ++-..+.+.+++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 344444556667777777777644322 23445555554443 34444556677776666666
Q ss_pred HHHHHcCCHH-HHHHHHHHHH----HcC--CCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036577 331 DELCKNGKMD-EASRLLDLMI----QIG--VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGY 403 (470)
Q Consensus 331 ~~~~~~g~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (470)
..+......+ .=.++++.++ +.| ..-++.....+...|.+.|++.+|+..|- .+...+...+..++.-+
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~w 175 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM----LGTHDSMIKYVDLLWDW 175 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH----TSCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH----hCCCccHHHHHHHHHHH
Confidence 6655432211 1123333333 222 22366778888888888899888887763 11111344555554444
Q ss_pred HHc---CChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036577 404 CKN---KEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMR 455 (470)
Q Consensus 404 ~~~---g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (470)
... |...++--++-+ .+--|.-.|+...|..+++...
T Consensus 176 ~~~~~~~~~~e~dlf~~R---------------aVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 176 LCQVDDIEDSTVAEFFSR---------------LVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHTTCCCHHHHHHHHHH---------------HHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHhcCCCCcchHHHHHHH---------------HHHHHHHhcCHHHHHHHHHHHH
Confidence 443 433332211111 1223445678888888877765
No 260
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=83.14 E-value=23 Score=31.03 Aligned_cols=168 Identities=11% Similarity=0.059 Sum_probs=92.8
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHH----HHHHHCCCCCCHhHHHHHH
Q 036577 255 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLL----IEMMDQGVQPNVVTFNVIM 330 (470)
Q Consensus 255 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l~ 330 (470)
.|.++..=|.+.+++++|++++..-. ..+.+.|+...|.++- +-..+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34444555677888888888764432 1234445554444443 3344556677776666666
Q ss_pred HHHHHcCCHH-HHHHHHHHHH----HcC--CCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036577 331 DELCKNGKMD-EASRLLDLMI----QIG--VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGY 403 (470)
Q Consensus 331 ~~~~~~g~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (470)
..+.....-+ .=..+.++++ +.| ..-|+.....+...|.+.+++.+|+..|- . +..+....+..++.-+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHH
Confidence 6665544311 1122333332 222 23466777888899999999999988772 2 2223335665555554
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 404 CKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
...+...++--+ . ...+--|.-.|+...|..+++.+.+
T Consensus 178 ~~~~~~~e~dlf--------------i-aRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 178 YKQDESHTAPLY--------------C-ARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTSCGGGHHHH--------------H-HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCccHHHH--------------H-HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444432222111 1 1123345566788888887766653
No 261
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.76 E-value=12 Score=27.58 Aligned_cols=59 Identities=12% Similarity=0.200 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 036577 271 KAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIM 330 (470)
Q Consensus 271 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 330 (470)
+..+-++.+...++.|++.+..+.+.+|-+.+|+..|.++|+-.+.+- .+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 455666666666777777777777777777777777777777766543 22233455444
No 262
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=81.39 E-value=14 Score=27.29 Aligned_cols=47 Identities=11% Similarity=0.176 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036577 306 EAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQI 352 (470)
Q Consensus 306 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 352 (470)
+..+-++.+...++.|++....+.+.+|.+.+++..|.++++-++.+
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 44444555555555666666666666666666666666666665544
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.98 E-value=12 Score=34.49 Aligned_cols=99 Identities=13% Similarity=-0.016 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC---CCCCCHhH--H
Q 036577 254 VTYTTIIDGLCKEGFVDKAKELFLKMKDE--NINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ---GVQPNVVT--F 326 (470)
Q Consensus 254 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~ 326 (470)
.+...+...|.+.|++++|.+.|.++... +...-...+-.+++.+...+++..+...+.++... +..++... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 46778999999999999999999999874 33345667888899999999999999999887542 22232211 1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036577 327 NVIMDELCKNGKMDEASRLLDLMIQI 352 (470)
Q Consensus 327 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 352 (470)
..-+..+...+++..|...|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11122344578899998888776654
No 264
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=80.85 E-value=29 Score=30.49 Aligned_cols=139 Identities=17% Similarity=0.161 Sum_probs=85.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHH----HHHHHHHcCCCCCHhHHHHHH
Q 036577 290 TYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASR----LLDLMIQIGVRPNAFVYNTLM 365 (470)
Q Consensus 290 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~----~~~~~~~~~~~~~~~~~~~l~ 365 (470)
+|.++..-|.+.+++++|++++..-. ..+.+.|+...|.+ +++-..+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34455566888999999999875432 22334455444333 345555567778887777777
Q ss_pred HHHHcCCCHH-HHHHHHHHHHH----CCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 036577 366 DGFCLTGRVN-RAKELFVSMES----NRC--MHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGL 438 (470)
Q Consensus 366 ~~~~~~g~~~-~A~~~~~~~~~----~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 438 (470)
..+.....-+ .=..+.+++++ .+. .-+......+...|.+.+++.+|...|- . |-.+....+..++.-+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHH
Confidence 7776655321 11233333332 221 1277888889999999999999998872 2 4454556776666666
Q ss_pred HhcCCHHHH
Q 036577 439 FEIHQVERA 447 (470)
Q Consensus 439 ~~~g~~~~A 447 (470)
...+...++
T Consensus 178 ~~~~~~~e~ 186 (336)
T 3lpz_A 178 YKQDESHTA 186 (336)
T ss_dssp HHTSCGGGH
T ss_pred HHhcCCccH
Confidence 665544443
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=78.50 E-value=9.8 Score=32.09 Aligned_cols=115 Identities=11% Similarity=0.039 Sum_probs=72.8
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhc
Q 036577 115 GCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDA----VTFNSLIKGLCAE 190 (470)
Q Consensus 115 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~ 190 (470)
..+.+.|++++|++....-++.. +.|...-..+++.+|-.|++++|.+-++...+. .|+. ..|..+|++
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHH----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHH----
Confidence 34567889999999888887775 778888888899999999999998888887765 3332 234434332
Q ss_pred CCHHHHHHHHHHHHhcCCCCC----cchH-HHHHHHH--HhcCChHHHHHHHHHHHhcC
Q 036577 191 SRIMEAAALFTKLKAFGCEPN----VITY-STLINGL--CRTGHTIVALNLFEEMANGN 242 (470)
Q Consensus 191 g~~~~a~~~~~~~~~~g~~~~----~~~~-~~l~~~~--~~~g~~~~a~~~~~~~~~~~ 242 (470)
+..=.+....+-.|. ...| ..++.+. ...|+.++|..+-.++.+..
