Query 036584
Match_columns 919
No_of_seqs 444 out of 4140
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 03:28:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036584.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036584hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.1E-91 4.5E-96 825.0 46.6 829 3-900 2-866 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.3E-59 5E-64 585.6 51.7 660 199-917 180-905 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.3E-43 2.8E-48 381.5 17.9 279 208-488 1-285 (287)
4 KOG0444 Cytoskeletal regulator 99.9 3.1E-25 6.8E-30 236.3 -4.7 313 559-917 55-374 (1255)
5 PLN00113 leucine-rich repeat r 99.9 7.5E-22 1.6E-26 248.6 15.8 334 559-916 118-486 (968)
6 PLN00113 leucine-rich repeat r 99.9 2.2E-21 4.7E-26 244.4 17.5 239 609-866 138-388 (968)
7 KOG4194 Membrane glycoprotein 99.8 1.7E-20 3.8E-25 199.6 3.4 307 580-912 124-446 (873)
8 KOG4194 Membrane glycoprotein 99.8 4.2E-20 9.2E-25 196.7 6.2 310 580-916 77-427 (873)
9 KOG0444 Cytoskeletal regulator 99.8 8.2E-21 1.8E-25 202.9 -4.8 267 602-911 46-322 (1255)
10 PLN03210 Resistant to P. syrin 99.7 1.9E-16 4.1E-21 199.6 16.8 311 580-917 531-881 (1153)
11 KOG0472 Leucine-rich repeat pr 99.7 6.9E-19 1.5E-23 179.8 -7.9 150 604-770 130-284 (565)
12 KOG0618 Serine/threonine phosp 99.6 6.5E-17 1.4E-21 182.0 -4.5 91 583-691 47-137 (1081)
13 KOG0472 Leucine-rich repeat pr 99.6 1.4E-17 2.9E-22 170.4 -10.2 233 580-843 67-307 (565)
14 KOG0618 Serine/threonine phosp 99.6 1.6E-16 3.5E-21 178.9 -4.1 102 809-916 383-487 (1081)
15 PRK04841 transcriptional regul 99.5 2.5E-12 5.5E-17 161.5 27.3 299 201-538 12-333 (903)
16 PRK15387 E3 ubiquitin-protein 99.4 5.8E-13 1.3E-17 155.8 12.9 250 612-916 202-456 (788)
17 PRK00411 cdc6 cell division co 99.4 7.7E-11 1.7E-15 132.7 28.4 312 200-526 27-374 (394)
18 TIGR02928 orc1/cdc6 family rep 99.3 9.7E-10 2.1E-14 122.5 29.1 301 200-514 12-351 (365)
19 COG2909 MalT ATP-dependent tra 99.3 3.5E-10 7.6E-15 128.4 24.2 301 202-539 18-340 (894)
20 PRK15387 E3 ubiquitin-protein 99.3 6.7E-12 1.5E-16 147.0 10.8 216 611-896 242-458 (788)
21 PRK15370 E3 ubiquitin-protein 99.2 9.4E-12 2E-16 146.8 8.4 61 612-687 179-239 (754)
22 KOG0617 Ras suppressor protein 99.2 2.7E-13 5.8E-18 123.3 -4.1 148 580-743 32-184 (264)
23 TIGR03015 pepcterm_ATPase puta 99.2 2E-09 4.4E-14 114.5 22.9 192 213-413 29-242 (269)
24 PF01637 Arch_ATPase: Archaeal 99.2 7.1E-11 1.5E-15 122.9 11.0 197 205-408 1-233 (234)
25 KOG0617 Ras suppressor protein 99.2 1E-12 2.2E-17 119.6 -2.8 161 638-831 28-194 (264)
26 TIGR00635 ruvB Holliday juncti 99.1 4.8E-10 1E-14 121.4 12.0 278 203-514 4-290 (305)
27 PRK00080 ruvB Holliday junctio 99.1 1.5E-09 3.2E-14 118.4 15.6 279 202-514 24-311 (328)
28 PRK15370 E3 ubiquitin-protein 99.1 4.5E-10 9.8E-15 132.7 12.0 91 580-696 198-288 (754)
29 KOG4658 Apoptotic ATPase [Sign 99.0 1.8E-10 4E-15 138.1 6.0 292 580-899 522-847 (889)
30 COG3899 Predicted ATPase [Gene 99.0 1.2E-08 2.5E-13 123.3 19.3 314 204-536 1-385 (849)
31 PF05729 NACHT: NACHT domain 99.0 3.8E-09 8.1E-14 103.3 11.6 141 227-378 1-163 (166)
32 cd00116 LRR_RI Leucine-rich re 98.9 5.4E-11 1.2E-15 130.3 -3.0 70 601-676 13-91 (319)
33 PTZ00112 origin recognition co 98.9 3.4E-07 7.4E-12 105.2 25.5 303 198-514 750-1087(1164)
34 KOG4237 Extracellular matrix p 98.9 9.5E-11 2.1E-15 120.8 -3.5 126 580-721 66-199 (498)
35 cd00116 LRR_RI Leucine-rich re 98.9 8E-10 1.7E-14 121.0 2.8 91 580-676 22-118 (319)
36 PRK06893 DNA replication initi 98.8 5.7E-08 1.2E-12 99.7 13.1 154 226-413 39-207 (229)
37 COG2256 MGS1 ATPase related to 98.8 3.9E-08 8.4E-13 103.0 11.7 169 203-407 30-210 (436)
38 KOG3207 Beta-tubulin folding c 98.8 7.4E-10 1.6E-14 116.0 -1.2 39 638-676 116-156 (505)
39 PRK13342 recombination factor 98.8 2.3E-07 5.1E-12 104.2 18.5 177 203-412 12-199 (413)
40 KOG1259 Nischarin, modulator o 98.7 4.7E-09 1E-13 104.3 1.2 134 728-873 280-414 (490)
41 PF13173 AAA_14: AAA domain 98.7 6.2E-08 1.3E-12 89.7 8.6 121 226-370 2-127 (128)
42 KOG4237 Extracellular matrix p 98.6 4E-09 8.6E-14 109.1 -0.8 125 557-697 65-194 (498)
43 COG3903 Predicted ATPase [Gene 98.6 2E-07 4.4E-12 98.5 10.8 290 226-539 14-316 (414)
44 COG1474 CDC6 Cdc6-related prot 98.6 7E-06 1.5E-10 89.4 22.8 289 202-514 16-335 (366)
45 PRK04195 replication factor C 98.6 4.5E-06 9.7E-11 95.9 21.2 243 203-487 14-271 (482)
46 PF13401 AAA_22: AAA domain; P 98.6 3.4E-07 7.4E-12 85.4 9.8 115 226-346 4-125 (131)
47 TIGR03420 DnaA_homol_Hda DnaA 98.5 7E-07 1.5E-11 92.2 12.6 167 210-412 24-204 (226)
48 PRK14961 DNA polymerase III su 98.5 2.5E-06 5.4E-11 94.1 17.5 194 203-407 16-218 (363)
49 PRK07003 DNA polymerase III su 98.5 5.2E-06 1.1E-10 95.5 20.0 198 203-410 16-222 (830)
50 PTZ00202 tuzin; Provisional 98.5 9.6E-06 2.1E-10 86.9 20.5 164 200-378 259-434 (550)
51 PRK12402 replication factor C 98.5 1.6E-06 3.4E-11 95.6 15.7 197 203-408 15-225 (337)
52 PRK05564 DNA polymerase III su 98.5 3.5E-06 7.5E-11 91.3 17.3 177 203-407 4-188 (313)
53 KOG3207 Beta-tubulin folding c 98.5 1.8E-08 4E-13 105.8 -1.0 205 683-896 113-339 (505)
54 PF13191 AAA_16: AAA ATPase do 98.5 2.3E-07 5E-12 92.5 6.4 50 204-253 1-51 (185)
55 PF14580 LRR_9: Leucine-rich r 98.4 1.6E-07 3.5E-12 90.4 4.4 73 611-696 19-93 (175)
56 PRK14949 DNA polymerase III su 98.4 3.8E-06 8.3E-11 98.6 16.1 197 203-409 16-220 (944)
57 PF05496 RuvB_N: Holliday junc 98.4 3.5E-06 7.5E-11 82.9 13.2 179 201-413 22-225 (233)
58 cd00009 AAA The AAA+ (ATPases 98.4 1.9E-06 4.2E-11 82.1 11.4 123 206-348 1-131 (151)
59 PRK14963 DNA polymerase III su 98.4 3.4E-06 7.3E-11 96.0 14.7 192 203-406 14-214 (504)
60 PRK14960 DNA polymerase III su 98.4 5.8E-06 1.2E-10 94.2 16.3 195 203-407 15-217 (702)
61 PRK12323 DNA polymerase III su 98.4 4.3E-06 9.4E-11 94.9 14.6 202 203-409 16-225 (700)
62 PRK00440 rfc replication facto 98.4 6.7E-06 1.5E-10 89.9 15.5 180 203-407 17-201 (319)
63 PF14516 AAA_35: AAA-like doma 98.4 6.1E-05 1.3E-09 81.8 22.6 205 201-416 9-246 (331)
64 PLN03025 replication factor C 98.4 5.5E-06 1.2E-10 89.9 14.3 182 203-407 13-198 (319)
65 KOG2120 SCF ubiquitin ligase, 98.4 1.4E-08 3E-13 101.3 -5.4 138 725-866 227-371 (419)
66 KOG1909 Ran GTPase-activating 98.4 1.1E-07 2.4E-12 97.5 0.9 138 731-870 156-310 (382)
67 KOG1259 Nischarin, modulator o 98.3 1E-07 2.2E-12 95.0 0.3 106 580-697 181-313 (490)
68 PRK08727 hypothetical protein; 98.3 5.7E-06 1.2E-10 85.1 13.2 148 226-407 41-202 (233)
69 PRK14957 DNA polymerase III su 98.3 1.1E-05 2.4E-10 91.9 16.6 182 203-409 16-221 (546)
70 PRK13341 recombination factor 98.3 7.1E-06 1.5E-10 97.0 15.6 171 203-406 28-214 (725)
71 PF14580 LRR_9: Leucine-rich r 98.3 3.6E-07 7.9E-12 88.0 3.8 85 580-683 18-103 (175)
72 PRK14962 DNA polymerase III su 98.3 1.6E-05 3.4E-10 89.8 17.3 200 203-413 14-223 (472)
73 TIGR02397 dnaX_nterm DNA polym 98.3 1.9E-05 4.2E-10 87.7 18.0 182 203-410 14-219 (355)
74 PRK14956 DNA polymerase III su 98.3 4.6E-06 9.9E-11 92.4 12.6 194 203-406 18-219 (484)
75 PRK06645 DNA polymerase III su 98.3 1.9E-05 4.1E-10 89.5 17.7 197 203-406 21-226 (507)
76 PRK07471 DNA polymerase III su 98.3 1.2E-05 2.5E-10 88.0 15.5 200 201-409 17-238 (365)
77 KOG2028 ATPase related to the 98.3 9.4E-06 2E-10 83.5 13.3 174 204-405 139-332 (554)
78 PRK08084 DNA replication initi 98.3 1.1E-05 2.4E-10 83.1 14.2 153 226-412 45-212 (235)
79 TIGR00678 holB DNA polymerase 98.3 2.5E-05 5.4E-10 77.8 16.2 90 308-405 95-187 (188)
80 cd01128 rho_factor Transcripti 98.3 1.7E-06 3.8E-11 88.9 7.7 94 226-320 16-114 (249)
81 PRK09112 DNA polymerase III su 98.3 2.2E-05 4.8E-10 85.3 16.5 201 201-410 21-241 (351)
82 PRK07940 DNA polymerase III su 98.3 2.3E-05 5E-10 86.3 16.8 191 203-409 5-213 (394)
83 KOG0532 Leucine-rich repeat (L 98.3 5.6E-08 1.2E-12 105.3 -3.5 106 634-742 89-199 (722)
84 PRK14964 DNA polymerase III su 98.3 1.8E-05 3.8E-10 88.9 15.9 193 203-406 13-214 (491)
85 TIGR01242 26Sp45 26S proteasom 98.2 1.2E-05 2.6E-10 89.1 14.1 175 201-403 120-328 (364)
86 PRK05896 DNA polymerase III su 98.2 6.2E-06 1.3E-10 93.9 11.9 197 203-410 16-222 (605)
87 PRK07994 DNA polymerase III su 98.2 1.4E-05 3.1E-10 92.4 14.8 196 203-409 16-220 (647)
88 PRK14955 DNA polymerase III su 98.2 9.6E-06 2.1E-10 90.6 13.1 201 203-407 16-226 (397)
89 PRK14951 DNA polymerase III su 98.2 2.5E-05 5.5E-10 90.3 16.3 197 203-409 16-225 (618)
90 TIGR02903 spore_lon_C ATP-depe 98.2 1.5E-05 3.2E-10 93.5 14.4 174 203-379 154-367 (615)
91 PRK09087 hypothetical protein; 98.2 2.8E-05 6.1E-10 79.3 14.3 141 226-411 44-197 (226)
92 PRK08691 DNA polymerase III su 98.2 2.3E-05 5E-10 90.3 14.8 196 203-408 16-219 (709)
93 PRK14958 DNA polymerase III su 98.2 2.8E-05 6E-10 88.9 15.5 195 203-408 16-219 (509)
94 KOG0532 Leucine-rich repeat (L 98.2 1.7E-07 3.6E-12 101.7 -2.5 148 602-768 89-241 (722)
95 PRK05642 DNA replication initi 98.2 2E-05 4.2E-10 81.2 12.9 154 226-413 45-212 (234)
96 PRK14087 dnaA chromosomal repl 98.1 4.8E-05 1E-09 85.9 16.4 167 226-411 141-321 (450)
97 COG4886 Leucine-rich repeat (L 98.1 2.3E-06 4.9E-11 96.6 5.7 175 607-822 112-290 (394)
98 KOG2120 SCF ubiquitin ligase, 98.1 5.5E-08 1.2E-12 97.1 -6.4 180 711-896 186-377 (419)
99 PRK09376 rho transcription ter 98.1 4.3E-06 9.3E-11 89.4 7.1 102 214-321 158-268 (416)
100 PRK08903 DnaA regulatory inact 98.1 2.7E-05 5.8E-10 80.3 12.9 169 207-413 23-203 (227)
101 PF00308 Bac_DnaA: Bacterial d 98.1 5.8E-05 1.3E-09 76.7 15.0 164 225-411 33-210 (219)
102 COG4886 Leucine-rich repeat (L 98.1 2E-06 4.4E-11 97.0 4.9 99 580-696 115-214 (394)
103 TIGR02881 spore_V_K stage V sp 98.1 2.3E-05 4.9E-10 82.5 12.4 157 204-380 7-193 (261)
104 PRK09111 DNA polymerase III su 98.1 5.7E-05 1.2E-09 87.6 16.6 200 202-409 23-233 (598)
105 PRK14970 DNA polymerase III su 98.1 6E-05 1.3E-09 83.9 16.2 180 203-406 17-206 (367)
106 KOG1909 Ran GTPase-activating 98.1 4.7E-07 1E-11 92.9 -0.8 68 603-676 22-102 (382)
107 PRK07764 DNA polymerase III su 98.1 7.3E-05 1.6E-09 89.7 17.3 193 203-406 15-218 (824)
108 PRK14969 DNA polymerase III su 98.1 8.2E-05 1.8E-09 85.7 16.9 193 203-406 16-217 (527)
109 PRK14952 DNA polymerase III su 98.1 8.7E-05 1.9E-09 85.6 17.0 198 203-411 13-222 (584)
110 COG2255 RuvB Holliday junction 98.1 0.0001 2.2E-09 74.1 15.0 176 202-411 25-225 (332)
111 PRK14959 DNA polymerase III su 98.1 8.5E-05 1.8E-09 85.3 16.4 198 203-413 16-225 (624)
112 TIGR02880 cbbX_cfxQ probable R 98.1 9.4E-05 2E-09 78.5 15.8 133 228-380 60-210 (284)
113 PF13855 LRR_8: Leucine rich r 98.1 3.6E-06 7.9E-11 66.3 3.7 57 611-676 1-59 (61)
114 PRK14950 DNA polymerase III su 98.0 5E-05 1.1E-09 89.0 14.1 199 203-411 16-223 (585)
115 PRK14954 DNA polymerase III su 98.0 0.00013 2.8E-09 84.8 16.9 200 203-405 16-224 (620)
116 PRK07133 DNA polymerase III su 98.0 0.00014 3E-09 84.9 16.9 190 203-408 18-218 (725)
117 PRK03992 proteasome-activating 98.0 7.6E-05 1.6E-09 83.0 14.1 173 202-403 130-337 (389)
118 PHA02544 44 clamp loader, smal 98.0 6.1E-05 1.3E-09 82.0 13.1 147 203-376 21-171 (316)
119 CHL00181 cbbX CbbX; Provisiona 98.0 0.00019 4E-09 76.1 15.9 134 227-380 60-211 (287)
120 PRK14953 DNA polymerase III su 98.0 0.00024 5.2E-09 80.8 17.6 194 203-410 16-221 (486)
121 PF05621 TniB: Bacterial TniB 98.0 0.00044 9.4E-09 71.7 17.7 193 212-408 46-260 (302)
122 TIGR03345 VI_ClpV1 type VI sec 98.0 8.2E-05 1.8E-09 90.5 14.4 180 202-403 186-390 (852)
123 PF12799 LRR_4: Leucine Rich r 97.9 9.6E-06 2.1E-10 58.4 3.8 40 643-684 1-40 (44)
124 KOG2543 Origin recognition com 97.9 0.00019 4.1E-09 75.2 14.0 170 201-376 4-191 (438)
125 PRK06305 DNA polymerase III su 97.9 0.00029 6.4E-09 79.6 16.8 194 202-405 16-218 (451)
126 TIGR00767 rho transcription te 97.9 4.9E-05 1.1E-09 81.9 9.5 95 226-321 168-267 (415)
127 PRK14971 DNA polymerase III su 97.9 0.00033 7.1E-09 82.0 17.1 175 203-406 17-219 (614)
128 TIGR02639 ClpA ATP-dependent C 97.9 0.00012 2.6E-09 88.5 13.6 155 203-378 182-358 (731)
129 KOG2227 Pre-initiation complex 97.9 0.00031 6.8E-09 75.5 14.9 177 201-381 148-341 (529)
130 PRK08451 DNA polymerase III su 97.9 0.00048 1.1E-08 78.3 17.4 197 203-409 14-218 (535)
131 PRK14088 dnaA chromosomal repl 97.8 0.0004 8.6E-09 78.4 16.6 158 226-407 130-303 (440)
132 TIGR03689 pup_AAA proteasome A 97.8 0.00015 3.3E-09 81.9 13.0 161 203-379 182-379 (512)
133 PRK06620 hypothetical protein; 97.8 0.00021 4.6E-09 72.2 12.5 135 227-408 45-188 (214)
134 KOG0531 Protein phosphatase 1, 97.8 2.4E-06 5.2E-11 96.6 -1.8 172 607-821 91-267 (414)
135 PF00004 AAA: ATPase family as 97.8 0.00013 2.9E-09 67.8 10.2 21 229-249 1-21 (132)
136 COG1373 Predicted ATPase (AAA+ 97.8 0.0003 6.6E-09 78.2 14.4 241 212-514 26-271 (398)
137 PRK00149 dnaA chromosomal repl 97.8 0.00028 6E-09 80.5 14.4 158 225-407 147-320 (450)
138 PRK05707 DNA polymerase III su 97.8 0.00083 1.8E-08 72.5 17.0 171 225-409 21-203 (328)
139 TIGR00362 DnaA chromosomal rep 97.8 0.00053 1.1E-08 77.3 16.1 160 226-408 136-309 (405)
140 PRK14948 DNA polymerase III su 97.8 0.00045 9.8E-09 80.9 15.7 200 203-411 16-224 (620)
141 PTZ00361 26 proteosome regulat 97.8 0.00017 3.7E-09 80.3 11.6 172 203-403 183-389 (438)
142 PLN03150 hypothetical protein; 97.8 2.9E-05 6.3E-10 91.9 5.8 78 602-688 433-511 (623)
143 PRK14965 DNA polymerase III su 97.7 0.00052 1.1E-08 80.1 15.8 194 203-409 16-221 (576)
144 PRK06647 DNA polymerase III su 97.7 0.001 2.2E-08 77.1 17.9 196 203-408 16-219 (563)
145 KOG0989 Replication factor C, 97.7 0.00015 3.3E-09 73.8 9.4 184 202-404 35-225 (346)
146 KOG2982 Uncharacterized conser 97.7 1.3E-05 2.9E-10 80.4 1.8 81 759-840 197-286 (418)
147 PRK14086 dnaA chromosomal repl 97.7 0.00064 1.4E-08 77.9 15.1 159 226-407 314-486 (617)
148 PRK11331 5-methylcytosine-spec 97.7 5.3E-05 1.1E-09 83.1 6.1 119 203-332 175-298 (459)
149 PTZ00454 26S protease regulato 97.7 0.00031 6.8E-09 77.7 11.9 174 202-404 144-352 (398)
150 PRK07399 DNA polymerase III su 97.7 0.0014 3E-08 70.4 16.4 196 204-409 5-221 (314)
151 CHL00095 clpC Clp protease ATP 97.7 0.00022 4.7E-09 87.3 11.4 154 203-377 179-353 (821)
152 KOG4341 F-box protein containi 97.6 1.8E-06 3.9E-11 90.6 -5.6 125 784-909 318-456 (483)
153 PRK05563 DNA polymerase III su 97.6 0.0013 2.7E-08 76.6 16.8 192 203-407 16-218 (559)
154 KOG4341 F-box protein containi 97.6 3.1E-06 6.8E-11 88.9 -4.2 134 783-917 291-438 (483)
155 KOG0991 Replication factor C, 97.6 0.00036 7.8E-09 67.8 10.0 44 203-248 27-70 (333)
156 PF12799 LRR_4: Leucine Rich r 97.6 4.4E-05 9.6E-10 55.0 2.9 41 611-660 1-41 (44)
157 CHL00176 ftsH cell division pr 97.6 0.00052 1.1E-08 80.4 13.1 173 203-402 183-387 (638)
158 PRK12422 chromosomal replicati 97.6 0.00088 1.9E-08 75.4 14.4 153 226-403 141-307 (445)
159 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00058 1.3E-08 83.9 14.0 155 203-378 173-349 (852)
160 PRK11034 clpA ATP-dependent Cl 97.6 0.00035 7.6E-09 83.4 11.6 156 203-378 186-362 (758)
161 PRK10865 protein disaggregatio 97.6 0.00069 1.5E-08 82.9 14.2 154 203-378 178-354 (857)
162 PRK10787 DNA-binding ATP-depen 97.6 0.00069 1.5E-08 81.6 13.8 161 202-378 321-506 (784)
163 smart00382 AAA ATPases associa 97.5 0.00051 1.1E-08 64.6 9.4 88 227-322 3-91 (148)
164 PLN03150 hypothetical protein; 97.5 0.00014 3E-09 86.2 6.6 77 612-697 419-496 (623)
165 PF13855 LRR_8: Leucine rich r 97.5 0.00011 2.4E-09 57.7 3.8 60 581-655 1-61 (61)
166 PRK08116 hypothetical protein; 97.4 0.00059 1.3E-08 71.6 9.9 101 227-346 115-220 (268)
167 PF05673 DUF815: Protein of un 97.4 0.0045 9.8E-08 62.2 15.4 105 200-333 24-133 (249)
168 PRK10536 hypothetical protein; 97.4 0.0011 2.4E-08 67.4 11.0 132 203-347 55-213 (262)
169 TIGR00763 lon ATP-dependent pr 97.4 0.0027 5.9E-08 77.4 16.4 161 202-378 319-505 (775)
170 KOG0531 Protein phosphatase 1, 97.4 1.9E-05 4.2E-10 89.2 -2.1 195 608-845 69-267 (414)
171 TIGR01241 FtsH_fam ATP-depende 97.4 0.0012 2.5E-08 76.5 12.1 174 203-403 55-260 (495)
172 PRK15386 type III secretion pr 97.4 0.00059 1.3E-08 74.2 8.8 64 608-686 49-113 (426)
173 PRK08769 DNA polymerase III su 97.4 0.005 1.1E-07 65.9 15.7 94 308-409 112-208 (319)
174 CHL00195 ycf46 Ycf46; Provisio 97.3 0.0027 5.9E-08 72.0 14.2 176 203-403 228-429 (489)
175 COG0593 DnaA ATPase involved i 97.3 0.0052 1.1E-07 67.1 15.3 136 225-382 112-261 (408)
176 COG3267 ExeA Type II secretory 97.3 0.016 3.4E-07 58.2 17.2 181 225-411 50-247 (269)
177 KOG3665 ZYG-1-like serine/thre 97.3 0.0001 2.2E-09 87.1 2.3 103 580-697 121-226 (699)
178 COG0466 Lon ATP-dependent Lon 97.3 0.0007 1.5E-08 76.9 8.6 163 201-379 321-509 (782)
179 KOG0735 AAA+-type ATPase [Post 97.3 0.0048 1E-07 69.8 14.8 174 203-402 408-608 (952)
180 COG1222 RPT1 ATP-dependent 26S 97.3 0.0032 7E-08 65.8 12.4 172 203-403 151-357 (406)
181 TIGR01243 CDC48 AAA family ATP 97.3 0.0039 8.5E-08 75.8 15.3 172 203-403 453-657 (733)
182 PRK06090 DNA polymerase III su 97.3 0.041 8.9E-07 58.9 21.1 196 213-431 13-220 (319)
183 KOG0741 AAA+-type ATPase [Post 97.3 0.0087 1.9E-07 65.4 15.8 144 225-399 537-704 (744)
184 TIGR02640 gas_vesic_GvpN gas v 97.3 0.0073 1.6E-07 63.5 15.3 53 213-274 12-64 (262)
185 TIGR02639 ClpA ATP-dependent C 97.2 0.0013 2.8E-08 79.6 10.8 116 203-333 454-579 (731)
186 TIGR00602 rad24 checkpoint pro 97.2 0.0017 3.7E-08 75.6 11.0 49 201-249 82-133 (637)
187 PRK08058 DNA polymerase III su 97.2 0.0056 1.2E-07 66.6 14.2 165 205-377 7-181 (329)
188 TIGR01243 CDC48 AAA family ATP 97.2 0.0041 8.8E-08 75.7 14.4 176 203-405 178-383 (733)
189 PRK06871 DNA polymerase III su 97.2 0.018 4E-07 61.7 17.4 178 213-406 12-200 (325)
190 KOG0733 Nuclear AAA ATPase (VC 97.2 0.0035 7.7E-08 69.6 12.0 173 203-403 190-396 (802)
191 KOG2004 Mitochondrial ATP-depe 97.2 0.009 2E-07 67.8 15.2 162 201-378 409-596 (906)
192 KOG0734 AAA+-type ATPase conta 97.2 0.006 1.3E-07 66.7 13.4 148 203-378 304-484 (752)
193 COG5238 RNA1 Ran GTPase-activa 97.1 0.00017 3.6E-09 71.8 1.3 64 607-676 26-102 (388)
194 PF13177 DNA_pol3_delta2: DNA 97.1 0.0042 9.2E-08 59.8 10.9 148 209-366 3-162 (162)
195 COG1223 Predicted ATPase (AAA+ 97.1 0.006 1.3E-07 60.6 11.6 177 198-402 116-318 (368)
196 PRK08118 topology modulation p 97.1 0.00025 5.5E-09 68.7 2.2 34 228-261 3-37 (167)
197 PF04665 Pox_A32: Poxvirus A32 97.1 0.0043 9.4E-08 62.9 11.0 36 228-265 15-50 (241)
198 PF10443 RNA12: RNA12 protein; 97.1 0.064 1.4E-06 58.5 20.4 208 208-427 1-298 (431)
199 PRK09361 radB DNA repair and r 97.1 0.0023 5E-08 65.8 9.1 102 214-319 11-117 (225)
200 TIGR02237 recomb_radB DNA repa 97.1 0.002 4.2E-08 65.5 8.4 97 219-319 5-107 (209)
201 COG0470 HolB ATPase involved i 97.0 0.0075 1.6E-07 66.0 13.6 144 204-367 2-170 (325)
202 KOG1859 Leucine-rich repeat pr 97.0 1.6E-05 3.4E-10 89.1 -7.8 184 636-844 102-290 (1096)
203 PLN00020 ribulose bisphosphate 97.0 0.013 2.7E-07 62.6 13.8 25 225-249 147-171 (413)
204 PRK12608 transcription termina 97.0 0.0037 8.1E-08 67.3 10.1 107 211-320 119-231 (380)
205 PRK08181 transposase; Validate 97.0 0.00099 2.1E-08 69.5 5.6 36 227-264 107-142 (269)
206 PRK12377 putative replication 97.0 0.0019 4E-08 66.6 7.6 38 226-265 101-138 (248)
207 KOG0730 AAA+-type ATPase [Post 97.0 0.012 2.6E-07 66.5 14.2 172 204-403 435-637 (693)
208 KOG0731 AAA+-type ATPase conta 97.0 0.0044 9.5E-08 72.1 11.2 177 203-406 311-521 (774)
209 KOG3665 ZYG-1-like serine/thre 97.0 0.0003 6.5E-09 83.1 1.8 103 559-676 122-230 (699)
210 cd01123 Rad51_DMC1_radA Rad51_ 97.0 0.0033 7.1E-08 65.2 9.3 103 216-319 9-125 (235)
211 PHA00729 NTP-binding motif con 97.0 0.0046 9.9E-08 62.0 9.7 33 215-249 8-40 (226)
212 KOG1514 Origin recognition com 96.9 0.032 7E-07 63.6 17.1 170 201-380 394-591 (767)
213 cd01393 recA_like RecA is a b 96.9 0.0063 1.4E-07 62.6 11.1 105 214-319 7-124 (226)
214 PRK07993 DNA polymerase III su 96.9 0.032 6.9E-07 60.5 16.3 179 213-407 12-202 (334)
215 KOG1859 Leucine-rich repeat pr 96.9 3.6E-05 7.9E-10 86.2 -6.3 102 606-721 182-290 (1096)
216 cd01120 RecA-like_NTPases RecA 96.9 0.0072 1.6E-07 58.4 10.5 40 228-269 1-40 (165)
217 PRK06526 transposase; Provisio 96.9 0.0015 3.3E-08 67.7 5.8 23 227-249 99-121 (254)
218 PRK07952 DNA replication prote 96.9 0.0044 9.5E-08 63.7 8.8 112 214-345 87-203 (244)
219 PRK15386 type III secretion pr 96.8 0.0042 9.1E-08 67.7 8.8 30 858-890 156-186 (426)
220 PRK10865 protein disaggregatio 96.8 0.012 2.5E-07 72.3 13.7 118 203-332 568-695 (857)
221 PRK09183 transposase/IS protei 96.8 0.0039 8.4E-08 65.2 8.0 23 227-249 103-125 (259)
222 TIGR03346 chaperone_ClpB ATP-d 96.8 0.019 4.2E-07 70.7 15.3 132 203-346 565-717 (852)
223 cd01394 radB RadB. The archaea 96.8 0.0087 1.9E-07 61.2 10.4 61 214-278 7-67 (218)
224 KOG4579 Leucine-rich repeat (L 96.7 0.00036 7.7E-09 62.4 -0.2 88 582-686 54-141 (177)
225 KOG2228 Origin recognition com 96.7 0.034 7.4E-07 57.8 13.8 174 201-378 22-219 (408)
226 PF00448 SRP54: SRP54-type pro 96.7 0.0069 1.5E-07 60.2 8.8 90 226-318 1-92 (196)
227 COG2812 DnaX DNA polymerase II 96.7 0.0088 1.9E-07 67.4 10.6 188 203-403 16-214 (515)
228 KOG0728 26S proteasome regulat 96.7 0.015 3.4E-07 57.3 10.8 149 205-378 148-331 (404)
229 KOG2982 Uncharacterized conser 96.7 0.00058 1.3E-08 69.0 1.2 84 580-676 70-156 (418)
230 PRK07261 topology modulation p 96.7 0.0044 9.5E-08 60.4 7.3 22 228-249 2-23 (171)
231 COG5238 RNA1 Ran GTPase-activa 96.7 0.00041 9E-09 69.1 0.0 95 580-683 29-135 (388)
232 TIGR03345 VI_ClpV1 type VI sec 96.7 0.0051 1.1E-07 75.2 9.3 48 202-249 565-619 (852)
233 PF07693 KAP_NTPase: KAP famil 96.7 0.051 1.1E-06 59.4 16.4 72 211-282 4-81 (325)
234 CHL00095 clpC Clp protease ATP 96.7 0.0082 1.8E-07 73.7 11.1 132 203-346 509-661 (821)
235 PRK06964 DNA polymerase III su 96.7 0.033 7.2E-07 60.2 14.3 92 308-409 131-225 (342)
236 PF01695 IstB_IS21: IstB-like 96.7 0.0011 2.4E-08 64.9 2.7 38 226-265 47-84 (178)
237 cd01133 F1-ATPase_beta F1 ATP 96.6 0.005 1.1E-07 63.8 7.5 93 226-320 69-174 (274)
238 KOG0744 AAA+-type ATPase [Post 96.6 0.016 3.4E-07 59.7 10.7 81 226-320 177-261 (423)
239 PRK04132 replication factor C 96.6 0.044 9.5E-07 65.9 16.2 155 234-410 574-732 (846)
240 TIGR02012 tigrfam_recA protein 96.6 0.0064 1.4E-07 64.8 8.3 100 213-319 41-143 (321)
241 PRK06921 hypothetical protein; 96.6 0.0091 2E-07 62.6 9.1 37 226-264 117-154 (266)
242 smart00763 AAA_PrkA PrkA AAA d 96.6 0.0015 3.3E-08 70.0 3.2 58 204-261 52-118 (361)
243 COG4608 AppF ABC-type oligopep 96.6 0.013 2.8E-07 59.7 9.7 129 226-357 39-180 (268)
244 PRK08939 primosomal protein Dn 96.6 0.0055 1.2E-07 65.5 7.5 116 208-345 136-259 (306)
245 PRK06835 DNA replication prote 96.6 0.0061 1.3E-07 65.6 7.9 37 227-265 184-220 (329)
246 PF14532 Sigma54_activ_2: Sigm 96.6 0.0032 6.8E-08 59.1 5.0 44 206-249 1-44 (138)
247 PRK11034 clpA ATP-dependent Cl 96.5 0.014 3.1E-07 69.9 11.5 115 203-332 458-582 (758)
248 KOG4579 Leucine-rich repeat (L 96.5 0.00089 1.9E-08 59.9 1.0 82 605-697 47-129 (177)
249 PRK09354 recA recombinase A; P 96.5 0.0087 1.9E-07 64.3 8.6 100 213-319 46-148 (349)
250 PRK08699 DNA polymerase III su 96.5 0.033 7.1E-07 60.2 13.1 88 308-405 112-202 (325)
251 COG1484 DnaC DNA replication p 96.5 0.0056 1.2E-07 63.6 6.9 74 226-320 105-178 (254)
252 cd00983 recA RecA is a bacter 96.5 0.0077 1.7E-07 64.2 8.0 100 213-319 41-143 (325)
253 KOG1969 DNA replication checkp 96.5 0.0058 1.2E-07 69.5 7.3 75 225-321 325-399 (877)
254 PF02562 PhoH: PhoH-like prote 96.5 0.0059 1.3E-07 60.5 6.6 53 207-263 4-56 (205)
255 PRK04296 thymidine kinase; Pro 96.5 0.0033 7.2E-08 62.4 5.0 113 227-348 3-117 (190)
256 cd01131 PilT Pilus retraction 96.5 0.0066 1.4E-07 60.8 6.9 112 227-351 2-113 (198)
257 TIGR02974 phageshock_pspF psp 96.5 0.071 1.5E-06 57.9 15.3 45 205-249 1-45 (329)
258 PF08423 Rad51: Rad51; InterP 96.4 0.012 2.6E-07 61.4 8.9 105 213-318 25-142 (256)
259 COG2884 FtsE Predicted ATPase 96.4 0.041 9E-07 52.6 11.3 59 297-356 143-206 (223)
260 PF13207 AAA_17: AAA domain; P 96.4 0.0024 5.1E-08 58.4 3.1 22 228-249 1-22 (121)
261 KOG1644 U2-associated snRNP A' 96.4 0.0053 1.2E-07 59.0 5.4 95 772-866 50-148 (233)
262 KOG0739 AAA+-type ATPase [Post 96.4 0.043 9.4E-07 55.8 11.9 92 204-320 134-236 (439)
263 TIGR02902 spore_lonB ATP-depen 96.4 0.01 2.3E-07 68.7 9.0 44 203-248 65-108 (531)
264 KOG0733 Nuclear AAA ATPase (VC 96.4 0.02 4.3E-07 63.9 10.4 151 226-403 545-718 (802)
265 KOG0743 AAA+-type ATPase [Post 96.3 0.09 1.9E-06 57.3 14.8 153 227-416 236-417 (457)
266 PF13671 AAA_33: AAA domain; P 96.3 0.0071 1.5E-07 57.1 6.0 21 228-248 1-21 (143)
267 PTZ00494 tuzin-like protein; P 96.3 0.29 6.4E-06 53.2 18.3 167 201-378 369-544 (664)
268 KOG2035 Replication factor C, 96.3 0.039 8.5E-07 55.7 11.1 226 205-450 15-282 (351)
269 COG0542 clpA ATP-binding subun 96.3 0.009 2E-07 70.1 7.8 154 202-377 169-345 (786)
270 PRK10733 hflB ATP-dependent me 96.3 0.04 8.7E-07 65.6 13.3 130 227-380 186-337 (644)
271 PRK15455 PrkA family serine pr 96.2 0.0034 7.4E-08 70.7 3.6 45 204-248 77-125 (644)
272 cd00561 CobA_CobO_BtuR ATP:cor 96.2 0.015 3.2E-07 55.2 7.1 119 227-348 3-139 (159)
273 PLN03186 DNA repair protein RA 96.1 0.029 6.2E-07 60.8 10.1 70 213-283 110-183 (342)
274 PRK06067 flagellar accessory p 96.1 0.026 5.7E-07 58.3 9.5 102 213-319 12-130 (234)
275 TIGR03877 thermo_KaiC_1 KaiC d 96.1 0.029 6.2E-07 58.1 9.7 61 213-277 8-68 (237)
276 TIGR02858 spore_III_AA stage I 96.1 0.07 1.5E-06 55.8 12.6 134 211-352 97-234 (270)
277 cd03214 ABC_Iron-Siderophores_ 96.1 0.042 9E-07 54.2 10.4 124 226-352 25-163 (180)
278 PRK05541 adenylylsulfate kinas 96.1 0.036 7.8E-07 54.4 9.9 37 225-263 6-42 (176)
279 TIGR01817 nifA Nif-specific re 96.1 0.099 2.1E-06 61.3 15.2 49 201-249 194-242 (534)
280 PF13604 AAA_30: AAA domain; P 96.1 0.036 7.7E-07 55.4 9.8 106 226-347 18-131 (196)
281 PRK05022 anaerobic nitric oxid 96.0 0.11 2.5E-06 60.2 15.1 64 201-266 185-248 (509)
282 COG0468 RecA RecA/RadA recombi 96.0 0.035 7.6E-07 57.8 9.7 98 216-319 50-151 (279)
283 KOG2123 Uncharacterized conser 96.0 0.0005 1.1E-08 68.7 -3.6 61 606-676 36-98 (388)
284 TIGR02238 recomb_DMC1 meiotic 96.0 0.031 6.6E-07 60.0 9.6 70 213-283 83-156 (313)
285 PRK05973 replicative DNA helic 96.0 0.075 1.6E-06 54.2 11.7 149 225-381 63-227 (237)
286 cd01121 Sms Sms (bacterial rad 96.0 0.025 5.4E-07 62.1 8.9 98 213-318 69-167 (372)
287 TIGR02239 recomb_RAD51 DNA rep 96.0 0.035 7.6E-07 59.7 9.8 69 213-282 83-155 (316)
288 PRK11608 pspF phage shock prot 96.0 0.028 6E-07 61.1 9.0 46 203-248 6-51 (326)
289 COG0542 clpA ATP-binding subun 95.9 0.031 6.6E-07 65.9 9.7 120 202-333 490-619 (786)
290 PRK15429 formate hydrogenlyase 95.9 0.1 2.3E-06 63.1 14.8 47 203-249 376-422 (686)
291 COG1121 ZnuC ABC-type Mn/Zn tr 95.9 0.053 1.1E-06 55.3 10.2 125 226-352 30-204 (254)
292 COG0464 SpoVK ATPases of the A 95.9 0.063 1.4E-06 62.3 12.4 153 204-380 243-425 (494)
293 TIGR02236 recomb_radA DNA repa 95.9 0.046 1E-06 59.2 10.5 67 214-281 83-153 (310)
294 cd03238 ABC_UvrA The excision 95.9 0.066 1.4E-06 52.2 10.5 116 226-351 21-153 (176)
295 PRK11889 flhF flagellar biosyn 95.9 0.1 2.2E-06 56.7 12.6 89 225-319 240-330 (436)
296 PLN03187 meiotic recombination 95.9 0.058 1.3E-06 58.3 11.0 70 213-283 113-186 (344)
297 cd03115 SRP The signal recogni 95.9 0.063 1.4E-06 52.5 10.5 22 228-249 2-23 (173)
298 PRK06696 uridine kinase; Valid 95.9 0.0079 1.7E-07 61.6 4.2 42 208-249 3-45 (223)
299 COG1875 NYN ribonuclease and A 95.9 0.019 4E-07 60.4 6.7 138 205-346 226-387 (436)
300 cd03247 ABCC_cytochrome_bd The 95.9 0.04 8.6E-07 54.2 9.0 121 226-352 28-162 (178)
301 PTZ00035 Rad51 protein; Provis 95.8 0.069 1.5E-06 58.0 11.4 69 213-282 105-177 (337)
302 cd01125 repA Hexameric Replica 95.8 0.074 1.6E-06 55.1 11.2 145 228-372 3-198 (239)
303 PRK07667 uridine kinase; Provi 95.8 0.012 2.6E-07 58.7 5.1 38 212-249 3-40 (193)
304 KOG2739 Leucine-rich acidic nu 95.8 0.0035 7.5E-08 62.9 1.1 64 603-676 35-101 (260)
305 KOG1644 U2-associated snRNP A' 95.8 0.011 2.4E-07 56.9 4.4 103 786-890 42-149 (233)
306 PRK04301 radA DNA repair and r 95.8 0.053 1.1E-06 58.8 10.4 68 213-281 89-160 (317)
307 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.8 0.092 2E-06 49.5 10.7 103 226-352 26-132 (144)
308 COG2607 Predicted ATPase (AAA+ 95.8 0.044 9.6E-07 54.3 8.4 114 203-347 60-183 (287)
309 PF13481 AAA_25: AAA domain; P 95.8 0.0089 1.9E-07 59.8 3.9 93 227-319 33-151 (193)
310 PRK04328 hypothetical protein; 95.7 0.037 7.9E-07 57.6 8.4 52 214-267 11-62 (249)
311 PF00560 LRR_1: Leucine Rich R 95.7 0.0047 1E-07 37.0 1.0 21 644-664 1-21 (22)
312 TIGR00064 ftsY signal recognit 95.7 0.072 1.6E-06 56.0 10.6 91 225-319 71-164 (272)
313 COG0572 Udk Uridine kinase [Nu 95.7 0.018 3.8E-07 57.1 5.4 79 225-310 7-85 (218)
314 cd03230 ABC_DR_subfamily_A Thi 95.7 0.08 1.7E-06 51.8 10.2 122 226-353 26-161 (173)
315 PRK05800 cobU adenosylcobinami 95.6 0.015 3.2E-07 56.4 4.8 82 228-318 3-85 (170)
316 COG1618 Predicted nucleotide k 95.6 0.0093 2E-07 55.2 3.1 23 227-249 6-28 (179)
317 cd03216 ABC_Carb_Monos_I This 95.6 0.066 1.4E-06 51.7 9.2 115 226-352 26-147 (163)
318 PRK04040 adenylate kinase; Pro 95.6 0.028 6E-07 55.6 6.6 22 227-248 3-24 (188)
319 PRK06002 fliI flagellum-specif 95.6 0.064 1.4E-06 59.7 9.9 92 226-320 165-265 (450)
320 PRK14722 flhF flagellar biosyn 95.5 0.082 1.8E-06 57.7 10.5 89 226-320 137-226 (374)
321 cd03223 ABCD_peroxisomal_ALDP 95.5 0.19 4E-06 48.8 12.1 24 226-249 27-50 (166)
322 PRK08233 hypothetical protein; 95.5 0.037 7.9E-07 54.7 7.3 24 226-249 3-26 (182)
323 PRK10867 signal recognition pa 95.5 0.077 1.7E-06 59.3 10.3 24 225-248 99-122 (433)
324 COG1136 SalX ABC-type antimicr 95.5 0.16 3.5E-06 51.0 11.6 55 300-354 151-210 (226)
325 TIGR01359 UMP_CMP_kin_fam UMP- 95.5 0.096 2.1E-06 51.7 10.1 21 228-248 1-21 (183)
326 TIGR00382 clpX endopeptidase C 95.5 0.049 1.1E-06 60.3 8.6 47 202-248 76-138 (413)
327 cd03222 ABC_RNaseL_inhibitor T 95.4 0.16 3.6E-06 49.5 11.3 23 226-248 25-47 (177)
328 COG1066 Sms Predicted ATP-depe 95.4 0.065 1.4E-06 57.6 8.9 99 212-319 79-178 (456)
329 TIGR03499 FlhF flagellar biosy 95.4 0.055 1.2E-06 57.4 8.6 40 225-265 193-233 (282)
330 PRK13695 putative NTPase; Prov 95.4 0.037 7.9E-07 54.2 6.7 22 228-249 2-23 (174)
331 TIGR03881 KaiC_arch_4 KaiC dom 95.4 0.11 2.4E-06 53.4 10.6 52 214-267 8-59 (229)
332 PF06745 KaiC: KaiC; InterPro 95.4 0.019 4.2E-07 58.9 4.9 101 215-319 8-125 (226)
333 PRK14974 cell division protein 95.4 0.11 2.4E-06 56.1 10.7 92 225-320 139-233 (336)
334 cd01129 PulE-GspE PulE/GspE Th 95.4 0.037 8E-07 58.0 7.0 89 226-328 80-168 (264)
335 PRK05342 clpX ATP-dependent pr 95.3 0.031 6.8E-07 62.2 6.7 46 203-248 71-130 (412)
336 COG1120 FepC ABC-type cobalami 95.3 0.13 2.9E-06 52.7 10.6 130 226-355 28-207 (258)
337 cd01135 V_A-ATPase_B V/A-type 95.3 0.068 1.5E-06 55.3 8.6 95 226-320 69-177 (276)
338 COG1419 FlhF Flagellar GTP-bin 95.3 0.084 1.8E-06 57.2 9.5 100 226-332 203-308 (407)
339 PRK13531 regulatory ATPase Rav 95.3 0.015 3.3E-07 64.8 4.0 44 202-249 19-62 (498)
340 TIGR00390 hslU ATP-dependent p 95.3 0.026 5.7E-07 61.6 5.7 77 203-281 12-104 (441)
341 PRK08533 flagellar accessory p 95.3 0.1 2.3E-06 53.5 10.0 49 225-277 23-71 (230)
342 PF07728 AAA_5: AAA domain (dy 95.3 0.023 4.9E-07 53.3 4.7 42 229-275 2-43 (139)
343 PRK12723 flagellar biosynthesi 95.3 0.24 5.2E-06 54.6 13.2 88 225-319 173-264 (388)
344 PRK00771 signal recognition pa 95.3 0.094 2E-06 58.8 10.2 57 225-283 94-151 (437)
345 PF00485 PRK: Phosphoribulokin 95.3 0.078 1.7E-06 52.9 8.7 84 228-313 1-87 (194)
346 TIGR00959 ffh signal recogniti 95.3 0.14 3.1E-06 57.2 11.4 25 225-249 98-122 (428)
347 COG0465 HflB ATP-dependent Zn 95.3 0.15 3.3E-06 58.5 11.7 178 200-405 147-357 (596)
348 PF12775 AAA_7: P-loop contain 95.2 0.034 7.5E-07 58.4 6.2 34 213-249 23-56 (272)
349 KOG0726 26S proteasome regulat 95.2 0.21 4.4E-06 50.9 11.0 92 203-319 185-288 (440)
350 KOG2123 Uncharacterized conser 95.2 0.0028 6.1E-08 63.6 -2.0 100 609-721 17-128 (388)
351 PRK08927 fliI flagellum-specif 95.1 0.068 1.5E-06 59.4 8.4 91 226-320 158-259 (442)
352 PRK07132 DNA polymerase III su 95.1 0.83 1.8E-05 48.6 16.3 151 226-408 18-184 (299)
353 PF13238 AAA_18: AAA domain; P 95.1 0.015 3.3E-07 53.6 2.9 21 229-249 1-21 (129)
354 PF12061 DUF3542: Protein of u 95.1 0.085 1.8E-06 54.0 8.2 76 5-80 297-373 (402)
355 TIGR00708 cobA cob(I)alamin ad 95.1 0.15 3.3E-06 49.0 9.6 119 226-348 5-141 (173)
356 cd03228 ABCC_MRP_Like The MRP 95.1 0.15 3.3E-06 49.6 10.0 120 226-352 28-160 (171)
357 TIGR02655 circ_KaiC circadian 95.1 0.1 2.2E-06 60.2 10.0 103 212-319 249-363 (484)
358 KOG0651 26S proteasome regulat 95.1 0.07 1.5E-06 54.9 7.4 29 226-256 166-194 (388)
359 cd03229 ABC_Class3 This class 95.1 0.14 3E-06 50.3 9.7 23 226-248 26-48 (178)
360 KOG0735 AAA+-type ATPase [Post 95.0 0.59 1.3E-05 53.7 15.2 174 204-405 668-872 (952)
361 TIGR03878 thermo_KaiC_2 KaiC d 95.0 0.12 2.6E-06 54.2 9.5 42 224-267 34-75 (259)
362 cd03246 ABCC_Protease_Secretio 95.0 0.14 3.1E-06 50.0 9.6 120 226-352 28-161 (173)
363 PF00006 ATP-synt_ab: ATP synt 95.0 0.077 1.7E-06 53.4 7.7 89 227-319 16-115 (215)
364 PRK11823 DNA repair protein Ra 95.0 0.058 1.3E-06 61.1 7.6 54 212-267 66-119 (446)
365 PRK12724 flagellar biosynthesi 95.0 0.15 3.2E-06 56.2 10.3 24 226-249 223-246 (432)
366 PRK09519 recA DNA recombinatio 95.0 0.082 1.8E-06 62.9 8.9 100 213-319 46-148 (790)
367 PRK05201 hslU ATP-dependent pr 95.0 0.037 7.9E-07 60.6 5.5 79 202-282 14-108 (443)
368 PRK05703 flhF flagellar biosyn 94.9 0.18 3.9E-06 56.6 11.3 87 226-318 221-308 (424)
369 cd01122 GP4d_helicase GP4d_hel 94.9 0.22 4.7E-06 52.8 11.4 53 226-281 30-82 (271)
370 PRK11388 DNA-binding transcrip 94.9 0.48 1E-05 56.9 15.6 47 203-249 325-371 (638)
371 PRK06547 hypothetical protein; 94.9 0.034 7.3E-07 54.1 4.7 25 225-249 14-38 (172)
372 PF07726 AAA_3: ATPase family 94.9 0.015 3.2E-07 52.3 1.9 28 229-258 2-29 (131)
373 PRK09270 nucleoside triphospha 94.9 0.028 6E-07 57.9 4.2 27 223-249 30-56 (229)
374 PRK08972 fliI flagellum-specif 94.9 0.093 2E-06 58.1 8.4 91 226-320 162-263 (444)
375 PTZ00301 uridine kinase; Provi 94.8 0.025 5.4E-07 56.8 3.7 23 226-248 3-25 (210)
376 COG1102 Cmk Cytidylate kinase 94.8 0.05 1.1E-06 50.5 5.2 43 228-283 2-44 (179)
377 KOG0729 26S proteasome regulat 94.8 0.077 1.7E-06 53.0 6.8 91 204-319 178-280 (435)
378 TIGR03574 selen_PSTK L-seryl-t 94.8 0.1 2.2E-06 54.5 8.4 22 228-249 1-22 (249)
379 cd02019 NK Nucleoside/nucleoti 94.8 0.02 4.4E-07 46.1 2.4 22 228-249 1-22 (69)
380 cd01130 VirB11-like_ATPase Typ 94.8 0.06 1.3E-06 53.3 6.3 96 226-329 25-120 (186)
381 PRK08149 ATP synthase SpaL; Va 94.8 0.1 2.2E-06 57.9 8.6 91 226-320 151-252 (428)
382 KOG0738 AAA+-type ATPase [Post 94.8 0.15 3.3E-06 54.2 9.3 93 203-320 212-315 (491)
383 COG0703 AroK Shikimate kinase 94.8 0.15 3.4E-06 48.6 8.6 28 227-256 3-30 (172)
384 COG2842 Uncharacterized ATPase 94.8 0.21 4.5E-06 51.6 10.1 119 201-332 70-190 (297)
385 PF03308 ArgK: ArgK protein; 94.8 0.041 9E-07 55.8 5.0 65 211-275 14-78 (266)
386 TIGR00416 sms DNA repair prote 94.8 0.099 2.1E-06 59.3 8.7 55 211-267 79-133 (454)
387 TIGR00150 HI0065_YjeE ATPase, 94.7 0.031 6.7E-07 51.2 3.7 24 226-249 22-45 (133)
388 PRK05986 cob(I)alamin adenolsy 94.7 0.11 2.4E-06 50.6 7.7 120 226-348 22-159 (191)
389 COG0467 RAD55 RecA-superfamily 94.7 0.034 7.3E-07 58.5 4.6 47 219-267 16-62 (260)
390 COG0194 Gmk Guanylate kinase [ 94.7 0.13 2.8E-06 49.4 7.9 24 226-249 4-27 (191)
391 cd03215 ABC_Carb_Monos_II This 94.7 0.16 3.4E-06 50.1 9.1 24 226-249 26-49 (182)
392 PRK10923 glnG nitrogen regulat 94.7 0.55 1.2E-05 54.3 14.9 47 203-249 138-184 (469)
393 PRK12597 F0F1 ATP synthase sub 94.7 0.078 1.7E-06 59.4 7.5 93 226-319 143-247 (461)
394 TIGR02329 propionate_PrpR prop 94.7 0.41 8.9E-06 55.3 13.5 47 203-249 212-258 (526)
395 COG1126 GlnQ ABC-type polar am 94.7 0.43 9.4E-06 46.9 11.4 35 226-263 28-62 (240)
396 PRK09099 type III secretion sy 94.7 0.11 2.3E-06 58.1 8.4 92 226-320 163-264 (441)
397 TIGR01420 pilT_fam pilus retra 94.7 0.055 1.2E-06 59.2 6.1 112 226-350 122-233 (343)
398 COG1224 TIP49 DNA helicase TIP 94.6 0.041 8.9E-07 57.6 4.7 56 201-256 37-95 (450)
399 TIGR03498 FliI_clade3 flagella 94.6 0.093 2E-06 58.3 7.7 92 226-320 140-241 (418)
400 PRK05480 uridine/cytidine kina 94.6 0.028 6E-07 57.0 3.4 25 225-249 5-29 (209)
401 KOG1947 Leucine rich repeat pr 94.6 0.0048 1E-07 71.7 -2.5 242 605-896 182-441 (482)
402 cd00267 ABC_ATPase ABC (ATP-bi 94.6 0.12 2.7E-06 49.5 7.8 117 226-353 25-146 (157)
403 PF00910 RNA_helicase: RNA hel 94.6 0.019 4.2E-07 51.0 2.0 21 229-249 1-21 (107)
404 PF07724 AAA_2: AAA domain (Cd 94.6 0.028 6.1E-07 54.6 3.2 40 226-267 3-43 (171)
405 TIGR00235 udk uridine kinase. 94.6 0.028 6.1E-07 56.8 3.4 25 225-249 5-29 (207)
406 cd03283 ABC_MutS-like MutS-lik 94.6 0.17 3.8E-06 50.5 9.0 22 227-248 26-47 (199)
407 cd03263 ABC_subfamily_A The AB 94.6 0.32 7E-06 49.6 11.2 24 226-249 28-51 (220)
408 cd01136 ATPase_flagellum-secre 94.5 0.17 3.7E-06 54.3 9.3 91 226-320 69-170 (326)
409 TIGR03575 selen_PSTK_euk L-ser 94.5 0.21 4.6E-06 53.8 10.0 21 229-249 2-22 (340)
410 PF00158 Sigma54_activat: Sigm 94.5 0.059 1.3E-06 52.2 5.3 45 205-249 1-45 (168)
411 PF06414 Zeta_toxin: Zeta toxi 94.5 0.049 1.1E-06 54.7 4.8 106 224-335 13-119 (199)
412 COG1703 ArgK Putative periplas 94.5 0.05 1.1E-06 55.9 4.8 65 213-277 38-102 (323)
413 PRK06762 hypothetical protein; 94.4 0.03 6.5E-07 54.3 3.2 24 226-249 2-25 (166)
414 PF10236 DAP3: Mitochondrial r 94.4 0.35 7.7E-06 51.9 11.6 48 359-406 258-306 (309)
415 cd03278 ABC_SMC_barmotin Barmo 94.4 0.52 1.1E-05 47.1 12.0 20 228-247 24-43 (197)
416 PRK12726 flagellar biosynthesi 94.4 0.43 9.3E-06 51.8 11.9 90 225-320 205-296 (407)
417 CHL00206 ycf2 Ycf2; Provisiona 94.4 0.37 8E-06 61.9 12.9 25 225-249 1629-1653(2281)
418 PRK10463 hydrogenase nickel in 94.4 0.12 2.6E-06 54.1 7.5 90 225-320 103-195 (290)
419 PRK03839 putative kinase; Prov 94.4 0.026 5.7E-07 55.6 2.7 22 228-249 2-23 (180)
420 PF01583 APS_kinase: Adenylyls 94.4 0.038 8.3E-07 52.1 3.5 36 226-263 2-37 (156)
421 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.4 0.44 9.4E-06 48.8 11.7 24 226-249 48-71 (224)
422 TIGR03522 GldA_ABC_ATP gliding 94.4 0.45 9.8E-06 51.2 12.3 24 226-249 28-51 (301)
423 PRK06217 hypothetical protein; 94.3 0.065 1.4E-06 53.0 5.3 22 228-249 3-24 (183)
424 cd03244 ABCC_MRP_domain2 Domai 94.3 0.33 7.2E-06 49.6 10.8 24 226-249 30-53 (221)
425 cd03237 ABC_RNaseL_inhibitor_d 94.3 0.43 9.4E-06 49.5 11.6 24 226-249 25-48 (246)
426 cd01132 F1_ATPase_alpha F1 ATP 94.3 0.12 2.7E-06 53.5 7.4 99 226-328 69-181 (274)
427 PRK00625 shikimate kinase; Pro 94.3 0.028 6.1E-07 54.6 2.6 21 228-248 2-22 (173)
428 cd02027 APSK Adenosine 5'-phos 94.3 0.25 5.3E-06 46.9 9.0 22 228-249 1-22 (149)
429 PTZ00185 ATPase alpha subunit; 94.3 0.33 7.1E-06 54.4 10.9 95 226-320 189-300 (574)
430 cd03281 ABC_MSH5_euk MutS5 hom 94.2 0.05 1.1E-06 55.0 4.4 23 226-248 29-51 (213)
431 PRK14721 flhF flagellar biosyn 94.2 0.55 1.2E-05 52.2 12.7 24 225-248 190-213 (420)
432 PRK10820 DNA-binding transcrip 94.2 0.15 3.3E-06 59.2 8.8 46 203-248 204-249 (520)
433 TIGR01360 aden_kin_iso1 adenyl 94.2 0.036 7.7E-07 55.1 3.2 24 225-248 2-25 (188)
434 PRK09544 znuC high-affinity zi 94.2 0.44 9.6E-06 49.7 11.4 24 226-249 30-53 (251)
435 PF00154 RecA: recA bacterial 94.2 0.21 4.5E-06 53.3 8.9 89 225-320 52-142 (322)
436 PF00625 Guanylate_kin: Guanyl 94.2 0.047 1E-06 53.9 3.9 39 226-266 2-40 (183)
437 PRK05922 type III secretion sy 94.1 0.2 4.3E-06 55.8 9.0 91 226-320 157-258 (434)
438 KOG1970 Checkpoint RAD17-RFC c 94.1 0.47 1E-05 52.9 11.6 40 210-249 89-133 (634)
439 PTZ00088 adenylate kinase 1; P 94.1 0.041 8.9E-07 56.1 3.5 20 229-248 9-28 (229)
440 PRK12678 transcription termina 94.1 0.1 2.2E-06 58.9 6.7 102 214-320 405-514 (672)
441 TIGR03771 anch_rpt_ABC anchore 94.1 0.62 1.3E-05 47.7 12.1 24 226-249 6-29 (223)
442 TIGR01069 mutS2 MutS2 family p 94.1 0.24 5.3E-06 59.9 10.4 112 308-429 401-521 (771)
443 TIGR03497 FliI_clade2 flagella 94.1 0.16 3.5E-06 56.4 8.2 91 226-320 137-238 (413)
444 PRK13543 cytochrome c biogenes 94.1 0.56 1.2E-05 47.6 11.7 24 226-249 37-60 (214)
445 cd03217 ABC_FeS_Assembly ABC-t 94.1 0.23 4.9E-06 49.9 8.7 24 226-249 26-49 (200)
446 COG0714 MoxR-like ATPases [Gen 94.1 0.092 2E-06 57.3 6.3 66 202-276 23-88 (329)
447 PRK12727 flagellar biosynthesi 94.1 0.15 3.2E-06 57.7 7.9 24 225-248 349-372 (559)
448 PRK07594 type III secretion sy 94.0 0.15 3.2E-06 56.8 7.8 91 226-320 155-256 (433)
449 PRK10416 signal recognition pa 94.0 0.24 5.3E-06 53.3 9.2 25 225-249 113-137 (318)
450 KOG2739 Leucine-rich acidic nu 94.0 0.022 4.7E-07 57.3 1.1 32 711-742 44-75 (260)
451 TIGR03305 alt_F1F0_F1_bet alte 94.0 0.14 2.9E-06 57.2 7.4 94 226-320 138-243 (449)
452 KOG3347 Predicted nucleotide k 94.0 0.061 1.3E-06 49.1 3.8 68 227-308 8-75 (176)
453 PF08298 AAA_PrkA: PrkA AAA do 94.0 0.049 1.1E-06 58.0 3.7 47 202-248 60-110 (358)
454 PRK07721 fliI flagellum-specif 93.9 0.21 4.5E-06 56.1 8.8 92 225-319 157-258 (438)
455 PRK05917 DNA polymerase III su 93.9 1.8 3.8E-05 45.7 15.0 136 213-365 7-154 (290)
456 PRK14738 gmk guanylate kinase; 93.9 0.046 1E-06 55.1 3.4 30 219-248 6-35 (206)
457 PRK06793 fliI flagellum-specif 93.9 0.42 9.2E-06 53.2 11.0 123 226-353 156-292 (432)
458 cd03240 ABC_Rad50 The catalyti 93.9 0.41 9E-06 48.1 10.2 52 301-352 131-188 (204)
459 KOG4252 GTP-binding protein [S 93.9 0.17 3.6E-06 47.4 6.5 38 227-265 21-58 (246)
460 PRK05688 fliI flagellum-specif 93.9 0.21 4.6E-06 55.8 8.6 91 226-320 168-269 (451)
461 TIGR01425 SRP54_euk signal rec 93.9 0.2 4.3E-06 55.7 8.4 24 225-248 99-122 (429)
462 cd03233 ABC_PDR_domain1 The pl 93.8 0.5 1.1E-05 47.4 10.7 24 226-249 33-56 (202)
463 KOG0736 Peroxisome assembly fa 93.8 0.22 4.7E-06 57.7 8.6 99 198-320 667-775 (953)
464 COG4088 Predicted nucleotide k 93.8 0.49 1.1E-05 45.9 9.7 23 227-249 2-24 (261)
465 PRK09280 F0F1 ATP synthase sub 93.8 0.17 3.7E-06 56.6 7.7 93 226-319 144-248 (463)
466 PRK13765 ATP-dependent proteas 93.8 0.071 1.5E-06 62.6 5.0 76 202-283 30-105 (637)
467 PRK00131 aroK shikimate kinase 93.8 0.045 9.8E-07 53.5 2.9 23 226-248 4-26 (175)
468 cd00984 DnaB_C DnaB helicase C 93.8 0.32 6.8E-06 50.5 9.4 54 225-281 12-65 (242)
469 PF06309 Torsin: Torsin; Inte 93.8 0.078 1.7E-06 47.6 4.0 46 204-249 26-76 (127)
470 TIGR03496 FliI_clade1 flagella 93.8 0.2 4.2E-06 55.8 8.1 90 226-319 137-237 (411)
471 PRK00409 recombination and DNA 93.7 0.52 1.1E-05 57.3 12.4 178 225-429 326-526 (782)
472 PRK00279 adk adenylate kinase; 93.7 0.23 5E-06 50.5 8.1 21 228-248 2-22 (215)
473 KOG0737 AAA+-type ATPase [Post 93.7 0.24 5.2E-06 52.6 8.0 31 225-257 126-156 (386)
474 PRK13947 shikimate kinase; Pro 93.7 0.043 9.4E-07 53.5 2.6 21 228-248 3-23 (171)
475 TIGR01040 V-ATPase_V1_B V-type 93.6 0.21 4.5E-06 55.5 7.9 94 226-319 141-257 (466)
476 cd03282 ABC_MSH4_euk MutS4 hom 93.6 0.66 1.4E-05 46.5 11.0 120 226-355 29-159 (204)
477 TIGR02322 phosphon_PhnN phosph 93.6 0.05 1.1E-06 53.5 2.9 23 227-249 2-24 (179)
478 TIGR02314 ABC_MetN D-methionin 93.6 0.56 1.2E-05 51.2 11.2 24 226-249 31-54 (343)
479 TIGR01188 drrA daunorubicin re 93.6 0.68 1.5E-05 49.9 11.8 23 226-248 19-41 (302)
480 COG0488 Uup ATPase components 93.6 0.72 1.6E-05 53.2 12.5 129 229-364 351-511 (530)
481 PF03205 MobB: Molybdopterin g 93.6 0.087 1.9E-06 49.2 4.3 39 227-266 1-39 (140)
482 TIGR01041 ATP_syn_B_arch ATP s 93.6 0.17 3.6E-06 56.9 7.2 95 226-320 141-249 (458)
483 PRK00889 adenylylsulfate kinas 93.6 0.061 1.3E-06 52.7 3.4 25 225-249 3-27 (175)
484 cd00071 GMPK Guanosine monopho 93.5 0.058 1.3E-06 50.3 3.0 22 228-249 1-22 (137)
485 COG1428 Deoxynucleoside kinase 93.5 0.052 1.1E-06 53.1 2.7 24 226-249 4-27 (216)
486 TIGR01026 fliI_yscN ATPase Fli 93.5 0.23 5E-06 55.8 8.2 90 226-319 163-263 (440)
487 PRK13545 tagH teichoic acids e 93.5 0.86 1.9E-05 52.0 12.7 24 226-249 50-73 (549)
488 cd02023 UMPK Uridine monophosp 93.5 0.046 1E-06 54.8 2.4 22 228-249 1-22 (198)
489 COG1124 DppF ABC-type dipeptid 93.5 0.096 2.1E-06 52.4 4.5 23 226-248 33-55 (252)
490 TIGR02655 circ_KaiC circadian 93.4 0.28 6.1E-06 56.5 9.0 99 215-318 10-129 (484)
491 PRK09302 circadian clock prote 93.4 0.27 6E-06 57.2 9.0 105 212-320 17-141 (509)
492 PF06068 TIP49: TIP49 C-termin 93.4 0.08 1.7E-06 56.5 4.1 48 202-249 23-73 (398)
493 PRK06936 type III secretion sy 93.4 0.25 5.5E-06 54.9 8.1 91 226-320 162-263 (439)
494 COG0396 sufC Cysteine desulfur 93.4 0.76 1.7E-05 45.7 10.4 58 299-356 152-213 (251)
495 PRK09302 circadian clock prote 93.4 0.39 8.5E-06 55.9 10.3 103 212-319 259-373 (509)
496 PF08433 KTI12: Chromatin asso 93.4 0.13 2.8E-06 53.9 5.6 23 227-249 2-24 (270)
497 cd00227 CPT Chloramphenicol (C 93.4 0.06 1.3E-06 52.7 3.0 23 227-249 3-25 (175)
498 cd02021 GntK Gluconate kinase 93.4 0.052 1.1E-06 51.6 2.5 22 228-249 1-22 (150)
499 TIGR00764 lon_rel lon-related 93.3 0.14 3.1E-06 60.2 6.5 75 202-283 17-92 (608)
500 PRK13537 nodulation ABC transp 93.3 0.82 1.8E-05 49.2 11.9 24 226-249 33-56 (306)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-91 Score=824.97 Aligned_cols=829 Identities=31% Similarity=0.452 Sum_probs=650.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhHhhhcCCHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 036584 3 DAVVSYVVETLGDYLIQEVNFLQGVRDEVESLKKELEWMQSFIKDAEAKQAGNNLIRRWVSDIRDIAYDAEDVLGKYMLS 82 (919)
Q Consensus 3 ~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~l~~a~~~~~~~~~~~~wl~~lr~~~yd~eD~ld~~~~~ 82 (919)
++.++..++|+.+++.+++..+.++++.+..|++.|..++++++||++++.....+..|...+++++|++||.++.|...
