Query 036580
Match_columns 186
No_of_seqs 173 out of 713
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 05:00:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036580.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036580hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2byk_B Chrac-14; nucleosome sl 100.0 1.6E-30 5.6E-35 204.0 11.9 106 24-129 3-108 (128)
2 1n1j_A NF-YB; histone-like PAI 100.0 5.5E-30 1.9E-34 189.7 11.6 92 24-115 2-93 (93)
3 1jfi_B DR1 protein, transcript 100.0 1.2E-29 4.2E-34 209.3 12.7 98 24-122 9-106 (179)
4 3b0c_W CENP-W, centromere prot 99.9 9.8E-22 3.4E-26 141.0 8.4 67 29-96 3-69 (76)
5 1f1e_A Histone fold protein; a 99.8 7.1E-21 2.4E-25 153.7 8.9 74 30-104 4-77 (154)
6 3b0c_T CENP-T, centromere prot 99.8 3.2E-20 1.1E-24 142.4 10.1 90 26-117 3-92 (111)
7 1b67_A Protein (histone HMFA); 99.8 4.3E-20 1.5E-24 129.0 8.0 66 30-97 2-67 (68)
8 2byk_A Chrac-16; nucleosome sl 99.8 3.2E-20 1.1E-24 147.6 3.8 98 25-123 14-115 (140)
9 4g92_C HAPE; transcription fac 99.7 5E-18 1.7E-22 131.3 8.2 77 26-103 37-113 (119)
10 1id3_B Histone H4; nucleosome 99.7 7.4E-18 2.5E-22 127.5 8.8 76 25-102 23-98 (102)
11 2hue_C Histone H4; mini beta s 99.7 4.8E-18 1.6E-22 124.1 7.2 76 25-102 5-80 (84)
12 1f1e_A Histone fold protein; a 99.7 1.4E-17 4.8E-22 134.5 9.9 75 20-96 72-146 (154)
13 1n1j_B NF-YC; histone-like PAI 99.7 7.8E-18 2.7E-22 125.7 7.6 79 25-104 14-92 (97)
14 1tzy_D Histone H4-VI; histone- 99.7 7.2E-17 2.5E-21 121.8 8.8 77 24-102 23-99 (103)
15 2yfw_B Histone H4, H4; cell cy 99.7 9E-17 3.1E-21 121.4 8.2 76 25-102 24-99 (103)
16 1ku5_A HPHA, archaeal histon; 99.7 1.4E-16 4.7E-21 112.1 8.1 64 30-95 6-69 (70)
17 1jfi_A Transcription regulator 99.6 3.5E-15 1.2E-19 111.7 5.5 77 27-104 8-84 (98)
18 2hue_B Histone H3; mini beta s 99.4 2.3E-12 7.8E-17 93.5 8.3 71 28-98 1-74 (77)
19 2yfv_A Histone H3-like centrom 99.3 4.1E-12 1.4E-16 96.1 7.5 72 24-95 21-98 (100)
20 3nqj_A Histone H3-like centrom 99.3 8.8E-12 3E-16 91.4 7.9 69 29-97 2-75 (82)
21 3r45_A Histone H3-like centrom 99.2 1.1E-11 3.6E-16 100.4 7.3 72 25-96 72-148 (156)
22 3nqu_A Histone H3-like centrom 99.2 1.2E-11 4.3E-16 98.5 7.5 75 25-99 56-135 (140)
23 1tzy_C Histone H3; histone-fol 99.2 2.6E-11 8.8E-16 96.2 8.0 74 25-98 57-133 (136)
24 1taf_B TFIID TBP associated fa 99.1 2E-10 7E-15 81.8 8.5 64 30-95 6-69 (70)
25 3vh5_A CENP-S; histone fold, c 99.0 8.7E-10 3E-14 87.8 8.3 77 35-117 24-101 (140)
26 4dra_A Centromere protein S; D 99.0 1E-09 3.6E-14 84.6 7.6 77 35-117 32-109 (113)
27 3b0b_B CENP-S, centromere prot 99.0 2.2E-09 7.4E-14 82.0 8.4 77 35-117 24-101 (107)
28 2ly8_A Budding yeast chaperone 98.9 3.2E-09 1.1E-13 82.8 7.4 56 47-102 62-117 (121)
29 3v9r_A MHF1, uncharacterized p 98.9 4.7E-09 1.6E-13 77.9 7.5 62 35-96 17-79 (90)
30 1taf_A TFIID TBP associated fa 98.9 1.1E-08 3.7E-13 72.5 8.6 61 34-96 5-65 (68)
31 2nqb_C Histone H2A; nucleosome 98.9 9.7E-09 3.3E-13 79.9 8.7 69 27-96 20-88 (123)
32 1f66_C Histone H2A.Z; nucleoso 98.8 1.4E-08 4.7E-13 79.6 8.8 70 27-96 24-93 (128)
33 2f8n_G Core histone macro-H2A. 98.8 1.7E-08 5.9E-13 78.2 8.7 69 27-96 19-87 (120)
34 1tzy_A Histone H2A-IV; histone 98.8 1.9E-08 6.4E-13 78.9 8.8 69 27-96 22-90 (129)
35 1id3_C Histone H2A.1; nucleoso 98.8 1.6E-08 5.6E-13 79.4 8.2 70 26-96 21-90 (131)
36 2f8n_K Histone H2A type 1; nuc 98.8 2.1E-08 7.1E-13 80.5 8.5 69 27-96 41-109 (149)
37 2l5a_A Histone H3-like centrom 98.7 3.2E-09 1.1E-13 90.7 3.0 61 36-98 167-227 (235)
38 2l5a_A Histone H3-like centrom 98.6 5.9E-08 2E-12 82.9 6.7 71 28-98 9-85 (235)
39 2jss_A Chimera of histone H2B. 98.6 1.3E-07 4.4E-12 78.0 8.4 70 27-96 102-171 (192)
40 2nqb_D Histone H2B; nucleosome 98.4 1.4E-06 4.8E-11 68.1 8.3 63 34-97 37-99 (123)
41 1tzy_B Histone H2B; histone-fo 98.3 1.9E-06 6.4E-11 67.6 8.2 63 34-97 40-102 (126)
42 1h3o_B Transcription initiatio 98.3 4.8E-06 1.6E-10 60.0 9.0 66 30-96 5-70 (76)
43 4dra_E Centromere protein X; D 98.1 2.2E-05 7.7E-10 57.5 9.4 69 28-96 10-79 (84)
44 2jss_A Chimera of histone H2B. 98.0 1.7E-05 5.7E-10 65.3 8.8 62 34-96 7-68 (192)
45 3b0b_C CENP-X, centromere prot 98.0 3.3E-05 1.1E-09 56.2 9.1 69 28-96 6-75 (81)
46 1bh9_B TAFII28; histone fold, 97.9 5.9E-05 2E-09 55.6 8.9 67 30-98 16-83 (89)
47 2ly8_A Budding yeast chaperone 97.5 0.00021 7.2E-09 55.5 6.3 58 30-87 1-67 (121)
48 3v9r_B MHF2, uncharacterized p 97.1 0.0014 4.9E-08 48.4 6.7 62 31-92 2-71 (88)
49 3ksy_A SOS-1, SON of sevenless 94.7 0.1 3.5E-06 51.8 9.1 68 27-96 101-168 (1049)
50 3uk6_A RUVB-like 2; hexameric 93.8 0.21 7.1E-06 41.8 7.9 66 31-96 259-329 (368)
51 1fnn_A CDC6P, cell division co 89.3 2.1 7.3E-05 35.4 9.1 74 31-104 193-281 (389)
52 2c9o_A RUVB-like 1; hexameric 88.0 1.2 3.9E-05 39.5 7.0 66 31-96 366-436 (456)
53 3kw6_A 26S protease regulatory 87.8 0.38 1.3E-05 32.7 3.0 59 38-97 10-73 (78)
54 2v1u_A Cell division control p 87.8 1 3.6E-05 37.1 6.2 67 31-97 201-276 (387)
55 1wwi_A Hypothetical protein TT 85.7 1.5 5.1E-05 35.0 5.7 59 30-90 2-60 (148)
56 2qby_A CDC6 homolog 1, cell di 85.5 2.2 7.6E-05 34.9 7.0 69 31-99 197-274 (386)
57 1r4v_A Hypothetical protein AQ 83.4 1.3 4.4E-05 36.1 4.4 63 26-90 20-84 (171)
58 3k1j_A LON protease, ATP-depen 82.3 6 0.0002 36.3 9.1 49 48-96 313-374 (604)
59 2r44_A Uncharacterized protein 80.7 9.8 0.00034 31.3 9.1 50 47-96 224-296 (331)
60 1g8p_A Magnesium-chelatase 38 78.9 11 0.00038 30.7 8.8 51 47-97 265-322 (350)
61 2dzn_B 26S protease regulatory 78.4 2.5 8.6E-05 28.9 4.0 30 68-97 39-68 (82)
62 3vlf_B 26S protease regulatory 77.4 2.9 9.9E-05 29.2 4.2 45 55-99 25-73 (88)
63 3aji_B S6C, proteasome (prosom 77.1 2.7 9.2E-05 28.6 3.8 33 66-98 40-72 (83)
64 2krk_A 26S protease regulatory 77.0 3 0.0001 29.2 4.1 43 55-97 35-81 (86)
65 2qby_B CDC6 homolog 3, cell di 74.7 5 0.00017 33.2 5.6 66 31-98 197-271 (384)
66 3h4m_A Proteasome-activating n 71.7 7.4 0.00025 31.1 5.8 63 33-96 190-257 (285)
67 1khy_A CLPB protein; alpha hel 71.2 12 0.00042 27.2 6.5 38 49-98 5-42 (148)
68 2chg_A Replication factor C sm 68.9 9.7 0.00033 28.0 5.5 63 31-95 161-224 (226)
69 1in4_A RUVB, holliday junction 68.8 17 0.00058 30.4 7.7 68 33-100 182-253 (334)
70 2y1q_A CLPC N-domain, negative 68.3 10 0.00034 27.9 5.5 38 49-98 5-42 (150)
71 3fh2_A Probable ATP-dependent 66.9 9 0.00031 28.4 5.0 37 49-97 6-42 (146)
72 3bos_A Putative DNA replicatio 66.8 13 0.00043 28.1 5.9 64 31-95 174-241 (242)
73 2kru_A Light-independent proto 65.0 6 0.00021 27.2 3.3 51 47-98 3-54 (63)
74 3pm8_A PFCDPK2, calcium-depend 64.1 19 0.00064 27.3 6.5 69 30-100 21-89 (197)
75 3fes_A ATP-dependent CLP endop 63.1 18 0.0006 26.8 6.0 39 48-98 6-44 (145)
76 1njg_A DNA polymerase III subu 61.1 14 0.00047 27.4 5.1 63 31-94 185-248 (250)
77 3fwb_A Cell division control p 60.5 40 0.0014 23.5 9.0 38 72-109 100-137 (161)
78 1k6k_A ATP-dependent CLP prote 59.2 9.7 0.00033 27.7 3.9 24 72-95 12-35 (143)
79 3fh2_A Probable ATP-dependent 58.7 51 0.0018 24.2 8.0 55 31-97 56-117 (146)
80 2l09_A ASR4154 protein; proto- 58.4 7.5 0.00026 26.6 2.8 49 48-97 3-52 (62)
81 3vfd_A Spastin; ATPase, microt 57.1 68 0.0023 27.1 9.4 69 32-100 283-368 (389)
82 3d8b_A Fidgetin-like protein 1 55.9 30 0.001 29.2 6.9 64 35-98 255-335 (357)
83 1w5s_A Origin recognition comp 55.8 42 0.0014 27.8 7.7 69 30-98 214-294 (412)
84 4b4t_K 26S protease regulatory 55.5 11 0.00037 34.0 4.2 57 39-96 352-413 (428)
85 1lv7_A FTSH; alpha/beta domain 55.1 15 0.00051 29.0 4.6 63 34-97 185-252 (257)
86 1ixz_A ATP-dependent metallopr 53.9 12 0.00042 29.4 3.9 58 36-94 191-253 (254)
87 4b4t_H 26S protease regulatory 53.9 9.3 0.00032 35.1 3.6 59 38-97 387-450 (467)
88 1bh9_A TAFII18; histone fold, 51.0 44 0.0015 21.1 5.9 40 35-75 5-44 (45)
89 5pal_A Parvalbumin; calcium-bi 50.1 45 0.0015 22.2 5.9 79 31-111 6-87 (109)
90 1k6k_A ATP-dependent CLP prote 50.1 52 0.0018 23.6 6.6 26 71-96 89-114 (143)
91 1hqc_A RUVB; extended AAA-ATPa 49.7 27 0.00093 28.1 5.4 70 31-100 168-241 (324)
92 3mse_B Calcium-dependent prote 49.7 73 0.0025 23.3 8.9 52 48-100 17-71 (180)
93 4b4t_I 26S protease regulatory 49.7 17 0.00058 33.1 4.6 59 37-96 359-422 (437)
94 4b4t_J 26S protease regulatory 49.2 18 0.00061 32.5 4.6 58 38-96 326-388 (405)
95 1uxc_A FRUR (1-57), fructose r 49.1 22 0.00076 23.6 4.0 35 30-65 11-45 (65)
96 1iy2_A ATP-dependent metallopr 49.0 21 0.00072 28.7 4.6 59 35-94 214-277 (278)
97 3b9p_A CG5977-PA, isoform A; A 48.4 54 0.0018 26.1 7.0 59 49-107 208-282 (297)
98 3pfi_A Holliday junction ATP-d 48.2 47 0.0016 27.1 6.7 70 31-100 184-257 (338)
99 4b4t_L 26S protease subunit RP 48.2 19 0.00064 32.5 4.6 32 65-96 390-421 (437)
100 3ox6_A Calcium-binding protein 48.0 63 0.0022 22.0 10.3 41 71-111 91-132 (153)
101 4ds7_A Calmodulin, CAM; protei 47.3 64 0.0022 21.9 10.0 43 71-113 87-129 (147)
102 3f9v_A Minichromosome maintena 46.5 10 0.00035 35.1 2.6 48 49-96 521-586 (595)
103 3pvs_A Replication-associated 45.9 39 0.0013 30.0 6.3 68 30-97 164-244 (447)
104 1wlz_A DJBP, CAP-binding prote 45.4 64 0.0022 21.4 6.7 29 72-100 28-56 (105)
105 3zri_A CLPB protein, CLPV; cha 44.8 22 0.00075 27.8 4.0 37 49-97 24-60 (171)
106 4b4t_M 26S protease regulatory 44.4 19 0.00065 32.5 4.0 43 55-97 376-422 (434)
107 3fs7_A Parvalbumin, thymic; ca 44.2 67 0.0023 21.3 7.6 79 30-110 6-87 (109)
108 3fes_A ATP-dependent CLP endop 44.1 29 0.00099 25.6 4.4 39 48-98 80-118 (145)
109 1tiz_A Calmodulin-related prot 43.9 49 0.0017 19.6 5.0 27 74-100 7-33 (67)
110 2f3n_A SH3 and multiple ankyri 42.4 23 0.00078 23.9 3.3 23 85-107 5-27 (76)
111 1bu3_A Calcium-binding protein 42.3 73 0.0025 21.1 6.5 79 30-110 6-87 (109)
112 3f8t_A Predicted ATPase involv 42.0 97 0.0033 28.9 8.4 67 30-96 393-482 (506)
113 2pvb_A Protein (parvalbumin); 42.0 69 0.0024 21.2 5.8 65 31-97 6-70 (108)
114 2lmt_A Calmodulin-related prot 41.7 90 0.0031 22.0 6.7 41 71-111 86-126 (148)
115 2kz2_A Calmodulin, CAM; TR2C, 41.2 65 0.0022 21.5 5.6 27 74-100 35-61 (94)
116 3k21_A PFCDPK3, calcium-depend 40.9 23 0.0008 26.6 3.5 30 71-100 55-84 (191)
117 1avs_A Troponin C; muscle cont 40.1 37 0.0013 22.0 4.1 27 74-100 26-52 (90)
118 1ich_A TNF-1, tumor necrosis f 39.7 70 0.0024 23.9 5.9 72 30-110 22-98 (112)
119 2lv7_A Calcium-binding protein 38.8 35 0.0012 23.7 3.9 51 48-110 28-78 (100)
120 3bq7_A Diacylglycerol kinase d 38.5 28 0.00095 23.7 3.3 24 84-107 9-32 (81)
121 2i6e_A Hypothetical protein; N 38.2 1.6E+02 0.0053 24.4 8.5 64 53-121 218-281 (301)
122 1sxj_D Activator 1 41 kDa subu 37.7 33 0.0011 27.8 4.1 67 30-97 191-263 (353)
123 2ovk_B RLC, myosin regulatory 37.4 91 0.0031 21.6 6.1 29 72-100 89-117 (153)
124 1rwy_A Parvalbumin alpha; EF-h 37.4 87 0.003 20.6 6.6 65 31-97 6-70 (109)
125 3nbx_X ATPase RAVA; AAA+ ATPas 37.1 2.4E+02 0.0081 25.5 11.0 59 31-91 209-280 (500)
126 2ovk_C Myosin catalytic light 35.7 89 0.003 21.9 5.8 30 71-100 88-117 (159)
127 3i5g_B Myosin regulatory light 35.5 1.2E+02 0.0042 22.0 6.7 53 45-109 5-57 (153)
128 3qrx_A Centrin; calcium-bindin 35.5 1.1E+02 0.0039 21.4 6.6 12 83-94 79-90 (169)
129 2qp9_X Vacuolar protein sortin 35.1 2E+02 0.0068 24.1 9.4 66 34-99 220-333 (355)
130 3sg6_A Gcamp2, myosin light ch 34.9 1.9E+02 0.0065 26.0 9.1 41 72-112 389-429 (450)
131 2joj_A Centrin protein; N-term 34.8 60 0.0021 20.0 4.3 25 76-100 15-39 (77)
132 2pk2_A Cyclin-T1, protein TAT; 34.5 7.5 0.00026 33.9 -0.3 14 30-43 151-164 (358)
133 3qrx_A Centrin; calcium-bindin 34.2 1.2E+02 0.0041 21.2 10.5 39 72-110 105-143 (169)
134 2mys_B Myosin; muscle protein, 34.2 89 0.003 22.0 5.6 23 77-99 34-56 (166)
135 1jr3_D DNA polymerase III, del 33.9 42 0.0014 27.7 4.3 65 31-95 142-207 (343)
136 1yfs_A Alanyl-tRNA synthetase; 33.8 1.9E+02 0.0066 26.6 8.9 46 77-122 371-423 (465)
137 2y1q_A CLPC N-domain, negative 33.8 53 0.0018 23.8 4.4 26 71-96 89-114 (150)
138 3i5g_C Myosin catalytic light 33.5 98 0.0034 22.7 5.9 30 71-100 88-117 (159)
139 2qz4_A Paraplegin; AAA+, SPG7, 33.4 12 0.00041 29.2 0.8 33 65-97 217-249 (262)
140 2kn2_A Calmodulin; S MAPK phos 33.3 95 0.0033 19.8 5.3 21 79-99 20-40 (92)
141 3pxg_A Negative regulator of g 33.0 82 0.0028 27.8 6.2 38 49-98 5-42 (468)
142 1ofh_A ATP-dependent HSL prote 32.8 50 0.0017 26.0 4.4 51 48-98 233-300 (310)
143 3bow_A Calpain-2 catalytic sub 32.5 2.6E+02 0.0087 26.2 9.8 30 71-100 608-637 (714)
144 1khy_A CLPB protein; alpha hel 32.1 51 0.0017 23.8 4.1 27 69-95 90-116 (148)
145 2ktg_A Calmodulin, putative; e 32.0 66 0.0023 20.3 4.2 26 75-100 21-46 (85)
146 1r6b_X CLPA protein; AAA+, N-t 31.5 1.4E+02 0.0049 27.6 7.8 65 33-97 351-433 (758)
147 3eie_A Vacuolar protein sortin 31.5 67 0.0023 26.4 5.1 17 83-99 284-300 (322)
148 2l8n_A Transcriptional repress 31.3 34 0.0012 22.8 2.7 32 30-65 20-51 (67)
149 2aao_A CDPK, calcium-dependent 31.2 59 0.002 22.9 4.2 70 31-100 60-131 (166)
150 1j7q_A CAVP, calcium vector pr 31.2 71 0.0024 20.3 4.3 25 76-100 22-46 (86)
151 1rro_A RAT oncomodulin; calciu 30.8 96 0.0033 20.4 5.1 67 30-98 5-71 (108)
152 2bl0_C Myosin regulatory light 30.4 1.3E+02 0.0043 20.4 9.2 29 72-100 83-111 (142)
153 1pva_A Parvalbumin; calcium bi 30.1 1.2E+02 0.0041 19.9 7.6 65 31-97 7-71 (110)
154 1jr3_A DNA polymerase III subu 29.9 52 0.0018 26.8 4.1 65 30-95 177-242 (373)
155 3h4s_E KCBP interacting Ca2+-b 29.6 71 0.0024 22.6 4.4 28 72-99 44-71 (135)
156 2aao_A CDPK, calcium-dependent 29.6 1.2E+02 0.0041 21.1 5.7 24 77-100 36-59 (166)
157 2ion_A PDCD4, programmed cell 29.5 60 0.0021 24.9 4.2 66 49-114 23-111 (152)
158 1s6j_A CDPK, calcium-dependent 29.2 67 0.0023 20.3 3.9 36 75-110 30-65 (87)
159 2zbk_B Type 2 DNA topoisomeras 29.0 27 0.00092 32.3 2.4 57 41-97 427-485 (530)
160 2d8c_A Phosphatidylcholine:cer 28.8 24 0.00081 25.5 1.6 23 84-106 19-41 (97)
161 3zri_A CLPB protein, CLPV; cha 28.7 66 0.0023 25.0 4.4 37 48-96 97-134 (171)
162 3dtp_E RLC, myosin regulatory 28.7 1.5E+02 0.0053 21.9 6.4 28 72-100 130-157 (196)
163 1h3o_A Transcription initiatio 28.5 91 0.0031 21.9 4.6 42 35-78 11-52 (75)
164 2i7a_A Calpain 13; calcium-dep 28.2 1.9E+02 0.0064 21.6 8.7 29 71-100 79-111 (174)
165 1kw4_A Polyhomeotic; SAM domai 28.2 44 0.0015 23.5 3.0 25 84-108 16-41 (89)
166 2pmy_A RAS and EF-hand domain- 27.4 1E+02 0.0035 20.1 4.7 28 73-100 32-59 (91)
167 2ahq_A Sigma-54, RNA polymeras 27.4 25 0.00086 24.6 1.5 40 76-119 29-68 (76)
168 2ovk_B RLC, myosin regulatory 27.2 1.1E+02 0.0038 21.2 5.0 36 76-111 24-59 (153)
169 2bl0_B Myosin regulatory light 26.8 88 0.003 21.2 4.4 30 71-100 79-108 (145)
170 2qac_A Myosin A tail domain in 26.7 1.5E+02 0.0053 20.2 8.7 41 72-112 88-128 (146)
171 3p8c_D Wiskott-aldrich syndrom 26.2 34 0.0012 29.6 2.4 17 106-122 162-178 (279)
172 2opo_A Polcalcin CHE A 3; calc 26.0 1E+02 0.0035 19.4 4.4 21 78-98 21-41 (86)
173 2chq_A Replication factor C sm 25.5 79 0.0027 24.9 4.4 63 31-95 161-224 (319)
174 3u0k_A Rcamp; fluorescent prot 25.3 3.9E+02 0.013 24.3 10.1 39 71-109 378-416 (440)
175 3li6_A Calcium-binding protein 25.3 1.1E+02 0.0038 18.0 5.5 26 71-96 39-64 (66)
176 3u0k_A Rcamp; fluorescent prot 25.0 1.7E+02 0.0058 26.7 6.9 54 44-109 290-343 (440)
177 1k9u_A Polcalcin PHL P 7; poll 25.0 1.1E+02 0.0037 18.9 4.3 12 83-94 53-64 (78)
178 3cuq_A Vacuolar-sorting protei 24.9 56 0.0019 27.4 3.5 15 83-97 113-127 (234)
179 1m45_A MLC1P, myosin light cha 24.4 1.3E+02 0.0044 20.5 4.9 29 72-100 87-115 (148)
180 3pxi_A Negative regulator of g 24.1 1.3E+02 0.0045 27.9 6.2 38 49-98 5-42 (758)
181 1ng6_A Hypothetical protein YQ 23.9 1.8E+02 0.0061 22.1 6.0 30 81-115 40-70 (148)
182 1u5t_A Appears to BE functiona 23.6 1E+02 0.0036 25.6 4.9 37 62-98 88-142 (233)
183 2nsz_A Programmed cell death p 23.2 96 0.0033 22.9 4.2 47 50-96 22-86 (129)
184 2kp7_A Crossover junction endo 22.8 2E+02 0.0069 20.1 5.7 53 65-117 18-85 (87)
185 3fwb_A Cell division control p 22.6 1.6E+02 0.0053 20.3 5.1 17 79-95 70-86 (161)
186 2qac_A Myosin A tail domain in 22.5 1.6E+02 0.0055 20.1 5.1 48 52-108 7-55 (146)
187 2mys_C Myosin; muscle protein, 22.4 1.8E+02 0.0063 19.5 10.1 29 72-100 89-117 (149)
188 1qx2_A Vitamin D-dependent cal 21.9 75 0.0026 19.4 2.9 22 78-99 16-38 (76)
189 3pxg_A Negative regulator of g 21.7 2.3E+02 0.0078 24.9 7.0 56 30-97 54-115 (468)
190 3j04_B Myosin regulatory light 21.6 92 0.0032 21.2 3.6 38 72-109 80-117 (143)
191 1s6i_A CDPK, calcium-dependent 21.5 2.3E+02 0.008 20.8 6.2 30 71-100 85-114 (188)
192 2lnz_A Ubiquitin-like protein 21.5 76 0.0026 21.8 2.9 27 20-46 18-44 (64)
193 3m6a_A ATP-dependent protease 21.2 1.3E+02 0.0044 27.2 5.4 53 47-99 280-343 (543)
194 3oq9_A Tumor necrosis factor r 21.2 2.2E+02 0.0075 20.0 6.9 71 31-111 10-85 (86)
195 1qv0_A Obelin, OBL; photoprote 21.1 2.3E+02 0.0079 20.2 6.0 29 72-100 117-145 (195)
196 3sjs_A URE3-BP sequence specif 21.1 2.8E+02 0.0095 21.1 10.2 67 29-100 82-149 (220)
197 3cs1_A Flagellar calcium-bindi 21.0 2.1E+02 0.0071 21.6 5.9 25 76-100 56-81 (219)
198 2gle_A Neurabin-1; SAM domain, 20.8 23 0.00078 23.5 0.2 22 85-106 7-28 (74)
199 4ds7_A Calmodulin, CAM; protei 20.7 1.5E+02 0.0052 19.9 4.6 14 81-94 60-73 (147)
200 3tdu_C Cullin-1, CUL-1; E2:E3, 20.5 1.3E+02 0.0044 20.8 4.1 17 81-97 41-57 (77)
201 3omb_A Extracellular solute-bi 20.4 1.1E+02 0.0038 26.6 4.7 63 50-114 471-534 (535)
202 3ox6_A Calcium-binding protein 20.3 2.1E+02 0.007 19.3 7.4 16 80-95 59-74 (153)
203 1iqp_A RFCS; clamp loader, ext 20.2 1.3E+02 0.0044 23.8 4.6 63 31-95 169-232 (327)
No 1
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.97 E-value=1.6e-30 Score=204.02 Aligned_cols=106 Identities=32% Similarity=0.504 Sum_probs=88.2
Q ss_pred CcccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcCCccch
Q 036580 24 PREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYV 103 (186)
Q Consensus 24 ~re~d~~LPkA~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~LgF~dyi 103 (186)
.+++|+.||+|+|+||||+++|++.+||+||+++|++||++||++||++|+++|.+++||||+++||++||+.++|.+|+
T Consensus 3 e~~~d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~fl 82 (128)
T 2byk_B 3 ERIEDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFV 82 (128)
T ss_dssp --------CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTTH
T ss_pred CccccccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCC
Q 036580 104 EPLKVYLQRFREMEGEKMARDKDAPP 129 (186)
Q Consensus 104 ~~Lk~~L~~~re~~~~K~~~kk~~~~ 129 (186)
.+|+.+|++||++++.|+..++..+.
