BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036580
(186 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O23310|NFYB3_ARATH Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana
GN=NFYB3 PE=2 SV=1
Length = 161
Score = 210 bits (535), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 102/120 (85%), Positives = 107/120 (89%), Gaps = 5/120 (4%)
Query: 1 MGDSDNDSGGERERQHGSSRELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQE 60
M DSDNDSGG H S REQDRFLPIANVSRIMKKALPANAKISKDAKETVQE
Sbjct: 1 MADSDNDSGG-----HKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQE 55
Query: 61 CVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGEK 120
CVSEFISF+TGEASDKCQREKRKTINGDDLLWAMTTLGFE+YVEPLKVYLQ++RE+EGEK
Sbjct: 56 CVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEK 115
>sp|Q9FGJ3|NFYB2_ARATH Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana
GN=NFYB2 PE=2 SV=1
Length = 190
Score = 204 bits (519), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 103/121 (85%), Positives = 112/121 (92%), Gaps = 1/121 (0%)
Query: 1 MGDSDNDSGGERERQHGSSRE-LSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQ 59
MGDSD DSGG + + + + LSPREQDRFLPIANVSRIMKKALPANAKISKDAKET+Q
Sbjct: 1 MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60
Query: 60 ECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGE 119
ECVSEFISFVTGEASDKCQ+EKRKTINGDDLLWAMTTLGFE+YVEPLKVYLQRFRE+EGE
Sbjct: 61 ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120
Query: 120 K 120
+
Sbjct: 121 R 121
>sp|P25209|NFYB_MAIZE Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2
SV=1
Length = 179
Score = 197 bits (500), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 95/144 (65%), Positives = 108/144 (75%), Gaps = 2/144 (1%)
Query: 25 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKT 84
REQDRFLPIAN+SRIMKKA+PAN KI+KDAKETVQECVSEFISF+T EASDKCQREKRKT
Sbjct: 30 REQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKT 89
Query: 85 INGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGEK--MARDKDAPPGHGVGGAIGGEYG 142
INGDDLLWAM TLGFE+Y+EPLKVYLQ++REMEG+ A+ D G +G
Sbjct: 90 INGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKSSDGSIKKDALGHVGASSS 149
Query: 143 GMMMMGHGGQLNQGNVYGSGGFHH 166
MG G NQG Y +H+
Sbjct: 150 AAEGMGQQGAYNQGMGYMQPQYHN 173
>sp|Q60EQ4|NFYB3_ORYSJ Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp.
japonica GN=NFYB3 PE=1 SV=2
Length = 185
Score = 188 bits (477), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 83/95 (87%), Positives = 92/95 (96%)
Query: 25 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKT 84
REQDRFLPIAN+SRIMKKA+PAN KI+KDAKETVQECVSEFISF+T EASDKCQREKRKT
Sbjct: 37 REQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKT 96
Query: 85 INGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGE 119
INGDDLLWAM TLGFE+Y+EPLKVYLQ++REMEG+
Sbjct: 97 INGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGD 131
>sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana
GN=NFYB8 PE=2 SV=1
Length = 173
Score = 185 bits (470), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 88/114 (77%), Positives = 99/114 (86%), Gaps = 5/114 (4%)
Query: 6 NDSGGERERQHGSSRELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEF 65
++SGG++ S R L REQDRFLPIAN+SRIMK+ LPAN KI+KDAKE VQECVSEF
Sbjct: 15 HESGGDQ-----SPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEF 69
Query: 66 ISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGE 119
ISFVT EASDKCQREKRKTINGDDLLWAM TLGFE+Y+EPLKVYL R+REMEG+
Sbjct: 70 ISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGD 123
>sp|Q67XJ2|NFYBA_ARATH Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana
GN=NFYB10 PE=2 SV=1
Length = 176
Score = 184 bits (466), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 83/102 (81%), Positives = 93/102 (91%)
Query: 18 SSRELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKC 77
S R L+ REQDRFLPIAN+SRIMK+ LP N KI+KDAKET+QECVSEFISFVT EASDKC
Sbjct: 21 SPRSLNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASDKC 80
Query: 78 QREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGE 119
QREKRKTINGDDLLWAM TLGFE+Y++PLKVYL R+REMEG+
Sbjct: 81 QREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREMEGD 122
>sp|Q9SIT9|NFYB7_ARATH Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana
GN=NFYB7 PE=2 SV=1
Length = 215
Score = 179 bits (454), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 82/101 (81%), Positives = 91/101 (90%)
Query: 25 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKT 84
+EQDRFLPIANV RIMKK LP N KISKDAKETVQECVSEFISFVTGEASDKCQREKRKT
Sbjct: 35 KEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKT 94
Query: 85 INGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGEKMARDK 125
INGDD++WA+TTLGFE+YV PLKVYL ++R+ EGEK+ K
Sbjct: 95 INGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVNSPK 135
>sp|Q9SLG0|NFYB1_ARATH Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana
GN=NFYB1 PE=1 SV=2
Length = 141
Score = 177 bits (449), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 83/119 (69%), Positives = 96/119 (80%), Gaps = 1/119 (0%)
Query: 23 SPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKR 82
S REQDR+LPIAN+SRIMKKALP N KI KDAK+TVQECVSEFISF+T EASDKCQ+EKR
Sbjct: 18 SVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDKCQKEKR 77
Query: 83 KTINGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGEKMARDKDAP-PGHGVGGAIGGE 140
KT+NGDDLLWAM TLGFE+Y+EPLK+YL R+RE+EG+ K GG + GE
Sbjct: 78 KTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGKSGDGSNRDAGGGVSGE 136
>sp|Q5QMG3|NFYB2_ORYSJ Nuclear transcription factor Y subunit B-2 OS=Oryza sativa subsp.