T Consensus 2 ~~~~s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~ 81 (889)
T KOG4658|consen 2 GACVSFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVE 81 (889)
T ss_pred CeEEEEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566678899999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccccCCCCCccccCCCcccccccccccccchh-c--ccccccccCCccccccccccccccchhHHHHHHHHHHHHHHHHH
Q 036584 83 VHGVNDEGTSEIEHSPVVDDEGTSQRWQGFFA-S--IKKCSCLSGEKASHRESNLFSKGKEKVTLYNIGKEIEALKKRLG 159 (919)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~ 159 (919)
....+. .+..+ + .....|. ...++..+..+..+.+|+.
T Consensus 82 ~~~~~~---------------------~~~l~~~~~~~~~~c~------------------~~~~~~~~~~~~~~~~rv~ 122 (889)
T KOG4658|consen 82 EIERKA---------------------NDLLSTRSVERQRLCL------------------CGFCSKNVSDSYKYGKRVS 122 (889)
T ss_pred HHHHHH---------------------hHHhhhhHHHHHHHhh------------------hhhHhHhhhhhHhHHHHHH
Confidence 654210 11110 0 0111111 1244566777777777777
Q ss_pred HHHHhhhccCccccccCchhhhhhhhhhhHHHHHhhhhcCCCCCCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchH
Q 036584 160 DVSRRCESYGLQNIIASDKKELAEKRDLDRLKELRKAASFAVEENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGK 239 (919)
Q Consensus 160 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGK 239 (919)
++.+....++.......... . ......+.+.|...+.. ||.+..++++.+.|.+.+. .+++|+||||+||
T Consensus 123 ~~l~~ve~l~~~~~~~~~~~-----~--~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGK 192 (889)
T KOG4658|consen 123 KVLREVESLGSKGVFEVVGE-----S--LDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGK 192 (889)
T ss_pred HHHHHHHHhccccceecccc-----c--ccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCCC--CEEEEECCCcccH
Confidence 77777777765442110000 0 00122234444444545 9999999999999999874 8999999999999
Q ss_pred HHHHHHHHcccC-ccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHHhccCceEEEEecc
Q 036584 240 TTLARKLYHNND-VKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDI 318 (919)
Q Consensus 240 TtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv 318 (919)
||||+.++|+.. ++.+|+.++||+||+.++...++.+|+..++.... .......++++..|.+.|+++|||||||||
T Consensus 193 TTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~--~~~~~~~~~~~~~i~~~L~~krfllvLDDI 270 (889)
T KOG4658|consen 193 TTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDE--EWEDKEEDELASKLLNLLEGKRFLLVLDDI 270 (889)
T ss_pred HHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCc--ccchhhHHHHHHHHHHHhccCceEEEEecc
Confidence 999999999987 99999999999999999999999999999887443 333444578999999999999999999999
Q ss_pred cchhHHHHHHhhCCCCCCCcEEEEEecchhhhhhcCCCCceEecCCCChHhHHHHHHHHhccCCCC-chhhHHHHHHHHH
Q 036584 319 WHKEDWVSLKSAFPENKIGSRVIITTRIKDVAERSDDRNYVHELRFLRQDESWQLFCERAFRNSKA-EKGLENLGREMVQ 397 (919)
Q Consensus 319 ~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~~~~~~I~~ 397 (919)
|+..+|+.+..++|....||||++|||+++|+....+..+.+++++|+.+|||+||++.+|..... .+.++++|++|++
T Consensus 271 W~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~ 350 (889)
T KOG4658|consen 271 WEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAE 350 (889)
T ss_pred cccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHH
Confidence 999999999999999988999999999999999944445899999999999999999999987433 5668999999999
Q ss_pred HcCCcchHHHHHHHHhcCC-ChHHHHHHHHHHHHhhcCC----chhhHHHHHhccccchHHHHHHHhHhcCCCCCceecH
Q 036584 398 KCDGLPLAIVVLGGLLSTK-RPQEWREVRNHIWRHLRND----SIQVSYLLDLSFNDLSHQLKLCFLYLSLFPEDFVINV 472 (919)
Q Consensus 398 ~~~G~PLal~~~~~~l~~~-~~~~w~~~~~~~~~~l~~~----~~~i~~~l~~sy~~L~~~~k~c~~~~s~fp~~~~i~~ 472 (919)
+|+|+|||++++|+.|+.| +.++|.++.+.+.+.+.++ .+.+.++|++||+.||++.|.||+|||+||+||.|++
T Consensus 351 kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~ 430 (889)
T KOG4658|consen 351 KCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKK 430 (889)
T ss_pred HhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccch
Confidence 9999999999999999999 8889999999887764322 3789999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCccc-CCCCCHHHHHHHHHHHHHHcccccccccCCCceeEEEecHHHHHHHHHHhh-----hcCcEEEe
Q 036584 473 EKLIRLLVAEGFIRQ-DEDRTMEEVAKDILDELINRSLIQVEKRCWGRISTCRVHDLLRDLAIQKAK-----ELNFIFIC 546 (919)
Q Consensus 473 ~~li~~w~aeg~i~~-~~~~~~e~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~H~lv~~~~~~~~~-----~e~~~~~~ 546 (919)
+.|+.+|+||||+.+ ..+.+++++|++|+.+|++++|++..+.. ++..+|+|||+|||+|.++++ +|++++..
T Consensus 431 e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~-~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~ 509 (889)
T KOG4658|consen 431 EKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE-GRKETVKMHDVVREMALWIASDFGKQEENQIVSD 509 (889)
T ss_pred HHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc-cceeEEEeeHHHHHHHHHHhccccccccceEEEC
Confidence 999999999999987 55889999999999999999999987733 667899999999999999999 78866554
Q ss_pred cCCCC-CCcccCCCCeeEEEEecCCCCccccccCCCcccEEEEecccccccccccccchhhhccCceEEEEEeccCcccc
Q 036584 547 DEAKN-PTRSSVISSCRRQAIYSHSPSYFWLHHGNSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRE 625 (919)
Q Consensus 547 ~~~~~-~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~ 625 (919)
+.+.. ......+..+||++++++..........+++++||.+.++. .........+|..++.||||||++|..
T Consensus 510 ~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~----~~l~~is~~ff~~m~~LrVLDLs~~~~-- 583 (889)
T KOG4658|consen 510 GVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNS----DWLLEISGEFFRSLPLLRVLDLSGNSS-- 583 (889)
T ss_pred CcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecc----hhhhhcCHHHHhhCcceEEEECCCCCc--
Confidence 31111 11223567899999997776666655568899999999982 113445667799999999999998334
Q ss_pred ccccccchhhhhhhcccccceEEeecCCCccccChhhhcCCCCcEEecCCCCCcccccCcccccccccccccccccc---
Q 036584 626 STLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVELPIEINMMQELRHLIGNFKG--- 702 (919)
Q Consensus 626 ~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~L~~L~~~~~~--- 702 (919)
+. ++|+.|++|.|||||+|++|.|..||.++.+|+.|.+||+..+ ..+..+|..+..|++|++|......
T Consensus 584 ---l~---~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~-~~l~~~~~i~~~L~~Lr~L~l~~s~~~~ 656 (889)
T KOG4658|consen 584 ---LS---KLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVT-GRLESIPGILLELQSLRVLRLPRSALSN 656 (889)
T ss_pred ---cC---cCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccc-cccccccchhhhcccccEEEeecccccc
Confidence 55 8999999999999999999999999999999999999999988 4555666666779999999543322
Q ss_pred -ccCCCCcCcCcccccccccccc---hhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCcc-
Q 036584 703 -TLPIENLTNLQTLKYVQSKSWN---KVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFA- 777 (919)
Q Consensus 703 -~~~i~~l~~L~~L~~~~~~~~~---~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~- 777 (919)
...++.+.+|++|..+.+.... ...+..+.+|+.+.+............ ..++..+.+|++|.+..+....+.
T Consensus 657 ~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~--~~~~~~l~~L~~L~i~~~~~~e~~~ 734 (889)
T KOG4658|consen 657 DKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTL--ISSLGSLGNLEELSILDCGISEIVI 734 (889)
T ss_pred chhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccccccee--ecccccccCcceEEEEcCCCchhhc
Confidence 2225556666666655554322 245555566654333222100011111 267788899999999877543211
Q ss_pred -CcCC--CC-CCCCceeEEEcee-cCCCCcchhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccccCeeEEE
Q 036584 778 -SLQP--LS-HCQCLVDLRLSGR-MKKLPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHYVKKLGC 852 (919)
Q Consensus 778 -~~~~--l~-~~~~L~~L~L~~~-~~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~ 852 (919)
.... .. .++++..+.+.++ ....+.|... +++|+.|++..|...+++++....+..+..+.+..+.+.......
T Consensus 735 ~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f-~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~ 813 (889)
T KOG4658|consen 735 EWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLF-APHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLC 813 (889)
T ss_pred ccccccchhhhHHHHHHHHhhccccccccchhhc-cCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeee
Confidence 1111 11 1345555555554 3456666644 499999999999988899999999998988777766666655567
Q ss_pred cCCCCcccceeEEecCCcccEEEcc----CCcccccceEEcccc-CccC-Cccc
Q 036584 853 RAEGFPLLEILQLDADGLVEWQVEE----GAMPVLRGLKIAAEI-PKLK-IPER 900 (919)
Q Consensus 853 ~~~~f~~L~~L~l~~~~l~~~~~~~----~~~p~L~~L~l~~nC-~~l~-lp~~ 900 (919)
..++|+++..+.+....+.+|..+. +.||.+.++.+.+ | +.+. +|.+
T Consensus 814 ~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~-~~~~~~~~~~~ 866 (889)
T KOG4658|consen 814 SLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVG-CEEKLKEYPDG 866 (889)
T ss_pred cCCCCceeEecccCccchhheehhcCcccccCccccccceec-cccceeecCCc
Confidence 7889999999999966688887776 8899999999999 7 6666 8876
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.3e-59 Score=585.55 Aligned_cols=660 Identities=20% Similarity=0.264 Sum_probs=439.9
Q ss_pred CCCCCCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEe---CCCC-------
Q 036584 199 FAVEENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSV---SQDY------- 268 (919)
Q Consensus 199 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~~------- 268 (919)
..+.+.+|||++.++++..+|....+.+++|+|+||||+||||||+.+|+ ++..+|+..+|+.. +...
T Consensus 180 ~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~ 257 (1153)
T PLN03210 180 SNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSAN 257 (1153)
T ss_pred CcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhccccc
Confidence 34567899999999999999987767799999999999999999999999 67889998888742 1110
Q ss_pred ----C-HHHHHHHHHHHhcccccccccccCCHHHHHHHHHHHhccCceEEEEecccchhHHHHHHhhCCCCCCCcEEEEE
Q 036584 269 ----K-IKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHKEDWVSLKSAFPENKIGSRVIIT 343 (919)
Q Consensus 269 ----~-~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivT 343 (919)
. ...+..+++.++..... ..... ...+++.++++|+||||||||+.+.|+.+.......++||+||||
T Consensus 258 ~~~~~~~~~l~~~~l~~il~~~~---~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiT 330 (1153)
T PLN03210 258 PDDYNMKLHLQRAFLSEILDKKD---IKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVI 330 (1153)
T ss_pred ccccchhHHHHHHHHHHHhCCCC---cccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEE
Confidence 0 12234444444433211 11111 245678889999999999999999999998776667789999999
Q ss_pred ecchhhhhhcCCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHHHHHhcCCChHHHHH
Q 036584 344 TRIKDVAERSDDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVLGGLLSTKRPQEWRE 423 (919)
Q Consensus 344 tr~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~~~~l~~~~~~~w~~ 423 (919)
||++.++...+.. +.|+++.++.++||+||+++||....+++.+.+++++|+++|+|+|||++++|+.|+.++..+|..
T Consensus 331 Trd~~vl~~~~~~-~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~ 409 (1153)
T PLN03210 331 TKDKHFLRAHGID-HIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMD 409 (1153)
T ss_pred eCcHHHHHhcCCC-eEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHH
Confidence 9999998776544 799999999999999999999987666777899999999999999999999999999888899999
Q ss_pred HHHHHHHhhcCCchhhHHHHHhccccchH-HHHHHHhHhcCCCCCceecHHHHHHHHHHcCCcccCCCCCHHHHHHHHHH
Q 036584 424 VRNHIWRHLRNDSIQVSYLLDLSFNDLSH-QLKLCFLYLSLFPEDFVINVEKLIRLLVAEGFIRQDEDRTMEEVAKDILD 502 (919)
Q Consensus 424 ~~~~~~~~l~~~~~~i~~~l~~sy~~L~~-~~k~c~~~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~e~~~~~~l~ 502 (919)
++.++.+.+ +..+..+|++||++|++ ..|.||+++|+|+.+..++ .+..|++.+... ++..++
T Consensus 410 ~l~~L~~~~---~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~----------~~~~l~ 473 (1153)
T PLN03210 410 MLPRLRNGL---DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLD----------VNIGLK 473 (1153)
T ss_pred HHHHHHhCc---cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCC----------chhChH
Confidence 999887643 25799999999999987 5999999999999886554 366787776442 223489
Q ss_pred HHHHcccccccccCCCceeEEEecHHHHHHHHHHhhhcC-------cEEEecCC-CCCCcccCCCCeeEEEEecCCCCcc
Q 036584 503 ELINRSLIQVEKRCWGRISTCRVHDLLRDLAIQKAKELN-------FIFICDEA-KNPTRSSVISSCRRQAIYSHSPSYF 574 (919)
Q Consensus 503 ~L~~~sll~~~~~~~~~~~~~~~H~lv~~~~~~~~~~e~-------~~~~~~~~-~~~~~~~~~~~~r~l~l~~~~~~~~ 574 (919)
.|+++||++... .++.|||++|++++++++++. |.....+- ..........+++++++........
T Consensus 474 ~L~~ksLi~~~~------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~ 547 (1153)
T PLN03210 474 NLVDKSLIHVRE------DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDEL 547 (1153)
T ss_pred HHHhcCCEEEcC------CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCcccee
Confidence 999999998654 359999999999999998763 21110000 0000001335677777664433322
Q ss_pred ccc----cCCCcccEEEEecccccccccccccchhhhcc-----------------------CceEEEEEeccCcccccc
Q 036584 575 WLH----HGNSLARSLLLFNQWWDETLGVKRHLPLLFER-----------------------FFLLRVFDVEADLDREST 627 (919)
Q Consensus 575 ~~~----~~~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~-----------------------~~~LrvL~L~~~~~~~~~ 627 (919)
... ..+++|+.|.+....++........+|..|.. +.+|+.|+|++ +.
T Consensus 548 ~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~-s~---- 622 (1153)
T PLN03210 548 HIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQG-SK---- 622 (1153)
T ss_pred eecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcC-cc----
Confidence 211 12777777777654211100011122222322 33445555554 44
Q ss_pred ccccchhhhhhhcccccceEEeecCCC-ccccChhhhcCCCCcEEecCCCCCcccccCcccccccccccccccc-----c
Q 036584 628 LMHWSNRLSEKIGDLIHLKYLGLRNSN-IGILPSSIVKLQRLQTLDFSGDVGCPVELPIEINMMQELRHLIGNF-----K 701 (919)
Q Consensus 628 ~i~~~~~lp~~i~~L~~Lr~L~L~~~~-i~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~L~~L~~~~-----~ 701 (919)
+. .+|..+..+++|++|+|+++. ++.+|. ++.+++|++|++++| ..+..+|..+.+|++|+.|.... .
T Consensus 623 -l~---~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c-~~L~~lp~si~~L~~L~~L~L~~c~~L~~ 696 (1153)
T PLN03210 623 -LE---KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDC-SSLVELPSSIQYLNKLEDLDMSRCENLEI 696 (1153)
T ss_pred -cc---ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCC-CCccccchhhhccCCCCEEeCCCCCCcCc
Confidence 44 445555555555555555432 344442 555555555555555 34455555555555555552211 1
Q ss_pred cccCCCCcCcCcccccccccccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCcc----
Q 036584 702 GTLPIENLTNLQTLKYVQSKSWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFA---- 777 (919)
Q Consensus 702 ~~~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---- 777 (919)
.|..+ ++++|+.|.+..|..... .....++|+.|.+.++.. ...+ .. ..+++|++|.+..+..+.+.
T Consensus 697 Lp~~i-~l~sL~~L~Lsgc~~L~~-~p~~~~nL~~L~L~~n~i---~~lP---~~-~~l~~L~~L~l~~~~~~~l~~~~~ 767 (1153)
T PLN03210 697 LPTGI-NLKSLYRLNLSGCSRLKS-FPDISTNISWLDLDETAI---EEFP---SN-LRLENLDELILCEMKSEKLWERVQ 767 (1153)
T ss_pred cCCcC-CCCCCCEEeCCCCCCccc-cccccCCcCeeecCCCcc---cccc---cc-ccccccccccccccchhhcccccc
Confidence 11112 455555555444431100 001123455555554431 1111 11 13556666666443221111
Q ss_pred CcCC--CCCCCCceeEEEceec--CCCCcchhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccccCeeEEEc
Q 036584 778 SLQP--LSHCQCLVDLRLSGRM--KKLPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHYVKKLGCR 853 (919)
Q Consensus 778 ~~~~--l~~~~~L~~L~L~~~~--~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~ 853 (919)
.+.+ ...+++|+.|+|++|. ..+|.++..+ ++|+.|+|++|......+.. ..+++|+.|+|++|.. ...++
T Consensus 768 ~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L-~~L~~L~Ls~C~~L~~LP~~-~~L~sL~~L~Ls~c~~-L~~~p-- 842 (1153)
T PLN03210 768 PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNL-HKLEHLEIENCINLETLPTG-INLESLESLDLSGCSR-LRTFP-- 842 (1153)
T ss_pred ccchhhhhccccchheeCCCCCCccccChhhhCC-CCCCEEECCCCCCcCeeCCC-CCccccCEEECCCCCc-ccccc--
Confidence 0111 2235789999998874 5688888887 99999999988543344333 3789999999985543 22221
Q ss_pred CCCCcccceeEEecCCcccEEEccCCcccccceEEccccCccC-CcccccCCCCCCeeEecccCC
Q 036584 854 AEGFPLLEILQLDADGLVEWQVEEGAMPVLRGLKIAAEIPKLK-IPERLRSVPPPAEWECEDSRN 917 (919)
Q Consensus 854 ~~~f~~L~~L~l~~~~l~~~~~~~~~~p~L~~L~l~~nC~~l~-lp~~l~~L~~L~~l~~~~~~~ 917 (919)
...++|+.|+|+.+.++.+|.....+++|+.|++++ |++++ +|..+..|+.|+.+++.+|.+
T Consensus 843 -~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~-C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 843 -DISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNG-CNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred -ccccccCEeECCCCCCccChHHHhcCCCCCEEECCC-CCCcCccCcccccccCCCeeecCCCcc
Confidence 234689999999888888887778899999999999 99999 998899999999999888864
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.3e-43 Score=381.52 Aligned_cols=279 Identities=38% Similarity=0.646 Sum_probs=231.8
Q ss_pred cccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccc
Q 036584 208 FEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTAL 287 (919)
Q Consensus 208 r~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~ 287 (919)
||.++++|.++|.......++|+|+||||+||||||..++++...+.+|+.++|++++...+...++..|+.++.....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~- 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS- 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S-
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccccc-
Confidence 7889999999999966779999999999999999999999976689999999999999999999999999999987532
Q ss_pred ccc-ccCCHHHHHHHHHHHhccCceEEEEecccchhHHHHHHhhCCCCCCCcEEEEEecchhhhhhcCCCCceEecCCCC
Q 036584 288 EDL-ETKTEEDLARSLRKSLEAYSYLMVIDDIWHKEDWVSLKSAFPENKIGSRVIITTRIKDVAERSDDRNYVHELRFLR 366 (919)
Q Consensus 288 ~~~-~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~~l~~L~ 366 (919)
.. ...+.++....+.+.|+++++||||||||+...|+.+...++....|++||||||+..++.........+++++|+
T Consensus 80 -~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 80 -SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLS 158 (287)
T ss_dssp -TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--
T ss_pred -ccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 12 4567788999999999999999999999999999999888888778999999999999887765434789999999
Q ss_pred hHhHHHHHHHHhccCC-CCchhhHHHHHHHHHHcCCcchHHHHHHHHhcCC-ChHHHHHHHHHHHHhhcC---CchhhHH
Q 036584 367 QDESWQLFCERAFRNS-KAEKGLENLGREMVQKCDGLPLAIVVLGGLLSTK-RPQEWREVRNHIWRHLRN---DSIQVSY 441 (919)
Q Consensus 367 ~~~~~~lf~~~~~~~~-~~~~~~~~~~~~I~~~~~G~PLal~~~~~~l~~~-~~~~w~~~~~~~~~~l~~---~~~~i~~ 441 (919)
.++|++||++.++... ..++...+.+++|+++|+|+||||+++|++|+.+ +..+|..+++++.+.... ....+..
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~ 238 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999998765 2355667889999999999999999999999777 789999999888776643 2378999
Q ss_pred HHHhccccchHHHHHHHhHhcCCCCCceecHHHHHHHHHHcCCcccC
Q 036584 442 LLDLSFNDLSHQLKLCFLYLSLFPEDFVINVEKLIRLLVAEGFIRQD 488 (919)
Q Consensus 442 ~l~~sy~~L~~~~k~c~~~~s~fp~~~~i~~~~li~~w~aeg~i~~~ 488 (919)
++.+||+.||++.|.||+|||+||+++.|+++.++++|++||||...
T Consensus 239 ~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 239 ALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 99999999999999999999999999999999999999999999653
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=3.1e-25 Score=236.30 Aligned_cols=313 Identities=19% Similarity=0.180 Sum_probs=200.3
Q ss_pred CCeeEEEEecCCCCccccccC-CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhh
Q 036584 559 SSCRRQAIYSHSPSYFWLHHG-NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSE 637 (919)
Q Consensus 559 ~~~r~l~l~~~~~~~~~~~~~-~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~ 637 (919)
.++.||++..+....+.-... ++.||++.+..+ ......+|..+-++..|.+||||+ +. +. +.|.
T Consensus 55 qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N-----~LKnsGiP~diF~l~dLt~lDLSh-Nq-----L~---EvP~ 120 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDN-----NLKNSGIPTDIFRLKDLTILDLSH-NQ-----LR---EVPT 120 (1255)
T ss_pred hhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcc-----ccccCCCCchhcccccceeeecch-hh-----hh---hcch
Confidence 456666666544443332322 777777777766 333344555566777777777777 77 66 7777
Q ss_pred hhcccccceEEeecCCCccccChh-hhcCCCCcEEecCCCCCcccccCccccccccccccccccccccCCCCcCcCcccc
Q 036584 638 KIGDLIHLKYLGLRNSNIGILPSS-IVKLQRLQTLDFSGDVGCPVELPIEINMMQELRHLIGNFKGTLPIENLTNLQTLK 716 (919)
Q Consensus 638 ~i~~L~~Lr~L~L~~~~i~~LP~~-l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~i~~l~~L~~L~ 716 (919)
++..-+++-.|+|++|+|..+|.+ +-+|..|-+||||+| .+..+|+.+..|.+|+.| .
T Consensus 121 ~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N--rLe~LPPQ~RRL~~LqtL-------------------~ 179 (1255)
T KOG0444|consen 121 NLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN--RLEMLPPQIRRLSMLQTL-------------------K 179 (1255)
T ss_pred hhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc--hhhhcCHHHHHHhhhhhh-------------------h
Confidence 777777777777777777777775 356777777777777 777777776666655555 3
Q ss_pred ccccc--ccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCc-CCCCCCCCceeEEE
Q 036584 717 YVQSK--SWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASL-QPLSHCQCLVDLRL 793 (919)
Q Consensus 717 ~~~~~--~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~L 793 (919)
+.++. ......+..++.|..|.+++.... .... |.++..+.||+.++++ .|.++.+ +.+..+++|+.|+|
T Consensus 180 Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT-l~N~---Ptsld~l~NL~dvDlS---~N~Lp~vPecly~l~~LrrLNL 252 (1255)
T KOG0444|consen 180 LSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT-LDNI---PTSLDDLHNLRDVDLS---ENNLPIVPECLYKLRNLRRLNL 252 (1255)
T ss_pred cCCChhhHHHHhcCccchhhhhhhcccccch-hhcC---CCchhhhhhhhhcccc---ccCCCcchHHHhhhhhhheecc
Confidence 33333 223333444444455555544321 1111 2455566666666663 3333322 22555666777777
Q ss_pred ceec-CCCCcchhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccccCeeEEEcCCCCcccceeEEecCCccc
Q 036584 794 SGRM-KKLPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHYVKKLGCRAEGFPLLEILQLDADGLVE 872 (919)
Q Consensus 794 ~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~l~~~~l~~ 872 (919)
++|. ..+....... .+|++|+|+.|+++ ..|.++..|+.|+.|.+.+|...-+.++..+|.+-+|+.+...+|+++-
T Consensus 253 S~N~iteL~~~~~~W-~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LEl 330 (1255)
T KOG0444|consen 253 SGNKITELNMTEGEW-ENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLEL 330 (1255)
T ss_pred CcCceeeeeccHHHH-hhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccccc
Confidence 7663 3444344444 67777777777775 5567777777777777776666666677777777777777777777777
Q ss_pred EEEccCCcccccceEEccccCccC-CcccccCCCCCCeeEecccCC
Q 036584 873 WQVEEGAMPVLRGLKIAAEIPKLK-IPERLRSVPPPAEWECEDSRN 917 (919)
Q Consensus 873 ~~~~~~~~p~L~~L~l~~nC~~l~-lp~~l~~L~~L~~l~~~~~~~ 917 (919)
+|.....|+.|++|.++ |+.|- +|++|.-|+.|+.|++..++|
T Consensus 331 VPEglcRC~kL~kL~L~--~NrLiTLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 331 VPEGLCRCVKLQKLKLD--HNRLITLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred CchhhhhhHHHHHhccc--ccceeechhhhhhcCCcceeeccCCcC
Confidence 77666777888888886 57776 888888888888888877765
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=7.5e-22 Score=248.57 Aligned_cols=334 Identities=21% Similarity=0.220 Sum_probs=159.3
Q ss_pred CCeeEEEEecCCCCccccccCCCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhhh
Q 036584 559 SSCRRQAIYSHSPSYFWLHHGNSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEK 638 (919)
Q Consensus 559 ~~~r~l~l~~~~~~~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~ 638 (919)
.++|+|.+..+..........+++|++|.+.++. ....+|..+..+++|++|+|++ |. +.. .+|..
T Consensus 118 ~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~------~~~~~p~~~~~l~~L~~L~L~~-n~-----l~~--~~p~~ 183 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNM------LSGEIPNDIGSFSSLKVLDLGG-NV-----LVG--KIPNS 183 (968)
T ss_pred CCCCEEECcCCccccccCccccCCCCEEECcCCc------ccccCChHHhcCCCCCEEECcc-Cc-----ccc--cCChh
Confidence 3455555553333221112225555555555551 1223444555566666666665 44 331 45555
Q ss_pred hcccccceEEeecCCCc-cccChhhhcCCCCcEEecCCCCCcccccCcccccccccccccc---cc--ccccCCCCcCcC
Q 036584 639 IGDLIHLKYLGLRNSNI-GILPSSIVKLQRLQTLDFSGDVGCPVELPIEINMMQELRHLIG---NF--KGTLPIENLTNL 712 (919)
Q Consensus 639 i~~L~~Lr~L~L~~~~i-~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~L~~L~~---~~--~~~~~i~~l~~L 712 (919)
++++.+|++|+|++|.+ ..+|..++++++|++|++++| .....+|..+.++++|++|.. .. ..+..++++++|
T Consensus 184 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 262 (968)
T PLN00113 184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN-NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNL 262 (968)
T ss_pred hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC-ccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCC
Confidence 56666666666666555 345555666666666666555 222345555555555555521 11 122235555555
Q ss_pred ccccccccc--ccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecC------------------
Q 036584 713 QTLKYVQSK--SWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLD------------------ 772 (919)
Q Consensus 713 ~~L~~~~~~--~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~------------------ 772 (919)
+.|.+..+. ...+..+..+++|+.|+++++... ... +..+..+++|+.|++.++.
T Consensus 263 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~---~~~--p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 337 (968)
T PLN00113 263 QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS---GEI--PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVL 337 (968)
T ss_pred CEEECcCCeeeccCchhHhhccCcCEEECcCCeec---cCC--ChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEE
Confidence 555554443 222334444555555555444210 001 1233334444444432211
Q ss_pred ---CCCccC-cC-CCCCCCCceeEEEceec--CCCCcchhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccc
Q 036584 773 ---ANSFAS-LQ-PLSHCQCLVDLRLSGRM--KKLPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCH 845 (919)
Q Consensus 773 ---~~~~~~-~~-~l~~~~~L~~L~L~~~~--~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~ 845 (919)
.+.+.. ++ .+..+++|+.|++++|. +.+|.++..+ ++|+.|++++|.+.+..+..++.+++|+.|+|++|.+
T Consensus 338 ~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l 416 (968)
T PLN00113 338 QLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS-GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF 416 (968)
T ss_pred ECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCc-CCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEe
Confidence 111110 11 13334445555554442 2344444443 5555555555555545555555666666666664433
Q ss_pred cCeeEEEcCCCCcccceeEEecCCcccE-EEccCCcccccceEEccccCccC-CcccccCCCCCCeeEecccC
Q 036584 846 YVKKLGCRAEGFPLLEILQLDADGLVEW-QVEEGAMPVLRGLKIAAEIPKLK-IPERLRSVPPPAEWECEDSR 916 (919)
Q Consensus 846 ~~~~~~~~~~~f~~L~~L~l~~~~l~~~-~~~~~~~p~L~~L~l~~nC~~l~-lp~~l~~L~~L~~l~~~~~~ 916 (919)
.+ .++.....+++|+.|+++.|.+... +.....+|+|+.|++++ |.-.. +|..+ ..++|+.+++++++
T Consensus 417 ~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-n~~~~~~p~~~-~~~~L~~L~ls~n~ 486 (968)
T PLN00113 417 SG-ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR-NKFFGGLPDSF-GSKRLENLDLSRNQ 486 (968)
T ss_pred ee-ECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC-ceeeeecCccc-ccccceEEECcCCc
Confidence 22 2233334566666666665555432 22233567777777776 54443 55543 34677777777654
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=2.2e-21 Score=244.37 Aligned_cols=239 Identities=23% Similarity=0.215 Sum_probs=160.1
Q ss_pred cCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCc-cccChhhhcCCCCcEEecCCCCCcccccCccc
Q 036584 609 RFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNI-GILPSSIVKLQRLQTLDFSGDVGCPVELPIEI 687 (919)
Q Consensus 609 ~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i-~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~~i 687 (919)
.+++|++|+|++ |. +. +.+|..++++.+|++|+|++|.+ ..+|..++++++|++|++++| .....+|..+
T Consensus 138 ~l~~L~~L~Ls~-n~-----~~--~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~l 208 (968)
T PLN00113 138 SIPNLETLDLSN-NM-----LS--GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN-QLVGQIPREL 208 (968)
T ss_pred ccCCCCEEECcC-Cc-----cc--ccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCC-CCcCcCChHH
Confidence 455666666666 55 43 25677778888888888888877 577778888888888888877 3344677778
Q ss_pred ccccccccccc---cc--ccccCCCCcCcCccccccccc--ccchhhccCCCCCCeEEeeecCccccccccchhhHHhhc
Q 036584 688 NMMQELRHLIG---NF--KGTLPIENLTNLQTLKYVQSK--SWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKL 760 (919)
Q Consensus 688 ~~L~~L~~L~~---~~--~~~~~i~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l 760 (919)
+++++|++|.. .. ..+..++.+++|++|++..+. ...+..++.+++|+.|.+..+.. .... +..+..+
T Consensus 209 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l---~~~~--p~~l~~l 283 (968)
T PLN00113 209 GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL---SGPI--PPSIFSL 283 (968)
T ss_pred cCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee---eccC--chhHhhc
Confidence 88888888732 22 234447788888888877766 34556677888888888877642 1111 2567778
Q ss_pred CCCcEEEEeecCCCCccCc--CCCCCCCCceeEEEceec--CCCCcchhccCCCcceEEEEccCCCCCCchhhhcCCCCC
Q 036584 761 KNLRFLSVKLLDANSFASL--QPLSHCQCLVDLRLSGRM--KKLPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLI 836 (919)
Q Consensus 761 ~~L~~L~l~~~~~~~~~~~--~~l~~~~~L~~L~L~~~~--~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~ 836 (919)
++|+.|+++++ .+... ..+..+++|+.|++++|. +..|.++..+ ++|+.|+|++|.+.+..+..++.+++|+
T Consensus 284 ~~L~~L~Ls~n---~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~l~~~~~L~ 359 (968)
T PLN00113 284 QKLISLDLSDN---SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL-PRLQVLQLWSNKFSGEIPKNLGKHNNLT 359 (968)
T ss_pred cCcCEEECcCC---eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcC-CCCCEEECcCCCCcCcCChHHhCCCCCc
Confidence 88888888543 22221 125667888888888774 4577777776 8888888888888777777888888888
Q ss_pred eEEEeeccccCeeEEEcCCCCcccceeEEe
Q 036584 837 ILDLHFRCHYVKKLGCRAEGFPLLEILQLD 866 (919)
Q Consensus 837 ~L~L~~~~~~~~~~~~~~~~f~~L~~L~l~ 866 (919)
.|+|++|...+ .++.....+++|+.|++.
T Consensus 360 ~L~Ls~n~l~~-~~p~~~~~~~~L~~L~l~ 388 (968)
T PLN00113 360 VLDLSTNNLTG-EIPEGLCSSGNLFKLILF 388 (968)
T ss_pred EEECCCCeeEe-eCChhHhCcCCCCEEECc
Confidence 88888655432 122222334444444444
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.80 E-value=1.7e-20 Score=199.55 Aligned_cols=307 Identities=20% Similarity=0.188 Sum_probs=221.9
Q ss_pred CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhhh-hcccccceEEeecCCCcccc
Q 036584 580 NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEK-IGDLIHLKYLGLRNSNIGIL 658 (919)
Q Consensus 580 ~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~-i~~L~~Lr~L~L~~~~i~~L 658 (919)
..++..|.+.++ .+...-.+.++-++.||+|||+. +. |. ++|.. +..=.++++|+|++|.|+.+
T Consensus 124 sghl~~L~L~~N------~I~sv~se~L~~l~alrslDLSr-N~-----is---~i~~~sfp~~~ni~~L~La~N~It~l 188 (873)
T KOG4194|consen 124 SGHLEKLDLRHN------LISSVTSEELSALPALRSLDLSR-NL-----IS---EIPKPSFPAKVNIKKLNLASNRITTL 188 (873)
T ss_pred ccceeEEeeecc------ccccccHHHHHhHhhhhhhhhhh-ch-----hh---cccCCCCCCCCCceEEeecccccccc
Confidence 556777777666 23334455677888999999998 77 76 66643 55557899999999999777
Q ss_pred Ch-hhhcCCCCcEEecCCCCCcccccCccccc-cccccccccc---cccc--cCCCCcCcCccccccccc--ccchhhcc
Q 036584 659 PS-SIVKLQRLQTLDFSGDVGCPVELPIEINM-MQELRHLIGN---FKGT--LPIENLTNLQTLKYVQSK--SWNKVNTA 729 (919)
Q Consensus 659 P~-~l~~L~~L~~L~L~~~~~~~~~lp~~i~~-L~~L~~L~~~---~~~~--~~i~~l~~L~~L~~~~~~--~~~~~~l~ 729 (919)
-. .+..|.+|-+|.|+.| .+..+|..+.+ |++|+.|... .... ..|..|++|+.|.+-.++ ...-..+-
T Consensus 189 ~~~~F~~lnsL~tlkLsrN--rittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy 266 (873)
T KOG4194|consen 189 ETGHFDSLNSLLTLKLSRN--RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFY 266 (873)
T ss_pred ccccccccchheeeecccC--cccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCccee
Confidence 54 6888889999999999 89999986555 9999998432 2222 237888999998888777 44445677
Q ss_pred CCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCcCCCCCCCCceeEEEceec-CCCCcchhccC
Q 036584 730 KLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASLQPLSHCQCLVDLRLSGRM-KKLPEDMHVFL 808 (919)
Q Consensus 730 ~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~ 808 (919)
.|.++++|++..+... ... . .++..+..|+.|+++......+ ....+..+++|+.|+|+.|. ..+++.-...+
T Consensus 267 ~l~kme~l~L~~N~l~---~vn-~-g~lfgLt~L~~L~lS~NaI~ri-h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L 340 (873)
T KOG4194|consen 267 GLEKMEHLNLETNRLQ---AVN-E-GWLFGLTSLEQLDLSYNAIQRI-HIDSWSFTQKLKELDLSSNRITRLDEGSFRVL 340 (873)
T ss_pred eecccceeecccchhh---hhh-c-ccccccchhhhhccchhhhhee-ecchhhhcccceeEeccccccccCChhHHHHH
Confidence 8889999999887522 111 2 5677888999999865444433 34557778999999999875 56665544445
Q ss_pred CCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccccCe--eEEEcCCCCcccceeEEecCCcccEEEc-cCCcccccc
Q 036584 809 PNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHYVK--KLGCRAEGFPLLEILQLDADGLVEWQVE-EGAMPVLRG 885 (919)
Q Consensus 809 ~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~--~~~~~~~~f~~L~~L~l~~~~l~~~~~~-~~~~p~L~~ 885 (919)
+.|+.|.|+.|.+....-..+..+.+|+.|+|..|..... .-.....++++|+.|.|..|+++.++.. ...+++|++
T Consensus 341 ~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~ 420 (873)
T KOG4194|consen 341 SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEH 420 (873)
T ss_pred HHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccce
Confidence 8999999999988755566788899999999986654221 1122345689999999999999988643 345889999
Q ss_pred eEEccccCccC--CcccccCCCCCCeeEe
Q 036584 886 LKIAAEIPKLK--IPERLRSVPPPAEWEC 912 (919)
Q Consensus 886 L~l~~nC~~l~--lp~~l~~L~~L~~l~~ 912 (919)
|++.+ +.+. -|..+.++ .|++|-.
T Consensus 421 LdL~~--NaiaSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 421 LDLGD--NAIASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred ecCCC--Ccceeecccccccc-hhhhhhh
Confidence 99988 4444 56677776 7776544
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.80 E-value=4.2e-20 Score=196.65 Aligned_cols=310 Identities=20% Similarity=0.224 Sum_probs=206.6
Q ss_pred CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccC
Q 036584 580 NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILP 659 (919)
Q Consensus 580 ~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP 659 (919)
.+..++|.++++ ...+.-+..|.++++|+.+++.+ +. +. .+|...+...||+.|+|.+|.|.++.
T Consensus 77 p~~t~~LdlsnN------kl~~id~~~f~nl~nLq~v~l~~-N~-----Lt---~IP~f~~~sghl~~L~L~~N~I~sv~ 141 (873)
T KOG4194|consen 77 PSQTQTLDLSNN------KLSHIDFEFFYNLPNLQEVNLNK-NE-----LT---RIPRFGHESGHLEKLDLRHNLISSVT 141 (873)
T ss_pred ccceeeeecccc------ccccCcHHHHhcCCcceeeeecc-ch-----hh---hcccccccccceeEEeeecccccccc
Confidence 677889999988 23445567789999999999999 88 87 89988888889999999999996665
Q ss_pred h-hhhcCCCCcEEecCCCCCcccccCc-ccccccccccccc---cccc--ccCCCCcCcCccccccccc--ccchhhccC
Q 036584 660 S-SIVKLQRLQTLDFSGDVGCPVELPI-EINMMQELRHLIG---NFKG--TLPIENLTNLQTLKYVQSK--SWNKVNTAK 730 (919)
Q Consensus 660 ~-~l~~L~~L~~L~L~~~~~~~~~lp~-~i~~L~~L~~L~~---~~~~--~~~i~~l~~L~~L~~~~~~--~~~~~~l~~ 730 (919)
. ++..++-|++|||+.| .+.++|. .+..-.++.+|.. ..+. ...|..+.+|-+|.+..+. ......++.
T Consensus 142 se~L~~l~alrslDLSrN--~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~ 219 (873)
T KOG4194|consen 142 SEELSALPALRSLDLSRN--LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKR 219 (873)
T ss_pred HHHHHhHhhhhhhhhhhc--hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhh
Confidence 4 7889999999999999 8888887 3455577888832 2111 1127778888888888877 456677888
Q ss_pred CCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCcCCCCCCCCceeEEEceec-C-CCCcchhcc-
Q 036584 731 LVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASLQPLSHCQCLVDLRLSGRM-K-KLPEDMHVF- 807 (919)
Q Consensus 731 l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~-~~p~~~~~l- 807 (919)
|++|+.|++..+... .. .+..+..+++|+.|.+...+...+. -..+..+.++++|+|..|. . .--.|++.+
T Consensus 220 L~~L~~LdLnrN~ir----iv-e~ltFqgL~Sl~nlklqrN~I~kL~-DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt 293 (873)
T KOG4194|consen 220 LPKLESLDLNRNRIR----IV-EGLTFQGLPSLQNLKLQRNDISKLD-DGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT 293 (873)
T ss_pred cchhhhhhcccccee----ee-hhhhhcCchhhhhhhhhhcCccccc-Ccceeeecccceeecccchhhhhhcccccccc
Confidence 999999888887532 11 1245566666666666332211110 0112233444444444332 1 112233333
Q ss_pred ----------------------CCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccccCeeEEEcCCCCcccceeEE
Q 036584 808 ----------------------LPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHYVKKLGCRAEGFPLLEILQL 865 (919)
Q Consensus 808 ----------------------~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~l 865 (919)
+++|+.|+|++|.++......+..|..|+.|+|++|...-. -...+.++.+|++|+|
T Consensus 294 ~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l-~e~af~~lssL~~LdL 372 (873)
T KOG4194|consen 294 SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHL-AEGAFVGLSSLHKLDL 372 (873)
T ss_pred hhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHH-HhhHHHHhhhhhhhcC
Confidence 25555555555555555555555555555555554443211 0122346789999999
Q ss_pred ecCCcccEEEccC-----CcccccceEEccccCccC-Ccc-cccCCCCCCeeEecccC
Q 036584 866 DADGLVEWQVEEG-----AMPVLRGLKIAAEIPKLK-IPE-RLRSVPPPAEWECEDSR 916 (919)
Q Consensus 866 ~~~~l~~~~~~~~-----~~p~L~~L~l~~nC~~l~-lp~-~l~~L~~L~~l~~~~~~ 916 (919)
..|.+. |.++.+ .||+|++|.+.+ ++++ +|. .+..|+.|++|++.++.
T Consensus 373 r~N~ls-~~IEDaa~~f~gl~~LrkL~l~g--Nqlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 373 RSNELS-WCIEDAAVAFNGLPSLRKLRLTG--NQLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred cCCeEE-EEEecchhhhccchhhhheeecC--ceeeecchhhhccCcccceecCCCCc
Confidence 988776 444432 389999999998 8999 875 78999999999998864
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.77 E-value=8.2e-21 Score=202.87 Aligned_cols=267 Identities=21% Similarity=0.227 Sum_probs=122.0
Q ss_pred cchhhhccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCc--cccChhhhcCCCCcEEecCCCCCc
Q 036584 602 HLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNI--GILPSSIVKLQRLQTLDFSGDVGC 679 (919)
Q Consensus 602 ~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i--~~LP~~l~~L~~L~~L~L~~~~~~ 679 (919)
.+|..++.+.+|.-|.+++ ++ +. .+-..+..|+.||.+.++.|++ ..+|..|-.|..|.+||||+| .
T Consensus 46 ~vPeEL~~lqkLEHLs~~H-N~-----L~---~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN--q 114 (1255)
T KOG0444|consen 46 QVPEELSRLQKLEHLSMAH-NQ-----LI---SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN--Q 114 (1255)
T ss_pred hChHHHHHHhhhhhhhhhh-hh-----hH---hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchh--h
Confidence 3455555555555555555 44 33 3444455555555555555555 445555555555555555555 5
Q ss_pred ccccCccccccccccccccccccccCCCCcCcCccccccccccc--chhhccCCCCCCeEEeeecCccccccccchhhHH
Q 036584 680 PVELPIEINMMQELRHLIGNFKGTLPIENLTNLQTLKYVQSKSW--NKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESI 757 (919)
Q Consensus 680 ~~~lp~~i~~L~~L~~L~~~~~~~~~i~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l 757 (919)
+.+.|.++..-+++-.| ++++++.. ....+.+|+.|-.|+++++.. +.+ |..+
T Consensus 115 L~EvP~~LE~AKn~iVL-------------------NLS~N~IetIPn~lfinLtDLLfLDLS~NrL----e~L--PPQ~ 169 (1255)
T KOG0444|consen 115 LREVPTNLEYAKNSIVL-------------------NLSYNNIETIPNSLFINLTDLLFLDLSNNRL----EML--PPQI 169 (1255)
T ss_pred hhhcchhhhhhcCcEEE-------------------EcccCccccCCchHHHhhHhHhhhccccchh----hhc--CHHH
Confidence 55555555555554444 33333311 112233344444444444421 111 1344
Q ss_pred hhcCCCcEEEEeecCCCCccCcCCCCCCCCceeEEEceec---CCCCcchhccCCCcceEEEEccCCCCCCchhhhcCCC
Q 036584 758 AKLKNLRFLSVKLLDANSFASLQPLSHCQCLVDLRLSGRM---KKLPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPN 834 (919)
Q Consensus 758 ~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~---~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~ 834 (919)
..+.+|++|.|++...+.+ .+..+..+.+|+.|++++.. .++|..+..+ .||..++|+.|.+. ..|..+-.+++
T Consensus 170 RRL~~LqtL~Ls~NPL~hf-QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l-~NL~dvDlS~N~Lp-~vPecly~l~~ 246 (1255)
T KOG0444|consen 170 RRLSMLQTLKLSNNPLNHF-QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDL-HNLRDVDLSENNLP-IVPECLYKLRN 246 (1255)
T ss_pred HHHhhhhhhhcCCChhhHH-HHhcCccchhhhhhhcccccchhhcCCCchhhh-hhhhhccccccCCC-cchHHHhhhhh
Confidence 4444555555432211111 11223334444455554432 3455555554 55555555555543 34445555555
Q ss_pred CCeEEEeeccccCeeEEEcCCCCcccceeEEecCCcccEEEccCCcccccceEEccccCccC---CcccccCCCCCCeeE
Q 036584 835 LIILDLHFRCHYVKKLGCRAEGFPLLEILQLDADGLVEWQVEEGAMPVLRGLKIAAEIPKLK---IPERLRSVPPPAEWE 911 (919)
Q Consensus 835 L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~l~~~~l~~~~~~~~~~p~L~~L~l~~nC~~l~---lp~~l~~L~~L~~l~ 911 (919)
|+.|+|++|.+ +++....+...+|++|+++-|+++.+|.....+|.|++|.+.+ ++|. +|+||..|..|+++.
T Consensus 247 LrrLNLS~N~i--teL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~--NkL~FeGiPSGIGKL~~Levf~ 322 (1255)
T KOG0444|consen 247 LRRLNLSGNKI--TELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANN--NKLTFEGIPSGIGKLIQLEVFH 322 (1255)
T ss_pred hheeccCcCce--eeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhcc--CcccccCCccchhhhhhhHHHH
Confidence 55555554332 2222233334455555555445554444444445555554443 3333 444444444444433
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.69 E-value=1.9e-16 Score=199.63 Aligned_cols=311 Identities=18% Similarity=0.170 Sum_probs=208.8
Q ss_pred CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccc-cccccccchhhhhhhcccc-cceEEeecCCCccc
Q 036584 580 NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDR-ESTLMHWSNRLSEKIGDLI-HLKYLGLRNSNIGI 657 (919)
Q Consensus 580 ~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~-~~~~i~~~~~lp~~i~~L~-~Lr~L~L~~~~i~~ 657 (919)
..+++.+.+.... .......+..|.+|++|+.|.+.. +.. ....+. ..+|..+..++ +||+|++.++.++.
T Consensus 531 ~~~v~~i~l~~~~----~~~~~i~~~aF~~m~~L~~L~~~~-~~~~~~~~~~--~~lp~~~~~lp~~Lr~L~~~~~~l~~ 603 (1153)
T PLN03210 531 TKKVLGITLDIDE----IDELHIHENAFKGMRNLLFLKFYT-KKWDQKKEVR--WHLPEGFDYLPPKLRLLRWDKYPLRC 603 (1153)
T ss_pred cceeeEEEeccCc----cceeeecHHHHhcCccccEEEEec-ccccccccce--eecCcchhhcCcccEEEEecCCCCCC
Confidence 4556655554331 111224456789999999999975 320 000011 15777777775 59999999999999
Q ss_pred cChhhhcCCCCcEEecCCCCCcccccCccccccccccccccc----cccccCCCCcCcCccccccccc--ccchhhccCC
Q 036584 658 LPSSIVKLQRLQTLDFSGDVGCPVELPIEINMMQELRHLIGN----FKGTLPIENLTNLQTLKYVQSK--SWNKVNTAKL 731 (919)
Q Consensus 658 LP~~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~L~~L~~~----~~~~~~i~~l~~L~~L~~~~~~--~~~~~~l~~l 731 (919)
+|..+ .+.+|+.|++++| .+..+|.++..+++|+.|... ......+..+++|++|.+..|. ...+..++.+
T Consensus 604 lP~~f-~~~~L~~L~L~~s--~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L 680 (1153)
T PLN03210 604 MPSNF-RPENLVKLQMQGS--KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYL 680 (1153)
T ss_pred CCCcC-CccCCcEEECcCc--cccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhcc
Confidence 99887 5789999999998 788999999899999988432 2223347788899999888776 4455667888
Q ss_pred CCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCcCCCCCCCCceeEEEceec-CCCCcch------
Q 036584 732 VNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASLQPLSHCQCLVDLRLSGRM-KKLPEDM------ 804 (919)
Q Consensus 732 ~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~------ 804 (919)
++|+.|.+++|.. ...+ |..+ ++++|+.|.+.+|.. +..++. .+++|+.|+|+++. ..+|..+
T Consensus 681 ~~L~~L~L~~c~~---L~~L--p~~i-~l~sL~~L~Lsgc~~--L~~~p~--~~~nL~~L~L~~n~i~~lP~~~~l~~L~ 750 (1153)
T PLN03210 681 NKLEDLDMSRCEN---LEIL--PTGI-NLKSLYRLNLSGCSR--LKSFPD--ISTNISWLDLDETAIEEFPSNLRLENLD 750 (1153)
T ss_pred CCCCEEeCCCCCC---cCcc--CCcC-CCCCCCEEeCCCCCC--cccccc--ccCCcCeeecCCCccccccccccccccc
Confidence 9999999988752 1122 0222 567778887765521 111111 12345555555442 2333221
Q ss_pred -----------------------hccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccccCeeEEEcCCCCcccc
Q 036584 805 -----------------------HVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHYVKKLGCRAEGFPLLE 861 (919)
Q Consensus 805 -----------------------~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~f~~L~ 861 (919)
...+++|+.|+|++|......|..++++++|+.|+|++ |.....++... .+++|+
T Consensus 751 ~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~-C~~L~~LP~~~-~L~sL~ 828 (1153)
T PLN03210 751 ELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIEN-CINLETLPTGI-NLESLE 828 (1153)
T ss_pred cccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCC-CCCcCeeCCCC-CccccC
Confidence 11246788888888866666777888899999999984 33333444332 578899
Q ss_pred eeEEe-cCCcccEEEccCCcccccceEEccccCccC-CcccccCCCCCCeeEecccCC
Q 036584 862 ILQLD-ADGLVEWQVEEGAMPVLRGLKIAAEIPKLK-IPERLRSVPPPAEWECEDSRN 917 (919)
Q Consensus 862 ~L~l~-~~~l~~~~~~~~~~p~L~~L~l~~nC~~l~-lp~~l~~L~~L~~l~~~~~~~ 917 (919)
.|+|+ |+.+..++. ..++|+.|++++ +.++ +|..+..+++|+.+++.+|.+
T Consensus 829 ~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~--n~i~~iP~si~~l~~L~~L~L~~C~~ 881 (1153)
T PLN03210 829 SLDLSGCSRLRTFPD---ISTNISDLNLSR--TGIEEVPWWIEKFSNLSFLDMNGCNN 881 (1153)
T ss_pred EEECCCCCccccccc---cccccCEeECCC--CCCccChHHHhcCCCCCEEECCCCCC
Confidence 99988 777776542 356888999987 6788 999999999999999998765
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.66 E-value=6.9e-19 Score=179.75 Aligned_cols=150 Identities=21% Similarity=0.269 Sum_probs=85.2
Q ss_pred hhhhccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccChhhhcCCCCcEEecCCCCCccccc
Q 036584 604 PLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVEL 683 (919)
Q Consensus 604 ~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~l 683 (919)
+..+..+..|..|+..+ ++ +. .+|+.++++..|..|++.+|+++.+|+..-+++.|++||...| .++.+
T Consensus 130 ~~~i~~~~~l~dl~~~~-N~-----i~---slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N--~L~tl 198 (565)
T KOG0472|consen 130 PDSIGRLLDLEDLDATN-NQ-----IS---SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN--LLETL 198 (565)
T ss_pred CchHHHHhhhhhhhccc-cc-----cc---cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh--hhhcC
Confidence 33444555555555555 44 44 5555566666666666666666555555555666666666555 56666
Q ss_pred Ccccccccccccccc---ccccccCCCCcCcCccccccccc--ccchhhccCCCCCCeEEeeecCccccccccchhhHHh
Q 036584 684 PIEINMMQELRHLIG---NFKGTLPIENLTNLQTLKYVQSK--SWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIA 758 (919)
Q Consensus 684 p~~i~~L~~L~~L~~---~~~~~~~i~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~ 758 (919)
|+.++.|.+|..|+. ....-..|+.+..|.+|+...+. ....+.+++++.+..|++..+. ..+.+ ..+.
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk---lke~P---de~c 272 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK---LKEVP---DEIC 272 (565)
T ss_pred ChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccc---cccCc---hHHH
Confidence 666666666665532 11222246666666666555444 2233345577788888888775 22222 5566
Q ss_pred hcCCCcEEEEee
Q 036584 759 KLKNLRFLSVKL 770 (919)
Q Consensus 759 ~l~~L~~L~l~~ 770 (919)
.+.+|+.|+++.