T Consensus 83 ~~lk~~l~~yr~~~~~kk~~~~~~~~ 108 (128)
T 2byk_B 83 PSLTQDLEVYRKVVKEKKESKASKKD 108 (128)
T ss_dssp HHHHHHHHHHHHHHTTC---------
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccc
Confidence 99999999999999988876555443
No 2
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.96 E-value=5.5e-30 Score=189.71 Aligned_cols=92 Identities=73% Similarity=1.177 Sum_probs=85.9
Q ss_pred CcccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcCCccch
Q 036580 24 PREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYV 103 (186)
Q Consensus 24 ~re~d~~LPkA~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~LgF~dyi 103 (186)
++++|+.||+++|+||||+++|++.+||+||+++|++||++||.+|+.+|+++|++++||||+++||++||++|||.+|+
T Consensus 2 ~~~~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F~~~i 81 (93)
T 1n1j_A 2 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYV 81 (93)
T ss_dssp -----CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTCGGGH
T ss_pred CCcccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHhhH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 036580 104 EPLKVYLQRFRE 115 (186)
Q Consensus 104 ~~Lk~~L~~~re 115 (186)
.+++.+|++||+
T Consensus 82 ~~~~~~l~~~r~ 93 (93)
T 1n1j_A 82 EPLKLYLQKFRE 93 (93)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999999985
No 3
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.96 E-value=1.2e-29 Score=209.29 Aligned_cols=98 Identities=30% Similarity=0.635 Sum_probs=92.0
Q ss_pred CcccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcCCccch
Q 036580 24 PREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYV 103 (186)
Q Consensus 24 ~re~d~~LPkA~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~LgF~dyi 103 (186)
..++|+.||+++|.||||+++| +.+||+||+++|++||++||+|||++|+++|.+++||||+++||++||++|||++|+
T Consensus 9 ~~~eD~~LP~A~V~RImK~alp-~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~~fv 87 (179)
T 1jfi_B 9 GNDDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYI 87 (179)
T ss_dssp ---CCCCCCHHHHHHHHHHHST-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTGGGH
T ss_pred CchhhhhcCHHHHHHHHHHhCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChHHHH
Confidence 5678899999999999999999 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 036580 104 EPLKVYLQRFREMEGEKMA 122 (186)
Q Consensus 104 ~~Lk~~L~~~re~~~~K~~ 122 (186)
++|+.+|++||++++.|+.
T Consensus 88 ~~lk~~L~~yre~~~~kkr 106 (179)
T 1jfi_B 88 SEVKEVLQECKTVALKRRK 106 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcc
Confidence 9999999999998877644
No 4
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.86 E-value=9.8e-22 Score=140.97 Aligned_cols=67 Identities=21% Similarity=0.302 Sum_probs=64.1
Q ss_pred cCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 036580 29 RFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTT 96 (186)
Q Consensus 29 ~~LPkA~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~ 96 (186)
..||+|+|.||||+.+| +.+||+||+++|++||++||++|+++|++.|.+++||||+++||++|++.
T Consensus 3 ~~LP~A~V~rI~K~~~p-~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ 69 (76)
T 3b0c_W 3 RTVPRGTLRKIIKKHKP-HLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKV 69 (76)
T ss_dssp -CCCHHHHHHHHHHHCT-TCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred CcccccHHHHHHHHhCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 57999999999999999 68999999999999999999999999999999999999999999999876
No 5
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.83 E-value=7.1e-21 Score=153.75 Aligned_cols=74 Identities=24% Similarity=0.356 Sum_probs=71.1
Q ss_pred CCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcCCccchH
Q 036580 30 FLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVE 104 (186)
Q Consensus 30 ~LPkA~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~LgF~dyi~ 104 (186)
.||+++|.||||+.+|. .|||+||+++|++|+++|+.+|+++|+++|+|+|||||+++||++||.+|||++|++
T Consensus 4 ~LP~a~V~Riik~~lg~-~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~v~d 77 (154)
T 1f1e_A 4 ELPKAAIERIFRQGIGE-RRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVED 77 (154)
T ss_dssp CCCHHHHHHHHHTTSTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTTSTT
T ss_pred cCCccHHHHHHHhcCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccccCCc
Confidence 69999999999999985 999999999999999999999999999999999999999999999999999998743
No 6
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.82 E-value=3.2e-20 Score=142.37 Aligned_cols=90 Identities=19% Similarity=0.345 Sum_probs=79.6
Q ss_pred ccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcCCccchHH
Q 036580 26 EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEP 105 (186)
Q Consensus 26 e~d~~LPkA~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~LgF~dyi~~ 105 (186)
.+|..||+++|+||||... ..+||+|+.++|++|+++|+..|+.+|..+|+|+|||||+++||++||+++++..|..+
T Consensus 3 ~~d~~lP~a~I~Ri~r~~g--~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~~~~ 80 (111)
T 3b0c_T 3 TREPEIASSLIKQIFSHYV--KTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKMP 80 (111)
T ss_dssp -------CHHHHHHHHHHH--CSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBTTBC
T ss_pred CCCCCCCHHHHHHHHHHCC--CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCcccccc
Confidence 3567899999999999995 78999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 036580 106 LKVYLQRFREME 117 (186)
Q Consensus 106 Lk~~L~~~re~~ 117 (186)
++.++++|...+
T Consensus 81 l~~l~~~~lp~E 92 (111)
T 3b0c_T 81 LHVLVERHLPLE 92 (111)
T ss_dssp HHHHHHHHSCHH
T ss_pred HHHHHHHhCcHH
Confidence 999999994443
No 7
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.81 E-value=4.3e-20 Score=128.98 Aligned_cols=66 Identities=30% Similarity=0.436 Sum_probs=63.5
Q ss_pred CCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHc
Q 036580 30 FLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTL 97 (186)
Q Consensus 30 ~LPkA~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~L 97 (186)
.||+++|.||||+. ++.+||+||+++|++|+++||.+|+.+|+.+|.|++||||+++||.+|++.|
T Consensus 2 ~lP~a~v~Ri~k~~--~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 2 ELPIAPIGRIIKNA--GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp CSCHHHHHHHHHHT--TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred CCCccHHHHHHhcC--CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 49999999999999 4799999999999999999999999999999999999999999999999876
No 8
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.79 E-value=3.2e-20 Score=147.63 Aligned_cols=98 Identities=20% Similarity=0.344 Sum_probs=63.0
Q ss_pred cccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCccCHHHHHHHHHH---cCCc
Q 036580 25 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKC-QREKRKTINGDDLLWAMTT---LGFE 100 (186)
Q Consensus 25 re~d~~LPkA~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a-~~~kRKTIt~eDVl~AL~~---LgF~ 100 (186)
...++.||+++|+||||.. |+..+||++|+.+|++||++||.+|+..|+..| +..+||||+++||.+|+.. |+|.
T Consensus 14 ~~~~~~LPlaRIKrIMK~d-pdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL 92 (140)
T 2byk_A 14 PTAETFLPLSRVRTIMKSS-MDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFL 92 (140)
T ss_dssp ---------------CCSS-SSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGG
T ss_pred cccCCCCCHHHHHHHHhcC-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhH
Confidence 3466789999999999998 888999999999999999999999999999999 9999999999999999985 5555
Q ss_pred cchHHHHHHHHHHHHHHHhhhhc
Q 036580 101 EYVEPLKVYLQRFREMEGEKMAR 123 (186)
Q Consensus 101 dyi~~Lk~~L~~~re~~~~K~~~ 123 (186)
.++-|.+.++.+|+++.+.++..
T Consensus 93 ~divP~ki~l~~~~~~~~~~~~~ 115 (140)
T 2byk_A 93 LQIVPQKIRVHQFQEMLRLNRSA 115 (140)
T ss_dssp TTTSCSCC---------------
T ss_pred hccccchhhHHHHHHHHHhcccc
Confidence 55669999999999988776554
No 9
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.73 E-value=5e-18 Score=131.26 Aligned_cols=77 Identities=23% Similarity=0.317 Sum_probs=70.3
Q ss_pred ccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcCCccch
Q 036580 26 EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYV 103 (186)
Q Consensus 26 e~d~~LPkA~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~LgF~dyi 103 (186)
.....||+++|+||||.. |+..+||+||+.+|++|+|+||.+|+.+|+..|+.++||||+++||..|++..+..+|+
T Consensus 37 ~k~~~lPvaRIkrImK~d-~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL 113 (119)
T 4g92_C 37 YKIHQLPLARIKKVMKAD-PEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFL 113 (119)
T ss_dssp SSCCSSCHHHHHHHHHTS-TTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGG
T ss_pred cccCCCCHHHHHHHHhhC-CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhHH
Confidence 445679999999999987 88999999999999999999999999999999999999999999999999876655554
No 10
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.73 E-value=7.4e-18 Score=127.50 Aligned_cols=76 Identities=21% Similarity=0.312 Sum_probs=71.2
Q ss_pred cccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcCCccc
Q 036580 25 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEY 102 (186)
Q Consensus 25 re~d~~LPkA~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~LgF~dy 102 (186)
+..+..||+++|+||+|+.. ..+||+|+.++|++|+++|+..|+.+|.++|+|++||||+++||.+||+.++|..|
T Consensus 23 r~~i~~ip~~~I~Rlar~~G--v~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~~lY 98 (102)
T 1id3_B 23 RDNIQGITKPAIRRLARRGG--VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLY 98 (102)
T ss_dssp -CCGGGSCHHHHHHHHHHTT--CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCCEE
T ss_pred HhccCCCCHHHHHHHHHHcC--chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 56667899999999999986 58999999999999999999999999999999999999999999999999998766
No 11
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.73 E-value=4.8e-18 Score=124.06 Aligned_cols=76 Identities=21% Similarity=0.293 Sum_probs=71.4
Q ss_pred cccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcCCccc
Q 036580 25 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEY 102 (186)
Q Consensus 25 re~d~~LPkA~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~LgF~dy 102 (186)
+.....||+++|+||+|+.. ..+||+|+.++|++|+++|+..|+.+|.++|+|++||||+++||.+||+.+++..|
T Consensus 5 r~~~~~ip~~~I~Riar~~G--v~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~~lY 80 (84)
T 2hue_C 5 RDNIQGITKPAIRRLARRGG--VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 80 (84)
T ss_dssp GGGCCSSCHHHHHHHHHHTT--CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCEEEE
T ss_pred cccCCCCCHHHHHHHHHHcC--chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 55667899999999999986 58999999999999999999999999999999999999999999999999998766
No 12
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.73 E-value=1.4e-17 Score=134.46 Aligned_cols=75 Identities=24% Similarity=0.281 Sum_probs=69.9
Q ss_pred CCCCCcccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 036580 20 RELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTT 96 (186)
Q Consensus 20 ~e~~~re~d~~LPkA~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~ 96 (186)
-|..+..+++.||+++|.||||+. ...|||+||+++|++|+++|+.+|+.+|+++|+|++||||+++||++||+.
T Consensus 72 ~~~v~d~~~l~lP~a~V~Ri~k~~--g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~ 146 (154)
T 1f1e_A 72 VEGVEDYDGELFGRATVRRILKRA--GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITY 146 (154)
T ss_dssp CTTSTTCCSCCCCHHHHHHHHHHT--TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cccCCccccccCCccHHHHHHHHc--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 344567788999999999999999 378999999999999999999999999999999999999999999999986
No 13
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.72 E-value=7.8e-18 Score=125.73 Aligned_cols=79 Identities=24% Similarity=0.277 Sum_probs=69.6
Q ss_pred cccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcCCccchH
Q 036580 25 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVE 104 (186)
Q Consensus 25 re~d~~LPkA~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~LgF~dyi~ 104 (186)
...+..||+++|+||||.. |+..+||+||..+|++|+|+||.+|+.+|+..|++++||||+++||..|++..++.+|+.
T Consensus 14 ~~~~~~lP~arIkrImK~~-~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL~ 92 (97)
T 1n1j_B 14 DFRVQELPLARIKKIMKLD-EDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLI 92 (97)
T ss_dssp ------CCHHHHHHHHTTS-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred CcCCCcCCHHHHHHHHccC-ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHHH
Confidence 3456689999999999998 777899999999999999999999999999999999999999999999999888887764
No 14
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.69 E-value=7.2e-17 Score=121.78 Aligned_cols=77 Identities=21% Similarity=0.280 Sum_probs=71.8
Q ss_pred CcccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcCCccc
Q 036580 24 PREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEY 102 (186)
Q Consensus 24 ~re~d~~LPkA~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~LgF~dy 102 (186)
.++.+..||+++|.||+|... ..+||.|+.+.|++|+++|+..|+.+|..+|+|++||||+++||.+||+.++|..|
T Consensus 23 ~r~~~~gip~~~I~Rlar~~G--~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~~lY 99 (103)
T 1tzy_D 23 LRDNIQGITKPAIRRLARRGG--VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99 (103)
T ss_dssp CCCGGGGSCHHHHHHHHHHTT--CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCEEE
T ss_pred hhhhcccCCHHHHHHHHHHcC--ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCCCCc
Confidence 456677799999999999997 47999999999999999999999999999999999999999999999999998765
No 15
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.68 E-value=9e-17 Score=121.36 Aligned_cols=76 Identities=22% Similarity=0.320 Sum_probs=64.5
Q ss_pred cccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcCCccc
Q 036580 25 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEY 102 (186)
Q Consensus 25 re~d~~LPkA~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~LgF~dy 102 (186)
++.+..||+++|.||+|... ..+||.||.+.|++++++|+..|+.+|..+|+|++||||+++||.+||+.+++..|
T Consensus 24 r~~~~gip~~~I~Rlar~~G--~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~~lY 99 (103)
T 2yfw_B 24 RDNIQGITKPAIRRLARRGG--VKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99 (103)
T ss_dssp ------CCHHHHHHHHHHTT--CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC----
T ss_pred hhhhccCCHHHHHHHHHHcC--ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCc
Confidence 55666799999999999997 47999999999999999999999999999999999999999999999999998655
No 16
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.67 E-value=1.4e-16 Score=112.14 Aligned_cols=64 Identities=28% Similarity=0.430 Sum_probs=61.5
Q ss_pred CCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Q 036580 30 FLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMT 95 (186)
Q Consensus 30 ~LPkA~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~ 95 (186)
.||+++|.||+|+.. ..+||++++++|++|++.|+..|+.+|+.+|+|+|||||+++||..|++
T Consensus 6 ~lp~a~v~Rl~r~~g--~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 6 ELPIAPVDRLIRKAG--AERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CSCHHHHHHHHHHTT--CSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred cCChHHHHHHHHHcC--cceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 599999999999974 7899999999999999999999999999999999999999999999985
No 17
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.55 E-value=3.5e-15 Score=111.69 Aligned_cols=77 Identities=16% Similarity=0.189 Sum_probs=60.2
Q ss_pred cccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcCCccchH
Q 036580 27 QDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVE 104 (186)
Q Consensus 27 ~d~~LPkA~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~LgF~dyi~ 104 (186)
....||+++|+||||.. |+..+||.+|..+|.+++|.|+.+|+..|+..|++.+||||+++||..|++.-+..+|+.
T Consensus 8 ~~~~fPvaRIkrimK~~-~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL~ 84 (98)
T 1jfi_A 8 YNARFPPARIKKIMQTD-EEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAANK 84 (98)
T ss_dssp --CCCCHHHHHHHHTTS-TTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC---------
T ss_pred cCCCCChHHHHHHHHcC-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHHH
Confidence 34579999999999986 677899999999999999999999999999999999999999999999998765555544
No 18
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=99.36 E-value=2.3e-12 Score=93.46 Aligned_cols=71 Identities=15% Similarity=0.186 Sum_probs=64.3
Q ss_pred ccCCchhHHHHHHHhhCC---CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcC
Q 036580 28 DRFLPIANVSRIMKKALP---ANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLG 98 (186)
Q Consensus 28 d~~LPkA~V~RImK~alP---~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~Lg 98 (186)
++.||++++.||+|+... .+.|++.+|..+||+++|.|+..|...|+..|.|+||+||+++||..|.+.-|
T Consensus 1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg 74 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRG 74 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhC
Confidence 468999999999999942 36899999999999999999999999999999999999999999999986543
No 19
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=99.31 E-value=4.1e-12 Score=96.11 Aligned_cols=72 Identities=18% Similarity=0.168 Sum_probs=60.5
Q ss_pred CcccccCCchhHHHHHHHhhCCC------CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Q 036580 24 PREQDRFLPIANVSRIMKKALPA------NAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMT 95 (186)
Q Consensus 24 ~re~d~~LPkA~V~RImK~alP~------~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~ 95 (186)
.+.+++.||++++.||+|+...+ +.|++.+|+.+||+++|.|+..|...|+..|.|+||+||+++||..|.+
T Consensus 21 Qkst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 21 QRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp -------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 46788899999999999999732 6899999999999999999999999999999999999999999998863
No 20
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=99.29 E-value=8.8e-12 Score=91.36 Aligned_cols=69 Identities=16% Similarity=0.104 Sum_probs=63.2
Q ss_pred cCCchhHHHHHHHhhCC-----CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHc
Q 036580 29 RFLPIANVSRIMKKALP-----ANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTL 97 (186)
Q Consensus 29 ~~LPkA~V~RImK~alP-----~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~L 97 (186)
+.||++++.||+|+... .+.|++.+|..+||+++|.|+..|...|+..|.|+||+||+++||..|..--
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rir 75 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIR 75 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHc
Confidence 46999999999999872 2579999999999999999999999999999999999999999999887643
No 21
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=99.25 E-value=1.1e-11 Score=100.37 Aligned_cols=72 Identities=15% Similarity=0.123 Sum_probs=64.4
Q ss_pred cccccCCchhHHHHHHHhhCCC-----CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 036580 25 REQDRFLPIANVSRIMKKALPA-----NAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTT 96 (186)
Q Consensus 25 re~d~~LPkA~V~RImK~alP~-----~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~ 96 (186)
+.+++.||++.+.||||+...+ +.+|+.+|+++||+++|.|+..|..+|+.+|.|+||+||+++||..|+..
T Consensus 72 kSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrI 148 (156)
T 3r45_A 72 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI 148 (156)
T ss_dssp ---CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHH
Confidence 5788999999999999998732 57999999999999999999999999999999999999999999988754
No 22
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=99.25 E-value=1.2e-11 Score=98.48 Aligned_cols=75 Identities=16% Similarity=0.149 Sum_probs=65.8
Q ss_pred cccccCCchhHHHHHHHhhCC-----CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcCC
Q 036580 25 REQDRFLPIANVSRIMKKALP-----ANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGF 99 (186)
Q Consensus 25 re~d~~LPkA~V~RImK~alP-----~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~LgF 99 (186)
+.+++.||++.+.||+|+... .+.+++.+|+++||+++|.|+..|..+|+.+|.|+||+||+++||..|..--|.
T Consensus 56 kst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrirg~ 135 (140)
T 3nqu_A 56 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 135 (140)
T ss_dssp ---CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC-
T ss_pred cccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhccc
Confidence 678899999999999999872 257999999999999999999999999999999999999999999999875443
No 23
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=99.22 E-value=2.6e-11 Score=96.22 Aligned_cols=74 Identities=15% Similarity=0.197 Sum_probs=67.4
Q ss_pred cccccCCchhHHHHHHHhhCC---CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcC
Q 036580 25 REQDRFLPIANVSRIMKKALP---ANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLG 98 (186)
Q Consensus 25 re~d~~LPkA~V~RImK~alP---~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~Lg 98 (186)
+.+++.||++++.||+|+... .+.+|+.+|+++||+++|.|+..|..+++.+|.|++|+||+++||..|...-|
T Consensus 57 kst~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg 133 (136)
T 1tzy_C 57 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133 (136)
T ss_dssp HCCSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHT
T ss_pred cchhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhC
Confidence 567889999999999999942 36899999999999999999999999999999999999999999999876543
No 24
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.13 E-value=2e-10 Score=81.78 Aligned_cols=64 Identities=17% Similarity=0.182 Sum_probs=61.3
Q ss_pred CCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Q 036580 30 FLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMT 95 (186)
Q Consensus 30 ~LPkA~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~ 95 (186)
.||+++|++|+++.. ..+||.|+...|.+-++..+..|+.+|.++++|.|||||+.+||-.||+
T Consensus 6 ~lp~~~v~~iaes~G--i~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 6 SISAESMKVIAESIG--VGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCHHHHHHHHHHTT--CCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred cCCHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 599999999999996 5699999999999999999999999999999999999999999999984
No 25
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=99.01 E-value=8.7e-10 Score=87.84 Aligned_cols=77 Identities=13% Similarity=0.123 Sum_probs=64.8
Q ss_pred HHHHHHHhhCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcCCccchHHHHHHHHHH
Q 036580 35 NVSRIMKKALP-ANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRF 113 (186)
Q Consensus 35 ~V~RImK~alP-~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~LgF~dyi~~Lk~~L~~~ 113 (186)
+|.||+++... .++.||+++..+|.+.+..|+..|+.++..+|+|+|||||+.+||..++++. +.|..+|..|
T Consensus 24 ~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn------~~L~~~L~~~ 97 (140)
T 3vh5_A 24 TTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRS------NSLLKYITQK 97 (140)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTS------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC------HHHHHHHHHH
Confidence 57788888753 2578999999999999999999999999999999999999999999999873 4555666666
Q ss_pred HHHH
Q 036580 114 REME 117 (186)
Q Consensus 114 re~~ 117 (186)
.+..