japonica GN=NFYB2 PE=2 SV=1
Length = 178
Score = 173 bits (438), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 83/119 (69%), Positives = 98/119 (82%), Gaps = 6/119 (5%)
Query: 1 MGDSDNDSGGERERQHGSSRELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQE 60
M D+ +D G R G REQDRFLPIAN+SRIMKKA+PAN KI+KDAKET+QE
Sbjct: 15 MADAGHDESGSPPRSGGV------REQDRFLPIANISRIMKKAVPANGKIAKDAKETLQE 68
Query: 61 CVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGE 119
CVSEFISFVT EASDKCQ+EKRKTING+DLL+AM TLGFEEYV+PLK+YL ++RE+ G+
Sbjct: 69 CVSEFISFVTSEASDKCQKEKRKTINGEDLLFAMGTLGFEEYVDPLKIYLHKYREVIGD 127
>sp|Q54WV0|NFYB_DICDI Nuclear transcription factor Y subunit beta OS=Dictyostelium
discoideum GN=nfyB PE=3 SV=1
Length = 490
Score = 165 bits (417), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 72/93 (77%), Positives = 85/93 (91%)
Query: 25 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKT 84
REQDR+LPIAN+ RIMKKALP NAK++KDAKETVQ+CVSEFISF+T EASDKCQ+EKRKT
Sbjct: 47 REQDRYLPIANIIRIMKKALPNNAKVAKDAKETVQDCVSEFISFITSEASDKCQQEKRKT 106
Query: 85 INGDDLLWAMTTLGFEEYVEPLKVYLQRFREME 117
ING+D++ AM +LGFE YVEPLKVYL ++RE E
Sbjct: 107 INGEDIIAAMVSLGFENYVEPLKVYLLKYRETE 139
>sp|P63140|NFYB_RAT Nuclear transcription factor Y subunit beta OS=Rattus norvegicus
GN=Nfyb PE=1 SV=1
Length = 207
Score = 164 bits (415), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 83/141 (58%), Positives = 103/141 (73%), Gaps = 14/141 (9%)
Query: 3 DSDNDSGGERERQHGSSRELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 62
D DS + E +GS S REQD +LPIANV+RIMK A+P KI+KDAKE VQECV
Sbjct: 33 DDTEDSMNDHEDTNGSKE--SFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECV 90
Query: 63 SEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFRE-MEGEKM 121
SEFISF+T EAS++C +EKRKTING+D+L+AM+TLGF+ YVEPLK+YLQ+FRE M+GEK
Sbjct: 91 SEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEK- 149
Query: 122 ARDKDAPPGHGVGGAIGGEYG 142
G+GGA+ G
Sbjct: 150 ----------GIGGAVSATDG 160
>sp|P63139|NFYB_MOUSE Nuclear transcription factor Y subunit beta OS=Mus musculus GN=Nfyb
PE=1 SV=1
Length = 207
Score = 164 bits (415), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 83/141 (58%), Positives = 103/141 (73%), Gaps = 14/141 (9%)
Query: 3 DSDNDSGGERERQHGSSRELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 62
D DS + E +GS S REQD +LPIANV+RIMK A+P KI+KDAKE VQECV
Sbjct: 33 DDTEDSMNDHEDTNGSKE--SFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECV 90
Query: 63 SEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFRE-MEGEKM 121
SEFISF+T EAS++C +EKRKTING+D+L+AM+TLGF+ YVEPLK+YLQ+FRE M+GEK