T Consensus 273 lLrsL~rLDlSN 284 (565)
T KOG0472|consen 273 LLRSLERLDLSN 284 (565)
T ss_pred HhhhhhhhcccC
Confidence 677777777743
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.58 E-value=6.5e-17 Score=182.03 Aligned_cols=91 Identities=26% Similarity=0.394 Sum_probs=58.8
Q ss_pred ccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccChhh
Q 036584 583 ARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILPSSI 662 (919)
Q Consensus 583 lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~l 662 (919)
|.+|.++++. ...+|..+..+.+|++|+++. +. +. .+|.+++++.+|+||+|.+|.+..+|.++
T Consensus 47 L~~l~lsnn~-------~~~fp~~it~l~~L~~ln~s~-n~-----i~---~vp~s~~~~~~l~~lnL~~n~l~~lP~~~ 110 (1081)
T KOG0618|consen 47 LKSLDLSNNQ-------ISSFPIQITLLSHLRQLNLSR-NY-----IR---SVPSSCSNMRNLQYLNLKNNRLQSLPASI 110 (1081)
T ss_pred eEEeeccccc-------cccCCchhhhHHHHhhcccch-hh-----Hh---hCchhhhhhhcchhheeccchhhcCchhH
Confidence 6666666662 223455556666677777776 55 55 66666777777777777777777777777
Q ss_pred hcCCCCcEEecCCCCCcccccCccccccc
Q 036584 663 VKLQRLQTLDFSGDVGCPVELPIEINMMQ 691 (919)
Q Consensus 663 ~~L~~L~~L~L~~~~~~~~~lp~~i~~L~ 691 (919)
..+++|+.|++++| .+..+|..+..+.
T Consensus 111 ~~lknl~~LdlS~N--~f~~~Pl~i~~lt 137 (1081)
T KOG0618|consen 111 SELKNLQYLDLSFN--HFGPIPLVIEVLT 137 (1081)
T ss_pred Hhhhcccccccchh--ccCCCchhHHhhh
Confidence 77777777777776 5555665444433
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.56 E-value=1.4e-17 Score=170.38 Aligned_cols=233 Identities=22% Similarity=0.230 Sum_probs=135.8
Q ss_pred CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccC
Q 036584 580 NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILP 659 (919)
Q Consensus 580 ~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP 659 (919)
+..+.+|.+..+. ...+|..+.++..+..|+.++ +. +. .+|+.++.+..|+.|+.+.|.+.++|
T Consensus 67 L~~l~vl~~~~n~-------l~~lp~aig~l~~l~~l~vs~-n~-----ls---~lp~~i~s~~~l~~l~~s~n~~~el~ 130 (565)
T KOG0472|consen 67 LACLTVLNVHDNK-------LSQLPAAIGELEALKSLNVSH-NK-----LS---ELPEQIGSLISLVKLDCSSNELKELP 130 (565)
T ss_pred ccceeEEEeccch-------hhhCCHHHHHHHHHHHhhccc-ch-----Hh---hccHHHhhhhhhhhhhccccceeecC
Confidence 4455555555541 224455566666666666666 55 55 66767777777777777777777777
Q ss_pred hhhhcCCCCcEEecCCCCCcccccCcccccccccccccc---cc-ccccCCCCcCcCccccccccc-ccchhhccCCCCC
Q 036584 660 SSIVKLQRLQTLDFSGDVGCPVELPIEINMMQELRHLIG---NF-KGTLPIENLTNLQTLKYVQSK-SWNKVNTAKLVNL 734 (919)
Q Consensus 660 ~~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~L~~L~~---~~-~~~~~i~~l~~L~~L~~~~~~-~~~~~~l~~l~~L 734 (919)
++++.+..|+.|+..+| .+..+|.+++.+.+|..+.. .. ..+...-.++.|++|+...+. ...+.+++.+..|
T Consensus 131 ~~i~~~~~l~dl~~~~N--~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L 208 (565)
T KOG0472|consen 131 DSIGRLLDLEDLDATNN--QISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESL 208 (565)
T ss_pred chHHHHhhhhhhhcccc--ccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhh
Confidence 77777777776666666 66666766666666666532 11 122222235666666555444 4455666666666
Q ss_pred CeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCcCC--CCCCCCceeEEEceec-CCCCcchhccCCCc
Q 036584 735 RDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASLQP--LSHCQCLVDLRLSGRM-KKLPEDMHVFLPNL 811 (919)
Q Consensus 735 ~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L 811 (919)
..|++..+... .. ..|..+..|..|++ +.|.+..++. ...+++|..|+++.|. ..+|..+..+ .+|
T Consensus 209 ~~LyL~~Nki~----~l---Pef~gcs~L~Elh~---g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clL-rsL 277 (565)
T KOG0472|consen 209 ELLYLRRNKIR----FL---PEFPGCSLLKELHV---GENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLL-RSL 277 (565)
T ss_pred HHHHhhhcccc----cC---CCCCccHHHHHHHh---cccHHHhhHHHHhcccccceeeeccccccccCchHHHHh-hhh
Confidence 66666655422 11 23444555555555 3344433322 4456666777776663 5567666655 777
Q ss_pred ceEEEEccCCCCCCchhhhcCCCCCeEEEeec
Q 036584 812 ECLSLSVPYPKEDPMPALEMLPNLIILDLHFR 843 (919)
Q Consensus 812 ~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~ 843 (919)
.+|++++|.++ ..+..+|+| .|+.|.+.||
T Consensus 278 ~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 278 ERLDLSNNDIS-SLPYSLGNL-HLKFLALEGN 307 (565)
T ss_pred hhhcccCCccc-cCCcccccc-eeeehhhcCC
Confidence 77777777765 345666766 6666666654
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.55 E-value=1.6e-16 Score=178.87 Aligned_cols=102 Identities=24% Similarity=0.269 Sum_probs=51.2
Q ss_pred CCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccccCeeEEEcCCCCcccceeEEecCCcccEEEccCCcccccceEE
Q 036584 809 PNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHYVKKLGCRAEGFPLLEILQLDADGLVEWQVEEGAMPVLRGLKI 888 (919)
Q Consensus 809 ~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~l~~~~l~~~~~~~~~~p~L~~L~l 888 (919)
.+|+.|+|++|.+...+...+.+++.|+.|+|+||.... ++.....++.|++|....|++...| +...+|.|+.+++
T Consensus 383 ~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~--Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDl 459 (1081)
T KOG0618|consen 383 KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT--LPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDL 459 (1081)
T ss_pred cceeeeeecccccccCCHHHHhchHHhHHHhcccchhhh--hhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEec
Confidence 556666666665544444455556666666666554321 1222233445555554444444444 4444555555555
Q ss_pred ccccCccC---CcccccCCCCCCeeEecccC
Q 036584 889 AAEIPKLK---IPERLRSVPPPAEWECEDSR 916 (919)
Q Consensus 889 ~~nC~~l~---lp~~l~~L~~L~~l~~~~~~ 916 (919)
+ |++|+ +|..... ++|+.++++|+.
T Consensus 460 S--~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 460 S--CNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred c--cchhhhhhhhhhCCC-cccceeeccCCc
Confidence 5 45555 4443333 555555555543
No 15
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.50 E-value=2.5e-12 Score=161.45 Aligned_cols=299 Identities=17% Similarity=0.183 Sum_probs=185.1
Q ss_pred CCCCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCC-CCHHHHHHHHHH
Q 036584 201 VEENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQD-YKIKDLLLRIIK 279 (919)
Q Consensus 201 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~ 279 (919)
....+|-|. ++.+.|... ...+++.|+|++|.||||++..+.++ ++.++|+++... .+...+...++.
T Consensus 12 ~~~~~~~R~----rl~~~l~~~-~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~ 80 (903)
T PRK04841 12 RLHNTVVRE----RLLAKLSGA-NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIA 80 (903)
T ss_pred CccccCcch----HHHHHHhcc-cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHH
Confidence 344566665 444445433 35789999999999999999999862 225899999644 466667777777
Q ss_pred Hhcccccc--c-------ccccCCHHHHHHHHHHHhc--cCceEEEEecccchh--HHH-HHHhhCCCCCCCcEEEEEec
Q 036584 280 SFNIMTAL--E-------DLETKTEEDLARSLRKSLE--AYSYLMVIDDIWHKE--DWV-SLKSAFPENKIGSRVIITTR 345 (919)
Q Consensus 280 ~l~~~~~~--~-------~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~--~~~-~l~~~l~~~~~gs~iivTtr 345 (919)
.+...... + .....+...+...+...+. +.+++|||||+...+ ... .+...+.....+.++|||||
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR 160 (903)
T PRK04841 81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSR 160 (903)
T ss_pred HHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 77532110 0 0111233344444544443 678999999997542 223 33333334455678889999
Q ss_pred chhhhhh--cCCCCceEecC----CCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHHHHHhcCCChH
Q 036584 346 IKDVAER--SDDRNYVHELR----FLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVLGGLLSTKRPQ 419 (919)
Q Consensus 346 ~~~v~~~--~~~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~~~~l~~~~~~ 419 (919)
...-... .........+. +|+.+|+.++|.......- -.+.+.+|++.|+|.|+++..++..+......
T Consensus 161 ~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~-----~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~ 235 (903)
T PRK04841 161 NLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI-----EAAESSRLCDDVEGWATALQLIALSARQNNSS 235 (903)
T ss_pred CCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC-----CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc
Confidence 8432111 00111344555 9999999999976653321 23456789999999999999988777544210
Q ss_pred HHHHHHHHHHHhhcC-CchhhHHHH-HhccccchHHHHHHHhHhcCCCCCceecHHHHHHHHHHcCCcccCCCCCHHHHH
Q 036584 420 EWREVRNHIWRHLRN-DSIQVSYLL-DLSFNDLSHQLKLCFLYLSLFPEDFVINVEKLIRLLVAEGFIRQDEDRTMEEVA 497 (919)
Q Consensus 420 ~w~~~~~~~~~~l~~-~~~~i~~~l-~~sy~~L~~~~k~c~~~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~e~~~ 497 (919)
.... .+.+.. ....+...+ .-.++.||+..+..+...|+++ .++.+.+-... | .+.+
T Consensus 236 -~~~~----~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~l~---~----------~~~~ 294 (903)
T PRK04841 236 -LHDS----ARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVRVT---G----------EENG 294 (903)
T ss_pred -hhhh----hHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHHHc---C----------CCcH
Confidence 0000 111111 112344433 3447899999999999999997 24433222111 1 1225
Q ss_pred HHHHHHHHHcccccccccCCCceeEEEecHHHHHHHHHHhh
Q 036584 498 KDILDELINRSLIQVEKRCWGRISTCRVHDLLRDLAIQKAK 538 (919)
Q Consensus 498 ~~~l~~L~~~sll~~~~~~~~~~~~~~~H~lv~~~~~~~~~ 538 (919)
.+.+++|.+.+++....+ +....|+.|++++++++....
T Consensus 295 ~~~L~~l~~~~l~~~~~~--~~~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 295 QMRLEELERQGLFIQRMD--DSGEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred HHHHHHHHHCCCeeEeec--CCCCEEehhHHHHHHHHHHHH
Confidence 778999999999754321 122468899999999998764
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.43 E-value=5.8e-13 Score=155.81 Aligned_cols=250 Identities=18% Similarity=0.117 Sum_probs=155.8
Q ss_pred eEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccChhhhcCCCCcEEecCCCCCcccccCccccccc
Q 036584 612 LLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVELPIEINMMQ 691 (919)
Q Consensus 612 ~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~ 691 (919)
.-.+|+|++ +. +. .+|..+. .+|+.|++.+|+++.+|.. +++|++|++++| .+..+|....
T Consensus 202 ~~~~LdLs~-~~-----Lt---sLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N--~LtsLP~lp~--- 262 (788)
T PRK15387 202 GNAVLNVGE-SG-----LT---TLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGN--QLTSLPVLPP--- 262 (788)
T ss_pred CCcEEEcCC-CC-----CC---cCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCC--ccCcccCccc---
Confidence 456778887 66 76 7777665 3788888888888888752 567888888887 6777776443
Q ss_pred cccccc---cccccccCCCCcCcCcccccccccccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEE
Q 036584 692 ELRHLI---GNFKGTLPIENLTNLQTLKYVQSKSWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSV 768 (919)
Q Consensus 692 ~L~~L~---~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 768 (919)
+|+.|. +...... ...++|+.|.+..|....+. ..+++|+.|++++|... ... . ...+|+.|.+
T Consensus 263 sL~~L~Ls~N~L~~Lp--~lp~~L~~L~Ls~N~Lt~LP--~~p~~L~~LdLS~N~L~---~Lp---~---lp~~L~~L~L 329 (788)
T PRK15387 263 GLLELSIFSNPLTHLP--ALPSGLCKLWIFGNQLTSLP--VLPPGLQELSVSDNQLA---SLP---A---LPSELCKLWA 329 (788)
T ss_pred ccceeeccCCchhhhh--hchhhcCEEECcCCcccccc--ccccccceeECCCCccc---cCC---C---Cccccccccc
Confidence 444442 2211111 12245666666555422111 12367888888877522 111 1 1135666766
Q ss_pred eecCCCCccCcCCCCCCCCceeEEEceec-CCCCcchhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccccC
Q 036584 769 KLLDANSFASLQPLSHCQCLVDLRLSGRM-KKLPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHYV 847 (919)
Q Consensus 769 ~~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~ 847 (919)
.+ |.+..++. .+++|+.|+|++|. ..+|. ++++|+.|++++|.+.. .+. .+++|+.|+|++|.+..
T Consensus 330 s~---N~L~~LP~--lp~~Lq~LdLS~N~Ls~LP~----lp~~L~~L~Ls~N~L~~-LP~---l~~~L~~LdLs~N~Lt~ 396 (788)
T PRK15387 330 YN---NQLTSLPT--LPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS 396 (788)
T ss_pred cc---Cccccccc--cccccceEecCCCccCCCCC----CCcccceehhhcccccc-Ccc---cccccceEEecCCcccC
Confidence 43 33333332 23578888888874 45563 23778888888888763 222 23578888888665432
Q ss_pred eeEEEcCCCCcccceeEEecCCcccEEEccCCcccccceEEccccCccC-CcccccCCCCCCeeEecccC
Q 036584 848 KKLGCRAEGFPLLEILQLDADGLVEWQVEEGAMPVLRGLKIAAEIPKLK-IPERLRSVPPPAEWECEDSR 916 (919)
Q Consensus 848 ~~~~~~~~~f~~L~~L~l~~~~l~~~~~~~~~~p~L~~L~l~~nC~~l~-lp~~l~~L~~L~~l~~~~~~ 916 (919)
++ ..+++|+.|+++.|.++.+|. .+.+|+.|++++ ++++ +|..+.+++.|..+++++++
T Consensus 397 --LP---~l~s~L~~LdLS~N~LssIP~---l~~~L~~L~Ls~--NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 397 --LP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYR--NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred --CC---CcccCCCEEEccCCcCCCCCc---chhhhhhhhhcc--CcccccChHHhhccCCCeEECCCCC
Confidence 22 124678888888777877653 245788888886 6677 88888888888888888754
No 17
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.42 E-value=7.7e-11 Score=132.75 Aligned_cols=312 Identities=16% Similarity=0.088 Sum_probs=186.8
Q ss_pred CCCCCccccccCHHHHHHHHhcC--CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHH
Q 036584 200 AVEENPVGFEDDTDLLLAKLLDK--EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRI 277 (919)
Q Consensus 200 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 277 (919)
..++.++||+++++++...+... ......+.|+|++|+|||++++.++++.......-.++++++....+...++..+
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHH
Confidence 35568999999999999998553 2334567899999999999999999853333223446777777777888899999
Q ss_pred HHHhcccccccccccCCHHHHHHHHHHHhc--cCceEEEEecccchh------HHHHHHhhCCCCC-CCcEEEEEecchh
Q 036584 278 IKSFNIMTALEDLETKTEEDLARSLRKSLE--AYSYLMVIDDIWHKE------DWVSLKSAFPENK-IGSRVIITTRIKD 348 (919)
Q Consensus 278 l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~------~~~~l~~~l~~~~-~gs~iivTtr~~~ 348 (919)
+.++..... .....+.+++...+.+.+. +++.+||||+++... .+..+...+.... ....+|.++....
T Consensus 107 ~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 107 ARQLFGHPP--PSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLT 184 (394)
T ss_pred HHHhcCCCC--CCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcc
Confidence 999875221 1123456677777877774 456899999998642 2333333222211 1223566665544
Q ss_pred hhhhcCC------CCceEecCCCChHhHHHHHHHHhccCC---CC-chhhHHHHHHHHHHcCCcchHHHHHHHHh--c--
Q 036584 349 VAERSDD------RNYVHELRFLRQDESWQLFCERAFRNS---KA-EKGLENLGREMVQKCDGLPLAIVVLGGLL--S-- 414 (919)
Q Consensus 349 v~~~~~~------~~~~~~l~~L~~~~~~~lf~~~~~~~~---~~-~~~~~~~~~~I~~~~~G~PLal~~~~~~l--~-- 414 (919)
+...... ....+.+++++.++..+++..++.... .. ++.+..+++......|..+.|+.++-.+. .
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 3332211 114678999999999999998764321 11 22223333333333455777776654322 1
Q ss_pred C---C-ChHHHHHHHHHHHHhhcCCchhhHHHHHhccccchHHHHHHHhHhcCC-C-CCceecHHHHHHH--HHHcCCcc
Q 036584 415 T---K-RPQEWREVRNHIWRHLRNDSIQVSYLLDLSFNDLSHQLKLCFLYLSLF-P-EDFVINVEKLIRL--LVAEGFIR 486 (919)
Q Consensus 415 ~---~-~~~~w~~~~~~~~~~l~~~~~~i~~~l~~sy~~L~~~~k~c~~~~s~f-p-~~~~i~~~~li~~--w~aeg~i~ 486 (919)
. . +.+....+.+... ...+.-.+..||.+.|..+..++.. . ....+....+... .+++.+-.
T Consensus 265 ~~~~~I~~~~v~~a~~~~~----------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~ 334 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKSE----------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY 334 (394)
T ss_pred cCCCCcCHHHHHHHHHHHH----------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC
Confidence 1 1 3445555444331 1223456789999988877665533 2 1134566666543 23322211
Q ss_pred cCCCCCHHHHHHHHHHHHHHcccccccc---cCCCceeEEEec
Q 036584 487 QDEDRTMEEVAKDILDELINRSLIQVEK---RCWGRISTCRVH 526 (919)
Q Consensus 487 ~~~~~~~e~~~~~~l~~L~~~sll~~~~---~~~~~~~~~~~H 526 (919)
.........+|+..|...|+|.... ...|+.+.++++
T Consensus 335 ---~~~~~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~ 374 (394)
T PRK00411 335 ---EPRTHTRFYEYINKLDMLGIINTRYSGKGGRGRTRLISLS 374 (394)
T ss_pred ---CcCcHHHHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEec
Confidence 0112244677999999999998654 234555556554
No 18
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.32 E-value=9.7e-10 Score=122.52 Aligned_cols=301 Identities=17% Similarity=0.135 Sum_probs=179.6
Q ss_pred CCCCCccccccCHHHHHHHHhcC--CCCcEEEEEEecCCchHHHHHHHHHcccCcc-CCC---CEEEEEEeCCCCCHHHH
Q 036584 200 AVEENPVGFEDDTDLLLAKLLDK--EQRRLVISIYGMGGLGKTTLARKLYHNNDVK-NKF---DYCAWVSVSQDYKIKDL 273 (919)
Q Consensus 200 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~-~~f---~~~~wv~~~~~~~~~~~ 273 (919)
..++.++||++++++|..+|... ......+.|+|++|+|||++++.++++.... ... -..+|+++....+...+
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~ 91 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQV 91 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHH
Confidence 34568999999999999998752 2334578999999999999999999752111 111 24678888777778889
Q ss_pred HHHHHHHhcc-cccccccccCCHHHHHHHHHHHhc--cCceEEEEecccchh-H----HHHHHhhC-CCCC--CCcEEEE
Q 036584 274 LLRIIKSFNI-MTALEDLETKTEEDLARSLRKSLE--AYSYLMVIDDIWHKE-D----WVSLKSAF-PENK--IGSRVII 342 (919)
Q Consensus 274 ~~~il~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~-~----~~~l~~~l-~~~~--~gs~iiv 342 (919)
+..|+.++.. .... .....+..+....+.+.+. +++++||||+++... . ...+.... .... ....+|.
T Consensus 92 ~~~i~~~l~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~ 170 (365)
T TIGR02928 92 LVELANQLRGSGEEV-PTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIG 170 (365)
T ss_pred HHHHHHHHhhcCCCC-CCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEE
Confidence 9999999852 1110 1122345566666666663 567899999998651 1 22222221 1111 2334455
Q ss_pred EecchhhhhhcC----C--CCceEecCCCChHhHHHHHHHHhcc---CCCCchhhHHHHHHHHHHcCCcchHH-HHHHHH
Q 036584 343 TTRIKDVAERSD----D--RNYVHELRFLRQDESWQLFCERAFR---NSKAEKGLENLGREMVQKCDGLPLAI-VVLGGL 412 (919)
Q Consensus 343 Ttr~~~v~~~~~----~--~~~~~~l~~L~~~~~~~lf~~~~~~---~~~~~~~~~~~~~~I~~~~~G~PLal-~~~~~~ 412 (919)
++.......... . ....+.+++++.++..+++..++.. ...-.++..+.+.+++..+.|.|-.+ .++-.+
T Consensus 171 i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a 250 (365)
T TIGR02928 171 ISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVA 250 (365)
T ss_pred EECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 554443221111 1 1146889999999999999988642 11113344445566777888988544 322221
Q ss_pred h----cC---C-ChHHHHHHHHHHHHhhcCCchhhHHHHHhccccchHHHHHHHhHhcCC--CCCceecHHHHHHHHH--
Q 036584 413 L----ST---K-RPQEWREVRNHIWRHLRNDSIQVSYLLDLSFNDLSHQLKLCFLYLSLF--PEDFVINVEKLIRLLV-- 480 (919)
Q Consensus 413 l----~~---~-~~~~w~~~~~~~~~~l~~~~~~i~~~l~~sy~~L~~~~k~c~~~~s~f--p~~~~i~~~~li~~w~-- 480 (919)
. .. . +.+....+.+... .....-++..||.+.|..+..++.. ..+..+....+...+-
T Consensus 251 ~~~a~~~~~~~it~~~v~~a~~~~~----------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~ 320 (365)
T TIGR02928 251 GEIAEREGAERVTEDHVEKAQEKIE----------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEV 320 (365)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHH----------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 1 11 1 3444444433321 1223456678999888766665521 1334467777776442
Q ss_pred HcCCcccCCCCCHHHHHHHHHHHHHHcccccccc
Q 036584 481 AEGFIRQDEDRTMEEVAKDILDELINRSLIQVEK 514 (919)
Q Consensus 481 aeg~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~ 514 (919)
++.+- ..........+++..|...|+|....
T Consensus 321 ~~~~~---~~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 321 CEDIG---VDPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHhcC---CCCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 22111 11233466888999999999998764
No 19
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.30 E-value=3.5e-10 Score=128.37 Aligned_cols=301 Identities=20% Similarity=0.196 Sum_probs=195.7
Q ss_pred CCCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCC-CCHHHHHHHHHHH
Q 036584 202 EENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQD-YKIKDLLLRIIKS 280 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~ 280 (919)
..+.|-| .++++.|.... +.+.+.|..|+|.|||||+..++. +.. .=..+.|++..+. .++..++..++..
T Consensus 18 ~~~~v~R----~rL~~~L~~~~-~~RL~li~APAGfGKttl~aq~~~--~~~-~~~~v~Wlslde~dndp~rF~~yLi~a 89 (894)
T COG2909 18 PDNYVVR----PRLLDRLRRAN-DYRLILISAPAGFGKTTLLAQWRE--LAA-DGAAVAWLSLDESDNDPARFLSYLIAA 89 (894)
T ss_pred ccccccc----HHHHHHHhcCC-CceEEEEeCCCCCcHHHHHHHHHH--hcC-cccceeEeecCCccCCHHHHHHHHHHH
Confidence 3444444 56777776652 589999999999999999999986 222 2234999998765 4677788888888
Q ss_pred hccccc--cc-------ccccCCHHHHHHHHHHHhc--cCceEEEEecccch---hHHHHHHhhCCCCCCCcEEEEEecc
Q 036584 281 FNIMTA--LE-------DLETKTEEDLARSLRKSLE--AYSYLMVIDDIWHK---EDWVSLKSAFPENKIGSRVIITTRI 346 (919)
Q Consensus 281 l~~~~~--~~-------~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~iivTtr~ 346 (919)
+..-.+ .+ .....+...+...+...+. .++..+||||-.-. .--..+...+.....+-.+|||||+
T Consensus 90 l~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~ 169 (894)
T COG2909 90 LQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRS 169 (894)
T ss_pred HHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEecc
Confidence 874221 00 1122345556666666663 46899999997633 2222333333445568889999998
Q ss_pred hhhhhhcCCC--CceEecC----CCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHHHHHhcCC-ChH
Q 036584 347 KDVAERSDDR--NYVHELR----FLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVLGGLLSTK-RPQ 419 (919)
Q Consensus 347 ~~v~~~~~~~--~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~~~~l~~~-~~~ 419 (919)
..-.....-. ...+++. .++.+|+-++|..+....- ....++.+.+..+|.+-|+..++=.++.+ +.+
T Consensus 170 rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L-----d~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~ 244 (894)
T COG2909 170 RPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL-----DAADLKALYDRTEGWAAALQLIALALRNNTSAE 244 (894)
T ss_pred CCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC-----ChHHHHHHHhhcccHHHHHHHHHHHccCCCcHH
Confidence 7543322111 1223332 4899999999987653222 23347789999999999999999888844 433
Q ss_pred HHHHHHHHHHHhhcCCchhhHHHHHhccccchHHHHHHHhHhcCCCCCceecHHHHHHHHHHcCCcccCCCCCHHHHHHH
Q 036584 420 EWREVRNHIWRHLRNDSIQVSYLLDLSFNDLSHQLKLCFLYLSLFPEDFVINVEKLIRLLVAEGFIRQDEDRTMEEVAKD 499 (919)
Q Consensus 420 ~w~~~~~~~~~~l~~~~~~i~~~l~~sy~~L~~~~k~c~~~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~e~~~~~ 499 (919)
.-...+.-..+.+ ......--++.||+.+|..++-+|+++.- . +.|...- +.++.+..
T Consensus 245 q~~~~LsG~~~~l------~dYL~eeVld~Lp~~l~~FLl~~svl~~f---~-~eL~~~L------------tg~~ng~a 302 (894)
T COG2909 245 QSLRGLSGAASHL------SDYLVEEVLDRLPPELRDFLLQTSVLSRF---N-DELCNAL------------TGEENGQA 302 (894)
T ss_pred HHhhhccchHHHH------HHHHHHHHHhcCCHHHHHHHHHHHhHHHh---h-HHHHHHH------------hcCCcHHH
Confidence 3222222111111 11223445789999999999999998642 1 3333333 23455888
Q ss_pred HHHHHHHcccccccccCCCceeEEEecHHHHHHHHHHhhh
Q 036584 500 ILDELINRSLIQVEKRCWGRISTCRVHDLLRDLAIQKAKE 539 (919)
Q Consensus 500 ~l~~L~~~sll~~~~~~~~~~~~~~~H~lv~~~~~~~~~~ 539 (919)
.+++|.+++|+-..- ++....|+.|.++.||.+.....
T Consensus 303 mLe~L~~~gLFl~~L--dd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 303 MLEELERRGLFLQRL--DDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred HHHHHHhCCCceeee--cCCCceeehhHHHHHHHHhhhcc
Confidence 999999999986543 22336899999999999877654
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.30 E-value=6.7e-12 Score=146.97 Aligned_cols=216 Identities=19% Similarity=0.075 Sum_probs=116.0
Q ss_pred ceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccChhhhcCCCCcEEecCCCCCcccccCcccccc
Q 036584 611 FLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVELPIEINMM 690 (919)
Q Consensus 611 ~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L 690 (919)
++|++|+|++ |. +. .+|.. .++|++|+|++|.+..+|... .+|+.|++++| .+..+|..
T Consensus 242 ~~Lk~LdLs~-N~-----Lt---sLP~l---p~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N--~Lt~LP~~---- 300 (788)
T PRK15387 242 PELRTLEVSG-NQ-----LT---SLPVL---PPGLLELSIFSNPLTHLPALP---SGLCKLWIFGN--QLTSLPVL---- 300 (788)
T ss_pred CCCcEEEecC-Cc-----cC---cccCc---ccccceeeccCCchhhhhhch---hhcCEEECcCC--cccccccc----
Confidence 4555555555 44 44 44422 244555555555555555422 34555555555 45555532
Q ss_pred ccccccccccccccCCCCcCcCcccccccccccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEee
Q 036584 691 QELRHLIGNFKGTLPIENLTNLQTLKYVQSKSWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKL 770 (919)
Q Consensus 691 ~~L~~L~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 770 (919)
+++|+.|++..|....+..+ ..+|+.|.+.+|... ..+ . ...+|+.|+|+
T Consensus 301 ------------------p~~L~~LdLS~N~L~~Lp~l--p~~L~~L~Ls~N~L~---~LP---~---lp~~Lq~LdLS- 350 (788)
T PRK15387 301 ------------------PPGLQELSVSDNQLASLPAL--PSELCKLWAYNNQLT---SLP---T---LPSGLQELSVS- 350 (788)
T ss_pred ------------------ccccceeECCCCccccCCCC--cccccccccccCccc---ccc---c---cccccceEecC-
Confidence 23444554444431111111 134556666655321 111 1 11367777774
Q ss_pred cCCCCccCcCCCCCCCCceeEEEceec-CCCCcchhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccccCee
Q 036584 771 LDANSFASLQPLSHCQCLVDLRLSGRM-KKLPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHYVKK 849 (919)
Q Consensus 771 ~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~ 849 (919)
.|.+..++.+ +++|+.|++++|. ..+|. .+++|+.|+|++|.++..+ . ..++|+.|++++|.+..
T Consensus 351 --~N~Ls~LP~l--p~~L~~L~Ls~N~L~~LP~----l~~~L~~LdLs~N~Lt~LP-~---l~s~L~~LdLS~N~Lss-- 416 (788)
T PRK15387 351 --DNQLASLPTL--PSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSLP-V---LPSELKELMVSGNRLTS-- 416 (788)
T ss_pred --CCccCCCCCC--CcccceehhhccccccCcc----cccccceEEecCCcccCCC-C---cccCCCEEEccCCcCCC--
Confidence 3444333322 4567777777764 44553 2367888888888776322 2 13577888888655432
Q ss_pred EEEcCCCCcccceeEEecCCcccEEEccCCcccccceEEccccCccC
Q 036584 850 LGCRAEGFPLLEILQLDADGLVEWQVEEGAMPVLRGLKIAAEIPKLK 896 (919)
Q Consensus 850 ~~~~~~~f~~L~~L~l~~~~l~~~~~~~~~~p~L~~L~l~~nC~~l~ 896 (919)
++ ..+.+|+.|+++.|+++.+|.....+++|+.|++++ +.++
T Consensus 417 IP---~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~--N~Ls 458 (788)
T PRK15387 417 LP---MLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEG--NPLS 458 (788)
T ss_pred CC---cchhhhhhhhhccCcccccChHHhhccCCCeEECCC--CCCC
Confidence 22 123467778888777887776666788888888877 4454
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.25 E-value=9.4e-12 Score=146.83 Aligned_cols=61 Identities=16% Similarity=0.244 Sum_probs=38.7
Q ss_pred eEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccChhhhcCCCCcEEecCCCCCcccccCccc
Q 036584 612 LLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVELPIEI 687 (919)
Q Consensus 612 ~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~~i 687 (919)
+..+|++++ .. +. .+|..+. .+|+.|+|++|+|+.+|..+. .+|++|++++| .+..+|..+
T Consensus 179 ~~~~L~L~~-~~-----Lt---sLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N--~LtsLP~~l 239 (754)
T PRK15370 179 NKTELRLKI-LG-----LT---TIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSN--QLTSIPATL 239 (754)
T ss_pred CceEEEeCC-CC-----cC---cCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC--ccccCChhh
Confidence 456677766 55 55 5665543 467777777777777776554 46777777776 566666543
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.24 E-value=2.7e-13 Score=123.26 Aligned_cols=148 Identities=24% Similarity=0.283 Sum_probs=123.3
Q ss_pred CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccC
Q 036584 580 NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILP 659 (919)
Q Consensus 580 ~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP 659 (919)
++++.-|.++.+ . ....|.-+..+++|++|++++ ++ ++ ++|..|+.|+.||.|++.-|++..+|
T Consensus 32 ~s~ITrLtLSHN-----K--l~~vppnia~l~nlevln~~n-nq-----ie---~lp~~issl~klr~lnvgmnrl~~lp 95 (264)
T KOG0617|consen 32 MSNITRLTLSHN-----K--LTVVPPNIAELKNLEVLNLSN-NQ-----IE---ELPTSISSLPKLRILNVGMNRLNILP 95 (264)
T ss_pred hhhhhhhhcccC-----c--eeecCCcHHHhhhhhhhhccc-ch-----hh---hcChhhhhchhhhheecchhhhhcCc
Confidence 566777777776 2 234566678999999999999 88 88 99999999999999999999999999
Q ss_pred hhhhcCCCCcEEecCCCCCcccccCccccccccccccc---ccc-ccccCCCCcCcCccccccccc-ccchhhccCCCCC
Q 036584 660 SSIVKLQRLQTLDFSGDVGCPVELPIEINMMQELRHLI---GNF-KGTLPIENLTNLQTLKYVQSK-SWNKVNTAKLVNL 734 (919)
Q Consensus 660 ~~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~L~~L~---~~~-~~~~~i~~l~~L~~L~~~~~~-~~~~~~l~~l~~L 734 (919)
..++.++-|+.|||.+|+-.-..+|..+..|+.|+.|+ +.+ ..|..+|++++||.|.+-.+. ...+.+++.+++|
T Consensus 96 rgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~l 175 (264)
T KOG0617|consen 96 RGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRL 175 (264)
T ss_pred cccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHH
Confidence 99999999999999988444567899999999999984 333 345569999999999888877 6677888999999
Q ss_pred CeEEeeecC
Q 036584 735 RDLHIEEDE 743 (919)
Q Consensus 735 ~~L~i~~~~ 743 (919)
+.|+|.++.
T Consensus 176 relhiqgnr 184 (264)
T KOG0617|consen 176 RELHIQGNR 184 (264)
T ss_pred HHHhcccce
Confidence 999998875
No 23
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.21 E-value=2e-09 Score=114.46 Aligned_cols=192 Identities=22% Similarity=0.201 Sum_probs=118.7
Q ss_pred HHHHHHHhcC-CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccc
Q 036584 213 DLLLAKLLDK-EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLE 291 (919)
Q Consensus 213 ~~l~~~L~~~-~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~ 291 (919)
.++...+... ......+.|+|++|+|||||++.+++.... ..+ ...|+ +....+..+++..+...++....
T Consensus 29 ~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~----- 100 (269)
T TIGR03015 29 KRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE----- 100 (269)
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC-----
Confidence 4444444332 122458999999999999999999985332 121 22333 33345777888888888765321
Q ss_pred cCCHHHHHHHHHH----Hh-ccCceEEEEecccchh--HHHHHHhhCC---CCCCCcEEEEEecchhhhhhcC-------
Q 036584 292 TKTEEDLARSLRK----SL-EAYSYLMVIDDIWHKE--DWVSLKSAFP---ENKIGSRVIITTRIKDVAERSD------- 354 (919)
Q Consensus 292 ~~~~~~~~~~l~~----~l-~~~~~LlVlDdv~~~~--~~~~l~~~l~---~~~~gs~iivTtr~~~v~~~~~------- 354 (919)
..+.......+.+ .. .+++.+||+||++... .++.+..... .......|++|.... ......
T Consensus 101 ~~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l 179 (269)
T TIGR03015 101 GRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQL 179 (269)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHH
Confidence 1222333333333 22 6788999999998653 4555443221 122233556666543 221111
Q ss_pred --CCCceEecCCCChHhHHHHHHHHhccCCCC--chhhHHHHHHHHHHcCCcchHHHHHHHHh
Q 036584 355 --DRNYVHELRFLRQDESWQLFCERAFRNSKA--EKGLENLGREMVQKCDGLPLAIVVLGGLL 413 (919)
Q Consensus 355 --~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~--~~~~~~~~~~I~~~~~G~PLal~~~~~~l 413 (919)
.....+.+++++.+|..+++...+...... ..-..+..+.|++.++|.|..|..++..+
T Consensus 180 ~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 180 RQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 011467899999999999998776533221 22335788999999999999999988876
No 24
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.20 E-value=7.1e-11 Score=122.90 Aligned_cols=197 Identities=19% Similarity=0.141 Sum_probs=102.4
Q ss_pred ccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHH-------
Q 036584 205 PVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRI------- 277 (919)
Q Consensus 205 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i------- 277 (919)
|+||++++++|.+++..+. .+.+.|+|+.|+|||+|++.+.+. ....-..++|+...+..... ....+
T Consensus 1 F~gR~~el~~l~~~l~~~~--~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~~~~~-~~~~~~~~~~~~ 75 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP--SQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEESNES-SLRSFIEETSLA 75 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTBSHHH-HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhc--CcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccchhhh-HHHHHHHHHHHH
Confidence 7899999999999998753 568999999999999999999984 32221234555544443322 22222
Q ss_pred ---HHHhccccccccc------ccCCHHHHHHHHHHHh--ccCceEEEEecccchh-----------HHHHHHhhCCCCC
Q 036584 278 ---IKSFNIMTALEDL------ETKTEEDLARSLRKSL--EAYSYLMVIDDIWHKE-----------DWVSLKSAFPENK 335 (919)
Q Consensus 278 ---l~~l~~~~~~~~~------~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~-----------~~~~l~~~l~~~~ 335 (919)
...+......... ...........+.+.+ .+++.+||+||+.... .+..+........
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 155 (234)
T PF01637_consen 76 DELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQ 155 (234)
T ss_dssp CHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----T
T ss_pred HHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccC
Confidence 1112111100000 0111223334444444 3456999999996544 1122223323333
Q ss_pred CCcEEEEEecchhhhhh-------cCCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHH
Q 036584 336 IGSRVIITTRIKDVAER-------SDDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVV 408 (919)
Q Consensus 336 ~gs~iivTtr~~~v~~~-------~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~ 408 (919)
+.+ +|+++-...+... .......+.+++|+.+++++++...+... ..-+.-.+..++|+..+||+|..|..
T Consensus 156 ~~~-~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 156 NVS-IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp TEE-EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred Cce-EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 344 4455444444433 11112459999999999999998865433 11112345568999999999998764
No 25
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.19 E-value=1e-12 Score=119.57 Aligned_cols=161 Identities=20% Similarity=0.261 Sum_probs=97.4
Q ss_pred hhcccccceEEeecCCCccccChhhhcCCCCcEEecCCCCCcccccCccccccccccccccc----cccccCCCCcCcCc
Q 036584 638 KIGDLIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVELPIEINMMQELRHLIGN----FKGTLPIENLTNLQ 713 (919)
Q Consensus 638 ~i~~L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~L~~L~~~----~~~~~~i~~l~~L~ 713 (919)
.+.++.+...|.|+.|+++.+|+.|..|.+|+.|++.+| .+.++|..|+.|++|++|... ...|.++|.++.|+
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn--qie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN--QIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALE 105 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc--hhhhcChhhhhchhhhheecchhhhhcCccccCCCchhh
Confidence 344566667777788888888888888888888888777 777888888888888877432 24455677777777
Q ss_pred ccccccccccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCcCC-CCCCCCceeEE
Q 036584 714 TLKYVQSKSWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASLQP-LSHCQCLVDLR 792 (919)
Q Consensus 714 ~L~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~ 792 (919)
.|++..++- ....+ |..+..+..|+.|++ ++|.++-+++ ++.+.+|+.|.
T Consensus 106 vldltynnl------------------------~e~~l--pgnff~m~tlralyl---~dndfe~lp~dvg~lt~lqil~ 156 (264)
T KOG0617|consen 106 VLDLTYNNL------------------------NENSL--PGNFFYMTTLRALYL---GDNDFEILPPDVGKLTNLQILS 156 (264)
T ss_pred hhhcccccc------------------------ccccC--CcchhHHHHHHHHHh---cCCCcccCChhhhhhcceeEEe
Confidence 776655531 00111 133444445555555 3333322322 45555666666
Q ss_pred Eceec-CCCCcchhccCCCcceEEEEccCCCCCCchhhhc
Q 036584 793 LSGRM-KKLPEDMHVFLPNLECLSLSVPYPKEDPMPALEM 831 (919)
Q Consensus 793 L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~ 831 (919)
++.|. -.+|..++.+ ..|+.|++.+|.++ ..++.+++
T Consensus 157 lrdndll~lpkeig~l-t~lrelhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 157 LRDNDLLSLPKEIGDL-TRLRELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred eccCchhhCcHHHHHH-HHHHHHhcccceee-ecChhhhh
Confidence 65543 4566666666 77777777777664 34445444
No 26
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.09 E-value=4.8e-10 Score=121.43 Aligned_cols=278 Identities=16% Similarity=0.136 Sum_probs=148.4
Q ss_pred CCccccccCHHHHHHHHhcC---CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 036584 203 ENPVGFEDDTDLLLAKLLDK---EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIK 279 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 279 (919)
.+|||+++.++.+..++... ......+.|+|++|+|||+||+.+++. ....+ ..+..+.... ...+...+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~~-~~~l~~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALEK-PGDLAAILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhcC-chhHHHHHH
Confidence 36899999999999888742 223556889999999999999999984 33222 1222111111 111222222
Q ss_pred Hhccccc--ccccccCCHHHHHHHHHHHhccCceEEEEecccchhHHHHHHhhCCCCCCCcEEEEEecchhhhhhcCCC-
Q 036584 280 SFNIMTA--LEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHKEDWVSLKSAFPENKIGSRVIITTRIKDVAERSDDR- 356 (919)
Q Consensus 280 ~l~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~- 356 (919)
.+....- ..+.+..+ ....+.+...+.+.+..+|+|+..+...|. ..+ .+.+-|..||+...+.......
T Consensus 78 ~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~---~~~---~~~~li~~t~~~~~l~~~l~sR~ 150 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVR---LDL---PPFTLVGATTRAGMLTSPLRDRF 150 (305)
T ss_pred hcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCcccccee---ecC---CCeEEEEecCCccccCHHHHhhc
Confidence 2221100 00011111 112233444444444455555443332211 111 1244555667764443321111
Q ss_pred CceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHHHHHhcCC-ChHHHHHHHHHHHHhhcCC
Q 036584 357 NYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVLGGLLSTK-RPQEWREVRNHIWRHLRND 435 (919)
Q Consensus 357 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~~~~l~~~-~~~~w~~~~~~~~~~l~~~ 435 (919)
...+.+++++.++..+++.+.+..... .-..+.+..|++.|+|.|-.+..+...+... ....-..+.....
T Consensus 151 ~~~~~l~~l~~~e~~~il~~~~~~~~~--~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v------ 222 (305)
T TIGR00635 151 GIILRLEFYTVEELAEIVSRSAGLLNV--EIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIA------ 222 (305)
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHH------
Confidence 156889999999999999988764322 2224567889999999997765555433100 0000000000000
Q ss_pred chhhHHHHHhccccchHHHHHHHh-HhcCCCCCceecHHHHHHHHHHcCCcccCCCCCHHHHHHHHHH-HHHHccccccc
Q 036584 436 SIQVSYLLDLSFNDLSHQLKLCFL-YLSLFPEDFVINVEKLIRLLVAEGFIRQDEDRTMEEVAKDILD-ELINRSLIQVE 513 (919)
Q Consensus 436 ~~~i~~~l~~sy~~L~~~~k~c~~-~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~e~~~~~~l~-~L~~~sll~~~ 513 (919)
......+...|..++++.+..+. .+..++.+ .+..+.+.... | .....++..++ .|++.+||+..
T Consensus 223 -~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g--------~~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 223 -LKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---G--------EDADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred -HHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---C--------CCcchHHHhhhHHHHHcCCcccC
Confidence 11222256678899998887666 55666544 45554444433 1 12334667778 69999999744
Q ss_pred c
Q 036584 514 K 514 (919)
Q Consensus 514 ~ 514 (919)
.
T Consensus 290 ~ 290 (305)
T TIGR00635 290 P 290 (305)
T ss_pred C
Confidence 3
No 27
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.09 E-value=1.5e-09 Score=118.36 Aligned_cols=279 Identities=17% Similarity=0.150 Sum_probs=147.8
Q ss_pred CCCccccccCHHHHHHHHhcC---CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 036584 202 EENPVGFEDDTDLLLAKLLDK---EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRII 278 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 278 (919)
-.+|+|+++.++.+..++... ......+.|+|++|+||||||+.+++. ....+ .++..+ .......+..++
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~---~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANE--MGVNI---RITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHH--hCCCe---EEEecc-cccChHHHHHHH
Confidence 357999999999998888642 334567899999999999999999984 33222 122221 111112222222
Q ss_pred HHhcccccc--cccccCCHHHHHHHHHHHhccCceEEEEecccchhHHHHHHhhCCCCCCCcEEEEEecchhhhhhcCCC
Q 036584 279 KSFNIMTAL--EDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHKEDWVSLKSAFPENKIGSRVIITTRIKDVAERSDDR 356 (919)
Q Consensus 279 ~~l~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~ 356 (919)
..+...... .+.+..+ ....+.+...+.+.+..+|+|+..+...+ ...+ .+.+-|..|++...+.......
T Consensus 98 ~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~---~~~l---~~~~li~at~~~~~l~~~L~sR 170 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSI---RLDL---PPFTLIGATTRAGLLTSPLRDR 170 (328)
T ss_pred HhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCccccce---eecC---CCceEEeecCCcccCCHHHHHh
Confidence 222110000 0000000 01112222333333333444333221110 0011 1234455666644333221111
Q ss_pred -CceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhhcCC
Q 036584 357 -NYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVLGGLLSTKRPQEWREVRNHIWRHLRND 435 (919)
Q Consensus 357 -~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~~~~l~~~~~~~w~~~~~~~~~~l~~~ 435 (919)
...+.+++++.++..+++.+.+...... -..+.+..|++.|+|.|-.+..+...+. .|..... ...+...
T Consensus 171 f~~~~~l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~~--~~~I~~~ 241 (328)
T PRK00080 171 FGIVQRLEFYTVEELEKIVKRSARILGVE--IDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVKG--DGVITKE 241 (328)
T ss_pred cCeeeecCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHcC--CCCCCHH
Confidence 1568999999999999999887654332 2345788999999999965555544331 1111000 0000000
Q ss_pred c-hhhHHHHHhccccchHHHHHHHh-HhcCCCCCceecHHHHHHHHHHcCCcccCCCCCHHHHHHHHHH-HHHHcccccc
Q 036584 436 S-IQVSYLLDLSFNDLSHQLKLCFL-YLSLFPEDFVINVEKLIRLLVAEGFIRQDEDRTMEEVAKDILD-ELINRSLIQV 512 (919)
Q Consensus 436 ~-~~i~~~l~~sy~~L~~~~k~c~~-~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~e~~~~~~l~-~L~~~sll~~ 512 (919)
. ......+...+..|++..+..+. ....|+.+ .+..+.+.... | ...+.+++.++ .|++.+|++.
T Consensus 242 ~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g--------~~~~~~~~~~e~~Li~~~li~~ 309 (328)
T PRK00080 242 IADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---G--------EERDTIEDVYEPYLIQQGFIQR 309 (328)
T ss_pred HHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---C--------CCcchHHHHhhHHHHHcCCccc
Confidence 0 12234456778889888887775 66777766 46666664444 1 12234555566 8999999974
Q ss_pred cc
Q 036584 513 EK 514 (919)
Q Consensus 513 ~~ 514 (919)
..
T Consensus 310 ~~ 311 (328)
T PRK00080 310 TP 311 (328)
T ss_pred CC
Confidence 43
No 28
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.08 E-value=4.5e-10 Score=132.72 Aligned_cols=91 Identities=22% Similarity=0.247 Sum_probs=50.5
Q ss_pred CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccC
Q 036584 580 NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILP 659 (919)
Q Consensus 580 ~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP 659 (919)
.+.++.|.+.++. +. .+|..+ +.+|+.|+|++ |. +. .+|..+. .+|+.|+|++|.+..+|
T Consensus 198 p~~L~~L~Ls~N~------Lt-sLP~~l--~~nL~~L~Ls~-N~-----Lt---sLP~~l~--~~L~~L~Ls~N~L~~LP 257 (754)
T PRK15370 198 PEQITTLILDNNE------LK-SLPENL--QGNIKTLYANS-NQ-----LT---SIPATLP--DTIQEMELSINRITELP 257 (754)
T ss_pred ccCCcEEEecCCC------CC-cCChhh--ccCCCEEECCC-Cc-----cc---cCChhhh--ccccEEECcCCccCcCC
Confidence 4456666666651 11 223222 13566667766 55 55 5655443 35666777776666666
Q ss_pred hhhhcCCCCcEEecCCCCCcccccCcccccccccccc
Q 036584 660 SSIVKLQRLQTLDFSGDVGCPVELPIEINMMQELRHL 696 (919)
Q Consensus 660 ~~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~L~~L 696 (919)
..+. .+|++|++++| .+..+|..+. .+|+.|
T Consensus 258 ~~l~--s~L~~L~Ls~N--~L~~LP~~l~--~sL~~L 288 (754)
T PRK15370 258 ERLP--SALQSLDLFHN--KISCLPENLP--EELRYL 288 (754)
T ss_pred hhHh--CCCCEEECcCC--ccCccccccC--CCCcEE
Confidence 6553 36667777666 5556665443 244444
No 29
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.03 E-value=1.8e-10 Score=138.13 Aligned_cols=292 Identities=22% Similarity=0.165 Sum_probs=188.7
Q ss_pred CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhh-hhcccccceEEeecCCC-ccc
Q 036584 580 NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSE-KIGDLIHLKYLGLRNSN-IGI 657 (919)
Q Consensus 580 ~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~-~i~~L~~Lr~L~L~~~~-i~~ 657 (919)
...+|...+.++. . ...+. -..++.|++|-+.+ +.. .+. .++. .|..+++|++|||++|. +.+
T Consensus 522 ~~~~rr~s~~~~~-----~--~~~~~-~~~~~~L~tLll~~-n~~---~l~---~is~~ff~~m~~LrVLDLs~~~~l~~ 586 (889)
T KOG4658|consen 522 WNSVRRMSLMNNK-----I--EHIAG-SSENPKLRTLLLQR-NSD---WLL---EISGEFFRSLPLLRVLDLSGNSSLSK 586 (889)
T ss_pred hhheeEEEEeccc-----h--hhccC-CCCCCccceEEEee-cch---hhh---hcCHHHHhhCcceEEEECCCCCccCc
Confidence 5667777777662 1 11111 13444788888887 430 022 4443 37789999999999764 699
Q ss_pred cChhhhcCCCCcEEecCCCCCcccccCccccccccccccccccc----cccC-CCCcCcCccccccccc----ccchhhc
Q 036584 658 LPSSIVKLQRLQTLDFSGDVGCPVELPIEINMMQELRHLIGNFK----GTLP-IENLTNLQTLKYVQSK----SWNKVNT 728 (919)
Q Consensus 658 LP~~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~L~~L~~~~~----~~~~-i~~l~~L~~L~~~~~~----~~~~~~l 728 (919)
||.+|+.|-+|++|+++++ .+..+|.++.+|++|.+|+.... .+.+ ...|++|++|.++... .....++
T Consensus 587 LP~~I~~Li~LryL~L~~t--~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el 664 (889)
T KOG4658|consen 587 LPSSIGELVHLRYLDLSDT--GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKEL 664 (889)
T ss_pred CChHHhhhhhhhcccccCC--CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhh
Confidence 9999999999999999999 89999999999999999965322 2233 4559999999987765 4455666
Q ss_pred cCCCCCCeEEeeecCccccccccchhhHHhhcCCCc----EEEEeecCCCCccCcCCCCCCCCceeEEEceecCC--CCc
Q 036584 729 AKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLR----FLSVKLLDANSFASLQPLSHCQCLVDLRLSGRMKK--LPE 802 (919)
Q Consensus 729 ~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~--~p~ 802 (919)
..+.+|+.+.+..... ... ..+..+..|. .+.+.+ .........+..+.+|+.|.+.++... ...
T Consensus 665 ~~Le~L~~ls~~~~s~----~~~---e~l~~~~~L~~~~~~l~~~~--~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~ 735 (889)
T KOG4658|consen 665 ENLEHLENLSITISSV----LLL---EDLLGMTRLRSLLQSLSIEG--CSKRTLISSLGSLGNLEELSILDCGISEIVIE 735 (889)
T ss_pred hcccchhhheeecchh----HhH---hhhhhhHHHHHHhHhhhhcc--cccceeecccccccCcceEEEEcCCCchhhcc
Confidence 6777777777755431 111 2223333333 233222 111223445777889999999886431 112
Q ss_pred chhcc-----CCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccccCeeEEE---------cCCCCccccee-EEe-
Q 036584 803 DMHVF-----LPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHYVKKLGC---------RAEGFPLLEIL-QLD- 866 (919)
Q Consensus 803 ~~~~l-----~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~---------~~~~f~~L~~L-~l~- 866 (919)
|.... ++++..+.+.+|.... .+.+.-..|+|+.|.+.++......++. ..-.|+++..+ .+.
T Consensus 736 ~~~~~~~~~~f~~l~~~~~~~~~~~r-~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~ 814 (889)
T KOG4658|consen 736 WEESLIVLLCFPNLSKVSILNCHMLR-DLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCS 814 (889)
T ss_pred cccccchhhhHHHHHHHHhhcccccc-ccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeec
Confidence 21111 2577777777776432 3345567899999999965532221110 12346666666 455
Q ss_pred cCCcccEEEccCCcccccceEEccccCccC-Ccc
Q 036584 867 ADGLVEWQVEEGAMPVLRGLKIAAEIPKLK-IPE 899 (919)
Q Consensus 867 ~~~l~~~~~~~~~~p~L~~L~l~~nC~~l~-lp~ 899 (919)
...+.++....-.+|.|+.+.+.. ||++. +|.
T Consensus 815 l~~l~~i~~~~l~~~~l~~~~ve~-~p~l~~~P~ 847 (889)
T KOG4658|consen 815 LGGLPQLYWLPLSFLKLEELIVEE-CPKLGKLPL 847 (889)
T ss_pred CCCCceeEecccCccchhheehhc-CcccccCcc
Confidence 667777766667788899999999 99998 775
No 30
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.99 E-value=1.2e-08 Score=123.32 Aligned_cols=314 Identities=14% Similarity=0.143 Sum_probs=182.3
Q ss_pred CccccccCHHHHHHHHhcC-CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEE---eCCCC---CHHHHHHH
Q 036584 204 NPVGFEDDTDLLLAKLLDK-EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVS---VSQDY---KIKDLLLR 276 (919)
Q Consensus 204 ~~vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~---~~~~~---~~~~~~~~ 276 (919)
.++||+.+++.|...+... .....++.|.|..|||||+|+++|.. .+.+.+...+--. ..... .....+++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHHHHHHHH
Confidence 3789999999999999874 34567999999999999999999997 4433321111111 11111 12233444
Q ss_pred HHHHhccc-------------------ccc----------------c--ccccCCHH-----HHHHHHHHHh-ccCceEE
Q 036584 277 IIKSFNIM-------------------TAL----------------E--DLETKTEE-----DLARSLRKSL-EAYSYLM 313 (919)
Q Consensus 277 il~~l~~~-------------------~~~----------------~--~~~~~~~~-----~~~~~l~~~l-~~~~~Ll 313 (919)
++.++... ... + +....... ..+..+.... +.++.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 44443110 000 0 00011111 1233333333 4569999
Q ss_pred EEecccch-hHHHHHHhhCCCCCC-----CcEEE--EEecch-hhhhhcCCCCceEecCCCChHhHHHHHHHHhccCCCC
Q 036584 314 VIDDIWHK-EDWVSLKSAFPENKI-----GSRVI--ITTRIK-DVAERSDDRNYVHELRFLRQDESWQLFCERAFRNSKA 384 (919)
Q Consensus 314 VlDdv~~~-~~~~~l~~~l~~~~~-----gs~ii--vTtr~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 384 (919)
|+||+... ..--.+...+..... -..|. .|.+.. ............+.|.||+..+...+..........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~- 237 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL- 237 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc-
Confidence 99999433 221122221111110 11232 233322 222222233378999999999999999887654322
Q ss_pred chhhHHHHHHHHHHcCCcchHHHHHHHHhcCC-------ChHHHHHHHHHHHHhhcCCchhhHHHHHhccccchHHHHHH
Q 036584 385 EKGLENLGREMVQKCDGLPLAIVVLGGLLSTK-------RPQEWREVRNHIWRHLRNDSIQVSYLLDLSFNDLSHQLKLC 457 (919)
Q Consensus 385 ~~~~~~~~~~I~~~~~G~PLal~~~~~~l~~~-------~~~~w~~~~~~~~~~l~~~~~~i~~~l~~sy~~L~~~~k~c 457 (919)
...+....|+++..|+|+.+..+-..+... +...|..=..++. .....+.+...+..-.+.||...+..
T Consensus 238 --~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~--~~~~~~~vv~~l~~rl~kL~~~t~~V 313 (849)
T COG3899 238 --LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLG--ILATTDAVVEFLAARLQKLPGTTREV 313 (849)
T ss_pred --ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcC--CchhhHHHHHHHHHHHhcCCHHHHHH
Confidence 234567889999999999999998888764 2233332211111 00011335556888899999999999
Q ss_pred HhHhcCCCCCceecHHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHcccccccc-cCC-CceeEE---EecHHHHHH
Q 036584 458 FLYLSLFPEDFVINVEKLIRLLVAEGFIRQDEDRTMEEVAKDILDELINRSLIQVEK-RCW-GRISTC---RVHDLLRDL 532 (919)
Q Consensus 458 ~~~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~-~~~-~~~~~~---~~H~lv~~~ 532 (919)
+...|++- -.|+.+.|...|-. ...+++...++.|....++-..+ ... ...... ..||.|++.
T Consensus 314 l~~AA~iG--~~F~l~~La~l~~~----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqa 381 (849)
T COG3899 314 LKAAACIG--NRFDLDTLAALAED----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQA 381 (849)
T ss_pred HHHHHHhC--ccCCHHHHHHHHhh----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHH
Confidence 99999994 45677777777721 45667777777777766664332 111 111222 579999998
Q ss_pred HHHH
Q 036584 533 AIQK 536 (919)
Q Consensus 533 ~~~~ 536 (919)
|-..
T Consensus 382 aY~~ 385 (849)
T COG3899 382 AYNL 385 (849)
T ss_pred Hhcc
Confidence 8543
No 31
>PF05729 NACHT: NACHT domain
Probab=98.97 E-value=3.8e-09 Score=103.32 Aligned_cols=141 Identities=22% Similarity=0.279 Sum_probs=88.3
Q ss_pred EEEEEEecCCchHHHHHHHHHcccCccCC----CCEEEEEEeCCCCCHH---HHHHHHHHHhcccccccccccCCHHHHH
Q 036584 227 LVISIYGMGGLGKTTLARKLYHNNDVKNK----FDYCAWVSVSQDYKIK---DLLLRIIKSFNIMTALEDLETKTEEDLA 299 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~il~~l~~~~~~~~~~~~~~~~~~ 299 (919)
+++.|+|.+|+||||+++.++.+...... +...+|++.+...... .+...+..+..... ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~----------~~~~ 70 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI----------APIE 70 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch----------hhhH
Confidence 58999999999999999999975333322 4567777766544332 23333333322111 1111
Q ss_pred HHHHHHh-ccCceEEEEecccchhH---------HHHHH-hhCCC-CCCCcEEEEEecchhhhh---hcCCCCceEecCC
Q 036584 300 RSLRKSL-EAYSYLMVIDDIWHKED---------WVSLK-SAFPE-NKIGSRVIITTRIKDVAE---RSDDRNYVHELRF 364 (919)
Q Consensus 300 ~~l~~~l-~~~~~LlVlDdv~~~~~---------~~~l~-~~l~~-~~~gs~iivTtr~~~v~~---~~~~~~~~~~l~~ 364 (919)
..+...+ +.++++||+|++++... +..+. ..++. ..+++++|||+|...... ..... ..+++++
T Consensus 71 ~~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~-~~~~l~~ 149 (166)
T PF05729_consen 71 ELLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQA-QILELEP 149 (166)
T ss_pred HHHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCC-cEEEECC
Confidence 1222222 67899999999975422 22233 33333 356899999999877632 22222 6899999
Q ss_pred CChHhHHHHHHHHh
Q 036584 365 LRQDESWQLFCERA 378 (919)
Q Consensus 365 L~~~~~~~lf~~~~ 378 (919)
|++++..+++.++.