T Consensus 98 ~~el 101 (140)
T 3vh5_A 98 SDEL 101 (140)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 26
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.99 E-value=1e-09 Score=84.64 Aligned_cols=77 Identities=17% Similarity=0.142 Sum_probs=67.1
Q ss_pred HHHHHHHhhCCC-CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcCCccchHHHHHHHHHH
Q 036580 35 NVSRIMKKALPA-NAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRF 113 (186)
Q Consensus 35 ~V~RImK~alP~-~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~LgF~dyi~~Lk~~L~~~ 113 (186)
+|.||+++.... ++.||++++.+|.+.+..|+..|+.++..+|+|+|||||+.+||..++++ -+.|..+|.+|
T Consensus 32 ~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr------~~~L~~~l~~~ 105 (113)
T 4dra_A 32 TVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARR------SNSLLKYITDK 105 (113)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHh------CHHHHHHHHHH
Confidence 578999988632 45699999999999999999999999999999999999999999999987 35677777777
Q ss_pred HHHH
Q 036580 114 REME 117 (186)
Q Consensus 114 re~~ 117 (186)
.+..
T Consensus 106 ~~el 109 (113)
T 4dra_A 106 SEEI 109 (113)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 27
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.96 E-value=2.2e-09 Score=82.03 Aligned_cols=77 Identities=13% Similarity=0.113 Sum_probs=65.1
Q ss_pred HHHHHHHhhCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcCCccchHHHHHHHHHH
Q 036580 35 NVSRIMKKALP-ANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRF 113 (186)
Q Consensus 35 ~V~RImK~alP-~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~LgF~dyi~~Lk~~L~~~ 113 (186)
+|.||+++... ...+||+++..+|.+.+..|+..|+.+|..+|+|+|||||+.+||..|+++. +.|...|.+|
T Consensus 24 ~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn------~~l~~~l~~~ 97 (107)
T 3b0b_B 24 TTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRS------NSLLKYITQK 97 (107)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC------HHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhC------HHHHHHHHHH
Confidence 48899998862 2369999999999999999999999999999999999999999999999873 4555666665
Q ss_pred HHHH
Q 036580 114 REME 117 (186)
Q Consensus 114 re~~ 117 (186)
.+..
T Consensus 98 ~~el 101 (107)
T 3b0b_B 98 SDEL 101 (107)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 28
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=98.90 E-value=3.2e-09 Score=82.76 Aligned_cols=56 Identities=25% Similarity=0.366 Sum_probs=49.7
Q ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcCCccc
Q 036580 47 NAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEY 102 (186)
Q Consensus 47 ~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~LgF~dy 102 (186)
..|||.|+.+.+.++.++|+..|..+|..+|+|++||||+++||..||++.|-.-|
T Consensus 62 vkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~~ly 117 (121)
T 2ly8_A 62 SKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLY 117 (121)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTCGGG
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCCcCC
Confidence 46788888888888889999999999999999999999999999999999886544
No 29
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.88 E-value=4.7e-09 Score=77.94 Aligned_cols=62 Identities=13% Similarity=0.167 Sum_probs=58.0
Q ss_pred HHHHHHHhhCCCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 036580 35 NVSRIMKKALPAN-AKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTT 96 (186)
Q Consensus 35 ~V~RImK~alP~~-~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~ 96 (186)
+|.+|+.+.++.. +.||+++..+|.+.+..++..|+.++..+|+|+|||||+.+||..++++
T Consensus 17 ~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 17 RVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp HHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 5789999998754 7899999999999999999999999999999999999999999999876
No 30
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.87 E-value=1.1e-08 Score=72.45 Aligned_cols=61 Identities=16% Similarity=0.205 Sum_probs=57.4
Q ss_pred hHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 036580 34 ANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTT 96 (186)
Q Consensus 34 A~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~ 96 (186)
..|.||+|+.. ..+++.++...|.+.++.++..|+.+|..+|+|+|||||+.+||..|++.
T Consensus 5 ~~i~~iLk~~G--~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 5 QVIMSILKELN--VQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHHTT--CCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHCC--CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 36899999986 67999999999999999999999999999999999999999999999874
No 31
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=98.85 E-value=9.7e-09 Score=79.90 Aligned_cols=69 Identities=14% Similarity=0.209 Sum_probs=63.7
Q ss_pred cccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 036580 27 QDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTT 96 (186)
Q Consensus 27 ~d~~LPkA~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~ 96 (186)
-.+.||.++|.|+||+.-- ..||+.+|...|..++|.|+.+|...|...|.+.+|++|+++||..|++.
T Consensus 20 agL~fPV~ri~R~Lk~~~~-a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 88 (123)
T 2nqb_C 20 AGLQFPVGRIHRLLRKGNY-AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 88 (123)
T ss_dssp HTCSSCHHHHHHHHHHTTS-CSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CCeeccHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhc
Confidence 4678999999999999832 46999999999999999999999999999999999999999999999974
No 32
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=98.83 E-value=1.4e-08 Score=79.56 Aligned_cols=70 Identities=16% Similarity=0.168 Sum_probs=64.4
Q ss_pred cccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 036580 27 QDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTT 96 (186)
Q Consensus 27 ~d~~LPkA~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~ 96 (186)
-.+.||.++|.|+||+......||+.+|...|..++|.|+.+|...|...|.+.+|++|+++||..|++.
T Consensus 24 agLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 24 AGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp HTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred CCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 4678999999999999863335999999999999999999999999999999999999999999999975
No 33
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=98.81 E-value=1.7e-08 Score=78.19 Aligned_cols=69 Identities=16% Similarity=0.264 Sum_probs=64.0
Q ss_pred cccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 036580 27 QDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTT 96 (186)
Q Consensus 27 ~d~~LPkA~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~ 96 (186)
..+.||.++|.|+||+.-- ..||+.+|...|..++|.|+.+|...|...|.+.+|++|+++||..|++.
T Consensus 19 agLqfPV~ri~R~Lk~~~~-a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n 87 (120)
T 2f8n_G 19 AGVIFPVGRMLRYIKKGHP-KYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN 87 (120)
T ss_dssp HTCSSCHHHHHHHHHHHSS-SCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred cCccCChHHHHHHHHcCcc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 4678999999999999853 56999999999999999999999999999999999999999999999974
No 34
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=98.80 E-value=1.9e-08 Score=78.90 Aligned_cols=69 Identities=14% Similarity=0.211 Sum_probs=63.8
Q ss_pred cccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 036580 27 QDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTT 96 (186)
Q Consensus 27 ~d~~LPkA~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~ 96 (186)
..+.||.++|.|+||+.-- ..||+.+|...|..++|.|+.+|...|...|.+.+|++|+++||..|++.
T Consensus 22 agLqfPV~rI~R~Lk~~~~-a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 90 (129)
T 1tzy_A 22 AGLQFPVGRVHRLLRKGNY-AERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (129)
T ss_dssp HTCSSCHHHHHHHHHHTTS-SSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CceeccHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 4678999999999999732 46999999999999999999999999999999999999999999999974
No 35
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.79 E-value=1.6e-08 Score=79.39 Aligned_cols=70 Identities=14% Similarity=0.219 Sum_probs=64.2
Q ss_pred ccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 036580 26 EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTT 96 (186)
Q Consensus 26 e~d~~LPkA~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~ 96 (186)
.-.+.||.++|.|+||+.-- ..||+.+|...|..++|.|+.+|...|...|.+.+|++|+++||..|++.
T Consensus 21 ragLqfPV~rI~R~Lk~~~~-a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~n 90 (131)
T 1id3_C 21 KAGLTFPVGRVHRLLRRGNY-AQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (131)
T ss_dssp GGTCSSCHHHHHHHHHTTCS-CSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred cCCeecCHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 35678999999999999732 46999999999999999999999999999999999999999999999974
No 36
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=98.77 E-value=2.1e-08 Score=80.54 Aligned_cols=69 Identities=14% Similarity=0.217 Sum_probs=63.8
Q ss_pred cccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 036580 27 QDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTT 96 (186)
Q Consensus 27 ~d~~LPkA~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~ 96 (186)
..+.||.++|.|+||+.-- ..||+.+|...|..++|.|+.+|...|...|.+.+|++|+++||..|++.
T Consensus 41 agLqFPVgrI~R~LK~~~~-a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n 109 (149)
T 2f8n_K 41 AGLQFPVGRVHRLLRKGNY-SERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 109 (149)
T ss_dssp HTCSSCHHHHHHHHHHTTS-CSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CCeeccHHHHHHHHHcccc-ccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc
Confidence 4678999999999999842 46999999999999999999999999999999999999999999999974
No 37
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.74 E-value=3.2e-09 Score=90.69 Aligned_cols=61 Identities=23% Similarity=0.256 Sum_probs=56.1
Q ss_pred HHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcC
Q 036580 36 VSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLG 98 (186)
Q Consensus 36 V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~Lg 98 (186)
+.||+|+.. ..|||.++.+.+.+..+.|+..|+.+|..+|+|++||||+++||..||+.+|
T Consensus 167 ~~RlaRrgG--VkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~g 227 (235)
T 2l5a_A 167 DEEDGDKGG--VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 227 (235)
T ss_dssp CCTTSCCTT--CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred HHHHhhcCC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcC
Confidence 347777765 7899999999999999999999999999999999999999999999999764
No 38
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.60 E-value=5.9e-08 Score=82.93 Aligned_cols=71 Identities=17% Similarity=0.162 Sum_probs=63.1
Q ss_pred ccCCchhHHHHHHHhhCCC------CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcC
Q 036580 28 DRFLPIANVSRIMKKALPA------NAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLG 98 (186)
Q Consensus 28 d~~LPkA~V~RImK~alP~------~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~Lg 98 (186)
.+.||+.++.|++|+...+ +.|++.+|+.+||+++|.|+..|...++-+|.|+||.||++.|+..|..--|
T Consensus 9 ~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg 85 (235)
T 2l5a_A 9 KLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRG 85 (235)
T ss_dssp --CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSC
T ss_pred cccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhh
Confidence 4679999999999998642 5799999999999999999999999999999999999999999999876443
No 39
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.60 E-value=1.3e-07 Score=77.98 Aligned_cols=70 Identities=16% Similarity=0.204 Sum_probs=63.7
Q ss_pred cccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 036580 27 QDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTT 96 (186)
Q Consensus 27 ~d~~LPkA~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~ 96 (186)
..+.||.++|.|+||+.-....||+.+|...|..++|.|+.+|...|...|.+.+|+||+++||..|++.
T Consensus 102 agl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~n 171 (192)
T 2jss_A 102 AGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRG 171 (192)
T ss_dssp SSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHT
T ss_pred CCCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Confidence 3578999999999999742235999999999999999999999999999999999999999999999974
No 40
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=98.36 E-value=1.4e-06 Score=68.05 Aligned_cols=63 Identities=24% Similarity=0.344 Sum_probs=59.0
Q ss_pred hHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHc
Q 036580 34 ANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTL 97 (186)
Q Consensus 34 A~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~L 97 (186)
.-|+|++|++-| +..||.+|...|+..+..+.+.|+.+|...|..++|+||+..||..|++-|
T Consensus 37 ~YIyKVLKQVhp-d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 99 (123)
T 2nqb_D 37 IYIYTVLKQVHP-DTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLL 99 (123)
T ss_dssp HHHHHHHHHHCT-TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence 568999999988 588999999999999999999999999999999999999999999998653
No 41
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=98.32 E-value=1.9e-06 Score=67.58 Aligned_cols=63 Identities=27% Similarity=0.388 Sum_probs=58.9
Q ss_pred hHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHc
Q 036580 34 ANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTL 97 (186)
Q Consensus 34 A~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~L 97 (186)
.-|+|++|++-| +..||.+|...|+..+..+...|+.+|...+..++|+||+..||..|++-|
T Consensus 40 ~YIyKVLKQVhp-d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 102 (126)
T 1tzy_B 40 IYVYKVLKQVHP-DTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL 102 (126)
T ss_dssp HHHHHHHHHHCT-TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 369999999988 478999999999999999999999999999999999999999999999653
No 42
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=98.29 E-value=4.8e-06 Score=60.04 Aligned_cols=66 Identities=18% Similarity=0.337 Sum_probs=62.7
Q ss_pred CCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 036580 30 FLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTT 96 (186)
Q Consensus 30 ~LPkA~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~ 96 (186)
.|++..+..++|+.-| ...+..|+.++|.+.|.+||..++..|...|+|.+-.||...||...|++
T Consensus 5 vl~k~~L~~Lv~~idp-~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDP-NEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp SSCHHHHHHHHHHHCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 4899999999999976 68999999999999999999999999999999999999999999999985
No 43
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=98.10 E-value=2.2e-05 Score=57.53 Aligned_cols=69 Identities=19% Similarity=0.184 Sum_probs=62.3
Q ss_pred ccCCchhHHHHHHHhhCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 036580 28 DRFLPIANVSRIMKKALP-ANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTT 96 (186)
Q Consensus 28 d~~LPkA~V~RImK~alP-~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~ 96 (186)
+..||..+|.||++.... +..||++||..++.+....||..-...|...++.++..+|..+|+.+.+-.
T Consensus 10 ~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~pQ 79 (84)
T 4dra_E 10 GSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQ 79 (84)
T ss_dssp -CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 446999999999998885 578999999999999999999999999999999888899999999987754
No 44
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.05 E-value=1.7e-05 Score=65.33 Aligned_cols=62 Identities=19% Similarity=0.339 Sum_probs=58.3
Q ss_pred hHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 036580 34 ANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTT 96 (186)
Q Consensus 34 A~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~ 96 (186)
.-|+|++|+.-| +..||.+|...|...+..++..|+.+|...+..++|+||+..||..|++.
T Consensus 7 ~yi~kvLkqv~p-~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl 68 (192)
T 2jss_A 7 SYIYKVLKQTHP-DTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRL 68 (192)
T ss_dssp HHHHHHHHHHCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHH
T ss_pred HHHHHHHcccCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 468999999988 47899999999999999999999999999999999999999999999974
No 45
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=98.03 E-value=3.3e-05 Score=56.19 Aligned_cols=69 Identities=13% Similarity=0.208 Sum_probs=62.4
Q ss_pred ccCCchhHHHHHHHhhCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 036580 28 DRFLPIANVSRIMKKALP-ANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTT 96 (186)
Q Consensus 28 d~~LPkA~V~RImK~alP-~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~ 96 (186)
+-.||...|.||++.... +..||++||..++.+....||..-...|...++.++-..|..+|+.+.+-.
T Consensus 6 ~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~pq 75 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQ 75 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHHH
Confidence 457999999999999886 578999999999999999999999999999998889999999999987654
No 46
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=97.92 E-value=5.9e-05 Score=55.60 Aligned_cols=67 Identities=18% Similarity=0.268 Sum_probs=61.2
Q ss_pred CCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCccCHHHHHHHHHHcC
Q 036580 30 FLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREK-RKTINGDDLLWAMTTLG 98 (186)
Q Consensus 30 ~LPkA~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~k-RKTIt~eDVl~AL~~Lg 98 (186)
.||++.|+|||...+ +..|+.+...+|.-.+.+||-.|..+|.+++++.+ +.-|.+.||-.|.++|.
T Consensus 16 ~f~k~~vKrl~~~~~--~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 16 AFPKAAIKRLIQSIT--GTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK 83 (89)
T ss_dssp CCCHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHc--CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 599999999999998 67999999999999999999999999999998776 45899999999998763
No 47
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.00021 Score=55.52 Aligned_cols=58 Identities=14% Similarity=0.150 Sum_probs=49.0
Q ss_pred CCchhHHHHHHHhhCC------CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CccCH
Q 036580 30 FLPIANVSRIMKKALP------ANAKISKDAKETVQECVSEFISFVTGEASDKCQREKR---KTING 87 (186)
Q Consensus 30 ~LPkA~V~RImK~alP------~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kR---KTIt~ 87 (186)
.||+.++.|++|+... .+.|++.+|+.+||+++|.|+..|...+|-+|.|+.| |.|+.
T Consensus 1 LI~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~ 67 (121)
T 2ly8_A 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISG 67 (121)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSS
T ss_pred CCCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhH
Confidence 3788888998887642 2679999999999999999999999999999999855 55664
No 48
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.0014 Score=48.36 Aligned_cols=62 Identities=15% Similarity=0.167 Sum_probs=47.3
Q ss_pred CchhHHHHHHHhhCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCccCHHHHHH
Q 036580 31 LPIANVSRIMKKALP-ANAKISKDAKETVQECVSEFISFVTGEASDKCQREK-------RKTINGDDLLW 92 (186)
Q Consensus 31 LPkA~V~RImK~alP-~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~k-------RKTIt~eDVl~ 92 (186)
||+.+|.||++.... ++.||++||..++++....||..-...|.+..+..+ ..++.-+|+.+
T Consensus 2 ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~~~~~~~~~~d~~LeveDLEk 71 (88)
T 3v9r_B 2 LSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKDINGERGDKSPLELSHQDLER 71 (88)
T ss_dssp CCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeeehHHHHH
Confidence 899999999997764 578999999999999999999888887766544322 24566666654
No 49
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=94.74 E-value=0.1 Score=51.81 Aligned_cols=68 Identities=15% Similarity=0.197 Sum_probs=61.5
Q ss_pred cccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 036580 27 QDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTT 96 (186)
Q Consensus 27 ~d~~LPkA~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~ 96 (186)
..+.+|..+|.|++|... ..||+..|..-+.-..|.....|...|...|...+++.|++.||..|+..
T Consensus 101 ~~l~~pv~~~~~~l~~~~--~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~ 168 (1049)
T 3ksy_A 101 NPLSLPVEKIHPLLKEVL--GYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCA 168 (1049)
T ss_dssp SSCSSCHHHHHHHHHHHH--CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHH
T ss_pred CCccccHHHHHHHhhccc--ccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccC
Confidence 457799999999997766 46999999999999999999999999999999999999999999999864
No 50
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.78 E-value=0.21 Score=41.79 Aligned_cols=66 Identities=15% Similarity=0.217 Sum_probs=52.1
Q ss_pred CchhHHHHHHHhhCC-CCcccCHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 036580 31 LPIANVSRIMKKALP-ANAKISKDAKETVQECVS----EFISFVTGEASDKCQREKRKTINGDDLLWAMTT 96 (186)
Q Consensus 31 LPkA~V~RImK~alP-~~~rISkDA~~ai~k~ae----eFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~ 96 (186)
++...+..|++..+. ....++.++.+.|.+.+. ..+..+...|...|...++++|+.+||..|++.
T Consensus 259 ~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 259 YSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 556677777775543 245799999999988886 356677777888888889999999999999986
No 51
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=89.28 E-value=2.1 Score=35.36 Aligned_cols=74 Identities=15% Similarity=0.123 Sum_probs=55.3
Q ss_pred CchhHHHHHHHhhCCC---CcccCHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Q 036580 31 LPIANVSRIMKKALPA---NAKISKDAKETVQECV------------SEFISFVTGEASDKCQREKRKTINGDDLLWAMT 95 (186)
Q Consensus 31 LPkA~V~RImK~alP~---~~rISkDA~~ai~k~a------------eeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~ 95 (186)
|+...+..|++..+.. ...++.++...|.+.+ -.++..+...|...|..+++.+|+.+||..++.
T Consensus 193 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~ 272 (389)
T 1fnn_A 193 YTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSK 272 (389)
T ss_dssp CBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 4456677777665521 2468999999988888 345677778888888888899999999999998
Q ss_pred HcCCccchH
Q 036580 96 TLGFEEYVE 104 (186)
Q Consensus 96 ~LgF~dyi~ 104 (186)
.+....+..
T Consensus 273 ~~~~~~~~~ 281 (389)
T 1fnn_A 273 EVLFGISEE 281 (389)
T ss_dssp HHSCCCCHH
T ss_pred HHhhhhHHH
Confidence 875554433
No 52
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=88.01 E-value=1.2 Score=39.52 Aligned_cols=66 Identities=12% Similarity=0.087 Sum_probs=50.2
Q ss_pred CchhHHHHHHHhhCC-CCcccCHHHHHHHHHHH-H---HHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 036580 31 LPIANVSRIMKKALP-ANAKISKDAKETVQECV-S---EFISFVTGEASDKCQREKRKTINGDDLLWAMTT 96 (186)
Q Consensus 31 LPkA~V~RImK~alP-~~~rISkDA~~ai~k~a-e---eFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~ 96 (186)
++...+..|++..+. ....++.++...|.+.+ . .....|...|..+|..+++.+|+.+||..|+.-
T Consensus 366 ~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~ 436 (456)
T 2c9o_A 366 YTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISEL 436 (456)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHH
Confidence 456677777765542 23568999998888876 2 356667778888899899999999999999865
No 53
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=87.80 E-value=0.38 Score=32.66 Aligned_cols=59 Identities=19% Similarity=0.240 Sum_probs=42.0
Q ss_pred HHHHhhCCCCcccCHH-HHHHHHHHHHHH----HHHHHHHHHHHHHhcCCCccCHHHHHHHHHHc
Q 036580 38 RIMKKALPANAKISKD-AKETVQECVSEF----ISFVTGEASDKCQREKRKTINGDDLLWAMTTL 97 (186)
Q Consensus 38 RImK~alP~~~rISkD-A~~ai~k~aeeF----I~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~L 97 (186)
.|++..+. ...++.+ -...|.+.++-| |..|..+|...|.+.++..|+.+|+..||+++
T Consensus 10 ~Il~~~l~-~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v 73 (78)
T 3kw6_A 10 DILKIHSR-KMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 73 (78)
T ss_dssp HHHHHHHT-TSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHhc-CCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 34444442 2344322 356666666656 78888899999999999999999999999763
No 54
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=87.76 E-value=1 Score=37.05 Aligned_cols=67 Identities=7% Similarity=0.095 Sum_probs=52.8
Q ss_pred CchhHHHHHHHhhCC---CCcccCHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHc
Q 036580 31 LPIANVSRIMKKALP---ANAKISKDAKETVQECVS------EFISFVTGEASDKCQREKRKTINGDDLLWAMTTL 97 (186)
Q Consensus 31 LPkA~V~RImK~alP---~~~rISkDA~~ai~k~ae------eFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~L 97 (186)
+....+..|++..+. ....++.++.+.+.+.+. ..+..+...|...|...++.+|+.+||..|++.+
T Consensus 201 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 201 YTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp CCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 336677777776542 145799999999988887 5667788888888988889999999999999876
No 55
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=85.72 E-value=1.5 Score=34.96 Aligned_cols=59 Identities=17% Similarity=0.273 Sum_probs=54.2
Q ss_pred CCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHH
Q 036580 30 FLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDL 90 (186)
Q Consensus 30 ~LPkA~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDV 90 (186)
-+|.+.+.|+++.+. ..-|-|+-..-+.+.++.=+..|.--|...|+.++|.+|...|+
T Consensus 2 vm~~~~~e~lFR~aa--~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DL 60 (148)
T 1wwi_A 2 LMKVAEFERLFRQAA--GLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDL 60 (148)
T ss_dssp CSCHHHHHHHHHHHH--CCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGS
T ss_pred cCCHHHHHHHHHHHh--ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 378899999999998 57788999999999999999999999999999999999999886
No 56
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=85.54 E-value=2.2 Score=34.93 Aligned_cols=69 Identities=7% Similarity=0.054 Sum_probs=51.9
Q ss_pred CchhHHHHHHHhhCC---CCcccCHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcCC
Q 036580 31 LPIANVSRIMKKALP---ANAKISKDAKETVQECVS------EFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGF 99 (186)
Q Consensus 31 LPkA~V~RImK~alP---~~~rISkDA~~ai~k~ae------eFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~LgF 99 (186)
|....+..|++..+. ....++.++...+.+.+. ..+..+...|...+..+++.+|+.+||..|++.+..
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~ 274 (386)
T 2qby_A 197 YNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIER 274 (386)
T ss_dssp CCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhh
Confidence 455667777776432 135789999988888776 345567778888888888999999999999987643
No 57
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=83.36 E-value=1.3 Score=36.13 Aligned_cols=63 Identities=13% Similarity=0.132 Sum_probs=56.9
Q ss_pred cccc--CCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHH
Q 036580 26 EQDR--FLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDL 90 (186)
Q Consensus 26 e~d~--~LPkA~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDV 90 (186)
.++. .+|.+.+.||++.+. ..-|.++-...+.+.++.=+..|.--|...|+.++|-+|...|+
T Consensus 20 ~~~Mm~vmg~~kferlFR~aa--gLDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DL 84 (171)
T 1r4v_A 20 IETMLRPKGFDKLDHYFRTEL--DIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADL 84 (171)
T ss_dssp -CCTTSCTTHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGS
T ss_pred HHHHHhcCChHHHHHHHHHHh--ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 4444 789999999999998 67788999999999999999999999999999999999999886
No 58
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=82.29 E-value=6 Score=36.33 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=41.4
Q ss_pred cccCHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 036580 48 AKISKDAKETVQECV-------------SEFISFVTGEASDKCQREKRKTINGDDLLWAMTT 96 (186)
Q Consensus 48 ~rISkDA~~ai~k~a-------------eeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~ 96 (186)
..++.+|...|.+.+ ..-+..|...|..+|..+++.+|+.+||..|++.