Sbjct: 91 SEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEK- 149
Query: 122 ARDKDAPPGHGVGGAIGGEYG 142
G+GGA+ G
Sbjct: 150 ----------GIGGAVSATDG 160
>sp|Q32KW0|NFYB_BOVIN Nuclear transcription factor Y subunit beta OS=Bos taurus GN=NFYB
PE=2 SV=1
Length = 207
Score = 164 bits (414), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 83/141 (58%), Positives = 103/141 (73%), Gaps = 14/141 (9%)
Query: 3 DSDNDSGGERERQHGSSRELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 62
D DS + E +GS S REQD +LPIANV+RIMK A+P KI+KDAKE VQECV
Sbjct: 33 DDTEDSMNDHEDTNGSKE--SFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECV 90
Query: 63 SEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFRE-MEGEKM 121
SEFISF+T EAS++C +EKRKTING+D+L+AM+TLGF+ YVEPLK+YLQ+FRE M+GEK
Sbjct: 91 SEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEK- 149
Query: 122 ARDKDAPPGHGVGGAIGGEYG 142
G+GGA+ G
Sbjct: 150 ----------GIGGAVTATDG 160
>sp|P25208|NFYB_HUMAN Nuclear transcription factor Y subunit beta OS=Homo sapiens GN=NFYB
PE=1 SV=2
Length = 207
Score = 164 bits (414), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 83/141 (58%), Positives = 103/141 (73%), Gaps = 14/141 (9%)
Query: 3 DSDNDSGGERERQHGSSRELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 62
D DS + E +GS S REQD +LPIANV+RIMK A+P KI+KDAKE VQECV
Sbjct: 33 DDTEDSMNDHEDTNGSKE--SFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECV 90
Query: 63 SEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFRE-MEGEKM 121
SEFISF+T EAS++C +EKRKTING+D+L+AM+TLGF+ YVEPLK+YLQ+FRE M+GEK
Sbjct: 91 SEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEK- 149
Query: 122 ARDKDAPPGHGVGGAIGGEYG 142
G+GGA+ G
Sbjct: 150 ----------GIGGAVTATDG 160
>sp|Q6RG77|NFYB_HORSE Nuclear transcription factor Y subunit beta OS=Equus caballus
GN=NFYB PE=2 SV=1
Length = 207
Score = 164 bits (414), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 83/141 (58%), Positives = 103/141 (73%), Gaps = 14/141 (9%)
Query: 3 DSDNDSGGERERQHGSSRELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 62
D DS + E +GS S REQD +LPIANV+RIMK A+P KI+KDAKE VQECV
Sbjct: 33 DDTEDSMNDHEDTNGSKE--SFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECV 90
Query: 63 SEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFRE-MEGEKM 121
SEFISF+T EAS++C +EKRKTING+D+L+AM+TLGF+ YVEPLK+YLQ+FRE M+GEK
Sbjct: 91 SEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEK- 149
Query: 122 ARDKDAPPGHGVGGAIGGEYG 142
G+GGA+ G
Sbjct: 150 ----------GIGGAVTATDG 160
>sp|Q65XK1|NFYB4_ORYSJ Nuclear transcription factor Y subunit B-4 OS=Oryza sativa subsp.