T Consensus 78 ------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~a 130 (273)
T 1zbp_A 78 ------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 130 (273)
T ss_dssp ------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred ------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Confidence 222222332222221 1223 3344443 34688888888888876654
No 266
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=77.53 E-value=13 Score=25.76 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=26.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 036577 186 GLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242 (470)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 242 (470)
.+...|++++|..+.+.+. -||...|..+... +.|-.+++...+.++...+
T Consensus 49 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTCC
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC
Confidence 3445666666665554443 3555555554433 4555555555555554444
No 267
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=76.47 E-value=22 Score=26.65 Aligned_cols=68 Identities=12% Similarity=0.003 Sum_probs=36.4
Q ss_pred CCCHhHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 036577 320 QPNVVTFNVIMDELCKNGKM---DEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESN 387 (470)
Q Consensus 320 ~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (470)
.|+..+--....++.+..+. .+++.+++.+.+.+..-.....-.|.-++.+.|++++|+++.+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 34554444455555555443 345666666665433222233334555666666666666666666664
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=75.79 E-value=22 Score=28.48 Aligned_cols=83 Identities=11% Similarity=0.038 Sum_probs=58.2
Q ss_pred HHHHHHHHc-----CCCCCHhH---HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCChhHHHH
Q 036577 344 RLLDLMIQI-----GVRPNAFV---YNTLMDGFCLTGRVNRAKELFVSMESNRCMH-DVFSYSILINGYCKNKEIEGALS 414 (470)
Q Consensus 344 ~~~~~~~~~-----~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 414 (470)
.++++..+. ..+-|..- |...++.+ .+++...+.++|..|...++-- -...|......+...|++++|.+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 566665543 22334433 33333333 2455789999999998876544 56778888888999999999999
Q ss_pred HHHHHHHCCCCCC
Q 036577 415 LYSEMLSKGIKPD 427 (470)
Q Consensus 415 ~~~~~~~~~~~p~ 427 (470)
+|+.-++.+-.|-
T Consensus 137 Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 137 LLELGAENNCRPY 149 (202)
T ss_dssp HHHHHHHTTCBSH
T ss_pred HHHHHHHcCCccH
Confidence 9999998877774
No 269
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=74.82 E-value=12 Score=25.83 Aligned_cols=51 Identities=16% Similarity=0.112 Sum_probs=27.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 036577 186 GLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242 (470)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 242 (470)
.+...|++++|..+.+.+. -||...|..+... +.|-.+++...+.++...+
T Consensus 48 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNP----WPALEPWFALCEW--HLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHH--HTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC
Confidence 3455666666665544433 3555555554433 5566566665555555544
No 270
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=67.56 E-value=28 Score=24.12 Aligned_cols=78 Identities=9% Similarity=-0.035 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 036577 337 GKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLY 416 (470)
Q Consensus 337 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 416 (470)
...++|..+-+.+...+. ...+-..-+..+...|++++|..+.+ ..+.||...|-++. -.+.|-.+++...+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~----~~c~pdlepw~ALc--e~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAH----GNPWPALEPWFALC--EWHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGT----TCCCGGGHHHHHHH--HHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcC----CCCCchHHHHHHHH--HHhcccHHHHHHHH
Confidence 345666666666555432 11111122233455666666655432 22355666555442 34566666666555
Q ss_pred HHHHHC
Q 036577 417 SEMLSK 422 (470)
Q Consensus 417 ~~~~~~ 422 (470)
.++..+
T Consensus 92 ~~la~s 97 (115)
T 2uwj_G 92 AGLGGS 97 (115)
T ss_dssp HHHHTC
T ss_pred HHHHhC
Confidence 555444
No 271
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=67.14 E-value=29 Score=24.11 Aligned_cols=76 Identities=12% Similarity=-0.021 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 036577 338 KMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYS 417 (470)
Q Consensus 338 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 417 (470)
..++|..+-+.+...+. ...+-..-+..+...|++++|..+.+. .+.||...|-++. -.+.|-.+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~----~c~pdlepw~ALc--e~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNK----LAYPDLEPWLALC--EYRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTT----SCCGGGHHHHHHH--HHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCC----CCCchHHHHHHHH--HHhcccHHHHHHHHH
Confidence 45566665555555432 111111122334455666666554422 2345555555442 345555555555554
Q ss_pred HHHH
Q 036577 418 EMLS 421 (470)
Q Consensus 418 ~~~~ 421 (470)
++..
T Consensus 94 ~la~ 97 (116)
T 2p58_C 94 RLAR 97 (116)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 5543
No 272
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=64.41 E-value=21 Score=27.09 Aligned_cols=54 Identities=17% Similarity=0.178 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCH
Q 036577 124 DTVLSLFKRLNSTGLFP-DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDA 177 (470)
Q Consensus 124 ~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 177 (470)
+++.++|..|...|+-- -...|......+-..|++.+|.++|+.-++.+-.|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 34788888888776543 3456777777788888888888888888887766644
No 273
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=64.30 E-value=31 Score=26.55 Aligned_cols=54 Identities=9% Similarity=0.097 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHh
Q 036577 376 RAKELFVSMESNRCMH-DVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVV 429 (470)
Q Consensus 376 ~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 429 (470)
.+.++|..|...++-. -...|......+...|++.+|.++|+.-++.+-.|-..
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 3667888888876544 56667788888888899999999999888887777544
No 274
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=60.47 E-value=64 Score=25.81 Aligned_cols=96 Identities=10% Similarity=0.086 Sum_probs=64.4
Q ss_pred HHHHccCC--HHHHH-HHHHHHHHC-----CCCCCHhHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCC-CHhHHHHH
Q 036577 296 HGFCYAND--WNEAK-CLLIEMMDQ-----GVQPNVVTFNVIMDELCK--NGKMDEASRLLDLMIQIGVRP-NAFVYNTL 364 (470)
Q Consensus 296 ~~~~~~~~--~~~a~-~~~~~~~~~-----~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l 364 (470)
..|-..+. -..-. .++++..+. ...-|..-...-+..--. .+...++..+|..|...|+-- -...|...
T Consensus 42 e~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~w 121 (202)
T 3esl_A 42 TSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEF 121 (202)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHH
T ss_pred HhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 44444444 22234 567766552 234455433333332222 455779999999999987653 45678888
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 036577 365 MDGFCLTGRVNRAKELFVSMESNRCMH 391 (470)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~~~~~~ 391 (470)
...+...|++.+|.++|+.-++.+-.|
T Consensus 122 A~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 122 SKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 888999999999999999999988777
No 275
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=60.07 E-value=28 Score=26.81 Aligned_cols=56 Identities=9% Similarity=0.029 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHH
Q 036577 124 DTVLSLFKRLNSTGLFP-DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVT 179 (470)
Q Consensus 124 ~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 179 (470)
+.+.++|..|...|+-- -...|......+-..|++.+|.++|..-++.+-.|-...