T Consensus 313 ~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 313 PHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp CCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 479999999888855 3456677888999999999999999999999964
No 59
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=80.67 E-value=9.8 Score=31.27 Aligned_cols=50 Identities=14% Similarity=0.028 Sum_probs=37.0
Q ss_pred CcccCHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 036580 47 NAKISKDAKETVQECVSE-----------------------FISFVTGEASDKCQREKRKTINGDDLLWAMTT 96 (186)
Q Consensus 47 ~~rISkDA~~ai~k~aee-----------------------FI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~ 96 (186)
++.|+.++.+.+.+.+.. -+..|...|...|.-.+|..|+.+||..++..
T Consensus 224 ~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~ 296 (331)
T 2r44_A 224 KVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYD 296 (331)
T ss_dssp TCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 456888888887765532 23345566677788889999999999999875
No 60
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=78.87 E-value=11 Score=30.73 Aligned_cols=51 Identities=12% Similarity=-0.046 Sum_probs=41.3
Q ss_pred CcccCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHc
Q 036580 47 NAKISKDAKETVQECVSE-------FISFVTGEASDKCQREKRKTINGDDLLWAMTTL 97 (186)
Q Consensus 47 ~~rISkDA~~ai~k~aee-------FI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~L 97 (186)
...|++++.+.|.+.+.. -+..+...|...|...+|.+|+.+||..|+..+
T Consensus 265 ~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 265 KVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMA 322 (350)
T ss_dssp GCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHH
Confidence 358999999999887653 456777778888888899999999999998753
No 61
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=78.38 E-value=2.5 Score=28.91 Aligned_cols=30 Identities=30% Similarity=0.206 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhcCCCccCHHHHHHHHHHc
Q 036580 68 FVTGEASDKCQREKRKTINGDDLLWAMTTL 97 (186)
Q Consensus 68 ~Lts~A~~~a~~~kRKTIt~eDVl~AL~~L 97 (186)
.|..+|...|.+.++..|+.+|+..|+++.
T Consensus 39 ~l~~eAa~~ai~~~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 39 AIMQEAGLRAVRKNRYVILQSDLEEAYATQ 68 (82)
T ss_dssp HHHHHHHHHHHHTTCSEECHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 344456666777788999999999999875
No 62
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=77.42 E-value=2.9 Score=29.17 Aligned_cols=45 Identities=22% Similarity=0.152 Sum_probs=34.8
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcCC
Q 036580 55 KETVQECVSEF----ISFVTGEASDKCQREKRKTINGDDLLWAMTTLGF 99 (186)
Q Consensus 55 ~~ai~k~aeeF----I~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~LgF 99 (186)
.+.|.+.++-| |..|..+|.-.|.+..+..|+.+|+..|++++-.
T Consensus 25 l~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~ 73 (88)
T 3vlf_B 25 WELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVIS 73 (88)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhc
Confidence 45555555555 7777788888888889999999999999997543
No 63
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=77.06 E-value=2.7 Score=28.57 Aligned_cols=33 Identities=24% Similarity=0.178 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcC
Q 036580 66 ISFVTGEASDKCQREKRKTINGDDLLWAMTTLG 98 (186)
Q Consensus 66 I~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~Lg 98 (186)
|..|..+|...|.+..+..|+.+|+..|++++-
T Consensus 40 i~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ 72 (83)
T 3aji_B 40 INSICQESGMLAVRENRYIVLAKDFEKAYKTVI 72 (83)
T ss_dssp HHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHc
Confidence 556777788888888899999999999998753
No 64
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=77.02 E-value=3 Score=29.24 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=31.7
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCccCHHHHHHHHHHc
Q 036580 55 KETVQECVSEF----ISFVTGEASDKCQREKRKTINGDDLLWAMTTL 97 (186)
Q Consensus 55 ~~ai~k~aeeF----I~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~L 97 (186)
.+.|.+.++-| |..|..+|...|.+..+..|+.+|+..|+++.
T Consensus 35 l~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 35 LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp CHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34454444444 55677788888888889999999999999763
No 65
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=74.65 E-value=5 Score=33.21 Aligned_cols=66 Identities=8% Similarity=-0.014 Sum_probs=47.9
Q ss_pred CchhHHHHHHHhhCC---CCcccCHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcC
Q 036580 31 LPIANVSRIMKKALP---ANAKISKDAKETVQECVS------EFISFVTGEASDKCQREKRKTINGDDLLWAMTTLG 98 (186)
Q Consensus 31 LPkA~V~RImK~alP---~~~rISkDA~~ai~k~ae------eFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~Lg 98 (186)
|....+..|++..+. ....++.++...+.+.+. ..+..+...|...|. ++.+|+.+||..+++++.
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 197 YDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp CCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 456777788877532 135789999888888776 234556666777666 678999999999998763
No 66
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=71.74 E-value=7.4 Score=31.05 Aligned_cols=63 Identities=17% Similarity=0.135 Sum_probs=40.1
Q ss_pred hhHHHHHHHhhCCCCcccCH-HHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 036580 33 IANVSRIMKKALPANAKISK-DAKETVQECVS----EFISFVTGEASDKCQREKRKTINGDDLLWAMTT 96 (186)
Q Consensus 33 kA~V~RImK~alP~~~rISk-DA~~ai~k~ae----eFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~ 96 (186)
......|++..+.. ..+.. .....|.+.+. .-|..|...|...|...++.+|+.+||..|+++
T Consensus 190 ~~~r~~il~~~~~~-~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~ 257 (285)
T 3h4m_A 190 EKGRLEILKIHTRK-MNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEK 257 (285)
T ss_dssp HHHHHHHHHHHHTT-SCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHH
Confidence 44455566555431 22221 12344444332 356778888888899999999999999999865
No 67
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=71.23 E-value=12 Score=27.23 Aligned_cols=38 Identities=11% Similarity=0.127 Sum_probs=30.3
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcC
Q 036580 49 KISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLG 98 (186)
Q Consensus 49 rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~Lg 98 (186)
+++..+..+|.. |...|...+...|.++||+.||=+-+
T Consensus 5 ~~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHlLlaLl~~~ 42 (148)
T 1khy_A 5 RLTNKFQLALAD------------AQSLALGHDNQFIEPLHLMSALLNQE 42 (148)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHTCT
T ss_pred hhhHHHHHHHHH------------HHHHHHHcCCCccCHHHHHHHHHcCC
Confidence 567777777765 66788888999999999999986543
No 68
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=68.88 E-value=9.7 Score=28.01 Aligned_cols=63 Identities=10% Similarity=0.109 Sum_probs=41.5
Q ss_pred CchhHHHHHHHhhCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Q 036580 31 LPIANVSRIMKKALP-ANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMT 95 (186)
Q Consensus 31 LPkA~V~RImK~alP-~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~ 95 (186)
++...+..+++..+. ....++.++...|.+.+.--+..+.......+... ++|+.+||..++.
T Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 161 VPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 556666777765542 13458899988888776554554444444444443 6999999998875
No 69
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=68.81 E-value=17 Score=30.42 Aligned_cols=68 Identities=22% Similarity=0.274 Sum_probs=47.8
Q ss_pred hhHHHHHHHhhCC-CCcccCHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcCCc
Q 036580 33 IANVSRIMKKALP-ANAKISKDAKETVQECVS---EFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFE 100 (186)
Q Consensus 33 kA~V~RImK~alP-~~~rISkDA~~ai~k~ae---eFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~LgF~ 100 (186)
...+..|+++... -...++.++...|.+.+. -.+..+...+.++|...++..|+.++|..|++.+.++
T Consensus 182 ~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~~~ 253 (334)
T 1in4_A 182 VKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNID 253 (334)
T ss_dssp HHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCC
Confidence 3456666665431 135688888888876542 3455566677777877788899999999999988764
No 70
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=68.27 E-value=10 Score=27.86 Aligned_cols=38 Identities=16% Similarity=0.330 Sum_probs=30.6
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcC
Q 036580 49 KISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLG 98 (186)
Q Consensus 49 rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~Lg 98 (186)
+++..+..+|+. |...|...+...|.++||+.||=+-+
T Consensus 5 ~~t~~~~~al~~------------A~~~A~~~~h~~i~~eHlLlaLl~~~ 42 (150)
T 2y1q_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVREG 42 (150)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 677777777765 66678888999999999999986543
No 71
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=66.94 E-value=9 Score=28.42 Aligned_cols=37 Identities=11% Similarity=0.237 Sum_probs=30.3
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHc
Q 036580 49 KISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTL 97 (186)
Q Consensus 49 rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~L 97 (186)
++|..+..+|+. |...|...+...|.++||+.||-+-
T Consensus 6 ~~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHLLlaLl~~ 42 (146)
T 3fh2_A 6 RFTDRARRVIVL------------AQEEARMLNHNYIGTEHILLGLIHE 42 (146)
T ss_dssp GBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHH------------HHHHHHHcCCCCchHHHHHHHHHhC
Confidence 677777777766 6677888899999999999998754
No 72
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=66.81 E-value=13 Score=28.14 Aligned_cols=64 Identities=3% Similarity=-0.029 Sum_probs=38.8
Q ss_pred CchhHHHHHHHhhCC-CCcccCHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Q 036580 31 LPIANVSRIMKKALP-ANAKISKDAKETVQECVS---EFISFVTGEASDKCQREKRKTINGDDLLWAMT 95 (186)
Q Consensus 31 LPkA~V~RImK~alP-~~~rISkDA~~ai~k~ae---eFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~ 95 (186)
++...+.+|++..+. ....++.++.+.|.+.+. .-+..+...+...+..++ ++|+.+||..+|+
T Consensus 174 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 174 MMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp CCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 334455555555432 135789999888887664 223333444555554444 5699999988874
No 73
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=65.02 E-value=6 Score=27.18 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=41.5
Q ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCccCHHHHHHHHHHcC
Q 036580 47 NAKISKDAKETVQECVSEFISFVTGEASD-KCQREKRKTINGDDLLWAMTTLG 98 (186)
Q Consensus 47 ~~rISkDA~~ai~k~aeeFI~~Lts~A~~-~a~~~kRKTIt~eDVl~AL~~Lg 98 (186)
...++.||...|.+ +--||.--+....+ +|...+..+||.+.|..|-+.++
T Consensus 3 ~l~Wt~EAe~~Lkk-IP~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~~~ 54 (63)
T 2kru_A 3 ELSWTAEAEKMLGK-VPFFVRKKVRKNTDNYAREIGEPVVTADVFRKAKEHLG 54 (63)
T ss_dssp CCEECHHHHHHHTT-SCHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHHhh
Confidence 45789999999988 66788777766665 89999999999999988866554
No 74
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=64.06 E-value=19 Score=27.33 Aligned_cols=69 Identities=9% Similarity=0.090 Sum_probs=40.0
Q ss_pred CCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcCCc
Q 036580 30 FLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFE 100 (186)
Q Consensus 30 ~LPkA~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~LgF~ 100 (186)
.|....+.||-+-.- ..++.+.++..|.+..+.--..-..++......++.-+|+.+++..+|+.+++.
T Consensus 21 ~l~~~~~~~l~~f~~--~~~lk~~~l~~i~~~l~~~e~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~ 89 (197)
T 3pm8_A 21 ELSSTLLKNLKNFKK--ENELKKIALTIIAKHLCDVEINNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQ 89 (197)
T ss_dssp CCCTTHHHHHHHTTT--SCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHH--ccHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCC
Confidence 355666666654432 345555555554443322211222334555556778899999999999998875
No 75
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=63.09 E-value=18 Score=26.81 Aligned_cols=39 Identities=10% Similarity=0.233 Sum_probs=31.8
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcC
Q 036580 48 AKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLG 98 (186)
Q Consensus 48 ~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~Lg 98 (186)
.+++..+..+|.. |...|...+...|.++||+.||-+-+
T Consensus 6 ~~~T~~a~~~l~~------------A~~~A~~~~~~~i~~eHLLlaLl~~~ 44 (145)
T 3fes_A 6 NRFTQRAKKAIDL------------AFESAKSLGHNIVGSEHILLGLLREE 44 (145)
T ss_dssp CCBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred cccCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 4678888888776 66678888999999999999987643
No 76
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=61.12 E-value=14 Score=27.39 Aligned_cols=63 Identities=5% Similarity=0.038 Sum_probs=40.5
Q ss_pred CchhHHHHHHHhhCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHH
Q 036580 31 LPIANVSRIMKKALP-ANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAM 94 (186)
Q Consensus 31 LPkA~V~RImK~alP-~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL 94 (186)
|+...+..+++..+. ....++.++...|.+.+.--...+-......+. ..+++|+.+||..++
T Consensus 185 l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~-~~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 185 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAML 248 (250)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHT-TTTSSBCHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh-ccCceecHHHHHHHh
Confidence 455667777765542 235788999888888876544444444333333 345689999998775
No 77
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=60.52 E-value=40 Score=23.49 Aligned_cols=38 Identities=18% Similarity=0.108 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCCccCHHHHHHHHHHcCCccchHHHHHH
Q 036580 72 EASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVY 109 (186)
Q Consensus 72 ~A~~~a~~~kRKTIt~eDVl~AL~~LgF~dyi~~Lk~~ 109 (186)
.+......++.-+|+.+++..+|+.++..--...++..
T Consensus 100 ~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~ 137 (161)
T 3fwb_A 100 RAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAM 137 (161)
T ss_dssp HHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHcCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHH
Confidence 44555556677789999999999998865333344433
No 78
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=59.16 E-value=9.7 Score=27.71 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=20.3
Q ss_pred HHHHHHHhcCCCccCHHHHHHHHH
Q 036580 72 EASDKCQREKRKTINGDDLLWAMT 95 (186)
Q Consensus 72 ~A~~~a~~~kRKTIt~eDVl~AL~ 95 (186)
.|...|...+...|..+||+.||=
T Consensus 12 ~A~~~A~~~~~~~i~~eHlLlaLl 35 (143)
T 1k6k_A 12 MAFARAREHRHEFMTVEHLLLALL 35 (143)
T ss_dssp HHHHHHHHHTBSEECHHHHHHHHT
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHH
Confidence 366778888999999999999983
No 79
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=58.70 E-value=51 Score=24.16 Aligned_cols=55 Identities=13% Similarity=0.174 Sum_probs=37.2
Q ss_pred CchhHHHHHHHhhC---C----CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHc
Q 036580 31 LPIANVSRIMKKAL---P----ANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTL 97 (186)
Q Consensus 31 LPkA~V~RImK~al---P----~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~L 97 (186)
+....|++.+.+.+ | ....+|..+..+|.+ |...|+..+...|+.+||+.||-+-
T Consensus 56 v~~~~l~~~l~~~l~~~~~~~~~~~~~s~~~~~vL~~------------A~~~a~~~~~~~i~~eHlLlall~~ 117 (146)
T 3fh2_A 56 ISLDAVRQEVEEIIGQGSQPTTGHIPFTPRAKKVLEL------------SLREGLQMGHKYIGTEFLLLGLIRE 117 (146)
T ss_dssp CCHHHHHHHHHHHHCCCSCCCCSCCCBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCCCcCCCcCCHHHHHHHHH------------HHHHHHHcCCCcCcHHHHHHHHHhC
Confidence 44455555554443 1 124577777766665 6667888899999999999998653
No 80
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=58.36 E-value=7.5 Score=26.61 Aligned_cols=49 Identities=8% Similarity=0.119 Sum_probs=39.0
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCccCHHHHHHHHHHc
Q 036580 48 AKISKDAKETVQECVSEFISFVTGEASD-KCQREKRKTINGDDLLWAMTTL 97 (186)
Q Consensus 48 ~rISkDA~~ai~k~aeeFI~~Lts~A~~-~a~~~kRKTIt~eDVl~AL~~L 97 (186)
+.++.||...|.+ +--||.--+....+ +|...+..+||.+.|..|-+.+
T Consensus 3 l~Wt~EAe~~Lkk-IP~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~~ 52 (62)
T 2l09_A 3 LRWTSEAKTKLKN-IPFFARSQAKARIEQLARQAEQDIVTPELVEQARLEF 52 (62)
T ss_dssp CEECHHHHHHHHT-SCGGGHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHHH
Confidence 4688899988888 66777776666655 8999999999999998876543
No 81
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=57.11 E-value=68 Score=27.15 Aligned_cols=69 Identities=10% Similarity=0.078 Sum_probs=46.7
Q ss_pred chhHHHHHHHhhCCC-CcccCHHHHHHHHHHHHH----HHHHHHHHHHHHHHhc------------CCCccCHHHHHHHH
Q 036580 32 PIANVSRIMKKALPA-NAKISKDAKETVQECVSE----FISFVTGEASDKCQRE------------KRKTINGDDLLWAM 94 (186)
Q Consensus 32 PkA~V~RImK~alP~-~~rISkDA~~ai~k~aee----FI~~Lts~A~~~a~~~------------kRKTIt~eDVl~AL 94 (186)
+......|++..+.. ...++.+....|.+.+.- -|..|...|+..+.++ ....|+.+||..++
T Consensus 283 ~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al 362 (389)
T 3vfd_A 283 NEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESL 362 (389)
T ss_dssp CHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHH
Confidence 445555666655532 346888888888876654 5556667776666654 45689999999999
Q ss_pred HHcCCc
Q 036580 95 TTLGFE 100 (186)
Q Consensus 95 ~~LgF~ 100 (186)
+.+.-.
T Consensus 363 ~~~~~s 368 (389)
T 3vfd_A 363 KKIKRS 368 (389)
T ss_dssp HHCCCS
T ss_pred HHcCCC
Confidence 976443
No 82
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=55.88 E-value=30 Score=29.22 Aligned_cols=64 Identities=17% Similarity=0.123 Sum_probs=39.9
Q ss_pred HHHHHHHhhCC-CCcccCHHHHHHHHHHHHH----HHHHHHHHHHHHHHh------------cCCCccCHHHHHHHHHHc
Q 036580 35 NVSRIMKKALP-ANAKISKDAKETVQECVSE----FISFVTGEASDKCQR------------EKRKTINGDDLLWAMTTL 97 (186)
Q Consensus 35 ~V~RImK~alP-~~~rISkDA~~ai~k~aee----FI~~Lts~A~~~a~~------------~kRKTIt~eDVl~AL~~L 97 (186)
....|++..+. ....++.++...|.+.+.- -|..|..+|+..+.+ ...+.|+.+|+..||+..
T Consensus 255 ~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~ 334 (357)
T 3d8b_A 255 ARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTV 334 (357)
T ss_dssp HHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhc
Confidence 33444444331 1245788888877776543 456666666655554 234689999999999875
Q ss_pred C
Q 036580 98 G 98 (186)
Q Consensus 98 g 98 (186)
-
T Consensus 335 ~ 335 (357)
T 3d8b_A 335 R 335 (357)
T ss_dssp G
T ss_pred C
Confidence 4
No 83
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=55.78 E-value=42 Score=27.76 Aligned_cols=69 Identities=9% Similarity=0.031 Sum_probs=50.8
Q ss_pred CCchhHHHHHHHhhCC---CCcccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHc
Q 036580 30 FLPIANVSRIMKKALP---ANAKISKDAKETVQECVS---------EFISFVTGEASDKCQREKRKTINGDDLLWAMTTL 97 (186)
Q Consensus 30 ~LPkA~V~RImK~alP---~~~rISkDA~~ai~k~ae---------eFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~L 97 (186)
.|+...+..|++..+. ....++.++...|.+.+. .++..|...|...+...++.+|+.+||..++..+
T Consensus 214 ~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~ 293 (412)
T 1w5s_A 214 AYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN 293 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3555677777754331 123588898888888877 3677888888888888888999999999888765
Q ss_pred C
Q 036580 98 G 98 (186)
Q Consensus 98 g 98 (186)
.
T Consensus 294 ~ 294 (412)
T 1w5s_A 294 E 294 (412)
T ss_dssp -
T ss_pred h
Confidence 4
No 84
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.46 E-value=11 Score=33.96 Aligned_cols=57 Identities=21% Similarity=0.203 Sum_probs=39.3
Q ss_pred HHHhhCCCCcccCHHH-HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 036580 39 IMKKALPANAKISKDA-KETVQECVSEF----ISFVTGEASDKCQREKRKTINGDDLLWAMTT 96 (186)
Q Consensus 39 ImK~alP~~~rISkDA-~~ai~k~aeeF----I~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~ 96 (186)
|++..+. ...++.|. .+.|.+.++-| |..|..+|.-.|.+.+|..|+.+|+..|+++
T Consensus 352 Il~~~~~-~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 352 IFGTIAS-KMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp HHHHHHH-SSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHhc-CCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 4444332 33444442 45555555443 7788888888899999999999999999875
No 85
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=55.09 E-value=15 Score=29.00 Aligned_cols=63 Identities=11% Similarity=0.131 Sum_probs=41.3
Q ss_pred hHHHHHHHhhCCCCcccCHHH-HHHHHHHHHH----HHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHc
Q 036580 34 ANVSRIMKKALPANAKISKDA-KETVQECVSE----FISFVTGEASDKCQREKRKTINGDDLLWAMTTL 97 (186)
Q Consensus 34 A~V~RImK~alP~~~rISkDA-~~ai~k~aee----FI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~L 97 (186)
.....|++..+. ...++.++ ...+.+.+.- -|..+..+|...|...++.+|+.+||..|++++
T Consensus 185 ~~r~~il~~~~~-~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 185 RGREQILKVHMR-RVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKI 252 (257)
T ss_dssp HHHHHHHHHHHT-TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Confidence 344556665543 23455444 3444443332 455677778888888889999999999999875
No 86
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=53.90 E-value=12 Score=29.43 Aligned_cols=58 Identities=21% Similarity=0.225 Sum_probs=37.5
Q ss_pred HHHHHHhhCCCCcccCHHH-HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCccCHHHHHHHH
Q 036580 36 VSRIMKKALPANAKISKDA-KETVQECVSEF----ISFVTGEASDKCQREKRKTINGDDLLWAM 94 (186)
Q Consensus 36 V~RImK~alP~~~rISkDA-~~ai~k~aeeF----I~~Lts~A~~~a~~~kRKTIt~eDVl~AL 94 (186)
..+|++..+. ...++.|+ ...|.+.+.-| |..+..+|...|...++.+|+.+|+..|+
T Consensus 191 r~~il~~~~~-~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 191 REQILRIHAR-GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHHT-TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHHc-CCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 3456655442 33455554 55555554433 45666677777888888999999999886
No 87
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.88 E-value=9.3 Score=35.15 Aligned_cols=59 Identities=19% Similarity=0.200 Sum_probs=39.7
Q ss_pred HHHHhhCCCCcccCHHH-HHHHHHHHHH----HHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHc
Q 036580 38 RIMKKALPANAKISKDA-KETVQECVSE----FISFVTGEASDKCQREKRKTINGDDLLWAMTTL 97 (186)
Q Consensus 38 RImK~alP~~~rISkDA-~~ai~k~aee----FI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~L 97 (186)
.|++-.+. ...++.|. .+.|.+.++- =|..|..+|.-.|.+++|+.|+.+|+..|++++
T Consensus 387 ~Ilk~~l~-~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV 450 (467)
T 4b4t_H 387 NIFRIHSK-SMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKV 450 (467)
T ss_dssp HHHHHHHT-TSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHhc-CCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 44444432 23344332 4555555543 367788888888989999999999999999763
No 88
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=51.02 E-value=44 Score=21.09 Aligned_cols=40 Identities=18% Similarity=0.197 Sum_probs=32.2
Q ss_pred HHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHH
Q 036580 35 NVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASD 75 (186)
Q Consensus 35 ~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~ 75 (186)
-|+.+|---. |...-..|+..+|-+.+..||..|+.+|.+
T Consensus 5 ei~~mMy~fG-D~~~P~~ETv~llEeiV~~~i~~l~~~A~~ 44 (45)
T 1bh9_A 5 ELRCMMYGFG-DDQNPYTESVDILEDLVIEFITEMTHKAMS 44 (45)
T ss_dssp HHHHHHHHTT-SCSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3566666554 556778999999999999999999998865
No 89
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=50.09 E-value=45 Score=22.18 Aligned_cols=79 Identities=9% Similarity=0.045 Sum_probs=46.6
Q ss_pred CchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHc---CCccchHHHH
Q 036580 31 LPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTL---GFEEYVEPLK 107 (186)
Q Consensus 31 LPkA~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~L---gF~dyi~~Lk 107 (186)
++...|.+|++..-. +-.|+-+-...+......- ..-...+......++.-+|+.+++..+|..+ +..--...++
T Consensus 6 ~s~~ei~~~~~~~d~-~g~i~~~eF~~~~~~~~~~-~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~g~~~~~~~~~ 83 (109)
T 5pal_A 6 LKADDINKAISAFKD-PGTFDYKRFFHLVGLKGKT-DAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETK 83 (109)
T ss_dssp SCHHHHHHHHHHTCS-TTCCCHHHHHHHHTCTTCC-HHHHHHHHHHHCTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHH
T ss_pred CCHHHHHHHHHHhCC-CCcCcHHHHHHHHhhccCc-HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 677888899988754 4456643222211100000 1112456666777788899999999999998 6654344444
Q ss_pred HHHH
Q 036580 108 VYLQ 111 (186)
Q Consensus 108 ~~L~ 111 (186)
..+.