T Consensus 150 ~~~~~~~~~~~~~f 163 (166)
T PF05729_consen 150 FSEEDIKQYLRKYF 163 (166)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999997654
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.95 E-value=5.4e-11 Score=130.26 Aligned_cols=70 Identities=24% Similarity=0.265 Sum_probs=46.7
Q ss_pred ccchhhhccCceEEEEEeccCccccccccccc--hhhhhhhcccccceEEeecCCCccc-------cChhhhcCCCCcEE
Q 036584 601 RHLPLLFERFFLLRVFDVEADLDRESTLMHWS--NRLSEKIGDLIHLKYLGLRNSNIGI-------LPSSIVKLQRLQTL 671 (919)
Q Consensus 601 ~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~--~~lp~~i~~L~~Lr~L~L~~~~i~~-------LP~~l~~L~~L~~L 671 (919)
......+..+..|++|++++ +. +... ..++..+...+.|++|+++++.+.. ++..+..+++|+.|
T Consensus 13 ~~~~~~~~~l~~L~~l~l~~-~~-----l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L 86 (319)
T cd00116 13 ERATELLPKLLCLQVLRLEG-NT-----LGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQEL 86 (319)
T ss_pred cchHHHHHHHhhccEEeecC-CC-----CcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEE
Confidence 34456667777788888888 66 4210 1456666677778888888776642 33456667788888
Q ss_pred ecCCC
Q 036584 672 DFSGD 676 (919)
Q Consensus 672 ~L~~~ 676 (919)
++++|
T Consensus 87 ~l~~~ 91 (319)
T cd00116 87 DLSDN 91 (319)
T ss_pred EccCC
Confidence 88877
No 33
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.91 E-value=3.4e-07 Score=105.25 Aligned_cols=303 Identities=16% Similarity=0.128 Sum_probs=163.2
Q ss_pred cCCCCCCccccccCHHHHHHHHhcC---CCCcEEEEEEecCCchHHHHHHHHHcccCc---cCCC--CEEEEEEeCCCCC
Q 036584 198 SFAVEENPVGFEDDTDLLLAKLLDK---EQRRLVISIYGMGGLGKTTLARKLYHNNDV---KNKF--DYCAWVSVSQDYK 269 (919)
Q Consensus 198 ~~~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~---~~~f--~~~~wv~~~~~~~ 269 (919)
+...++.+.|||+++++|...|... .....++.|+|++|.|||+.++.|.+.... .... -.+++|.+....+
T Consensus 750 ~DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lst 829 (1164)
T PTZ00112 750 LDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVH 829 (1164)
T ss_pred cccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCC
Confidence 3345578999999999999988752 333467889999999999999999874211 1111 1367888877778
Q ss_pred HHHHHHHHHHHhcccccccccccCCHHHHHHHHHHHhc---cCceEEEEecccchh--HHHHHHhhCCC-CCCCcEEEE-
Q 036584 270 IKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSLE---AYSYLMVIDDIWHKE--DWVSLKSAFPE-NKIGSRVII- 342 (919)
Q Consensus 270 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~---~~~~LlVlDdv~~~~--~~~~l~~~l~~-~~~gs~iiv- 342 (919)
...++..|..++....+ ............+...+. +...+||||+++... .-+.|...+.. ...+++|+|
T Consensus 830 p~sIYqvI~qqL~g~~P---~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLI 906 (1164)
T PTZ00112 830 PNAAYQVLYKQLFNKKP---PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLI 906 (1164)
T ss_pred HHHHHHHHHHHHcCCCC---CccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEE
Confidence 88899999988855332 122333455556665552 234589999997442 11122211111 123455544
Q ss_pred -Eecchhhhh----hcCC--CCceEecCCCChHhHHHHHHHHhccCCC--CchhhHHHHHHHHHHcCCcchHHHHHHHHh
Q 036584 343 -TTRIKDVAE----RSDD--RNYVHELRFLRQDESWQLFCERAFRNSK--AEKGLENLGREMVQKCDGLPLAIVVLGGLL 413 (919)
Q Consensus 343 -Ttr~~~v~~----~~~~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~--~~~~~~~~~~~I~~~~~G~PLal~~~~~~l 413 (919)
++...+... .+.. ....+..++++.++-.+++..++..... ++..++-+|+.++...|-.=.||.++-.+.
T Consensus 907 GISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 907 AISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred EecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 333222111 1111 1134677999999999999998864321 122333333333333333334554444333
Q ss_pred cCC-----ChHHHHHHHHHHHHhhcCCchhhHHHHHhccccchHHHHHHHhHhcCC-C--CCceecHHHHHHHH--HHcC
Q 036584 414 STK-----RPQEWREVRNHIWRHLRNDSIQVSYLLDLSFNDLSHQLKLCFLYLSLF-P--EDFVINVEKLIRLL--VAEG 483 (919)
Q Consensus 414 ~~~-----~~~~w~~~~~~~~~~l~~~~~~i~~~l~~sy~~L~~~~k~c~~~~s~f-p--~~~~i~~~~li~~w--~aeg 483 (919)
..+ ..+...++.+.+. ...+.-....||.+.|..+..+... - ....++...+.... +++.
T Consensus 987 EikegskVT~eHVrkAleeiE----------~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~ 1056 (1164)
T PTZ00112 987 ENKRGQKIVPRDITEATNQLF----------DSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVET 1056 (1164)
T ss_pred hhcCCCccCHHHHHHHHHHHH----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHh
Confidence 221 1222222222211 1123344578888877655544322 1 12235555555443 2331
Q ss_pred Cccc-CCCCCHHHHHHHHHHHHHHcccccccc
Q 036584 484 FIRQ-DEDRTMEEVAKDILDELINRSLIQVEK 514 (919)
Q Consensus 484 ~i~~-~~~~~~e~~~~~~l~~L~~~sll~~~~ 514 (919)
.-.. ......+ ...+++.+|...|+|-...
T Consensus 1057 ~Gk~iGv~plTq-RV~d~L~eL~~LGIIl~ep 1087 (1164)
T PTZ00112 1057 SGKYIGMCSNNE-LFKIMLDKLVKMGILLIRP 1087 (1164)
T ss_pred hhhhcCCCCcHH-HHHHHHHHHHhcCeEEecC
Confidence 1000 0111222 5667778888888876544
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.88 E-value=9.5e-11 Score=120.82 Aligned_cols=126 Identities=18% Similarity=0.157 Sum_probs=93.5
Q ss_pred CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecC-CCcccc
Q 036584 580 NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRN-SNIGIL 658 (919)
Q Consensus 580 ~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~-~~i~~L 658 (919)
.+....+.+..+ .+..+.+..|+.++.||.|||++ +. |.. --|..|..|..|-.|-+.+ |+|+.+
T Consensus 66 P~~tveirLdqN------~I~~iP~~aF~~l~~LRrLdLS~-N~-----Is~--I~p~AF~GL~~l~~Lvlyg~NkI~~l 131 (498)
T KOG4237|consen 66 PPETVEIRLDQN------QISSIPPGAFKTLHRLRRLDLSK-NN-----ISF--IAPDAFKGLASLLSLVLYGNNKITDL 131 (498)
T ss_pred CCcceEEEeccC------CcccCChhhccchhhhceecccc-cc-----hhh--cChHhhhhhHhhhHHHhhcCCchhhh
Confidence 455666777666 35567888999999999999999 87 772 3388899999987776666 899999
Q ss_pred Ch-hhhcCCCCcEEecCCCCCcccccCc-ccccccccccccccc----cccc-CCCCcCcCccccccccc
Q 036584 659 PS-SIVKLQRLQTLDFSGDVGCPVELPI-EINMMQELRHLIGNF----KGTL-PIENLTNLQTLKYVQSK 721 (919)
Q Consensus 659 P~-~l~~L~~L~~L~L~~~~~~~~~lp~-~i~~L~~L~~L~~~~----~~~~-~i~~l~~L~~L~~~~~~ 721 (919)
|+ .+.+|..|+.|.+.-| .+..++. .+..|++|..|..+. .... .+..+.+++++.+-.+.
T Consensus 132 ~k~~F~gL~slqrLllNan--~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 132 PKGAFGGLSSLQRLLLNAN--HINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhHhhhHHHHHHHhcChh--hhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 98 5899999999999888 6666655 577888888884322 2222 26677777777655543
No 35
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.87 E-value=8e-10 Score=120.96 Aligned_cols=91 Identities=16% Similarity=0.098 Sum_probs=61.8
Q ss_pred CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCcccc--ccccccchhhhhhhcccccceEEeecCCCcc-
Q 036584 580 NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRE--STLMHWSNRLSEKIGDLIHLKYLGLRNSNIG- 656 (919)
Q Consensus 580 ~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~--~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~- 656 (919)
+.+++.|.+.++...+ .....++..+...+.|+.|++++ +... ...+. .++..+..+++|++|+|++|.+.
T Consensus 22 l~~L~~l~l~~~~l~~--~~~~~i~~~l~~~~~l~~l~l~~-~~~~~~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 22 LLCLQVLRLEGNTLGE--EAAKALASALRPQPSLKELCLSL-NETGRIPRGLQ---SLLQGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HhhccEEeecCCCCcH--HHHHHHHHHHhhCCCceEEeccc-cccCCcchHHH---HHHHHHHhcCceeEEEccCCCCCh
Confidence 5668899998883110 01123455667778899999988 6511 01111 45667788899999999999884
Q ss_pred ccChhhhcCCC---CcEEecCCC
Q 036584 657 ILPSSIVKLQR---LQTLDFSGD 676 (919)
Q Consensus 657 ~LP~~l~~L~~---L~~L~L~~~ 676 (919)
..+..+..+.+ |++|++++|
T Consensus 96 ~~~~~~~~l~~~~~L~~L~ls~~ 118 (319)
T cd00116 96 DGCGVLESLLRSSSLQELKLNNN 118 (319)
T ss_pred hHHHHHHHHhccCcccEEEeeCC
Confidence 55556666655 999999988
No 36
>PRK06893 DNA replication initiation factor; Validated
Probab=98.79 E-value=5.7e-08 Score=99.72 Aligned_cols=154 Identities=16% Similarity=0.230 Sum_probs=95.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKS 305 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 305 (919)
.+.+.|+|++|+|||+|++.+++. ...+...+.|+++... .... ..+.+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~---~~~~-------------------------~~~~~~ 88 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKS---QYFS-------------------------PAVLEN 88 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHh---hhhh-------------------------HHHHhh
Confidence 357899999999999999999984 3222334667766411 0000 011111
Q ss_pred hccCceEEEEecccch---hHHHH-HHhhCCC-CCCCcEEEE-Eecc---------hhhhhhcCCCCceEecCCCChHhH
Q 036584 306 LEAYSYLMVIDDIWHK---EDWVS-LKSAFPE-NKIGSRVII-TTRI---------KDVAERSDDRNYVHELRFLRQDES 370 (919)
Q Consensus 306 l~~~~~LlVlDdv~~~---~~~~~-l~~~l~~-~~~gs~iiv-Ttr~---------~~v~~~~~~~~~~~~l~~L~~~~~ 370 (919)
++ +.-+|||||+|.. ..|+. +...+.. ...|..+|| |+.. +++...+... ..+++++++.++.
T Consensus 89 ~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g-~~~~l~~pd~e~~ 166 (229)
T PRK06893 89 LE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWG-EIYQLNDLTDEQK 166 (229)
T ss_pred cc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcC-CeeeCCCCCHHHH
Confidence 22 2358999999863 45653 3332322 123555554 4443 3455554443 6889999999999
Q ss_pred HHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHHHHHh
Q 036584 371 WQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVLGGLL 413 (919)
Q Consensus 371 ~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~~~~l 413 (919)
++++++.+...... --+++..-|++++.|..-.+..+-..+
T Consensus 167 ~~iL~~~a~~~~l~--l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 167 IIVLQRNAYQRGIE--LSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 99999988754332 224567788999988877765554433
No 37
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.79 E-value=3.9e-08 Score=102.98 Aligned_cols=169 Identities=20% Similarity=0.168 Sum_probs=100.4
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFN 282 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 282 (919)
..++|-+..+.+ ++..+ ++.-..+||++|+||||||+.+.. .....|. .++...+-..-++++
T Consensus 30 ~HLlg~~~~lrr---~v~~~--~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~-----~~sAv~~gvkdlr~i----- 92 (436)
T COG2256 30 EHLLGEGKPLRR---AVEAG--HLHSMILWGPPGTGKTTLARLIAG--TTNAAFE-----ALSAVTSGVKDLREI----- 92 (436)
T ss_pred HhhhCCCchHHH---HHhcC--CCceeEEECCCCCCHHHHHHHHHH--hhCCceE-----EeccccccHHHHHHH-----
Confidence 345554444443 33343 477788999999999999999998 4444543 222221111112222
Q ss_pred ccccccccccCCHHHHHHHHHH-HhccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEE--Eecchhh--hhhcCC
Q 036584 283 IMTALEDLETKTEEDLARSLRK-SLEAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVII--TTRIKDV--AERSDD 355 (919)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv--Ttr~~~v--~~~~~~ 355 (919)
.+.-++ ...+++.+|++|.|+.- ..-+.+++ .-..|.-|+| ||.|+.. -...-+
T Consensus 93 ----------------~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp---~vE~G~iilIGATTENPsF~ln~ALlS 153 (436)
T COG2256 93 ----------------IEEARKNRLLGRRTILFLDEIHRFNKAQQDALLP---HVENGTIILIGATTENPSFELNPALLS 153 (436)
T ss_pred ----------------HHHHHHHHhcCCceEEEEehhhhcChhhhhhhhh---hhcCCeEEEEeccCCCCCeeecHHHhh
Confidence 222222 23588999999999743 33444444 3445776776 6666532 122223
Q ss_pred CCceEecCCCChHhHHHHHHHHhccCCCC----ch-hhHHHHHHHHHHcCCcchHHH
Q 036584 356 RNYVHELRFLRQDESWQLFCERAFRNSKA----EK-GLENLGREMVQKCDGLPLAIV 407 (919)
Q Consensus 356 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~----~~-~~~~~~~~I~~~~~G~PLal~ 407 (919)
...++.+++|+.++-..++.+.+...... .. -.+++...|+..++|---++-
T Consensus 154 R~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aL 210 (436)
T COG2256 154 RARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRAL 210 (436)
T ss_pred hhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHH
Confidence 33799999999999999998844332222 11 224466778888888765543
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=7.4e-10 Score=116.02 Aligned_cols=39 Identities=23% Similarity=0.236 Sum_probs=26.9
Q ss_pred hhcccccceEEeecCCCccccCh--hhhcCCCCcEEecCCC
Q 036584 638 KIGDLIHLKYLGLRNSNIGILPS--SIVKLQRLQTLDFSGD 676 (919)
Q Consensus 638 ~i~~L~~Lr~L~L~~~~i~~LP~--~l~~L~~L~~L~L~~~ 676 (919)
-=.++.+||...|+++.+...+. ....|++++.|||++|
T Consensus 116 kQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N 156 (505)
T KOG3207|consen 116 KQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN 156 (505)
T ss_pred HhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhh
Confidence 33566777777777777766653 5667777777777777
No 39
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.77 E-value=2.3e-07 Score=104.24 Aligned_cols=177 Identities=21% Similarity=0.166 Sum_probs=106.1
Q ss_pred CCccccccCHHH---HHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 036584 203 ENPVGFEDDTDL---LLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIK 279 (919)
Q Consensus 203 ~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 279 (919)
+++||++..+.. +..++.... ...+.|+|++|+||||||+.+++. ....| +.++.......-++.++
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~--~~~ilL~GppGtGKTtLA~~ia~~--~~~~~-----~~l~a~~~~~~~ir~ii- 81 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGR--LSSMILWGPPGTGKTTLARIIAGA--TDAPF-----EALSAVTSGVKDLREVI- 81 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCC--CceEEEECCCCCCHHHHHHHHHHH--hCCCE-----EEEecccccHHHHHHHH-
Confidence 468888777555 777776543 557889999999999999999984 33332 22222111111112221
Q ss_pred HhcccccccccccCCHHHHHHHHHHH-hccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEE--Eecchh--hhhh
Q 036584 280 SFNIMTALEDLETKTEEDLARSLRKS-LEAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVII--TTRIKD--VAER 352 (919)
Q Consensus 280 ~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv--Ttr~~~--v~~~ 352 (919)
...... ..+++.+|++|+++.. ...+.+...+.. |..++| ||.+.. +...
T Consensus 82 --------------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 82 --------------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPA 138 (413)
T ss_pred --------------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHH
Confidence 112111 1457889999999864 345566655543 444444 344332 2111
Q ss_pred cCCCCceEecCCCChHhHHHHHHHHhccCCCCc-hhhHHHHHHHHHHcCCcchHHHHHHHH
Q 036584 353 SDDRNYVHELRFLRQDESWQLFCERAFRNSKAE-KGLENLGREMVQKCDGLPLAIVVLGGL 412 (919)
Q Consensus 353 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~-~~~~~~~~~I~~~~~G~PLal~~~~~~ 412 (919)
.......+.+.+++.++.+.++.+.+....... .-..+....|++.|+|.|..+..+...
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 222226789999999999999988653311111 223456788999999999876554443
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.69 E-value=4.7e-09 Score=104.35 Aligned_cols=134 Identities=22% Similarity=0.194 Sum_probs=96.6
Q ss_pred ccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCcCCCCCCCCceeEEEceec-CCCCcchhc
Q 036584 728 TAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASLQPLSHCQCLVDLRLSGRM-KKLPEDMHV 806 (919)
Q Consensus 728 l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~ 806 (919)
...-..|+.|+++.+.. .... ++..-.|.++.|.+ +.|.+..+.++..+++|+.|+|++|. ..+..|-..
T Consensus 280 ~dTWq~LtelDLS~N~I---~~iD---ESvKL~Pkir~L~l---S~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~K 350 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLI---TQID---ESVKLAPKLRRLIL---SQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLK 350 (490)
T ss_pred cchHhhhhhccccccch---hhhh---hhhhhccceeEEec---cccceeeehhhhhcccceEeecccchhHhhhhhHhh
Confidence 33445677778887752 2222 56667788898888 45666566678888999999999885 555656666
Q ss_pred cCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccccCeeEEEcCCCCcccceeEEecCCcccE
Q 036584 807 FLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHYVKKLGCRAEGFPLLEILQLDADGLVEW 873 (919)
Q Consensus 807 l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~l~~~~l~~~ 873 (919)
+ .|+++|.|+.|.+ +.+..++.|-+|.+|++++|++...+-+-..|.+|+|+.|.|..|.+..+
T Consensus 351 L-GNIKtL~La~N~i--E~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 351 L-GNIKTLKLAQNKI--ETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred h-cCEeeeehhhhhH--hhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 6 8999999999987 35677888889999999877764444445567888888888886656544
No 41
>PF13173 AAA_14: AAA domain
Probab=98.68 E-value=6.2e-08 Score=89.73 Aligned_cols=121 Identities=20% Similarity=0.214 Sum_probs=82.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKS 305 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 305 (919)
.+++.|.|+.|+|||||+++++.+.. ....+++++.......... ..+ +.+.+.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~--------------------~~~-~~~~~~~~ 57 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA--------------------DPD-LLEYFLEL 57 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh--------------------hhh-hHHHHHHh
Confidence 46899999999999999999997533 3345777776643221000 000 22333333
Q ss_pred hccCceEEEEecccchhHHHHHHhhCCCCCCCcEEEEEecchhhhhh-----cCCCCceEecCCCChHhH
Q 036584 306 LEAYSYLMVIDDIWHKEDWVSLKSAFPENKIGSRVIITTRIKDVAER-----SDDRNYVHELRFLRQDES 370 (919)
Q Consensus 306 l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~-----~~~~~~~~~l~~L~~~~~ 370 (919)
...++.+|+||++....+|......+.+..+..+|++|+.+...... ..+....+++.||+..|.
T Consensus 58 ~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 58 IKPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred hccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 43467899999999998998888877776667899999987665532 222225789999998774
No 42
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.64 E-value=4e-09 Score=109.10 Aligned_cols=125 Identities=14% Similarity=0.072 Sum_probs=99.3
Q ss_pred CCCCeeEEEEecCCCCccccccC--CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchh
Q 036584 557 VISSCRRQAIYSHSPSYFWLHHG--NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNR 634 (919)
Q Consensus 557 ~~~~~r~l~l~~~~~~~~~~~~~--~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~ 634 (919)
.|...--+-+..+.+..++...- +++||.|.++++. +..+-|..|..++.|-.|-+-+++. |+ +
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~------Is~I~p~AF~GL~~l~~Lvlyg~Nk-----I~---~ 130 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN------ISFIAPDAFKGLASLLSLVLYGNNK-----IT---D 130 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceecccccc------hhhcChHhhhhhHhhhHHHhhcCCc-----hh---h
Confidence 45666677777777777775543 8999999999982 4457788999999888877666466 88 8
Q ss_pred hhhh-hcccccceEEeecCCCccccCh-hhhcCCCCcEEecCCCCCcccccCc-cccccccccccc
Q 036584 635 LSEK-IGDLIHLKYLGLRNSNIGILPS-SIVKLQRLQTLDFSGDVGCPVELPI-EINMMQELRHLI 697 (919)
Q Consensus 635 lp~~-i~~L~~Lr~L~L~~~~i~~LP~-~l~~L~~L~~L~L~~~~~~~~~lp~-~i~~L~~L~~L~ 697 (919)
+|.. |++|..|+.|.+..|++.-++. .+..|++|..|.+..| .+..++. .+..+..++++.
T Consensus 131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn--~~q~i~~~tf~~l~~i~tlh 194 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN--KIQSICKGTFQGLAAIKTLH 194 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch--hhhhhccccccchhccchHh
Confidence 8855 7899999999999999966654 6899999999999999 7888887 677788888773
No 43
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.61 E-value=2e-07 Score=98.54 Aligned_cols=290 Identities=20% Similarity=0.220 Sum_probs=184.4
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCE-EEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDY-CAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRK 304 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 304 (919)
.+.+.++|.|||||||++-.+.. ...-|.. +.++...+-.+...+.-.+...+.... .+-+.....+..
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~-------~~g~~~~~~~~~ 83 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHV-------QPGDSAVDTLVR 83 (414)
T ss_pred hheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccc-------ccchHHHHHHHH
Confidence 67999999999999999999886 5566744 445555444444444444444354422 122334555667
Q ss_pred HhccCceEEEEecccchhH-HHHHHhhCCCCCCCcEEEEEecchhhhhhcCCCCceEecCCCChH-hHHHHHHHHhccCC
Q 036584 305 SLEAYSYLMVIDDIWHKED-WVSLKSAFPENKIGSRVIITTRIKDVAERSDDRNYVHELRFLRQD-ESWQLFCERAFRNS 382 (919)
Q Consensus 305 ~l~~~~~LlVlDdv~~~~~-~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~~l~~L~~~-~~~~lf~~~~~~~~ 382 (919)
...+++.++|+||.....+ -..+...+..+...-.|+.|+|...... + .....+++|+.. ++.++|...+....
T Consensus 84 ~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~---g-e~~~~~~~L~~~d~a~~lf~~ra~~~~ 159 (414)
T COG3903 84 RIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVA---G-EVHRRVPSLSLFDEAIELFVCRAVLVA 159 (414)
T ss_pred HHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhccc---c-cccccCCccccCCchhHHHHHHHHHhc
Confidence 7788899999999866532 2223333444444566888888654432 1 256677888765 78899887765443
Q ss_pred CC---chhhHHHHHHHHHHcCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhhcCCc-------hhhHHHHHhccccchH
Q 036584 383 KA---EKGLENLGREMVQKCDGLPLAIVVLGGLLSTKRPQEWREVRNHIWRHLRNDS-------IQVSYLLDLSFNDLSH 452 (919)
Q Consensus 383 ~~---~~~~~~~~~~I~~~~~G~PLal~~~~~~l~~~~~~~w~~~~~~~~~~l~~~~-------~~i~~~l~~sy~~L~~ 452 (919)
.. .........+|+++.+|.|++|..++...+.-...+-...++.-...+.+.. ....+.+.+||.-|..
T Consensus 160 ~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg 239 (414)
T COG3903 160 LSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG 239 (414)
T ss_pred cceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh
Confidence 33 3444567889999999999999999998887743333332222222222211 5678899999999999
Q ss_pred HHHHHHhHhcCCCCCceecHHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHcccccccccCCCceeEEEecHHHHHH
Q 036584 453 QLKLCFLYLSLFPEDFVINVEKLIRLLVAEGFIRQDEDRTMEEVAKDILDELINRSLIQVEKRCWGRISTCRVHDLLRDL 532 (919)
Q Consensus 453 ~~k~c~~~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~H~lv~~~ 532 (919)
..+-.|.-++.|...|.-. ...|.+-|-... -+.......+-.+++.+++...+ ......|+.-+-+|.|
T Consensus 240 we~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~----~~~y~~~~a~~ll~~kslv~a~~--~~~~a~~Rl~eT~r~Y 309 (414)
T COG3903 240 WERALFGRLAVFVGGFDLG----LALAVAAGADVD----VPRYLVLLALTLLVDKSLVVALD--LLGRARYRLLETGRRY 309 (414)
T ss_pred HHHHHhcchhhhhhhhccc----HHHHHhcCCccc----cchHHHHHHHHHHhhccchhhhh--hhhHHHHHHHHHHHHH
Confidence 9999999999998776544 344554442210 11222344466778888876554 1112346666777777
Q ss_pred HHHHhhh
Q 036584 533 AIQKAKE 539 (919)
Q Consensus 533 ~~~~~~~ 539 (919)
+..+..+
T Consensus 310 alaeL~r 316 (414)
T COG3903 310 ALAELHR 316 (414)
T ss_pred HHHHHHh
Confidence 7766654
No 44
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=7e-06 Score=89.43 Aligned_cols=289 Identities=17% Similarity=0.186 Sum_probs=169.4
Q ss_pred CCCccccccCHHHHHHHHhcC--CCCcEEEEEEecCCchHHHHHHHHHcccCccCCC--CEEEEEEeCCCCCHHHHHHHH
Q 036584 202 EENPVGFEDDTDLLLAKLLDK--EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKF--DYCAWVSVSQDYKIKDLLLRI 277 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i 277 (919)
+..+.+|+++++++...|... +....-+.|+|.+|.|||+.++.+++. +.... ..+++|++....+...++..|
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQVLSKI 93 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHHHHHHH
Confidence 445999999999999888753 222334899999999999999999984 33222 117999999999999999999
Q ss_pred HHHhcccccccccccCCHHHHHHHHHHHh--ccCceEEEEecccchhHH--HHHHhhCCCCCC-CcEEEE--Eecchhhh
Q 036584 278 IKSFNIMTALEDLETKTEEDLARSLRKSL--EAYSYLMVIDDIWHKEDW--VSLKSAFPENKI-GSRVII--TTRIKDVA 350 (919)
Q Consensus 278 l~~l~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~~~--~~l~~~l~~~~~-gs~iiv--Ttr~~~v~ 350 (919)
+.+++.. ........+....+.+.+ .++.+++|||+++....- +.+...+..... .++|++ .+-+....
T Consensus 94 ~~~~~~~----p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~ 169 (366)
T COG1474 94 LNKLGKV----PLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFL 169 (366)
T ss_pred HHHcCCC----CCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHH
Confidence 9999731 234566678888888888 468899999999754321 222222222221 454433 33333222
Q ss_pred hhcCC------CCceEecCCCChHhHHHHHHHHhccC---CCCchhhHHHHHHHHHHcCCcc-hHHHHHHHH--hcCC--
Q 036584 351 ERSDD------RNYVHELRFLRQDESWQLFCERAFRN---SKAEKGLENLGREMVQKCDGLP-LAIVVLGGL--LSTK-- 416 (919)
Q Consensus 351 ~~~~~------~~~~~~l~~L~~~~~~~lf~~~~~~~---~~~~~~~~~~~~~I~~~~~G~P-Lal~~~~~~--l~~~-- 416 (919)
....+ ....+..++-+.+|-.+++..++-.. ....+...+.+..++..-+|-- .|+..+-.. ++..
T Consensus 170 ~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~ 249 (366)
T COG1474 170 DYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREG 249 (366)
T ss_pred HHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhC
Confidence 22211 11347889999999999999887433 2224444555555555555532 333322221 1111
Q ss_pred ----ChHHHHHHHHHHHHhhcCCchhhHHHHHhccccchHHHHHHHhHhcCCCCCceecHHHHHHH--HHHcCCcccCCC
Q 036584 417 ----RPQEWREVRNHIWRHLRNDSIQVSYLLDLSFNDLSHQLKLCFLYLSLFPEDFVINVEKLIRL--LVAEGFIRQDED 490 (919)
Q Consensus 417 ----~~~~w~~~~~~~~~~l~~~~~~i~~~l~~sy~~L~~~~k~c~~~~s~fp~~~~i~~~~li~~--w~aeg~i~~~~~ 490 (919)
+.+.-..+..... ...+.-....||.+.|..+......- ..+....+... ++.+.+-.
T Consensus 250 ~~~v~~~~v~~a~~~~~----------~~~~~~~~~~L~~~~ki~L~~i~~~~--~~~~~~~~y~~y~~~~~~~~~---- 313 (366)
T COG1474 250 SRKVSEDHVREAQEEIE----------RDVLEEVLKTLPLHQKIVLLAIVELT--VEISTGELYDVYESLCERLRT---- 313 (366)
T ss_pred CCCcCHHHHHHHHHHhh----------HHHHHHHHHcCCHhHHHHHHHHHHhc--CCCChHHHHHHHHHHHhhhCc----
Confidence 1122222211111 11233346778888776554433332 23444444332 22322211
Q ss_pred CCHHHHHHHHHHHHHHcccccccc
Q 036584 491 RTMEEVAKDILDELINRSLIQVEK 514 (919)
Q Consensus 491 ~~~e~~~~~~l~~L~~~sll~~~~ 514 (919)
.+....+++.+|...+++....
T Consensus 314 --~~~~~~~ii~~L~~lgiv~~~~ 335 (366)
T COG1474 314 --SQRRFSDIISELEGLGIVSASL 335 (366)
T ss_pred --hHHHHHHHHHHHHhcCeEEeee
Confidence 3445667889999999987655
No 45
>PRK04195 replication factor C large subunit; Provisional
Probab=98.56 E-value=4.5e-06 Score=95.87 Aligned_cols=243 Identities=13% Similarity=0.119 Sum_probs=136.6
Q ss_pred CCccccccCHHHHHHHHhcC--CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 036584 203 ENPVGFEDDTDLLLAKLLDK--EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKS 280 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 280 (919)
.+++|.++.++.+.+|+..- ....+.+.|+|++|+||||+|+.++++. . |+ ++-++.+...+. ..+..++..
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el--~--~~-~ielnasd~r~~-~~i~~~i~~ 87 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY--G--WE-VIELNASDQRTA-DVIERVAGE 87 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc--C--CC-EEEEcccccccH-HHHHHHHHH
Confidence 46899999999999998753 2226789999999999999999999843 2 32 333344432222 223333322
Q ss_pred hcccccccccccCCHHHHHHHHHHHhccCceEEEEecccch------hHHHHHHhhCCCCCCCcEEEEEecch-hhhh-h
Q 036584 281 FNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHK------EDWVSLKSAFPENKIGSRVIITTRIK-DVAE-R 352 (919)
Q Consensus 281 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~------~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~-~ 352 (919)
...... ....++-+||||+++.. ..+..+...+.. .+..||+|+.+. .... .
T Consensus 88 ~~~~~s------------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 88 AATSGS------------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRE 147 (482)
T ss_pred hhccCc------------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhh
Confidence 211100 01135789999999754 235555555542 234466655432 2211 1
Q ss_pred cCCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHHHHHhcCC----ChHHHHHHHHHH
Q 036584 353 SDDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVLGGLLSTK----RPQEWREVRNHI 428 (919)
Q Consensus 353 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~~~~l~~~----~~~~w~~~~~~~ 428 (919)
.......+.+.+++.++....+.+.+...... -..++...|++.++|..-.+......+... +.+....+..
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~--i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~-- 223 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEGIE--CDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR-- 223 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc--
Confidence 22223678999999999999888776543322 224677889999999887665444443322 1222221110
Q ss_pred HHhhcCCchhhHHHHHhccc-cchHHHHHHHhHhcCCCCCceecHHHHHHHHHHcCCccc
Q 036584 429 WRHLRNDSIQVSYLLDLSFN-DLSHQLKLCFLYLSLFPEDFVINVEKLIRLLVAEGFIRQ 487 (919)
Q Consensus 429 ~~~l~~~~~~i~~~l~~sy~-~L~~~~k~c~~~~s~fp~~~~i~~~~li~~w~aeg~i~~ 487 (919)
.+...+++.++..-+. .-+......+..+ .++. ..+..|+.|++...
T Consensus 224 ----~d~~~~if~~l~~i~~~k~~~~a~~~~~~~-------~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 224 ----RDREESIFDALDAVFKARNADQALEASYDV-------DEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred ----CCCCCCHHHHHHHHHCCCCHHHHHHHHHcc-------cCCH-HHHHHHHHhccccc
Confidence 1112445555554433 2223333322221 1233 35778999999754
No 46
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.55 E-value=3.4e-07 Score=85.42 Aligned_cols=115 Identities=21% Similarity=0.296 Sum_probs=80.3
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCcc---CCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVK---NKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSL 302 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l 302 (919)
.+++.|+|.+|+|||++++.++++.... ..-..++|+.+....+...+...++.++..... ...+.+.+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~l~~~~ 79 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK----SRQTSDELRSLL 79 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS----STS-HHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc----ccCCHHHHHHHH
Confidence 5689999999999999999999852110 013447799998888999999999999987543 134567888888
Q ss_pred HHHhccCc-eEEEEecccch-h--HHHHHHhhCCCCCCCcEEEEEecc
Q 036584 303 RKSLEAYS-YLMVIDDIWHK-E--DWVSLKSAFPENKIGSRVIITTRI 346 (919)
Q Consensus 303 ~~~l~~~~-~LlVlDdv~~~-~--~~~~l~~~l~~~~~gs~iivTtr~ 346 (919)
.+.+...+ .+||+|+++.. . .++.+..... ..+.++|+..+.
T Consensus 80 ~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 80 IDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 88886555 59999999765 2 3444444333 567788887764
No 47
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.54 E-value=7e-07 Score=92.18 Aligned_cols=167 Identities=16% Similarity=0.197 Sum_probs=97.8
Q ss_pred cCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccc
Q 036584 210 DDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALED 289 (919)
Q Consensus 210 ~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~ 289 (919)
..++.+.+++.. .....|.|+|++|+|||+||+.+++. ........++++++.-.. ..
T Consensus 24 ~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~------~~------------ 81 (226)
T TIGR03420 24 ELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQ------AD------------ 81 (226)
T ss_pred HHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHH------hH------------
Confidence 345566665543 23568999999999999999999984 222333456666542211 00
Q ss_pred cccCCHHHHHHHHHHHhccCceEEEEecccchh---HHH-HHHhhCCC-CCCCcEEEEEecchh---------hhhhcCC
Q 036584 290 LETKTEEDLARSLRKSLEAYSYLMVIDDIWHKE---DWV-SLKSAFPE-NKIGSRVIITTRIKD---------VAERSDD 355 (919)
Q Consensus 290 ~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---~~~-~l~~~l~~-~~~gs~iivTtr~~~---------v~~~~~~ 355 (919)
..+...+++ .-+|||||++... .|. .+...+.. ...+..+|+||+... +...+..
T Consensus 82 ----------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~ 150 (226)
T TIGR03420 82 ----------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAW 150 (226)
T ss_pred ----------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhc
Confidence 011112222 3489999997653 333 34333322 123347888887532 1112211
Q ss_pred CCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHHHHH
Q 036584 356 RNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVLGGL 412 (919)
Q Consensus 356 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~~~~ 412 (919)
...+++++++.++...++...+-.... +--.+..+.|++.+.|.|..+..+...
T Consensus 151 -~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 151 -GLVFQLPPLSDEEKIAALQSRAARRGL--QLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred -CeeEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 257899999999999998775432221 122345677777888888777665443
No 48
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=2.5e-06 Score=94.07 Aligned_cols=194 Identities=14% Similarity=0.154 Sum_probs=112.3
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFN 282 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 282 (919)
.+++|.+..++.+.+.+..+. -...+.++|+.|+||||+|+.+++...-...+. ..++..-....++.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHhcCCC
Confidence 568999999999888887653 345789999999999999999987422111110 000100111111111110
Q ss_pred cccc-ccccccCCHHHHHHHHHHHh-----ccCceEEEEecccchh--HHHHHHhhCCCCCCCcEEEEEecch-hhhhhc
Q 036584 283 IMTA-LEDLETKTEEDLARSLRKSL-----EAYSYLMVIDDIWHKE--DWVSLKSAFPENKIGSRVIITTRIK-DVAERS 353 (919)
Q Consensus 283 ~~~~-~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~ 353 (919)
.... .........++ .+.+.+.+ .+++-++|+|+++... .++.++..+.......++|++|.+. .+....
T Consensus 88 ~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI 166 (363)
T PRK14961 88 LDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTI 166 (363)
T ss_pred CceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHH
Confidence 0000 00000011122 12222222 2345699999998654 5777877776655567777766543 333333
Q ss_pred CCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHH
Q 036584 354 DDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIV 407 (919)
Q Consensus 354 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~ 407 (919)
......+++++++.++..+.+.+.+..... .-.++.+..|++.++|.|-.+.
T Consensus 167 ~SRc~~~~~~~l~~~el~~~L~~~~~~~g~--~i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 167 LSRCLQFKLKIISEEKIFNFLKYILIKESI--DTDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred HhhceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 333368999999999999988876644322 1223567789999999886443
No 49
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.53 E-value=5.2e-06 Score=95.53 Aligned_cols=198 Identities=15% Similarity=0.103 Sum_probs=115.9
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFN 282 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 282 (919)
.++||.+..++.|.+++..+. -...+.++|..|+||||+|+.+.+...-...+. +..+..-..++.|...-.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I~~G~h 87 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREIDEGRF 87 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHHhcCCC
Confidence 478999999999999987653 244667999999999999998887422111110 011111112222211100
Q ss_pred cccc-ccccccCCHHHHHHHHHHH----hccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecchh-hhhhcC
Q 036584 283 IMTA-LEDLETKTEEDLARSLRKS----LEAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRIKD-VAERSD 354 (919)
Q Consensus 283 ~~~~-~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~ 354 (919)
.... .........+++.+.+... ..++.-++|||+++.. ..|+.++..+-.-....++|++|.+.. +..-+.
T Consensus 88 ~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIr 167 (830)
T PRK07003 88 VDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVL 167 (830)
T ss_pred ceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhh
Confidence 0000 0000011122222222221 1345568999999865 457888777765555778887776643 332223
Q ss_pred CCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcch-HHHHHH
Q 036584 355 DRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPL-AIVVLG 410 (919)
Q Consensus 355 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PL-al~~~~ 410 (919)
.....+.++.++.++..+.+.+.+..... .-..+..+.|++.++|..- |+..+-
T Consensus 168 SRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI--~id~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 168 SRCLQFNLKQMPAGHIVSHLERILGEERI--AFEPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred hheEEEecCCcCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33378999999999999999887644332 2234567889999998764 555433
No 50
>PTZ00202 tuzin; Provisional
Probab=98.52 E-value=9.6e-06 Score=86.93 Aligned_cols=164 Identities=15% Similarity=0.144 Sum_probs=104.3
Q ss_pred CCCCCccccccCHHHHHHHHhcCC-CCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 036584 200 AVEENPVGFEDDTDLLLAKLLDKE-QRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRII 278 (919)
Q Consensus 200 ~~~~~~vGr~~~~~~l~~~L~~~~-~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 278 (919)
.+...|+||+++...+...|...+ ...+++.|.|++|+|||||++.+... .. ...++++.. +..++++.++
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~--l~---~~qL~vNpr---g~eElLr~LL 330 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRK--EG---MPAVFVDVR---GTEDTLRSVV 330 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhc--CC---ceEEEECCC---CHHHHHHHHH
Confidence 456789999999999999997643 23569999999999999999999973 22 113333333 6799999999
Q ss_pred HHhcccccccccccCCHHHHHHHHHHHh-----c-cCceEEEEec--ccchh-HHHHHHhhCCCCCCCcEEEEEecchhh
Q 036584 279 KSFNIMTALEDLETKTEEDLARSLRKSL-----E-AYSYLMVIDD--IWHKE-DWVSLKSAFPENKIGSRVIITTRIKDV 349 (919)
Q Consensus 279 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l-----~-~~~~LlVlDd--v~~~~-~~~~l~~~l~~~~~gs~iivTtr~~~v 349 (919)
.+|+.... ....++.+.|.+.+ . +++.+||+-= -.+.. .+.+.. .+.....-|+|++---.+.+
T Consensus 331 ~ALGV~p~------~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evplesl 403 (550)
T PTZ00202 331 KALGVPNV------EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESL 403 (550)
T ss_pred HHcCCCCc------ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhc
Confidence 99996321 12234444444433 2 5666777632 22221 222221 23333345777765443332
Q ss_pred h--hhcCCCCceEecCCCChHhHHHHHHHHh
Q 036584 350 A--ERSDDRNYVHELRFLRQDESWQLFCERA 378 (919)
Q Consensus 350 ~--~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 378 (919)
. ...-+....|.+++++.++|.+.-.+..
T Consensus 404 t~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 404 TIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred chhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 2 2222333789999999999999876543
No 51
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.52 E-value=1.6e-06 Score=95.62 Aligned_cols=197 Identities=14% Similarity=0.074 Sum_probs=110.0
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCC-EEEEEEeCCCCCHH-HHHH---HH
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFD-YCAWVSVSQDYKIK-DLLL---RI 277 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~-~~~~---~i 277 (919)
++++|++..++.+..++..+. .+.+.++|++|+||||+|+.+++... ...+. ..+.++++.-.... ..+. ..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPN--LPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVEDPRF 91 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhcCcch
Confidence 568899999999988887653 45688999999999999999987421 12221 23444443211000 0000 00
Q ss_pred HHHhcccccccccccCCHHHHHHHHH-HH---h--ccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecch-h
Q 036584 278 IKSFNIMTALEDLETKTEEDLARSLR-KS---L--EAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRIK-D 348 (919)
Q Consensus 278 l~~l~~~~~~~~~~~~~~~~~~~~l~-~~---l--~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~-~ 348 (919)
...+.... . .........+.+. .. . .+.+-+||+||+... .....+...+......+++|+|+... .
T Consensus 92 ~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 92 AHFLGTDK---R-IRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred hhhhhhhh---h-hccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 00000000 0 0000111222221 11 1 234558999999754 23445555554444456787777543 2
Q ss_pred hhhhcCCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHH
Q 036584 349 VAERSDDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVV 408 (919)
Q Consensus 349 v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~ 408 (919)
+..........+.+.+++.++...++.+.+...... -..+.+..|++.++|.+-.+..
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 222222333678899999999999988876443322 2345678888999888766544
No 52
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.50 E-value=3.5e-06 Score=91.27 Aligned_cols=177 Identities=15% Similarity=0.206 Sum_probs=115.2
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHccc----CccCCCCEEEEEEe-CCCCCHHHHHHHH
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNN----DVKNKFDYCAWVSV-SQDYKIKDLLLRI 277 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~----~~~~~f~~~~wv~~-~~~~~~~~~~~~i 277 (919)
.+++|-+..++.+..++..+. -.....++|+.|+||||+|+.+++.. ....|.|...|... +.....+. ++++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~ 81 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNI 81 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHH
Confidence 357888888888888887653 34577899999999999999998731 22356676666542 22222222 2223
Q ss_pred HHHhcccccccccccCCHHHHHHHHHHHhccCceEEEEeccc--chhHHHHHHhhCCCCCCCcEEEEEecchhhh-hhcC
Q 036584 278 IKSFNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIW--HKEDWVSLKSAFPENKIGSRVIITTRIKDVA-ERSD 354 (919)
Q Consensus 278 l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~-~~~~ 354 (919)
.+.+... -..+++-++|+|+++ +.+.++.++..+.....++.+|++|.+.+.. ..+.
T Consensus 82 ~~~~~~~--------------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 82 IEEVNKK--------------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHhcC--------------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 2222110 112455677777765 4567899999998877889898888665422 2222
Q ss_pred CCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHH
Q 036584 355 DRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIV 407 (919)
Q Consensus 355 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~ 407 (919)
.....+.+.+++.++....+.+.... . ..+.+..++..++|.|.-+.
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYND--I----KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhcC--C----CHHHHHHHHHHcCCCHHHHH
Confidence 33378999999999998888665321 1 12336678899999987554
No 53
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=1.8e-08 Score=105.77 Aligned_cols=205 Identities=18% Similarity=0.128 Sum_probs=131.7
Q ss_pred cCccccccccccccc--ccccccc----CCCCcCcCccccccccc----ccchhhccCCCCCCeEEeeecCccccccccc
Q 036584 683 LPIEINMMQELRHLI--GNFKGTL----PIENLTNLQTLKYVQSK----SWNKVNTAKLVNLRDLHIEEDEDEWEGETVF 752 (919)
Q Consensus 683 lp~~i~~L~~L~~L~--~~~~~~~----~i~~l~~L~~L~~~~~~----~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~ 752 (919)
+...=.++++|+... ++..... ....+++++.|+++.+- .........|++|+.|.++.+.........
T Consensus 113 i~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~- 191 (505)
T KOG3207|consen 113 IAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN- 191 (505)
T ss_pred HHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc-
Confidence 333345677777763 3222211 25678888888887765 233445677889999999887643222211
Q ss_pred hhhHHhhcCCCcEEEEeecCCCCccCcCCCCCCCCceeEEEceecC----CCCcchhccCCCcceEEEEccCCCC-CCch
Q 036584 753 SFESIAKLKNLRFLSVKLLDANSFASLQPLSHCQCLVDLRLSGRMK----KLPEDMHVFLPNLECLSLSVPYPKE-DPMP 827 (919)
Q Consensus 753 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~----~~p~~~~~l~~~L~~L~L~~~~l~~-~~~~ 827 (919)
.-..+++|+.|.|..|+.+.-+..-.+..+|+|+.|++.+|.. ..+..+ +..|+.|+|++|.+-. ....
T Consensus 192 ---~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i---~~~L~~LdLs~N~li~~~~~~ 265 (505)
T KOG3207|consen 192 ---TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKI---LQTLQELDLSNNNLIDFDQGY 265 (505)
T ss_pred ---chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhh---hhHHhhccccCCccccccccc
Confidence 1125678889999877654322222255689999999988732 222222 4789999999987643 2346
Q ss_pred hhhcCCCCCeEEEeeccccCeeEE-----EcCCCCcccceeEEecCCcccEEEc--cCCcccccceEEccccCccC
Q 036584 828 ALEMLPNLIILDLHFRCHYVKKLG-----CRAEGFPLLEILQLDADGLVEWQVE--EGAMPVLRGLKIAAEIPKLK 896 (919)
Q Consensus 828 ~l~~lp~L~~L~L~~~~~~~~~~~-----~~~~~f~~L~~L~l~~~~l~~~~~~--~~~~p~L~~L~l~~nC~~l~ 896 (919)
..+.||.|..|+++.+.......+ .....||+|++|++..|++.+|+.- ...+++|+.|.+.. +.+.
T Consensus 266 ~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~--n~ln 339 (505)
T KOG3207|consen 266 KVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL--NYLN 339 (505)
T ss_pred ccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccc--cccc
Confidence 678899999999985544322221 1235799999999998888888642 34678888888763 5444
No 54
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.46 E-value=2.3e-07 Score=92.48 Aligned_cols=50 Identities=26% Similarity=0.276 Sum_probs=33.6
Q ss_pred CccccccCHHHHHHHHhc-CCCCcEEEEEEecCCchHHHHHHHHHcccCcc
Q 036584 204 NPVGFEDDTDLLLAKLLD-KEQRRLVISIYGMGGLGKTTLARKLYHNNDVK 253 (919)
Q Consensus 204 ~~vGr~~~~~~l~~~L~~-~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~ 253 (919)
.||||+++++++...|.. .....+.+.|+|++|+|||+|+++++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 489999999999999942 23456899999999999999999998853333
No 55
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.44 E-value=1.6e-07 Score=90.41 Aligned_cols=73 Identities=27% Similarity=0.428 Sum_probs=16.7
Q ss_pred ceEEEEEeccCccccccccccchhhhhhhc-ccccceEEeecCCCccccChhhhcCCCCcEEecCCCCCcccccCcccc-
Q 036584 611 FLLRVFDVEADLDRESTLMHWSNRLSEKIG-DLIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVELPIEIN- 688 (919)
Q Consensus 611 ~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~-~L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~~i~- 688 (919)
..+|.|+|++ +. |+ .+ +.++ .+.+|+.|+|++|.|+.++ .+..|++|++|++++| .+..++..+.
T Consensus 19 ~~~~~L~L~~-n~-----I~---~I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N--~I~~i~~~l~~ 85 (175)
T PF14580_consen 19 VKLRELNLRG-NQ-----IS---TI-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN--RISSISEGLDK 85 (175)
T ss_dssp ---------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS-----S-CHHHHH
T ss_pred cccccccccc-cc-----cc---cc-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC--CCCccccchHH
Confidence 3456666666 55 54 33 3444 3556666666666666664 4556666666666666 5555544332
Q ss_pred cccccccc
Q 036584 689 MMQELRHL 696 (919)
Q Consensus 689 ~L~~L~~L 696 (919)
.+++|++|
T Consensus 86 ~lp~L~~L 93 (175)
T PF14580_consen 86 NLPNLQEL 93 (175)
T ss_dssp H-TT--EE
T ss_pred hCCcCCEE
Confidence 34444444
No 56
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=3.8e-06 Score=98.56 Aligned_cols=197 Identities=15% Similarity=0.112 Sum_probs=112.8
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFN 282 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 282 (919)
.++||.+..++.|.+++..+. -...+.++|+.|+||||+|+.+++...-...... ..+..-.....+.....
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~-------~pCg~C~sC~~i~~g~~ 87 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTA-------TPCGVCSSCVEIAQGRF 87 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCC-------CCCCCchHHHHHhcCCC
Confidence 578999999999998887653 2345689999999999999999974211111000 00000011111111000
Q ss_pred cccc-ccccccCCHHH---HHHHHHH-HhccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecc-hhhhhhcC
Q 036584 283 IMTA-LEDLETKTEED---LARSLRK-SLEAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRI-KDVAERSD 354 (919)
Q Consensus 283 ~~~~-~~~~~~~~~~~---~~~~l~~-~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~~ 354 (919)
.... .........++ +...+.. ...+++-++|||+++.. +.++.++..+-.-....++|++|.+ ..+...+.
T Consensus 88 ~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIl 167 (944)
T PRK14949 88 VDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVL 167 (944)
T ss_pred ceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHH
Confidence 0000 00000011111 2211111 12466779999999854 5677887777655556667665544 33432322
Q ss_pred CCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHH
Q 036584 355 DRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVL 409 (919)
Q Consensus 355 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~ 409 (919)
.....|.+.+++.++..+.+.+.+-... ..-..+.+..|++.++|.|--+..+
T Consensus 168 SRCq~f~fkpLs~eEI~~~L~~il~~Eg--I~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 168 SRCLQFNLKSLTQDEIGTQLNHILTQEQ--LPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred HhheEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3337899999999999999987664322 1223456788999999998644433
No 57
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.42 E-value=3.5e-06 Score=82.92 Aligned_cols=179 Identities=23% Similarity=0.203 Sum_probs=98.5
Q ss_pred CCCCccccccCHHHHHHHHhc---CCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHH
Q 036584 201 VEENPVGFEDDTDLLLAKLLD---KEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRI 277 (919)
Q Consensus 201 ~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 277 (919)
.-++|||.++-++.+.-++.. .++...-+.+||++|+||||||.-+++ ....+|. +.+... ..
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~~-i~-------- 87 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGPA-IE-------- 87 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEECCC-----------
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCeE---eccchh-hh--------
Confidence 346899998888876555543 234577899999999999999999999 4444442 233211 00
Q ss_pred HHHhcccccccccccCCHHHHHHHHHHHhccCceEEEEecccchh--HHHHHHhhCCC--------CCCC----------
Q 036584 278 IKSFNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHKE--DWVSLKSAFPE--------NKIG---------- 337 (919)
Q Consensus 278 l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~--------~~~g---------- 337 (919)
...++...+. .+ +++-+|++|+++... .-+.+..++-+ .+++
T Consensus 88 ----------------k~~dl~~il~-~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 88 ----------------KAGDLAAILT-NL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp ----------------SCHHHHHHHH-T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred ----------------hHHHHHHHHH-hc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 0112222221 12 235588889997542 22333333221 1111
Q ss_pred -cEEEEEecchhhhhhcCCCC-ceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHHHHHh
Q 036584 338 -SRVIITTRIKDVAERSDDRN-YVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVLGGLL 413 (919)
Q Consensus 338 -s~iivTtr~~~v~~~~~~~~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~~~~l 413 (919)
+-|=.|||...+.......- ....++..+.+|-..+..+.+..-. .+-..+.+.+|+.++.|-|--+.-+-...
T Consensus 150 FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~--i~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN--IEIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp -EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred ceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 22335788766655544432 4568999999999999988765433 23345788999999999997655544443
No 58
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.42 E-value=1.9e-06 Score=82.08 Aligned_cols=123 Identities=20% Similarity=0.087 Sum_probs=71.6
Q ss_pred cccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccc
Q 036584 206 VGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMT 285 (919)
Q Consensus 206 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~ 285 (919)
+|++..++.+...+.... .+.+.|+|++|+||||+++.+++... ..-..++++...+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~--~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~----- 71 (151)
T cd00009 1 VGQEEAIEALREALELPP--PKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF----- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-----
Confidence 367778888888876643 56899999999999999999998532 222346666665433221111110000
Q ss_pred cccccccCCHHHHHHHHHHHhccCceEEEEecccch-----hHHHHHHhhCCCC---CCCcEEEEEecchh
Q 036584 286 ALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHK-----EDWVSLKSAFPEN---KIGSRVIITTRIKD 348 (919)
Q Consensus 286 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----~~~~~l~~~l~~~---~~gs~iivTtr~~~ 348 (919)
............++.+||+||++.. ..+..+...+... ..+..+|+||....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0001111222456789999999853 2233333333221 35778888887554
No 59
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=3.4e-06 Score=96.02 Aligned_cols=192 Identities=17% Similarity=0.134 Sum_probs=114.2
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFN 282 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 282 (919)
++++|-+..++.|..++..+. -...+.++|++|+||||+|+.+++...-.+.+....|.|.+. +.+.....
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc--------~~i~~~~h 84 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC--------LAVRRGAH 84 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh--------HHHhcCCC
Confidence 468998888888888887753 235679999999999999999987532222222223332211 11110000
Q ss_pred cccc-ccccccCCHHHHHHHHHHHh-----ccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEec-chhhhhhc
Q 036584 283 IMTA-LEDLETKTEEDLARSLRKSL-----EAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTR-IKDVAERS 353 (919)
Q Consensus 283 ~~~~-~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr-~~~v~~~~ 353 (919)
.... .........+.+ +.+.+.+ .+++-++|+|+++.. ..++.+...+........+|++|. ...+...+
T Consensus 85 ~dv~el~~~~~~~vd~i-R~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I 163 (504)
T PRK14963 85 PDVLEIDAASNNSVEDV-RDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTI 163 (504)
T ss_pred CceEEecccccCCHHHH-HHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHH
Confidence 0000 000001112222 2233322 345669999999854 457788887766555555555554 34443333
Q ss_pred CCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHH
Q 036584 354 DDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAI 406 (919)
Q Consensus 354 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal 406 (919)
......+.+.+++.++..+.+.+.+...... ...+.+..|++.++|.+--+
T Consensus 164 ~SRc~~~~f~~ls~~el~~~L~~i~~~egi~--i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 164 LSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE--AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred hcceEEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 3334689999999999999998877544322 12456788999999998644
No 60
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=5.8e-06 Score=94.18 Aligned_cols=195 Identities=15% Similarity=0.101 Sum_probs=114.2
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFN 282 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 282 (919)
.++||.+...+.|.+++..+. -...+.++|+.|+||||+|+.+++...-.. |+.. ..+..-...+.+...-.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~~-~pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCET------GVTS-TPCEVCATCKAVNEGRF 86 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCCC-CCCccCHHHHHHhcCCC
Confidence 578999999999999998654 246889999999999999999987421110 1110 11111112222221100
Q ss_pred cccc-ccccccCCHHHHHHHHHH----HhccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecch-hhhhhcC
Q 036584 283 IMTA-LEDLETKTEEDLARSLRK----SLEAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRIK-DVAERSD 354 (919)
Q Consensus 283 ~~~~-~~~~~~~~~~~~~~~l~~----~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~ 354 (919)
...- .........+++.+.+.. ...++.-++|+|+++.. ..++.++..+.....+.++|++|.+. .+.....
T Consensus 87 pDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIl 166 (702)
T PRK14960 87 IDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVI 166 (702)
T ss_pred CceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHH
Confidence 0000 000001122232222211 12356679999999854 46677777776655567787777553 2222222
Q ss_pred CCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHH
Q 036584 355 DRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIV 407 (919)
Q Consensus 355 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~ 407 (919)
.....+++.+++.++..+.+.+.+..... .-..+....|++.++|.+..+.
T Consensus 167 SRCq~feFkpLs~eEI~k~L~~Il~kEgI--~id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 167 SRCLQFTLRPLAVDEITKHLGAILEKEQI--AADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HhhheeeccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 23378999999999999998877654332 2224567789999999885543
No 61
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=4.3e-06 Score=94.92 Aligned_cols=202 Identities=16% Similarity=0.105 Sum_probs=114.6
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFN 282 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 282 (919)
.++||-+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+...-... +..--+ .++.+..-...+.|...-.
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p-~~~~g~-~~~PCG~C~sC~~I~aG~h 92 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGA-DGEGGI-TAQPCGQCRACTEIDAGRF 92 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCc-cccccC-CCCCCcccHHHHHHHcCCC
Confidence 478999999999999987754 2356789999999999999999874211000 000000 0001111112222211100
Q ss_pred ccc-cccccccCCHHHHHHHHHHH----hccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEec-chhhhhhcC
Q 036584 283 IMT-ALEDLETKTEEDLARSLRKS----LEAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTR-IKDVAERSD 354 (919)
Q Consensus 283 ~~~-~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr-~~~v~~~~~ 354 (919)
... ..........+++.+.+... ..++.-++|||+++.. ..++.++..+-.-..++++|++|. ...+...+.
T Consensus 93 pDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIr 172 (700)
T PRK12323 93 VDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVL 172 (700)
T ss_pred CcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHH
Confidence 000 00000011233333322221 1455679999999854 567788877765555666665554 444443333
Q ss_pred CCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHH
Q 036584 355 DRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVL 409 (919)
Q Consensus 355 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~ 409 (919)
.....+.+..++.++..+.+.+.+...... ...+..+.|++.++|.|.-...+
T Consensus 173 SRCq~f~f~~ls~eei~~~L~~Il~~Egi~--~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 173 SRCLQFNLKQMPPGHIVSHLDAILGEEGIA--HEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HHHHhcccCCCChHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 333688999999999999988766433221 22345678999999999654443
No 62
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.36 E-value=6.7e-06 Score=89.86 Aligned_cols=180 Identities=16% Similarity=0.146 Sum_probs=107.3
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEe--CCCCCHHHHHHHHHHH
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSV--SQDYKIKDLLLRIIKS 280 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~il~~ 280 (919)
.+++|+++.++.+..++..+. .+.+.|+|++|+||||+|+.+++.. ....+. ..++.+ +..... ....+.+.+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~-~~~i~~~~~~~~~~-~~~~~~i~~ 91 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALAREL-YGEDWR-ENFLELNASDERGI-DVIRNKIKE 91 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHH-cCCccc-cceEEeccccccch-HHHHHHHHH
Confidence 458899999999999987654 4457999999999999999998842 122221 122222 221111 111111111
Q ss_pred hcccccccccccCCHHHHHHHHHHHhccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecch-hhhhhcCCCC
Q 036584 281 FNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRIK-DVAERSDDRN 357 (919)
Q Consensus 281 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~ 357 (919)
+....+ .....+-++++|+++.. +....+...+......+.+|+++... .+........
T Consensus 92 ~~~~~~------------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 92 FARTAP------------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HHhcCC------------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 111000 00123568999998754 34556666665544556777766432 2221111122
Q ss_pred ceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHH
Q 036584 358 YVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIV 407 (919)
Q Consensus 358 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~ 407 (919)
..+++++++.++....+.+.+...... -..+.+..+++.++|.+--+.
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~~--i~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGIE--ITDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 578999999999999988877543322 224567788999999886643
No 63
>PF14516 AAA_35: AAA-like domain
Probab=98.36 E-value=6.1e-05 Score=81.85 Aligned_cols=205 Identities=15% Similarity=0.152 Sum_probs=120.7
Q ss_pred CCCCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCC-----CCHHHHHH
Q 036584 201 VEENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQD-----YKIKDLLL 275 (919)
Q Consensus 201 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~ 275 (919)
+.+..|.|...-+++.+.+... ...+.|.|+-.+|||+|..++.+..+. ..|. ++++++... .+....++
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~l~~-~~~~-~v~id~~~~~~~~~~~~~~f~~ 83 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLERLQQ-QGYR-CVYIDLQQLGSAIFSDLEQFLR 83 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHHHHH-CCCE-EEEEEeecCCCcccCCHHHHHH
Confidence 3455678885666777777663 248999999999999999999874332 2444 557776542 24555555
Q ss_pred HHHHHhccccccc----c-c--ccCCHHHHHHHHHHHh---ccCceEEEEecccchh-------HH-HHHHhhCCCCC--
Q 036584 276 RIIKSFNIMTALE----D-L--ETKTEEDLARSLRKSL---EAYSYLMVIDDIWHKE-------DW-VSLKSAFPENK-- 335 (919)
Q Consensus 276 ~il~~l~~~~~~~----~-~--~~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~~-------~~-~~l~~~l~~~~-- 335 (919)
.+...+...-..+ + + ...........+.+.+ .+++.+|+||+++..- ++ ..+........
T Consensus 84 ~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~ 163 (331)
T PF14516_consen 84 WFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNN 163 (331)
T ss_pred HHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccC
Confidence 5555554422111 0 0 1112234444555543 2689999999997431 22 22222211111
Q ss_pred --CCc-EEEEEecc-hhhhhhcCC----CCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHH
Q 036584 336 --IGS-RVIITTRI-KDVAERSDD----RNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIV 407 (919)
Q Consensus 336 --~gs-~iivTtr~-~~v~~~~~~----~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~ 407 (919)
... ++++.... ......... ....+.|++++.+|...|+.++-..- . ....++|...+||+|.-+.
T Consensus 164 ~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~---~---~~~~~~l~~~tgGhP~Lv~ 237 (331)
T PF14516_consen 164 PIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF---S---QEQLEQLMDWTGGHPYLVQ 237 (331)
T ss_pred cccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC---C---HHHHHHHHHHHCCCHHHHH
Confidence 111 22222211 111111111 11578999999999999998764321 1 1228889999999999999
Q ss_pred HHHHHhcCC
Q 036584 408 VLGGLLSTK 416 (919)
Q Consensus 408 ~~~~~l~~~ 416 (919)
.++..+...