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERL 133 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 34777888888886653 345677777888888999999999998888877776443
No 276
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=58.68 E-value=94 Score=27.57 Aligned_cols=65 Identities=12% Similarity=0.242 Sum_probs=39.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCC
Q 036577 396 YSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQ--VERAFKLFDEMRRDGVAA 461 (470)
Q Consensus 396 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~g~~p 461 (470)
...++.=|...|+.++|.+.++++..-.+. .......+..++-+.++ .+...+++..+...|+-.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 466777788888888888888887421111 12234445555555433 345677777777666543
No 277
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.87 E-value=98 Score=29.07 Aligned_cols=63 Identities=13% Similarity=0.075 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc------hH-HHHHHHHHhcCChHHHHHHHHHHHhcC
Q 036577 177 AVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVI------TY-STLINGLCRTGHTIVALNLFEEMANGN 242 (470)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~------~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~ 242 (470)
...+|.+++.|...+.++.|..+..+..- +.+.. .| ..+...+.-.+++.+|.+.+.......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~f---P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEY---PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCS---CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcC---CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 56789999999999999999999998752 21211 12 234566777899999999999987654
No 278
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=52.92 E-value=35 Score=28.54 Aligned_cols=13 Identities=15% Similarity=0.340 Sum_probs=6.5
Q ss_pred HHHHHHcCCCCCh
Q 036577 451 FDEMRRDGVAADT 463 (470)
Q Consensus 451 ~~~m~~~g~~p~~ 463 (470)
.+.+.+.|..|+.
T Consensus 269 ~~~Ll~~Ga~~~~ 281 (285)
T 1wdy_A 269 AELLCKRGASTDC 281 (285)
T ss_dssp HHHHHHHSSCSCC
T ss_pred HHHHHHcCCCCCc
Confidence 3344455655553
No 279
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=51.92 E-value=84 Score=25.91 Aligned_cols=24 Identities=4% Similarity=0.065 Sum_probs=18.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 036577 112 ILFGCLAKNKHYDTVLSLFKRLNS 135 (470)
Q Consensus 112 ~l~~~~~~~~~~~~A~~~~~~m~~ 135 (470)
--++.+....+|++|++++++..+
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 345677788999999998887654
No 280
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=50.84 E-value=77 Score=24.62 Aligned_cols=27 Identities=7% Similarity=-0.297 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036577 429 VIYNTLFIGLFEIHQVERAFKLFDEMR 455 (470)
Q Consensus 429 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (470)
..++.+...|...|+.++|+..+.+--
T Consensus 115 fFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 115 FFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 355666778888999999998886543
No 281
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=50.16 E-value=37 Score=27.64 Aligned_cols=53 Identities=17% Similarity=0.140 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 036577 375 NRAKELFVSMESNRCMH-DVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD 427 (470)
Q Consensus 375 ~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 427 (470)
+.+..+|..|...++-- -...|......+...|++.+|.++|+.-++.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 56778888888877544 566778888888889999999999998888766663
No 282
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=49.63 E-value=36 Score=27.71 Aligned_cols=54 Identities=20% Similarity=0.096 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCH
Q 036577 124 DTVLSLFKRLNSTGLFP-DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDA 177 (470)
Q Consensus 124 ~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 177 (470)
+.+.++|..|...|+-- -...|......+-..|++.+|.++|+.-++.+-.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 57889999999887654 4557788888899999999999999999988767754
No 283
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=48.35 E-value=1.5e+02 Score=26.62 Aligned_cols=27 Identities=15% Similarity=-0.033 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036577 178 VTFNSLIKGLCAESRIMEAAALFTKLK 204 (470)
Q Consensus 178 ~~~~~l~~~~~~~g~~~~a~~~~~~~~ 204 (470)
.....|...|.+.|+.++..+++....
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455667778888888888777777654
No 284
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=47.49 E-value=93 Score=25.04 Aligned_cols=14 Identities=14% Similarity=0.356 Sum_probs=6.1
Q ss_pred HhcCChHHHHHHHH
Q 036577 223 CRTGHTIVALNLFE 236 (470)
Q Consensus 223 ~~~g~~~~a~~~~~ 236 (470)
+..|+.+-+..+++
T Consensus 87 ~~~~~~~~~~~Ll~ 100 (241)
T 1k1a_A 87 CEHRSPTCLRALLD 100 (241)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 34555444443333
No 285
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=47.41 E-value=28 Score=29.21 Aligned_cols=45 Identities=11% Similarity=0.055 Sum_probs=19.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc-hHH--HHHHHHHhcCChHHH
Q 036577 183 LIKGLCAESRIMEAAALFTKLKAFGCEPNVI-TYS--TLINGLCRTGHTIVA 231 (470)
Q Consensus 183 l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~-~~~--~l~~~~~~~g~~~~a 231 (470)
.+...++.|+.+.+.. +.+.|..++.. ... +.+...+..|+.+-+
T Consensus 8 ~L~~A~~~g~~~~v~~----Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v 55 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQ----LLEGGANVNFQEEEGGWTPLHNAVQMSREDIV 55 (285)
T ss_dssp HHHHHHHTTCHHHHHH----HHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred HHHHHHHcCCHHHHHH----HHHcCCCcccccCCCCCcHHHHHHHcCCHHHH
Confidence 3444455566543333 33344444433 122 234444555554433
No 286
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=45.68 E-value=1.3e+02 Score=25.99 Aligned_cols=105 Identities=13% Similarity=0.034 Sum_probs=48.8
Q ss_pred HHHHHHHHcCCCCCHhH--HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCChhHHHHHHHH
Q 036577 344 RLLDLMIQIGVRPNAFV--YNTLMDGFCLTGRVNRAKELFVSMESNRCMH---DVFSYSILINGYCKNKEIEGALSLYSE 418 (470)
Q Consensus 344 ~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~ 418 (470)
.+.+.+.+.|..++... -.+.+...+..|..+.+..+++. .+..+ |..-++.|. .-++.|+.+ +.+.
T Consensus 220 ~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~-~A~~~g~~~----iv~~ 291 (337)
T 4g8k_A 220 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALL-LAVELKLKK----IAEL 291 (337)
T ss_dssp HHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHH-HHHHTTCHH----HHHH
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHH-HHHHcCCHH----HHHH
Confidence 34444556655443221 11233344556776665544421 12211 111122232 234556543 4445
Q ss_pred HHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 036577 419 MLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADT 463 (470)
Q Consensus 419 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 463 (470)
+++.|..++..+ .+....+.|+.+ +.+.+++.|-.||.
T Consensus 292 Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 292 LCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred HHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 566777776553 233344566654 45556777766664
No 287
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=44.15 E-value=1.2e+02 Score=24.30 Aligned_cols=70 Identities=13% Similarity=0.040 Sum_probs=41.2
Q ss_pred hHHHHHHHHHh---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-----HHHHHHHHHHHHHCCCCCCHh
Q 036577 255 TYTTIIDGLCK---EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYAND-----WNEAKCLLIEMMDQGVQPNVV 324 (470)
Q Consensus 255 ~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~ 324 (470)
.+..+|+++.| -.+.+.|+-++-+|.+.|-.|.-..-..++-+.-..|. ...|...++.....|.+-...
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i 111 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLF 111 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 33444555543 46777888888888777766666666666666655553 334555555555556443333
No 288
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=43.78 E-value=1.2e+02 Score=24.12 Aligned_cols=56 Identities=9% Similarity=0.089 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-----HHHHHHHHHHHHHCCCCCC
Q 036577 266 EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYAND-----WNEAKCLLIEMMDQGVQPN 322 (470)
Q Consensus 266 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-----~~~a~~~~~~~~~~~~~~~ 322 (470)
-.+.+.|+-++-+|.+.| .|.-..-..++-+....|. ...|...++.....|.+-.