T Consensus 84 ~~~~ 87 (109)
T 5pal_A 84 ALLA 87 (109)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 90
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=50.07 E-value=52 Score=23.65 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=21.7
Q ss_pred HHHHHHHHhcCCCccCHHHHHHHHHH
Q 036580 71 GEASDKCQREKRKTINGDDLLWAMTT 96 (186)
Q Consensus 71 s~A~~~a~~~kRKTIt~eDVl~AL~~ 96 (186)
..|...++..+...|+.+||+.||-+
T Consensus 89 ~~A~~~A~~~~~~~i~~ehLLlall~ 114 (143)
T 1k6k_A 89 QRAVFHVQSSGRNEVTGANVLVAIFS 114 (143)
T ss_dssp HHHHHHHHSSSCSCBCHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 34777888888999999999999854
No 91
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=49.71 E-value=27 Score=28.09 Aligned_cols=70 Identities=13% Similarity=0.160 Sum_probs=47.3
Q ss_pred CchhHHHHHHHhhCC-CCcccCHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcCCc
Q 036580 31 LPIANVSRIMKKALP-ANAKISKDAKETVQECVS---EFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFE 100 (186)
Q Consensus 31 LPkA~V~RImK~alP-~~~rISkDA~~ai~k~ae---eFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~LgF~ 100 (186)
++...+..|++..+. ....++.++...|.+.+. ..+..+...+...|...+..+|+.+||..+++.+...
T Consensus 168 ~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~ 241 (324)
T 1hqc_A 168 YTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLD 241 (324)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccc
Confidence 556666777766542 135789999888887752 3344445555555555667889999999999876543
No 92
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=49.67 E-value=73 Score=23.25 Aligned_cols=52 Identities=12% Similarity=0.218 Sum_probs=33.5
Q ss_pred cccCHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcCCc
Q 036580 48 AKISKDAKETVQECVS---EFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFE 100 (186)
Q Consensus 48 ~rISkDA~~ai~k~ae---eFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~LgF~ 100 (186)
.++.+.++..|.+... .-+.. ..++......++--+|+.+++..+|+.+|+.
T Consensus 17 ~~l~~~~l~~~~~~l~~~~~~~~~-l~~~F~~~D~d~~G~i~~~El~~~l~~~g~~ 71 (180)
T 3mse_B 17 SNIRNIIINIMAHELSVINNHIKY-INELFYKLDTNHNGSLSHREIYTVLASVGIK 71 (180)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCTTCSSSEEHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHccCCHHHHHH-HHHHHHHhCCCCCCcCCHHHHHHHHHHcCCC
Confidence 4555555555544432 22222 2345556667778899999999999999986
No 93
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.65 E-value=17 Score=33.13 Aligned_cols=59 Identities=22% Similarity=0.240 Sum_probs=41.3
Q ss_pred HHHHHhhCCCCcccCHHH-HHHHHHHHHH----HHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 036580 37 SRIMKKALPANAKISKDA-KETVQECVSE----FISFVTGEASDKCQREKRKTINGDDLLWAMTT 96 (186)
Q Consensus 37 ~RImK~alP~~~rISkDA-~~ai~k~aee----FI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~ 96 (186)
..|++-.+. ...++.|. .+.|.+.++- =|..|..+|.-.|.+++|..|+.+|+..|+++
T Consensus 359 ~~Il~~~l~-~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 359 KKILGIHTS-KMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp HHHHHHHHT-TSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred HHHHHHHhc-CCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 455555543 34455543 4555555443 46788888988999999999999999999875
No 94
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.22 E-value=18 Score=32.54 Aligned_cols=58 Identities=19% Similarity=0.211 Sum_probs=39.0
Q ss_pred HHHHhhCCCCcccCHHH-HHHHHHHHH----HHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 036580 38 RIMKKALPANAKISKDA-KETVQECVS----EFISFVTGEASDKCQREKRKTINGDDLLWAMTT 96 (186)
Q Consensus 38 RImK~alP~~~rISkDA-~~ai~k~ae----eFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~ 96 (186)
.|++-.+. ...++.|. ...|.+.++ .=|..|..+|...|.+++|..|+.+|+..|+++
T Consensus 326 ~Il~~~~~-~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 326 EILRIHSR-KMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp HHHHHHHT-TSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHhc-CCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 34444432 33444432 444555443 346778888888899999999999999999975
No 95
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=49.07 E-value=22 Score=23.56 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=26.2
Q ss_pred CCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHH
Q 036580 30 FLPIANVSRIMKKALPANAKISKDAKETVQECVSEF 65 (186)
Q Consensus 30 ~LPkA~V~RImK~alP~~~rISkDA~~ai~k~aeeF 65 (186)
.+..++|.|++...- ....|+.+.++.|.++++++
T Consensus 11 GVS~sTVSrvLng~~-~~~~vs~et~~rI~~aa~~l 45 (65)
T 1uxc_A 11 GVSRTTASYVINGKA-KQYRVSDKTVEKVMAVVREH 45 (65)
T ss_dssp TSCHHHHHHHHHTCT-TTTTCTTHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHcCCC-CCCCCCHHHHHHHHHHHHHh
Confidence 478899999997641 12378999988888887765
No 96
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=49.02 E-value=21 Score=28.68 Aligned_cols=59 Identities=20% Similarity=0.224 Sum_probs=37.7
Q ss_pred HHHHHHHhhCCCCcccCHHH-HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCccCHHHHHHHH
Q 036580 35 NVSRIMKKALPANAKISKDA-KETVQECVSEF----ISFVTGEASDKCQREKRKTINGDDLLWAM 94 (186)
Q Consensus 35 ~V~RImK~alP~~~rISkDA-~~ai~k~aeeF----I~~Lts~A~~~a~~~kRKTIt~eDVl~AL 94 (186)
...+|++..+. ...++.|+ ...|.+.+.-| |..+..+|...|...++.+|+.+||..|+
T Consensus 214 ~r~~il~~~~~-~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 214 GREQILRIHAR-GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHHHHT-TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHHHHc-cCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 34456665442 34455554 45555544332 44566677777888888999999999886
No 97
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=48.41 E-value=54 Score=26.12 Aligned_cols=59 Identities=12% Similarity=0.181 Sum_probs=38.9
Q ss_pred ccCHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcC------------CCccCHHHHHHHHHHcCCccchHHHH
Q 036580 49 KISKDAKETVQECVSEF----ISFVTGEASDKCQREK------------RKTINGDDLLWAMTTLGFEEYVEPLK 107 (186)
Q Consensus 49 rISkDA~~ai~k~aeeF----I~~Lts~A~~~a~~~k------------RKTIt~eDVl~AL~~LgF~dyi~~Lk 107 (186)
.++.++...|.+.+.-| |..|..+|...+.++- ..+|+.+|+..|++.+.-.-..+.++
T Consensus 208 ~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~ 282 (297)
T 3b9p_A 208 PLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLN 282 (297)
T ss_dssp CSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCCCSSCHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCCCCCHHHHH
Confidence 47788888777766543 3456666665555543 36899999999998876544433333
No 98
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=48.21 E-value=47 Score=27.05 Aligned_cols=70 Identities=14% Similarity=0.117 Sum_probs=49.0
Q ss_pred CchhHHHHHHHhhCC-CCcccCHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcCCc
Q 036580 31 LPIANVSRIMKKALP-ANAKISKDAKETVQECVS---EFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFE 100 (186)
Q Consensus 31 LPkA~V~RImK~alP-~~~rISkDA~~ai~k~ae---eFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~LgF~ 100 (186)
++...+..|++..+. ....++.++...|.+.+. ..+..+...+...|...++.+|+.+||..++..+++.
T Consensus 184 ~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~ 257 (338)
T 3pfi_A 184 YKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVN 257 (338)
T ss_dssp CCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHhCCc
Confidence 345556666665542 135689999998888543 2444555666667877888899999999999987764
No 99
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.20 E-value=19 Score=32.52 Aligned_cols=32 Identities=34% Similarity=0.298 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 036580 65 FISFVTGEASDKCQREKRKTINGDDLLWAMTT 96 (186)
Q Consensus 65 FI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~ 96 (186)
=|..|..+|.-.|.+++|..|+.+|+..|+++
T Consensus 390 Di~~l~~eA~~~air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 390 DIRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 36778888888898999999999999999975
No 100
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=47.98 E-value=63 Score=22.03 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCCccCHHHHHHHHHH-cCCccchHHHHHHHH
Q 036580 71 GEASDKCQREKRKTINGDDLLWAMTT-LGFEEYVEPLKVYLQ 111 (186)
Q Consensus 71 s~A~~~a~~~kRKTIt~eDVl~AL~~-LgF~dyi~~Lk~~L~ 111 (186)
..+......++.-+|+.+++..+|.. ++..-=...++..+.
T Consensus 91 ~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 132 (153)
T 3ox6_A 91 RDAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIR 132 (153)
T ss_dssp HHHHHHHCTTCSSSBCHHHHHHHHHHHHSSCCCHHHHHHHHH
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 44566666777889999999999998 776533334444443
No 101
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=47.25 E-value=64 Score=21.91 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCCccCHHHHHHHHHHcCCccchHHHHHHHHHH
Q 036580 71 GEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRF 113 (186)
Q Consensus 71 s~A~~~a~~~kRKTIt~eDVl~AL~~LgF~dyi~~Lk~~L~~~ 113 (186)
..+......++.-+|+.+++..+|..++..-=...++..+..+
T Consensus 87 ~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 129 (147)
T 4ds7_A 87 LEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREV 129 (147)
T ss_dssp HHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 3455556677788999999999999998653344444444433
No 102
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=46.53 E-value=10 Score=35.10 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=36.2
Q ss_pred ccCHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 036580 49 KISKDAKETVQECVSE------------------FISFVTGEASDKCQREKRKTINGDDLLWAMTT 96 (186)
Q Consensus 49 rISkDA~~ai~k~aee------------------FI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~ 96 (186)
.+++++.+.|.+.... -+..|...|...|.-..|.+|+.+||..|++-
T Consensus 521 ~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l 586 (595)
T 3f9v_A 521 KITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINI 586 (595)
T ss_dssp CCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHH
Confidence 5777777777766332 24566677777888899999999999999864
No 103
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=45.87 E-value=39 Score=29.98 Aligned_cols=68 Identities=9% Similarity=0.146 Sum_probs=45.6
Q ss_pred CCchhHHHHHHHhhCC--------CCcccCHHHHHHHHHHHHHH---HHHHHHHHHHHHHhc--CCCccCHHHHHHHHHH
Q 036580 30 FLPIANVSRIMKKALP--------ANAKISKDAKETVQECVSEF---ISFVTGEASDKCQRE--KRKTINGDDLLWAMTT 96 (186)
Q Consensus 30 ~LPkA~V~RImK~alP--------~~~rISkDA~~ai~k~aeeF---I~~Lts~A~~~a~~~--kRKTIt~eDVl~AL~~ 96 (186)
.++...+..|++..+. ....|+.++.+.|.+.+.-- +..+...+...|... ++.+|+.+||..++..
T Consensus 164 ~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 164 SLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred CcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Confidence 3667778888877653 23569999999998876422 223333444444423 5678999999999886
Q ss_pred c
Q 036580 97 L 97 (186)
Q Consensus 97 L 97 (186)
.
T Consensus 244 ~ 244 (447)
T 3pvs_A 244 R 244 (447)
T ss_dssp C
T ss_pred h
Confidence 4
No 104
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=45.43 E-value=64 Score=21.37 Aligned_cols=29 Identities=10% Similarity=0.001 Sum_probs=23.2
Q ss_pred HHHHHHHhcCCCccCHHHHHHHHHHcCCc
Q 036580 72 EASDKCQREKRKTINGDDLLWAMTTLGFE 100 (186)
Q Consensus 72 ~A~~~a~~~kRKTIt~eDVl~AL~~LgF~ 100 (186)
.+......++.-+|+.+++..+|+.+++.
T Consensus 28 ~~F~~~D~d~~G~i~~~el~~~l~~~g~~ 56 (105)
T 1wlz_A 28 QEFENFDTMKTNTISREEFRAICNRRVQI 56 (105)
T ss_dssp HHHHHHCTTCSSCBCHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHHhCCC
Confidence 35555667778899999999999998875
No 105
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=44.78 E-value=22 Score=27.78 Aligned_cols=37 Identities=14% Similarity=0.255 Sum_probs=28.7
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHc
Q 036580 49 KISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTL 97 (186)
Q Consensus 49 rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~L 97 (186)
+++..+..+|+. |...|...+-..|.++||+.||-+-
T Consensus 24 kfT~~a~~aL~~------------A~~~A~~~~h~~I~~EHLLlaLL~~ 60 (171)
T 3zri_A 24 KLNAQSKLALEQ------------AASLCIERQHPEVTLEHYLDVLLDN 60 (171)
T ss_dssp HBCHHHHHHHHH------------HHHHHHHHTCSEECHHHHHHHHTTC
T ss_pred HcCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHHc
Confidence 566666666655 6667888899999999999998653
No 106
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.38 E-value=19 Score=32.46 Aligned_cols=43 Identities=14% Similarity=0.194 Sum_probs=32.8
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHc
Q 036580 55 KETVQECVS----EFISFVTGEASDKCQREKRKTINGDDLLWAMTTL 97 (186)
Q Consensus 55 ~~ai~k~ae----eFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~L 97 (186)
...|.+.++ .-|..|..+|...|.+.++..|+.+|+..||++.
T Consensus 376 l~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 376 WQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 344554443 2467788888888888999999999999999764
No 107
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=44.22 E-value=67 Score=21.27 Aligned_cols=79 Identities=10% Similarity=0.058 Sum_probs=45.6
Q ss_pred CCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHc---CCccchHHH
Q 036580 30 FLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTL---GFEEYVEPL 106 (186)
Q Consensus 30 ~LPkA~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~L---gF~dyi~~L 106 (186)
.++...|.+|++..- .+-.|+-+-...+...... -..-...+......++.-+|+.+++..+|..+ +..--...+
T Consensus 6 ~~~~~ei~~~~~~~D-~~g~i~~~eF~~~~~~~~~-~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~ 83 (109)
T 3fs7_A 6 ILSAKDIESALSSCQ-AADSFNYKSFFSTVGLSSK-TPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAET 83 (109)
T ss_dssp TSCHHHHHHHHHHTC-STTCCCHHHHHHHHTCTTC-CHHHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTTSCCCCHHHH
T ss_pred cCCHHHHHHHHHhcC-CCCcCcHHHHHHHHhcCCC-cHHHHHHHHHHHCCCCCCeEeHHHHHHHHHHHhcccccCCHHHH
Confidence 367788888888764 3456664322222110000 01113445666677788899999999999988 544333344
Q ss_pred HHHH
Q 036580 107 KVYL 110 (186)
Q Consensus 107 k~~L 110 (186)
+..+
T Consensus 84 ~~~~ 87 (109)
T 3fs7_A 84 KAFL 87 (109)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 108
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=44.08 E-value=29 Score=25.59 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=29.9
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcC
Q 036580 48 AKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLG 98 (186)
Q Consensus 48 ~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~Lg 98 (186)
..+|..+..+|.+ |...|+..+...|+.+||+.||-.-+
T Consensus 80 ~~~s~~~~~vl~~------------A~~~A~~~~~~~v~~eHlLlAll~~~ 118 (145)
T 3fes_A 80 IVLSPRSKQILEL------------SGMFANKLKTNYIGTEHILLAIIQEG 118 (145)
T ss_dssp CEECHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhCC
Confidence 4567766666655 67778888999999999999986543
No 109
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=43.88 E-value=49 Score=19.63 Aligned_cols=27 Identities=11% Similarity=0.070 Sum_probs=18.4
Q ss_pred HHHHHhcCCCccCHHHHHHHHHHcCCc
Q 036580 74 SDKCQREKRKTINGDDLLWAMTTLGFE 100 (186)
Q Consensus 74 ~~~a~~~kRKTIt~eDVl~AL~~LgF~ 100 (186)
......++.-+|+.+++..+|+.++..
T Consensus 7 F~~~D~d~~G~i~~~el~~~l~~~~~~ 33 (67)
T 1tiz_A 7 FEKFDKNKDGKLSLDEFREVALAFSPY 33 (67)
T ss_dssp HHHHCTTSSSCEEHHHHHHHHHHTCTT
T ss_pred HHHHCCCCCCcCcHHHHHHHHHHhCCC
Confidence 334445566678888888888877754
No 110
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=42.35 E-value=23 Score=23.92 Aligned_cols=23 Identities=9% Similarity=-0.026 Sum_probs=19.4
Q ss_pred cCHHHHHHHHHHcCCccchHHHH
Q 036580 85 INGDDLLWAMTTLGFEEYVEPLK 107 (186)
Q Consensus 85 It~eDVl~AL~~LgF~dyi~~Lk 107 (186)
=+++||..-|+.+||++|++...
T Consensus 5 Ws~~~V~~WL~~lgl~~Y~~~F~ 27 (76)
T 2f3n_A 5 WSKFDVGDWLESIHLGEHRDRFE 27 (76)
T ss_dssp CCHHHHHHHHHHTTCGGGHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHHH
Confidence 37899999999999999887654
No 111
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=42.25 E-value=73 Score=21.10 Aligned_cols=79 Identities=16% Similarity=0.046 Sum_probs=45.6
Q ss_pred CCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHc---CCccchHHH
Q 036580 30 FLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTL---GFEEYVEPL 106 (186)
Q Consensus 30 ~LPkA~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~L---gF~dyi~~L 106 (186)
.++...|.+|++..- .+-.|+-+-...+......- ..-...+......++.-+|+.+++..+|..+ +..--...+
T Consensus 6 ~~~~~e~~~~~~~~d-~~g~i~~~eF~~~~~~~~~~-~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~ 83 (109)
T 1bu3_A 6 ILADADVAAALKACE-AADSFNYKAFFAKVGLTAKS-ADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAET 83 (109)
T ss_dssp SSCHHHHHHHHHHTC-STTCCCHHHHHHHHTGGGSC-HHHHHHHHHHHCTTCSSSEEHHHHHTHHHHHSTTCCCCCHHHH
T ss_pred cCCHHHHHHHHHHhC-CCCcCcHHHHHHHHHcChhh-HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHcccCCCCCHHHH
Confidence 466778889888864 34566643322221100000 1122445666667788899999999999998 543333344
Q ss_pred HHHH
Q 036580 107 KVYL 110 (186)
Q Consensus 107 k~~L 110 (186)
+..+
T Consensus 84 ~~~~ 87 (109)
T 1bu3_A 84 KAFL 87 (109)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 112
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=42.04 E-value=97 Score=28.85 Aligned_cols=67 Identities=10% Similarity=0.129 Sum_probs=41.8
Q ss_pred CCchhHHHHHHHhhC--CCCcccCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHhcCCCccC
Q 036580 30 FLPIANVSRIMKKAL--PANAKISKDAKETVQECVSEF---------------------ISFVTGEASDKCQREKRKTIN 86 (186)
Q Consensus 30 ~LPkA~V~RImK~al--P~~~rISkDA~~ai~k~aeeF---------------------I~~Lts~A~~~a~~~kRKTIt 86 (186)
.++...+++.+..+- --...|++++.+.|.+..... +..|...|...|.-.+|.+|+
T Consensus 393 ~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~ 472 (506)
T 3f8t_A 393 VPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVE 472 (506)
T ss_dssp -CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred CCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCC
Confidence 467777777665432 013578888887776643322 223555566677777888888
Q ss_pred HHHHHHHHHH
Q 036580 87 GDDLLWAMTT 96 (186)
Q Consensus 87 ~eDVl~AL~~ 96 (186)
++||..|++-
T Consensus 473 ~eDV~~Ai~L 482 (506)
T 3f8t_A 473 PEDVDIAAEL 482 (506)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888777753
No 113
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=41.98 E-value=69 Score=21.18 Aligned_cols=65 Identities=15% Similarity=0.036 Sum_probs=40.9
Q ss_pred CchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHc
Q 036580 31 LPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTL 97 (186)
Q Consensus 31 LPkA~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~L 97 (186)
++...|.+|++..- .+-.|+-+-...+...... -..-...+......++.-+|+.+++..+|..+
T Consensus 6 ~~~~e~~~l~~~~d-~~g~i~~~eF~~~~~~~~~-~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 70 (108)
T 2pvb_A 6 LKDADVAAALAACS-AADSFKHKEFFAKVGLASK-SLDDVKKAFYVIDQDKSGFIEEDELKLFLQNF 70 (108)
T ss_dssp SCHHHHHHHHHHTC-STTCCCHHHHHHHHTGGGS-CHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGT
T ss_pred CCHHHHHHHHHHhC-CCCcCcHHHHHHHHhCChh-HHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHH
Confidence 56778888888764 3456765433322211000 01123456666677788899999999999998
No 114
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=41.75 E-value=90 Score=22.01 Aligned_cols=41 Identities=22% Similarity=0.234 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCCccCHHHHHHHHHHcCCccchHHHHHHHH
Q 036580 71 GEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQ 111 (186)
Q Consensus 71 s~A~~~a~~~kRKTIt~eDVl~AL~~LgF~dyi~~Lk~~L~ 111 (186)
..|......++.-+|+.+++..+|..+|..--...++..+.
T Consensus 86 ~~aF~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~ 126 (148)
T 2lmt_A 86 REAFKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEMIR 126 (148)
T ss_dssp HHHHHHHHSSCSSEECHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHCCCCcCcCcHHHHHHHHHHcCccccHHHHHHHHH
Confidence 45677777888889999999999999987655555554443
No 115
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=41.25 E-value=65 Score=21.47 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=21.3
Q ss_pred HHHHHhcCCCccCHHHHHHHHHHcCCc
Q 036580 74 SDKCQREKRKTINGDDLLWAMTTLGFE 100 (186)
Q Consensus 74 ~~~a~~~kRKTIt~eDVl~AL~~LgF~ 100 (186)
......++.-+|+.+++..+|+.+++.
T Consensus 35 F~~~D~d~~G~I~~~El~~~l~~~g~~ 61 (94)
T 2kz2_A 35 FRVEDKDGNGYISAAELRHVMTNLGEK 61 (94)
T ss_dssp HHHHCTTCCSCBCHHHHHHHHHHHTCC
T ss_pred HHHHCCCCcCcCCHHHHHHHHHHhCCC
Confidence 344556677789999999999998865
No 116
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A
Probab=40.95 E-value=23 Score=26.55 Aligned_cols=30 Identities=10% Similarity=0.078 Sum_probs=23.5
Q ss_pred HHHHHHHHhcCCCccCHHHHHHHHHHcCCc
Q 036580 71 GEASDKCQREKRKTINGDDLLWAMTTLGFE 100 (186)
Q Consensus 71 s~A~~~a~~~kRKTIt~eDVl~AL~~LgF~ 100 (186)
.++......++.-+|+.+++..+|+.+|+.
T Consensus 55 ~~~F~~~D~d~~G~i~~~El~~~l~~~g~~ 84 (191)
T 3k21_A 55 KSTFLVLDEDGKGYITKEQLKKGLEKDGLK 84 (191)
T ss_dssp HHHHHHHCTTCSSEECHHHHHHHHHHTTCC
T ss_pred HHHHHHHCCCCCCCCcHHHHHHHHHHcCCC
Confidence 334555566778899999999999998875
No 117
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=40.10 E-value=37 Score=21.99 Aligned_cols=27 Identities=22% Similarity=0.188 Sum_probs=20.3
Q ss_pred HHHHHhcCCCccCHHHHHHHHHHcCCc
Q 036580 74 SDKCQREKRKTINGDDLLWAMTTLGFE 100 (186)
Q Consensus 74 ~~~a~~~kRKTIt~eDVl~AL~~LgF~ 100 (186)
......++.-+|+.+++..+|+.+|+.