japonica GN=NFYB4 PE=2 SV=2
Length = 143
Score = 162 bits (409), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/123 (63%), Positives = 98/123 (79%), Gaps = 3/123 (2%)
Query: 25 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKT 84
+EQDRFLPIAN+ RIM++A+P N KI+KD+KE+VQECVSEFISF+T EASDKC +EKRKT
Sbjct: 21 KEQDRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFISFITSEASDKCLKEKRKT 80
Query: 85 INGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGE-KMARDKDAPPGHGV--GGAIGGEY 141
INGDDL+W+M TLGFE+YVEPLK+YL+ +RE EG+ K +R + P V G G +
Sbjct: 81 INGDDLIWSMGTLGFEDYVEPLKLYLRLYRETEGDTKGSRASELPVKKDVVLNGDPGSSF 140
Query: 142 GGM 144
GM
Sbjct: 141 EGM 143
>sp|P25207|NFYB_CHICK Nuclear transcription factor Y subunit beta OS=Gallus gallus
GN=NFYB PE=2 SV=2
Length = 205
Score = 162 bits (409), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/136 (59%), Positives = 101/136 (74%), Gaps = 14/136 (10%)
Query: 3 DSDNDSGGERERQHGSSRELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 62
D DS + E +GS S REQD +LPIANV+RIMK A+P KI+KDAKE VQECV
Sbjct: 31 DDTEDSMNDHEDTNGSKE--SFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECV 88
Query: 63 SEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFRE-MEGEKM 121
SEFISF+T EAS++C +EKRKTING+D+L+AM+TLGF+ YVEPLK+YLQ+FRE M+GEK
Sbjct: 89 SEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEK- 147
Query: 122 ARDKDAPPGHGVGGAI 137
G+GG +
Sbjct: 148 ----------GIGGTV 153
>sp|Q84W66|NFYB6_ARATH Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana
GN=NFYB6 PE=1 SV=2
Length = 234
Score = 162 bits (409), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 68/105 (64%), Positives = 92/105 (87%)
Query: 16 HGSSRELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASD 75
+G E + REQDRF+PIANV RIM++ LPA+AKIS D+KET+QECVSE+ISF+TGEA++
Sbjct: 48 NGGEEECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEANE 107
Query: 76 KCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGEK 120
+CQRE+RKTI +D+LWAM+ LGF++Y+EPL +YL R+RE+EGE+
Sbjct: 108 RCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 152
>sp|O82248|NFYB5_ARATH Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana
GN=NFYB5 PE=2 SV=1
Length = 160
Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/111 (68%), Positives = 87/111 (78%), Gaps = 7/111 (6%)
Query: 25 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKT 84
+EQDR LPIANV RIMK LPANAK+SK+AKET+QECVSEFISFVTGEASDKC +EKRKT
Sbjct: 50 KEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRKT 109
Query: 85 INGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGEKMARDKDAPPGHGVGG 135
+NGDD+ WAM LGF++Y LK YL R+R +EGEK P HG GG
Sbjct: 110 VNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEK-------PNHHGKGG 153
>sp|P25210|NFYB_PETMA Nuclear transcription factor Y subunit beta OS=Petromyzon marinus
GN=NFYB PE=2 SV=1
Length = 209
Score = 157 bits (396), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 76/136 (55%), Positives = 99/136 (72%), Gaps = 6/136 (4%)
Query: 25 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKT 84
REQD +LPIANV+RIMK ++P++ KI+KDAKE VQECVSEFISF+T EAS++C +EKRKT
Sbjct: 54 REQDIYLPIANVARIMKTSIPSSGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKT 113
Query: 85 INGDDLLWAMTTLGFEEYVEPLKVYLQRFRE-MEGEK-----MARDKDAPPGHGVGGAIG 138
ING+D+L+AM+TLGF+ YVEPLK YLQ++RE M+GEK + DA P +
Sbjct: 114 INGEDILFAMSTLGFDSYVEPLKQYLQKYRESMKGEKGINATVVTTTDAIPEELTEESFS 173
Query: 139 GEYGGMMMMGHGGQLN 154
G ++ G Q N
Sbjct: 174 GPLATSIITADGQQQN 189
>sp|Q9SFD8|NFYB9_ARATH Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana
GN=NFYB9 PE=1 SV=2
Length = 238
Score = 155 bits (393), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/148 (51%), Positives = 104/148 (70%), Gaps = 8/148 (5%)