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~ 87 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEA 87 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 456677777777777766 5555555555555555443 2234444444445554333
No 289
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=43.69 E-value=59 Score=26.29 Aligned_cols=86 Identities=14% Similarity=0.088 Sum_probs=45.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHH--HHHHHHHHHh
Q 036577 114 FGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT--YNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVT--FNSLIKGLCA 189 (470)
Q Consensus 114 ~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~ 189 (470)
+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+ +++.+++.|..++... ....+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 3445667888877777776666554433211 112334445566653 4555555654443211 1223444556
Q ss_pred cCCHHHHHHHHHHH
Q 036577 190 ESRIMEAAALFTKL 203 (470)
Q Consensus 190 ~g~~~~a~~~~~~~ 203 (470)
.|+.+-+..+++..
T Consensus 89 ~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 89 HRSPTCLRALLDSA 102 (241)
T ss_dssp TTCHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHcC
Confidence 77777666555543
No 290
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=43.26 E-value=95 Score=26.18 Aligned_cols=14 Identities=7% Similarity=0.280 Sum_probs=6.3
Q ss_pred HHHHHHHcCCCCCH
Q 036577 345 LLDLMIQIGVRPNA 358 (470)
Q Consensus 345 ~~~~~~~~~~~~~~ 358 (470)
+.+.+.+.|..++.
T Consensus 210 ~v~~Ll~~gad~~~ 223 (285)
T 3kea_A 210 MLQALFKYDINIYS 223 (285)
T ss_dssp HHHHHTTSCBCSTT
T ss_pred HHHHHHHcCCCCCC
Confidence 33444444554443
No 291
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=42.90 E-value=2.4e+02 Score=27.27 Aligned_cols=229 Identities=11% Similarity=0.037 Sum_probs=115.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchH--HHHHHHHHhCCCCCCHHHHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPG--FVVLGRILRSCFTPDAVTFNSL 183 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a--~~~~~~~~~~~~~~~~~~~~~l 183 (470)
+...-.....+....|+-.+|....+.+-..| ......+..++..+.+.|.+... .+=++.+...| +...-..+
T Consensus 101 ~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~---~~~~a~~l 176 (618)
T 1qsa_A 101 TTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAG---NTGLVTVL 176 (618)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 55555556666777788777777777776665 34455677777777766655442 22223333332 11111111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc---------CCCCCcch---HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCC
Q 036577 184 IKGLCAESRIMEAAALFTKLKAF---------GCEPNVIT---YSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEP 251 (470)
Q Consensus 184 ~~~~~~~g~~~~a~~~~~~~~~~---------g~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 251 (470)
+..+ . .+.....+.+..+... .+.++... +...+.-+.+ .+.+.|...+....... ..
T Consensus 177 ~~~l-~-~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-------~~ 246 (618)
T 1qsa_A 177 AGQM-P-ADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-------QL 246 (618)
T ss_dssp HHTC-C-GGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-------TC
T ss_pred HHhC-C-HHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-------CC
Confidence 1111 0 0000000011111110 00111111 1111222333 37788888888876544 12
Q ss_pred CHhhHHH----HHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHH
Q 036577 252 NTVTYTT----IIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFN 327 (470)
Q Consensus 252 ~~~~~~~----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 327 (470)
+...... +.......+...++...+....... .+.....-.+....+.|+++.|...|..|.... .....-..
T Consensus 247 ~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~-~~~~r~~Y 323 (618)
T 1qsa_A 247 NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRY 323 (618)
T ss_dssp CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccc-cccHhHHH
Confidence 2222222 2222333443456666666655432 333334444455567799999999998875532 12333344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 036577 328 VIMDELCKNGKMDEASRLLDLMIQ 351 (470)
Q Consensus 328 ~l~~~~~~~g~~~~a~~~~~~~~~ 351 (470)
-+..++...|+.++|..+|..+.+
T Consensus 324 W~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 324 WQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhc
Confidence 566677888999999988888764
No 292
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.17 E-value=2.2e+02 Score=26.70 Aligned_cols=65 Identities=11% Similarity=0.044 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHH--H-HHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036577 107 VSSFNILFGCLAKNKHYDTVLSLFKRLNSTG-LFPDLY--T-YNILINCFCKMGRVSPGFVVLGRILRS 171 (470)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~--~-~~~li~~~~~~g~~~~a~~~~~~~~~~ 171 (470)
...+|.+++.|...+.++.|..+..+..--. ..++.. . +-.+...+.-.+++.+|.+.+....+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4557777777777777777777777653110 011111 1 223445566667777777777766654
No 293
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=41.93 E-value=1.3e+02 Score=23.77 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=6.9
Q ss_pred CHHHHHHHHHHHHhcCC
Q 036577 141 DLYTYNILINCFCKMGR 157 (470)
Q Consensus 141 ~~~~~~~li~~~~~~g~ 157 (470)
+...-...+..+.+.|.
T Consensus 32 ~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 33333344444444443
No 294
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=41.81 E-value=1.3e+02 Score=23.89 Aligned_cols=37 Identities=14% Similarity=-0.006 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 036577 266 EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYAN 302 (470)
Q Consensus 266 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 302 (470)
-.+.+.|+-++-+|++.|-.|....-..++-+.-..|
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 4677777777777777776666555555555555444
No 295
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=41.52 E-value=19 Score=29.98 Aligned_cols=118 Identities=11% Similarity=-0.056 Sum_probs=59.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHH--hcCCcchHHHHHHHHHhCC---------CC-
Q 036577 114 FGCLAKNKHYDTVLSLFKRLNSTGLFPDLY-------TYNILINCFC--KMGRVSPGFVVLGRILRSC---------FT- 174 (470)
Q Consensus 114 ~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~-------~~~~li~~~~--~~g~~~~a~~~~~~~~~~~---------~~- 174 (470)
+...++.|+.+....+++.+.+.|...+.. -.+.|..+.. +.|+.+-+..+++.-...+ +.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 344556788888777777666655444422 2233333332 5677776666666543311 00
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcch----------------HHHHHHHHHhcCChHHHHHHHH
Q 036577 175 PDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVIT----------------YSTLINGLCRTGHTIVALNLFE 236 (470)
Q Consensus 175 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~----------------~~~l~~~~~~~g~~~~a~~~~~ 236 (470)
.|..- .+.+...+..|+.+-+.- +.+.|..++... -.+.+...+..|+.+-+..+++
T Consensus 89 ~d~~g-~t~L~~A~~~g~~~~v~~----Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 89 VYYRG-QTALHIAIERRCKHYVEL----LVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp SSEES-BCHHHHHHHTTCHHHHHH----HHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred cccCC-CCHHHHHHHcCCHHHHHH----HHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 00011 123344455677664444 444565555432 2234445566787665544444
No 296
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=41.24 E-value=1.5e+02 Score=24.40 Aligned_cols=90 Identities=12% Similarity=0.088 Sum_probs=50.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHC--CCCC----CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 036577 294 LIHGFCYANDWNEAKCLLIEMMDQ--GVQP----NVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDG 367 (470)
Q Consensus 294 li~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 367 (470)
-++.+....++++|.+++++..+. +.++ +.......+..-.....-.-+..+.+.+. . .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h--cCCHHHHHHHHHH
Confidence 477788888888888888876542 2121 11222222333333333334444444442 2 3355556666677
Q ss_pred HHcCCCHHHHHHHHHHHHH
Q 036577 368 FCLTGRVNRAKELFVSMES 386 (470)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~ 386 (470)
+.+.|+.++|.++|-+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 7778888888888765543
No 297
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=41.12 E-value=60 Score=24.89 Aligned_cols=47 Identities=17% Similarity=0.128 Sum_probs=22.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCC
Q 036577 111 NILFGCLAKNKHYDTVLSLFKRLNST--GLFPDLYTYNILINCFCKMGR 157 (470)
Q Consensus 111 ~~l~~~~~~~~~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~ 157 (470)
..++..+...++.-.|.++++.+.+. +...+..|.-.-+..+.+.|-
T Consensus 36 ~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 36 EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 34445555555555555555555544 333344444444444444443
No 298
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=40.75 E-value=1.9e+02 Score=25.57 Aligned_cols=75 Identities=12% Similarity=0.146 Sum_probs=41.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 036577 361 YNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKE--IEGALSLYSEMLSKGIKPDVVIYNTLFI 436 (470)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 436 (470)
...++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+....++..+...|+-+.......+..