T Consensus 26 F~~~D~d~~G~i~~~el~~~l~~~g~~ 52 (90)
T 1avs_A 26 FDMFDADGGGDISTKELGTVMRMLGQN 52 (90)
T ss_dssp HHHHCTTCSSEECHHHHHHHHHHTTCC
T ss_pred HHHHCCCCCCcCcHHHHHHHHHHhCCC
Confidence 334455667789999999999988875
No 118
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=39.71 E-value=70 Score=23.93 Aligned_cols=72 Identities=13% Similarity=0.104 Sum_probs=45.1
Q ss_pred CCchhHHHHHHHhhCCCCcccCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcCCccchH
Q 036580 30 FLPIANVSRIMKKALPANAKISKDAKETVQE-----CVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVE 104 (186)
Q Consensus 30 ~LPkA~V~RImK~alP~~~rISkDA~~ai~k-----~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~LgF~dyi~ 104 (186)
.+|....+++|++.. +|.--.+.|.. +.|.....| ....+..+++--+.++++.||+++++..-.+
T Consensus 22 ~v~~~~WK~~aRkLG-----Lse~~Id~Ie~~~~r~l~Eq~yqmL----r~W~~~~G~~~Atv~~L~~aLr~~~l~~~ae 92 (112)
T 1ich_A 22 NVPPLRWKEFVKRLG-----LSDHEIDRLELQNGRCLREAQYSML----ATWRRRTPRREATLELLGRVLRDMDLLGCLE 92 (112)
T ss_dssp HSCSTTHHHHHHHHT-----CCHHHHHHHHHHCCSCHHHHHHHHH----HHHHHHSCCSSCHHHHHHHHHHHTTCHHHHH
T ss_pred hCCHHHHHHHHHHcC-----CCHHHHHHHHHHCcCChHHHHHHHH----HHHHHhcCCCCCcHHHHHHHHHHhccHHHHH
Confidence 367777788887763 44433333331 122222222 2356677778788999999999999887776
Q ss_pred HHHHHH
Q 036580 105 PLKVYL 110 (186)
Q Consensus 105 ~Lk~~L 110 (186)
.++..|
T Consensus 93 ~Ie~~l 98 (112)
T 1ich_A 93 DIEEAL 98 (112)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666644
No 119
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=38.76 E-value=35 Score=23.73 Aligned_cols=51 Identities=27% Similarity=0.341 Sum_probs=34.7
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcCCccchHHHHHHH
Q 036580 48 AKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYL 110 (186)
Q Consensus 48 ~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~LgF~dyi~~Lk~~L 110 (186)
..++.+-...|.+ |......++.-+|+.+++..+|+.+|+.-=...++..+
T Consensus 28 ~~l~~~~~~el~~------------~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~ 78 (100)
T 2lv7_A 28 VDIPEDELEEIRE------------AFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVII 78 (100)
T ss_dssp CCCCGGGHHHHHH------------HHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHH
T ss_pred ccCCHHHHHHHHH------------HHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 3566665555544 55566778888999999999999998753333344433
No 120
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=38.48 E-value=28 Score=23.74 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=20.2
Q ss_pred ccCHHHHHHHHHHcCCccchHHHH
Q 036580 84 TINGDDLLWAMTTLGFEEYVEPLK 107 (186)
Q Consensus 84 TIt~eDVl~AL~~LgF~dyi~~Lk 107 (186)
.=+.+||..-|+.+||++|++...
T Consensus 9 ~Ws~~~V~~WL~~lgl~~Y~~~F~ 32 (81)
T 3bq7_A 9 LWGTEEVAAWLEHLSLCEYKDIFT 32 (81)
T ss_dssp GCCHHHHHHHHHHTTCGGGHHHHH
T ss_pred hCCHHHHHHHHHHCCCHHHHHHHH
Confidence 457899999999999999987654
No 121
>2i6e_A Hypothetical protein; NYSGXRC,10093B, structural genomics, PSI-2, protein structure initiative; 2.50A {Deinococcus radiodurans} SCOP: c.94.1.1
Probab=38.18 E-value=1.6e+02 Score=24.39 Aligned_cols=64 Identities=8% Similarity=0.111 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhhh
Q 036580 53 DAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGEKM 121 (186)
Q Consensus 53 DA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~LgF~dyi~~Lk~~L~~~re~~~~K~ 121 (186)
+...++.++.+....+....+...++.. -+..+.+...+..+.| ++-+..+..|+.|-+.. +..
T Consensus 218 ~~~~~l~~a~~~~~~~~~e~~~~~a~~~---gl~~~~i~~yl~~~~~-~l~~~~~~~l~~~~~~~-~~g 281 (301)
T 2i6e_A 218 ALLQAMREARRRGIGHLAEVSQRHAEKL---GLPERVVQHYLWNFRY-HLEAPDRLGLREFADLA-VPG 281 (301)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHTT---TCCHHHHHHHHHTCBC-SCCHHHHHHHHHHHHHH-STT
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHc---CCCHHHHHHHHHhCee-CCCHHHHHHHHHHHHHH-hcC
Confidence 5667777777777666665444444443 3889999999988776 56677778888887666 443
No 122
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=37.69 E-value=33 Score=27.80 Aligned_cols=67 Identities=16% Similarity=0.097 Sum_probs=40.2
Q ss_pred CCchhHHHHHHHhhCC-CCcccCHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCC-CccCHHHHHHHHHHc
Q 036580 30 FLPIANVSRIMKKALP-ANAKISKDAKETVQECVS----EFISFVTGEASDKCQREKR-KTINGDDLLWAMTTL 97 (186)
Q Consensus 30 ~LPkA~V~RImK~alP-~~~rISkDA~~ai~k~ae----eFI~~Lts~A~~~a~~~kR-KTIt~eDVl~AL~~L 97 (186)
.++...+..+++..+. ....|+.++...|.+.+. ..+..| ..+...+...++ ++|+.+||..++..+
T Consensus 191 ~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l-~~~~~~~~~~~~~~~It~~~v~~~~~~~ 263 (353)
T 1sxj_D 191 ALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLL-QSASKGAQYLGDGKNITSTQVEELAGVV 263 (353)
T ss_dssp CCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHH-HHTHHHHHHHCSCCCCCHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHH-HHHHHhcCCCccCccccHHHHHHHhCCC
Confidence 3555666666665432 245799999988887653 233333 223333433333 389999999887743
No 123
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=37.45 E-value=91 Score=21.64 Aligned_cols=29 Identities=17% Similarity=0.101 Sum_probs=22.5
Q ss_pred HHHHHHHhcCCCccCHHHHHHHHHHcCCc
Q 036580 72 EASDKCQREKRKTINGDDLLWAMTTLGFE 100 (186)
Q Consensus 72 ~A~~~a~~~kRKTIt~eDVl~AL~~LgF~ 100 (186)
.+......++.-+|+.+++..+|..+|..
T Consensus 89 ~~F~~~D~d~~G~I~~~el~~~l~~~g~~ 117 (153)
T 2ovk_B 89 NAFSMFDEDGQGFIPEDYLKDLLENMGDN 117 (153)
T ss_dssp HHHHTTCSSCSSCCCHHHHHHHHHHSSSC
T ss_pred HHHHHHCCCCCCeEcHHHHHHHHHHcCCC
Confidence 44555556677889999999999998864
No 124
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A
Probab=37.44 E-value=87 Score=20.62 Aligned_cols=65 Identities=9% Similarity=0.026 Sum_probs=38.9
Q ss_pred CchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHc
Q 036580 31 LPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTL 97 (186)
Q Consensus 31 LPkA~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~L 97 (186)
++...|.+|++..- .+-.|+-+-...+......- ..-...+......++.-+|+.+++..+|..+
T Consensus 6 ~t~~e~~~~~~~~d-~~g~i~~~eF~~~~~~~~~~-~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 70 (109)
T 1rwy_A 6 LSAEDIKKAIGAFT-AADSFDHKKFFQMVGLKKKS-ADDVKKVFHILDKDKSGFIEEDELGSILKGF 70 (109)
T ss_dssp SCHHHHHHHHHTTC-STTCCCHHHHHHHHTGGGSC-HHHHHHHHHHHSTTCSSEECHHHHHTHHHHH
T ss_pred CCHHHHHHHHHHcC-CCCcEeHHHHHHHHhcCcch-HHHHHHHHHHHCCCCCCeEcHHHHHHHHHHH
Confidence 55667788887754 34456643322221110000 1122456666677788899999999999998
No 125
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=37.08 E-value=2.4e+02 Score=25.52 Aligned_cols=59 Identities=10% Similarity=-0.027 Sum_probs=40.7
Q ss_pred CchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHhcCCCccCHHHHH
Q 036580 31 LPIANVSRIMKKALPANAKISKDAKETVQECVSE-------------FISFVTGEASDKCQREKRKTINGDDLL 91 (186)
Q Consensus 31 LPkA~V~RImK~alP~~~rISkDA~~ai~k~aee-------------FI~~Lts~A~~~a~~~kRKTIt~eDVl 91 (186)
+....|.++.+... .+.|+.++.+.|.+.+.. .+..+...|...|.-.+|..|+++||.
T Consensus 209 ~~~e~l~~~~~~~~--~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 209 VTDEEYERWQKEIG--EITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp BCHHHHHHHHHHHT--TCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred ecHHHHHHHHhcCC--cccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH
Confidence 34444555444443 567888888888777642 233455667778889999999999998
No 126
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=35.71 E-value=89 Score=21.85 Aligned_cols=30 Identities=23% Similarity=0.234 Sum_probs=24.1
Q ss_pred HHHHHHHHhcCCCccCHHHHHHHHHHcCCc
Q 036580 71 GEASDKCQREKRKTINGDDLLWAMTTLGFE 100 (186)
Q Consensus 71 s~A~~~a~~~kRKTIt~eDVl~AL~~LgF~ 100 (186)
..+......++.-+|+.+++..+|..+|..
T Consensus 88 ~~~F~~~D~d~~G~I~~~El~~~l~~~g~~ 117 (159)
T 2ovk_C 88 MEAFKTFDREGQGLISSAEIRNVLKMLGER 117 (159)
T ss_dssp HHHHHHTCTTSSSEECHHHHHHHHHHSSSC
T ss_pred HHHHHHHCCCCCCcCcHHHHHHHHHHhCCC
Confidence 446666667778899999999999998854
No 127
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=35.49 E-value=1.2e+02 Score=21.99 Aligned_cols=53 Identities=21% Similarity=0.252 Sum_probs=35.5
Q ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcCCccchHHHHHH
Q 036580 45 PANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVY 109 (186)
Q Consensus 45 P~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~LgF~dyi~~Lk~~ 109 (186)
|...++|++-...|.+ |......++--+|+.+++..+|+.||+.--...++..
T Consensus 5 ~~~~~Lt~~qi~elk~------------~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~ 57 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKE------------AFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAM 57 (153)
T ss_dssp --CTTCCHHHHHHHHH------------HHHHHCCSTTSCCCHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred ccccCCCHHHHHHHHH------------HHHHHCCCCCCeEcHHHHHHHHHHcCCCccHHHHHHH
Confidence 4456788766555544 3344556677799999999999999987555444443
No 128
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=35.48 E-value=1.1e+02 Score=21.36 Aligned_cols=12 Identities=33% Similarity=0.387 Sum_probs=4.8
Q ss_pred CccCHHHHHHHH
Q 036580 83 KTINGDDLLWAM 94 (186)
Q Consensus 83 KTIt~eDVl~AL 94 (186)
.+|+.++++.++
T Consensus 79 g~i~~~eF~~~~ 90 (169)
T 3qrx_A 79 GTIDFEEFLTMM 90 (169)
T ss_dssp SSEEHHHHHHHH
T ss_pred CcCCHHHHHHHH
Confidence 334444444333
No 129
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=35.12 E-value=2e+02 Score=24.10 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=39.7
Q ss_pred hHHHHHHHhhCCCC-cccCHHHHHHHHHHHHHH----HHHHHHHHHHHHHhc----------------------------
Q 036580 34 ANVSRIMKKALPAN-AKISKDAKETVQECVSEF----ISFVTGEASDKCQRE---------------------------- 80 (186)
Q Consensus 34 A~V~RImK~alP~~-~rISkDA~~ai~k~aeeF----I~~Lts~A~~~a~~~---------------------------- 80 (186)
.....|++..+... ..++.+..+.|.+.+.-| |..|..+|...|.+.
T Consensus 220 ~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (355)
T 2qp9_X 220 AARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDD 299 (355)
T ss_dssp HHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHCSEEEECCC-----CCEEEECTTSS
T ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccCcCCcccc
Confidence 34455666555321 236777777777766543 445555555444332
Q ss_pred ---------------CCCccCHHHHHHHHHHcCC
Q 036580 81 ---------------KRKTINGDDLLWAMTTLGF 99 (186)
Q Consensus 81 ---------------kRKTIt~eDVl~AL~~LgF 99 (186)
....|+.+|+..||+.+-=
T Consensus 300 ~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~p 333 (355)
T 2qp9_X 300 GAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRP 333 (355)
T ss_dssp SEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCC
T ss_pred chhhcccccccccccccCCccHHHHHHHHHHcCC
Confidence 1246999999999998643
No 130
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Probab=34.86 E-value=1.9e+02 Score=26.03 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=28.8
Q ss_pred HHHHHHHhcCCCccCHHHHHHHHHHcCCccchHHHHHHHHH
Q 036580 72 EASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQR 112 (186)
Q Consensus 72 ~A~~~a~~~kRKTIt~eDVl~AL~~LgF~dyi~~Lk~~L~~ 112 (186)
.+......++.-+|+.+++..+|+.+++.-=.+.++..+..
T Consensus 389 ~aFk~fD~D~dG~Is~eELr~~L~~lG~~ls~eei~~Lf~~ 429 (450)
T 3sg6_A 389 EAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIRE 429 (450)
T ss_dssp HHHHHHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHhCCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 45666667778899999999999999875434444444433
No 131
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=34.84 E-value=60 Score=19.96 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=16.8
Q ss_pred HHHhcCCCccCHHHHHHHHHHcCCc
Q 036580 76 KCQREKRKTINGDDLLWAMTTLGFE 100 (186)
Q Consensus 76 ~a~~~kRKTIt~eDVl~AL~~LgF~ 100 (186)
....++.-+|+.+++..+|+.+++.
T Consensus 15 ~~D~d~~G~i~~~el~~~l~~~g~~ 39 (77)
T 2joj_A 15 LFDTNKTGSIDYHELKVAMRALGFD 39 (77)
T ss_dssp HHCCSSSSEEEHHHHHHHHHHHTCC
T ss_pred HhCCCCCCCCcHHHHHHHHHHhCCC
Confidence 3445555677777777777777654
No 132
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=34.51 E-value=7.5 Score=33.92 Aligned_cols=14 Identities=14% Similarity=0.090 Sum_probs=10.8
Q ss_pred CCchhHHHHHHHhh
Q 036580 30 FLPIANVSRIMKKA 43 (186)
Q Consensus 30 ~LPkA~V~RImK~a 43 (186)
..|..-|.|+++..
T Consensus 151 ~~P~~fL~~~~~~l 164 (358)
T 2pk2_A 151 DHPHTHVVKCTQLV 164 (358)
T ss_dssp CCTTHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHc
Confidence 47888888888765
No 133
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=34.20 E-value=1.2e+02 Score=21.24 Aligned_cols=39 Identities=23% Similarity=0.156 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCccCHHHHHHHHHHcCCccchHHHHHHH
Q 036580 72 EASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYL 110 (186)
Q Consensus 72 ~A~~~a~~~kRKTIt~eDVl~AL~~LgF~dyi~~Lk~~L 110 (186)
.+......++.-+|+.+++..+|..++..--...++..+
T Consensus 105 ~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 143 (169)
T 3qrx_A 105 KAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMI 143 (169)
T ss_dssp HHHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 455566667888999999999999998543333444433
No 134
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=34.18 E-value=89 Score=22.02 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=16.3
Q ss_pred HHhcCCCccCHHHHHHHHHHcCC
Q 036580 77 CQREKRKTINGDDLLWAMTTLGF 99 (186)
Q Consensus 77 a~~~kRKTIt~eDVl~AL~~LgF 99 (186)
...++--+|+.+++..+|..+++
T Consensus 34 ~D~d~~G~i~~~el~~~l~~~g~ 56 (166)
T 2mys_B 34 IDQNADGIIDKDDLRETFAAMGR 56 (166)
T ss_pred HCCCCCCcCCHHHHHHHHHHhCC
Confidence 34455667888888888877776
No 135
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=33.93 E-value=42 Score=27.68 Aligned_cols=65 Identities=9% Similarity=0.010 Sum_probs=37.0
Q ss_pred CchhHHHHHHHhhCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Q 036580 31 LPIANVSRIMKKALP-ANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMT 95 (186)
Q Consensus 31 LPkA~V~RImK~alP-~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~ 95 (186)
++...+.+.+++.+. ....|+.+|...|.+.+.-=+..+..+-.+.+.-.+.++|+.+||...+.
T Consensus 142 l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~ 207 (343)
T 1jr3_D 142 PEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVN 207 (343)
T ss_dssp CCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHh
Confidence 455555555544432 24689999999998876533333333323333222345788888866544
No 136
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=33.77 E-value=1.9e+02 Score=26.65 Aligned_cols=46 Identities=26% Similarity=0.417 Sum_probs=29.6
Q ss_pred HHhcCCCccCHHHHHHHHHHcCCc-cchHHHHH------HHHHHHHHHHhhhh
Q 036580 77 CQREKRKTINGDDLLWAMTTLGFE-EYVEPLKV------YLQRFREMEGEKMA 122 (186)
Q Consensus 77 a~~~kRKTIt~eDVl~AL~~LgF~-dyi~~Lk~------~L~~~re~~~~K~~ 122 (186)
++..++++|+.+++.....+.||+ |....+-+ -.+.|.+..++.+.
T Consensus 371 ~~~~~~~~l~G~~af~LyDTyGfP~dLt~eia~e~g~~vD~~gF~~~m~~q~~ 423 (465)
T 1yfs_A 371 ALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQRE 423 (465)
T ss_dssp HHHTTCCEECHHHHHHHHHTSCCCHHHHHHHHHTTTCEECHHHHHHHHHHHHH
T ss_pred HHhcCCCcCCHHHHHhhhhccCCCHHHHHHHHHHcCCeeCHHHHHHHHHHHHH
Confidence 334466789999999999999998 44433321 13457665444433
No 137
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=33.75 E-value=53 Score=23.80 Aligned_cols=26 Identities=8% Similarity=0.203 Sum_probs=21.6
Q ss_pred HHHHHHHHhcCCCccCHHHHHHHHHH
Q 036580 71 GEASDKCQREKRKTINGDDLLWAMTT 96 (186)
Q Consensus 71 s~A~~~a~~~kRKTIt~eDVl~AL~~ 96 (186)
..|...|...+...|..+||+.||-.
T Consensus 89 ~~A~~~A~~~~~~~i~~ehlLlall~ 114 (150)
T 2y1q_A 89 ELSMDEARKLGHSYVGTEHILLGLIR 114 (150)
T ss_dssp HHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeecHHHHHHHHHh
Confidence 44677788888999999999999864
No 138
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=33.54 E-value=98 Score=22.67 Aligned_cols=30 Identities=23% Similarity=0.234 Sum_probs=24.4
Q ss_pred HHHHHHHHhcCCCccCHHHHHHHHHHcCCc
Q 036580 71 GEASDKCQREKRKTINGDDLLWAMTTLGFE 100 (186)
Q Consensus 71 s~A~~~a~~~kRKTIt~eDVl~AL~~LgF~ 100 (186)
.+|......++.-+|+.+++..+|..+|..
T Consensus 88 ~~aF~~fD~d~~G~I~~~el~~~l~~~g~~ 117 (159)
T 3i5g_C 88 MEAFKTFDREGQGLISSAEIRNVLKMLGER 117 (159)
T ss_dssp HHHHHHHCTTSSSEECHHHHHHHHHHSSSC
T ss_pred HHHHHHHhcCCCCcCcHHHHHHHHHHhCCC
Confidence 346677777788899999999999999875
No 139
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=33.37 E-value=12 Score=29.16 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHc
Q 036580 65 FISFVTGEASDKCQREKRKTINGDDLLWAMTTL 97 (186)
Q Consensus 65 FI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~L 97 (186)
-|..|..+|...|...++.+|+.+||..|++++
T Consensus 217 ~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 217 DIANICNEAALHAAREGHTSVHTLNFEYAVERV 249 (262)
T ss_dssp HHHHHHHHHHTC--------CCBCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 455666677777777778899999998888753
No 140
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=33.34 E-value=95 Score=19.85 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=10.5
Q ss_pred hcCCCccCHHHHHHHHHHcCC
Q 036580 79 REKRKTINGDDLLWAMTTLGF 99 (186)
Q Consensus 79 ~~kRKTIt~eDVl~AL~~LgF 99 (186)
.++.-+|+.+++..+|..+++
T Consensus 20 ~d~~G~i~~~el~~~l~~~g~ 40 (92)
T 2kn2_A 20 KDQNGYISASELRHVMINLGE 40 (92)
T ss_dssp TTCSSEECHHHHHHHHHHTTC
T ss_pred CCCCCeEcHHHHHHHHHHhCC
Confidence 334445555555555555543
No 141
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=32.96 E-value=82 Score=27.76 Aligned_cols=38 Identities=16% Similarity=0.330 Sum_probs=31.1
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcC
Q 036580 49 KISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLG 98 (186)
Q Consensus 49 rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~Lg 98 (186)
+++..+..+|.. |...|...+...|..+||+.+|=.-+
T Consensus 5 ~ft~~a~~al~~------------A~~~A~~~~h~~v~~eHLLlaLl~~~ 42 (468)
T 3pxg_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVREG 42 (468)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHSC
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhcc
Confidence 677777777766 66678888999999999999997654
No 142
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=32.80 E-value=50 Score=26.04 Aligned_cols=51 Identities=12% Similarity=0.073 Sum_probs=30.4
Q ss_pred cccCHHHHHHHHHHHHH-----------HHHHHHHHHH-----HHHHhcCC-CccCHHHHHHHHHHcC
Q 036580 48 AKISKDAKETVQECVSE-----------FISFVTGEAS-----DKCQREKR-KTINGDDLLWAMTTLG 98 (186)
Q Consensus 48 ~rISkDA~~ai~k~aee-----------FI~~Lts~A~-----~~a~~~kR-KTIt~eDVl~AL~~Lg 98 (186)
..|+.++.+.|.+.+.. -+..+...+. ..+...++ .+|+.+||..+++.+.
T Consensus 233 ~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 233 IAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp EEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSSS
T ss_pred eccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhhh
Confidence 46999999998887632 1222222222 22222232 3699999999997653
No 143
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L
Probab=32.52 E-value=2.6e+02 Score=26.21 Aligned_cols=30 Identities=17% Similarity=0.281 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCCCccCHHHHHHHHHHcCCc
Q 036580 71 GEASDKCQREKRKTINGDDLLWAMTTLGFE 100 (186)
Q Consensus 71 s~A~~~a~~~kRKTIt~eDVl~AL~~LgF~ 100 (186)
..+......++.-+|+.+++..+|+.+|+.
T Consensus 608 ~~~F~~~D~d~dG~Is~~El~~~L~~~G~~ 637 (714)
T 3bow_A 608 QKIYREIDVDRSGTMNSYEMRKALEEAGFK 637 (714)
T ss_dssp HHHHHHHCTTCCSSEEHHHHHHHHHHTTEE
T ss_pred HHHHHHhCCCCCCeECHHHHHHHHHHcCCC
Confidence 345666667788899999999999998864
No 144
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=32.10 E-value=51 Score=23.78 Aligned_cols=27 Identities=15% Similarity=0.127 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcCCCccCHHHHHHHHH
Q 036580 69 VTGEASDKCQREKRKTINGDDLLWAMT 95 (186)
Q Consensus 69 Lts~A~~~a~~~kRKTIt~eDVl~AL~ 95 (186)
+...|...++..+...|+.+||+.||-
T Consensus 90 vl~~A~~~a~~~~~~~i~~ehlLlall 116 (148)
T 1khy_A 90 VLNLCDKLAQKRGDNFISSELFVLAAL 116 (148)
T ss_dssp HHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeecHHHHHHHHH
Confidence 334567777777889999999999986
No 145
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=31.95 E-value=66 Score=20.26 Aligned_cols=26 Identities=15% Similarity=0.322 Sum_probs=19.2
Q ss_pred HHHHhcCCCccCHHHHHHHHHHcCCc
Q 036580 75 DKCQREKRKTINGDDLLWAMTTLGFE 100 (186)
Q Consensus 75 ~~a~~~kRKTIt~eDVl~AL~~LgF~ 100 (186)
.....++.-+|+.+++..+|+.+|+.
T Consensus 21 ~~~D~d~~G~i~~~el~~~l~~~g~~ 46 (85)
T 2ktg_A 21 QLFDKDNDNKLTAEELGTVMRALGAN 46 (85)
T ss_dssp HHTCTTCCSEEEHHHHHHHHHTTSSC
T ss_pred HHHCCCCCCcCcHHHHHHHHHHhCCC
Confidence 34455666788888888888888765
No 146
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=31.48 E-value=1.4e+02 Score=27.57 Aligned_cols=65 Identities=20% Similarity=0.309 Sum_probs=42.4
Q ss_pred hhHHHHHHHhhCC-----CCcccCHHHHHHHHHHHHHHH---------HHHHHHHHHHHHh----cCCCccCHHHHHHHH
Q 036580 33 IANVSRIMKKALP-----ANAKISKDAKETVQECVSEFI---------SFVTGEASDKCQR----EKRKTINGDDLLWAM 94 (186)
Q Consensus 33 kA~V~RImK~alP-----~~~rISkDA~~ai~k~aeeFI---------~~Lts~A~~~a~~----~kRKTIt~eDVl~AL 94 (186)
......|++..+. ....|+.++...+.+.+.-|| ..+..+|...+.. .++.+|+.+||..++
T Consensus 351 ~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~ 430 (758)
T 1r6b_X 351 IEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVV 430 (758)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHH
Confidence 3444555554332 246799999998888877753 3344455444443 457889999999998
Q ss_pred HHc
Q 036580 95 TTL 97 (186)
Q Consensus 95 ~~L 97 (186)
..+
T Consensus 431 ~~~ 433 (758)
T 1r6b_X 431 ARI 433 (758)
T ss_dssp HHH
T ss_pred HHh
Confidence 863
No 147
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=31.46 E-value=67 Score=26.41 Aligned_cols=17 Identities=18% Similarity=0.126 Sum_probs=14.1
Q ss_pred CccCHHHHHHHHHHcCC
Q 036580 83 KTINGDDLLWAMTTLGF 99 (186)
Q Consensus 83 KTIt~eDVl~AL~~LgF 99 (186)
..|+.+|+..||+..-=
T Consensus 284 ~~it~~df~~al~~~~p 300 (322)
T 3eie_A 284 PDLTIKDFLKAIKSTRP 300 (322)
T ss_dssp CCCCHHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHhcCC
Confidence 45999999999997653
No 148
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=31.29 E-value=34 Score=22.77 Aligned_cols=32 Identities=25% Similarity=0.387 Sum_probs=21.5
Q ss_pred CCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHH
Q 036580 30 FLPIANVSRIMKKALPANAKISKDAKETVQECVSEF 65 (186)
Q Consensus 30 ~LPkA~V~RImK~alP~~~rISkDA~~ai~k~aeeF 65 (186)
.+..++|.|++... ..|+.+.++.|.++++++
T Consensus 20 GVS~sTVSr~ln~~----~~vs~~t~~rV~~~a~~l 51 (67)
T 2l8n_A 20 KVSTATVSRALMNP----DKVSQATRNRVEKAAREV 51 (67)
T ss_dssp TCCHHHHHHTTTCC----CCSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHcCC----CCCCHHHHHHHHHHHHHh
Confidence 46677777766542 257787777777776664
No 149
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}
Probab=31.24 E-value=59 Score=22.86 Aligned_cols=70 Identities=16% Similarity=0.033 Sum_probs=34.5
Q ss_pred CchhHHHHHHHhhCC-CCcccCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcCCc
Q 036580 31 LPIANVSRIMKKALP-ANAKISK-DAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFE 100 (186)
Q Consensus 31 LPkA~V~RImK~alP-~~~rISk-DA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~LgF~ 100 (186)
++...|..|++..-. .+..|+- |....+......--......+......++.-.|+.+++..+|..+++.