Query: 25 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKT 84
REQD+++PIANV RIM+K LP++AKIS DAKET+QECVSE+ISFVTGEA+++CQRE+RKT
Sbjct: 58 REQDQYMPIANVIRIMRKTLPSHAKISDDAKETIQECVSEYISFVTGEANERCQREQRKT 117
Query: 85 INGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGEKMARDKDAPPGHGVGGAIGGEYGGM 144
I +D+LWAM+ LGF+ YV+PL V++ R+RE+E ++ + + PP ++ YGG
Sbjct: 118 ITAEDILWAMSKLGFDNYVDPLTVFINRYREIETDRGSALRGEPP------SLRQTYGGN 171
Query: 145 MMMGHGGQ--LNQGNVYGSGGFHHQMAM 170
+ HG L YG G M M
Sbjct: 172 GIGFHGPSHGLPPPGPYGYGMLDQSMVM 199
>sp|O04027|NFYB4_ARATH Nuclear transcription factor Y subunit B-4 OS=Arabidopsis thaliana
GN=NFYB4 PE=1 SV=1
Length = 139
Score = 138 bits (347), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 59/100 (59%), Positives = 80/100 (80%)
Query: 26 EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTI 85
++DR LPIANV R+MK+ LP+NAKISK+AK+TVQEC +EFISFVT EAS+KC RE RKT+
Sbjct: 3 DEDRLLPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRKTV 62
Query: 86 NGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGEKMARDK 125
NGDD+ WA++TLG + Y + + +L ++RE E E+ +K
Sbjct: 63 NGDDIWWALSTLGLDNYADAVGRHLHKYREAERERTEHNK 102
>sp|P13434|HAP3_YEAST Transcriptional activator HAP3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HAP3 PE=1 SV=1
Length = 144
Score = 137 bits (344), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 63/105 (60%), Positives = 83/105 (79%), Gaps = 1/105 (0%)
Query: 17 GSSRELSP-REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASD 75
GS +++S REQDR+LPI NV+R+MK LP +AK+SKDAKE +QECVSE ISFVT EASD
Sbjct: 27 GSLQQISTLREQDRWLPINNVARLMKNTLPPSAKVSKDAKECMQECVSELISFVTSEASD 86
Query: 76 KCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGEK 120
+C +KRKTING+D+L ++ LGFE Y E LK+YL ++R+ + K
Sbjct: 87 RCAADKRKTINGEDILISLHALGFENYAEVLKIYLAKYRQQQALK 131
>sp|P40914|HAP3_KLULA Transcriptional activator HAP3 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=HAP3 PE=3 SV=1
Length = 205
Score = 136 bits (343), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 64/117 (54%), Positives = 86/117 (73%), Gaps = 3/117 (2%)
Query: 5 DNDSGGERERQHGSS-RELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 63
D ++ E++ +H + EL+ EQDR+LPI NV+R+MK LPA K+SKDAKE +QECVS
Sbjct: 2 DTETEAEKQERHNNYLNELA--EQDRWLPINNVARLMKNTLPATTKVSKDAKECMQECVS 59
Query: 64 EFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGEK 120
EFISFVT EA D+C KRKTING+D+L ++ LGFE Y E LK+YL ++R+ + K
Sbjct: 60 EFISFVTSEACDRCTSGKRKTINGEDILLSLHALGFENYAEVLKIYLAKYRQQQAIK 116
>sp|P36611|HAP3_SCHPO Transcriptional activator hap3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=hap3 PE=3 SV=1
Length = 116
Score = 134 bits (337), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 60/89 (67%), Positives = 74/89 (83%)
Query: 30 FLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDD 89
LPIANV+RIMK ALP NAKISK+AK+ VQ+CVSEFISFVTGEAS++C +EKRKTI G+D
Sbjct: 11 LLPIANVARIMKSALPENAKISKEAKDCVQDCVSEFISFVTGEASEQCTQEKRKTITGED 70
Query: 90 LLWAMTTLGFEEYVEPLKVYLQRFREMEG 118
+L A+ TLGFE Y E LK+ L ++RE +
Sbjct: 71 VLLALNTLGFENYAEVLKISLTKYREQQA 99
>sp|P25211|NFYB_XENLA Nuclear transcription factor Y subunit beta (Fragment) OS=Xenopus
laevis GN=nfyb PE=2 SV=1
Length = 122
Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 12/81 (14%)
Query: 58 VQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFRE-M 116
VQECVSEFISF+T EAS++C +EKRKTING+D+L+AM+TLGF+ YVEPLK+YLQ+FRE M
Sbjct: 1 VQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAM 60
Query: 117 EGEKMARDKDAPPGHGVGGAI 137
+GEK G+GG +
Sbjct: 61 KGEK-----------GIGGTV 70
>sp|Q6Z348|NFYB1_ORYSJ Nuclear transcription factor Y subunit B-1 OS=Oryza sativa subsp.