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~ 296 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 296 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 456677777778888888887777432111 23334444444444332 3456677777776665544444443333
No 299
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=37.32 E-value=1.5e+02 Score=25.51 Aligned_cols=64 Identities=13% Similarity=0.247 Sum_probs=35.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCC
Q 036577 396 YSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQ--VERAFKLFDEMRRDGVA 460 (470)
Q Consensus 396 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~g~~ 460 (470)
...++.-|...|+.++|.+.++++..-.+. ...+...+..++-+.++ .+...+++..+.+.|+-
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 356677777788888888888877311111 11233334444444332 34456666666655543
No 300
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=37.01 E-value=1.3e+02 Score=22.64 Aligned_cols=62 Identities=15% Similarity=0.150 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCC--HHHHHHHHHHHHhCCC
Q 036577 216 STLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGF--VDKAKELFLKMKDENI 284 (470)
Q Consensus 216 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~ 284 (470)
..++.-|...|+.++|.+.++++.... -....+...+..++-+.++ .+.+..++..+...++
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~-------f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPH-------FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGG-------GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCc-------chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 445566666677777777776664211 1122333344444444322 3445556665655543
No 301
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=36.69 E-value=1.4e+02 Score=22.82 Aligned_cols=53 Identities=9% Similarity=0.036 Sum_probs=34.7
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCC--CHhHHHHHHH-H-----HHcCCCHHHHHHHHHHHHH
Q 036577 334 CKNGKMDEASRLLDLMIQIGVRP--NAFVYNTLMD-G-----FCLTGRVNRAKELFVSMES 386 (470)
Q Consensus 334 ~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~~~~ 386 (470)
...|++-+|.++++.+-.....+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34488888888888877665444 4455666666 2 2346777777777776654
No 302
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=36.55 E-value=2.5e+02 Score=25.72 Aligned_cols=16 Identities=44% Similarity=0.524 Sum_probs=9.1
Q ss_pred cCChHHHHHHHHHHHh
Q 036577 225 TGHTIVALNLFEEMAN 240 (470)
Q Consensus 225 ~g~~~~a~~~~~~~~~ 240 (470)
.|+..+++.+++.+..
T Consensus 205 ~Gd~R~lln~Le~a~~ 220 (447)
T 3pvs_A 205 NGDARRALNTLEMMAD 220 (447)
T ss_dssp CSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4566666666555543
No 303
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=35.39 E-value=73 Score=24.81 Aligned_cols=13 Identities=15% Similarity=0.309 Sum_probs=6.9
Q ss_pred HhcCChHHHHHHH
Q 036577 118 AKNKHYDTVLSLF 130 (470)
Q Consensus 118 ~~~~~~~~A~~~~ 130 (470)
+..|+.+....++
T Consensus 13 ~~~g~~~~v~~ll 25 (201)
T 3hra_A 13 ANQRDTKKVKEIL 25 (201)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHhccHHHHHHHH
Confidence 4456655555554
No 304
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=35.38 E-value=70 Score=24.92 Aligned_cols=13 Identities=15% Similarity=0.220 Sum_probs=5.7
Q ss_pred HhcCChHHHHHHH
Q 036577 223 CRTGHTIVALNLF 235 (470)
Q Consensus 223 ~~~g~~~~a~~~~ 235 (470)
+..|+.+-+..++
T Consensus 80 ~~~~~~~~~~~Ll 92 (201)
T 3hra_A 80 GAQGRTEILAYML 92 (201)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 3445544444333
No 305
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=35.38 E-value=32 Score=28.49 Aligned_cols=55 Identities=11% Similarity=0.005 Sum_probs=30.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCcch-------HHHHHHHHH--hcCChHHHHHHHHHH
Q 036577 184 IKGLCAESRIMEAAALFTKLKAFGCEPNVIT-------YSTLINGLC--RTGHTIVALNLFEEM 238 (470)
Q Consensus 184 ~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~-------~~~l~~~~~--~~g~~~~a~~~~~~~ 238 (470)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 3344566777777777776666655544332 233333321 456666666666554
No 306
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=34.30 E-value=1.1e+02 Score=21.06 Aligned_cols=30 Identities=7% Similarity=-0.087 Sum_probs=14.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 036577 378 KELFVSMESNRCMHDVFSYSILINGYCKNK 407 (470)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 407 (470)
..+.++....|+.|+..+...++..|...+
T Consensus 29 e~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 29 QQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 344444444455554455555555444443
No 307
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=33.93 E-value=1.4e+02 Score=21.79 Aligned_cols=62 Identities=15% Similarity=0.150 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCC--HHHHHHHHHHHHhCCC
Q 036577 216 STLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGF--VDKAKELFLKMKDENI 284 (470)
Q Consensus 216 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~ 284 (470)
..++.-|...|+.++|.+.++++.... -....+...+..++-+.++ .+.+..++..+...|+
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~-------f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPH-------FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGG-------GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCc-------cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 345556666677777776666664211 1122333344444444332 3445556666655543
No 308
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=33.56 E-value=8 Score=27.82 Aligned_cols=75 Identities=9% Similarity=-0.024 Sum_probs=50.2
Q ss_pred cCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 036577 76 SSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155 (470)
Q Consensus 76 ~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 155 (470)
+.|..+.+.+++++++.+.. .-..|.-.|...+..++.+-|.++++-....| +...|...+-.|...