T Consensus 238 ~~~~~l~~~ 246 (331)
T PF14516_consen 238 KACYLLVEE 246 (331)
T ss_pred HHHHHHHHc
Confidence 999999765
No 64
>PLN03025 replication factor C subunit; Provisional
Probab=98.35 E-value=5.5e-06 Score=89.92 Aligned_cols=182 Identities=16% Similarity=0.125 Sum_probs=104.7
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCC-EEEEEEeCCCCCHHHHHHHHHHHh
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFD-YCAWVSVSQDYKIKDLLLRIIKSF 281 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~il~~l 281 (919)
.+++|.++.++.+..++..+. .+.+.++|++|+||||+|+.+++.. ....|. .++-++.+..... +.+++++..+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~-~~vr~~i~~~ 88 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGN--MPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGI-DVVRNKIKMF 88 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccH-HHHHHHHHHH
Confidence 467888888888877776543 4457899999999999999999842 122232 1222222222111 1222222221
Q ss_pred cccccccccccCCHHHHHHHHHHHhccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecch-hhhhhcCCCCc
Q 036584 282 NIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRIK-DVAERSDDRNY 358 (919)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~~ 358 (919)
..... ..-.++.-+++||+++.. .....+...+......+++|+++... .+.........
T Consensus 89 ~~~~~-----------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 89 AQKKV-----------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred Hhccc-----------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 11000 000234669999999855 33445555444334456777766432 22221112225
Q ss_pred eEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHH
Q 036584 359 VHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIV 407 (919)
Q Consensus 359 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~ 407 (919)
.+++++++.++....+.+.+-..... -..+....|++.++|..-.+.
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi~--i~~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKVP--YVPEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 78999999999999988876543322 123567788999998875443
No 65
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.4e-08 Score=101.26 Aligned_cols=138 Identities=21% Similarity=0.157 Sum_probs=85.8
Q ss_pred hhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCcCC-CCCCCCceeEEEceecCCCCc-
Q 036584 725 KVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASLQP-LSHCQCLVDLRLSGRMKKLPE- 802 (919)
Q Consensus 725 ~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~L~~~~~~~p~- 802 (919)
...+.+-.+|+.|+++.+..- ..... . --+.+++.|.+|+|+||....-..-.. -+--++|..|+|+|+...+-.
T Consensus 227 ~~~iAkN~~L~~lnlsm~sG~-t~n~~-~-ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~s 303 (419)
T KOG2120|consen 227 VNTIAKNSNLVRLNLSMCSGF-TENAL-Q-LLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKS 303 (419)
T ss_pred HHHHhccccceeecccccccc-chhHH-H-HHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhh
Confidence 344555667777777776522 22222 1 346778888899998885432111111 222478899999997643221
Q ss_pred chhcc---CCCcceEEEEcc-CCCCCCchhhhcCCCCCeEEEeecccc-CeeEEEcCCCCcccceeEEe
Q 036584 803 DMHVF---LPNLECLSLSVP-YPKEDPMPALEMLPNLIILDLHFRCHY-VKKLGCRAEGFPLLEILQLD 866 (919)
Q Consensus 803 ~~~~l---~~~L~~L~L~~~-~l~~~~~~~l~~lp~L~~L~L~~~~~~-~~~~~~~~~~f~~L~~L~l~ 866 (919)
.+..+ +|+|..|+|++| .++......+..++.|++|.++ .||. ..+.....+..|+|.+|++.
T Consensus 304 h~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls-RCY~i~p~~~~~l~s~psl~yLdv~ 371 (419)
T KOG2120|consen 304 HLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS-RCYDIIPETLLELNSKPSLVYLDVF 371 (419)
T ss_pred HHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh-hhcCCChHHeeeeccCcceEEEEec
Confidence 22222 699999999887 4555555667789999999998 4443 33333445677888888887
No 66
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.35 E-value=1.1e-07 Score=97.47 Aligned_cols=138 Identities=22% Similarity=0.203 Sum_probs=64.1
Q ss_pred CCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccC---cCCCCCCCCceeEEEceec-C-----CCC
Q 036584 731 LVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFAS---LQPLSHCQCLVDLRLSGRM-K-----KLP 801 (919)
Q Consensus 731 l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~l~~~~~L~~L~L~~~~-~-----~~p 801 (919)
-++|+.+....|.....+... ....+...+.|+.+.+...+...-.. ...+..+++|+.|+|..|. + .+.
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~-~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATA-LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CcceEEEEeeccccccccHHH-HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 345555555555422111111 11445555666666654322111100 1124556666666666653 1 112
Q ss_pred cchhccCCCcceEEEEccCCCCCCchhhh-----cCCCCCeEEEeeccccCee---EEEcCCCCcccceeEEecCCc
Q 036584 802 EDMHVFLPNLECLSLSVPYPKEDPMPALE-----MLPNLIILDLHFRCHYVKK---LGCRAEGFPLLEILQLDADGL 870 (919)
Q Consensus 802 ~~~~~l~~~L~~L~L~~~~l~~~~~~~l~-----~lp~L~~L~L~~~~~~~~~---~~~~~~~f~~L~~L~l~~~~l 870 (919)
..+..+ ++|+.|++++|.+.......+. ..|+|+.|.|.+|.+.... +.......|.|+.|+|+.|.+
T Consensus 235 kaL~s~-~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 235 KALSSW-PHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhccc-chheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 222233 5667777777766544332221 3566777776655433221 111123356666666665554
No 67
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.34 E-value=1e-07 Score=95.03 Aligned_cols=106 Identities=20% Similarity=0.232 Sum_probs=65.6
Q ss_pred CCcccEEEEeccccccc---ccccccchhhhccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCcc
Q 036584 580 NSLARSLLLFNQWWDET---LGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIG 656 (919)
Q Consensus 580 ~~~lrsL~~~~~~~~~~---~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~ 656 (919)
+.++..|.+.+.. +++ +.+...+|..++-|++|..+.++. |. -+ .+-.-...-+.|+++..+++.++
T Consensus 181 ~~~l~~l~vs~~~-~p~~~sni~~~~l~f~l~~f~~l~~~~~s~-~~-----~~---~i~~~~~~kptl~t~~v~~s~~~ 250 (490)
T KOG1259|consen 181 CTQLVALVVTPVK-DPIDRSNIIPNRLSFNLNAFRNLKTLKFSA-LS-----TE---NIVDIELLKPTLQTICVHNTTIQ 250 (490)
T ss_pred hhheeEEEecCCC-CCCccccccccccccchHHhhhhheeeeec-cc-----hh---heeceeecCchhheeeeeccccc
Confidence 5677777777652 221 233345565667788888888888 66 33 22222233467888888887664
Q ss_pred cc----Chh--------------------hhcCCCCcEEecCCCCCcccccCccccccccccccc
Q 036584 657 IL----PSS--------------------IVKLQRLQTLDFSGDVGCPVELPIEINMMQELRHLI 697 (919)
Q Consensus 657 ~L----P~~--------------------l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~L~~L~ 697 (919)
.. |.. +...+.|++|||++| .+..+-.++.-+++++.|.
T Consensus 251 ~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N--~I~~iDESvKL~Pkir~L~ 313 (490)
T KOG1259|consen 251 DVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGN--LITQIDESVKLAPKLRRLI 313 (490)
T ss_pred ccccccchhhhcCccCCCCCccCCceEEecchHhhhhhcccccc--chhhhhhhhhhccceeEEe
Confidence 32 221 112356788888888 7777777766666666663
No 68
>PRK08727 hypothetical protein; Validated
Probab=98.34 E-value=5.7e-06 Score=85.14 Aligned_cols=148 Identities=20% Similarity=0.121 Sum_probs=89.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKS 305 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 305 (919)
...+.|+|.+|+|||.|++.+++. ...+...+.|+++.+ ....+. . ..+.
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~------------------~----~~~~ 90 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLR------------------D----ALEA 90 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHH------------------H----HHHH
Confidence 356999999999999999999884 333333566776432 111100 0 1111
Q ss_pred hccCceEEEEecccch---hHHHHHHhhCC-C-CCCCcEEEEEecch---------hhhhhcCCCCceEecCCCChHhHH
Q 036584 306 LEAYSYLMVIDDIWHK---EDWVSLKSAFP-E-NKIGSRVIITTRIK---------DVAERSDDRNYVHELRFLRQDESW 371 (919)
Q Consensus 306 l~~~~~LlVlDdv~~~---~~~~~l~~~l~-~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~~l~~L~~~~~~ 371 (919)
+. +.-+|||||+... ..|....-.+. . ...|..||+|++.. ++....... ..+++++++.++-.
T Consensus 91 l~-~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~-~~~~l~~~~~e~~~ 168 (233)
T PRK08727 91 LE-GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQC-IRIGLPVLDDVARA 168 (233)
T ss_pred Hh-cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcC-ceEEecCCCHHHHH
Confidence 21 2358999999743 23432222222 1 12356799998743 222222222 58899999999999
Q ss_pred HHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHH
Q 036584 372 QLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIV 407 (919)
Q Consensus 372 ~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~ 407 (919)
+++++++..... .--.+....|++.++|..-.+.
T Consensus 169 ~iL~~~a~~~~l--~l~~e~~~~La~~~~rd~r~~l 202 (233)
T PRK08727 169 AVLRERAQRRGL--ALDEAAIDWLLTHGERELAGLV 202 (233)
T ss_pred HHHHHHHHHcCC--CCCHHHHHHHHHhCCCCHHHHH
Confidence 999987754322 2234566778888887766553
No 69
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=1.1e-05 Score=91.91 Aligned_cols=182 Identities=15% Similarity=0.142 Sum_probs=110.8
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccC-------------------CCCEEEEEE
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKN-------------------KFDYCAWVS 263 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~wv~ 263 (919)
.+++|-+..++.+...+..+. -...+.++|+.|+||||+|+.+++...-.. .|.-.+++.
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieid 94 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEID 94 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEee
Confidence 468999999999998887653 235678999999999999999987311100 111122222
Q ss_pred eCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHH-hccCceEEEEecccch--hHHHHHHhhCCCCCCCcEE
Q 036584 264 VSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKS-LEAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRV 340 (919)
Q Consensus 264 ~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~i 340 (919)
.......+ +..++...+... ..+++-++|+|+++.. ..++.++..+-.....+.+
T Consensus 95 aas~~gvd----------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 95 AASRTGVE----------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred cccccCHH----------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 11111110 111222222211 2456679999999754 4577888777765556666
Q ss_pred EEEec-chhhhhhcCCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcch-HHHHH
Q 036584 341 IITTR-IKDVAERSDDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPL-AIVVL 409 (919)
Q Consensus 341 ivTtr-~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PL-al~~~ 409 (919)
|++|. ...+...+......+++.+++.++....+.+.+..... ....+....|++.++|.+- |+..+
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi--~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI--NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 65544 33333223333378999999999988888775543221 2234556789999999774 44444
No 70
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.34 E-value=7.1e-06 Score=97.01 Aligned_cols=171 Identities=19% Similarity=0.216 Sum_probs=98.4
Q ss_pred CCccccccCHH---HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 036584 203 ENPVGFEDDTD---LLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIK 279 (919)
Q Consensus 203 ~~~vGr~~~~~---~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 279 (919)
++++|.+..+. .+.+.+..+ +...+.|+|++|+||||||+.+++. ...+|. .++.... .. .+
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~~-~i----~d--- 92 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD--RVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVLA-GV----KD--- 92 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhhh-hh----HH---
Confidence 46889887764 455555543 3567789999999999999999983 444441 1111100 00 00
Q ss_pred HhcccccccccccCCHHHHHHHHHHHh--ccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEE--ecchh--hhh
Q 036584 280 SFNIMTALEDLETKTEEDLARSLRKSL--EAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIIT--TRIKD--VAE 351 (919)
Q Consensus 280 ~l~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivT--tr~~~--v~~ 351 (919)
.........+.+ .+++.+|||||++.. ..++.+...+.. |+.++|+ |.+.. +..
T Consensus 93 ---------------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~---g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 93 ---------------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVEN---GTITLIGATTENPYFEVNK 154 (725)
T ss_pred ---------------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcC---ceEEEEEecCCChHhhhhh
Confidence 111112222222 245779999999743 455666654442 4555553 33321 222
Q ss_pred hcCCCCceEecCCCChHhHHHHHHHHhccC-----CCCchhhHHHHHHHHHHcCCcchHH
Q 036584 352 RSDDRNYVHELRFLRQDESWQLFCERAFRN-----SKAEKGLENLGREMVQKCDGLPLAI 406 (919)
Q Consensus 352 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~-----~~~~~~~~~~~~~I~~~~~G~PLal 406 (919)
........+.+++++.++...++.+.+... .....-..+....|++.+.|..-.+
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSL 214 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHH
Confidence 222223578999999999999998766410 1112223456677888888875443
No 71
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.33 E-value=3.6e-07 Score=88.04 Aligned_cols=85 Identities=25% Similarity=0.230 Sum_probs=30.3
Q ss_pred CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccC
Q 036584 580 NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILP 659 (919)
Q Consensus 580 ~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP 659 (919)
..++|.|.+.++. .. .+...-..+.+|++|||++ |. +. .++ .+..|++|++|++++|.|+.++
T Consensus 18 ~~~~~~L~L~~n~-----I~--~Ie~L~~~l~~L~~L~Ls~-N~-----I~---~l~-~l~~L~~L~~L~L~~N~I~~i~ 80 (175)
T PF14580_consen 18 PVKLRELNLRGNQ-----IS--TIENLGATLDKLEVLDLSN-NQ-----IT---KLE-GLPGLPRLKTLDLSNNRISSIS 80 (175)
T ss_dssp -------------------------S--TT-TT--EEE-TT-S-------S-----T-T----TT--EEE--SS---S-C
T ss_pred ccccccccccccc-----cc--cccchhhhhcCCCEEECCC-CC-----Cc---ccc-CccChhhhhhcccCCCCCCccc
Confidence 4467778887772 11 1222113577899999999 88 77 664 6888999999999999999997
Q ss_pred hhh-hcCCCCcEEecCCCCCccccc
Q 036584 660 SSI-VKLQRLQTLDFSGDVGCPVEL 683 (919)
Q Consensus 660 ~~l-~~L~~L~~L~L~~~~~~~~~l 683 (919)
..+ ..+++|++|++++| .+..+
T Consensus 81 ~~l~~~lp~L~~L~L~~N--~I~~l 103 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNN--KISDL 103 (175)
T ss_dssp HHHHHH-TT--EEE-TTS-----SC
T ss_pred cchHHhCCcCCEEECcCC--cCCCh
Confidence 766 46999999999999 55543
No 72
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=1.6e-05 Score=89.84 Aligned_cols=200 Identities=18% Similarity=0.161 Sum_probs=109.6
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFN 282 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 282 (919)
+++||.+.....+...+..+. -...+.++|++|+||||+|+.+++....... .. ..++..-.....+...-.
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~------~~-~~pc~~c~~c~~i~~g~~ 85 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENR------KG-VEPCNECRACRSIDEGTF 85 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccC------CC-CCCCcccHHHHHHhcCCC
Confidence 468998888788877776653 2356899999999999999999874211110 00 000000011111110000
Q ss_pred ccc-cccccccCCHHHHHHHHHHH-----hccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecc-hhhhhhc
Q 036584 283 IMT-ALEDLETKTEEDLARSLRKS-----LEAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRI-KDVAERS 353 (919)
Q Consensus 283 ~~~-~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~ 353 (919)
... ..........+++ +.+.+. ..+++-++|+|+++.. +..+.+...+........+|++|.+ ..+....
T Consensus 86 ~dv~el~aa~~~gid~i-R~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L 164 (472)
T PRK14962 86 MDVIELDAASNRGIDEI-RKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTI 164 (472)
T ss_pred CccEEEeCcccCCHHHH-HHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHH
Confidence 000 0000000111222 122222 2345679999999754 3456677666554444555544443 4444444
Q ss_pred CCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCc-chHHHHHHHHh
Q 036584 354 DDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGL-PLAIVVLGGLL 413 (919)
Q Consensus 354 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~-PLal~~~~~~l 413 (919)
......+.+.+++.++....+.+.+...... -..+....|++.++|. +.|+..+-.+.
T Consensus 165 ~SR~~vv~f~~l~~~el~~~L~~i~~~egi~--i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 165 ISRCQVIEFRNISDELIIKRLQEVAEAEGIE--IDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred hcCcEEEEECCccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4444789999999999999988877543221 2245677788877654 56666665533
No 73
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.32 E-value=1.9e-05 Score=87.67 Aligned_cols=182 Identities=13% Similarity=0.114 Sum_probs=112.0
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCcc--------------------CCCCEEEEE
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVK--------------------NKFDYCAWV 262 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~--------------------~~f~~~~wv 262 (919)
.+++|.++.++.+.+++..+. -...+.++|++|+||||+|+.+.....-. .+++. +++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~ 91 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEI 91 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEe
Confidence 468999999999999887653 34578899999999999999988642111 02221 222
Q ss_pred EeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHH-HhccCceEEEEecccch--hHHHHHHhhCCCCCCCcE
Q 036584 263 SVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRK-SLEAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSR 339 (919)
Q Consensus 263 ~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ 339 (919)
..+..... ..+++ +...+.. ...+++-++|+|+++.. ..++.+...+......+.
T Consensus 92 ~~~~~~~~-~~~~~---------------------l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 92 DAASNNGV-DDIRE---------------------ILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred eccccCCH-HHHHH---------------------HHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 22111110 01111 1111111 11344568999998654 457777777765555677
Q ss_pred EEEEecchh-hhhhcCCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHHH
Q 036584 340 VIITTRIKD-VAERSDDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVLG 410 (919)
Q Consensus 340 iivTtr~~~-v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~~ 410 (919)
+|++|.+.. +..........+++.+++.++..+++...+-..... -..+.+..|++.++|.|..+....
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~--i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK--IEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCChHHHHHHH
Confidence 777765443 222222223678899999999999988776443322 123677889999999997665443
No 74
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=4.6e-06 Score=92.41 Aligned_cols=194 Identities=14% Similarity=0.073 Sum_probs=111.4
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFN 282 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 282 (919)
.++||.+..+..|..++..+. -...+.++|+.|+||||+|+.+++...- .+... ...+... .....+.....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnc-e~~~~--~~pCg~C----~sC~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNC-ENPIG--NEPCNEC----TSCLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCc-ccccC--ccccCCC----cHHHHHHccCC
Confidence 468999888888888887754 2346899999999999999999974211 11100 0000000 01222222111
Q ss_pred cccc-ccccccCCHHH---HHHHHHHH-hccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEe-cchhhhhhcC
Q 036584 283 IMTA-LEDLETKTEED---LARSLRKS-LEAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITT-RIKDVAERSD 354 (919)
Q Consensus 283 ~~~~-~~~~~~~~~~~---~~~~l~~~-l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~~~~ 354 (919)
.... .........++ +.+.+... ..++.-++|+|+++.. +.++.++..+-.......+|++| ....+...+.
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH
Confidence 1000 00000111222 22222211 2455679999999854 56788877775544455555444 4444443333
Q ss_pred CCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHH
Q 036584 355 DRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAI 406 (919)
Q Consensus 355 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal 406 (919)
.....|.+.+++.++..+.+.+.+..... .-..+....|++.++|.+.-+
T Consensus 170 SRCq~~~f~~ls~~~i~~~L~~i~~~Egi--~~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 170 SRCQDFIFKKVPLSVLQDYSEKLCKIENV--QYDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred hhhheeeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCChHHHH
Confidence 33367999999999999988877644322 122456788999999998543
No 75
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.31 E-value=1.9e-05 Score=89.53 Aligned_cols=197 Identities=16% Similarity=0.125 Sum_probs=113.7
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCE-EEEEEeCCCCCHHHHHHHHHHHh
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDY-CAWVSVSQDYKIKDLLLRIIKSF 281 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~il~~l 281 (919)
.+++|-+..+..+...+..+. -...+.++|+.|+||||+|+.+++...-...... ..+. .+..-.....+....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~----~C~~C~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIK----TCEQCTNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcC----CCCCChHHHHHhcCC
Confidence 467898888888877776643 2457889999999999999999874211111000 0000 000111111211110
Q ss_pred ccccc-ccccccCCHHHHHHHHHHH----hccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEE-Eecchhhhhhc
Q 036584 282 NIMTA-LEDLETKTEEDLARSLRKS----LEAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVII-TTRIKDVAERS 353 (919)
Q Consensus 282 ~~~~~-~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv-Ttr~~~v~~~~ 353 (919)
..... .........+++...+... +.+++-++|+|+++.. ..|+.+...+......+.+|+ ||+...+....
T Consensus 96 h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI 175 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATI 175 (507)
T ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHH
Confidence 00000 0000111223333222221 2456779999999864 568888888776555666665 44544554433
Q ss_pred CCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHH
Q 036584 354 DDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAI 406 (919)
Q Consensus 354 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal 406 (919)
......+++.+++.++....+.+.+...... -..+....|++.++|.+--+
T Consensus 176 ~SRc~~~ef~~ls~~el~~~L~~i~~~egi~--ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 176 ISRCQRYDLRRLSFEEIFKLLEYITKQENLK--TDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HhcceEEEccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 3333679999999999999998887544322 12345677999999987544
No 76
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=1.2e-05 Score=87.97 Aligned_cols=200 Identities=14% Similarity=0.032 Sum_probs=114.7
Q ss_pred CCCCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEE----EEeCCCCCHHHHHHH
Q 036584 201 VEENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAW----VSVSQDYKIKDLLLR 276 (919)
Q Consensus 201 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~w----v~~~~~~~~~~~~~~ 276 (919)
.-.+++|.++.++.+.+.+..+. -...+.++|+.|+||+|+|..+++..--......... .+.. ....-...+.
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~-~~~~c~~c~~ 94 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA-IDPDHPVARR 94 (365)
T ss_pred chhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc-CCCCChHHHH
Confidence 34578999999999999888763 2347889999999999999888864111110000000 0000 0000112222
Q ss_pred HHHHhccccc--cc---cc-----ccCCHHHHHHHHHHHh-----ccCceEEEEecccch--hHHHHHHhhCCCCCCCcE
Q 036584 277 IIKSFNIMTA--LE---DL-----ETKTEEDLARSLRKSL-----EAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSR 339 (919)
Q Consensus 277 il~~l~~~~~--~~---~~-----~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ 339 (919)
+...-..... .+ +. .....++ ++.+.+.+ .+.+-++|+||++.. .....++..+..-..++.
T Consensus 95 i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~ 173 (365)
T PRK07471 95 IAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSL 173 (365)
T ss_pred HHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeE
Confidence 2211110000 00 00 1112333 34444444 355679999999754 456677776665545666
Q ss_pred EEEEecch-hhhhhcCCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHH
Q 036584 340 VIITTRIK-DVAERSDDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVL 409 (919)
Q Consensus 340 iivTtr~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~ 409 (919)
+|++|.+. .+...+......+.+.+++.++..+++.+..... . .+....++..++|.|+.+..+
T Consensus 174 ~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~---~---~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 174 FLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL---P---DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC---C---HHHHHHHHHHcCCCHHHHHHH
Confidence 77776655 3333333444789999999999999998764211 1 122267899999999866554
No 77
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.30 E-value=9.4e-06 Score=83.54 Aligned_cols=174 Identities=20% Similarity=0.183 Sum_probs=104.9
Q ss_pred CccccccCHH---HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 036584 204 NPVGFEDDTD---LLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKS 280 (919)
Q Consensus 204 ~~vGr~~~~~---~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 280 (919)
++||.+..+- .|.+++.++ +...+.+||++|+||||||+.+.+...-.. ..||..|....-..-+++|.++
T Consensus 139 dyvGQ~hlv~q~gllrs~ieq~--~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 139 DYVGQSHLVGQDGLLRSLIEQN--RIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred HhcchhhhcCcchHHHHHHHcC--CCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHH
Confidence 4556544332 233334333 478899999999999999999998533222 5677776543333334444433
Q ss_pred hcccccccccccCCHHHHHHHHHHHhccCceEEEEecccchh--HHHHHHhhCCCCCCCcEEEE--Eecchhhhhh--cC
Q 036584 281 FNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHKE--DWVSLKSAFPENKIGSRVII--TTRIKDVAER--SD 354 (919)
Q Consensus 281 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiv--Ttr~~~v~~~--~~ 354 (919)
-.. ...+.++|.+|++|.|+.-. +-+ .++|.-.+|..++| ||.++..--. .-
T Consensus 213 aq~-------------------~~~l~krkTilFiDEiHRFNksQQD---~fLP~VE~G~I~lIGATTENPSFqln~aLl 270 (554)
T KOG2028|consen 213 AQN-------------------EKSLTKRKTILFIDEIHRFNKSQQD---TFLPHVENGDITLIGATTENPSFQLNAALL 270 (554)
T ss_pred HHH-------------------HHhhhcceeEEEeHHhhhhhhhhhh---cccceeccCceEEEecccCCCccchhHHHH
Confidence 211 12346788999999996432 222 24565566776766 6766542211 11
Q ss_pred CCCceEecCCCChHhHHHHHHHHhc---cCCC---C-ch----hhHHHHHHHHHHcCCcchH
Q 036584 355 DRNYVHELRFLRQDESWQLFCERAF---RNSK---A-EK----GLENLGREMVQKCDGLPLA 405 (919)
Q Consensus 355 ~~~~~~~l~~L~~~~~~~lf~~~~~---~~~~---~-~~----~~~~~~~~I~~~~~G~PLa 405 (919)
....++.|++|..++-..++.+.+- .... + +. ....+..-++..|.|-.-+
T Consensus 271 SRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~ 332 (554)
T KOG2028|consen 271 SRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARA 332 (554)
T ss_pred hccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHH
Confidence 2236899999999999999887432 1111 1 11 2344667777888887643
No 78
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.29 E-value=1.1e-05 Score=83.13 Aligned_cols=153 Identities=20% Similarity=0.208 Sum_probs=92.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKS 305 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 305 (919)
...+.|+|++|+|||+|++.+++. ....-..+.++++..... ...++ .+.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~------------------------~~~~~----~~~ 94 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW------------------------FVPEV----LEG 94 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh------------------------hhHHH----HHH
Confidence 458899999999999999999984 222233466776642100 00111 111
Q ss_pred hccCceEEEEecccch---hHHHHHH-hhCCC-CCCC-cEEEEEecch---------hhhhhcCCCCceEecCCCChHhH
Q 036584 306 LEAYSYLMVIDDIWHK---EDWVSLK-SAFPE-NKIG-SRVIITTRIK---------DVAERSDDRNYVHELRFLRQDES 370 (919)
Q Consensus 306 l~~~~~LlVlDdv~~~---~~~~~l~-~~l~~-~~~g-s~iivTtr~~---------~v~~~~~~~~~~~~l~~L~~~~~ 370 (919)
+.. --+|++||+... ..|+... ..+.. ...| .++|+||+.. ++...+... .+++++++++++-
T Consensus 95 ~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g-~~~~l~~~~~~~~ 172 (235)
T PRK08084 95 MEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWG-QIYKLQPLSDEEK 172 (235)
T ss_pred hhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCC-ceeeecCCCHHHH
Confidence 211 248899999653 3454322 22211 1123 4789988754 233333333 6899999999999
Q ss_pred HHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHHHHH
Q 036584 371 WQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVLGGL 412 (919)
Q Consensus 371 ~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~~~~ 412 (919)
.+++++++..... .--+++..-|++.+.|..-++..+-..
T Consensus 173 ~~~l~~~a~~~~~--~l~~~v~~~L~~~~~~d~r~l~~~l~~ 212 (235)
T PRK08084 173 LQALQLRARLRGF--ELPEDVGRFLLKRLDREMRTLFMTLDQ 212 (235)
T ss_pred HHHHHHHHHHcCC--CCCHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 9999886654322 223467777888888877666554443
No 79
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.29 E-value=2.5e-05 Score=77.85 Aligned_cols=90 Identities=16% Similarity=0.108 Sum_probs=63.5
Q ss_pred cCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecch-hhhhhcCCCCceEecCCCChHhHHHHHHHHhccCCCC
Q 036584 308 AYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRIK-DVAERSDDRNYVHELRFLRQDESWQLFCERAFRNSKA 384 (919)
Q Consensus 308 ~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 384 (919)
+.+-++|+||++.. +.++.++..+......+.+|++|++. .+..........+.+.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g--i- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G--I- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C--C-
Confidence 45668999999754 45777888877655566677766543 332222233368999999999999998876 1 1
Q ss_pred chhhHHHHHHHHHHcCCcchH
Q 036584 385 EKGLENLGREMVQKCDGLPLA 405 (919)
Q Consensus 385 ~~~~~~~~~~I~~~~~G~PLa 405 (919)
..+.+..|++.++|.|..
T Consensus 170 ---~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 ---SEEAAELLLALAGGSPGA 187 (188)
T ss_pred ---CHHHHHHHHHHcCCCccc
Confidence 135688999999999863
No 80
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.28 E-value=1.7e-06 Score=88.86 Aligned_cols=94 Identities=13% Similarity=0.031 Sum_probs=61.6
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCC--CCHHHHHHHHHHHhcccccc-cccccC-CHHHHHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQD--YKIKDLLLRIIKSFNIMTAL-EDLETK-TEEDLARS 301 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~~-~~~~~~-~~~~~~~~ 301 (919)
...++|+|++|+|||||++.++++.... +|+.++|+.+... ++..++++.+...+-..... +..... ........
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999964444 8999999997766 78889999883332221110 000000 01122222
Q ss_pred HHHH-hccCceEEEEecccc
Q 036584 302 LRKS-LEAYSYLMVIDDIWH 320 (919)
Q Consensus 302 l~~~-l~~~~~LlVlDdv~~ 320 (919)
.... -.+++.++++|++..
T Consensus 95 a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHCCCCEEEEEECHHH
Confidence 2222 257899999999954
No 81
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.27 E-value=2.2e-05 Score=85.26 Aligned_cols=201 Identities=14% Similarity=0.098 Sum_probs=117.0
Q ss_pred CCCCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccC--CCCEEEEEEeCCCCCHHHHHHHHH
Q 036584 201 VEENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKN--KFDYCAWVSVSQDYKIKDLLLRII 278 (919)
Q Consensus 201 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~--~f~~~~wv~~~~~~~~~~~~~~il 278 (919)
.-..++|-++..+.+...+..+. -...+.|+|+.|+||||+|..+++..--.. .+... .....+......+.+.
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~ 96 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIA 96 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHH
Confidence 44678999999999999887764 234788999999999999999987421110 01111 0111111122334433
Q ss_pred HHhcc-------cccccc---cccCCHHHHHHHHHHHh-----ccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEE
Q 036584 279 KSFNI-------MTALED---LETKTEEDLARSLRKSL-----EAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVI 341 (919)
Q Consensus 279 ~~l~~-------~~~~~~---~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ii 341 (919)
..-.. ...... ......+++ +.+.+++ .+++-++|+|+++.. ...+.++..+.....+..+|
T Consensus 97 ~~~hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fi 175 (351)
T PRK09112 97 QGAHPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFI 175 (351)
T ss_pred cCCCCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEE
Confidence 32110 000000 011223333 3455544 356679999999854 34566666665433345544
Q ss_pred -EEecchhhhhhcCCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHHH
Q 036584 342 -ITTRIKDVAERSDDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVLG 410 (919)
Q Consensus 342 -vTtr~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~~ 410 (919)
+|++...+..........+.+.+++.++..+++.+...... -..+.+..|++.++|.|.....+.
T Consensus 176 Lit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 176 LISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 44444344333333447899999999999999987432111 113456789999999998665443
No 82
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.27 E-value=2.3e-05 Score=86.32 Aligned_cols=191 Identities=14% Similarity=0.024 Sum_probs=108.7
Q ss_pred CCccccccCHHHHHHHHhcCCC--------CcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHH
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQ--------RRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLL 274 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~--------~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 274 (919)
.+++|-+..++.+.+++..+.. -...+.++|++|+|||++|+.+++...-...- ...+..-...
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~--------~~~Cg~C~~C 76 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD--------EPGCGECRAC 76 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC--------CCCCCCCHHH
Confidence 3578988888888888876531 24678899999999999999997631111000 0011111111
Q ss_pred HHHHHHhcccc--cccccccCCHHHHHHHHHHHh-----ccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEec
Q 036584 275 LRIIKSFNIMT--ALEDLETKTEEDLARSLRKSL-----EAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTR 345 (919)
Q Consensus 275 ~~il~~l~~~~--~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr 345 (919)
+.+...-.... ..++......+++. .+.+.+ .+++-++|+|+++.. ...+.++..+.....+..+|++|.
T Consensus 77 ~~~~~~~hpD~~~i~~~~~~i~i~~iR-~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~ 155 (394)
T PRK07940 77 RTVLAGTHPDVRVVAPEGLSIGVDEVR-ELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAP 155 (394)
T ss_pred HHHhcCCCCCEEEeccccccCCHHHHH-HHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEEC
Confidence 11111100000 00000111222222 232322 345568999999854 445667776665555666666665
Q ss_pred ch-hhhhhcCCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHH
Q 036584 346 IK-DVAERSDDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVL 409 (919)
Q Consensus 346 ~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~ 409 (919)
+. .+...+......+.+.+++.++..+.+.+... . + .+.+..++..++|.|.....+
T Consensus 156 ~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~---~-~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 156 SPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG---V-D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred ChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC---C-C---HHHHHHHHHHcCCCHHHHHHH
Confidence 53 44433333347899999999999988875421 1 1 245678999999999765443
No 83
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.27 E-value=5.6e-08 Score=105.29 Aligned_cols=106 Identities=25% Similarity=0.281 Sum_probs=53.7
Q ss_pred hhhhhhcccccceEEeecCCCccccChhhhcCCCCcEEecCCCCCcccccCcccccccccccc--cc--ccccccCCCCc
Q 036584 634 RLSEKIGDLIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVELPIEINMMQELRHL--IG--NFKGTLPIENL 709 (919)
Q Consensus 634 ~lp~~i~~L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~L~~L--~~--~~~~~~~i~~l 709 (919)
++|..++.+..|..|.|..|.|..+|..+++|..|.+|||+.| .+..+|..++.|+ |+.| .| ....|.+++.+
T Consensus 89 elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N--qlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~ 165 (722)
T KOG0532|consen 89 ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN--QLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLL 165 (722)
T ss_pred cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc--hhhcCChhhhcCc-ceeEEEecCccccCCcccccc
Confidence 5555555555555555555555555555555555555555555 5555555555443 2222 11 11233334444
Q ss_pred CcCccccccccc-ccchhhccCCCCCCeEEeeec
Q 036584 710 TNLQTLKYVQSK-SWNKVNTAKLVNLRDLHIEED 742 (919)
Q Consensus 710 ~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~i~~~ 742 (919)
..|..|+.+.|. ...+..++.+..|+.|.+..+
T Consensus 166 ~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn 199 (722)
T KOG0532|consen 166 PTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN 199 (722)
T ss_pred hhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh
Confidence 444444444443 333455566666666665554
No 84
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=1.8e-05 Score=88.95 Aligned_cols=193 Identities=16% Similarity=0.139 Sum_probs=110.8
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFN 282 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 282 (919)
.++||.+..++.+.+.+..+. -...+.++|+.|+||||+|+.+++...-.... -..++..-.....|.....
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~-------~~~pCg~C~~C~~i~~~~~ 84 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGP-------TSDPCGTCHNCISIKNSNH 84 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCC-------CCCCccccHHHHHHhccCC
Confidence 468998888888877776653 23478999999999999999998621000000 0011111112222221111
Q ss_pred cccc-ccccccCCHHHHHHHHHHH-----hccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEec-chhhhhhc
Q 036584 283 IMTA-LEDLETKTEEDLARSLRKS-----LEAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTR-IKDVAERS 353 (919)
Q Consensus 283 ~~~~-~~~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr-~~~v~~~~ 353 (919)
...- .........+++.. +.+. ..++.-++|+|+++.. +.++.++..+..-...+++|++|. ...+...+
T Consensus 85 ~Dv~eidaas~~~vddIR~-Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI 163 (491)
T PRK14964 85 PDVIEIDAASNTSVDDIKV-ILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTI 163 (491)
T ss_pred CCEEEEecccCCCHHHHHH-HHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHH
Confidence 0000 00000111222211 1111 1345668999999754 457778887776566677776554 34444433
Q ss_pred CCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHH
Q 036584 354 DDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAI 406 (919)
Q Consensus 354 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal 406 (919)
......+++.+++.++..+.+.+.+...... -..+.+..|++.++|.+--+
T Consensus 164 ~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~--i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 164 ISRCQRFDLQKIPTDKLVEHLVDIAKKENIE--HDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred HHhheeeecccccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 3334789999999999999998877544322 22355678999999987543
No 85
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.25 E-value=1.2e-05 Score=89.07 Aligned_cols=175 Identities=18% Similarity=0.197 Sum_probs=101.9
Q ss_pred CCCCccccccCHHHHHHHHhcCC-----------CCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCC
Q 036584 201 VEENPVGFEDDTDLLLAKLLDKE-----------QRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYK 269 (919)
Q Consensus 201 ~~~~~vGr~~~~~~l~~~L~~~~-----------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 269 (919)
...++.|+++.++++.+.+...- ...+-|.|+|++|+|||++|+.+++. ....| +.+..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~--- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG--- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch---
Confidence 34578999999999988875320 12456899999999999999999983 44443 22211
Q ss_pred HHHHHHHHHHHhcccccccccccCCHHHHHHHHHHHh-ccCceEEEEecccch-------------h---HHHHHHhhCC
Q 036584 270 IKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSL-EAYSYLMVIDDIWHK-------------E---DWVSLKSAFP 332 (919)
Q Consensus 270 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~-------------~---~~~~l~~~l~ 332 (919)
..+... ..+ ........+.+.. ...+.+|+|||++.. + .+..+...+.
T Consensus 190 -~~l~~~----~~g----------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld 254 (364)
T TIGR01242 190 -SELVRK----YIG----------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELD 254 (364)
T ss_pred -HHHHHH----hhh----------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhh
Confidence 111111 100 0112222333333 346789999998743 1 1223333332
Q ss_pred C--CCCCcEEEEEecchhhhh-hc---CCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcc
Q 036584 333 E--NKIGSRVIITTRIKDVAE-RS---DDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLP 403 (919)
Q Consensus 333 ~--~~~gs~iivTtr~~~v~~-~~---~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 403 (919)
. ...+..||.||...+... .. +.....+.++..+.++..++|..++........ .....+++.+.|..
T Consensus 255 ~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~---~~~~~la~~t~g~s 328 (364)
T TIGR01242 255 GFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED---VDLEAIAKMTEGAS 328 (364)
T ss_pred CCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc---CCHHHHHHHcCCCC
Confidence 2 223677888887543221 11 111257899999999999999988754432211 11356777777764
No 86
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=6.2e-06 Score=93.94 Aligned_cols=197 Identities=14% Similarity=0.139 Sum_probs=112.0
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFN 282 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 282 (919)
.+++|.+..++.+.+++..+. -.+.+.++|+.|+||||+|+.+++... ..+ |... ..+..-...+.+.....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~-C~~-----~~~~-~~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAIN-CLN-----PKDG-DCCNSCSVCESINTNQS 87 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhc-CCC-----CCCC-CCCcccHHHHHHHcCCC
Confidence 578999999999999887653 235788999999999999999987421 111 2111 11122222222222111
Q ss_pred cccc-ccccccCCHHHHHHHHHHHh-----ccCceEEEEecccc--hhHHHHHHhhCCCCCCCcEEEEEe-cchhhhhhc
Q 036584 283 IMTA-LEDLETKTEEDLARSLRKSL-----EAYSYLMVIDDIWH--KEDWVSLKSAFPENKIGSRVIITT-RIKDVAERS 353 (919)
Q Consensus 283 ~~~~-~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~~~ 353 (919)
.... .........+++. .+.+.+ .+++-++|+|+++. .+.+..++..+......+.+|++| ....+....
T Consensus 88 ~DiieIdaas~igVd~IR-eIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI 166 (605)
T PRK05896 88 VDIVELDAASNNGVDEIR-NIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTI 166 (605)
T ss_pred CceEEeccccccCHHHHH-HHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHH
Confidence 1000 0000011122222 222211 23445799999975 356777877776544456565554 433333222
Q ss_pred CCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcch-HHHHHH
Q 036584 354 DDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPL-AIVVLG 410 (919)
Q Consensus 354 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PL-al~~~~ 410 (919)
......+++.+++.++....+...+...... -..+.+..|++.++|.+- |+..+-
T Consensus 167 ~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~--Is~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 167 ISRCQRYNFKKLNNSELQELLKSIAKKEKIK--IEDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred HhhhhhcccCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 2223688999999999999888766433221 123457789999999765 444433
No 87
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=1.4e-05 Score=92.42 Aligned_cols=196 Identities=16% Similarity=0.084 Sum_probs=113.7
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFN 282 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 282 (919)
.++||-+..++.|...+..+. -...+.++|+.|+||||+|+.+++...-...+ ...++..-...+.|...-.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~-------~~~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGI-------TATPCGECDNCREIEQGRF 87 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCC-------CCCCCCCCHHHHHHHcCCC
Confidence 578999999998888887754 23457899999999999999998742111100 0011111123333321110
Q ss_pred cccc-ccccccCCHHHHHHHHHHH-----hccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecc-hhhhhhc
Q 036584 283 IMTA-LEDLETKTEEDLARSLRKS-----LEAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRI-KDVAERS 353 (919)
Q Consensus 283 ~~~~-~~~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~ 353 (919)
.... .........+++. .+.+. ..++.-++|||+++.. ..++.++..+-.-....++|++|.+ ..+...+
T Consensus 88 ~D~ieidaas~~~VddiR-~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI 166 (647)
T PRK07994 88 VDLIEIDAASRTKVEDTR-ELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 (647)
T ss_pred CCceeecccccCCHHHHH-HHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHH
Confidence 0000 0000001122222 22222 2456679999999854 4677777776655556666665544 4443322
Q ss_pred CCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHH
Q 036584 354 DDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVL 409 (919)
Q Consensus 354 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~ 409 (919)
......+.+.+++.++....+.+.+-.... ....+....|++.++|.+--+..+
T Consensus 167 ~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i--~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 167 LSRCLQFHLKALDVEQIRQQLEHILQAEQI--PFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred HhhheEeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 333378999999999999998876533222 122355678999999988654443
No 88
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=9.6e-06 Score=90.58 Aligned_cols=201 Identities=13% Similarity=0.097 Sum_probs=113.8
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEE-eCCCCCHHHHHHHHHHHh
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVS-VSQDYKIKDLLLRIIKSF 281 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~il~~l 281 (919)
.+++|.+..++.+.+++..+. -...+.++|++|+||||+|+.+++...-...+....|.. ...++..-...+.+....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 578898888888888887653 234688999999999999999987422111111111110 011111112222222211
Q ss_pred cccccc-cccccCCHHHHHHHHHHHh-----ccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEe-cchhhhhh
Q 036584 282 NIMTAL-EDLETKTEEDLARSLRKSL-----EAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITT-RIKDVAER 352 (919)
Q Consensus 282 ~~~~~~-~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~~ 352 (919)
...... ........+++.+ +.+.+ .+++-++|+|+++.. +.++.+...+......+.+|++| +...+...
T Consensus 95 ~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~t 173 (397)
T PRK14955 95 SLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (397)
T ss_pred CCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHH
Confidence 110000 0001111233332 33333 345568999999754 46888888877655567666655 43333322
Q ss_pred cCCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHH
Q 036584 353 SDDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIV 407 (919)
Q Consensus 353 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~ 407 (919)
.......+++.+++.++....+...+-.... .-..+.+..|++.++|.+--+.
T Consensus 174 l~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~--~i~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 174 IASRCQRFNFKRIPLEEIQQQLQGICEAEGI--SVDADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 2222257889999999998888776643221 1224567889999999885443
No 89
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=2.5e-05 Score=90.25 Aligned_cols=197 Identities=14% Similarity=0.125 Sum_probs=113.8
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCC--CEEEEEEeCCCCCHHHHHHHHHHH
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKF--DYCAWVSVSQDYKIKDLLLRIIKS 280 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~il~~ 280 (919)
+++||-+..++.|.+++..+. -...+.++|+.|+||||+|+.+++...-.... ...- ...+..-...+.|...
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~----~~pCg~C~~C~~i~~g 90 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT----ATPCGVCQACRDIDSG 90 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC----CCCCCccHHHHHHHcC
Confidence 568998888888888887754 34577899999999999999997631111100 0000 0111222223333110
Q ss_pred hccccccccc---ccCCHHHHHHHHHHHh-----ccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecc-hhh
Q 036584 281 FNIMTALEDL---ETKTEEDLARSLRKSL-----EAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRI-KDV 349 (919)
Q Consensus 281 l~~~~~~~~~---~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~-~~v 349 (919)
- ..+.-.+ .....+++.+.+ +.. .++.-++|||+++.. +.++.++..+..-....++|++|.+ ..+
T Consensus 91 ~--h~D~~eldaas~~~Vd~iReli-~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ki 167 (618)
T PRK14951 91 R--FVDYTELDAASNRGVDEVQQLL-EQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKV 167 (618)
T ss_pred C--CCceeecCcccccCHHHHHHHH-HHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhh
Confidence 0 0000000 111223332222 222 244558999999854 5677888777665556667665543 333
Q ss_pred hhhcCCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHH
Q 036584 350 AERSDDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVL 409 (919)
Q Consensus 350 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~ 409 (919)
..........+.+++++.++..+.+.+.+...+.. -..+.+..|++.++|.+--+..+
T Consensus 168 l~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~--ie~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 168 PVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP--AEPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred hHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 32222333789999999999999998776543322 22356778899999988555443
No 90
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.21 E-value=1.5e-05 Score=93.53 Aligned_cols=174 Identities=20% Similarity=0.164 Sum_probs=103.2
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCC---CEEEEEEeCCC---CCHHHHHHH
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKF---DYCAWVSVSQD---YKIKDLLLR 276 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~---~~~~~~~~~ 276 (919)
++++|++..+..+.+.+.... ...+.|+|++|+||||||+.+++.......+ ...-|+.+... .+...+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~--~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~ 231 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPF--PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNP 231 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCC--CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHH
Confidence 468999999999888875433 5579999999999999999998753322222 12334443211 122222111
Q ss_pred H---------------HHHhccccc--------------ccccccCCHHHHHHHHHHHhccCceEEEEecccch--hHHH
Q 036584 277 I---------------IKSFNIMTA--------------LEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHK--EDWV 325 (919)
Q Consensus 277 i---------------l~~l~~~~~--------------~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~ 325 (919)
+ +...+.... ..+.+..+ ...+..+.+.++++++.++-|+.|.. ..|+
T Consensus 232 llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~ 310 (615)
T TIGR02903 232 LLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPK 310 (615)
T ss_pred hcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-HHHHHHHHHHHhhCeEEeecceeccCCcccch
Confidence 1 111110000 00112222 34577788888888888887776643 3577
Q ss_pred HHHhhCCCCCCCcEEEE--Eecchh-hhhhcCCCCceEecCCCChHhHHHHHHHHhc
Q 036584 326 SLKSAFPENKIGSRVII--TTRIKD-VAERSDDRNYVHELRFLRQDESWQLFCERAF 379 (919)
Q Consensus 326 ~l~~~l~~~~~gs~iiv--Ttr~~~-v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 379 (919)
.+...+....+...+++ ||++.. +..........+.+.+++.+|.+.++.+.+.
T Consensus 311 ~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 311 YIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAE 367 (615)
T ss_pred hhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHH
Confidence 77766666555555555 555443 1222222225678999999999999988764
No 91
>PRK09087 hypothetical protein; Validated
Probab=98.19 E-value=2.8e-05 Score=79.30 Aligned_cols=141 Identities=16% Similarity=0.113 Sum_probs=86.4
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKS 305 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 305 (919)
.+.+.|+|++|+|||+|++.++... . ..+++.. .+..+++ ..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~--~-----~~~i~~~------~~~~~~~-------------------------~~ 85 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS--D-----ALLIHPN------EIGSDAA-------------------------NA 85 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc--C-----CEEecHH------HcchHHH-------------------------Hh
Confidence 4578999999999999999998732 1 1233321 0111111 11
Q ss_pred hccCceEEEEecccch----hHHHHHHhhCCCCCCCcEEEEEecc---------hhhhhhcCCCCceEecCCCChHhHHH
Q 036584 306 LEAYSYLMVIDDIWHK----EDWVSLKSAFPENKIGSRVIITTRI---------KDVAERSDDRNYVHELRFLRQDESWQ 372 (919)
Q Consensus 306 l~~~~~LlVlDdv~~~----~~~~~l~~~l~~~~~gs~iivTtr~---------~~v~~~~~~~~~~~~l~~L~~~~~~~ 372 (919)
+.+ -+|++||+... +.+-.+...+. ..|..+|+|++. +++...+... ..+++++++.++-.+
T Consensus 86 ~~~--~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~g-l~~~l~~pd~e~~~~ 160 (226)
T PRK09087 86 AAE--GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAA-TVVEIGEPDDALLSQ 160 (226)
T ss_pred hhc--CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCC-ceeecCCCCHHHHHH
Confidence 111 27888999532 22222322222 235678888863 2333333333 689999999999999
Q ss_pred HHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHHHH
Q 036584 373 LFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVLGG 411 (919)
Q Consensus 373 lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~~~ 411 (919)
++++++..... .--+++..-|++++.|..-++..+-.
T Consensus 161 iL~~~~~~~~~--~l~~ev~~~La~~~~r~~~~l~~~l~ 197 (226)
T PRK09087 161 VIFKLFADRQL--YVDPHVVYYLVSRMERSLFAAQTIVD 197 (226)
T ss_pred HHHHHHHHcCC--CCCHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99988754322 22356777888888888877765433
No 92
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.18 E-value=2.3e-05 Score=90.31 Aligned_cols=196 Identities=14% Similarity=0.094 Sum_probs=110.5
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFN 282 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 282 (919)
.++||.+..+..|..++..+. -...+.++|+.|+||||+|+.+.+...-..... ...+..-...+.+...-.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~-------~~pCg~C~sCr~i~~g~~ 87 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQH-------GEPCGVCQSCTQIDAGRY 87 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC-------CCCCcccHHHHHHhccCc
Confidence 578999999999999988753 245789999999999999999987411111100 000111111111111000
Q ss_pred ccc-cccccccCCHHHHHHHHHH----HhccCceEEEEecccchh--HHHHHHhhCCCCCCCcEEEEEecch-hhhhhcC
Q 036584 283 IMT-ALEDLETKTEEDLARSLRK----SLEAYSYLMVIDDIWHKE--DWVSLKSAFPENKIGSRVIITTRIK-DVAERSD 354 (919)
Q Consensus 283 ~~~-~~~~~~~~~~~~~~~~l~~----~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~ 354 (919)
... ..........+.+.+.+.. -..+++-++|||+++... ....++..+......+++|++|.+. .+...+.
T Consensus 88 ~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIr 167 (709)
T PRK08691 88 VDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVL 167 (709)
T ss_pred cceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHH
Confidence 000 0000001112222222211 123566799999998643 4566776665444456677766543 2222222
Q ss_pred CCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHH
Q 036584 355 DRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVV 408 (919)
Q Consensus 355 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~ 408 (919)
+....+.+.+++.++....+.+.+-..... -..+.+..|++.++|.+.-+..
T Consensus 168 SRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~--id~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 168 SRCLQFVLRNMTAQQVADHLAHVLDSEKIA--YEPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred HHHhhhhcCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHhCCCHHHHHH
Confidence 222567889999999999998776543322 2245678899999999854433
No 93
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=2.8e-05 Score=88.86 Aligned_cols=195 Identities=13% Similarity=0.038 Sum_probs=110.0
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFN 282 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 282 (919)
.++||-+..++.+.+++..+. -...+.++|+.|+||||+|+.+++...-...+. ..++..-...+.|...-.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-------~~pCg~C~~C~~i~~g~~ 87 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVS-------ANPCNDCENCREIDEGRF 87 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------cccCCCCHHHHHHhcCCC
Confidence 468999999999999997753 234678999999999999999987421111110 001111111222111000
Q ss_pred cccc-ccccccCCHHHHHHHHHHHh-----ccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecc-hhhhhhc
Q 036584 283 IMTA-LEDLETKTEEDLARSLRKSL-----EAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRI-KDVAERS 353 (919)
Q Consensus 283 ~~~~-~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~ 353 (919)
...- .........+++.+ +.+.+ .++.-++|+|+++.. +..+.++..+..-...+++|++|.+ ..+...+
T Consensus 88 ~d~~eidaas~~~v~~iR~-l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI 166 (509)
T PRK14958 88 PDLFEVDAASRTKVEDTRE-LLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTV 166 (509)
T ss_pred ceEEEEcccccCCHHHHHH-HHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHH
Confidence 0000 00000111222222 22211 355669999999854 5677777777665556777766543 3333222
Q ss_pred CCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHH
Q 036584 354 DDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVV 408 (919)
Q Consensus 354 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~ 408 (919)
......+++++++.++....+.+.+-..... -..+....|++.++|.+.-+..
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~l~~il~~egi~--~~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 167 LSRCLQFHLAQLPPLQIAAHCQHLLKEENVE--FENAALDLLARAANGSVRDALS 219 (509)
T ss_pred HHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHH
Confidence 2223678899999999888776665433222 1234567788999998854433
No 94
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.17 E-value=1.7e-07 Score=101.72 Aligned_cols=148 Identities=22% Similarity=0.245 Sum_probs=80.3
Q ss_pred cchhhhccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccChhhhcCCCCcEEecCCCCCccc
Q 036584 602 HLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPV 681 (919)
Q Consensus 602 ~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~ 681 (919)
.+|..+..|-.|..|.|.. +. +. .+|..+++|..|.||+|+.|.+..+|..++.|+ |+.|-+++| .+.
T Consensus 89 elp~~~~~f~~Le~liLy~-n~-----~r---~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN--kl~ 156 (722)
T KOG0532|consen 89 ELPEEACAFVSLESLILYH-NC-----IR---TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN--KLT 156 (722)
T ss_pred cCchHHHHHHHHHHHHHHh-cc-----ce---ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC--ccc
Confidence 3444555555555555655 44 44 566666666666666666666666666665553 566666666 566
Q ss_pred ccCccccccccccccccc----cccccCCCCcCcCccccccccc-ccchhhccCCCCCCeEEeeecCccccccccchhhH
Q 036584 682 ELPIEINMMQELRHLIGN----FKGTLPIENLTNLQTLKYVQSK-SWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFES 756 (919)
Q Consensus 682 ~lp~~i~~L~~L~~L~~~----~~~~~~i~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~ 756 (919)
.+|..|+.+.+|.+|... ...+..++.+.+|+.|....++ ...+.++..| .|..|+++++. .... |..
T Consensus 157 ~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNk---is~i---Pv~ 229 (722)
T KOG0532|consen 157 SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNK---ISYL---PVD 229 (722)
T ss_pred cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCc---eeec---chh
Confidence 666666655666666321 1233335566666666555554 3344455533 35556666553 1111 245
Q ss_pred HhhcCCCcEEEE
Q 036584 757 IAKLKNLRFLSV 768 (919)
Q Consensus 757 l~~l~~L~~L~l 768 (919)
+.++.+|+.|.|
T Consensus 230 fr~m~~Lq~l~L 241 (722)
T KOG0532|consen 230 FRKMRHLQVLQL 241 (722)
T ss_pred hhhhhhheeeee
Confidence 555666666665
No 95
>PRK05642 DNA replication initiation factor; Validated
Probab=98.17 E-value=2e-05 Score=81.20 Aligned_cols=154 Identities=21% Similarity=0.308 Sum_probs=92.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKS 305 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 305 (919)
...+.|+|..|+|||.|++.+++. ....-..++|++..+ +... ...+.+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~------~~~~----------------------~~~~~~~ 94 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAE------LLDR----------------------GPELLDN 94 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHH------HHhh----------------------hHHHHHh
Confidence 357899999999999999999874 222223467776542 1110 0112233
Q ss_pred hccCceEEEEecccch---hHHHH-HHhhCCC-CCCCcEEEEEecchhh---------hhhcCCCCceEecCCCChHhHH
Q 036584 306 LEAYSYLMVIDDIWHK---EDWVS-LKSAFPE-NKIGSRVIITTRIKDV---------AERSDDRNYVHELRFLRQDESW 371 (919)
Q Consensus 306 l~~~~~LlVlDdv~~~---~~~~~-l~~~l~~-~~~gs~iivTtr~~~v---------~~~~~~~~~~~~l~~L~~~~~~ 371 (919)
+++-. +||+||+... ..|.. +...+.. ...|..+|+|++...- ...+... ..+++++++.++-.
T Consensus 95 ~~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~g-l~~~l~~~~~e~~~ 172 (234)
T PRK05642 95 LEQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLA-LVFQMRGLSDEDKL 172 (234)
T ss_pred hhhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcC-eeeecCCCCHHHHH
Confidence 33222 6889999633 35543 3333322 2235678888864321 1122222 57889999999999
Q ss_pred HHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHHHHHh
Q 036584 372 QLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVLGGLL 413 (919)
Q Consensus 372 ~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~~~~l 413 (919)
++++.++...... --+++..-|++++.|..-.+..+-..|
T Consensus 173 ~il~~ka~~~~~~--l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 173 RALQLRASRRGLH--LTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHHHHHHcCCC--CCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 9998666543222 224677788888888876665544433
No 96
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.15 E-value=4.8e-05 Score=85.87 Aligned_cols=167 Identities=11% Similarity=0.069 Sum_probs=101.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKS 305 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 305 (919)
...+.|+|..|+|||+|++.+.+.......-..+++++. +++...+...+.... .....+.+.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~~-----------~~~~~~~~~ 203 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG------DEFARKAVDILQKTH-----------KEIEQFKNE 203 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHHhh-----------hHHHHHHHH
Confidence 457899999999999999999984221122223455544 456666666553210 112334444
Q ss_pred hccCceEEEEecccch---hHH-HHHHhhCCC-CCCCcEEEEEecch---------hhhhhcCCCCceEecCCCChHhHH
Q 036584 306 LEAYSYLMVIDDIWHK---EDW-VSLKSAFPE-NKIGSRVIITTRIK---------DVAERSDDRNYVHELRFLRQDESW 371 (919)
Q Consensus 306 l~~~~~LlVlDdv~~~---~~~-~~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~~l~~L~~~~~~ 371 (919)
++. .-+||+||+... +.+ +.+...+.. ...|..||+|+... .+...+... -.+.+++++.++..
T Consensus 204 ~~~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~G-l~~~L~~pd~e~r~ 281 (450)
T PRK14087 204 ICQ-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMG-LSIAIQKLDNKTAT 281 (450)
T ss_pred hcc-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCC-ceeccCCcCHHHHH
Confidence 443 448889999643 222 233322221 12345788886533 222222222 57889999999999
Q ss_pred HHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHHHH
Q 036584 372 QLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVLGG 411 (919)
Q Consensus 372 ~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~~~ 411 (919)
+++.+++-.......-.++++.-|++.++|.|-.+..+..
T Consensus 282 ~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 282 AIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 9999887543211123356788899999999987765544
No 97
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.14 E-value=2.3e-06 Score=96.60 Aligned_cols=175 Identities=26% Similarity=0.325 Sum_probs=102.0
Q ss_pred hccCceEEEEEeccCccccccccccchhhhhhhcccc-cceEEeecCCCccccChhhhcCCCCcEEecCCCCCcccccCc
Q 036584 607 FERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLI-HLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVELPI 685 (919)
Q Consensus 607 ~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~-~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~ 685 (919)
+..+..+..|++.+ +. +. ++|..++.+. +|++|++++|.+..+|..+..+++|+.|++++| .+..+|.
T Consensus 112 ~~~~~~l~~L~l~~-n~-----i~---~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N--~l~~l~~ 180 (394)
T COG4886 112 LLELTNLTSLDLDN-NN-----IT---DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN--DLSDLPK 180 (394)
T ss_pred hhcccceeEEecCC-cc-----cc---cCccccccchhhcccccccccchhhhhhhhhccccccccccCCc--hhhhhhh
Confidence 34456777788777 66 66 6777777774 788888888888777777778888888888877 6777776
Q ss_pred cccccccccccccccccccCCCCcCcCcccccccccccchhhc-cCCCCCCeEEeeecCccccccccchhhHHhhcCCCc
Q 036584 686 EINMMQELRHLIGNFKGTLPIENLTNLQTLKYVQSKSWNKVNT-AKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLR 764 (919)
Q Consensus 686 ~i~~L~~L~~L~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~l-~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~ 764 (919)
... .+++|+.|.+..+....+... ..+..|..|.+..+. ..... ..+..+.++.
T Consensus 181 ~~~-------------------~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~---~~~~~---~~~~~~~~l~ 235 (394)
T COG4886 181 LLS-------------------NLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS---IIELL---SSLSNLKNLS 235 (394)
T ss_pred hhh-------------------hhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc---ceecc---hhhhhccccc
Confidence 543 334444444444442222222 344456777776653 11111 3445555555
Q ss_pred EEEEeecCCCCccC-cCCCCCCCCceeEEEceec-CCCCcchhccCCCcceEEEEccCCC
Q 036584 765 FLSVKLLDANSFAS-LQPLSHCQCLVDLRLSGRM-KKLPEDMHVFLPNLECLSLSVPYPK 822 (919)
Q Consensus 765 ~L~l~~~~~~~~~~-~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~ 822 (919)
.|.+ ..+.+.. ...++.+++|+.|+++++. ..++. +..+ .+|+.|+++++.+.