japonica GN=NFYB1 PE=1 SV=2
Length = 186
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 55/87 (63%)
Query: 31 LPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDL 90
LP+AN+ R++KK LP AKI AK +C EF+ FV EAS+K + E R+T+ +D
Sbjct: 34 LPMANLVRLIKKVLPGKAKIGGAAKGLTHDCAVEFVGFVGDEASEKAKAEHRRTVAPEDY 93
Query: 91 LWAMTTLGFEEYVEPLKVYLQRFREME 117
L + LGF+ YV+P+ Y+ +RE E
Sbjct: 94 LGSFGDLGFDRYVDPMDAYIHGYREFE 120
>sp|P49592|NC2B_ARATH Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2 SV=1
Length = 159
Score = 74.3 bits (181), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Query: 27 QDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTIN 86
+D LP A +++I+K+ LP + ++++DA++ + EC EFI+ V+ E++D C +E ++TI
Sbjct: 12 EDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDVCNKEDKRTIA 71
Query: 87 GDDLLWAMTTLGFEEYVEPLKVY 109
+ +L A+ LGF EY+E +VY
Sbjct: 72 PEHVLKALQVLGFGEYIE--EVY 92
>sp|Q5R4W3|DPOE3_PONAB DNA polymerase epsilon subunit 3 OS=Pongo abelii GN=POLE3 PE=2 SV=1
Length = 147
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 22 LSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREK 81
++ R +D LP A ++RI+K+ALP ISK+A+ + S F+ + T A++ + K
Sbjct: 1 MAERPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGK 60
Query: 82 RKTINGDDLLWAMTTLGFEEYVEPLKVYLQRF-REMEGEKMARDK 125
RKT+N D+L AM + F+ +V PLK L+ + RE +G+K A ++
Sbjct: 61 RKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQ 105
>sp|Q9NRF9|DPOE3_HUMAN DNA polymerase epsilon subunit 3 OS=Homo sapiens GN=POLE3 PE=1 SV=1
Length = 147
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 22 LSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREK 81
++ R +D LP A ++RI+K+ALP ISK+A+ + S F+ + T A++ + K
Sbjct: 1 MAERPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGK 60
Query: 82 RKTINGDDLLWAMTTLGFEEYVEPLKVYLQRF-REMEGEKMARDK 125
RKT+N D+L AM + F+ +V PLK L+ + RE +G+K A ++
Sbjct: 61 RKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQ 105
>sp|Q3SZN5|DPOE3_BOVIN DNA polymerase epsilon subunit 3 OS=Bos taurus GN=POLE3 PE=2 SV=1
Length = 147
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 22 LSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREK 81
++ R +D LP A ++RI+K+ALP ISK+A+ + S F+ + T A++ + K
Sbjct: 1 MAERPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGK 60
Query: 82 RKTINGDDLLWAMTTLGFEEYVEPLKVYLQRF-REMEGEKMARDK 125
RKT+N D+L AM + F+ +V PLK L+ + RE +G+K A ++
Sbjct: 61 RKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQ 105
>sp|Q642A5|DPOE3_RAT DNA polymerase epsilon subunit 3 OS=Rattus norvegicus GN=Pole3 PE=2
SV=1
Length = 145
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 22 LSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREK 81
++ R +D LP A ++RI+K+ALP ISK+A+ + S F+ + T A++ + K
Sbjct: 1 MAERPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGK 60
Query: 82 RKTINGDDLLWAMTTLGFEEYVEPLKVYLQRF-REMEGEKMARDK 125
RKT+N D+L AM + F+ +V PLK L+ + RE +G+K A ++
Sbjct: 61 RKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQ 105
>sp|Q55DJ5|NC2B_DICDI Protein Dr1 homolog OS=Dictyostelium discoideum GN=dr1 PE=3 SV=1
Length = 178
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 53/80 (66%)
Query: 25 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKT 84
+E + LP A VS+++K+ LP + K S + ++ + EC EFI ++ EA+D C RE+++T
Sbjct: 7 KEDNLSLPKATVSKLIKEMLPQDVKCSNETRDLILECCVEFIHLISSEANDICGREQKRT 66
Query: 85 INGDDLLWAMTTLGFEEYVE 104
I + ++ A+T LGF +Y +
Sbjct: 67 IAAEHVIKALTELGFSDYTQ 86
>sp|Q9JKP7|DPOE3_MOUSE DNA polymerase epsilon subunit 3 OS=Mus musculus GN=Pole3 PE=2 SV=1
Length = 145
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 57/93 (61%)
Query: 22 LSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREK 81
++ R +D LP A ++RI+K+ALP ISK+A+ + S F+ + T A++ + K
Sbjct: 1 MAERPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGK 60
Query: 82 RKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFR 114
RKT+N D+L AM + F+ ++ PLK L+ +R
Sbjct: 61 RKTLNASDVLSAMEEMEFQRFITPLKEALEAYR 93
>sp|Q5XI68|NC2B_RAT Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1