T Consensus 11 ~~~~~ykkN~rw~qSI~L~K----------kDkLykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdL 77 (125)
T 3qil_A 11 SSGLVPRGSHMWKQSVELAK----------KDSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDL 77 (125)
T ss_dssp SCCCCSSSCCCCSSCCCCCS----------CCCCSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTC
T ss_pred cccchhhccccHHHHHHHHH----------hcccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhc
Confidence 45566666677776664431 12245556677777888888888888888765 666777777777776
Q ss_pred CCcchHHH
Q 036577 156 GRVSPGFV 163 (470)
Q Consensus 156 g~~~~a~~ 163 (470)
=+++-+++
T Consensus 78 lrpDvVLE 85 (125)
T 3qil_A 78 LRPDVVLE 85 (125)
T ss_dssp SCTTHHHH
T ss_pred cChHHHHH
Confidence 66665544
No 309
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=32.84 E-value=88 Score=21.41 Aligned_cols=32 Identities=9% Similarity=0.185 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCh
Q 036577 87 PNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHY 123 (470)
Q Consensus 87 ~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 123 (470)
.++|.++++.+.+++|. +|..++.++...|+.
T Consensus 53 ~~~ar~Lld~L~~rG~~-----Af~~F~~aL~et~~~ 84 (97)
T 3ygs_P 53 RDQARQLIIDLETRGSQ-----ALPLFISCLEDTGQD 84 (97)
T ss_dssp HHHHHHHHHHHTTSCTT-----HHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHcChH-----HHHHHHHHHHHcCcH
Confidence 44455555544443332 444444444443433
No 310
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=31.93 E-value=1.8e+02 Score=22.55 Aligned_cols=50 Identities=12% Similarity=0.057 Sum_probs=23.2
Q ss_pred HHHHHHHHHH-CCCCCCHhHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 036577 412 ALSLYSEMLS-KGIKPDVVIY--NTLFIGLFEIHQVERAFKLFDEMRRDGVAA 461 (470)
Q Consensus 412 A~~~~~~~~~-~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 461 (470)
-..+++.+++ .|..++.... .+-+....+.|..+...-+.+.+.+.+++.
T Consensus 132 ~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~ 184 (186)
T 3t8k_A 132 MIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184 (186)
T ss_dssp HHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhccc
Confidence 3445566666 5655543211 122333445566554444444444555543
No 311
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=31.36 E-value=2.6e+02 Score=24.28 Aligned_cols=116 Identities=12% Similarity=-0.003 Sum_probs=0.0
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CCh
Q 036577 333 LCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKN---KEI 409 (470)
Q Consensus 333 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~ 409 (470)
+...|++++|+..|+.++ +...+.......+.+++.++.....+ +....-++.-.+. .+.
T Consensus 124 ~~t~gKf~eAl~~Fr~iL----------~~i~l~~v~~~~e~~e~~eli~icrE-------Yilal~iEl~Rr~l~~~~~ 186 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREAI----------YRITLLMVDDAEDEKLAHKILETARE-------YILGLSIELERRSLKEGNT 186 (325)
T ss_dssp HHHTTCHHHHHHHHHHHH----------HHHHTCCBCSSHHHHHHHHHHHHHHH-------HHHHHHHHHHHHTCCTTCH
T ss_pred HHhcCCHHHHHHHHHHHH----------HHhheeeeccHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcCcccH
Q ss_pred hHHHHHHHHHHHCCCCCCHh--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 036577 410 EGALSLYSEMLSKGIKPDVV--IYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTWT 465 (470)
Q Consensus 410 ~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 465 (470)
...+++---+-.-.+.|... +...-+....+.+++..|..+.+++++.+-.|+...
T Consensus 187 kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~ 244 (325)
T 3mv2_A 187 VRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAE 244 (325)
T ss_dssp HHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHH
No 312
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=31.00 E-value=1.6e+02 Score=21.80 Aligned_cols=45 Identities=16% Similarity=0.106 Sum_probs=21.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 036577 112 ILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156 (470)
Q Consensus 112 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 156 (470)
.++..+...+..-.|.++++.+.+.+...+..|...-+..+.+.|
T Consensus 26 ~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 26 AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 344444444444455555555555443334444444444444444
No 313
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=30.44 E-value=1.8e+02 Score=22.20 Aligned_cols=52 Identities=8% Similarity=0.105 Sum_probs=31.8
Q ss_pred HcCChhHHHHHHHHHHHCCCCC--CHhHHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 036577 405 KNKEIEGALSLYSEMLSKGIKP--DVVIYNTLFI-G-----LFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~m~~ 456 (470)
..|++=+|-++|+..=.....+ +...|..||. . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3477777777777765543344 3445655555 1 2345777777777777754
No 314
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=30.34 E-value=3.3e+02 Score=25.17 Aligned_cols=141 Identities=13% Similarity=0.109 Sum_probs=84.8
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHH
Q 036577 85 ITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVV 164 (470)
Q Consensus 85 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 164 (470)
.+.+-|+++-.+. .-|--...|..-...+...|+|++|-.+-....+ |+-.+..|.+.+-.+-...|+..--+.+
T Consensus 343 ~n~~lA~~lA~R~----~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~Y 417 (494)
T 1bpo_A 343 QNPDLALRMAVRN----NLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQY 417 (494)
T ss_dssp CCHHHHHHHHHHT----TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred CCHHHHHHHHHhc----CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHH
Confidence 3456555554332 3323455677777888889999999888766543 4566777776666655566777777888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 036577 165 LGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMA 239 (470)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 239 (470)
|..+++.| ..+..----+++.....|+.+-.++.+.+ ..+..+.. ..-++ +..+..-|+.+|.+..