T Consensus 236 ~l~l---~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~-~~l~~L~~s~n~~~ 290 (394)
T COG4886 236 GLEL---SNNKLEDLPESIGNLSNLETLDLSNNQISSISS-LGSL-TNLRELDLSGNSLS 290 (394)
T ss_pred cccc---CCceeeeccchhccccccceecccccccccccc-cccc-CccCEEeccCcccc
Confidence 5553 2333222 2335555666666666654 33333 4444 66666666666654
No 98
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=5.5e-08 Score=97.07 Aligned_cols=180 Identities=24% Similarity=0.186 Sum_probs=120.8
Q ss_pred cCccccccccc---ccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCcC-CCCCCC
Q 036584 711 NLQTLKYVQSK---SWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASLQ-PLSHCQ 786 (919)
Q Consensus 711 ~L~~L~~~~~~---~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~l~~~~ 786 (919)
.||.|++.... ......+..+.+|+.|.+.++... +.. . ..+.+-.+|+.|+|+.+++-.-..+. .+..|.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~Ld---D~I-~-~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs 260 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLD---DPI-V-NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCS 260 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccC---cHH-H-HHHhccccceeeccccccccchhHHHHHHHhhh
Confidence 46666666554 334456788899999999987622 222 2 56777789999999876432211121 267799
Q ss_pred CceeEEEceecCC---CCcchhccCCCcceEEEEccC--CCCCCchhh-hcCCCCCeEEEeeccccCeeEEEcCCCCccc
Q 036584 787 CLVDLRLSGRMKK---LPEDMHVFLPNLECLSLSVPY--PKEDPMPAL-EMLPNLIILDLHFRCHYVKKLGCRAEGFPLL 860 (919)
Q Consensus 787 ~L~~L~L~~~~~~---~p~~~~~l~~~L~~L~L~~~~--l~~~~~~~l-~~lp~L~~L~L~~~~~~~~~~~~~~~~f~~L 860 (919)
.|..|+|+++... +...+...-++|+.|+|+++. +....+..+ ..+|+|..|+|+.+..........+..|+-|
T Consensus 261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L 340 (419)
T KOG2120|consen 261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL 340 (419)
T ss_pred hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence 9999999987521 222222334789999999983 333344454 4799999999996554333322234579999
Q ss_pred ceeEEe-cCCcc-cEEEccCCcccccceEEccccCccC
Q 036584 861 EILQLD-ADGLV-EWQVEEGAMPVLRGLKIAAEIPKLK 896 (919)
Q Consensus 861 ~~L~l~-~~~l~-~~~~~~~~~p~L~~L~l~~nC~~l~ 896 (919)
++|.++ |-.+. +--.+...+|+|.+|++.+ |-.-+
T Consensus 341 ~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g-~vsdt 377 (419)
T KOG2120|consen 341 QHLSLSRCYDIIPETLLELNSKPSLVYLDVFG-CVSDT 377 (419)
T ss_pred eeeehhhhcCCChHHeeeeccCcceEEEEecc-ccCch
Confidence 999999 76554 3344667899999999999 75443
No 99
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.13 E-value=4.3e-06 Score=89.36 Aligned_cols=102 Identities=11% Similarity=0.084 Sum_probs=64.5
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCC--CHHHHHHHHHHHhcccccccccc
Q 036584 214 LLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDY--KIKDLLLRIIKSFNIMTALEDLE 291 (919)
Q Consensus 214 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~il~~l~~~~~~~~~~ 291 (919)
++++.+..-. .-+-..|+|++|+||||||+.+|++.... +|+.++||.+.+.+ ...++++.+...+-.. ..+
T Consensus 158 rvID~l~PIG-kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~s----t~d 231 (416)
T PRK09376 158 RIIDLIAPIG-KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVAS----TFD 231 (416)
T ss_pred eeeeeecccc-cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEE----CCC
Confidence 4555554422 24567899999999999999999964443 89999999998887 6667777765221111 111
Q ss_pred cCCHHH-----HHHHHHHH--hccCceEEEEecccch
Q 036584 292 TKTEED-----LARSLRKS--LEAYSYLMVIDDIWHK 321 (919)
Q Consensus 292 ~~~~~~-----~~~~l~~~--l~~~~~LlVlDdv~~~ 321 (919)
...... .+-...++ -.+++.+|++|++...
T Consensus 232 ~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 232 EPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHHH
Confidence 111111 11111222 2679999999999643
No 100
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.13 E-value=2.7e-05 Score=80.31 Aligned_cols=169 Identities=15% Similarity=0.146 Sum_probs=94.8
Q ss_pred ccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccccc
Q 036584 207 GFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTA 286 (919)
Q Consensus 207 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~ 286 (919)
|..+.....+..+.........+.|+|.+|+|||+||+.+++... ... ....+++..+... . +
T Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~-~~~~~i~~~~~~~------~----~----- 85 (227)
T PRK08903 23 GENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS-YGG-RNARYLDAASPLL------A----F----- 85 (227)
T ss_pred CCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEehHHhHH------H----H-----
Confidence 544444333333322223456889999999999999999998421 112 2345555432100 0 0
Q ss_pred ccccccCCHHHHHHHHHHHhccCceEEEEecccchhHH--HHHHhhCCC-CCCCc-EEEEEecchhhhh--------hcC
Q 036584 287 LEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHKEDW--VSLKSAFPE-NKIGS-RVIITTRIKDVAE--------RSD 354 (919)
Q Consensus 287 ~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~--~~l~~~l~~-~~~gs-~iivTtr~~~v~~--------~~~ 354 (919)
... ...-+||+||++....+ ..+...+.. ...+. .+|+|++...... .+.
T Consensus 86 -----------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~ 147 (227)
T PRK08903 86 -----------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLG 147 (227)
T ss_pred -----------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHh
Confidence 011 22447999999754322 233333322 11233 4667766433221 211
Q ss_pred CCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHHHHHh
Q 036584 355 DRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVLGGLL 413 (919)
Q Consensus 355 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~~~~l 413 (919)
.. ..+.+++++.++-..++.+.+-... ..--++....+++.+.|.+..+..+...+
T Consensus 148 ~~-~~i~l~pl~~~~~~~~l~~~~~~~~--v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 148 WG-LVYELKPLSDADKIAALKAAAAERG--LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred cC-eEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 11 5889999999887777765443222 22234567778888999998887776655
No 101
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.13 E-value=5.8e-05 Score=76.70 Aligned_cols=164 Identities=16% Similarity=0.175 Sum_probs=93.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHH
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRK 304 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 304 (919)
....+.|+|..|+|||.|.+.+++.......=..+++++. .++...+...+... . ...+.+
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~------~~f~~~~~~~~~~~---------~----~~~~~~ 93 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA------EEFIREFADALRDG---------E----IEEFKD 93 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH------HHHHHHHHHHHHTT---------S----HHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH------HHHHHHHHHHHHcc---------c----chhhhh
Confidence 3557899999999999999999984221111123566654 34555555544321 1 122334
Q ss_pred HhccCceEEEEecccch---hHHHHHH-hhCCC-CCCCcEEEEEecchh---------hhhhcCCCCceEecCCCChHhH
Q 036584 305 SLEAYSYLMVIDDIWHK---EDWVSLK-SAFPE-NKIGSRVIITTRIKD---------VAERSDDRNYVHELRFLRQDES 370 (919)
Q Consensus 305 ~l~~~~~LlVlDdv~~~---~~~~~l~-~~l~~-~~~gs~iivTtr~~~---------v~~~~~~~~~~~~l~~L~~~~~ 370 (919)
.+++ -=+|++||++.. ..|.... ..+.. ...|.+||+|+.... +....... -.+++++++.++.
T Consensus 94 ~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~G-l~~~l~~pd~~~r 171 (219)
T PF00308_consen 94 RLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWG-LVVELQPPDDEDR 171 (219)
T ss_dssp HHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCS-EEEEE----HHHH
T ss_pred hhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhc-chhhcCCCCHHHH
Confidence 4442 448899999754 2343322 22221 134678999995432 22222232 6899999999999
Q ss_pred HHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHHHH
Q 036584 371 WQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVLGG 411 (919)
Q Consensus 371 ~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~~~ 411 (919)
.+++.+++...... --++++.-|++.+.+..-.+..+-.
T Consensus 172 ~~il~~~a~~~~~~--l~~~v~~~l~~~~~~~~r~L~~~l~ 210 (219)
T PF00308_consen 172 RRILQKKAKERGIE--LPEEVIEYLARRFRRDVRELEGALN 210 (219)
T ss_dssp HHHHHHHHHHTT----S-HHHHHHHHHHTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC--CcHHHHHHHHHhhcCCHHHHHHHHH
Confidence 99999988654432 2345667777777776655544433
No 102
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.13 E-value=2e-06 Score=96.96 Aligned_cols=99 Identities=28% Similarity=0.371 Sum_probs=83.4
Q ss_pred CCcccEEEEecccccccccccccchhhhccCc-eEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCcccc
Q 036584 580 NSLARSLLLFNQWWDETLGVKRHLPLLFERFF-LLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGIL 658 (919)
Q Consensus 580 ~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~-~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~L 658 (919)
...+..|.+.++. ...++.....+. +|+.|++++ +. +. .+|..++.+++|+.|++++|.+..+
T Consensus 115 ~~~l~~L~l~~n~-------i~~i~~~~~~~~~nL~~L~l~~-N~-----i~---~l~~~~~~l~~L~~L~l~~N~l~~l 178 (394)
T COG4886 115 LTNLTSLDLDNNN-------ITDIPPLIGLLKSNLKELDLSD-NK-----IE---SLPSPLRNLPNLKNLDLSFNDLSDL 178 (394)
T ss_pred ccceeEEecCCcc-------cccCccccccchhhcccccccc-cc-----hh---hhhhhhhccccccccccCCchhhhh
Confidence 5678888888872 224555566664 999999999 88 87 8888899999999999999999999
Q ss_pred ChhhhcCCCCcEEecCCCCCcccccCcccccccccccc
Q 036584 659 PSSIVKLQRLQTLDFSGDVGCPVELPIEINMMQELRHL 696 (919)
Q Consensus 659 P~~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~L~~L 696 (919)
|...+.+.+|+.|++++| .+..+|..+..+..|..|
T Consensus 179 ~~~~~~~~~L~~L~ls~N--~i~~l~~~~~~~~~L~~l 214 (394)
T COG4886 179 PKLLSNLSNLNNLDLSGN--KISDLPPEIELLSALEEL 214 (394)
T ss_pred hhhhhhhhhhhheeccCC--ccccCchhhhhhhhhhhh
Confidence 998889999999999999 899999977666666666
No 103
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.12 E-value=2.3e-05 Score=82.50 Aligned_cols=157 Identities=17% Similarity=0.161 Sum_probs=81.1
Q ss_pred CccccccCHHHHHHHHhc-------------CCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCH
Q 036584 204 NPVGFEDDTDLLLAKLLD-------------KEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKI 270 (919)
Q Consensus 204 ~~vGr~~~~~~l~~~L~~-------------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 270 (919)
.++|.+..++.|.+.... ..+....+.++|++|+||||+|+.+++.....+.-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA--- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence 467776666555433211 1224557889999999999999999863111111111123333211
Q ss_pred HHHHHHHHHHhcccccccccccCCHHHHHHHHHHHhccCceEEEEecccch----------hHHHHHHhhCCCCCCCcEE
Q 036584 271 KDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHK----------EDWVSLKSAFPENKIGSRV 340 (919)
Q Consensus 271 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------~~~~~l~~~l~~~~~gs~i 340 (919)
++. ....+ .........+.+ . ..-+|++|+++.. +..+.+...+........+
T Consensus 84 -~l~----~~~~g---------~~~~~~~~~~~~-a--~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~v 146 (261)
T TIGR02881 84 -DLV----GEYIG---------HTAQKTREVIKK-A--LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVL 146 (261)
T ss_pred -Hhh----hhhcc---------chHHHHHHHHHh-c--cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEE
Confidence 111 11100 011112222222 1 2358999999742 2344555555444434456
Q ss_pred EEEecchhhhh------hcCCC-CceEecCCCChHhHHHHHHHHhcc
Q 036584 341 IITTRIKDVAE------RSDDR-NYVHELRFLRQDESWQLFCERAFR 380 (919)
Q Consensus 341 ivTtr~~~v~~------~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~ 380 (919)
|+++...+... ..... ...+.+++++.++-.+++.+.+..
T Consensus 147 ila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 147 ILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred EecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 66654433211 01111 156889999999999999877643
No 104
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.12 E-value=5.7e-05 Score=87.63 Aligned_cols=200 Identities=16% Similarity=0.126 Sum_probs=116.0
Q ss_pred CCCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCC--EEEEEEeCCCCCHHHHHHHHHH
Q 036584 202 EENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFD--YCAWVSVSQDYKIKDLLLRIIK 279 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~il~ 279 (919)
-.+++|.+..++.+.+++..+. -...+.++|+.|+||||+|+.+++...-..... ...+ ..+..-...+.|..
T Consensus 23 f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~~C~~i~~ 97 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGEHCQAIME 97 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccHHHHHHhc
Confidence 3578999999999999887753 244788999999999999999987421111110 0000 01111122222222
Q ss_pred Hhccccc-ccccccCCHHHHHHHHHHHh-----ccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEe-cchhhh
Q 036584 280 SFNIMTA-LEDLETKTEEDLARSLRKSL-----EAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITT-RIKDVA 350 (919)
Q Consensus 280 ~l~~~~~-~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt-r~~~v~ 350 (919)
.-....- .........+++.+ +.+.+ .+++-++|+|+++.. ...+.++..+-.-..++.+|++| ....+.
T Consensus 98 g~h~Dv~e~~a~s~~gvd~IRe-Iie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll 176 (598)
T PRK09111 98 GRHVDVLEMDAASHTGVDDIRE-IIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVP 176 (598)
T ss_pred CCCCceEEecccccCCHHHHHH-HHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhh
Confidence 1111000 00001112333222 22222 344568999999754 45677777776655567776655 333443
Q ss_pred hhcCCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHH
Q 036584 351 ERSDDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVL 409 (919)
Q Consensus 351 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~ 409 (919)
..+......+++..++.++....+.+.+...... -..+....|++.++|.+.-+...
T Consensus 177 ~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~--i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 177 VTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE--VEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 3333333689999999999999998876433322 22356788999999998655443
No 105
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=6e-05 Score=83.85 Aligned_cols=180 Identities=16% Similarity=0.197 Sum_probs=105.8
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCcc------CCCCEE-EEEEeCCCCCHHHHHH
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVK------NKFDYC-AWVSVSQDYKIKDLLL 275 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~------~~f~~~-~wv~~~~~~~~~~~~~ 275 (919)
.+++|.+..++.+.+.+..+. -.+.+.++|++|+||||+|+.+.+...-. ..|... +-+........ +.++
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~i~ 94 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV-DDIR 94 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-HHHH
Confidence 568999999999999887653 34588899999999999999998742110 112111 11111110000 1111
Q ss_pred HHHHHhcccccccccccCCHHHHHHHHHHHhccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEe-cchhhhhh
Q 036584 276 RIIKSFNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITT-RIKDVAER 352 (919)
Q Consensus 276 ~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~~ 352 (919)
.++.++.. ....+++-++++|+++.. ..++.+...+......+.+|++| ....+...
T Consensus 95 ~l~~~~~~--------------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 95 NLIDQVRI--------------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred HHHHHHhh--------------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence 11111100 011244568999998754 34677776665544455666555 33333222
Q ss_pred cCCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHH
Q 036584 353 SDDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAI 406 (919)
Q Consensus 353 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal 406 (919)
.......++.++++.++....+...+...... -..+.+..|++.++|.+-.+
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~--i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK--FEDDALHIIAQKADGALRDA 206 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhCCCCHHHH
Confidence 22223578999999999998888776543321 12356778888999876544
No 106
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.10 E-value=4.7e-07 Score=92.95 Aligned_cols=68 Identities=16% Similarity=0.256 Sum_probs=46.2
Q ss_pred chhhhccCceEEEEEeccCcccccccccc--chhhhhhhcccccceEEeecC--CCc--cccChhh-------hcCCCCc
Q 036584 603 LPLLFERFFLLRVFDVEADLDRESTLMHW--SNRLSEKIGDLIHLKYLGLRN--SNI--GILPSSI-------VKLQRLQ 669 (919)
Q Consensus 603 l~~~~~~~~~LrvL~L~~~~~~~~~~i~~--~~~lp~~i~~L~~Lr~L~L~~--~~i--~~LP~~l-------~~L~~L~ 669 (919)
+......+..+..|+|++ +. +.. ...+.+.+.+.+.|+..+++. ++- .++|+.+ -.+++|+
T Consensus 22 v~~~~~~~~s~~~l~lsg-nt-----~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~ 95 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSG-NT-----FGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQ 95 (382)
T ss_pred HHHHhcccCceEEEeccC-Cc-----hhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCcee
Confidence 344556788899999999 55 431 123445566778899999886 322 5666653 3457899
Q ss_pred EEecCCC
Q 036584 670 TLDFSGD 676 (919)
Q Consensus 670 ~L~L~~~ 676 (919)
+||||.|
T Consensus 96 ~ldLSDN 102 (382)
T KOG1909|consen 96 KLDLSDN 102 (382)
T ss_pred Eeecccc
Confidence 9999998
No 107
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=7.3e-05 Score=89.72 Aligned_cols=193 Identities=15% Similarity=0.075 Sum_probs=112.3
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFN 282 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 282 (919)
.++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+.+...-..... ...+..-..++.|...-.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~-------~~pCg~C~sC~~~~~g~~ 86 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPT-------STPCGECDSCVALAPGGP 86 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCC-------CCCCcccHHHHHHHcCCC
Confidence 468999988999999888754 235688999999999999999987422111100 000111111222211100
Q ss_pred cccccccc---ccCCHHHHHHHHHHH-----hccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecc-hhhhh
Q 036584 283 IMTALEDL---ETKTEEDLARSLRKS-----LEAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRI-KDVAE 351 (919)
Q Consensus 283 ~~~~~~~~---~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~ 351 (919)
...+...+ .....+++.+ +.+. ..++.-++|||+++.. +.++.|+..+..-...+.+|++|.+ ..+..
T Consensus 87 ~~~dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~ 165 (824)
T PRK07764 87 GSLDVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIG 165 (824)
T ss_pred CCCcEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence 00000000 0111233322 2222 2355668999999854 5677888888776666767665543 34443
Q ss_pred hcCCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHH
Q 036584 352 RSDDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAI 406 (919)
Q Consensus 352 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal 406 (919)
.+......|++..++.++..+++.+.+-.... ....+....|++.++|.+..+
T Consensus 166 TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv--~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 166 TIRSRTHHYPFRLVPPEVMRGYLERICAQEGV--PVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred HHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 33344478999999999999888776533222 122345677899999988444
No 108
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=8.2e-05 Score=85.70 Aligned_cols=193 Identities=14% Similarity=0.088 Sum_probs=107.9
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFN 282 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 282 (919)
.++||-+..++.+..++..+. -...+.++|+.|+||||+|+.+++...-... +. ..++..-.....+...-.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~------~~-~~pcg~C~~C~~i~~~~~ 87 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETG------VT-ATPCGVCSACLEIDSGRF 87 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCC------CC-CCCCCCCHHHHHHhcCCC
Confidence 468999999998888887653 2346789999999999999999874211100 00 001111111111111000
Q ss_pred ccc-cccccccCCHHHHHHHHHHHh-----ccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecch-hhhhhc
Q 036584 283 IMT-ALEDLETKTEEDLARSLRKSL-----EAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRIK-DVAERS 353 (919)
Q Consensus 283 ~~~-~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~ 353 (919)
... ..........+++. .+.+.. .+++-++|+|+++.. +..+.++..+......+.+|++|.+. .+...+
T Consensus 88 ~d~~ei~~~~~~~vd~ir-~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI 166 (527)
T PRK14969 88 VDLIEVDAASNTQVDAMR-ELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTV 166 (527)
T ss_pred CceeEeeccccCCHHHHH-HHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhH
Confidence 000 00000011122222 222212 355679999999855 45677777776655566677666443 222111
Q ss_pred CCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHH
Q 036584 354 DDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAI 406 (919)
Q Consensus 354 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal 406 (919)
......+++++++.++....+.+.+...... ...+....|++.++|.+--+
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~L~~il~~egi~--~~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 167 LSRCLQFNLKQMPPPLIVSHLQHILEQENIP--FDATALQLLARAAAGSMRDA 217 (527)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 1222678999999999998887765433221 22345678899999988533
No 109
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=8.7e-05 Score=85.59 Aligned_cols=198 Identities=17% Similarity=0.128 Sum_probs=113.5
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFN 282 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 282 (919)
.++||.+..++.|.+++..+. -...+.++|+.|+||||+|+.+++...-....+ ..++..-...+.+...-.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-------~~pCg~C~~C~~i~~~~~ 84 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPT-------ATPCGVCESCVALAPNGP 84 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-------CCcccccHHHHHhhcccC
Confidence 478999999999999987753 334678999999999999999997421111000 011111112222221100
Q ss_pred ccccccccc---cCCHHHHHHHHHHHh-----ccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEe-cchhhhh
Q 036584 283 IMTALEDLE---TKTEEDLARSLRKSL-----EAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITT-RIKDVAE 351 (919)
Q Consensus 283 ~~~~~~~~~---~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~ 351 (919)
...+.-..+ ....+++ +.+.+.+ .+++-++|+|+++.. +..+.++..+..-.....+|++| ....+..
T Consensus 85 ~~~dvieidaas~~gvd~i-Rel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~ 163 (584)
T PRK14952 85 GSIDVVELDAASHGGVDDT-RELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLP 163 (584)
T ss_pred CCceEEEeccccccCHHHH-HHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHH
Confidence 000000000 0112222 1222211 345669999999743 56778888777655566666555 4444443
Q ss_pred hcCCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcch-HHHHHHH
Q 036584 352 RSDDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPL-AIVVLGG 411 (919)
Q Consensus 352 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PL-al~~~~~ 411 (919)
.+......+++.+++.++..+.+.+.+...... -..+.+..|++.++|.+- |+..+-.
T Consensus 164 TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~--i~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 164 TIRSRTHHYPFRLLPPRTMRALIARICEQEGVV--VDDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred HHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 333333789999999999998887766443321 123456778899999874 4444433
No 110
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.08 E-value=0.0001 Score=74.09 Aligned_cols=176 Identities=20% Similarity=0.202 Sum_probs=103.9
Q ss_pred CCCccccccCHHHHHHHHhcC---CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 036584 202 EENPVGFEDDTDLLLAKLLDK---EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRII 278 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 278 (919)
-.+|||.++-++.+.=++... +...--|.++|++|.||||||.-+++ ....++. ++.+....-..-+..|+
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~--Emgvn~k----~tsGp~leK~gDlaaiL 98 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIAN--ELGVNLK----ITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHH--HhcCCeE----ecccccccChhhHHHHH
Confidence 357999988888877777653 34566899999999999999999999 4444432 11121111111122222
Q ss_pred HHhcccccccccccCCHHHHHHHHHHHhccCceEEEEecccchh-HHHHH-HhhCC--------CCCCCcEEE-------
Q 036584 279 KSFNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHKE-DWVSL-KSAFP--------ENKIGSRVI------- 341 (919)
Q Consensus 279 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-~~~~l-~~~l~--------~~~~gs~ii------- 341 (919)
..+ + +.=++++|.++... ..+++ .+.+- ..++++|.|
T Consensus 99 t~L-------------------------e-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppF 152 (332)
T COG2255 99 TNL-------------------------E-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPF 152 (332)
T ss_pred hcC-------------------------C-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCe
Confidence 222 1 23366778876432 11111 11111 223344332
Q ss_pred ----EEecchhhhhhcCCC-CceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHHHH
Q 036584 342 ----ITTRIKDVAERSDDR-NYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVLGG 411 (919)
Q Consensus 342 ----vTtr~~~v~~~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~~~ 411 (919)
-|||.-.+....... ..+..++..+.+|-.++..+.+..-.. +-..+.+.+|+++..|-|--..-+-+
T Consensus 153 TLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i--~i~~~~a~eIA~rSRGTPRIAnRLLr 225 (332)
T COG2255 153 TLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI--EIDEEAALEIARRSRGTPRIANRLLR 225 (332)
T ss_pred eEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC--CCChHHHHHHHHhccCCcHHHHHHHH
Confidence 478865544433221 157789999999999999988743322 23346788999999999965444433
No 111
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=8.5e-05 Score=85.33 Aligned_cols=198 Identities=14% Similarity=0.160 Sum_probs=114.5
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFN 282 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 282 (919)
.+++|-+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++...-..... ...+..-...+.|.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-------~~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-------GEPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhccccCCCC-------CCCCcccHHHHHHhcCCC
Confidence 467898888888888776642 246788999999999999999997421111000 111222222333322111
Q ss_pred ccccccccc---cCCHHHHHHHHHHHh-----ccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecc-hhhhh
Q 036584 283 IMTALEDLE---TKTEEDLARSLRKSL-----EAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRI-KDVAE 351 (919)
Q Consensus 283 ~~~~~~~~~---~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~ 351 (919)
. +...++ ....+++. .+.+.+ .+++-++|+|+++.. +.++.++..+..-.....+|++|.. ..+..
T Consensus 88 p--Dv~eId~a~~~~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~ 164 (624)
T PRK14959 88 V--DVVEIDGASNRGIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPV 164 (624)
T ss_pred C--ceEEEecccccCHHHHH-HHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhH
Confidence 0 000000 11122222 232222 355679999999754 4567787777554345556665544 44443
Q ss_pred hcCCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcc-hHHHHHHHHh
Q 036584 352 RSDDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLP-LAIVVLGGLL 413 (919)
Q Consensus 352 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~P-Lal~~~~~~l 413 (919)
.+......+++.+++.++....+.+.+...... -..+.+..|++.++|.+ .|+..+..++
T Consensus 165 TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~--id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 165 TIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD--YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 322223578999999999999888766543321 22356778899999965 5776665544
No 112
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.07 E-value=9.4e-05 Score=78.45 Aligned_cols=133 Identities=16% Similarity=0.091 Sum_probs=73.4
Q ss_pred EEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHHhc
Q 036584 228 VISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSLE 307 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 307 (919)
-+.++|++|+|||++|+.+++.....+.....-|+.++. .+ ++..+.+. +.......+.+ .
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~---------~~~~~~~~~~~-a- 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGH---------TAPKTKEILKR-A- 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhccc---------chHHHHHHHHH-c-
Confidence 688999999999999987765321111111112444442 11 22222211 11111222222 2
Q ss_pred cCceEEEEecccch-----------hHHHHHHhhCCCCCCCcEEEEEecchhhhhhcCC-------CCceEecCCCChHh
Q 036584 308 AYSYLMVIDDIWHK-----------EDWVSLKSAFPENKIGSRVIITTRIKDVAERSDD-------RNYVHELRFLRQDE 369 (919)
Q Consensus 308 ~~~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~-------~~~~~~l~~L~~~~ 369 (919)
..-+|+||++... +.++.+...+.....+.+||+++........... ....+.+++++.+|
T Consensus 121 -~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~ed 199 (284)
T TIGR02880 121 -MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAE 199 (284)
T ss_pred -cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHH
Confidence 2368999999632 2345566666555556677777654322211110 12578999999999
Q ss_pred HHHHHHHHhcc
Q 036584 370 SWQLFCERAFR 380 (919)
Q Consensus 370 ~~~lf~~~~~~ 380 (919)
-.+++.+.+-.
T Consensus 200 l~~I~~~~l~~ 210 (284)
T TIGR02880 200 LLVIAGLMLKE 210 (284)
T ss_pred HHHHHHHHHHH
Confidence 99999877643
No 113
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.06 E-value=3.6e-06 Score=66.29 Aligned_cols=57 Identities=25% Similarity=0.429 Sum_probs=47.5
Q ss_pred ceEEEEEeccCccccccccccchhhh-hhhcccccceEEeecCCCccccCh-hhhcCCCCcEEecCCC
Q 036584 611 FLLRVFDVEADLDRESTLMHWSNRLS-EKIGDLIHLKYLGLRNSNIGILPS-SIVKLQRLQTLDFSGD 676 (919)
Q Consensus 611 ~~LrvL~L~~~~~~~~~~i~~~~~lp-~~i~~L~~Lr~L~L~~~~i~~LP~-~l~~L~~L~~L~L~~~ 676 (919)
++|++|++++ |. +. .+| ..+..+++|++|++++|.++.+|+ .+..+++|++|++++|
T Consensus 1 p~L~~L~l~~-n~-----l~---~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSN-NK-----LT---EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETS-ST-----ES---EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCC-CC-----CC---ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3688899998 77 77 676 457889999999999999988775 6789999999999988
No 114
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=5e-05 Score=89.04 Aligned_cols=199 Identities=13% Similarity=0.060 Sum_probs=116.5
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFN 282 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 282 (919)
.++||.+..++.+..++..+. -...+.++|+.|+||||+|+.+++...-.... .....+......+.+.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~------~~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTND------PKGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCC------CCCCCCccCHHHHHHhcCCC
Confidence 578999999999988887653 24567899999999999999998742110000 00111222233444433221
Q ss_pred cccc-ccccccCCHHHHHHHHHHHh-----ccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecc-hhhhhhc
Q 036584 283 IMTA-LEDLETKTEEDLARSLRKSL-----EAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRI-KDVAERS 353 (919)
Q Consensus 283 ~~~~-~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~ 353 (919)
...- .........+++. .+.+.+ .+++-++|+|+++.. +..+.++.++......+.+|+++.+ ..+....
T Consensus 89 ~d~~~i~~~~~~~vd~ir-~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI 167 (585)
T PRK14950 89 VDVIEMDAASHTSVDDAR-EIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATI 167 (585)
T ss_pred CeEEEEeccccCCHHHHH-HHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHH
Confidence 1100 0000112223322 222222 245669999999744 4577777777665556666665543 3333322
Q ss_pred CCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHHHH
Q 036584 354 DDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVLGG 411 (919)
Q Consensus 354 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~~~ 411 (919)
......+.++.++.++....+.+.+...... -..+.+..|++.++|.+..+.....
T Consensus 168 ~SR~~~i~f~~l~~~el~~~L~~~a~~egl~--i~~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 168 LSRCQRFDFHRHSVADMAAHLRKIAAAEGIN--LEPGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred HhccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2233678899999999998888776543321 2235678899999999965544433
No 115
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.00013 Score=84.83 Aligned_cols=200 Identities=13% Similarity=0.077 Sum_probs=112.2
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEE-eCCCCCHHHHHHHHHHHh
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVS-VSQDYKIKDLLLRIIKSF 281 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~il~~l 281 (919)
.++||-+..+..+.+++..+. -...+.++|+.|+||||+|+.+++...-...++...|.. +..++..-...+.+...-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccC
Confidence 578999888888888887653 234688999999999999999987422111111011111 111122222233322211
Q ss_pred ccccccccc-ccCCHHHHHHHHHHH----hccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEe-cchhhhhhc
Q 036584 282 NIMTALEDL-ETKTEEDLARSLRKS----LEAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITT-RIKDVAERS 353 (919)
Q Consensus 282 ~~~~~~~~~-~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~~~ 353 (919)
..+...-+. .....+++...+... ..+.+-++|+|+++.. ...+.++.++..-...+.+|++| +...+...+
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI 174 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATI 174 (620)
T ss_pred CCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHH
Confidence 110000000 111133333322222 2345668999999754 45777888877655556655544 444443333
Q ss_pred CCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchH
Q 036584 354 DDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLA 405 (919)
Q Consensus 354 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLa 405 (919)
......+++.+++.++....+.+.+..... .-..+.+..|++.++|..--
T Consensus 175 ~SRc~~vef~~l~~~ei~~~L~~i~~~egi--~I~~eal~~La~~s~Gdlr~ 224 (620)
T PRK14954 175 ASRCQRFNFKRIPLDEIQSQLQMICRAEGI--QIDADALQLIARKAQGSMRD 224 (620)
T ss_pred HhhceEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHHH
Confidence 333378999999999988888776543221 12235677899999996653
No 116
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.01 E-value=0.00014 Score=84.88 Aligned_cols=190 Identities=13% Similarity=0.093 Sum_probs=108.7
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFN 282 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 282 (919)
.+++|.+..++.+..++..+. -...+.++|+.|+||||+|+.+++.. ...+.. .....-..+... .+
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~L-nC~~~~--------~~~~pC~~C~~~---~~ 84 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANAL-NCSHKT--------DLLEPCQECIEN---VN 84 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHh-cccccC--------CCCCchhHHHHh---hc
Confidence 468899888888999887753 34567899999999999999998631 111100 000000001100 00
Q ss_pred cccccccccc---CCHHHHHHHHHHHh-----ccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEE-Eecchhhhh
Q 036584 283 IMTALEDLET---KTEEDLARSLRKSL-----EAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVII-TTRIKDVAE 351 (919)
Q Consensus 283 ~~~~~~~~~~---~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv-Ttr~~~v~~ 351 (919)
.....-..+. ...++ ++.+.+.+ .+++-++|+|+++.. ..+..++..+-.......+|+ |+....+..
T Consensus 85 ~~~Dvieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~ 163 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPL 163 (725)
T ss_pred CCCcEEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhH
Confidence 0000000000 11222 22233322 356669999999744 467778777665444555554 444444443
Q ss_pred hcCCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHH
Q 036584 352 RSDDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVV 408 (919)
Q Consensus 352 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~ 408 (919)
........+++.+++.++....+...+...... ...+.+..|++.++|.+--+..
T Consensus 164 TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~--id~eAl~~LA~lS~GslR~Als 218 (725)
T PRK07133 164 TILSRVQRFNFRRISEDEIVSRLEFILEKENIS--YEKNALKLIAKLSSGSLRDALS 218 (725)
T ss_pred HHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 333333689999999999998888765433221 1234577899999997754433
No 117
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.00 E-value=7.6e-05 Score=83.02 Aligned_cols=173 Identities=18% Similarity=0.205 Sum_probs=99.1
Q ss_pred CCCccccccCHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCH
Q 036584 202 EENPVGFEDDTDLLLAKLLDK-----------EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKI 270 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 270 (919)
.+++.|+++.++++.+.+... -...+-|.++|++|+|||++|+.+++. .... |+.++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~---- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG---- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh----
Confidence 357889999999998877431 123567899999999999999999983 3333 233221
Q ss_pred HHHHHHHHHHhcccccccccccCCHHHHHHHHHHHh-ccCceEEEEecccch-------------hHHHHHHhh---CCC
Q 036584 271 KDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSL-EAYSYLMVIDDIWHK-------------EDWVSLKSA---FPE 333 (919)
Q Consensus 271 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~-------------~~~~~l~~~---l~~ 333 (919)
.++. ....+ . .....+.+.+.. ...+.+|+|||++.. +....+... +..
T Consensus 199 ~~l~----~~~~g---------~-~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~ 264 (389)
T PRK03992 199 SELV----QKFIG---------E-GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDG 264 (389)
T ss_pred HHHh----Hhhcc---------c-hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccc
Confidence 1111 11100 0 122233333333 346789999999753 111222222 222
Q ss_pred --CCCCcEEEEEecchhhhhh-c---CCCCceEecCCCChHhHHHHHHHHhccCCCCc-hhhHHHHHHHHHHcCCcc
Q 036584 334 --NKIGSRVIITTRIKDVAER-S---DDRNYVHELRFLRQDESWQLFCERAFRNSKAE-KGLENLGREMVQKCDGLP 403 (919)
Q Consensus 334 --~~~gs~iivTtr~~~v~~~-~---~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~-~~~~~~~~~I~~~~~G~P 403 (919)
...+..||.||...+.... . +.....+.+++.+.++..++|+.+........ .+ ...+++.+.|.-
T Consensus 265 ~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 265 FDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGAS 337 (389)
T ss_pred cCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCCC
Confidence 1235667777765432221 1 11225789999999999999988765432221 12 345666666654
No 118
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.99 E-value=6.1e-05 Score=82.03 Aligned_cols=147 Identities=18% Similarity=0.198 Sum_probs=85.6
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFN 282 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 282 (919)
++++|.++..+.+..++..+. -..++.++|++|+||||+|+.+++. .... ...++.+. .. .+.++..+..+.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~--~~~~---~~~i~~~~-~~-~~~i~~~l~~~~ 92 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNE--VGAE---VLFVNGSD-CR-IDFVRNRLTRFA 92 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHH--hCcc---ceEeccCc-cc-HHHHHHHHHHHH
Confidence 578999999999999887643 3467788999999999999999984 2222 23344443 11 111112111110
Q ss_pred ccccccccccCCHHHHHHHHHHHhccCceEEEEecccch---hHHHHHHhhCCCCCCCcEEEEEecchh-hhhhcCCCCc
Q 036584 283 IMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHK---EDWVSLKSAFPENKIGSRVIITTRIKD-VAERSDDRNY 358 (919)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~~~ 358 (919)
.. ..+.+.+-++|+||++.. +....+...+.....++++|+||.... +.........
T Consensus 93 ~~-------------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 93 ST-------------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred Hh-------------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce
Confidence 00 001234568999999754 223344444444455778888886432 1111112224
Q ss_pred eEecCCCChHhHHHHHHH
Q 036584 359 VHELRFLRQDESWQLFCE 376 (919)
Q Consensus 359 ~~~l~~L~~~~~~~lf~~ 376 (919)
.+.++..+.++..+++..
T Consensus 154 ~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEeCCCCHHHHHHHHHH
Confidence 667777777777766543
No 119
>CHL00181 cbbX CbbX; Provisional
Probab=97.98 E-value=0.00019 Score=76.10 Aligned_cols=134 Identities=18% Similarity=0.102 Sum_probs=74.1
Q ss_pred EEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHHh
Q 036584 227 LVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSL 306 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l 306 (919)
..+.++|++|+||||+|+.+++.....+.-...-|+.++. .++ ...+.+. ........+.+ .
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l----~~~~~g~---------~~~~~~~~l~~-a 121 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDL----VGQYIGH---------TAPKTKEVLKK-A 121 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHH----HHHHhcc---------chHHHHHHHHH-c
Confidence 4588999999999999999976321111111112454441 122 2222110 01111122222 2
Q ss_pred ccCceEEEEecccch-----------hHHHHHHhhCCCCCCCcEEEEEecchhhhhhc-------CCCCceEecCCCChH
Q 036584 307 EAYSYLMVIDDIWHK-----------EDWVSLKSAFPENKIGSRVIITTRIKDVAERS-------DDRNYVHELRFLRQD 368 (919)
Q Consensus 307 ~~~~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~-------~~~~~~~~l~~L~~~ 368 (919)
..-+|+||++... +..+.+...+.....+.+||+++....+.... .-....+.+++++.+
T Consensus 122 --~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~ 199 (287)
T CHL00181 122 --MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPE 199 (287)
T ss_pred --cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHH
Confidence 2359999999642 23344555555555567777777544332111 111257899999999
Q ss_pred hHHHHHHHHhcc
Q 036584 369 ESWQLFCERAFR 380 (919)
Q Consensus 369 ~~~~lf~~~~~~ 380 (919)
+..+++...+-.
T Consensus 200 el~~I~~~~l~~ 211 (287)
T CHL00181 200 ELLQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHHHH
Confidence 999998877644
No 120
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00024 Score=80.77 Aligned_cols=194 Identities=16% Similarity=0.099 Sum_probs=107.9
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCc-cCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDV-KNKFDYCAWVSVSQDYKIKDLLLRIIKSF 281 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~il~~l 281 (919)
.+++|.+..+..+.+++..+. -...+.++|+.|+||||+|+.++....- .... ..++..-.-...+-..-
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~--------~~pc~~c~nc~~i~~g~ 86 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQE--------GEPCGKCENCVEIDKGS 86 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCC--------CCCCCccHHHHHHhcCC
Confidence 468899998999988887753 2456778999999999999998873110 0000 00000000001100000
Q ss_pred ccccccccc---ccCCHHHHHHHHHHHh-----ccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEe-cchhhh
Q 036584 282 NIMTALEDL---ETKTEEDLARSLRKSL-----EAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITT-RIKDVA 350 (919)
Q Consensus 282 ~~~~~~~~~---~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt-r~~~v~ 350 (919)
..+.-.. .....++ ++.+.+.. .+++-++|+|+++.. +..+.+...+........+|++| +...+.
T Consensus 87 --~~d~~eidaas~~gvd~-ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~ 163 (486)
T PRK14953 87 --FPDLIEIDAASNRGIDD-IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIP 163 (486)
T ss_pred --CCcEEEEeCccCCCHHH-HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHH
Confidence 0000000 0011111 12222222 355679999999754 45677777776555455565555 433333
Q ss_pred hhcCCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHHH
Q 036584 351 ERSDDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVLG 410 (919)
Q Consensus 351 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~~ 410 (919)
.........+.+.+++.++....+.+.+-..... ...+.+..|++.++|.+..+....
T Consensus 164 ~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~--id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 164 PTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE--YEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred HHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2222223678999999999998888766433321 223556778899999876554443
No 121
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.97 E-value=0.00044 Score=71.72 Aligned_cols=193 Identities=17% Similarity=0.144 Sum_probs=114.4
Q ss_pred HHHHHHHHhcC-CCCcEEEEEEecCCchHHHHHHHHHcccCccC----CCCEEEEEEeCCCCCHHHHHHHHHHHhccccc
Q 036584 212 TDLLLAKLLDK-EQRRLVISIYGMGGLGKTTLARKLYHNNDVKN----KFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTA 286 (919)
Q Consensus 212 ~~~l~~~L~~~-~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~ 286 (919)
++++.+++..+ ..+.+-+.|||.+|.|||++++++.+..-... .--.++.|.+...++...+...|+.+++.+..
T Consensus 46 L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~ 125 (302)
T PF05621_consen 46 LDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYR 125 (302)
T ss_pred HHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccC
Confidence 45555555554 33557899999999999999999997422111 11257788888999999999999999987543
Q ss_pred ccccccCCHHHHHHHHHHHhcc-CceEEEEecccch--------hHHHHHHhhCCCCCCCcEEEEEecchhhhhhcC---
Q 036584 287 LEDLETKTEEDLARSLRKSLEA-YSYLMVIDDIWHK--------EDWVSLKSAFPENKIGSRVIITTRIKDVAERSD--- 354 (919)
Q Consensus 287 ~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~--------~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~--- 354 (919)
.......+.......++. +--+||+|++++. ...-....++.+.-.=+-|.+-|+..--+-...
T Consensus 126 ----~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QL 201 (302)
T PF05621_consen 126 ----PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQL 201 (302)
T ss_pred ----CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHH
Confidence 123344555555555543 3459999999864 122233344433333455556555332221111
Q ss_pred -CCCceEecCCCChHhHH-HHHHHHhc--cCCCC-chhhHHHHHHHHHHcCCcchHHHH
Q 036584 355 -DRNYVHELRFLRQDESW-QLFCERAF--RNSKA-EKGLENLGREMVQKCDGLPLAIVV 408 (919)
Q Consensus 355 -~~~~~~~l~~L~~~~~~-~lf~~~~~--~~~~~-~~~~~~~~~~I~~~~~G~PLal~~ 408 (919)
....++.++....++-+ .|+..... .-..+ .-...+++..|...++|+.=-+..
T Consensus 202 a~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ 260 (302)
T PF05621_consen 202 ASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSR 260 (302)
T ss_pred HhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHH
Confidence 11145666666655444 34422211 11111 223467889999999998754433
No 122
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.96 E-value=8.2e-05 Score=90.52 Aligned_cols=180 Identities=14% Similarity=0.093 Sum_probs=96.7
Q ss_pred CCCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccC---C-CCEEE-EEEeCCCCCHHHHHHH
Q 036584 202 EENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKN---K-FDYCA-WVSVSQDYKIKDLLLR 276 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~---~-f~~~~-wv~~~~~~~~~~~~~~ 276 (919)
-+.++||++++.+++..|.... ..-+.++|++|+||||+|+.+++...... . ....+ .+..+.-
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l--------- 254 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL--------- 254 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh---------
Confidence 3579999999999999987754 33556999999999999999997321111 1 12222 2333210
Q ss_pred HHHHhcccccccccccCCHHHHHHHHHHHh--ccCceEEEEecccchh---------HHH-HHHhhCCCCCCCcEEEEEe
Q 036584 277 IIKSFNIMTALEDLETKTEEDLARSLRKSL--EAYSYLMVIDDIWHKE---------DWV-SLKSAFPENKIGSRVIITT 344 (919)
Q Consensus 277 il~~l~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~---------~~~-~l~~~l~~~~~gs~iivTt 344 (919)
.. +. ... .........+.+.+ .+.+.+|++|+++... +-. -+++.+.++ .-++|-||
T Consensus 255 -~a---g~----~~~-ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--~l~~IgaT 323 (852)
T TIGR03345 255 -QA---GA----SVK-GEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--ELRTIAAT 323 (852)
T ss_pred -hc---cc----ccc-hHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--CeEEEEec
Confidence 00 00 000 00111112222222 2468999999987531 111 233433322 34566666
Q ss_pred cchhhhhhcC------CCCceEecCCCChHhHHHHHHHHhccCC--CCchhhHHHHHHHHHHcCCcc
Q 036584 345 RIKDVAERSD------DRNYVHELRFLRQDESWQLFCERAFRNS--KAEKGLENLGREMVQKCDGLP 403 (919)
Q Consensus 345 r~~~v~~~~~------~~~~~~~l~~L~~~~~~~lf~~~~~~~~--~~~~~~~~~~~~I~~~~~G~P 403 (919)
...+...... .....+.+++++.+++.+++....-.-. ....-..+....+++.+.+..
T Consensus 324 T~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 324 TWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred CHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 5433221111 1126899999999999999754432111 111222445566666665443
No 123
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.95 E-value=9.6e-06 Score=58.45 Aligned_cols=40 Identities=30% Similarity=0.445 Sum_probs=29.4
Q ss_pred ccceEEeecCCCccccChhhhcCCCCcEEecCCCCCcccccC
Q 036584 643 IHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVELP 684 (919)
Q Consensus 643 ~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~lp 684 (919)
++|++|+|++|+|+.+|..+++|++|++|++++| .+..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N--~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN--PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS--CCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC--CCCCCc
Confidence 4678888888888888877888888888888888 565544
No 124
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.91 E-value=0.00019 Score=75.21 Aligned_cols=170 Identities=18% Similarity=0.185 Sum_probs=109.6
Q ss_pred CCCCccccccCHHHHHHHHhcCCCCc-EEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 036584 201 VEENPVGFEDDTDLLLAKLLDKEQRR-LVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIK 279 (919)
Q Consensus 201 ~~~~~vGr~~~~~~l~~~L~~~~~~~-~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 279 (919)
.++.+.+|+.++..+..++...+... ..|.|+|-+|.|||.+.+++++.. ..+ .+|+++-+.++..-.+..|+.
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~~---~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--NLE---NVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc--CCc---ceeeehHHhccHHHHHHHHHH
Confidence 45688999999999999998876533 456999999999999999999853 223 689999999999999999999
Q ss_pred Hhcc-ccccccccc--CCHHHHHHHHHH--Hh--ccCceEEEEecccchhHHHHHH-hh---CC--CCCCCcEEEEEecc
Q 036584 280 SFNI-MTALEDLET--KTEEDLARSLRK--SL--EAYSYLMVIDDIWHKEDWVSLK-SA---FP--ENKIGSRVIITTRI 346 (919)
Q Consensus 280 ~l~~-~~~~~~~~~--~~~~~~~~~l~~--~l--~~~~~LlVlDdv~~~~~~~~l~-~~---l~--~~~~gs~iivTtr~ 346 (919)
+... ..+....+. .+..+.+..+.+ .. +++.++||||+++...+.+.+. .. ++ -..+.. +|+++-.
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i-~iils~~ 157 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTI-VIILSAP 157 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCce-EEEEecc
Confidence 9852 211111111 233444555555 22 2458999999998765544321 11 11 112233 3333332
Q ss_pred hhhhhh---cCCC-CceEecCCCChHhHHHHHHH
Q 036584 347 KDVAER---SDDR-NYVHELRFLRQDESWQLFCE 376 (919)
Q Consensus 347 ~~v~~~---~~~~-~~~~~l~~L~~~~~~~lf~~ 376 (919)
.-.... ++.. ..++..+.-+.+|...++.+
T Consensus 158 ~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 158 SCEKQYLINTGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred ccHHHhhcccCCCCceEEecCCCCHHHHHHHHhc
Confidence 211111 2222 14666788899999988854
No 125
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.91 E-value=0.00029 Score=79.59 Aligned_cols=194 Identities=14% Similarity=0.122 Sum_probs=106.2
Q ss_pred CCCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 036584 202 EENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSF 281 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 281 (919)
-++++|.+..++.+.+++..+. -...+.++|++|+||||+|+.+++...-...-. -...+..-...+.+...-
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~------~~~~c~~c~~C~~i~~~~ 88 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTE------DQEPCNQCASCKEISSGT 88 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCccc------CCCCCcccHHHHHHhcCC
Confidence 3578999999999888887653 235788999999999999999987321110000 000000000000000000
Q ss_pred cccc-cccccccCCHHHHHHHHHHHh-----ccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecc-hhhhhh
Q 036584 282 NIMT-ALEDLETKTEEDLARSLRKSL-----EAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRI-KDVAER 352 (919)
Q Consensus 282 ~~~~-~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~ 352 (919)
.... ..........+++. .+.+.+ .+.+-++|+|+++.. +..+.+..++........+|++|.. ..+...
T Consensus 89 ~~d~~~i~g~~~~gid~ir-~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~t 167 (451)
T PRK06305 89 SLDVLEIDGASHRGIEDIR-QINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGT 167 (451)
T ss_pred CCceEEeeccccCCHHHHH-HHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchH
Confidence 0000 00000000111211 112211 356678999999744 4566777777665456666666533 333322
Q ss_pred cCCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchH
Q 036584 353 SDDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLA 405 (919)
Q Consensus 353 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLa 405 (919)
+......+++.+++.++....+.+.+-.... .-..+.+..|++.++|.+--
T Consensus 168 I~sRc~~v~f~~l~~~el~~~L~~~~~~eg~--~i~~~al~~L~~~s~gdlr~ 218 (451)
T PRK06305 168 ILSRCQKMHLKRIPEETIIDKLALIAKQEGI--ETSREALLPIARAAQGSLRD 218 (451)
T ss_pred HHHhceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 2222367899999999999888776543221 12245678899999997643
No 126
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.88 E-value=4.9e-05 Score=81.90 Aligned_cols=95 Identities=14% Similarity=0.040 Sum_probs=61.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCC--CCHHHHHHHHHHHhcccccc-cccccCCH-HHHHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQD--YKIKDLLLRIIKSFNIMTAL-EDLETKTE-EDLARS 301 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~~-~~~~~~~~-~~~~~~ 301 (919)
-+.++|+|++|+|||||++.+++... ..+|+..+||.+... .++.++++.++..+-...-. +....... ..+.+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAIT-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhc-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 46889999999999999999998533 337999999998866 68888888885433221110 00000000 111222
Q ss_pred HHHH-hccCceEEEEecccch
Q 036584 302 LRKS-LEAYSYLMVIDDIWHK 321 (919)
Q Consensus 302 l~~~-l~~~~~LlVlDdv~~~ 321 (919)
.... -.+++.+|++|++...
T Consensus 247 Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHcCCCeEEEEEChhHH
Confidence 2222 2689999999999643
No 127
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00033 Score=82.03 Aligned_cols=175 Identities=15% Similarity=0.144 Sum_probs=110.4
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCc---------------------cCCCCEEEE
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDV---------------------KNKFDYCAW 261 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~---------------------~~~f~~~~w 261 (919)
++++|.+..++.+..++..+. -...+.++|+.|+||||+|+.+.....- ..+|+. ..
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~ 94 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HE 94 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EE
Confidence 578999999999999987753 3456889999999999999988874210 012221 11
Q ss_pred EEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHH----hccCceEEEEecccch--hHHHHHHhhCCCCC
Q 036584 262 VSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKS----LEAYSYLMVIDDIWHK--EDWVSLKSAFPENK 335 (919)
Q Consensus 262 v~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~ 335 (919)
+..+.. ...+++...+.+. ..+++-++|+|+++.. +.++.++..+..-.
T Consensus 95 ld~~~~-------------------------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp 149 (614)
T PRK14971 95 LDAASN-------------------------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP 149 (614)
T ss_pred eccccc-------------------------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCC
Confidence 211111 1122222222111 1244568999999754 46778888877655
Q ss_pred CCcEEEEEe-cchhhhhhcCCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHH
Q 036584 336 IGSRVIITT-RIKDVAERSDDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAI 406 (919)
Q Consensus 336 ~gs~iivTt-r~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal 406 (919)
.++.+|++| ....+...+......+++.+++.++....+.+.+...... ...+.+..|++.++|..--+
T Consensus 150 ~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~--i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 150 SYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT--AEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred CCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 566666544 4444444333334789999999999999888766443321 22346788999999977544
No 128
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.86 E-value=0.00012 Score=88.51 Aligned_cols=155 Identities=15% Similarity=0.187 Sum_probs=87.4
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccC---ccCCC-CEEEEEEeCCCCCHHHHHHHHH
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNND---VKNKF-DYCAWVSVSQDYKIKDLLLRII 278 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~---~~~~f-~~~~wv~~~~~~~~~~~~~~il 278 (919)
+.++||++++++++..|.... ..-+.++|++|+|||++|+.+++... +...+ +..+|. ++ .. .++
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~~----~~----~l~ 250 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-LD----MG----SLL 250 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-ec----HH----HHh
Confidence 479999999999999887754 33467999999999999999987421 11111 233332 11 11 111
Q ss_pred HHhcccccccccccCCHHHHHHHHHHHh-ccCceEEEEecccch-----------hHHHHHHhhCCCCCCCcEEEEEecc
Q 036584 279 KSFNIMTALEDLETKTEEDLARSLRKSL-EAYSYLMVIDDIWHK-----------EDWVSLKSAFPENKIGSRVIITTRI 346 (919)
Q Consensus 279 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~iivTtr~ 346 (919)
.... .. .+.++....+.+.+ ..++.+|++|+++.. +.-+.++..+.++ .-++|-+|..
T Consensus 251 a~~~-------~~-g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--~i~~IgaTt~ 320 (731)
T TIGR02639 251 AGTK-------YR-GDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--KLRCIGSTTY 320 (731)
T ss_pred hhcc-------cc-chHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--CeEEEEecCH
Confidence 1000 00 11222333333333 345789999999733 1123344444322 2345555543
Q ss_pred hhhhhh------cCCCCceEecCCCChHhHHHHHHHHh
Q 036584 347 KDVAER------SDDRNYVHELRFLRQDESWQLFCERA 378 (919)
Q Consensus 347 ~~v~~~------~~~~~~~~~l~~L~~~~~~~lf~~~~ 378 (919)
.+.... .......+.++.++.++..++++...
T Consensus 321 ~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 321 EEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 222111 11112578999999999999998654
No 129
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.86 E-value=0.00031 Score=75.54 Aligned_cols=177 Identities=15% Similarity=0.126 Sum_probs=114.3
Q ss_pred CCCCccccccCHHHHHHHHhcC--CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 036584 201 VEENPVGFEDDTDLLLAKLLDK--EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRII 278 (919)
Q Consensus 201 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 278 (919)
.+..++||+.+++.+.+|+... .+....+.|.|-+|.|||.+...++.+..-...=-+++++....-.....++..|.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 4678999999999999999874 34567899999999999999999998633322223567887777677788888888
Q ss_pred HHhcccccccccccCCHHHHHHHHHHHhcc--CceEEEEecccchhH--HHHHHhhCCC-CCCCcEEEEEecch--hhh-
Q 036584 279 KSFNIMTALEDLETKTEEDLARSLRKSLEA--YSYLMVIDDIWHKED--WVSLKSAFPE-NKIGSRVIITTRIK--DVA- 350 (919)
Q Consensus 279 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~LlVlDdv~~~~~--~~~l~~~l~~-~~~gs~iivTtr~~--~v~- 350 (919)
..+......+ ....+..+.+.++..+ ..+|+|+|.++.... -..+...|.. .-+++++|+..-.. +..
T Consensus 228 ~~~~q~~~s~----~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTd 303 (529)
T KOG2227|consen 228 SSLLQDLVSP----GTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTD 303 (529)
T ss_pred HHHHHHhcCC----chhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHH
Confidence 8873322111 1124556666666643 368999999864321 1112222221 22466666543211 111
Q ss_pred ----h--h-cCCCCceEecCCCChHhHHHHHHHHhccC
Q 036584 351 ----E--R-SDDRNYVHELRFLRQDESWQLFCERAFRN 381 (919)
Q Consensus 351 ----~--~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~ 381 (919)
. . ..-....+..+|.+.++-.++|..+.-..
T Consensus 304 R~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~ 341 (529)
T KOG2227|consen 304 RFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEE 341 (529)
T ss_pred HHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcc
Confidence 1 1 11122678889999999999999887543
No 130
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=0.00048 Score=78.30 Aligned_cols=197 Identities=13% Similarity=0.080 Sum_probs=111.5
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFN 282 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 282 (919)
++++|-+...+.+...+..+. -..+..++|+.|+||||+|+.+++..- ...... ..++..-...+.+.....
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~-c~~~~~------~~pC~~C~~C~~~~~~~h 85 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALV-CEQGPS------STPCDTCIQCQSALENRH 85 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhc-CCCCCC------CCCCcccHHHHHHhhcCC
Confidence 468998888888888887653 345678999999999999998876311 100000 000000111111111100
Q ss_pred cccc-ccccccCCHHHHHHHHHHH----hccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecch-hhhhhcC
Q 036584 283 IMTA-LEDLETKTEEDLARSLRKS----LEAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRIK-DVAERSD 354 (919)
Q Consensus 283 ~~~~-~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~ 354 (919)
...- .........+++...+... ..+++-++|+|+++.. +..+.++..+-.-...+++|++|.+. .+.....
T Consensus 86 ~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~ 165 (535)
T PRK08451 86 IDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATIL 165 (535)
T ss_pred CeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHH
Confidence 0000 0000001123333333221 1244568999999754 45677777776555567777776553 2222222
Q ss_pred CCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHH
Q 036584 355 DRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVL 409 (919)
Q Consensus 355 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~ 409 (919)
.....+++.+++.++....+.+.+...+.. -..+.+..|++.++|.+.-+...
T Consensus 166 SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~--i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 166 SRTQHFRFKQIPQNSIISHLKTILEKEGVS--YEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred hhceeEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHHH
Confidence 233789999999999999887766443322 22456788999999999555444
No 131
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.85 E-value=0.0004 Score=78.44 Aligned_cols=158 Identities=16% Similarity=0.144 Sum_probs=93.8
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCC-C-CEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNK-F-DYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLR 303 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-f-~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 303 (919)
...+.|+|++|+|||+|++.+++. .... . ..++|++. .+++.++...+... ..+ .+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~---------~~~----~f~ 188 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG---------KLN----EFR 188 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc---------cHH----HHH
Confidence 456999999999999999999984 3222 2 24667654 34555555544321 111 233
Q ss_pred HHhccCceEEEEecccch---hHH-HHHHhhCCC-CCCCcEEEEEec-chhhh--------hhcCCCCceEecCCCChHh
Q 036584 304 KSLEAYSYLMVIDDIWHK---EDW-VSLKSAFPE-NKIGSRVIITTR-IKDVA--------ERSDDRNYVHELRFLRQDE 369 (919)
Q Consensus 304 ~~l~~~~~LlVlDdv~~~---~~~-~~l~~~l~~-~~~gs~iivTtr-~~~v~--------~~~~~~~~~~~l~~L~~~~ 369 (919)
+..+.+.-+|++||+... ..+ +.+...+.. ...|..||+||. ...-. ..+... ..+.+++.+.+.
T Consensus 189 ~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~g-l~v~i~~pd~e~ 267 (440)
T PRK14088 189 EKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMG-LVAKLEPPDEET 267 (440)
T ss_pred HHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcC-ceEeeCCCCHHH
Confidence 333344668999999743 112 223222211 122456888874 32211 112222 578899999999
Q ss_pred HHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHH
Q 036584 370 SWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIV 407 (919)
Q Consensus 370 ~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~ 407 (919)
-.+++++.+...... --++++..|++.+.|..-.+.
T Consensus 268 r~~IL~~~~~~~~~~--l~~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 268 RKKIARKMLEIEHGE--LPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHHHHHHhcCCC--CCHHHHHHHHhccccCHHHHH
Confidence 999999887543222 224677888888887755543
No 132
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.84 E-value=0.00015 Score=81.86 Aligned_cols=161 Identities=12% Similarity=0.154 Sum_probs=91.1
Q ss_pred CCccccccCHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHHcccCccCC-----CCEEEEEEeCC
Q 036584 203 ENPVGFEDDTDLLLAKLLDK-----------EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNK-----FDYCAWVSVSQ 266 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-----f~~~~wv~~~~ 266 (919)
.++.|.+..++++.+.+... -...+-+.++|++|+|||++|+.+++. ...+ +....|+.+..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEeccc
Confidence 45788999999988876431 123456899999999999999999984 3222 22344555442
Q ss_pred CCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHHh-ccCceEEEEecccch---------hH-----HHHHHhhC
Q 036584 267 DYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSL-EAYSYLMVIDDIWHK---------ED-----WVSLKSAF 331 (919)
Q Consensus 267 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~---------~~-----~~~l~~~l 331 (919)
. ++ +....+ . .......+....++.. .+++++|+||+++.. .+ ...++..+
T Consensus 260 ~----eL----l~kyvG-----e-te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 260 P----EL----LNKYVG-----E-TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred h----hh----cccccc-----h-HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 1 11 111100 0 0000111222222221 357899999999742 11 23444444
Q ss_pred CCCC--CCcEEEEEecchhhhhhc--C--CCCceEecCCCChHhHHHHHHHHhc
Q 036584 332 PENK--IGSRVIITTRIKDVAERS--D--DRNYVHELRFLRQDESWQLFCERAF 379 (919)
Q Consensus 332 ~~~~--~gs~iivTtr~~~v~~~~--~--~~~~~~~l~~L~~~~~~~lf~~~~~ 379 (919)
.... .+..||.||...+..... . -....+.++..+.++..++|..+..
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 4322 344455566544332211 1 1125689999999999999988763
No 133
>PRK06620 hypothetical protein; Validated
Probab=97.82 E-value=0.00021 Score=72.24 Aligned_cols=135 Identities=14% Similarity=0.058 Sum_probs=78.8
Q ss_pred EEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHHh
Q 036584 227 LVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSL 306 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l 306 (919)
+.+.|+|++|+|||+|++.+++.. .. .++. ..+. . + +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~--~~-----~~~~--~~~~------------------------~-~-------~~~ 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS--NA-----YIIK--DIFF------------------------N-E-------EIL 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc--CC-----EEcc--hhhh------------------------c-h-------hHH
Confidence 578999999999999999988742 11 1211 0000 0 0 011
Q ss_pred ccCceEEEEecccchhH--HHHHHhhCCCCCCCcEEEEEecchhh-------hhhcCCCCceEecCCCChHhHHHHHHHH
Q 036584 307 EAYSYLMVIDDIWHKED--WVSLKSAFPENKIGSRVIITTRIKDV-------AERSDDRNYVHELRFLRQDESWQLFCER 377 (919)
Q Consensus 307 ~~~~~LlVlDdv~~~~~--~~~l~~~l~~~~~gs~iivTtr~~~v-------~~~~~~~~~~~~l~~L~~~~~~~lf~~~ 377 (919)
+ ..-++++||++..++ .-.+...+. ..|..+|+|++.... ...+... .++++++++.++-..++++.