T Consensus 60 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~ 131 (166)
T 2aao_A 60 LKESEILDLMQAADVDNSGTIDYKEFIAATLHLNKIEREDHLFAAFTYFDKDGSGYITPDELQQACEEFGVE 131 (166)
T ss_dssp CCHHHHHHHHHHHCTTCCSSBCHHHHHHHHTTCHHHHTTHHHHHHHHHHCTTCSSSBCHHHHHHHTCC----
T ss_pred CCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHhhcccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCC
Confidence 444556666655432 1234553 222222221111111223445556666777789999999998877654
No 150
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=31.22 E-value=71 Score=20.28 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=19.2
Q ss_pred HHHhcCCCccCHHHHHHHHHHcCCc
Q 036580 76 KCQREKRKTINGDDLLWAMTTLGFE 100 (186)
Q Consensus 76 ~a~~~kRKTIt~eDVl~AL~~LgF~ 100 (186)
....++.-+|+.+++..+|..+|+.
T Consensus 22 ~~D~d~~G~I~~~el~~~l~~~g~~ 46 (86)
T 1j7q_A 22 IFDRNAENIAPVSDTMDMLTKLGQT 46 (86)
T ss_dssp HHSTTTTSCBCHHHHHHHHHHTSCC
T ss_pred HhCCCCCCcCcHHHHHHHHHHHcCC
Confidence 3445666789999999999988864
No 151
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Probab=30.84 E-value=96 Score=20.43 Aligned_cols=67 Identities=6% Similarity=0.090 Sum_probs=41.2
Q ss_pred CCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcC
Q 036580 30 FLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLG 98 (186)
Q Consensus 30 ~LPkA~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~Lg 98 (186)
.++...|.+|++..- .+-.|+-+-...+......- ..-...+......++.-+|+.+++..+|..++
T Consensus 5 ~~t~~e~~~~~~~~d-~~g~i~~~eF~~~~~~~~~~-~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~ 71 (108)
T 1rro_A 5 ILSAEDIAAALQECQ-DPDTFEPQKFFQTSGLSKMS-ASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQ 71 (108)
T ss_dssp TSCHHHHHHHHHHTC-STTCCCHHHHHHHHSGGGSC-HHHHHHHHHHHCTTCSSEECTHHHHTGGGGTC
T ss_pred cCCHHHHHHHHHHcc-CCCCcCHHHHHHHHhcCccc-HHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHh
Confidence 366778888988864 34566654333222111000 11123456666677778999999999999984
No 152
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=30.44 E-value=1.3e+02 Score=20.40 Aligned_cols=29 Identities=24% Similarity=0.107 Sum_probs=22.2
Q ss_pred HHHHHHHhcCCCccCHHHHHHHHHHcCCc
Q 036580 72 EASDKCQREKRKTINGDDLLWAMTTLGFE 100 (186)
Q Consensus 72 ~A~~~a~~~kRKTIt~eDVl~AL~~LgF~ 100 (186)
.+......++.-.|+.+++..+|..++..
T Consensus 83 ~~F~~~D~d~~G~i~~~el~~~l~~~g~~ 111 (142)
T 2bl0_C 83 QAFRTFDPEGTGYIPKAALQDALLNLGDR 111 (142)
T ss_dssp HHHHHTCCSSCSCEEHHHHHHHHHHSSSC
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHHcCCC
Confidence 45555556677789999999999988754
No 153
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=30.08 E-value=1.2e+02 Score=19.95 Aligned_cols=65 Identities=6% Similarity=0.080 Sum_probs=38.2
Q ss_pred CchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHc
Q 036580 31 LPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTL 97 (186)
Q Consensus 31 LPkA~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~L 97 (186)
++...|.+|++..- .+..|+-+-...+......- ..-...+......++.-+|+.+++..+|..+
T Consensus 7 ~t~~e~~~~~~~~d-~~g~i~~~ef~~~~~~~~~~-~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 71 (110)
T 1pva_A 7 LKADDIKKALDAVK-AEGSFNHKKFFALVGLKAMS-ANDVKKVFKAIDADASGFIEEEELKFVLKSF 71 (110)
T ss_dssp SCHHHHHHHHHHTC-STTCCCHHHHHHHHTCTTSC-HHHHHHHHHHHCTTCSSSBCHHHHHTGGGGT
T ss_pred CCHHHHHHHHHhcC-CCCcCcHHHHHHHHccCcch-HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 56677888887753 34456543222211100000 1112456666677788899999999999998
No 154
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=29.90 E-value=52 Score=26.83 Aligned_cols=65 Identities=5% Similarity=0.018 Sum_probs=37.9
Q ss_pred CCchhHHHHHHHhhCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Q 036580 30 FLPIANVSRIMKKALP-ANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMT 95 (186)
Q Consensus 30 ~LPkA~V~RImK~alP-~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~ 95 (186)
.++...+..+++..+. ....++.++...|.+.+.--+..+.....+.+.. ...+|+.+||..++.
T Consensus 177 ~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~-~~~~i~~~~v~~~~~ 242 (373)
T 1jr3_A 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS-GDGQVSTQAVSAMLG 242 (373)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHHH-TTTCBCHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHh-cCCcccHHHHHHHhC
Confidence 3566667777765442 1357899998888877644333333322222222 245788888876654
No 155
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}
Probab=29.61 E-value=71 Score=22.60 Aligned_cols=28 Identities=18% Similarity=0.200 Sum_probs=18.6
Q ss_pred HHHHHHHhcCCCccCHHHHHHHHHHcCC
Q 036580 72 EASDKCQREKRKTINGDDLLWAMTTLGF 99 (186)
Q Consensus 72 ~A~~~a~~~kRKTIt~eDVl~AL~~LgF 99 (186)
.+......++.-+|+.+++..+|..+|+
T Consensus 44 ~~F~~~D~d~~G~I~~~el~~~l~~~g~ 71 (135)
T 3h4s_E 44 KGFSLLADPERHLITAESLRRNSGILGI 71 (135)
T ss_dssp HHHHHHSBTTTTBBCHHHHHHHGGGGTC
T ss_pred HHHHHHCCCCCCcCCHHHHHHHHHHhCC
Confidence 3444555666667777777777777775
No 156
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}
Probab=29.61 E-value=1.2e+02 Score=21.14 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=15.9
Q ss_pred HHhcCCCccCHHHHHHHHHHcCCc
Q 036580 77 CQREKRKTINGDDLLWAMTTLGFE 100 (186)
Q Consensus 77 a~~~kRKTIt~eDVl~AL~~LgF~ 100 (186)
...++.-+|+.+++..+|..+++.
T Consensus 36 ~D~~~~G~i~~~e~~~~l~~~~~~ 59 (166)
T 2aao_A 36 IDADKSGQITFEELKAGLKRVGAN 59 (166)
T ss_dssp HCTTCCSSBCHHHHHHHGGGGTCC
T ss_pred hCCCCCCeEeHHHHHHHHHHhCCC
Confidence 344556677777777777776654
No 157
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=29.49 E-value=60 Score=24.89 Aligned_cols=66 Identities=18% Similarity=0.112 Sum_probs=34.2
Q ss_pred ccCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcC-----------------CCccCHHHHHHHHHHc--CCcc---chHH
Q 036580 49 KISKDAKETVQECV-SEFISFVTGEASDKCQREK-----------------RKTINGDDLLWAMTTL--GFEE---YVEP 105 (186)
Q Consensus 49 rISkDA~~ai~k~a-eeFI~~Lts~A~~~a~~~k-----------------RKTIt~eDVl~AL~~L--gF~d---yi~~ 105 (186)
.--+||...|.+.- .-|.+.+...+...+-+.+ .+.|+.+++..++.++ .++| -++.
T Consensus 23 ~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~vl~~ldDl~lDiP~ 102 (152)
T 2ion_A 23 GDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPH 102 (152)
T ss_dssp CCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHhChHhccCccc
Confidence 33455665555542 3455555555555554432 4567777777776643 1111 2334
Q ss_pred HHHHHHHHH
Q 036580 106 LKVYLQRFR 114 (186)
Q Consensus 106 Lk~~L~~~r 114 (186)
.+.+|.+|-
T Consensus 103 A~~~la~~v 111 (152)
T 2ion_A 103 SYSVLERFV 111 (152)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 455555554
No 158
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=29.21 E-value=67 Score=20.33 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=24.3
Q ss_pred HHHHhcCCCccCHHHHHHHHHHcCCccchHHHHHHH
Q 036580 75 DKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYL 110 (186)
Q Consensus 75 ~~a~~~kRKTIt~eDVl~AL~~LgF~dyi~~Lk~~L 110 (186)
.....++.-+|+.+++..+|..+++.-=...++..+
T Consensus 30 ~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~l~ 65 (87)
T 1s6j_A 30 KMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLM 65 (87)
T ss_dssp HHHCTTCSSCEEHHHHHHHHHTTTSSCCHHHHHHHH
T ss_pred HHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 344566777899999999999988753333444333
No 159
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=28.95 E-value=27 Score=32.28 Aligned_cols=57 Identities=12% Similarity=0.238 Sum_probs=41.2
Q ss_pred HhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccC--HHHHHHHHHHc
Q 036580 41 KKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTIN--GDDLLWAMTTL 97 (186)
Q Consensus 41 K~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt--~eDVl~AL~~L 97 (186)
|+++.+.--|-+|.+.+|++||...=.||.......-...+++++. -.+|..+|..+
T Consensus 427 Ke~i~~~~ei~~ei~~a~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (530)
T 2zbk_B 427 KESIAEVENIEKEIKNALMEVARKLKQYLSEKRKEQEAKKKLLAYLKYIPEVSRSLATF 485 (530)
T ss_dssp CSCBCCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHT
T ss_pred ccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455678899999999999999999988766655555555544 35677777764
No 160
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=28.75 E-value=24 Score=25.53 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=19.7
Q ss_pred ccCHHHHHHHHHHcCCccchHHH
Q 036580 84 TINGDDLLWAMTTLGFEEYVEPL 106 (186)
Q Consensus 84 TIt~eDVl~AL~~LgF~dyi~~L 106 (186)
.-+.+||..-|+.+||.+|++..
T Consensus 19 ~Ws~edV~~WL~~~Gl~~Y~~~F 41 (97)
T 2d8c_A 19 YWSPKKVADWLLENAMPEYCEPL 41 (97)
T ss_dssp SCCTTHHHHHHHHTTCTTTTTTT
T ss_pred hCCHHHHHHHHHHcCCHHHHHHH
Confidence 45889999999999999998665
No 161
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=28.72 E-value=66 Score=24.96 Aligned_cols=37 Identities=19% Similarity=0.087 Sum_probs=30.0
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCccCHHHHHHHHHH
Q 036580 48 AKISKDAKETVQECVSEFISFVTGEASDKCQ-REKRKTINGDDLLWAMTT 96 (186)
Q Consensus 48 ~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~-~~kRKTIt~eDVl~AL~~ 96 (186)
..+|.++..+|++ |+..|+ .-+...|..+||+.||-+
T Consensus 97 ~~~S~~l~~vL~~------------A~~~A~l~~gd~~I~teHLLLALl~ 134 (171)
T 3zri_A 97 PAFSPLLVELLQE------------AWLLSSTELEQAELRSGAIFLAALT 134 (171)
T ss_dssp CEECHHHHHHHHH------------HHHHHHTTTCCSSBCHHHHHHHHHH
T ss_pred CCcCHHHHHHHHH------------HHHHHHHHcCCCEEcHHHHHHHHHh
Confidence 4577777776665 777888 889999999999999854
No 162
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=28.70 E-value=1.5e+02 Score=21.87 Aligned_cols=28 Identities=14% Similarity=-0.083 Sum_probs=19.6
Q ss_pred HHHHHHHhcCCCccCHHHHHHHHHHcCCc
Q 036580 72 EASDKCQREKRKTINGDDLLWAMTTLGFE 100 (186)
Q Consensus 72 ~A~~~a~~~kRKTIt~eDVl~AL~~LgF~ 100 (186)
.+......++.-+|+.+++..+| .+|..
T Consensus 130 ~~F~~~D~d~~G~Is~~El~~~l-~~g~~ 157 (196)
T 3dtp_E 130 NAFNLFDEGDGKCKEETLKRSLT-TWGEK 157 (196)
T ss_dssp HHHHTTCSSSSCCBHHHHHHHHH-HSSSC
T ss_pred HHHHHHCCCCCCcCcHHHHHHHH-HcCCC
Confidence 34444455667788888888888 88754
No 163
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=28.50 E-value=91 Score=21.85 Aligned_cols=42 Identities=17% Similarity=0.149 Sum_probs=28.7
Q ss_pred HHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036580 35 NVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQ 78 (186)
Q Consensus 35 ~V~RImK~alP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~ 78 (186)
.|..|+++.. ..-|+.|+...|+-|+++=+..|...-...++
T Consensus 11 ri~~I~~k~g--l~~~~~dv~~~iS~a~qeRLr~llekl~~~a~ 52 (75)
T 1h3o_A 11 RILEIGKKHG--ITELHPDVVSYVSHATQQRLQNLVEKISETAQ 52 (75)
T ss_dssp HHHHHHHTTT--CCEECTTHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHhcC--CCcCChhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3445666643 56799999999999999887776665544443
No 164
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=28.23 E-value=1.9e+02 Score=21.61 Aligned_cols=29 Identities=21% Similarity=0.168 Sum_probs=24.6
Q ss_pred HHHHHHHHhcCCCccCHHHHHHHHHHc----CCc
Q 036580 71 GEASDKCQREKRKTINGDDLLWAMTTL----GFE 100 (186)
Q Consensus 71 s~A~~~a~~~kRKTIt~eDVl~AL~~L----gF~ 100 (186)
..|..... ++.-+|+.+++..+|+.+ |+.
T Consensus 79 ~~aF~~fD-d~~G~I~~~El~~~l~~l~~~~G~~ 111 (174)
T 2i7a_A 79 QHVFQKVQ-TSPGVLLSSDLWKAIENTDFLRGIF 111 (174)
T ss_dssp HHHHHHHC-SBTTBEEGGGHHHHHHTCGGGTTCC
T ss_pred HHHHHHhc-CCCCcCCHHHHHHHHHHhHhccCCC
Confidence 45777777 888899999999999999 874
No 165
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=28.18 E-value=44 Score=23.50 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=20.1
Q ss_pred ccCHHHHHHHHHHc-CCccchHHHHH
Q 036580 84 TINGDDLLWAMTTL-GFEEYVEPLKV 108 (186)
Q Consensus 84 TIt~eDVl~AL~~L-gF~dyi~~Lk~ 108 (186)
.-+.+||..-|+.+ ||.+|++..++
T Consensus 16 ~Ws~edV~~wL~~l~gl~~y~~~F~~ 41 (89)
T 1kw4_A 16 SWSVDDVSNFIRELPGCQDYVDDFIQ 41 (89)
T ss_dssp GCCHHHHHHHHHTSTTCGGGHHHHHH
T ss_pred hCCHHHHHHHHHHCcChHHHHHHHHH
Confidence 45889999999999 99988765543
No 166
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=27.44 E-value=1e+02 Score=20.12 Aligned_cols=28 Identities=11% Similarity=0.223 Sum_probs=21.3
Q ss_pred HHHHHHhcCCCccCHHHHHHHHHHcCCc
Q 036580 73 ASDKCQREKRKTINGDDLLWAMTTLGFE 100 (186)
Q Consensus 73 A~~~a~~~kRKTIt~eDVl~AL~~LgF~ 100 (186)
+......++.-+|+.+++..+|..+|+.
T Consensus 32 ~F~~~D~d~~G~I~~~El~~~l~~~g~~ 59 (91)
T 2pmy_A 32 VFAACDANRSGRLEREEFRALCTELRVR 59 (91)
T ss_dssp HHHHHCTTCSSSEEHHHHHHHHHHTTCC
T ss_pred HHHHHCCCCCCCCcHHHHHHHHHHcCcC
Confidence 3445556677789999999999999853
No 167
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=27.38 E-value=25 Score=24.61 Aligned_cols=40 Identities=23% Similarity=0.383 Sum_probs=31.9
Q ss_pred HHHhcCCCccCHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHh
Q 036580 76 KCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGE 119 (186)
Q Consensus 76 ~a~~~kRKTIt~eDVl~AL~~LgF~dyi~~Lk~~L~~~re~~~~ 119 (186)
+...++++.++.+.|...|+.-|+. ..+..+.+||+..+=
T Consensus 29 I~~Ed~~kPlSD~~I~~~L~~~Gi~----IaRRTVaKYRe~l~I 68 (76)
T 2ahq_A 29 VENEDKRKPYSDQEIANILKEKGFK----VARRTVAKYREMLGI 68 (76)
T ss_dssp GGGCCSSSCCCHHHHHHHHTTTSSC----CCHHHHHHHHHHTC-
T ss_pred HHhcCCCCCCCHHHHHHHHHHcCCC----ccHHHHHHHHHHcCC
Confidence 4667789999999999999988776 567788889987653
No 168
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=27.21 E-value=1.1e+02 Score=21.18 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=24.1
Q ss_pred HHHhcCCCccCHHHHHHHHHHcCCccchHHHHHHHH
Q 036580 76 KCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQ 111 (186)
Q Consensus 76 ~a~~~kRKTIt~eDVl~AL~~LgF~dyi~~Lk~~L~ 111 (186)
....++.-+|+.+++..+|..+|+.--...+...+.
T Consensus 24 ~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 59 (153)
T 2ovk_B 24 MIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLK 59 (153)
T ss_dssp HHCCSTTTCCCHHHHHHHTTTTTSCCCHHHHHHHHH
T ss_pred HhCCCCCCeECHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 334556678889999888888887644444554443
No 169
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=26.79 E-value=88 Score=21.19 Aligned_cols=30 Identities=23% Similarity=0.178 Sum_probs=23.0
Q ss_pred HHHHHHHHhcCCCccCHHHHHHHHHHcCCc
Q 036580 71 GEASDKCQREKRKTINGDDLLWAMTTLGFE 100 (186)
Q Consensus 71 s~A~~~a~~~kRKTIt~eDVl~AL~~LgF~ 100 (186)
..+......++.-+|+.+++..+|..++..
T Consensus 79 ~~~F~~~D~d~~G~i~~~e~~~~l~~~g~~ 108 (145)
T 2bl0_B 79 LDAFRALDKEGNGTIQEAELRQLLLNLGDA 108 (145)
T ss_dssp HHHHHHHCSSSSSEEEHHHHHHHHHHSSSC
T ss_pred HHHHHHhCCCCCCeEcHHHHHHHHHHcCCC
Confidence 445555666777789999999999998754
No 170
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=26.71 E-value=1.5e+02 Score=20.18 Aligned_cols=41 Identities=10% Similarity=-0.065 Sum_probs=26.4
Q ss_pred HHHHHHHhcCCCccCHHHHHHHHHHcCCccchHHHHHHHHH
Q 036580 72 EASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQR 112 (186)
Q Consensus 72 ~A~~~a~~~kRKTIt~eDVl~AL~~LgF~dyi~~Lk~~L~~ 112 (186)
.+......++.-+|+.+++..+|..+|..-=...++..+..
T Consensus 88 ~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~ 128 (146)
T 2qac_A 88 KMFAHFDNNCTGYLTKSQMKNILTTWGDALTDQEAIDALNA 128 (146)
T ss_dssp HHHHTTCTTCSSEEEHHHHHHHHHHSSSCCCHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 34444556667789999999999998754223344444433
No 171
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=26.23 E-value=34 Score=29.56 Aligned_cols=17 Identities=24% Similarity=0.141 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHhhhh
Q 036580 106 LKVYLQRFREMEGEKMA 122 (186)
Q Consensus 106 Lk~~L~~~re~~~~K~~ 122 (186)
.++-|++.++..++|+.
T Consensus 162 keeml~d~k~~~k~krk 178 (279)
T 3p8c_D 162 KEKMLQDTEDKRKEKRK 178 (279)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 35666777777777655
No 172
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=26.00 E-value=1e+02 Score=19.40 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=11.7
Q ss_pred HhcCCCccCHHHHHHHHHHcC
Q 036580 78 QREKRKTINGDDLLWAMTTLG 98 (186)
Q Consensus 78 ~~~kRKTIt~eDVl~AL~~Lg 98 (186)
..++.-+|+.+++..+|..++
T Consensus 21 D~d~~G~i~~~el~~~l~~~g 41 (86)
T 2opo_A 21 DTNGDGKISSSELGDALKTLG 41 (86)
T ss_dssp CTTCSSEEEHHHHHHHHHTTT
T ss_pred CCCCCCCcCHHHHHHHHHHcC
Confidence 344445566666666665555
No 173
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=25.54 E-value=79 Score=24.91 Aligned_cols=63 Identities=10% Similarity=0.108 Sum_probs=38.6
Q ss_pred CchhHHHHHHHhhCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Q 036580 31 LPIANVSRIMKKALP-ANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMT 95 (186)
Q Consensus 31 LPkA~V~RImK~alP-~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~ 95 (186)
++...+..+++..+. ....|+.++...|.+.+.--+..+.......+.. ..+|+.+||..++.
T Consensus 161 ~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~--~~~i~~~~v~~~~~ 224 (319)
T 2chq_A 161 VPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAI--GEVVDADTIYQITA 224 (319)
T ss_dssp CCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHS--SSCBCHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHC
Confidence 556666666665442 2457899999888877654444433333333332 34799999887654
No 174
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=25.32 E-value=3.9e+02 Score=24.33 Aligned_cols=39 Identities=23% Similarity=0.187 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCCccCHHHHHHHHHHcCCccchHHHHHH
Q 036580 71 GEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVY 109 (186)
Q Consensus 71 s~A~~~a~~~kRKTIt~eDVl~AL~~LgF~dyi~~Lk~~ 109 (186)
.+|......++.-.|+.+++..+|..+|..--.+.++..
T Consensus 378 reAFk~fDkDgdG~IS~eELr~vL~~lGe~LSdeEIdeL 416 (440)
T 3u0k_A 378 REAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 416 (440)
T ss_dssp HHHHHHHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHH
Confidence 345666667777889999999999998864323334333
No 175
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}
Probab=25.28 E-value=1.1e+02 Score=18.02 Aligned_cols=26 Identities=4% Similarity=-0.018 Sum_probs=16.9
Q ss_pred HHHHHHHHhcCCCccCHHHHHHHHHH
Q 036580 71 GEASDKCQREKRKTINGDDLLWAMTT 96 (186)
Q Consensus 71 s~A~~~a~~~kRKTIt~eDVl~AL~~ 96 (186)
......+..++.-+|+.++++..+..
T Consensus 39 ~~~~~~~D~~~~g~i~~~ef~~~~~~ 64 (66)
T 3li6_A 39 QLIFKSIDADGNGEIDQNEFAKFYGS 64 (66)
T ss_dssp HHHHHHHCTTCSSSCCHHHHHHHHTC
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHh
Confidence 33444555666677888888877654
No 176
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=25.03 E-value=1.7e+02 Score=26.73 Aligned_cols=54 Identities=19% Similarity=0.226 Sum_probs=35.0
Q ss_pred CCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcCCccchHHHHHH
Q 036580 44 LPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVY 109 (186)
Q Consensus 44 lP~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~LgF~dyi~~Lk~~ 109 (186)
.|...++++|=+..|.+ +.+....++.-+|+.+++..+|+.||+.-=...++..