T Consensus 418 F~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e---~KL~~SEe-LGDlv----k~~d~~LAl~IY~~a~ 483 (494)
T 1bpo_A 418 FGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE---DKLECSEE-LGDLV----KSVDPTLALSVYLRAN 483 (494)
T ss_dssp HHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH---TCSCCCHH-HHHHH----HHHCSHHHHHHHHHHC
T ss_pred HHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhc---CCccccHH-hHhhh----hhcCHHHHHHHHHHcC
Confidence 88888776 44554444566666667776655554433 11222222 11111 3445666777766654
No 315
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=29.16 E-value=89 Score=26.36 Aligned_cols=20 Identities=40% Similarity=0.478 Sum_probs=10.9
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 036577 330 MDELCKNGKMDEASRLLDLM 349 (470)
Q Consensus 330 ~~~~~~~g~~~~a~~~~~~~ 349 (470)
+...+..|+.+-+..+++.-
T Consensus 165 L~~A~~~g~~~~v~~Ll~~g 184 (285)
T 3kea_A 165 IHITIKNGHVDMMILLLDYM 184 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHcC
Confidence 34445666666555555543
No 316
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=28.98 E-value=1.8e+02 Score=21.72 Aligned_cols=47 Identities=6% Similarity=-0.006 Sum_probs=23.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 036577 110 FNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156 (470)
Q Consensus 110 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 156 (470)
-..++..+...+..-.|.++++.+.+.+...+..|.-..+..+.+.|
T Consensus 29 R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 29 REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34444555444445555666665555443344444444444444444
No 317
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=28.88 E-value=70 Score=19.58 Aligned_cols=22 Identities=9% Similarity=0.066 Sum_probs=14.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC
Q 036577 441 IHQVERAFKLFDEMRRDGVAAD 462 (470)
Q Consensus 441 ~g~~~~A~~~~~~m~~~g~~p~ 462 (470)
.|+.+.|+..+-.|...+..|+
T Consensus 36 ~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTCHHHHHHHHHHSSCCCCSCC
T ss_pred CCCHHHHHHHHHcCcCCCCCCC
Confidence 5677777777777766555554
No 318
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=28.67 E-value=2.7e+02 Score=28.69 Aligned_cols=108 Identities=11% Similarity=0.042 Sum_probs=61.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------------------
Q 036577 294 LIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGV------------------- 354 (470)
Q Consensus 294 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------------------- 354 (470)
++..+...|.++-+.++..-. +.++..-..+..+|...|++++|...|+++-. |+
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~-----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC-----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 444555555555444322111 22333333445566666666666666654321 11
Q ss_pred ----CCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcC
Q 036577 355 ----RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDV----FSYSILINGYCKNK 407 (470)
Q Consensus 355 ----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 407 (470)
.....-|..++..+-+.+.++-+.++-+..++.--..|. ..|..+.++.+..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 011236788899999999999999988888764322233 35677777766554
No 319
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=27.92 E-value=1.3e+02 Score=21.88 Aligned_cols=45 Identities=7% Similarity=-0.051 Sum_probs=21.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 036577 364 LMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKE 408 (470)
Q Consensus 364 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 408 (470)
++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 344444444455556666666555433444444444444444443
No 320
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=27.72 E-value=47 Score=20.36 Aligned_cols=29 Identities=28% Similarity=0.131 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 036577 88 NEAFCIFDYMLNMRPSPPPVSSFNILFGCL 117 (470)
Q Consensus 88 ~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~ 117 (470)
++|...|-.+++.... ++.-+|...++.+
T Consensus 3 eEae~aF~~lL~~~~V-~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQV-DSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTC-CSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCC-CCCCcHHHHHHHh
Confidence 5666666666665544 3445566666665
No 321
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=27.13 E-value=1.6e+02 Score=23.38 Aligned_cols=14 Identities=14% Similarity=0.207 Sum_probs=6.8
Q ss_pred HHhcCChHHHHHHH
Q 036577 117 LAKNKHYDTVLSLF 130 (470)
Q Consensus 117 ~~~~~~~~~A~~~~ 130 (470)
.++.|+++....++
T Consensus 16 A~~~g~~~~~~~Ll 29 (240)
T 3eu9_A 16 ATQYGIYERCRELV 29 (240)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHcCChHHHHHHH
Confidence 34556655444433
No 322
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=26.89 E-value=1.8e+02 Score=21.64 Aligned_cols=43 Identities=9% Similarity=0.069 Sum_probs=19.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 036577 113 LFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156 (470)
Q Consensus 113 l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 156 (470)
++..+...+ .-.|.++++.+.+.+...+..|.-.-+..+.+.|
T Consensus 24 Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 24 VLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 333333333 4445555555554443334444444444444444
No 323
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=26.88 E-value=1.2e+02 Score=19.00 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=24.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 036577 110 FNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK 154 (470)
Q Consensus 110 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 154 (470)
++.++..++...-.++++-.+.++.+.| .-+...|..-+..+++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4555555555555666666666666655 4445555544444433
No 324
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=26.40 E-value=3.7e+02 Score=27.69 Aligned_cols=27 Identities=22% Similarity=0.071 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 430 IYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 430 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
-|..++..+.+.|-++-+.++.+..++
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 445555555556666666555555554
No 325
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=25.35 E-value=2.1e+02 Score=21.21 Aligned_cols=34 Identities=0% Similarity=-0.097 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 036577 374 VNRAKELFVSMESNRCMHDVFSYSILINGYCKNK 407 (470)
Q Consensus 374 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 407 (470)
.-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3345555555544433333333333333333333
No 326
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=25.10 E-value=1.1e+02 Score=22.58 Aligned_cols=47 Identities=9% Similarity=0.054 Sum_probs=26.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q 036577 363 TLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEI 409 (470)
Q Consensus 363 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 409 (470)
.++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34555555555666777777776665445555555555555555543
No 327
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=24.58 E-value=2.1e+02 Score=21.75 Aligned_cols=57 Identities=11% Similarity=0.010 Sum_probs=28.4
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcC
Q 036577 134 NSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS--CFTPDAVTFNSLIKGLCAES 191 (470)
Q Consensus 134 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g 191 (470)
.+.|+..+. .-..++..+...+..-.|.++++.+.+. +...+..|-..-+..+...|
T Consensus 25 ~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 25 RQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 334555543 2334445555555666666666666654 43444444333444444444
No 328
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=23.98 E-value=2.3e+02 Score=22.38 Aligned_cols=19 Identities=16% Similarity=0.046 Sum_probs=10.8
Q ss_pred HHHHHhcCChHHHHHHHHH
Q 036577 114 FGCLAKNKHYDTVLSLFKR 132 (470)
Q Consensus 114 ~~~~~~~~~~~~A~~~~~~ 132 (470)
+...++.|+.+....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3444556666666666554
No 329
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=23.93 E-value=5.1e+02 Score=25.25 Aligned_cols=44 Identities=7% Similarity=0.087 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036577 108 SSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153 (470)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 153 (470)
..| .++-.|.++|.+++|.++.++.... +..-...|...+..|+
T Consensus 154 p~W-a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~ 197 (661)
T 2qx5_A 154 PIW-ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYA 197 (661)
T ss_dssp EHH-HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC-
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHH
Confidence 356 4566788999999999988766432 1111134555555554
No 330
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=23.47 E-value=1.3e+02 Score=22.17 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc
Q 036577 111 NILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158 (470)
Q Consensus 111 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 158 (470)
..++..+...++.-.|.++++.+.+.+...+..|.-.-+..+.+.|-+
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 445555555556666777777777665455666666666666666643
No 331
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=23.43 E-value=1.5e+02 Score=21.50 Aligned_cols=46 Identities=15% Similarity=0.130 Sum_probs=27.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 036577 112 ILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157 (470)
Q Consensus 112 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 157 (470)
.++..+...+..-.|.++++.+.+.+...+..|....+..+.+.|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 4455555555566677777777666544455555555566666554
No 332
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=23.33 E-value=1.6e+02 Score=19.97 Aligned_cols=24 Identities=17% Similarity=0.007 Sum_probs=13.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHH
Q 036577 396 YSILINGYCKNKEIEGALSLYSEM 419 (470)
Q Consensus 396 ~~~l~~~~~~~g~~~~A~~~~~~~ 419 (470)
+.-....+.+.|++|+|++..+..