Length = 176
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 28 DRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTING 87
D +P A +++++K+ LP N +++ DA+E V C +EFI ++ EA++ C + ++KTI+
Sbjct: 10 DLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISP 68
Query: 88 DDLLWAMTTLGFEEYVEPLKVYLQRFR 114
+ ++ A+ +LGF Y+ +K LQ +
Sbjct: 69 EHVIQALESLGFGSYISEVKEVLQECK 95
>sp|Q91WV0|NC2B_MOUSE Protein Dr1 OS=Mus musculus GN=Dr1 PE=2 SV=1
Length = 176
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 28 DRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTING 87
D +P A +++++K+ LP N +++ DA+E V C +EFI ++ EA++ C + ++KTI+
Sbjct: 10 DLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISP 68
Query: 88 DDLLWAMTTLGFEEYVEPLKVYLQRFR 114
+ ++ A+ +LGF Y+ +K LQ +
Sbjct: 69 EHVIQALESLGFGSYISEVKEVLQECK 95
>sp|Q01658|NC2B_HUMAN Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1
Length = 176
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 28 DRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTING 87
D +P A +++++K+ LP N +++ DA+E V C +EFI ++ EA++ C + ++KTI+
Sbjct: 10 DLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISP 68
Query: 88 DDLLWAMTTLGFEEYVEPLKVYLQRFR 114
+ ++ A+ +LGF Y+ +K LQ +
Sbjct: 69 EHVIQALESLGFGSYISEVKEVLQECK 95
>sp|Q5ZMV3|NC2B_CHICK Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1
Length = 176
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 28 DRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTING 87
D +P A +++++K+ LP N +++ DA+E V C +EFI ++ EA++ C + ++KTI+
Sbjct: 10 DLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISP 68
Query: 88 DDLLWAMTTLGFEEYVEPLKVYLQRFR 114
+ ++ A+ +LGF Y+ +K LQ +
Sbjct: 69 EHVIQALESLGFGSYISEVKEVLQECK 95
>sp|O14348|NC2B_SCHPO Negative cofactor 2 complex subunit beta OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ncb2 PE=3 SV=1
Length = 161
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 31 LPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDL 90
LP A V +++ LP + +K+A++ + EC EFI V+ EA++ C++E +KTI + +
Sbjct: 12 LPKATVQKMVSDILPVDLTFTKEARDLLIECCVEFIHLVSSEANEICEKEAKKTIAAEHI 71
Query: 91 LWAMTTLGFEEYV-EPLKV 108
+ A+ L F+EY+ E L+V
Sbjct: 72 IKALENLEFKEYIAEALEV 90
>sp|Q9VJQ5|NC2B_DROME Protein Dr1 OS=Drosophila melanogaster GN=NC2beta PE=1 SV=1
Length = 183
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Query: 31 LPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDL 90
LP A++++I+K+ +P +++ +++E + C SEFI ++ EA++ C +KTIN + +
Sbjct: 20 LPRASINKIIKELVP-TVRVANESRELILNCCSEFIHLISSEANEVCNMRNKKTINAEHV 78
Query: 91 LWAMTTLGFEEYVEPLKVYLQRFREMEGEK 120
L A+ LGF +Y + + L +E+ ++
Sbjct: 79 LEALERLGFHDYKQEAEAVLHDCKEVAAKR 108
>sp|Q92317|NCB2_YEAST Negative cofactor 2 complex subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NCB2 PE=1
SV=1
Length = 146
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%)
Query: 31 LPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDL 90
LP A V +++ + L + +KDA+E + EFI ++ AS+ E +KTI + +
Sbjct: 10 LPKATVQKMISEILDQDLMFTKDAREIIINSGIEFIMILSSMASEMADNEAKKTIAPEHV 69
Query: 91 LWAMTTLGFEEYVEPLKVYLQRFREMEGEKMARD 124
+ A+ L + E++ L+ L F+ + K RD
Sbjct: 70 IKALEELEYNEFIPFLEEILLNFKGSQKVKETRD 103
>sp|Q6CHS6|DPB4_YARLI DNA polymerase epsilon subunit D OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=DPB4 PE=3 SV=1
Length = 163
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 28 DRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTING 87
D P + + + K+ LP +A ISKDA +Q + F+S++ + + RK I
Sbjct: 34 DLLYPKSTIKNLAKETLPDDAIISKDALTAIQRAATLFVSYMASHGNASAEAGGRKKITP 93
Query: 88 DDLLWAMTTLGFEEYVEPLKVYLQRFREMEGEKMARDKD 126
D+ A+ + ++V + Q E E E R KD
Sbjct: 94 QDVFVALKDVDLAQFVPSV---TQSVNEFEQEVAQRKKD 129
>sp|P87174|DPB4_SCHPO DNA polymerase epsilon subunit D OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dpb4 PE=1 SV=1
Length = 210
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%)
Query: 28 DRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTING 87
D LP + + R++K LP + + K+A + + + F+SF+T + + RK +