T Consensus 84 ~-~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~g-l~~~l~~pd~~~~~~~l~k~ 159 (214)
T PRK06620 84 E-KYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSV-LSILLNSPDDELIKILIFKH 159 (214)
T ss_pred h-cCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCC-ceEeeCCCCHHHHHHHHHHH
Confidence 1 234788999974322 112222222 236688998874432 2222222 48999999999988888877
Q ss_pred hccCCCCchhhHHHHHHHHHHcCCcchHHHH
Q 036584 378 AFRNSKAEKGLENLGREMVQKCDGLPLAIVV 408 (919)
Q Consensus 378 ~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~ 408 (919)
+..... .--+++..-|++.+.|.--.+.-
T Consensus 160 ~~~~~l--~l~~ev~~~L~~~~~~d~r~l~~ 188 (214)
T PRK06620 160 FSISSV--TISRQIIDFLLVNLPREYSKIIE 188 (214)
T ss_pred HHHcCC--CCCHHHHHHHHHHccCCHHHHHH
Confidence 653221 22245677777777776555433
No 134
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.82 E-value=2.4e-06 Score=96.57 Aligned_cols=172 Identities=24% Similarity=0.371 Sum_probs=84.4
Q ss_pred hccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccChhhhcCCCCcEEecCCCCCcccccCcc
Q 036584 607 FERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVELPIE 686 (919)
Q Consensus 607 ~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~~ 686 (919)
+..++.|..|++.. +. +. .+...+..+++|++|+|++|.|+.+. .+..|..|+.|++++| .+..++
T Consensus 91 l~~~~~l~~l~l~~-n~-----i~---~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N--~i~~~~-- 156 (414)
T KOG0531|consen 91 LSKLKSLEALDLYD-NK-----IE---KIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGN--LISDIS-- 156 (414)
T ss_pred cccccceeeeeccc-cc-----hh---hcccchhhhhcchheecccccccccc-chhhccchhhheeccC--cchhcc--
Confidence 44555555555555 44 44 33322555555555555555555553 3555555555555555 333332
Q ss_pred ccccccccccccccccccCCCCcCcCcccccccccccchhh--ccCCCCCCeEEeeecCccccccccchhhHHhhcCCCc
Q 036584 687 INMMQELRHLIGNFKGTLPIENLTNLQTLKYVQSKSWNKVN--TAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLR 764 (919)
Q Consensus 687 i~~L~~L~~L~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~--l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~ 764 (919)
++..+++|+.+++..+....... +..+.+++.+.+..+... .. ..+..+..+.
T Consensus 157 ------------------~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~----~i---~~~~~~~~l~ 211 (414)
T KOG0531|consen 157 ------------------GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR----EI---EGLDLLKKLV 211 (414)
T ss_pred ------------------CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh----cc---cchHHHHHHH
Confidence 23345555555555555433444 466666666666665422 11 1222222222
Q ss_pred EEEEeecCCCCccCcCCCCCCCC--ceeEEEceec-CCCCcchhccCCCcceEEEEccCC
Q 036584 765 FLSVKLLDANSFASLQPLSHCQC--LVDLRLSGRM-KKLPEDMHVFLPNLECLSLSVPYP 821 (919)
Q Consensus 765 ~L~l~~~~~~~~~~~~~l~~~~~--L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l 821 (919)
.+++ ..+.+..+.++...+. |+.+++.++. ...+..+..+ .++..|++.++.+
T Consensus 212 ~~~l---~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~-~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 212 LLSL---LDNKISKLEGLNELVMLHLRELYLSGNRISRSPEGLENL-KNLPVLDLSSNRI 267 (414)
T ss_pred Hhhc---ccccceeccCcccchhHHHHHHhcccCcccccccccccc-ccccccchhhccc
Confidence 2232 2333333333333333 6777776654 2333344444 6666777766655
No 135
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.81 E-value=0.00013 Score=67.83 Aligned_cols=21 Identities=52% Similarity=0.596 Sum_probs=19.6
Q ss_pred EEEEecCCchHHHHHHHHHcc
Q 036584 229 ISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 229 v~I~G~~GiGKTtLa~~v~~~ 249 (919)
|.|+|++|+||||+|+.++++
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999999985
No 136
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.80 E-value=0.0003 Score=78.19 Aligned_cols=241 Identities=19% Similarity=0.147 Sum_probs=130.3
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccc
Q 036584 212 TDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLE 291 (919)
Q Consensus 212 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~ 291 (919)
..++.+.+.... .++.|+|+-++||||+++.+... .... .+++..-+......-+.+..
T Consensus 26 ~~~l~~~~~~~~---~i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d~~------------- 84 (398)
T COG1373 26 LPRLIKKLDLRP---FIILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLDLL------------- 84 (398)
T ss_pred hHHHHhhcccCC---cEEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHHHH-------------
Confidence 344444444332 29999999999999999777763 2222 45554432211111111111
Q ss_pred cCCHHHHHHHHHHHhccCceEEEEecccchhHHHHHHhhCCCCCCCcEEEEEecchh-----hhhhcCCCCceEecCCCC
Q 036584 292 TKTEEDLARSLRKSLEAYSYLMVIDDIWHKEDWVSLKSAFPENKIGSRVIITTRIKD-----VAERSDDRNYVHELRFLR 366 (919)
Q Consensus 292 ~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-----v~~~~~~~~~~~~l~~L~ 366 (919)
..+.+.-..++..|+||.|....+|......+.+.++. +|++|+-+.. .+....+....+.+.|||
T Consensus 85 --------~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlS 155 (398)
T COG1373 85 --------RAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLS 155 (398)
T ss_pred --------HHHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCC
Confidence 11111111267899999999999999998888877666 8888887653 334444445789999999
Q ss_pred hHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhhcCCchhhHHHHHhc
Q 036584 367 QDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVLGGLLSTKRPQEWREVRNHIWRHLRNDSIQVSYLLDLS 446 (919)
Q Consensus 367 ~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~~~~l~~~~~~~w~~~~~~~~~~l~~~~~~i~~~l~~s 446 (919)
..|...+-...+ ..... ...-+-.-.+||.|-++..-...-. ..+....+. ..+ +....
T Consensus 156 F~Efl~~~~~~~-----~~~~~-~~~f~~Yl~~GGfP~~v~~~~~~~~--~~~~~~~~~---~~D----------i~~~~ 214 (398)
T COG1373 156 FREFLKLKGEEI-----EPSKL-ELLFEKYLETGGFPESVKADLSEKK--LKEYLDTIL---KRD----------IIERG 214 (398)
T ss_pred HHHHHhhccccc-----chhHH-HHHHHHHHHhCCCcHHHhCcchhhH--HHHHHHHHH---HHH----------HHHHc
Confidence 999887543000 01111 1122333457999987655322111 000111111 111 11111
Q ss_pred cccchHHHHHHHhHhcCCCCCceecHHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHcccccccc
Q 036584 447 FNDLSHQLKLCFLYLSLFPEDFVINVEKLIRLLVAEGFIRQDEDRTMEEVAKDILDELINRSLIQVEK 514 (919)
Q Consensus 447 y~~L~~~~k~c~~~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~ 514 (919)
-..=+..+++.+.+++.... ..+....+.+.+- .....+...|++.|.+.-++....
T Consensus 215 ~~~~~~~~k~i~~~l~~~~g-~~~s~~~la~~l~----------~is~~Ti~~Yl~~le~~fll~~~~ 271 (398)
T COG1373 215 KIENADLMKRILRFLASNIG-SPISYSSLARELK----------GISKDTIRKYLSYLEDAFLLFLVP 271 (398)
T ss_pred CcccHHHHHHHHHHHHhhcC-CccCHHHHHHHHh----------ccchHHHHHHHHHHHHhhheEEec
Confidence 10011344555555554432 3456666666552 112566778888888877776433
No 137
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.79 E-value=0.00028 Score=80.55 Aligned_cols=158 Identities=14% Similarity=0.156 Sum_probs=93.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcccCccCCC--CEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHH
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHNNDVKNKF--DYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSL 302 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l 302 (919)
....+.|+|++|+|||+|++.+++. ...++ ..+++++.. ++...+...+.. ... ..+
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~~------~~~~~~~~~~~~---------~~~----~~~ 205 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTSE------KFTNDFVNALRN---------NTM----EEF 205 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEHH------HHHHHHHHHHHc---------CcH----HHH
Confidence 3467899999999999999999984 33332 345566553 233334333321 111 223
Q ss_pred HHHhccCceEEEEecccch---hHH-HHHHhhCCC-CCCCcEEEEEecchh---------hhhhcCCCCceEecCCCChH
Q 036584 303 RKSLEAYSYLMVIDDIWHK---EDW-VSLKSAFPE-NKIGSRVIITTRIKD---------VAERSDDRNYVHELRFLRQD 368 (919)
Q Consensus 303 ~~~l~~~~~LlVlDdv~~~---~~~-~~l~~~l~~-~~~gs~iivTtr~~~---------v~~~~~~~~~~~~l~~L~~~ 368 (919)
.+.++ +.-+|||||++.. +.+ +.+...+.. ...|..+|+|+.... +...+... ..+++++.+.+
T Consensus 206 ~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g-l~v~i~~pd~~ 283 (450)
T PRK00149 206 KEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWG-LTVDIEPPDLE 283 (450)
T ss_pred HHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCC-eeEEecCCCHH
Confidence 33343 2448999999643 112 223222211 112455777776432 12222222 57999999999
Q ss_pred hHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHH
Q 036584 369 ESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIV 407 (919)
Q Consensus 369 ~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~ 407 (919)
+-.+++.+.+..... .--++++..|++.+.|..-.+.
T Consensus 284 ~r~~il~~~~~~~~~--~l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 284 TRIAILKKKAEEEGI--DLPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHHHHHHHcCC--CCCHHHHHHHHcCcCCCHHHHH
Confidence 999999998764322 2234577888999888876543
No 138
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.78 E-value=0.00083 Score=72.49 Aligned_cols=171 Identities=13% Similarity=0.043 Sum_probs=94.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccccc--ccc--cccCCHHHHHH
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTA--LED--LETKTEEDLAR 300 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~--~~~--~~~~~~~~~~~ 300 (919)
-...+.++|+.|+||||+|+.+++..--...-. ..++..-...+.+...-..... .++ ......+++.+
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~ 93 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQG-------GGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRE 93 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCC-------CCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHH
Confidence 355788999999999999999887421111000 0011111111111111000000 000 01122333333
Q ss_pred HHHHHh-----ccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecch-hhhhhcCCCCceEecCCCChHhHHH
Q 036584 301 SLRKSL-----EAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRIK-DVAERSDDRNYVHELRFLRQDESWQ 372 (919)
Q Consensus 301 ~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~~~~~l~~L~~~~~~~ 372 (919)
+.+.+ .+++-++|+|+++.. +..+.++..+-.-..++.+|++|.+. .+...+.+....+.+.+++.+++.+
T Consensus 94 -l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~ 172 (328)
T PRK05707 94 -LVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQ 172 (328)
T ss_pred -HHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHH
Confidence 33332 244556788999854 56777777776655567777777665 3333333334689999999999999
Q ss_pred HHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHH
Q 036584 373 LFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVL 409 (919)
Q Consensus 373 lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~ 409 (919)
.+...... . ..+.+..++..++|.|+.+..+
T Consensus 173 ~L~~~~~~--~----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 173 WLQQALPE--S----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHHhccc--C----ChHHHHHHHHHcCCCHHHHHHH
Confidence 98765311 1 1233556788999999765544
No 139
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.77 E-value=0.00053 Score=77.28 Aligned_cols=160 Identities=15% Similarity=0.145 Sum_probs=91.9
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKS 305 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 305 (919)
...+.|+|++|+|||+|++.+++.......=..+++++.. ++...+...+... ..+. +.+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~------~~~~~~~~~~~~~---------~~~~----~~~~ 196 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE------KFTNDFVNALRNN---------KMEE----FKEK 196 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH------HHHHHHHHHHHcC---------CHHH----HHHH
Confidence 4578999999999999999999842211111345666543 3344444443211 1122 2333
Q ss_pred hccCceEEEEecccchh---HH-HHHHhhCCC-CCCCcEEEEEecch-h--------hhhhcCCCCceEecCCCChHhHH
Q 036584 306 LEAYSYLMVIDDIWHKE---DW-VSLKSAFPE-NKIGSRVIITTRIK-D--------VAERSDDRNYVHELRFLRQDESW 371 (919)
Q Consensus 306 l~~~~~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gs~iivTtr~~-~--------v~~~~~~~~~~~~l~~L~~~~~~ 371 (919)
+++ .-+|||||++... .+ +.+...+.. ...+..+|+|+... . +...+... ..+.+++.+.++-.
T Consensus 197 ~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g-~~v~i~~pd~~~r~ 274 (405)
T TIGR00362 197 YRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWG-LVVDIEPPDLETRL 274 (405)
T ss_pred HHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCC-eEEEeCCCCHHHHH
Confidence 332 3489999997431 11 223222221 12345677877542 1 11122111 47899999999999
Q ss_pred HHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHH
Q 036584 372 QLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVV 408 (919)
Q Consensus 372 ~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~ 408 (919)
+++.+.+...... --+++...|++.+.|.+-.+.-
T Consensus 275 ~il~~~~~~~~~~--l~~e~l~~ia~~~~~~~r~l~~ 309 (405)
T TIGR00362 275 AILQKKAEEEGLE--LPDEVLEFIAKNIRSNVRELEG 309 (405)
T ss_pred HHHHHHHHHcCCC--CCHHHHHHHHHhcCCCHHHHHH
Confidence 9999887653322 2246677788888887765433
No 140
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.00045 Score=80.87 Aligned_cols=200 Identities=17% Similarity=0.070 Sum_probs=114.3
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFN 282 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 282 (919)
.+++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+++... ....+.. ....+..-..++.+.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~-c~~~~~~----~~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLN-CLNSDKP----TPEPCGKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhc-CCCcCCC----CCCCCcccHHHHHHhcCCC
Confidence 468899888899988888753 235678999999999999999987421 1111100 0011222233333333222
Q ss_pred cccc-ccccccCCHHHHHHHHHHHh-----ccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecch-hhhhhc
Q 036584 283 IMTA-LEDLETKTEEDLARSLRKSL-----EAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRIK-DVAERS 353 (919)
Q Consensus 283 ~~~~-~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~ 353 (919)
...- .........+++.+.+ +.+ .+++-++|+|+++.. +.++.++..+..-.....+|++|.+. .+...+
T Consensus 90 ~D~~ei~~~~~~~vd~IReii-~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 90 LDVIEIDAASNTGVDNIRELI-ERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTI 168 (620)
T ss_pred ccEEEEeccccCCHHHHHHHH-HHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHH
Confidence 1000 0000111222332222 222 245568999999854 46778887777544456566555433 333222
Q ss_pred CCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHHHH
Q 036584 354 DDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVLGG 411 (919)
Q Consensus 354 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~~~ 411 (919)
......+.+..++.++....+.+.+...... -..+.+..|++.++|.+..+.....
T Consensus 169 rSRc~~~~f~~l~~~ei~~~L~~ia~kegi~--is~~al~~La~~s~G~lr~A~~lLe 224 (620)
T PRK14948 169 ISRCQRFDFRRIPLEAMVQHLSEIAEKESIE--IEPEALTLVAQRSQGGLRDAESLLD 224 (620)
T ss_pred HhheeEEEecCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2333678889999999888887665432221 1134578899999998865544433
No 141
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.76 E-value=0.00017 Score=80.29 Aligned_cols=172 Identities=18% Similarity=0.191 Sum_probs=96.8
Q ss_pred CCccccccCHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHH
Q 036584 203 ENPVGFEDDTDLLLAKLLDK-----------EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIK 271 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 271 (919)
.++.|.+..++++.+.+... -...+-|.|+|++|+|||++|+.+++ .....| +.+..++
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f---i~V~~se----- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF---LRVVGSE----- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE---EEEecch-----
Confidence 45788999888888877421 12345788999999999999999998 344444 2222111
Q ss_pred HHHHHHHHHhcccccccccccCCHHHHHHHHHH-HhccCceEEEEecccchh----------------HHHHHHhhCCC-
Q 036584 272 DLLLRIIKSFNIMTALEDLETKTEEDLARSLRK-SLEAYSYLMVIDDIWHKE----------------DWVSLKSAFPE- 333 (919)
Q Consensus 272 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~----------------~~~~l~~~l~~- 333 (919)
+. ....+ .. ...+..+.+ ...+.+.+|+||+++... ....+...+..
T Consensus 253 -L~----~k~~G---------e~-~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~ 317 (438)
T PTZ00361 253 -LI----QKYLG---------DG-PKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGF 317 (438)
T ss_pred -hh----hhhcc---------hH-HHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhh
Confidence 11 11100 01 122222322 234578899999985320 11222223322
Q ss_pred -CCCCcEEEEEecchhhhhhc----CCCCceEecCCCChHhHHHHHHHHhccCCCC-chhhHHHHHHHHHHcCCcc
Q 036584 334 -NKIGSRVIITTRIKDVAERS----DDRNYVHELRFLRQDESWQLFCERAFRNSKA-EKGLENLGREMVQKCDGLP 403 (919)
Q Consensus 334 -~~~gs~iivTtr~~~v~~~~----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~~~~~~I~~~~~G~P 403 (919)
...+.+||.||...+..... +.....+.++..+.++..++|..+....... ..+ ...++..+.|+-
T Consensus 318 ~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvd----l~~la~~t~g~s 389 (438)
T PTZ00361 318 DSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVD----LEEFIMAKDELS 389 (438)
T ss_pred cccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcC----HHHHHHhcCCCC
Confidence 22356788888755443321 1112678999999999999999776433221 112 234555565544
No 142
>PLN03150 hypothetical protein; Provisional
Probab=97.75 E-value=2.9e-05 Score=91.93 Aligned_cols=78 Identities=18% Similarity=0.416 Sum_probs=45.0
Q ss_pred cchhhhccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCc-cccChhhhcCCCCcEEecCCCCCcc
Q 036584 602 HLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNI-GILPSSIVKLQRLQTLDFSGDVGCP 680 (919)
Q Consensus 602 ~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i-~~LP~~l~~L~~L~~L~L~~~~~~~ 680 (919)
.+|..+..+++|+.|+|++ |. +. +.+|..++.+.+|++|+|++|.+ ..+|..+++|++|++|+|++| ...
T Consensus 433 ~ip~~i~~L~~L~~L~Ls~-N~-----l~--g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N-~l~ 503 (623)
T PLN03150 433 FIPNDISKLRHLQSINLSG-NS-----IR--GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN-SLS 503 (623)
T ss_pred cCCHHHhCCCCCCEEECCC-Cc-----cc--CcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC-ccc
Confidence 4455556666666666666 55 43 25565666666666666666666 356666666666666666665 233
Q ss_pred cccCcccc
Q 036584 681 VELPIEIN 688 (919)
Q Consensus 681 ~~lp~~i~ 688 (919)
..+|..+.
T Consensus 504 g~iP~~l~ 511 (623)
T PLN03150 504 GRVPAALG 511 (623)
T ss_pred ccCChHHh
Confidence 35555443
No 143
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=0.00052 Score=80.13 Aligned_cols=194 Identities=15% Similarity=0.159 Sum_probs=109.6
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFN 282 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 282 (919)
.++||.+..++.+.+++..+. -...+.++|+.|+||||+|+.+++...-....+ ..++..-...+.|...-.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~i~~g~~ 87 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVEITEGRS 87 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHHHhcCCC
Confidence 578999988889998887753 235678999999999999999987411111100 001111112222211100
Q ss_pred ccccccccc---cCCHHHHHHHHHHHh-----ccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEe-cchhhhh
Q 036584 283 IMTALEDLE---TKTEEDLARSLRKSL-----EAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITT-RIKDVAE 351 (919)
Q Consensus 283 ~~~~~~~~~---~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~ 351 (919)
. +....+ ....+++ +.+.+.+ .+++-++|+|+++.. ...+.++..+-.-...+.+|++| ....+..
T Consensus 88 ~--d~~eid~~s~~~v~~i-r~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~ 164 (576)
T PRK14965 88 V--DVFEIDGASNTGVDDI-RELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPI 164 (576)
T ss_pred C--CeeeeeccCccCHHHH-HHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhH
Confidence 0 000000 0111222 2222222 344558999999754 45677777776555566666544 4444443
Q ss_pred hcCCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcc-hHHHHH
Q 036584 352 RSDDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLP-LAIVVL 409 (919)
Q Consensus 352 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~P-Lal~~~ 409 (919)
.+......+++.+++.++....+...+...... -..+.+..|++.++|.. .|+..+
T Consensus 165 tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~--i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 165 TILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS--ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 333333678899999999888887655433221 22355677899999876 444444
No 144
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.74 E-value=0.001 Score=77.09 Aligned_cols=196 Identities=12% Similarity=0.069 Sum_probs=112.4
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFN 282 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 282 (919)
.+++|-+..++.+..++..+. -...+.++|+.|+||||+|+.+++..--..... ..++..-...+.|...-.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~-------~~pC~~C~~C~~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPT-------PMPCGECSSCKSIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCC-------CCCCccchHHHHHHcCCC
Confidence 478999999999999987753 345788999999999999999987421111000 000011111122211100
Q ss_pred cccc-ccccccCCHHHHHHHH---HH-HhccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecc-hhhhhhcC
Q 036584 283 IMTA-LEDLETKTEEDLARSL---RK-SLEAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRI-KDVAERSD 354 (919)
Q Consensus 283 ~~~~-~~~~~~~~~~~~~~~l---~~-~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~~ 354 (919)
.... .........+++.... .. -..+++-++|+|+++.. ..++.++..+..-...+.+|++|.. ..+.....
T Consensus 88 ~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~ 167 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIK 167 (563)
T ss_pred CCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHH
Confidence 0000 0000011223332221 11 12356668999999754 4577888877765556666665543 33333222
Q ss_pred CCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHH
Q 036584 355 DRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVV 408 (919)
Q Consensus 355 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~ 408 (919)
.....+++.+++.++....+.+.+..... +-..+.+..|++.++|.+-.+..
T Consensus 168 SRc~~~~f~~l~~~el~~~L~~i~~~egi--~id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 168 SRCQHFNFRLLSLEKIYNMLKKVCLEDQI--KYEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HhceEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 33367899999999998888877644332 22245677789999998854433
No 145
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.72 E-value=0.00015 Score=73.75 Aligned_cols=184 Identities=16% Similarity=0.150 Sum_probs=112.1
Q ss_pred CCCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEE-EEeCCCCCHHHHHHHHHHH
Q 036584 202 EENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAW-VSVSQDYKIKDLLLRIIKS 280 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~w-v~~~~~~~~~~~~~~il~~ 280 (919)
-++++|-+..++.+.+.+... .......||++|.|||+-|..+++..--..-|.+.+- .++|...... +.+.=+
T Consensus 35 ~de~~gQe~vV~~L~~a~~~~--~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~Ki-- 109 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLRR--ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVREKI-- 109 (346)
T ss_pred HHhhcchHHHHHHHHHHHhhc--CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhhhh--
Confidence 357889888888888888873 4788999999999999999999875333344544332 3343221111 111100
Q ss_pred hcccccccccccCCHHHHHHHHHHHh--ccCc-eEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecc-hhhhhhcC
Q 036584 281 FNIMTALEDLETKTEEDLARSLRKSL--EAYS-YLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRI-KDVAERSD 354 (919)
Q Consensus 281 l~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~-~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~~ 354 (919)
.+.+.+........ .-++ -.+|||+++.. +.|..+...+.+....++.|+.+.. ..+.....
T Consensus 110 ------------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~ 177 (346)
T KOG0989|consen 110 ------------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV 177 (346)
T ss_pred ------------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHH
Confidence 11111111110000 1123 47889999865 6799999888876666776654433 22222222
Q ss_pred CCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcch
Q 036584 355 DRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPL 404 (919)
Q Consensus 355 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PL 404 (919)
.....+..++|.+++...-++..+-..+.+ -..+..+.|++.++|.=-
T Consensus 178 SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~--~d~~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 178 SRCQKFRFKKLKDEDIVDRLEKIASKEGVD--IDDDALKLIAKISDGDLR 225 (346)
T ss_pred hhHHHhcCCCcchHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHH
Confidence 222567889999999999888877554432 234567788998888643
No 146
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=1.3e-05 Score=80.38 Aligned_cols=81 Identities=16% Similarity=0.079 Sum_probs=44.7
Q ss_pred hcCCCcEEEEeecCCCCccCcCCCCCCCCceeEEEceec-CCC--CcchhccCCCcceEEEEccCCCCCC------chhh
Q 036584 759 KLKNLRFLSVKLLDANSFASLQPLSHCQCLVDLRLSGRM-KKL--PEDMHVFLPNLECLSLSVPYPKEDP------MPAL 829 (919)
Q Consensus 759 ~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~--p~~~~~l~~~L~~L~L~~~~l~~~~------~~~l 829 (919)
-++++.++.+..+.......-....++|.+.-|+|+.+. +.. -+.+..+ +.|+.|.+.++.+.+.. .-.+
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f-~~l~dlRv~~~Pl~d~l~~~err~llI 275 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGF-PQLVDLRVSENPLSDPLRGGERRFLLI 275 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCC-chhheeeccCCcccccccCCcceEEEE
Confidence 357788777754422222222334456666667776542 211 1123344 88888888888764211 1124
Q ss_pred hcCCCCCeEEE
Q 036584 830 EMLPNLIILDL 840 (919)
Q Consensus 830 ~~lp~L~~L~L 840 (919)
+.|++++.|+=
T Consensus 276 aRL~~v~vLNG 286 (418)
T KOG2982|consen 276 ARLTKVQVLNG 286 (418)
T ss_pred eeccceEEecC
Confidence 67888877753
No 147
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.69 E-value=0.00064 Score=77.87 Aligned_cols=159 Identities=14% Similarity=0.176 Sum_probs=92.1
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKS 305 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 305 (919)
...+.|+|..|+|||.|++.+++.......-..+++++.. +++.++...+.. .. ...+++.
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitae------ef~~el~~al~~---------~~----~~~f~~~ 374 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSE------EFTNEFINSIRD---------GK----GDSFRRR 374 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH------HHHHHHHHHHHh---------cc----HHHHHHH
Confidence 3468999999999999999999842211112335666543 344444433321 01 1123333
Q ss_pred hccCceEEEEecccch---hHHHH-HHhhCCC-CCCCcEEEEEecch---------hhhhhcCCCCceEecCCCChHhHH
Q 036584 306 LEAYSYLMVIDDIWHK---EDWVS-LKSAFPE-NKIGSRVIITTRIK---------DVAERSDDRNYVHELRFLRQDESW 371 (919)
Q Consensus 306 l~~~~~LlVlDdv~~~---~~~~~-l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~~l~~L~~~~~~ 371 (919)
++. .=+|||||+... +.|.. +...+.. ...|..|||||... .+...+... -.++|...+.+.-.
T Consensus 375 y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~G-Lvv~I~~PD~EtR~ 452 (617)
T PRK14086 375 YRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWG-LITDVQPPELETRI 452 (617)
T ss_pred hhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcC-ceEEcCCCCHHHHH
Confidence 332 348899999643 22322 2222221 12355688888752 222233233 68899999999999
Q ss_pred HHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHH
Q 036584 372 QLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIV 407 (919)
Q Consensus 372 ~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~ 407 (919)
+++++++...... --.+++.-|++++.+..-.|.
T Consensus 453 aIL~kka~~r~l~--l~~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 453 AILRKKAVQEQLN--APPEVLEFIASRISRNIRELE 486 (617)
T ss_pred HHHHHHHHhcCCC--CCHHHHHHHHHhccCCHHHHH
Confidence 9999887554322 224667777777776654443
No 148
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.69 E-value=5.3e-05 Score=83.09 Aligned_cols=119 Identities=18% Similarity=0.188 Sum_probs=76.6
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFN 282 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 282 (919)
.++++.++..+.+...|... +.|.++|++|+|||++|+.+++.......|+.+.||++++..+..+++....-.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-- 248 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-- 248 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC--
Confidence 35777888889999888764 478889999999999999999854445577889999999988877665432110
Q ss_pred ccccccccccCCHHHHHHHHHHHh--ccCceEEEEecccchh---HHHHHHhhCC
Q 036584 283 IMTALEDLETKTEEDLARSLRKSL--EAYSYLMVIDDIWHKE---DWVSLKSAFP 332 (919)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~---~~~~l~~~l~ 332 (919)
.. ..... ..-..+.+.+.. .+++++||+|++.... .+..+...+.
T Consensus 249 --~v--gy~~~-~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 249 --GV--GFRRK-DGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred --CC--CeEec-CchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 00 00000 011222222222 2468999999997543 2444444443
No 149
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.67 E-value=0.00031 Score=77.72 Aligned_cols=174 Identities=15% Similarity=0.177 Sum_probs=98.1
Q ss_pred CCCccccccCHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCH
Q 036584 202 EENPVGFEDDTDLLLAKLLDK-----------EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKI 270 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 270 (919)
-.++.|.+..+++|.+.+... -...+-|.++|++|+|||+||+.+++. ....| +.+..+
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f---i~i~~s----- 213 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF---IRVVGS----- 213 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE---EEEehH-----
Confidence 346788888888887766421 123567999999999999999999984 33333 122111
Q ss_pred HHHHHHHHHHhcccccccccccCCHHHHHHHHHH-HhccCceEEEEecccch------------h----HHHHHHhhCCC
Q 036584 271 KDLLLRIIKSFNIMTALEDLETKTEEDLARSLRK-SLEAYSYLMVIDDIWHK------------E----DWVSLKSAFPE 333 (919)
Q Consensus 271 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~------------~----~~~~l~~~l~~ 333 (919)
.+ .....+ .. ......+.. .....+.+|+||+++.. . .+..+...+..
T Consensus 214 -~l----~~k~~g---------e~-~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~ 278 (398)
T PTZ00454 214 -EF----VQKYLG---------EG-PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDG 278 (398)
T ss_pred -HH----HHHhcc---------hh-HHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhc
Confidence 11 111100 01 112222333 23567899999998632 0 12233333332
Q ss_pred --CCCCcEEEEEecchhhhhh--cC--CCCceEecCCCChHhHHHHHHHHhccCCCC-chhhHHHHHHHHHHcCCcch
Q 036584 334 --NKIGSRVIITTRIKDVAER--SD--DRNYVHELRFLRQDESWQLFCERAFRNSKA-EKGLENLGREMVQKCDGLPL 404 (919)
Q Consensus 334 --~~~gs~iivTtr~~~v~~~--~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~~~~~~I~~~~~G~PL 404 (919)
...+..||.||...+.... .. .....+.++..+.++..++|..+....... ..+ ..++++.+.|.--
T Consensus 279 ~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~sg 352 (398)
T PTZ00454 279 FDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKISA 352 (398)
T ss_pred cCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCCH
Confidence 2245678888875543322 11 122678899999999888888665432211 112 3456667766643
No 150
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.66 E-value=0.0014 Score=70.35 Aligned_cols=196 Identities=15% Similarity=0.090 Sum_probs=110.8
Q ss_pred CccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCc-------------cCCCCEEEEEEeCCCCCH
Q 036584 204 NPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDV-------------KNKFDYCAWVSVSQDYKI 270 (919)
Q Consensus 204 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~-------------~~~f~~~~wv~~~~~~~~ 270 (919)
+++|.+..++.+.+.+..+. -.....++|+.|+||+++|..+++..-- ...+.-..|+.-.....-
T Consensus 5 ~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 57899888888888887753 2468999999999999999888763111 111222334421100000
Q ss_pred HHHHHHHHHHhcccccccccccCCHHHHHHHHHHHh-----ccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEE-
Q 036584 271 KDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSL-----EAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVII- 342 (919)
Q Consensus 271 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv- 342 (919)
..+-..-+...+.... .......++ ++.+.+.+ .+.+-++|+|+++.. .....++..+-.-. .+.+|+
T Consensus 84 ~~~~~~~~~~~~~~~~--~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi 159 (314)
T PRK07399 84 KLITASEAEEAGLKRK--APPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILI 159 (314)
T ss_pred cccchhhhhhcccccc--ccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEE
Confidence 0000000111110000 000111222 23444444 355679999999754 45667777665434 334554
Q ss_pred EecchhhhhhcCCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHH
Q 036584 343 TTRIKDVAERSDDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVL 409 (919)
Q Consensus 343 Ttr~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~ 409 (919)
|+....+...+......+.+.+++.++..+.+.+....... ......++..++|.|..+..+
T Consensus 160 ~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~-----~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 160 APSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL-----NINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred ECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc-----hhHHHHHHHHcCCCHHHHHHH
Confidence 44444444444444478999999999999999876422111 111357889999999766543
No 151
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.65 E-value=0.00022 Score=87.34 Aligned_cols=154 Identities=18% Similarity=0.179 Sum_probs=86.8
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccC---ccCCC-CEEEEEEeCCCCCHHHHHHHHH
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNND---VKNKF-DYCAWVSVSQDYKIKDLLLRII 278 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~---~~~~f-~~~~wv~~~~~~~~~~~~~~il 278 (919)
+.++||+++++++++.|.... ..-+.++|++|+|||++|+.++.... +.... +..+|. +. ...+ +
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l~----~~~l----~ 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-LD----IGLL----L 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-ee----HHHH----h
Confidence 468999999999999998754 33456999999999999999987421 11111 234442 21 1111 1
Q ss_pred HHhcccccccccccCCHHHHHHHHHHHh-ccCceEEEEecccchh---------HH-HHHHhhCCCCCCCcEEEEEecch
Q 036584 279 KSFNIMTALEDLETKTEEDLARSLRKSL-EAYSYLMVIDDIWHKE---------DW-VSLKSAFPENKIGSRVIITTRIK 347 (919)
Q Consensus 279 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~---------~~-~~l~~~l~~~~~gs~iivTtr~~ 347 (919)
. +.. ... +.++....+.+.+ ..++.+|++|+++... +. +-++..+.++ .-++|.+|...
T Consensus 248 a---g~~----~~g-e~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg--~l~~IgaTt~~ 317 (821)
T CHL00095 248 A---GTK----YRG-EFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG--ELQCIGATTLD 317 (821)
T ss_pred c---cCC----Ccc-HHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC--CcEEEEeCCHH
Confidence 1 100 001 1222233333333 3567899999996321 12 2233333322 24566666555
Q ss_pred hhhhh------cCCCCceEecCCCChHhHHHHHHHH
Q 036584 348 DVAER------SDDRNYVHELRFLRQDESWQLFCER 377 (919)
Q Consensus 348 ~v~~~------~~~~~~~~~l~~L~~~~~~~lf~~~ 377 (919)
+.... .......+.++..+.++...++...
T Consensus 318 ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 318 EYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 43221 1112257888999999988887643
No 152
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.65 E-value=1.8e-06 Score=90.62 Aligned_cols=125 Identities=22% Similarity=0.213 Sum_probs=60.5
Q ss_pred CCCCceeEEEceecC--C-CCcchhccCCCcceEEEEccCCCCCC-chhh-hcCCCCCeEEEeeccccCee----EEEcC
Q 036584 784 HCQCLVDLRLSGRMK--K-LPEDMHVFLPNLECLSLSVPYPKEDP-MPAL-EMLPNLIILDLHFRCHYVKK----LGCRA 854 (919)
Q Consensus 784 ~~~~L~~L~L~~~~~--~-~p~~~~~l~~~L~~L~L~~~~l~~~~-~~~l-~~lp~L~~L~L~~~~~~~~~----~~~~~ 854 (919)
.+++|+.|.++++.. . --..++.-++.|+.+++..|...-+. +..+ .++|.|+.|.|+++..+..+ +....
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 345666666665431 0 11122222466666666666432111 2222 25666777766644332222 11122
Q ss_pred CCCcccceeEEe-cCCcccEEE-ccCCcccccceEEccccCccC---CcccccCCCCCCe
Q 036584 855 EGFPLLEILQLD-ADGLVEWQV-EEGAMPVLRGLKIAAEIPKLK---IPERLRSVPPPAE 909 (919)
Q Consensus 855 ~~f~~L~~L~l~-~~~l~~~~~-~~~~~p~L~~L~l~~nC~~l~---lp~~l~~L~~L~~ 909 (919)
.+...|+.|.|. ++.+++-.. ....+++|+++++.+ |..+. +-..-.+|++++.
T Consensus 398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~-~q~vtk~~i~~~~~~lp~i~v 456 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELID-CQDVTKEAISRFATHLPNIKV 456 (483)
T ss_pred ccccccceeeecCCCCchHHHHHHHhhCcccceeeeec-hhhhhhhhhHHHHhhCcccee
Confidence 345566666666 665553321 123466777777777 66655 3233444554443
No 153
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.64 E-value=0.0013 Score=76.58 Aligned_cols=192 Identities=14% Similarity=0.121 Sum_probs=110.7
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFN 282 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 282 (919)
.+++|.+..++.+.+++..+. -...+.++|+.|+||||+|+.+.+...-...- ...++..-...+.+.....
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~-------~~~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPP-------DGEPCNECEICKAITNGSL 87 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC-------CCCCCCccHHHHHHhcCCC
Confidence 578999999999999888754 34567889999999999999998631110000 0111222222333322111
Q ss_pred ccccccccc---cCCHHHHHHHHHHHh-----ccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEe-cchhhhh
Q 036584 283 IMTALEDLE---TKTEEDLARSLRKSL-----EAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITT-RIKDVAE 351 (919)
Q Consensus 283 ~~~~~~~~~---~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~ 351 (919)
.. ....+ ....+++ +.+.+.. .++.-++|+|+++.. ..+..++..+..-.....+|++| ....+..
T Consensus 88 ~d--v~eidaas~~~vd~i-r~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~ 164 (559)
T PRK05563 88 MD--VIEIDAASNNGVDEI-RDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPA 164 (559)
T ss_pred CC--eEEeeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcH
Confidence 10 00000 0112222 2222221 355668899999854 56777877776544455555544 4333333
Q ss_pred hcCCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHH
Q 036584 352 RSDDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIV 407 (919)
Q Consensus 352 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~ 407 (919)
.+......++..+++.++....+...+...... -..+.+..|++.++|.+.-+.
T Consensus 165 tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~--i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 165 TILSRCQRFDFKRISVEDIVERLKYILDKEGIE--YEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHHhHheEEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 222233678899999999998888766433221 123567788889988876443
No 154
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.63 E-value=3.1e-06 Score=88.91 Aligned_cols=134 Identities=20% Similarity=0.156 Sum_probs=94.3
Q ss_pred CCCCCceeEEEceecC--CCCcc-hhccCCCcceEEEEccC-CCCCCchhhh-cCCCCCeEEEeeccccCee-EEEcCCC
Q 036584 783 SHCQCLVDLRLSGRMK--KLPED-MHVFLPNLECLSLSVPY-PKEDPMPALE-MLPNLIILDLHFRCHYVKK-LGCRAEG 856 (919)
Q Consensus 783 ~~~~~L~~L~L~~~~~--~~p~~-~~~l~~~L~~L~L~~~~-l~~~~~~~l~-~lp~L~~L~L~~~~~~~~~-~~~~~~~ 856 (919)
..+..|+.|..+++.. ..+-| ++.-.++|+.|-|..|+ ++......++ +.+.|+.+++..+..+... +.....+
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~ 370 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN 370 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence 3467788888887642 22222 23336899999999996 4444444555 6899999999854433322 3333467
Q ss_pred CcccceeEEe-cCCcccE-----EEccCCcccccceEEccccCccC--CcccccCCCCCCeeEecccCC
Q 036584 857 FPLLEILQLD-ADGLVEW-----QVEEGAMPVLRGLKIAAEIPKLK--IPERLRSVPPPAEWECEDSRN 917 (919)
Q Consensus 857 f~~L~~L~l~-~~~l~~~-----~~~~~~~p~L~~L~l~~nC~~l~--lp~~l~~L~~L~~l~~~~~~~ 917 (919)
+|.|+.|.++ |..+++- ......+..|+.+.+++ ||.+. .-..+.+++.|+.+++.+|.+
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n-~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDN-CPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecC-CCCchHHHHHHHhhCcccceeeeechhh
Confidence 8999999999 7666644 22335688999999999 99988 666788888999988888765
No 155
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.63 E-value=0.00036 Score=67.84 Aligned_cols=44 Identities=30% Similarity=0.231 Sum_probs=37.0
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
.++||-++.++++.-...+++ .+-+.|.||+|+||||=+...++
T Consensus 27 ~dIVGNe~tv~rl~via~~gn--mP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGN--MPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCC--CCceEeeCCCCCchhhHHHHHHH
Confidence 578999999888877766654 77889999999999998887776
No 156
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.62 E-value=4.4e-05 Score=55.01 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=35.1
Q ss_pred ceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccCh
Q 036584 611 FLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILPS 660 (919)
Q Consensus 611 ~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~ 660 (919)
++|++|++++ +. +. .+|..+++|++|++|++++|.|+.+|.
T Consensus 1 ~~L~~L~l~~-N~-----i~---~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSN-NQ-----IT---DLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETS-SS------S---SHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccC-CC-----Cc---ccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 4689999999 88 88 899889999999999999999987764
No 157
>CHL00176 ftsH cell division protein; Validated
Probab=97.60 E-value=0.00052 Score=80.39 Aligned_cols=173 Identities=15% Similarity=0.185 Sum_probs=97.2
Q ss_pred CCccccccCHHHHHHHH---hcCC-------CCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHH
Q 036584 203 ENPVGFEDDTDLLLAKL---LDKE-------QRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKD 272 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L---~~~~-------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 272 (919)
.+++|.++.++++.+.+ .... ...+-|.++|++|+|||+||+.++.. .... |+.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e--~~~p-----~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AEVP-----FFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC-----eeeccHH----H
Confidence 46788877666655443 3221 12456899999999999999999984 2222 3333211 1
Q ss_pred HHHHHHHHhcccccccccccCCHHHHHHHHHHHhccCceEEEEecccch------------hH----HHHHHhhCCC--C
Q 036584 273 LLLRIIKSFNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHK------------ED----WVSLKSAFPE--N 334 (919)
Q Consensus 273 ~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~------------~~----~~~l~~~l~~--~ 334 (919)
+. .... ......+...+.+.....+++|+|||++.. +. +..++..+.. .
T Consensus 252 f~----~~~~---------g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~ 318 (638)
T CHL00176 252 FV----EMFV---------GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG 318 (638)
T ss_pred HH----HHhh---------hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC
Confidence 10 0000 011122333344444677899999999632 11 2333333332 2
Q ss_pred CCCcEEEEEecchhhhhh-c---CCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCc
Q 036584 335 KIGSRVIITTRIKDVAER-S---DDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGL 402 (919)
Q Consensus 335 ~~gs~iivTtr~~~v~~~-~---~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~ 402 (919)
..+..||.||...+.... . +.....+.++..+.++-.++++.++...... .......+++.+.|.
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~---~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS---PDVSLELIARRTPGF 387 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc---hhHHHHHHHhcCCCC
Confidence 345566667765433221 1 1122678899999999999998887542211 122356678888773
No 158
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.60 E-value=0.00088 Score=75.45 Aligned_cols=153 Identities=14% Similarity=0.094 Sum_probs=86.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKS 305 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 305 (919)
...+.|+|+.|+|||+|++.+++. .......+++++. ..+...+...+... . ...+++.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~~------~~f~~~~~~~l~~~---------~----~~~f~~~ 199 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVRS------ELFTEHLVSAIRSG---------E----MQRFRQF 199 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEeeH------HHHHHHHHHHHhcc---------h----HHHHHHH
Confidence 457899999999999999999984 2222233555543 33444444443210 0 1223333
Q ss_pred hccCceEEEEecccchhH--H--HHHHhhCCC-CCCCcEEEEEecch---------hhhhhcCCCCceEecCCCChHhHH
Q 036584 306 LEAYSYLMVIDDIWHKED--W--VSLKSAFPE-NKIGSRVIITTRIK---------DVAERSDDRNYVHELRFLRQDESW 371 (919)
Q Consensus 306 l~~~~~LlVlDdv~~~~~--~--~~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~~l~~L~~~~~~ 371 (919)
.+ ..-+|++||+..... | +.+...+.. ...|..||+||... .+...+... ..+++.+++.++..
T Consensus 200 ~~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~G-l~~~l~~pd~e~r~ 277 (445)
T PRK12422 200 YR-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWG-IAIPLHPLTKEGLR 277 (445)
T ss_pred cc-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCC-eEEecCCCCHHHHH
Confidence 33 345888999865321 1 222222211 11255688887542 122222222 68899999999999
Q ss_pred HHHHHHhccCCCCchhhHHHHHHHHHHcCCcc
Q 036584 372 QLFCERAFRNSKAEKGLENLGREMVQKCDGLP 403 (919)
Q Consensus 372 ~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 403 (919)
+++.+++-..... --.++..-|+..+.|.-
T Consensus 278 ~iL~~k~~~~~~~--l~~evl~~la~~~~~di 307 (445)
T PRK12422 278 SFLERKAEALSIR--IEETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHHHHHcCCC--CCHHHHHHHHHhcCCCH
Confidence 9998877543321 12345555666666443
No 159
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.60 E-value=0.00058 Score=83.89 Aligned_cols=155 Identities=11% Similarity=0.082 Sum_probs=85.3
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCC----CCEEEE-EEeCCCCCHHHHHHHH
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNK----FDYCAW-VSVSQDYKIKDLLLRI 277 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~w-v~~~~~~~~~~~~~~i 277 (919)
+.++||++++.+++..|.... ..-+.++|++|+|||++|..++........ ....+| +.++ .+
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~------~l---- 240 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG------AL---- 240 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH------HH----
Confidence 469999999999999997754 334568999999999999999874211110 122222 2221 11
Q ss_pred HHHhcccccccccccCCHHHHHHHHHHHh-c-cCceEEEEecccchh---------HHHHHHhhCCCCCCCcEEEEEecc
Q 036584 278 IKSFNIMTALEDLETKTEEDLARSLRKSL-E-AYSYLMVIDDIWHKE---------DWVSLKSAFPENKIGSRVIITTRI 346 (919)
Q Consensus 278 l~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~-~~~~LlVlDdv~~~~---------~~~~l~~~l~~~~~gs~iivTtr~ 346 (919)
+. +. .... +.+.....+.+.+ + +++.+|++|+++... +...++.+....+ .-++|-+|..
T Consensus 241 ~a---~~----~~~g-~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaTt~ 311 (852)
T TIGR03346 241 IA---GA----KYRG-EFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGATTL 311 (852)
T ss_pred hh---cc----hhhh-hHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeCcH
Confidence 10 00 0000 1122223333333 2 468999999997431 1122222222222 2455555554
Q ss_pred hhhhhhcC------CCCceEecCCCChHhHHHHHHHHh
Q 036584 347 KDVAERSD------DRNYVHELRFLRQDESWQLFCERA 378 (919)
Q Consensus 347 ~~v~~~~~------~~~~~~~l~~L~~~~~~~lf~~~~ 378 (919)
.+.-.... .....+.++..+.++...++....
T Consensus 312 ~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 312 DEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 43322111 111568899999999999887653
No 160
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.59 E-value=0.00035 Score=83.36 Aligned_cols=156 Identities=18% Similarity=0.171 Sum_probs=87.6
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccC-C---CCEEEEEEeCCCCCHHHHHHHHH
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKN-K---FDYCAWVSVSQDYKIKDLLLRII 278 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-~---f~~~~wv~~~~~~~~~~~~~~il 278 (919)
+.++||++++.++++.|.... ..-+.++|++|+|||++|+.++....... . .++.+|.. +.. .++
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~----~ll 254 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIG----SLL 254 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHH----HHh
Confidence 469999999999999998753 23456899999999999999987321111 1 13444421 111 111
Q ss_pred HHhcccccccccccCCHHHHHHHHHHHh-ccCceEEEEecccch----------hHHHHHHhhCCCCCCCcEEEEEecch
Q 036584 279 KSFNIMTALEDLETKTEEDLARSLRKSL-EAYSYLMVIDDIWHK----------EDWVSLKSAFPENKIGSRVIITTRIK 347 (919)
Q Consensus 279 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~----------~~~~~l~~~l~~~~~gs~iivTtr~~ 347 (919)
. +.. .. -+.+.....+.+.+ +..+.+|++|+++.. .+...++.++...+ .-++|-+|...
T Consensus 255 a---G~~----~~-Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~~ 325 (758)
T PRK11034 255 A---GTK----YR-GDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTYQ 325 (758)
T ss_pred c---ccc----hh-hhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCChH
Confidence 0 000 00 01222333333333 345789999999742 12222333222222 34555555544
Q ss_pred hhhhhcC------CCCceEecCCCChHhHHHHHHHHh
Q 036584 348 DVAERSD------DRNYVHELRFLRQDESWQLFCERA 378 (919)
Q Consensus 348 ~v~~~~~------~~~~~~~l~~L~~~~~~~lf~~~~ 378 (919)
+...... .....+.++..+.+++.+++....
T Consensus 326 E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 4322111 111578999999999999987643
No 161
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.58 E-value=0.00069 Score=82.89 Aligned_cols=154 Identities=12% Similarity=0.093 Sum_probs=84.6
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCC-----CCEEEEEEeCCCCCHHHHHHHH
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNK-----FDYCAWVSVSQDYKIKDLLLRI 277 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~~i 277 (919)
+.++||+.++.+++..|.... ..-+.++|++|+|||+||+.++........ -..++++.++.. +
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l------~--- 246 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL------V--- 246 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhh------h---
Confidence 569999999999999998754 335669999999999999999874211110 012333333311 0
Q ss_pred HHHhcccccccccccCCHHHHHHHHHHHh--ccCceEEEEecccchh---------HHHH-HHhhCCCCCCCcEEEEEec
Q 036584 278 IKSFNIMTALEDLETKTEEDLARSLRKSL--EAYSYLMVIDDIWHKE---------DWVS-LKSAFPENKIGSRVIITTR 345 (919)
Q Consensus 278 l~~l~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~---------~~~~-l~~~l~~~~~gs~iivTtr 345 (919)
... .... ..+.....+.+.+ .+.+.+|++|+++... +-.. +++.+.. + .-++|-+|.
T Consensus 247 -ag~-------~~~g-~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~-g-~l~~IgaTt 315 (857)
T PRK10865 247 -AGA-------KYRG-EFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR-G-ELHCVGATT 315 (857)
T ss_pred -hcc-------chhh-hhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc-C-CCeEEEcCC
Confidence 000 0000 1112222222222 2468999999997542 1222 3333322 2 345666555
Q ss_pred chhhhhhcC------CCCceEecCCCChHhHHHHHHHHh
Q 036584 346 IKDVAERSD------DRNYVHELRFLRQDESWQLFCERA 378 (919)
Q Consensus 346 ~~~v~~~~~------~~~~~~~l~~L~~~~~~~lf~~~~ 378 (919)
..+....+. .....+.+...+.++...++....
T Consensus 316 ~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 316 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred CHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 544321111 111356677778899999886543
No 162
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.57 E-value=0.00069 Score=81.58 Aligned_cols=161 Identities=16% Similarity=0.174 Sum_probs=91.3
Q ss_pred CCCccccccCHHHHHHHHhcC----CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHH
Q 036584 202 EENPVGFEDDTDLLLAKLLDK----EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRI 277 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 277 (919)
+.+.+|.++-+++|+++|... ..+..++.++|++|+||||+|+.++. .....|-. ++.+...+..++...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~~~---i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKYVR---MALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCEEE---EEcCCCCCHHHhccch
Confidence 456899999999999988742 22456899999999999999999997 34444422 3333333322221110
Q ss_pred HHHhcccccccccccCCHHHHHHHHHHHhccCceEEEEecccchh------HHHHHHhhCCCC---------------CC
Q 036584 278 IKSFNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHKE------DWVSLKSAFPEN---------------KI 336 (919)
Q Consensus 278 l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------~~~~l~~~l~~~---------------~~ 336 (919)
+... ......+...+.+.- ...-+++||.++... ..+.+...+... -.
T Consensus 396 -~~~~---------g~~~G~~~~~l~~~~-~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls 464 (784)
T PRK10787 396 -RTYI---------GSMPGKLIQKMAKVG-VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLS 464 (784)
T ss_pred -hccC---------CCCCcHHHHHHHhcC-CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCC
Confidence 0000 001122333333322 234478999997431 134454444321 12
Q ss_pred CcEEEEEecchhhhhhcCCCCceEecCCCChHhHHHHHHHHh
Q 036584 337 GSRVIITTRIKDVAERSDDRNYVHELRFLRQDESWQLFCERA 378 (919)
Q Consensus 337 gs~iivTtr~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 378 (919)
..-+|.|+....+....-.....+.+.+++.++-.++.+++.
T Consensus 465 ~v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 465 DVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred ceEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 333444554443333333333688899999999888887765
No 163
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.50 E-value=0.00051 Score=64.60 Aligned_cols=88 Identities=20% Similarity=0.050 Sum_probs=48.3
Q ss_pred EEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHHh
Q 036584 227 LVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSL 306 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l 306 (919)
..+.|+|++|+||||+|+.++.. .......+++++.+........... ..... . .............+.+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~---~~~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLL--LIIVG-G---KKASGSGELRLRLALALA 74 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHH--hhhhh-c---cCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999984 3332234566655443222111111 00000 0 111122233333444444
Q ss_pred ccC-ceEEEEecccchh
Q 036584 307 EAY-SYLMVIDDIWHKE 322 (919)
Q Consensus 307 ~~~-~~LlVlDdv~~~~ 322 (919)
+.. ..+|++|+++...
T Consensus 75 ~~~~~~viiiDei~~~~ 91 (148)
T smart00382 75 RKLKPDVLILDEITSLL 91 (148)
T ss_pred HhcCCCEEEEECCcccC
Confidence 443 4899999998654
No 164
>PLN03150 hypothetical protein; Provisional
Probab=97.50 E-value=0.00014 Score=86.21 Aligned_cols=77 Identities=22% Similarity=0.402 Sum_probs=67.3
Q ss_pred eEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCc-cccChhhhcCCCCcEEecCCCCCcccccCcccccc
Q 036584 612 LLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNI-GILPSSIVKLQRLQTLDFSGDVGCPVELPIEINMM 690 (919)
Q Consensus 612 ~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i-~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L 690 (919)
.++.|+|++ +. +. +.+|..+++|.+|++|+|++|.+ +.+|..++.+++|++|+|++| .....+|..+.+|
T Consensus 419 ~v~~L~L~~-n~-----L~--g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~~L 489 (623)
T PLN03150 419 FIDGLGLDN-QG-----LR--GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN-SFNGSIPESLGQL 489 (623)
T ss_pred EEEEEECCC-CC-----cc--ccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCC-CCCCCCchHHhcC
Confidence 488899999 77 65 38899999999999999999999 589999999999999999999 3445788888888
Q ss_pred ccccccc
Q 036584 691 QELRHLI 697 (919)
Q Consensus 691 ~~L~~L~ 697 (919)
++|++|.
T Consensus 490 ~~L~~L~ 496 (623)
T PLN03150 490 TSLRILN 496 (623)
T ss_pred CCCCEEE
Confidence 8888884
No 165
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.48 E-value=0.00011 Score=57.74 Aligned_cols=60 Identities=25% Similarity=0.350 Sum_probs=49.7
Q ss_pred CcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhh-hhhcccccceEEeecCCCc
Q 036584 581 SLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLS-EKIGDLIHLKYLGLRNSNI 655 (919)
Q Consensus 581 ~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp-~~i~~L~~Lr~L~L~~~~i 655 (919)
++|+.|.+.++. .....+..|..+++|++|++++ +. +. .+| ..+..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~------l~~i~~~~f~~l~~L~~L~l~~-N~-----l~---~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNK------LTEIPPDSFSNLPNLETLDLSN-NN-----LT---SIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSST------ESEECTTTTTTGTTESEEEETS-SS-----ES---EEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCC------CCccCHHHHcCCCCCCEeEccC-Cc-----cC---ccCHHHHcCCCCCCEEeCcCCcC
Confidence 478889998872 3445567899999999999999 88 77 565 5789999999999999975
No 166
>PRK08116 hypothetical protein; Validated
Probab=97.45 E-value=0.00059 Score=71.57 Aligned_cols=101 Identities=24% Similarity=0.371 Sum_probs=57.4
Q ss_pred EEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHHh
Q 036584 227 LVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSL 306 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l 306 (919)
..+.|+|.+|+|||.||..+++. +..+...++++++ .+++..+........ ..+. ..+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~~------~~ll~~i~~~~~~~~------~~~~----~~~~~~l 176 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVNF------PQLLNRIKSTYKSSG------KEDE----NEIIRSL 176 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEH------HHHHHHHHHHHhccc------cccH----HHHHHHh
Confidence 46899999999999999999995 3222344667654 344555544432211 1111 2233444
Q ss_pred ccCceEEEEeccc--chhHHHH--HHhhCCC-CCCCcEEEEEecc
Q 036584 307 EAYSYLMVIDDIW--HKEDWVS--LKSAFPE-NKIGSRVIITTRI 346 (919)
Q Consensus 307 ~~~~~LlVlDdv~--~~~~~~~--l~~~l~~-~~~gs~iivTtr~ 346 (919)
.+.. ||||||+. ...+|.. +...+.. -..+..+|+||..
T Consensus 177 ~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 177 VNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred cCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 4434 89999994 3344533 2222221 1235568888863
No 167
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.44 E-value=0.0045 Score=62.22 Aligned_cols=105 Identities=19% Similarity=0.361 Sum_probs=65.0
Q ss_pred CCCCCccccccCHHHHHHHHhc--CCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHH
Q 036584 200 AVEENPVGFEDDTDLLLAKLLD--KEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRI 277 (919)
Q Consensus 200 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 277 (919)
+.-++++|.|..++.|++=... ......-|.++|..|.|||++++.+.+...-++ .--|.+...
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~---------- 89 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKE---------- 89 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHH----------
Confidence 3446799999999888664432 112355678899999999999999998321111 112223211
Q ss_pred HHHhcccccccccccCCHHHHHHHHHHHhccCceEEEEeccc---chhHHHHHHhhCCC
Q 036584 278 IKSFNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIW---HKEDWVSLKSAFPE 333 (919)
Q Consensus 278 l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~l~~ 333 (919)
+-.+...+.+.|+. +..+|+|++||+. .+..+..++..+..
T Consensus 90 -------------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeG 133 (249)
T PF05673_consen 90 -------------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEG 133 (249)
T ss_pred -------------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcC
Confidence 11223334444432 4568999999984 33567777777664
No 168
>PRK10536 hypothetical protein; Provisional
Probab=97.43 E-value=0.0011 Score=67.38 Aligned_cols=132 Identities=12% Similarity=0.117 Sum_probs=77.1
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEE--e--CC-----CCCHHHH
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVS--V--SQ-----DYKIKDL 273 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~--~--~~-----~~~~~~~ 273 (919)
..+.+|......+..++... ..|.+.|++|+|||+||..+..+.-..+.|+.++-+. + ++ +-+.++-
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK 130 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEK 130 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHH
Confidence 45677888888888888663 4999999999999999999887533344555443331 1 11 0122222
Q ss_pred HH----HHHHHhcccccccccccCCHHHHHHHH-----------HHHhccCce---EEEEecccchhHHHHHHhhCCCCC
Q 036584 274 LL----RIIKSFNIMTALEDLETKTEEDLARSL-----------RKSLEAYSY---LMVIDDIWHKEDWVSLKSAFPENK 335 (919)
Q Consensus 274 ~~----~il~~l~~~~~~~~~~~~~~~~~~~~l-----------~~~l~~~~~---LlVlDdv~~~~~~~~l~~~l~~~~ 335 (919)
+. .+...+.... ..+.+...+ ..++++..+ +||+|++.+.+. ..+...+.+.+
T Consensus 131 ~~p~~~pi~D~L~~~~--------~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~-~~~k~~ltR~g 201 (262)
T PRK10536 131 FAPYFRPVYDVLVRRL--------GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA-AQMKMFLTRLG 201 (262)
T ss_pred HHHHHHHHHHHHHHHh--------ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH-HHHHHHHhhcC
Confidence 22 2222221100 001111111 135566655 999999976643 44555555667
Q ss_pred CCcEEEEEecch
Q 036584 336 IGSRVIITTRIK 347 (919)
Q Consensus 336 ~gs~iivTtr~~ 347 (919)
.+|++|+|.-..
T Consensus 202 ~~sk~v~~GD~~ 213 (262)
T PRK10536 202 ENVTVIVNGDIT 213 (262)
T ss_pred CCCEEEEeCChh
Confidence 899999987543
No 169
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.42 E-value=0.0027 Score=77.37 Aligned_cols=161 Identities=17% Similarity=0.184 Sum_probs=86.1
Q ss_pred CCCccccccCHHHHHHHHhcC----CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHH
Q 036584 202 EENPVGFEDDTDLLLAKLLDK----EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRI 277 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 277 (919)
..+++|.++.+++|.+++... ..+..++.++|++|+|||++|+.+++ .....|- -++++...+..++.
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~--~l~~~~~---~i~~~~~~~~~~i~--- 390 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK--ALNRKFV---RFSLGGVRDEAEIR--- 390 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH--HhcCCeE---EEeCCCcccHHHHc---
Confidence 345889999999998877532 22345899999999999999999998 3444442 22233222222211
Q ss_pred HHHhcccccccccccCCHHHHHHHHHHHhccCceEEEEecccchh------HHHHHHhhCCC--------C-------CC
Q 036584 278 IKSFNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHKE------DWVSLKSAFPE--------N-------KI 336 (919)
Q Consensus 278 l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------~~~~l~~~l~~--------~-------~~ 336 (919)
+... .........+...+...-. ++-+|+||+++... ....+...+.. . ..
T Consensus 391 -----g~~~--~~~g~~~g~i~~~l~~~~~-~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s 462 (775)
T TIGR00763 391 -----GHRR--TYVGAMPGRIIQGLKKAKT-KNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLS 462 (775)
T ss_pred -----CCCC--ceeCCCCchHHHHHHHhCc-CCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccC
Confidence 1000 0011111233333333322 33478999997541 12233332221 1 01
Q ss_pred CcEEEEEecchh-hhhhcCCCCceEecCCCChHhHHHHHHHHh
Q 036584 337 GSRVIITTRIKD-VAERSDDRNYVHELRFLRQDESWQLFCERA 378 (919)
Q Consensus 337 gs~iivTtr~~~-v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 378 (919)
+..+|.||.... +..........+++.+++.++-.+++.++.