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHH
Confidence 344455566666666666655443
No 333
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=23.21 E-value=2.4e+02 Score=21.25 Aligned_cols=69 Identities=13% Similarity=0.087 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 036577 139 FPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTP-DAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEP 210 (470)
Q Consensus 139 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~ 210 (470)
..|..-...-+. |++ ..+++.++|..|...|+-. -...|......+-..|++.+|.++|+.-.+.+-.|
T Consensus 65 knD~RyLklWl~-ya~--~~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 65 HNDPRFISYCLK-FAE--YNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp TTCHHHHHHHHH-HHT--TBSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHH-HHH--hcCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 445544433332 222 2356899999999987654 45678888888999999999999999988876555
No 334
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=22.80 E-value=4.4e+02 Score=24.09 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=15.3
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHh
Q 036577 335 KNGKMDEASRLLDLMIQIGVRPNAF 359 (470)
Q Consensus 335 ~~g~~~~a~~~~~~~~~~~~~~~~~ 359 (470)
+.++.+.|+.++.+|.+.|..|...
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i 291 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYV 291 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHH
Confidence 3456667777777777666554433
No 335
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=22.76 E-value=2.9e+02 Score=21.97 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=17.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcC
Q 036577 218 LINGLCRTGHTIVALNLFEEMANGN 242 (470)
Q Consensus 218 l~~~~~~~g~~~~a~~~~~~~~~~~ 242 (470)
.+..|.+.|.+++|.+++++.....
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~~ 147 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGDP 147 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---
T ss_pred HHHHHHHccchHHHHHHHHHHhcCC
Confidence 3456888999999999999876554
No 336
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=22.34 E-value=2.8e+02 Score=21.62 Aligned_cols=154 Identities=12% Similarity=0.039 Sum_probs=86.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHH
Q 036577 105 PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLI 184 (470)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 184 (470)
++...-...+..+.+.|.. .+...+.++.. .++...-...+.++.+.++.+ +...+..+++ .++..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 3566666667777777764 45555555554 357777777778888877643 4444444443 45666666777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHH
Q 036577 185 KGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLC 264 (470)
Q Consensus 185 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 264 (470)
.++.+.++.+ +...+.++.+ .++..+-...+.++.+.|+.+ +...+..+.. .++..+-...+.++.
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---------d~~~~vr~~a~~aL~ 168 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---------DEDGWVRQSAADALG 168 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---------CSSHHHHHHHHHHHH
T ss_pred HHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---------CCCHHHHHHHHHHHH
Confidence 7777777643 3333334443 245555555566666666543 3444444432 345555555566666
Q ss_pred hCCCHHHHHHHHHHHHh
Q 036577 265 KEGFVDKAKELFLKMKD 281 (470)
Q Consensus 265 ~~g~~~~a~~~~~~~~~ 281 (470)
+.+. .++...+..+..
T Consensus 169 ~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 169 EIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHCS-HHHHHHHHHHHH
T ss_pred HhCc-hhHHHHHHHHHh
Confidence 6555 334444444443
No 337
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=21.48 E-value=2.4e+02 Score=20.52 Aligned_cols=62 Identities=5% Similarity=0.017 Sum_probs=36.2
Q ss_pred HHHHcCCCCCHhHHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChh
Q 036577 348 LMIQIGVRPNAFVYNTLMDGFCLTG-RVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIE 410 (470)
Q Consensus 348 ~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 410 (470)
.+.+.|.+++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-+.
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 45566666655433 3455555555 56677777777777655556665555555666665543
No 338
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.25 E-value=1.2e+02 Score=21.76 Aligned_cols=17 Identities=0% Similarity=-0.152 Sum_probs=7.7
Q ss_pred HhcCCcchHHHHHHHHH
Q 036577 153 CKMGRVSPGFVVLGRIL 169 (470)
Q Consensus 153 ~~~g~~~~a~~~~~~~~ 169 (470)
...++++.|.+++..+.
T Consensus 72 l~~~dy~~A~~ih~~l~ 88 (118)
T 2yru_A 72 LLHHQWDAADDIHRSLM 88 (118)
T ss_dssp HHHTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 33444444444444443
No 339
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=20.89 E-value=3.1e+02 Score=21.62 Aligned_cols=18 Identities=17% Similarity=0.030 Sum_probs=9.2
Q ss_pred HHHHhcCChHHHHHHHHH
Q 036577 220 NGLCRTGHTIVALNLFEE 237 (470)
Q Consensus 220 ~~~~~~g~~~~a~~~~~~ 237 (470)
...+..|+.+-+..+++.
T Consensus 42 ~~A~~~g~~~~v~~Ll~~ 59 (232)
T 2rfa_A 42 HIAALYDNLEAAMVLMEA 59 (232)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHc
Confidence 334455666555555443
No 340
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=20.63 E-value=1.9e+02 Score=26.00 Aligned_cols=54 Identities=11% Similarity=0.126 Sum_probs=27.5
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHh---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 036577 402 GYCKNKEIEGALSLYSEMLSKGIKPDVV---IYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTW 464 (470)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 464 (470)
..+..|+.+ +.+.+++.|..++.. -++.| ......|+.+ +.+.+.+.|..|+..
T Consensus 317 ~A~~~g~~~----~v~~Ll~~gad~n~~~~~g~t~L-~~A~~~g~~~----iv~~Ll~~ga~~~~~ 373 (437)
T 1n11_A 317 VASHYGNIK----LVKFLLQHQADVNAKTKLGYSPL-HQAAQQGHTD----IVTLLLKNGASPNEV 373 (437)
T ss_dssp HHHHSSCSH----HHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHH----HHHHHHHTTCCSCCC
T ss_pred HHHHcCcHH----HHHHHHhcCCCCCCCCCCCCCHH-HHHHHCChHH----HHHHHHHCcCCCCCC
Confidence 344566654 344445556555432 22233 3334566654 445566778877653
No 341
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=20.62 E-value=2.7e+02 Score=20.75 Aligned_cols=62 Identities=8% Similarity=0.060 Sum_probs=32.9
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q 036577 347 DLMIQIGVRPNAFVYNTLMDGFCLTG-RVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEI 409 (470)
Q Consensus 347 ~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 409 (470)
+.+.+.|.+++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 344555666554432 3444444444 4556667777666655444555555555555555544
No 342
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=20.58 E-value=1.6e+02 Score=21.10 Aligned_cols=41 Identities=12% Similarity=0.100 Sum_probs=20.2
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 036577 276 FLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMD 316 (470)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (470)
|+.+....+.|++..--.-+..+...++++.|..+...+..
T Consensus 49 fdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 49 REQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444443333333333344556666666666666554
No 343
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=20.19 E-value=1e+02 Score=25.54 Aligned_cols=56 Identities=11% Similarity=-0.033 Sum_probs=31.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCC-------CHHHHHHHHHHHH--hcCCcchHHHHHHHH
Q 036577 113 LFGCLAKNKHYDTVLSLFKRLNSTGLFP-------DLYTYNILINCFC--KMGRVSPGFVVLGRI 168 (470)
Q Consensus 113 l~~~~~~~~~~~~A~~~~~~m~~~~~~~-------~~~~~~~li~~~~--~~g~~~~a~~~~~~~ 168 (470)
.+...++.|+.+.+..+++.....+... +..-++.|..++. +.|+.+-+..+++.-
T Consensus 16 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 16 SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp HHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 3444556788888877877766554322 2233444444443 247776666666653
Done!