Sbjct: 14 DLALPRSIIMRLVKGVLPEKSLVQKEALKAMINSATLFVSFLTSASGEIATNNNRKILMP 73
Query: 88 DDLLWAMTTLGFEEYVEPLKVYLQRFREMEGEK 120
D+L A+ + + E+ + LK +L+ + EK
Sbjct: 74 QDVLNALDEIEYPEFSKTLKKHLEAYELALKEK 106
>sp|Q6BIP4|DPB4_DEBHA DNA polymerase epsilon subunit D OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DPB4 PE=3 SV=2
Length = 247
Score = 38.5 bits (88), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 9/116 (7%)
Query: 30 FLPIANVSRIMKKALPA-------NAKISKDAKETVQECVSEFISFVTGEASDKCQREKR 82
P A V ++ K + A N ++KD+ +Q + F+S + +A + E R
Sbjct: 30 LFPRATVQKLAKNIMNASSDEGASNMILAKDSMIALQRSSTVFVSHLMFQARQISKDEGR 89
Query: 83 KTINGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEG--EKMARDKDAPPGHGVGGA 136
KTIN D+L A+ F ++ +K L F +K DK P GV +
Sbjct: 90 KTINAQDILSALEKAEFSGFIPEVKQKLSVFESNIALRKKHKADKKVPKPEGVDAS 145
>sp|O29910|HAF1_ARCFU Probable archaeal histone A1-1 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=hpyA1-1 PE=3 SV=1
Length = 72
Score = 36.6 bits (83), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 31 LPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDL 90
LP+A V R+++KA +++S+DAK + + + E+ + +A++ + RKT+ DD+
Sbjct: 8 LPLAPVERLLRKA--GASRVSEDAKVELAKAIEEYAMQIGKKAAELAKHAGRKTVKVDDI 65
Query: 91 LWAMTTL 97
A+ L
Sbjct: 66 KLALREL 72
>sp|O28779|HAF2_ARCFU Probable archaeal histone A1-2 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=hpyA1-2 PE=3 SV=1
Length = 67
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 31 LPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDL 90
LP+A V R+++KA ++S DA E + E + ++ V +A + + RKT+ DD+
Sbjct: 4 LPMAPVDRLIRKA--GAERVSADAVEKMVEVLEDYAITVAKKAVEIAKHSGRKTVTADDI 61
Query: 91 LWAMT 95
A++
Sbjct: 62 KLALS 66
>sp|Q9Y8I1|HARA_PYRKO Archaeal histone A OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=hpkA PE=3 SV=1
Length = 67
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 31 LPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDL 90
LPIA V R+++KA ++S+DA + + E + E+ ++ +A D + RKT+ +D+
Sbjct: 4 LPIAPVDRLIRKA--GAERVSEDAAKVLAEYLEEYAIELSKKAVDFARHAGRKTVKAEDI 61
Query: 91 LWAM 94
A+
Sbjct: 62 KLAI 65
>sp|P95669|HANA_THEZI Archaeal histone HAN1 subunit A OS=Thermococcus zilligii GN=han1A
PE=1 SV=3
Length = 67
Score = 33.9 bits (76), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 31 LPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDL 90
LPIA + R+++KA ++S+DA + + E + E+ V +A++ + RKT+ +D+
Sbjct: 4 LPIAPIDRLIRKA--GAERVSEDAAKALAEYLEEYAIEVGKKATEFARHAGRKTVKAEDV 61
Query: 91 LWAM 94
A+
Sbjct: 62 RLAV 65
>sp|P50483|HMT1_METTH DNA-binding protein HMt-1.1 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=hmtA1 PE=3 SV=2
Length = 68
Score = 33.9 bits (76), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 31 LPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDL 90
LPIA V RI+K A +IS DAKE + + + E ++ +A + + RKT+ D+
Sbjct: 4 LPIAPVGRIIKNA--GAQRISDDAKEALAKALEEMGEEISRKAVELAKHAGRKTVKATDI 61
Query: 91 LWAMTTL 97
A L
Sbjct: 62 EMAAKQL 68
>sp|P06146|H2BS2_LYTPI Histone H2B.2, sperm OS=Lytechinus pictus PE=2 SV=3
Length = 143
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 36 VSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMT 95
+ R++K+ P + IS + V++ + GEAS CQ +R+TI+ ++ A+
Sbjct: 59 IYRVLKQVHP-DTGISSRGMSVMNSFVNDVFERIAGEASRLCQANRRRTISSREIQTAVR 117
Query: 96 TL 97
L
Sbjct: 118 LL 119
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.133 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,009,871
Number of Sequences: 539616
Number of extensions: 3420747
Number of successful extensions: 11692
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 175
Number of HSP's that attempted gapping in prelim test: 9384
Number of HSP's gapped (non-prelim): 2015
length of query: 186
length of database: 191,569,459
effective HSP length: 111
effective length of query: 75
effective length of database: 131,672,083
effective search space: 9875406225
effective search space used: 9875406225
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)