T Consensus 290 ePs~E~Lt~EEI~ELRE------------aF~~fDkDgdG~IS~eELk~aLrsLG~~~TeeEI~~L 343 (440)
T 3u0k_A 290 EPTRDQLTEEQIAEFKE------------AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDM 343 (440)
T ss_dssp CCBCBCCCHHHHHHHHH------------HHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HhhHhhhhHHHHHHHHH------------HHHHHcCCCCCEECHHHHHHHHHHcCCCCCHHHHHHH
Confidence 35556788866666655 3444566677788888888888888875333334333
No 177
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10
Probab=24.98 E-value=1.1e+02 Score=18.88 Aligned_cols=12 Identities=8% Similarity=0.027 Sum_probs=5.0
Q ss_pred CccCHHHHHHHH
Q 036580 83 KTINGDDLLWAM 94 (186)
Q Consensus 83 KTIt~eDVl~AL 94 (186)
-+|+.++.+..+
T Consensus 53 g~i~~~ef~~~~ 64 (78)
T 1k9u_A 53 GFIDFNEFISFC 64 (78)
T ss_dssp SSEEHHHHHHHH
T ss_pred CeEcHHHHHHHH
Confidence 334444444433
No 178
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=24.88 E-value=56 Score=27.35 Aligned_cols=15 Identities=33% Similarity=0.627 Sum_probs=13.3
Q ss_pred CccCHHHHHHHHHHc
Q 036580 83 KTINGDDLLWAMTTL 97 (186)
Q Consensus 83 KTIt~eDVl~AL~~L 97 (186)
..|+++||+.|++.|
T Consensus 113 ~~IS~dDi~rAik~L 127 (234)
T 3cuq_A 113 QDVSQDDLIRAIKKL 127 (234)
T ss_dssp SSCCHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHH
Confidence 589999999999865
No 179
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A
Probab=24.42 E-value=1.3e+02 Score=20.54 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=20.7
Q ss_pred HHHHHHHhcCCCccCHHHHHHHHHHcCCc
Q 036580 72 EASDKCQREKRKTINGDDLLWAMTTLGFE 100 (186)
Q Consensus 72 ~A~~~a~~~kRKTIt~eDVl~AL~~LgF~ 100 (186)
.+......++.-+|+.+++..+|..+|..
T Consensus 87 ~~F~~~D~d~~G~I~~~el~~~l~~~g~~ 115 (148)
T 1m45_A 87 KAFQVFDKESTGKVSVGDLRYMLTGLGEK 115 (148)
T ss_dssp HHHHTTCSSSSSEEEHHHHHHHHHHSTTC
T ss_pred HHHHHhCCCCCCcCCHHHHHHHHHHcCCC
Confidence 34444455666789999999999888754
No 180
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=24.14 E-value=1.3e+02 Score=27.95 Aligned_cols=38 Identities=16% Similarity=0.330 Sum_probs=30.8
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcC
Q 036580 49 KISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLG 98 (186)
Q Consensus 49 rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~Lg 98 (186)
+++..+..+|.. |...|...+...|.++||+.||=.-+
T Consensus 5 ~~t~~a~~~l~~------------A~~~A~~~~h~~i~~eHlLlaLl~~~ 42 (758)
T 3pxi_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVREG 42 (758)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHSC
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhcc
Confidence 677777777766 66678888999999999999997653
No 181
>1ng6_A Hypothetical protein YQEY; structural genomics, domain GATB/YQEY, PFAM02637, DUF186, PSI, protein structure initiative; 1.40A {Bacillus subtilis} SCOP: a.182.1.1
Probab=23.91 E-value=1.8e+02 Score=22.10 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=17.9
Q ss_pred CC-CccCHHHHHHHHHHcCCccchHHHHHHHHHHHH
Q 036580 81 KR-KTINGDDLLWAMTTLGFEEYVEPLKVYLQRFRE 115 (186)
Q Consensus 81 kR-KTIt~eDVl~AL~~LgF~dyi~~Lk~~L~~~re 115 (186)
.+ ..|++++|...++.+. ...++.++.|.+
T Consensus 40 ~~~~~lt~~~l~~li~~~~-----K~~ke~~~~~~~ 70 (148)
T 1ng6_A 40 LKKDSLTEDEELTVLSREL-----KQRKDSLQEFSN 70 (148)
T ss_dssp TTSSCCCHHHHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 44 6677777777776543 444555555543
No 182
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=23.59 E-value=1e+02 Score=25.65 Aligned_cols=37 Identities=24% Similarity=0.307 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCC------------------CccCHHHHHHHHHHcC
Q 036580 62 VSEFISFVTGEASDKCQREKR------------------KTINGDDLLWAMTTLG 98 (186)
Q Consensus 62 aeeFI~~Lts~A~~~a~~~kR------------------KTIt~eDVl~AL~~Lg 98 (186)
...|-..|+-.-.++|..-.. -.|+++||+.|++.|.
T Consensus 88 ~gdfy~eLavqIvEvC~~tr~~nGGli~l~el~~~~~r~~~IS~dDi~rAik~L~ 142 (233)
T 1u5t_A 88 VNDFYYEVCLKVIEICRQTKDMNGGVISFQELEKVHFRKLNVGLDDLEKSIDMLK 142 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSSCEEHHHHHHTTTTTTTCCHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHhhcCCCHHHHHHHHHHhh
Confidence 378888999998888875432 2899999999999763
No 183
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=23.22 E-value=96 Score=22.86 Aligned_cols=47 Identities=17% Similarity=0.070 Sum_probs=25.1
Q ss_pred cCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcC-----------------CCccCHHHHHHHHHH
Q 036580 50 ISKDAKETVQECV-SEFISFVTGEASDKCQREK-----------------RKTINGDDLLWAMTT 96 (186)
Q Consensus 50 ISkDA~~ai~k~a-eeFI~~Lts~A~~~a~~~k-----------------RKTIt~eDVl~AL~~ 96 (186)
--+||...|.+-- .-|.+.+...+...+-+.+ .+.|+.+++..++.+
T Consensus 22 D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~ 86 (129)
T 2nsz_A 22 DISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 86 (129)
T ss_dssp CHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHH
Confidence 3355555555542 3455555555555555433 345666666666554
No 184
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=22.78 E-value=2e+02 Score=20.12 Aligned_cols=53 Identities=11% Similarity=0.152 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcCCc---------------cchHHHHHHHHHHHHHH
Q 036580 65 FISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFE---------------EYVEPLKVYLQRFREME 117 (186)
Q Consensus 65 FI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~LgF~---------------dyi~~Lk~~L~~~re~~ 117 (186)
|+..|...+.+...++-++..++.--+.+|+..-+. .....|.+.|.+|.+..
T Consensus 18 f~~wL~e~~~~a~~r~~k~~~~Y~KA~~sLk~~P~~i~s~~e~~~L~giG~ki~~~L~e~L~~~c~en 85 (87)
T 2kp7_A 18 FVRWLTEWRDEAASRGRHTRFVFQKALRSLQRYPLPLRSGKEAKILQHFGDRLCRMLDEKLKQHLASG 85 (87)
T ss_dssp HHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHCCSCCCSHHHHHTCTTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhCCCCCCCHHHHHHhhcccHHHHHHHHHHHHHHHHHc
Confidence 444444444433355556666777777777764332 23557778888887653
No 185
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=22.61 E-value=1.6e+02 Score=20.28 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=8.4
Q ss_pred hcCCCccCHHHHHHHHH
Q 036580 79 REKRKTINGDDLLWAMT 95 (186)
Q Consensus 79 ~~kRKTIt~eDVl~AL~ 95 (186)
.++..+|+.++++.++.
T Consensus 70 ~~~~g~i~~~eF~~~~~ 86 (161)
T 3fwb_A 70 SEGRHLMKYDDFYIVMG 86 (161)
T ss_dssp TTSSSCEEHHHHHHHHH
T ss_pred cCCCCeEeHHHHHHHHH
Confidence 33444555555555544
No 186
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=22.50 E-value=1.6e+02 Score=20.11 Aligned_cols=48 Identities=15% Similarity=0.030 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCccCHHHHHHHHHHcCCccchHHHHH
Q 036580 52 KDAKETVQECVSEFISFVTGEASDKCQREK-RKTINGDDLLWAMTTLGFEEYVEPLKV 108 (186)
Q Consensus 52 kDA~~ai~k~aeeFI~~Lts~A~~~a~~~k-RKTIt~eDVl~AL~~LgF~dyi~~Lk~ 108 (186)
.++++.+.+.-..|- ....++ --+|+.+++..+|+.+|+.--...++.
T Consensus 7 ~~~~~~~~~l~~~F~---------~~D~d~~~G~i~~~el~~~l~~~g~~~~~~~~~~ 55 (146)
T 2qac_A 7 IQQLEEKVDESDVRI---------YFNEKSSGGKISIDNASYNARKLGLAPSSIDEKK 55 (146)
T ss_dssp HHHHHHHSCHHHHHH---------HHHHHCBTTBEEHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------HhCccCCCCcccHHHHHHHHHHhCCCCCHHHHHH
Confidence 444555555555553 233445 668899999999998887543333433
No 187
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=22.41 E-value=1.8e+02 Score=19.52 Aligned_cols=29 Identities=28% Similarity=0.367 Sum_probs=21.2
Q ss_pred HHHHHHHhcCCCccCHHHHHHHHHHcCCc
Q 036580 72 EASDKCQREKRKTINGDDLLWAMTTLGFE 100 (186)
Q Consensus 72 ~A~~~a~~~kRKTIt~eDVl~AL~~LgF~ 100 (186)
.+......++.-+|+.+++..+|..+|..
T Consensus 89 ~~F~~~D~d~~G~i~~~el~~~l~~~g~~ 117 (149)
T 2mys_C 89 EGLRVFDKEGNGTVMGAELRHVLATLGEK 117 (149)
T ss_pred HHHHHhCCCCCceEcHHHHHHHHHHhCCC
Confidence 34555556667789999999999888753
No 188
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand (helix-loop-helix) calcium binding protein, four-HEL domain, protein engineering; HET: FME; 1.44A {Bos taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A 1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A 1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Probab=21.90 E-value=75 Score=19.37 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=13.7
Q ss_pred HhcCC-CccCHHHHHHHHHHcCC
Q 036580 78 QREKR-KTINGDDLLWAMTTLGF 99 (186)
Q Consensus 78 ~~~kR-KTIt~eDVl~AL~~LgF 99 (186)
..++. -+|+.+++..+|+.++.
T Consensus 16 D~d~~~G~i~~~el~~~l~~~g~ 38 (76)
T 1qx2_A 16 AKEGDPNQISKEELKLVMQTLGP 38 (76)
T ss_dssp TSSSCTTSEEHHHHHHHHHHHGG
T ss_pred ccCCCcCeECHHHHHHHHHHhCC
Confidence 44455 56777777777766653
No 189
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=21.73 E-value=2.3e+02 Score=24.86 Aligned_cols=56 Identities=9% Similarity=0.167 Sum_probs=39.0
Q ss_pred CCchhHHHHHHHhhCC------CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHc
Q 036580 30 FLPIANVSRIMKKALP------ANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTL 97 (186)
Q Consensus 30 ~LPkA~V~RImK~alP------~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~L 97 (186)
.+....|++.+...+. ....+|..+..+|.. |+..|..-+...|..+||+.||-.-
T Consensus 54 gvd~~~l~~~l~~~l~~~~~~~~~~~~S~~~~~vL~~------------A~~~A~~~g~~~I~teHLLlaLl~~ 115 (468)
T 3pxg_A 54 GLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIEL------------SMDEARKLGHSYVGTEHILLGLIRE 115 (468)
T ss_dssp TCCHHHHHHHHHTTSCCCCTTCSSCEECHHHHHHHHH------------HHHHHHTTTCSSBCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhcccCCCCCCCCCCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHHhc
Confidence 3455666666665552 124577777766655 6677788889999999999998654
No 190
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=21.63 E-value=92 Score=21.17 Aligned_cols=38 Identities=24% Similarity=0.100 Sum_probs=24.9
Q ss_pred HHHHHHHhcCCCccCHHHHHHHHHHcCCccchHHHHHH
Q 036580 72 EASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVY 109 (186)
Q Consensus 72 ~A~~~a~~~kRKTIt~eDVl~AL~~LgF~dyi~~Lk~~ 109 (186)
.+......++.-+|+.+++..+|..++..--...++..
T Consensus 80 ~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 117 (143)
T 3j04_B 80 NAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEM 117 (143)
T ss_dssp HHHTTSCSSSCCCCCTTTHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHCCCCCCeEcHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34444445677789999999999988865333334333
No 191
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=21.45 E-value=2.3e+02 Score=20.82 Aligned_cols=30 Identities=17% Similarity=0.191 Sum_probs=24.1
Q ss_pred HHHHHHHHhcCCCccCHHHHHHHHHHcCCc
Q 036580 71 GEASDKCQREKRKTINGDDLLWAMTTLGFE 100 (186)
Q Consensus 71 s~A~~~a~~~kRKTIt~eDVl~AL~~LgF~ 100 (186)
..+......++.-.|+.+++..+|..+++.
T Consensus 85 ~~~F~~~D~d~dG~Is~~El~~~l~~~g~~ 114 (188)
T 1s6i_A 85 VSAFSYFDKDGSGYITLDEIQQACKDFGLD 114 (188)
T ss_dssp HHHHHHTTTTCSSEEEHHHHHHTTTTTTCC
T ss_pred HHHHHHHCCCCCCcCcHHHHHHHHHHcCCC
Confidence 456666677778899999999999988865
No 192
>2lnz_A Ubiquitin-like protein MDY2; dimerization, homodimerization, protein binding; NMR {Saccharomyces cerevisiae}
Probab=21.45 E-value=76 Score=21.78 Aligned_cols=27 Identities=11% Similarity=0.262 Sum_probs=17.9
Q ss_pred CCCCCcccccCCchhHHHHHHHhhCCC
Q 036580 20 RELSPREQDRFLPIANVSRIMKKALPA 46 (186)
Q Consensus 20 ~e~~~re~d~~LPkA~V~RImK~alP~ 46 (186)
........++.+|...|..++|..+.+
T Consensus 18 ~~~~a~p~~l~VPWd~Ie~lL~n~l~n 44 (64)
T 2lnz_A 18 SPAPAPPQELTVPWDDIEALLKNNFEN 44 (64)
T ss_dssp -------CCCCCCHHHHHHHHHHHTTT
T ss_pred CCCCCCCccccCCHHHHHHHHHHHhcC
Confidence 334446678889999999999999843
No 193
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=21.25 E-value=1.3e+02 Score=27.22 Aligned_cols=53 Identities=17% Similarity=0.152 Sum_probs=34.5
Q ss_pred CcccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHcCC
Q 036580 47 NAKISKDAKETVQECVS---------EFISFVTGEASDKCQRE--KRKTINGDDLLWAMTTLGF 99 (186)
Q Consensus 47 ~~rISkDA~~ai~k~ae---------eFI~~Lts~A~~~a~~~--kRKTIt~eDVl~AL~~LgF 99 (186)
...|+.++...|.+..+ ..|..+...|...+... ++.+|+.+||.++|..--|
T Consensus 280 ~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~~~~ 343 (543)
T 3m6a_A 280 NLQLRDQAILDIIRYYTREAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGKRIF 343 (543)
T ss_dssp GCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCSCCS
T ss_pred cccCCHHHHHHHHHhCChhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCCccc
Confidence 45688888888766443 55666655555544433 5668999999888765433
No 194
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=21.19 E-value=2.2e+02 Score=19.98 Aligned_cols=71 Identities=8% Similarity=0.130 Sum_probs=43.9
Q ss_pred CchhHHHHHHHhhCCCCcccCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcCCccchHH
Q 036580 31 LPIANVSRIMKKALPANAKISKDAKETVQEC-----VSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEP 105 (186)
Q Consensus 31 LPkA~V~RImK~alP~~~rISkDA~~ai~k~-----aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~LgF~dyi~~ 105 (186)
+|...++++|++.. +|.--.+.|... .|-.+..|- ...+..|++ =+.++++.+|+.+++-.-.+.
T Consensus 10 ~~~~~wK~~~R~LG-----lse~~Id~I~~~~~~d~~Eq~~qmL~----~W~~~~g~~-a~~~~Li~~Lr~~~l~~~Ad~ 79 (86)
T 3oq9_A 10 MTIQEAKKFARENN-----IKEGKIDEIMHDSIQDTAEQKVQLLL----CWYQSHGKS-DAYQDLIKGLKKAECRRTLDK 79 (86)
T ss_dssp SCHHHHHHHHHTTT-----SCHHHHHHHHHTCTTCCTTHHHHHHH----HHHHHSCSS-SHHHHHHHHHHHTTCSSHHHH
T ss_pred cCHHHHHHHHHHcC-----CCHhHHHHHHHhCCCChHHHHHHHHH----HHHHHhCcc-hHHHHHHHHHHHccchhHHHH
Confidence 67888888888763 333333333311 122222221 234444444 388999999999999988888
Q ss_pred HHHHHH
Q 036580 106 LKVYLQ 111 (186)
Q Consensus 106 Lk~~L~ 111 (186)
+++.|.
T Consensus 80 I~~~l~ 85 (86)
T 3oq9_A 80 FQDMVQ 85 (86)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 877664
No 195
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Probab=21.14 E-value=2.3e+02 Score=20.20 Aligned_cols=29 Identities=17% Similarity=0.073 Sum_probs=20.9
Q ss_pred HHHHHHHhcCCCccCHHHHHHHHHHcCCc
Q 036580 72 EASDKCQREKRKTINGDDLLWAMTTLGFE 100 (186)
Q Consensus 72 ~A~~~a~~~kRKTIt~eDVl~AL~~LgF~ 100 (186)
.+......++.-+|+.+++..+|..+|..
T Consensus 117 ~~F~~~D~d~~G~I~~~El~~~l~~~g~~ 145 (195)
T 1qv0_A 117 AVFDIFDKDGSGTITLDEWKAYGKISGIS 145 (195)
T ss_dssp HHHHHTC----CEECHHHHHHHHHHHSSC
T ss_pred HHHHHhcCCCCCcCcHHHHHHHHHHhCCC
Confidence 66677777788899999999999998864
No 196
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A
Probab=21.11 E-value=2.8e+02 Score=21.12 Aligned_cols=67 Identities=19% Similarity=0.107 Sum_probs=43.6
Q ss_pred cCCchhHHHHHHHhhCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHcCCc
Q 036580 29 RFLPIANVSRIMKKALP-ANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFE 100 (186)
Q Consensus 29 ~~LPkA~V~RImK~alP-~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~~LgF~ 100 (186)
..++...+.++++..-. .+..|+-+-...+.... .-...+......++.-+|+.+++..+|..+|..
T Consensus 82 ~~~~~~~~~~l~~~~D~d~dg~I~~~EF~~~~~~~-----~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~ 149 (220)
T 3sjs_A 82 IRLSPQTALRMMRIFDTDFNGHISFYEFMAMYKFM-----ELAYNLFVMNARARSGTLEPHEILPALQQLGFY 149 (220)
T ss_dssp BCCCHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHH-----HHHHHHHHHHCCSSTTEECHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHH-----HHHHHHHHHHCCCCCCCCcHHHHHHHHHHhCCC
Confidence 34677788888887642 24467654333222221 123456666777788899999999999988864
No 197
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated, SEN membrane targeting, EF-hand, cell projection, cilium; 2.00A {Trypanosoma cruzi}
Probab=21.04 E-value=2.1e+02 Score=21.63 Aligned_cols=25 Identities=12% Similarity=0.210 Sum_probs=19.6
Q ss_pred HHHhcCCCccCHHHHHHHHHH-cCCc
Q 036580 76 KCQREKRKTINGDDLLWAMTT-LGFE 100 (186)
Q Consensus 76 ~a~~~kRKTIt~eDVl~AL~~-LgF~ 100 (186)
....++.-+|+.+++..+|.. +|+.
T Consensus 56 ~~D~d~dG~I~~~El~~~l~~~lg~~ 81 (219)
T 3cs1_A 56 KFDKNETGKLCYDEVYSGCLEVLKLD 81 (219)
T ss_dssp HHCTTCSSCBCHHHHHHHHHHTTCGG
T ss_pred HhCCCCCCcCcHHHHHHHHHHHhCCC
Confidence 445567779999999999987 7875
No 198
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=20.79 E-value=23 Score=23.49 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=17.2
Q ss_pred cCHHHHHHHHHHcCCccchHHH
Q 036580 85 INGDDLLWAMTTLGFEEYVEPL 106 (186)
Q Consensus 85 It~eDVl~AL~~LgF~dyi~~L 106 (186)
=+.+||..-|+.+||.+|++..
T Consensus 7 Ws~~~V~~WL~~~gl~~y~~~F 28 (74)
T 2gle_A 7 WSVQQVSHWLVGLSLDQYVSEF 28 (74)
T ss_dssp CCSGGGHHHHHHTTTHHHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHH
Confidence 3678899999999988876644
No 199
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=20.74 E-value=1.5e+02 Score=19.90 Aligned_cols=14 Identities=21% Similarity=0.211 Sum_probs=6.4
Q ss_pred CCCccCHHHHHHHH
Q 036580 81 KRKTINGDDLLWAM 94 (186)
Q Consensus 81 kRKTIt~eDVl~AL 94 (186)
+..+|+.++++..+
T Consensus 60 ~~g~i~~~ef~~~~ 73 (147)
T 4ds7_A 60 GNHAIEFSEFLALM 73 (147)
T ss_dssp SSSEEEHHHHHHHH
T ss_pred CCCcCcHHHHHHHH
Confidence 33444555444444
No 200
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=20.50 E-value=1.3e+02 Score=20.76 Aligned_cols=17 Identities=12% Similarity=-0.075 Sum_probs=14.0
Q ss_pred CCCccCHHHHHHHHHHc
Q 036580 81 KRKTINGDDLLWAMTTL 97 (186)
Q Consensus 81 kRKTIt~eDVl~AL~~L 97 (186)
+|-+.+..+|...++.|
T Consensus 41 ~rF~p~~~~IKk~IE~L 57 (77)
T 3tdu_C 41 SRFKPRVPVIKKCIDIL 57 (77)
T ss_dssp TTCCCCHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHH
Confidence 67888999998888765
No 201
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Probab=20.42 E-value=1.1e+02 Score=26.59 Aligned_cols=63 Identities=6% Similarity=0.120 Sum_probs=41.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-CHHHHHHHHHHcCCccchHHHHHHHHHHH
Q 036580 50 ISKDAKETVQECVSEFISFVTGEASDKCQREKRKTI-NGDDLLWAMTTLGFEEYVEPLKVYLQRFR 114 (186)
Q Consensus 50 ISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTI-t~eDVl~AL~~LgF~dyi~~Lk~~L~~~r 114 (186)
++.|=.+.+....+..-.++.....+.-... + .. .-++.+.-|+.+|+++|++..+..+++|+
T Consensus 471 ~t~~e~~~~~~~~~~i~~~~~~~~~~~i~g~-~-~~~~wd~y~~~l~~~g~~~~~~~~q~~yd~~~ 534 (535)
T 3omb_A 471 MDPSDATKLNTNNAEIFNTTMQKTATWMSKG-G-IDEEWDAYCKQLDSIGLQESTKIWQKWYDTYT 534 (535)
T ss_dssp SCHHHHHHHHHHHHHHTTTHHHHHHHHHHHC-C-HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhHHHHHHHHHHHHHhCC-C-cHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhh
Confidence 6666666665555444444444444433332 2 22 25677888999999999999999999996
No 202
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=20.30 E-value=2.1e+02 Score=19.28 Aligned_cols=16 Identities=19% Similarity=0.156 Sum_probs=7.3
Q ss_pred cCCCccCHHHHHHHHH
Q 036580 80 EKRKTINGDDLLWAMT 95 (186)
Q Consensus 80 ~kRKTIt~eDVl~AL~ 95 (186)
++..+|+.++.+..+.
T Consensus 59 ~~~g~i~~~eF~~~~~ 74 (153)
T 3ox6_A 59 NLGGHVDFDDFVELMG 74 (153)
T ss_dssp TSTTCCCHHHHHHHHH
T ss_pred CCCccCcHHHHHHHHH
Confidence 3344455555444443
No 203
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=20.20 E-value=1.3e+02 Score=23.76 Aligned_cols=63 Identities=5% Similarity=0.097 Sum_probs=36.7
Q ss_pred CchhHHHHHHHhhCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Q 036580 31 LPIANVSRIMKKALP-ANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMT 95 (186)
Q Consensus 31 LPkA~V~RImK~alP-~~~rISkDA~~ai~k~aeeFI~~Lts~A~~~a~~~kRKTIt~eDVl~AL~ 95 (186)
++...+..+++..+. ....|+.++...|.+.+.--+..+.......+. ...+|+.+||..++.
T Consensus 169 l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~--~~~~i~~~~v~~~~~ 232 (327)
T 1iqp_A 169 LRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAA--LDKKITDENVFMVAS 232 (327)
T ss_dssp CCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCSEECHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHC
Confidence 556666776665432 245799999988888764433333332222221 233688888876654
Done!