T Consensus 463 ~v~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 463 KVIFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred CEEEEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 233344444321 222222222678999999998888886654
No 170
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.40 E-value=1.9e-05 Score=89.23 Aligned_cols=195 Identities=23% Similarity=0.213 Sum_probs=132.9
Q ss_pred ccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccChhhhcCCCCcEEecCCCCCcccccCccc
Q 036584 608 ERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVELPIEI 687 (919)
Q Consensus 608 ~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~~i 687 (919)
..+..+..+++.. +. +. ++-..++.+.+|.+|++.+|.|..+...+..+.+|++|++++| .+..+..
T Consensus 69 ~~l~~l~~l~l~~-n~-----i~---~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N--~I~~i~~-- 135 (414)
T KOG0531|consen 69 ESLTSLKELNLRQ-NL-----IA---KILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN--KITKLEG-- 135 (414)
T ss_pred HHhHhHHhhccch-hh-----hh---hhhcccccccceeeeeccccchhhcccchhhhhcchheecccc--ccccccc--
Confidence 3566677777777 66 65 5445588899999999999999888766889999999999999 5555433
Q ss_pred cccccccccccccccccCCCCcCcCcccccccccccchhhccCCCCCCeEEeeecCccccccccchhhH--HhhcCCCcE
Q 036584 688 NMMQELRHLIGNFKGTLPIENLTNLQTLKYVQSKSWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFES--IAKLKNLRF 765 (919)
Q Consensus 688 ~~L~~L~~L~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~--l~~l~~L~~ 765 (919)
+..++.|+.|++..|.......+..+.+|+.+++.++... .. .. +..+.+|+.
T Consensus 136 ------------------l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~----~i---e~~~~~~~~~l~~ 190 (414)
T KOG0531|consen 136 ------------------LSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIV----DI---ENDELSELISLEE 190 (414)
T ss_pred ------------------hhhccchhhheeccCcchhccCCccchhhhcccCCcchhh----hh---hhhhhhhccchHH
Confidence 3445557788888877777777777889999999988632 11 23 466778888
Q ss_pred EEEeecCCCCccCcCCCCCCCCceeEEEceecCCCCcchhccCCC--cceEEEEccCCCCCCchhhhcCCCCCeEEEeec
Q 036584 766 LSVKLLDANSFASLQPLSHCQCLVDLRLSGRMKKLPEDMHVFLPN--LECLSLSVPYPKEDPMPALEMLPNLIILDLHFR 843 (919)
Q Consensus 766 L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~p~~~~~l~~~--L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~ 843 (919)
+.+ ..+.+..+..+.....+..+++..+.-.--..+... .. |+.+++.+|.+... +..+..++++..|++..+
T Consensus 191 l~l---~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~-~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 191 LDL---GGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNEL-VMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSN 265 (414)
T ss_pred Hhc---cCCchhcccchHHHHHHHHhhcccccceeccCcccc-hhHHHHHHhcccCccccc-cccccccccccccchhhc
Confidence 887 445554455555555555556665531111112222 33 89999999987632 256777888888888754
Q ss_pred cc
Q 036584 844 CH 845 (919)
Q Consensus 844 ~~ 845 (919)
..
T Consensus 266 ~~ 267 (414)
T KOG0531|consen 266 RI 267 (414)
T ss_pred cc
Confidence 43
No 171
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.39 E-value=0.0012 Score=76.48 Aligned_cols=174 Identities=15% Similarity=0.168 Sum_probs=94.2
Q ss_pred CCccccccCHHHHHHHHh---c-------CCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHH
Q 036584 203 ENPVGFEDDTDLLLAKLL---D-------KEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKD 272 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~---~-------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 272 (919)
++++|.++.++++.+++. . +....+-+.++|++|+|||+||+.+++. .... ++.++. .+
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~--~~~~-----~~~i~~----~~ 123 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AGVP-----FFSISG----SD 123 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCC-----eeeccH----HH
Confidence 467887777666555443 1 1123456889999999999999999984 2222 233321 11
Q ss_pred HHHHHHHHhcccccccccccCCHHHHHHHHHHHhccCceEEEEecccch------------hHHH----HHHhhCCC--C
Q 036584 273 LLLRIIKSFNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHK------------EDWV----SLKSAFPE--N 334 (919)
Q Consensus 273 ~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~------------~~~~----~l~~~l~~--~ 334 (919)
+. .... ......+...+.......+.+|+|||++.. +.+. .++..+.. .
T Consensus 124 ~~----~~~~---------g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 124 FV----EMFV---------GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred HH----HHHh---------cccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC
Confidence 11 1110 011223333333334566799999999642 1122 22322322 2
Q ss_pred CCCcEEEEEecchhhhh-hc---CCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcc
Q 036584 335 KIGSRVIITTRIKDVAE-RS---DDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLP 403 (919)
Q Consensus 335 ~~gs~iivTtr~~~v~~-~~---~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 403 (919)
..+..||.||...+... .. +.....+.++..+.++-.++|..+....... + ......|++.+.|.-
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~--~~~l~~la~~t~G~s 260 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-P--DVDLKAVARRTPGFS 260 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-c--chhHHHHHHhCCCCC
Confidence 23445566665443211 11 1122678899999999999998776433221 1 112347788887744
No 172
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.37 E-value=0.00059 Score=74.16 Aligned_cols=64 Identities=22% Similarity=0.173 Sum_probs=34.1
Q ss_pred ccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCC-CccccChhhhcCCCCcEEecCCCCCcccccCcc
Q 036584 608 ERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNS-NIGILPSSIVKLQRLQTLDFSGDVGCPVELPIE 686 (919)
Q Consensus 608 ~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~-~i~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~~ 686 (919)
..++.++.|++++ |. +. .+|. -..+|+.|.++++ .++.+|..+. .+|+.|++++| ..+..+|..
T Consensus 49 ~~~~~l~~L~Is~-c~-----L~---sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C-s~L~sLP~s 113 (426)
T PRK15386 49 EEARASGRLYIKD-CD-----IE---SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC-PEISGLPES 113 (426)
T ss_pred HHhcCCCEEEeCC-CC-----Cc---ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCc-ccccccccc
Confidence 3456666666666 55 55 5551 1124666666653 3455665442 45666666665 334445543
No 173
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.37 E-value=0.005 Score=65.87 Aligned_cols=94 Identities=12% Similarity=0.122 Sum_probs=63.4
Q ss_pred cCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecc-hhhhhhcCCCCceEecCCCChHhHHHHHHHHhccCCCC
Q 036584 308 AYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRI-KDVAERSDDRNYVHELRFLRQDESWQLFCERAFRNSKA 384 (919)
Q Consensus 308 ~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 384 (919)
+++-++|+|+++.. ..-..++..+-.-..++.+|++|.+ ..+..-+.+....+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----V- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----C-
Confidence 45679999999855 3455677666655556767776664 34443333444788999999999998886531 1
Q ss_pred chhhHHHHHHHHHHcCCcchHHHHH
Q 036584 385 EKGLENLGREMVQKCDGLPLAIVVL 409 (919)
Q Consensus 385 ~~~~~~~~~~I~~~~~G~PLal~~~ 409 (919)
+ ...+..++..++|.|+.+..+
T Consensus 187 ~---~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 187 S---ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred C---hHHHHHHHHHcCCCHHHHHHH
Confidence 1 122567899999999876544
No 174
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.35 E-value=0.0027 Score=72.03 Aligned_cols=176 Identities=13% Similarity=0.113 Sum_probs=91.2
Q ss_pred CCccccccCHHHHHHHHhc--------CCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHH
Q 036584 203 ENPVGFEDDTDLLLAKLLD--------KEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLL 274 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~--------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 274 (919)
.++.|.+..++.+...... +-...+-|.++|++|+|||.+|+.+++. ....| +-++.+. +
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~~------l- 295 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVGK------L- 295 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhHH------h-
Confidence 3466776666555442211 1123567899999999999999999984 33232 1222211 1
Q ss_pred HHHHHHhcccccccccccCCHHHHHHHHHHHhccCceEEEEecccchh--------------HHHHHHhhCCCCCCCcEE
Q 036584 275 LRIIKSFNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHKE--------------DWVSLKSAFPENKIGSRV 340 (919)
Q Consensus 275 ~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--------------~~~~l~~~l~~~~~gs~i 340 (919)
.... -..+...+...+...-...+++|++|+++..- ....+...+.....+--|
T Consensus 296 ---~~~~---------vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~v 363 (489)
T CHL00195 296 ---FGGI---------VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFV 363 (489)
T ss_pred ---cccc---------cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEE
Confidence 1000 01111222222222224578999999996320 011233333333334445
Q ss_pred EEEecchhhhh-h---cCCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcc
Q 036584 341 IITTRIKDVAE-R---SDDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLP 403 (919)
Q Consensus 341 ivTtr~~~v~~-~---~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 403 (919)
|.||...+... . .+-....+.++.-+.++-.++|..+......... .......+++.+.|.-
T Consensus 364 IaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~-~~~dl~~La~~T~GfS 429 (489)
T CHL00195 364 VATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSW-KKYDIKKLSKLSNKFS 429 (489)
T ss_pred EEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcc-cccCHHHHHhhcCCCC
Confidence 55665543211 1 1122367888988999999999887654321100 0112355667776664
No 175
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.32 E-value=0.0052 Score=67.09 Aligned_cols=136 Identities=18% Similarity=0.202 Sum_probs=80.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHH
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRK 304 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 304 (919)
....+.|||..|.|||.|++.+.+ ....+......+.++ .+......+..+.. .-...+++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~----se~f~~~~v~a~~~-------------~~~~~Fk~ 172 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLT----SEDFTNDFVKALRD-------------NEMEKFKE 172 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEecc----HHHHHHHHHHHHHh-------------hhHHHHHH
Confidence 467999999999999999999999 444444323333333 23334444443322 11233444
Q ss_pred HhccCceEEEEecccch---hHHHH-HHhhCCC-CCCCcEEEEEecch---------hhhhhcCCCCceEecCCCChHhH
Q 036584 305 SLEAYSYLMVIDDIWHK---EDWVS-LKSAFPE-NKIGSRVIITTRIK---------DVAERSDDRNYVHELRFLRQDES 370 (919)
Q Consensus 305 ~l~~~~~LlVlDdv~~~---~~~~~-l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~~l~~L~~~~~ 370 (919)
.. .-=++++||++-. +.|+. +...|.. ...|.+||+|++.. .+....... -.+++++.+.+..
T Consensus 173 ~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~G-l~~~I~~Pd~e~r 249 (408)
T COG0593 173 KY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWG-LVVEIEPPDDETR 249 (408)
T ss_pred hh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhce-eEEeeCCCCHHHH
Confidence 44 3348899999743 22322 2222221 12344899998543 233333333 6899999999999
Q ss_pred HHHHHHHhccCC
Q 036584 371 WQLFCERAFRNS 382 (919)
Q Consensus 371 ~~lf~~~~~~~~ 382 (919)
..++.+++....
T Consensus 250 ~aiL~kka~~~~ 261 (408)
T COG0593 250 LAILRKKAEDRG 261 (408)
T ss_pred HHHHHHHHHhcC
Confidence 999998765443
No 176
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.31 E-value=0.016 Score=58.15 Aligned_cols=181 Identities=17% Similarity=0.185 Sum_probs=105.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeC-CCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHH
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVS-QDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLR 303 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 303 (919)
+..++.++|.-|.|||++.+..... ..+. +..+ |.+. +..+...+...++..+..+... .-..-..+..+.|.
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s--~~~d-~~~~-v~i~~~~~s~~~~~~ai~~~l~~~p~~--~~~~~~e~~~~~L~ 123 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLAS--LNED-QVAV-VVIDKPTLSDATLLEAIVADLESQPKV--NVNAVLEQIDRELA 123 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHh--cCCC-ceEE-EEecCcchhHHHHHHHHHHHhccCccc--hhHHHHHHHHHHHH
Confidence 3569999999999999999955432 1111 1122 3333 3456777888888888762210 00111233444444
Q ss_pred HHh-ccCc-eEEEEecccch--hHHHHHHhh--CCC-CCCCcEEEEEecch-------hhhhhcCCCCce-EecCCCChH
Q 036584 304 KSL-EAYS-YLMVIDDIWHK--EDWVSLKSA--FPE-NKIGSRVIITTRIK-------DVAERSDDRNYV-HELRFLRQD 368 (919)
Q Consensus 304 ~~l-~~~~-~LlVlDdv~~~--~~~~~l~~~--l~~-~~~gs~iivTtr~~-------~v~~~~~~~~~~-~~l~~L~~~ 368 (919)
... ++++ ..+++||..+. +..+.++.. +.. ...--+|+.....+ .+.......... |++.|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 444 5677 89999999754 233333222 221 11112344333211 111111111134 999999999
Q ss_pred hHHHHHHHHhccCCCCchh-hHHHHHHHHHHcCCcchHHHHHHH
Q 036584 369 ESWQLFCERAFRNSKAEKG-LENLGREMVQKCDGLPLAIVVLGG 411 (919)
Q Consensus 369 ~~~~lf~~~~~~~~~~~~~-~~~~~~~I~~~~~G~PLal~~~~~ 411 (919)
+...++..+..+...+.+- -.+....|..+..|.|.+|..++.
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 9999998887665444322 245667899999999999987765
No 177
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.31 E-value=0.0001 Score=87.10 Aligned_cols=103 Identities=19% Similarity=0.174 Sum_probs=56.2
Q ss_pred CCcccEEEEecccccccccccccch-hhhccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCcccc
Q 036584 580 NSLARSLLLFNQWWDETLGVKRHLP-LLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGIL 658 (919)
Q Consensus 580 ~~~lrsL~~~~~~~~~~~~~~~~l~-~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~L 658 (919)
-.+|+.|.+.|.. ......+ .+-..+|.||.|.+++ -. +.. .++-.-..++++|+.||+++|+|+.+
T Consensus 121 r~nL~~LdI~G~~-----~~s~~W~~kig~~LPsL~sL~i~~-~~-----~~~-~dF~~lc~sFpNL~sLDIS~TnI~nl 188 (699)
T KOG3665|consen 121 RQNLQHLDISGSE-----LFSNGWPKKIGTMLPSLRSLVISG-RQ-----FDN-DDFSQLCASFPNLRSLDISGTNISNL 188 (699)
T ss_pred HHhhhhcCccccc-----hhhccHHHHHhhhCcccceEEecC-ce-----ecc-hhHHHHhhccCccceeecCCCCccCc
Confidence 4567777776652 2222222 2334566777777766 44 221 12333345667777777777777666
Q ss_pred ChhhhcCCCCcEEecCCCCCcccccC--ccccccccccccc
Q 036584 659 PSSIVKLQRLQTLDFSGDVGCPVELP--IEINMMQELRHLI 697 (919)
Q Consensus 659 P~~l~~L~~L~~L~L~~~~~~~~~lp--~~i~~L~~L~~L~ 697 (919)
..+++|+|||+|.+++- .+..-+ ..+.+|++|++|+
T Consensus 189 -~GIS~LknLq~L~mrnL--e~e~~~~l~~LF~L~~L~vLD 226 (699)
T KOG3665|consen 189 -SGISRLKNLQVLSMRNL--EFESYQDLIDLFNLKKLRVLD 226 (699)
T ss_pred -HHHhccccHHHHhccCC--CCCchhhHHHHhcccCCCeee
Confidence 56777777777766544 222212 1355555555553
No 178
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0007 Score=76.85 Aligned_cols=163 Identities=17% Similarity=0.232 Sum_probs=96.8
Q ss_pred CCCCccccccCHHHHHHHHhcC----CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHH
Q 036584 201 VEENPVGFEDDTDLLLAKLLDK----EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLR 276 (919)
Q Consensus 201 ~~~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 276 (919)
.+.+-+|.++-+++|+++|.-. .-+.+++++||++|+|||.|++.+++ .....| +-++++.-.|..++
T Consensus 321 Ld~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAEI--- 392 (782)
T COG0466 321 LDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAEI--- 392 (782)
T ss_pred hcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHHh---
Confidence 4457899999999999999642 33457999999999999999999998 666665 23344444343332
Q ss_pred HHHHhcccccccccccCCHHHHHHHHHHHhccCceEEEEecccch------hHHHHHHhhCCCC-C------------CC
Q 036584 277 IIKSFNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHK------EDWVSLKSAFPEN-K------------IG 337 (919)
Q Consensus 277 il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~------~~~~~l~~~l~~~-~------------~g 337 (919)
.++.. .-...+. ..++..+++ .+.++=|++||.++.. +--.+++..|... + -=
T Consensus 393 -----RGHRR-TYIGamP-GrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDL 464 (782)
T COG0466 393 -----RGHRR-TYIGAMP-GKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDL 464 (782)
T ss_pred -----ccccc-cccccCC-hHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccch
Confidence 11110 0001111 222333322 2455679999999743 1223343333211 0 12
Q ss_pred cEEE-EEecch-h-hhhhcCCCCceEecCCCChHhHHHHHHHHhc
Q 036584 338 SRVI-ITTRIK-D-VAERSDDRNYVHELRFLRQDESWQLFCERAF 379 (919)
Q Consensus 338 s~ii-vTtr~~-~-v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 379 (919)
|+|+ |||-|. + +....-..-+++++.+.+.+|-.++-+++..
T Consensus 465 S~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 465 SKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred hheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 5554 444432 2 3333323337999999999999998888763
No 179
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0048 Score=69.82 Aligned_cols=174 Identities=17% Similarity=0.038 Sum_probs=92.1
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFN 282 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 282 (919)
.+|+--....++..+.....--...-|.|.|+.|+|||+||+.+++... +...-.+.+|+++.-.
T Consensus 408 ~d~i~~~s~kke~~n~~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~-------------- 472 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSPVFRHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLD-------------- 472 (952)
T ss_pred CceeecchhhhhhhhhhcccccccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhcc--------------
Confidence 3344333333333333333322355789999999999999999998533 5555667777776321
Q ss_pred ccccccccccCCHHHHHH----HHHHHhccCceEEEEecccch--------hHHHH----HHhhC----C-CCCCCc--E
Q 036584 283 IMTALEDLETKTEEDLAR----SLRKSLEAYSYLMVIDDIWHK--------EDWVS----LKSAF----P-ENKIGS--R 339 (919)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~----~l~~~l~~~~~LlVlDdv~~~--------~~~~~----l~~~l----~-~~~~gs--~ 339 (919)
....+..+. .+.+.+...+.+|||||++-. ..|.. +...+ . ....+. +
T Consensus 473 ---------~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia 543 (952)
T KOG0735|consen 473 ---------GSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIA 543 (952)
T ss_pred ---------chhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEE
Confidence 111222222 233455677999999999632 11211 11111 0 122233 3
Q ss_pred EEEEecchhhhhh-cC---CCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCc
Q 036584 340 VIITTRIKDVAER-SD---DRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGL 402 (919)
Q Consensus 340 iivTtr~~~v~~~-~~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~ 402 (919)
+|.|.....-... .. -...+..|+.+...+-.++++........ ....+...-+..+|+|.
T Consensus 544 ~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~--~~~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 544 VIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLS--DITMDDLDFLSVKTEGY 608 (952)
T ss_pred EEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhh--hhhhHHHHHHHHhcCCc
Confidence 4445543321111 11 11156788999988888887655432221 11222333478888775
No 180
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0032 Score=65.79 Aligned_cols=172 Identities=16% Similarity=0.200 Sum_probs=104.5
Q ss_pred CCccccccCHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHH
Q 036584 203 ENPVGFEDDTDLLLAKLLDK-----------EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIK 271 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 271 (919)
.++=|-++.+++|.+.+.-+ =...+-|.+||++|.|||-||++|++ +.... |+-+.. .
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~At-----FIrvvg----S 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDAT-----FIRVVG----S 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCce-----EEEecc----H
Confidence 45668888888888877543 12467889999999999999999999 34433 333331 1
Q ss_pred HHHHHHHHHhcccccccccccCCHHHHHHHHHHHhc-cCceEEEEecccch-------------h---HHHHHHhhCCCC
Q 036584 272 DLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSLE-AYSYLMVIDDIWHK-------------E---DWVSLKSAFPEN 334 (919)
Q Consensus 272 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~-------------~---~~~~l~~~l~~~ 334 (919)
++... .-+. -..+++.+.+..+ ..+..|++|.++.. + ..-+++..+..+
T Consensus 220 ElVqK----YiGE----------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGF 285 (406)
T COG1222 220 ELVQK----YIGE----------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGF 285 (406)
T ss_pred HHHHH----Hhcc----------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCC
Confidence 22222 2111 1356677777664 56899999998742 1 233455555543
Q ss_pred C--CCcEEEEEecchhhhhhc--CC--CCceEecCCCChHhHHHHHHHHhccCCCC-chhhHHHHHHHHHHcCCcc
Q 036584 335 K--IGSRVIITTRIKDVAERS--DD--RNYVHELRFLRQDESWQLFCERAFRNSKA-EKGLENLGREMVQKCDGLP 403 (919)
Q Consensus 335 ~--~gs~iivTtr~~~v~~~~--~~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~~~~~~I~~~~~G~P 403 (919)
. ..-|||..|.-.++.... .+ ....++++.-+.+.-.++|+-|+..-... .-++ +.|++.|.|.-
T Consensus 286 D~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~s 357 (406)
T COG1222 286 DPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGFS 357 (406)
T ss_pred CCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCCc
Confidence 3 357899888655544322 11 22578888666666677887776543322 2232 34666666654
No 181
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.26 E-value=0.0039 Score=75.80 Aligned_cols=172 Identities=16% Similarity=0.156 Sum_probs=96.1
Q ss_pred CCccccccCHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHH
Q 036584 203 ENPVGFEDDTDLLLAKLLDK-----------EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIK 271 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 271 (919)
.++.|.+..++.+.+.+... -...+-|.++|++|+|||++|+.+++. ...+| +.+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~~---- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRGP---- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEehH----
Confidence 45678888877777766421 123456899999999999999999984 33333 222211
Q ss_pred HHHHHHHHHhcccccccccccCCHHHHHHHHHHHh-ccCceEEEEecccch--------------hHHHHHHhhCCC--C
Q 036584 272 DLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSL-EAYSYLMVIDDIWHK--------------EDWVSLKSAFPE--N 334 (919)
Q Consensus 272 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~--------------~~~~~l~~~l~~--~ 334 (919)
+++.... ... +..++.+.+.. ...+.+|++|+++.. ....+++..+.. .
T Consensus 522 ----~l~~~~v---------Ges-e~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~ 587 (733)
T TIGR01243 522 ----EILSKWV---------GES-EKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQE 587 (733)
T ss_pred ----HHhhccc---------CcH-HHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccC
Confidence 1111111 111 22333333333 556799999998632 012334444443 2
Q ss_pred CCCcEEEEEecchhhhhhc----CCCCceEecCCCChHhHHHHHHHHhccCCCC-chhhHHHHHHHHHHcCCcc
Q 036584 335 KIGSRVIITTRIKDVAERS----DDRNYVHELRFLRQDESWQLFCERAFRNSKA-EKGLENLGREMVQKCDGLP 403 (919)
Q Consensus 335 ~~gs~iivTtr~~~v~~~~----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~~~~~~I~~~~~G~P 403 (919)
..+.-||.||...+..... +-....+.++..+.++-.++|+.+....... ..+ ...+++.+.|.-
T Consensus 588 ~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 588 LSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred CCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 2344455566554432211 1122678899999999999997665332211 112 355777777754
No 182
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.26 E-value=0.041 Score=58.87 Aligned_cols=196 Identities=10% Similarity=0.006 Sum_probs=107.1
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccc--cccc-
Q 036584 213 DLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMT--ALED- 289 (919)
Q Consensus 213 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~--~~~~- 289 (919)
+.+.+.+..+. -...+.++|+.|+||+++|..++.-.- ..+-. ...+..-...+.+...-.... -.++
T Consensus 13 ~~l~~~~~~~r-l~hA~L~~G~~G~Gk~~lA~~~a~~ll-C~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~p~~ 83 (319)
T PRK06090 13 QNWKAGLDAGR-IPGALLLQSDEGLGVESLVELFSRALL-CQNYQ-------SEACGFCHSCELMQSGNHPDLHVIKPEK 83 (319)
T ss_pred HHHHHHHHcCC-cceeEeeECCCCCCHHHHHHHHHHHHc-CCCCC-------CCCCCCCHHHHHHHcCCCCCEEEEecCc
Confidence 34444444432 345889999999999999999876311 10000 000000011111111100000 0000
Q ss_pred -cccCCHHHHHHHHHHHh-----ccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecch-hhhhhcCCCCceE
Q 036584 290 -LETKTEEDLARSLRKSL-----EAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRIK-DVAERSDDRNYVH 360 (919)
Q Consensus 290 -~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~~~~ 360 (919)
......+++. .+.+.+ .++.-++|+|+++.. .....++..+-.-..++.+|++|.+. .+..-+.+....+
T Consensus 84 ~~~~I~vdqiR-~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~ 162 (319)
T PRK06090 84 EGKSITVEQIR-QCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQW 162 (319)
T ss_pred CCCcCCHHHHH-HHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeE
Confidence 0112233332 333333 344569999999854 46778888777666667777766654 4444444444789
Q ss_pred ecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 036584 361 ELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVLGGLLSTKRPQEWREVRNHIWRH 431 (919)
Q Consensus 361 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~~~~l~~~~~~~w~~~~~~~~~~ 431 (919)
.+.+++.+++.+.+.... . + ....++..++|.|+.+..+ +.....+.+......+...
T Consensus 163 ~~~~~~~~~~~~~L~~~~----~--~----~~~~~l~l~~G~p~~A~~~---~~~~~~~~~~~~~~~l~~~ 220 (319)
T PRK06090 163 VVTPPSTAQAMQWLKGQG----I--T----VPAYALKLNMGSPLKTLAM---MKEGGLEKYHKLERQLVDA 220 (319)
T ss_pred eCCCCCHHHHHHHHHHcC----C--c----hHHHHHHHcCCCHHHHHHH---hCCCcHHHHHHHHHHHHHH
Confidence 999999999999886542 1 1 1346788999999976554 3233344444444444433
No 183
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0087 Score=65.45 Aligned_cols=144 Identities=19% Similarity=0.272 Sum_probs=85.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHH
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRK 304 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 304 (919)
....+.+.|++|+|||+||..++. ...|..+--++-. ++-..++..-...+.+
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe-----------------------~miG~sEsaKc~~i~k 589 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPE-----------------------DMIGLSESAKCAHIKK 589 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChH-----------------------HccCccHHHHHHHHHH
Confidence 466888999999999999999986 3556544333221 2223344444444544
Q ss_pred Hh----ccCceEEEEecccchhHHHH------------HHhhCCCCC-CCcEE--EEEecchhhhhhcCCC---CceEec
Q 036584 305 SL----EAYSYLMVIDDIWHKEDWVS------------LKSAFPENK-IGSRV--IITTRIKDVAERSDDR---NYVHEL 362 (919)
Q Consensus 305 ~l----~~~~~LlVlDdv~~~~~~~~------------l~~~l~~~~-~gs~i--ivTtr~~~v~~~~~~~---~~~~~l 362 (919)
.+ +.+-..||+||+...-+|-. ++..+.... .|-|+ +-||-..++...++-. ...|.+
T Consensus 590 ~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~V 669 (744)
T KOG0741|consen 590 IFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHV 669 (744)
T ss_pred HHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeec
Confidence 44 44557999999976544433 233333322 24444 4466667777766532 267889
Q ss_pred CCCCh-HhHHHHHHHHh-ccCCCCchhhHHHHHHHHHHc
Q 036584 363 RFLRQ-DESWQLFCERA-FRNSKAEKGLENLGREMVQKC 399 (919)
Q Consensus 363 ~~L~~-~~~~~lf~~~~-~~~~~~~~~~~~~~~~I~~~~ 399 (919)
+.++. ++..+.++..- |. +.....++.+...+|
T Consensus 670 pnl~~~~~~~~vl~~~n~fs----d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 670 PNLTTGEQLLEVLEELNIFS----DDEVRAIAEQLLSKK 704 (744)
T ss_pred CccCchHHHHHHHHHccCCC----cchhHHHHHHHhccc
Confidence 99987 77777776543 32 223344455555555
No 184
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.25 E-value=0.0073 Score=63.46 Aligned_cols=53 Identities=23% Similarity=0.273 Sum_probs=34.4
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHH
Q 036584 213 DLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLL 274 (919)
Q Consensus 213 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 274 (919)
+++..++..+ ..|.|.|++|+|||+||+.+++ ..... .++++..+..+..+++
T Consensus 12 ~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~--~lg~~---~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 12 SRALRYLKSG----YPVHLRGPAGTGKTTLAMHVAR--KRDRP---VMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHH--HhCCC---EEEEeCCccCCHHHHh
Confidence 4444444443 3667999999999999999987 33333 4556666555544443
No 185
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.24 E-value=0.0013 Score=79.61 Aligned_cols=116 Identities=14% Similarity=0.158 Sum_probs=66.7
Q ss_pred CCccccccCHHHHHHHHhcC-------CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHH
Q 036584 203 ENPVGFEDDTDLLLAKLLDK-------EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLL 275 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 275 (919)
..++|.++.++.+.+.+... .....++.++|++|+|||+||+.++.. .. ...+.++.++-....
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l~---~~~~~~d~se~~~~~---- 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--LG---VHLERFDMSEYMEKH---- 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--hc---CCeEEEeCchhhhcc----
Confidence 46889999999988888742 112347899999999999999999983 32 234555554321111
Q ss_pred HHHHHhcccccccccccCCHHHHHHHHHHHhccC-ceEEEEecccch--hHHHHHHhhCCC
Q 036584 276 RIIKSFNIMTALEDLETKTEEDLARSLRKSLEAY-SYLMVIDDIWHK--EDWVSLKSAFPE 333 (919)
Q Consensus 276 ~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~LlVlDdv~~~--~~~~~l~~~l~~ 333 (919)
.+...++... .....+. ...+.+.++.+ ..+++||+++.. +.++.+...+..
T Consensus 525 ~~~~lig~~~---gyvg~~~---~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 525 TVSRLIGAPP---GYVGFEQ---GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred cHHHHhcCCC---CCcccch---hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 1111111111 1111111 12233444433 459999999854 456666665543
No 186
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.22 E-value=0.0017 Score=75.60 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=40.6
Q ss_pred CCCCccccccCHHHHHHHHhcCC---CCcEEEEEEecCCchHHHHHHHHHcc
Q 036584 201 VEENPVGFEDDTDLLLAKLLDKE---QRRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 201 ~~~~~vGr~~~~~~l~~~L~~~~---~~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
.-++++|-++.++++..++.... ...+++.|+|++|+||||+++.++..
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999987642 23468999999999999999999974
No 187
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.20 E-value=0.0056 Score=66.59 Aligned_cols=165 Identities=16% Similarity=0.030 Sum_probs=88.6
Q ss_pred ccc-cccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcc
Q 036584 205 PVG-FEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNI 283 (919)
Q Consensus 205 ~vG-r~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 283 (919)
++| -+..++.+...+..+. -.....++|+.|+||||+|+.+.+..--....... .+..-...+.+...-..
T Consensus 7 i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~~~~~hp 78 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRIDSGNHP 78 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHHhcCCCC
Confidence 455 4455566666665543 34577999999999999999987631111100000 00001111111110000
Q ss_pred cc--cccccccCCHHHHHHHHHHH----hccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecch-hhhhhcC
Q 036584 284 MT--ALEDLETKTEEDLARSLRKS----LEAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRIK-DVAERSD 354 (919)
Q Consensus 284 ~~--~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~ 354 (919)
.. -.++-.....+++.+.+... ..+.+-++|+|+++.. +..+.++..+..-..++.+|++|.+. .+...+.
T Consensus 79 D~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIr 158 (329)
T PRK08058 79 DVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTIL 158 (329)
T ss_pred CEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHH
Confidence 00 00000111223333222211 2345568999999754 45667888777666677777777653 3333333
Q ss_pred CCCceEecCCCChHhHHHHHHHH
Q 036584 355 DRNYVHELRFLRQDESWQLFCER 377 (919)
Q Consensus 355 ~~~~~~~l~~L~~~~~~~lf~~~ 377 (919)
.....+++.+++.++..+.+...
T Consensus 159 SRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 159 SRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred hhceeeeCCCCCHHHHHHHHHHc
Confidence 44478999999999998888653
No 188
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.19 E-value=0.0041 Score=75.65 Aligned_cols=176 Identities=15% Similarity=0.151 Sum_probs=95.2
Q ss_pred CCccccccCHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHH
Q 036584 203 ENPVGFEDDTDLLLAKLLDK-----------EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIK 271 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 271 (919)
+++.|.++.++++.+++... -...+.|.|+|++|+|||+||+.+++. ....| +.++.+
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~---i~i~~~------ 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF---ISINGP------ 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE---EEEecH------
Confidence 45789999999988877431 123457889999999999999999983 33222 222221
Q ss_pred HHHHHHHHHhcccccccccccCCHHHHHHHHHHHhccCceEEEEecccch-------------hHHHHHHhhCCCC-CCC
Q 036584 272 DLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHK-------------EDWVSLKSAFPEN-KIG 337 (919)
Q Consensus 272 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~l~~~-~~g 337 (919)
++ ..... ......+...+.......+.+|+||+++.. .....+...+... ..+
T Consensus 247 ~i----~~~~~---------g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~ 313 (733)
T TIGR01243 247 EI----MSKYY---------GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRG 313 (733)
T ss_pred HH----hcccc---------cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCC
Confidence 11 11000 011122223333333566789999998542 1123344444322 223
Q ss_pred cEEEE-Eecchh-hhhhcC---CCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchH
Q 036584 338 SRVII-TTRIKD-VAERSD---DRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLA 405 (919)
Q Consensus 338 s~iiv-Ttr~~~-v~~~~~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLa 405 (919)
..+|| ||...+ +..... -....+.+...+.++-.+++..+.-.... .+ ......+++.+.|.--+
T Consensus 314 ~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l-~~--d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 314 RVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL-AE--DVDLDKLAEVTHGFVGA 383 (733)
T ss_pred CEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC-cc--ccCHHHHHHhCCCCCHH
Confidence 34444 444332 111111 11256778888888888888755422111 11 11246688888887543
No 189
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.17 E-value=0.018 Score=61.70 Aligned_cols=178 Identities=10% Similarity=0.012 Sum_probs=99.1
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccccc-c-c-c
Q 036584 213 DLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTA-L-E-D 289 (919)
Q Consensus 213 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-~-~-~ 289 (919)
+.+.+.+..+. -.....++|+.|+||+++|..++.-.--..... ...+..-...+.+...-..... . + +
T Consensus 12 ~~l~~~~~~~r-l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~p~~ 83 (325)
T PRK06871 12 QQITQAFQQGL-GHHALLFKADSGLGTEQLIRALAQWLMCQTPQG-------DQPCGQCHSCHLFQAGNHPDFHILEPID 83 (325)
T ss_pred HHHHHHHHcCC-cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC-------CCCCCCCHHHHHHhcCCCCCEEEEcccc
Confidence 34455554432 245788999999999999999986311111000 0011111122222111100000 0 0 0
Q ss_pred cccCCHHHHHHHHHHHh-----ccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecch-hhhhhcCCCCceEe
Q 036584 290 LETKTEEDLARSLRKSL-----EAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRIK-DVAERSDDRNYVHE 361 (919)
Q Consensus 290 ~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~~~~~ 361 (919)
-.....+++. .+.+.+ .+++-++|+|+++.. .....++..+-.-..++.+|++|.+. .+..-+.+....+.
T Consensus 84 ~~~I~id~iR-~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~ 162 (325)
T PRK06871 84 NKDIGVDQVR-EINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWL 162 (325)
T ss_pred CCCCCHHHHH-HHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEe
Confidence 0111233333 333333 356678999999855 46778888877666677777777654 34433334447899
Q ss_pred cCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHH
Q 036584 362 LRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAI 406 (919)
Q Consensus 362 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal 406 (919)
+.+++.++..+.+...... . ...+...+..++|.|+.+
T Consensus 163 ~~~~~~~~~~~~L~~~~~~----~---~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 163 IHPPEEQQALDWLQAQSSA----E---ISEILTALRINYGRPLLA 200 (325)
T ss_pred CCCCCHHHHHHHHHHHhcc----C---hHHHHHHHHHcCCCHHHH
Confidence 9999999999988775421 1 112456778899999643
No 190
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0035 Score=69.62 Aligned_cols=173 Identities=15% Similarity=0.186 Sum_probs=97.5
Q ss_pred CCccccccCHHHHHHHHhcC----------CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHH
Q 036584 203 ENPVGFEDDTDLLLAKLLDK----------EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKD 272 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 272 (919)
.++=|.++.+.++.+++..- -...+-|.+||++|+|||.||+.+++ ...-.| +.++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAg--el~vPf-----~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAG--ELGVPF-----LSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhh--hcCCce-----Eeecch-----
Confidence 45668998888888877542 12456789999999999999999999 444343 344321
Q ss_pred HHHHHHHHhcccccccccccCCHHHHHHHHHHHhccCceEEEEecccchh---H----------HHHHHhhCCC---C-C
Q 036584 273 LLLRIIKSFNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHKE---D----------WVSLKSAFPE---N-K 335 (919)
Q Consensus 273 ~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---~----------~~~l~~~l~~---~-~ 335 (919)
+|+..+ .+.+++.+.+...+.-...++++++|+++... + ..+++..+.. . .
T Consensus 258 ---eivSGv---------SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~ 325 (802)
T KOG0733|consen 258 ---EIVSGV---------SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKT 325 (802)
T ss_pred ---hhhccc---------CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccccc
Confidence 222222 22334455555555557789999999997431 1 2233333332 1 1
Q ss_pred CCcEEEE---Eecchhhh---hhcCCCCceEecCCCChHhHHHHHHHHhccCCCC-chhhHHHHHHHHHHcCCcc
Q 036584 336 IGSRVII---TTRIKDVA---ERSDDRNYVHELRFLRQDESWQLFCERAFRNSKA-EKGLENLGREMVQKCDGLP 403 (919)
Q Consensus 336 ~gs~iiv---Ttr~~~v~---~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~~~~~~I~~~~~G~P 403 (919)
.|-.||| |+|...+- ...+-...-|.|.--+...-.+++...+-+-..+ .-+ .++|++.+-|.-
T Consensus 326 ~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d----~~qlA~lTPGfV 396 (802)
T KOG0733|consen 326 KGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFD----FKQLAKLTPGFV 396 (802)
T ss_pred CCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcC----HHHHHhcCCCcc
Confidence 1333333 44543332 2223333567777777776666766555332222 112 345666665553
No 191
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.009 Score=67.82 Aligned_cols=162 Identities=19% Similarity=0.198 Sum_probs=94.6
Q ss_pred CCCCccccccCHHHHHHHHhc----CCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHH
Q 036584 201 VEENPVGFEDDTDLLLAKLLD----KEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLR 276 (919)
Q Consensus 201 ~~~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 276 (919)
.+.+-+|.++-+++|++++.- +..+.++++.+|++|||||.+|+.+++ .....|- -++++.-.+..++
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkFf---RfSvGG~tDvAeI--- 480 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKFF---RFSVGGMTDVAEI--- 480 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCceE---EEeccccccHHhh---
Confidence 455789999999999999864 344678999999999999999999998 5666652 2355544443332
Q ss_pred HHHHhcccccccccccCCHHHHHHHHHHHhccCceEEEEecccch------hHHHHHHhhCC------------CCC-CC
Q 036584 277 IIKSFNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHK------EDWVSLKSAFP------------ENK-IG 337 (919)
Q Consensus 277 il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~------~~~~~l~~~l~------------~~~-~g 337 (919)
.++.. .-+..+ ...+++.|+.. +..+=|+.||.|+.. +--..++..+. +-. .=
T Consensus 481 -----kGHRR-TYVGAM-PGkiIq~LK~v-~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DL 552 (906)
T KOG2004|consen 481 -----KGHRR-TYVGAM-PGKIIQCLKKV-KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDL 552 (906)
T ss_pred -----cccce-eeeccC-ChHHHHHHHhh-CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccch
Confidence 11110 001111 12333333332 344568889999753 11223333222 111 13
Q ss_pred cEEEE-Eecch--hhhhhcCCCCceEecCCCChHhHHHHHHHHh
Q 036584 338 SRVII-TTRIK--DVAERSDDRNYVHELRFLRQDESWQLFCERA 378 (919)
Q Consensus 338 s~iiv-Ttr~~--~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 378 (919)
|+|++ +|-|. .+....-..-+.|++.+...+|-..+-.++.
T Consensus 553 SkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 553 SKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred hheEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 66754 44332 1221122222789999999998888877765
No 192
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.006 Score=66.74 Aligned_cols=148 Identities=16% Similarity=0.135 Sum_probs=83.0
Q ss_pred CCcccccc---CHHHHHHHHhcCC-------CCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHH
Q 036584 203 ENPVGFED---DTDLLLAKLLDKE-------QRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKD 272 (919)
Q Consensus 203 ~~~vGr~~---~~~~l~~~L~~~~-------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 272 (919)
.++-|-|+ |+++|+++|.++. .-.+-|.++|++|.|||-||+.++-+ ..-.| |...+..|+.
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE--A~VPF----F~~sGSEFdE-- 375 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE--AGVPF----FYASGSEFDE-- 375 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc--cCCCe----Eeccccchhh--
Confidence 35567665 5566788887652 23568899999999999999999974 22222 3344444331
Q ss_pred HHHHHHHHhcccccccccccCCHHH---HHHHHHHHh-ccCceEEEEecccch-------------hHHHHHHhhCCCCC
Q 036584 273 LLLRIIKSFNIMTALEDLETKTEED---LARSLRKSL-EAYSYLMVIDDIWHK-------------EDWVSLKSAFPENK 335 (919)
Q Consensus 273 ~~~~il~~l~~~~~~~~~~~~~~~~---~~~~l~~~l-~~~~~LlVlDdv~~~-------------~~~~~l~~~l~~~~ 335 (919)
+-... .++.|.+.- +..+++|++|.++.. +...+++..+....
T Consensus 376 --------------------m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~ 435 (752)
T KOG0734|consen 376 --------------------MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFK 435 (752)
T ss_pred --------------------hhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcC
Confidence 11112 222333332 456899999998742 23556666666543
Q ss_pred --CCcEEEEEecchhhhhhcC----CCCceEecCCCChHhHHHHHHHHh
Q 036584 336 --IGSRVIITTRIKDVAERSD----DRNYVHELRFLRQDESWQLFCERA 378 (919)
Q Consensus 336 --~gs~iivTtr~~~v~~~~~----~~~~~~~l~~L~~~~~~~lf~~~~ 378 (919)
.|--||-.|..++.....- .....+.++.-+..--.++|..+.
T Consensus 436 qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl 484 (752)
T KOG0734|consen 436 QNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYL 484 (752)
T ss_pred cCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHH
Confidence 3444444555444433321 111445555555444455555544
No 193
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.13 E-value=0.00017 Score=71.78 Aligned_cols=64 Identities=22% Similarity=0.281 Sum_probs=42.7
Q ss_pred hccCceEEEEEeccCcccccccccc--chhhhhhhcccccceEEeecCC--Cc--cccChh-------hhcCCCCcEEec
Q 036584 607 FERFFLLRVFDVEADLDRESTLMHW--SNRLSEKIGDLIHLKYLGLRNS--NI--GILPSS-------IVKLQRLQTLDF 673 (919)
Q Consensus 607 ~~~~~~LrvL~L~~~~~~~~~~i~~--~~~lp~~i~~L~~Lr~L~L~~~--~i--~~LP~~-------l~~L~~L~~L~L 673 (919)
+..+..+..+|||+ +. |.. ...+...|.+-.+|+..+++.- +. .++|++ +-+|++|++.+|
T Consensus 26 l~~~d~~~evdLSG-Nt-----igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~L 99 (388)
T COG5238 26 LEMMDELVEVDLSG-NT-----IGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDL 99 (388)
T ss_pred HHhhcceeEEeccC-Cc-----ccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeec
Confidence 44577888899999 55 432 1234455666788888888852 22 344443 457788999999
Q ss_pred CCC
Q 036584 674 SGD 676 (919)
Q Consensus 674 ~~~ 676 (919)
|.|
T Consensus 100 SDN 102 (388)
T COG5238 100 SDN 102 (388)
T ss_pred ccc
Confidence 988
No 194
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.12 E-value=0.0042 Score=59.84 Aligned_cols=148 Identities=18% Similarity=0.102 Sum_probs=73.2
Q ss_pred ccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccc-
Q 036584 209 EDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTAL- 287 (919)
Q Consensus 209 ~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~- 287 (919)
++..+.+.+.+..+. -...+.++|+.|+||+++|..+++..--...... ....-...+.+...-......
T Consensus 3 ~~~~~~L~~~~~~~~-l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~--------~c~~c~~c~~~~~~~~~d~~~~ 73 (162)
T PF13177_consen 3 EEIIELLKNLIKSGR-LPHALLFHGPSGSGKKTLALAFARALLCSNPNED--------PCGECRSCRRIEEGNHPDFIII 73 (162)
T ss_dssp HHHHHHHHHHHHCTC---SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT----------SSSHHHHHHHTT-CTTEEEE
T ss_pred HHHHHHHHHHHHcCC-cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC--------CCCCCHHHHHHHhccCcceEEE
Confidence 344555666665543 3447899999999999999999874111111100 000011111111110000000
Q ss_pred -ccc--ccCCHHHHHHHHHHHh-----ccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecchh-hhhhcCCC
Q 036584 288 -EDL--ETKTEEDLARSLRKSL-----EAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRIKD-VAERSDDR 356 (919)
Q Consensus 288 -~~~--~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~ 356 (919)
+.. .....+++. .+.+.+ .++.=++|+||++.. +.+..++..+-.-..++.+|++|.+.. +..-+...
T Consensus 74 ~~~~~~~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SR 152 (162)
T PF13177_consen 74 KPDKKKKSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSR 152 (162)
T ss_dssp ETTTSSSSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTT
T ss_pred ecccccchhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhh
Confidence 000 012233333 333333 245669999999864 567788877776667888988887664 33333333
Q ss_pred CceEecCCCC
Q 036584 357 NYVHELRFLR 366 (919)
Q Consensus 357 ~~~~~l~~L~ 366 (919)
...+.+.++|
T Consensus 153 c~~i~~~~ls 162 (162)
T PF13177_consen 153 CQVIRFRPLS 162 (162)
T ss_dssp SEEEEE----
T ss_pred ceEEecCCCC
Confidence 3566666654
No 195
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.10 E-value=0.006 Score=60.65 Aligned_cols=177 Identities=17% Similarity=0.187 Sum_probs=101.6
Q ss_pred cCCCCCCccccccCHHH---HHHHHhcC----CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCH
Q 036584 198 SFAVEENPVGFEDDTDL---LLAKLLDK----EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKI 270 (919)
Q Consensus 198 ~~~~~~~~vGr~~~~~~---l~~~L~~~----~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 270 (919)
+...-+++||.++.+.+ |.++|.++ +-..+-|..+|++|.|||-+|+.+++. .+..| +.+. .
T Consensus 116 ~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane--~kvp~-----l~vk----a 184 (368)
T COG1223 116 SDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANE--AKVPL-----LLVK----A 184 (368)
T ss_pred ccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcc--cCCce-----EEec----h
Confidence 33445678998877755 66777664 345788999999999999999999994 43332 2221 1
Q ss_pred HHHHHHHHHHhcccccccccccCCHHHHHHHHHHHh-ccCceEEEEecccch--------------hHHHHHHhhCCC--
Q 036584 271 KDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSL-EAYSYLMVIDDIWHK--------------EDWVSLKSAFPE-- 333 (919)
Q Consensus 271 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~--------------~~~~~l~~~l~~-- 333 (919)
.+++-+ ..+ +-...++.+.+.. +..++++++|.++.. +....++..+..
T Consensus 185 t~liGe---hVG-----------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~ 250 (368)
T COG1223 185 TELIGE---HVG-----------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK 250 (368)
T ss_pred HHHHHH---Hhh-----------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc
Confidence 111111 111 1122233333333 457899999998642 123344444543
Q ss_pred CCCCcEEEEEecchhhhhhc-CC-CCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCc
Q 036584 334 NKIGSRVIITTRIKDVAERS-DD-RNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGL 402 (919)
Q Consensus 334 ~~~gs~iivTtr~~~v~~~~-~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~ 402 (919)
.+.|...|-.|.+.++.... .. ..+-++..--+++|-.+++...+-.-..+ ...-.+.++++.+|+
T Consensus 251 eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plp---v~~~~~~~~~~t~g~ 318 (368)
T COG1223 251 ENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLP---VDADLRYLAAKTKGM 318 (368)
T ss_pred cCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCc---cccCHHHHHHHhCCC
Confidence 33455556666655544332 11 11567777778888888888876432222 111245566666665
No 196
>PRK08118 topology modulation protein; Reviewed
Probab=97.09 E-value=0.00025 Score=68.69 Aligned_cols=34 Identities=38% Similarity=0.637 Sum_probs=27.5
Q ss_pred EEEEEecCCchHHHHHHHHHcccCcc-CCCCEEEE
Q 036584 228 VISIYGMGGLGKTTLARKLYHNNDVK-NKFDYCAW 261 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~w 261 (919)
-|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58899999999999999999854443 45677776
No 197
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.09 E-value=0.0043 Score=62.89 Aligned_cols=36 Identities=33% Similarity=0.464 Sum_probs=30.2
Q ss_pred EEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeC
Q 036584 228 VISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVS 265 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 265 (919)
.++|+|..|.|||||+..+.. .....|..+++++-.
T Consensus 15 r~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~~ 50 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITPE 50 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEecC
Confidence 578999999999999999997 577788888777543
No 198
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.08 E-value=0.064 Score=58.52 Aligned_cols=208 Identities=15% Similarity=0.164 Sum_probs=128.9
Q ss_pred cccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHH-HHHHcccCccCCCCEEEEEEeCCC---CCHHHHHHHHHHHhcc
Q 036584 208 FEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLA-RKLYHNNDVKNKFDYCAWVSVSQD---YKIKDLLLRIIKSFNI 283 (919)
Q Consensus 208 r~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~il~~l~~ 283 (919)
|.+.+++|..||.+.. -..|.|.||-|.||+.|+ .++.++.+. +..+++.+- .+...+++.++.+++.
T Consensus 1 R~e~~~~L~~wL~e~~--~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~qvGY 72 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP--NTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLASQVGY 72 (431)
T ss_pred CchHHHHHHHHHhcCC--CeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHHhcCC
Confidence 5677899999999875 469999999999999999 788764222 666665432 3345666666666654
Q ss_pred cccc---------------------cccccCCHHHHHHHH-------HH-------------------Hhc---cCceEE
Q 036584 284 MTAL---------------------EDLETKTEEDLARSL-------RK-------------------SLE---AYSYLM 313 (919)
Q Consensus 284 ~~~~---------------------~~~~~~~~~~~~~~l-------~~-------------------~l~---~~~~Ll 313 (919)
-... ..+......++...| ++ +|+ .++=+|
T Consensus 73 ~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVV 152 (431)
T PF10443_consen 73 FPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVV 152 (431)
T ss_pred CcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEE
Confidence 2110 011122222332222 11 110 124589
Q ss_pred EEecccch-----------hHHHHHHhhCCCCCCCcEEEEEecchhhhhhc----CCCC-ceEecCCCChHhHHHHHHHH
Q 036584 314 VIDDIWHK-----------EDWVSLKSAFPENKIGSRVIITTRIKDVAERS----DDRN-YVHELRFLRQDESWQLFCER 377 (919)
Q Consensus 314 VlDdv~~~-----------~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~----~~~~-~~~~l~~L~~~~~~~lf~~~ 377 (919)
|+|+.-.. .+|...+. ..+-.+||+.|-+....... .... ..+.|...+.+.|..+...+
T Consensus 153 VIdnF~~k~~~~~~iy~~laeWAa~Lv----~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 153 VIDNFLHKAEENDFIYDKLAEWAASLV----QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred EEcchhccCcccchHHHHHHHHHHHHH----hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 99998532 23443322 23356788888765444332 2211 67899999999999999998
Q ss_pred hccCCCC-------------c-----hhhHHHHHHHHHHcCCcchHHHHHHHHhcCC-Ch-HHHHHHHHH
Q 036584 378 AFRNSKA-------------E-----KGLENLGREMVQKCDGLPLAIVVLGGLLSTK-RP-QEWREVRNH 427 (919)
Q Consensus 378 ~~~~~~~-------------~-----~~~~~~~~~I~~~~~G~PLal~~~~~~l~~~-~~-~~w~~~~~~ 427 (919)
....... . .....-....++.+||==.=+..+++.++.. ++ +...++.++
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~q 298 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIISQ 298 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 7543110 0 1244456778889999999999999999887 43 344455443
No 199
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.06 E-value=0.0023 Score=65.76 Aligned_cols=102 Identities=20% Similarity=0.219 Sum_probs=57.3
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHH-hccc-ccccccc
Q 036584 214 LLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKS-FNIM-TALEDLE 291 (919)
Q Consensus 214 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~-l~~~-~~~~~~~ 291 (919)
.+.+.|..+=....++.|+|.+|+|||++|.+++.. ....-..++|++.. .++.+.+ .+++.. .... ....-..
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~-~~~~~~~~~~~~~~~~~~~ 86 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF-KQIAGEDFEELLSNIIIFE 86 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH-HHHHhhChHhHhhCeEEEe
Confidence 344555444345679999999999999999999874 22334668999887 5554433 333332 1000 0000001
Q ss_pred cCCHH---HHHHHHHHHhccCceEEEEeccc
Q 036584 292 TKTEE---DLARSLRKSLEAYSYLMVIDDIW 319 (919)
Q Consensus 292 ~~~~~---~~~~~l~~~l~~~~~LlVlDdv~ 319 (919)
..+.. +..+.+.+.++.+.-++|+|.+.
T Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 87 PSSFEEQSEAIRKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred CCCHHHHHHHHHHHHHHHHhcccEEEEeCcH
Confidence 12222 23344444444566788888873
No 200
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.06 E-value=0.002 Score=65.48 Aligned_cols=97 Identities=18% Similarity=0.164 Sum_probs=55.6
Q ss_pred HhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHh-ccc-ccccccccCCH-
Q 036584 219 LLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSF-NIM-TALEDLETKTE- 295 (919)
Q Consensus 219 L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l-~~~-~~~~~~~~~~~- 295 (919)
|..+=....++.|+|++|+|||+++.+++.. ....-..++|++... ++...+. +++... ... ....-....+.
T Consensus 5 l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~-~~~~~~~~~~~~~i~~~~~~~~~ 80 (209)
T TIGR02237 5 LGGGVERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFK-QIAEDRPERALSNFIVFEVFDFD 80 (209)
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHH-HHHHhChHHHhcCEEEEECCCHH
Confidence 3343345689999999999999999998863 323346799999876 5554433 333332 000 00000011122
Q ss_pred --HHHHHHHHHHhcc-CceEEEEeccc
Q 036584 296 --EDLARSLRKSLEA-YSYLMVIDDIW 319 (919)
Q Consensus 296 --~~~~~~l~~~l~~-~~~LlVlDdv~ 319 (919)
......+.+.+.. +.-+||+|.+.
T Consensus 81 ~~~~~~~~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 81 EQGVAIQKTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHHHHHHHHhhcCccEEEEeCcH
Confidence 2234445555533 45688888874
No 201
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.04 E-value=0.0075 Score=65.98 Aligned_cols=144 Identities=19% Similarity=0.156 Sum_probs=83.0
Q ss_pred CccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccC-------------------CCCEEEEEEe
Q 036584 204 NPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKN-------------------KFDYCAWVSV 264 (919)
Q Consensus 204 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~wv~~ 264 (919)
.++|.+....++..+......-...+.++|++|+||||+|..++++..-.. ...-+..+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 456777778888888875443344699999999999999999987522111 1122344444
Q ss_pred CCCCC---HHHHHHHHHHHhcccccccccccCCHHHHHHHHHHHhccCceEEEEecccchh--HHHHHHhhCCCCCCCcE
Q 036584 265 SQDYK---IKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHKE--DWVSLKSAFPENKIGSR 339 (919)
Q Consensus 265 ~~~~~---~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ 339 (919)
+.... ..+.++++.+...... ..++.-++++|+++... .-..+...+-.....+.
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~--------------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESP--------------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCC--------------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 43322 1222222222221100 03567799999998653 34566666665566777
Q ss_pred EEEEecc-hhhhhhcCCCCceEecCCCCh
Q 036584 340 VIITTRI-KDVAERSDDRNYVHELRFLRQ 367 (919)
Q Consensus 340 iivTtr~-~~v~~~~~~~~~~~~l~~L~~ 367 (919)
+|++|.. ..+...+......+.+.+.+.
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~~~~ 170 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKPPSR 170 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCCchH
Confidence 8777763 334433333335666666333
No 202
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.02 E-value=1.6e-05 Score=89.06 Aligned_cols=184 Identities=21% Similarity=0.237 Sum_probs=81.1
Q ss_pred hhhhcccccceEEeecCCCccccChhhhcCC-CCcEEecCCCCCcccccCccccccccccccccccccc-cCCCCcCcCc
Q 036584 636 SEKIGDLIHLKYLGLRNSNIGILPSSIVKLQ-RLQTLDFSGDVGCPVELPIEINMMQELRHLIGNFKGT-LPIENLTNLQ 713 (919)
Q Consensus 636 p~~i~~L~~Lr~L~L~~~~i~~LP~~l~~L~-~L~~L~L~~~~~~~~~lp~~i~~L~~L~~L~~~~~~~-~~i~~l~~L~ 713 (919)
|-.|.....||.|.|+++.+... ..+..+. .|++|.-. ..+..|+|+.....+. ..--....|.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~-~GL~~lr~qLe~LIC~-------------~Sl~Al~~v~ascggd~~ns~~Wn~L~ 167 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA-KGLQELRHQLEKLICH-------------NSLDALRHVFASCGGDISNSPVWNKLA 167 (1096)
T ss_pred CceeccccceeeEEecCcchhhh-hhhHHHHHhhhhhhhh-------------ccHHHHHHHHHHhccccccchhhhhHh
Confidence 44566777788888888777542 2222222 24433221 1244555553211100 0000011222
Q ss_pred cccccccc-ccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCcCCCCC-CCCceeE
Q 036584 714 TLKYVQSK-SWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASLQPLSH-CQCLVDL 791 (919)
Q Consensus 714 ~L~~~~~~-~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L 791 (919)
+.+...|. ...-..+.-++.|+.|+++.|... .. ..+..+++|++|+|+ +|.+..++-+++ --.|+.|
T Consensus 168 ~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~----~v---~~Lr~l~~LkhLDls---yN~L~~vp~l~~~gc~L~~L 237 (1096)
T KOG1859|consen 168 TASFSYNRLVLMDESLQLLPALESLNLSHNKFT----KV---DNLRRLPKLKHLDLS---YNCLRHVPQLSMVGCKLQLL 237 (1096)
T ss_pred hhhcchhhHHhHHHHHHHHHHhhhhccchhhhh----hh---HHHHhcccccccccc---cchhccccccchhhhhheee
Confidence 22222222 122233444555666666655311 11 445556666666663 333322222222 1126666
Q ss_pred EEceecCCCCcchhccCCCcceEEEEccCCCC-CCchhhhcCCCCCeEEEeecc
Q 036584 792 RLSGRMKKLPEDMHVFLPNLECLSLSVPYPKE-DPMPALEMLPNLIILDLHFRC 844 (919)
Q Consensus 792 ~L~~~~~~~p~~~~~l~~~L~~L~L~~~~l~~-~~~~~l~~lp~L~~L~L~~~~ 844 (919)
.|++|.-.---.+..+ .+|+.|+|++|-+.+ .-+..+..|..|..|+|.||.
T Consensus 238 ~lrnN~l~tL~gie~L-ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 238 NLRNNALTTLRGIENL-KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred eecccHHHhhhhHHhh-hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 6666542212234444 666666666665443 123445555566666666543
No 203
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.00 E-value=0.013 Score=62.57 Aligned_cols=25 Identities=24% Similarity=0.496 Sum_probs=23.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
....+.|||++|+|||.+|+.++++
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999994
No 204
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.99 E-value=0.0037 Score=67.27 Aligned_cols=107 Identities=12% Similarity=0.040 Sum_probs=63.8
Q ss_pred CHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccC-CCCE-EEEEEeCCC-CCHHHHHHHHHHHhccccc-
Q 036584 211 DTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKN-KFDY-CAWVSVSQD-YKIKDLLLRIIKSFNIMTA- 286 (919)
Q Consensus 211 ~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-~f~~-~~wv~~~~~-~~~~~~~~~il~~l~~~~~- 286 (919)
...++++.+..-.. .+-+.|+|.+|+|||||++.+++. +.. +-+. ++|+.+.+. .+..++++.+...+.....
T Consensus 119 ~~~RvID~l~PiGk-GQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~d 195 (380)
T PRK12608 119 LSMRVVDLVAPIGK-GQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFD 195 (380)
T ss_pred hhHhhhhheeecCC-CceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCC
Confidence 34557777765332 345689999999999999999874 222 2233 467666655 4567777777776554221
Q ss_pred ccccccCCHHHHHHHHHHHh--ccCceEEEEecccc
Q 036584 287 LEDLETKTEEDLARSLRKSL--EAYSYLMVIDDIWH 320 (919)
Q Consensus 287 ~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~ 320 (919)
.+.............+.+++ ++++.+||+|++..
T Consensus 196 e~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 196 RPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 01111111111222333333 68999999999853
No 205
>PRK08181 transposase; Validated
Probab=96.99 E-value=0.00099 Score=69.47 Aligned_cols=36 Identities=17% Similarity=0.135 Sum_probs=26.5
Q ss_pred EEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEe
Q 036584 227 LVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSV 264 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 264 (919)
.-+.|+|++|+|||.||..+.+. ...+...++|+++
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~ 142 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT 142 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH
Confidence 35899999999999999999873 3223334566654
No 206
>PRK12377 putative replication protein; Provisional
Probab=96.99 E-value=0.0019 Score=66.55 Aligned_cols=38 Identities=24% Similarity=0.164 Sum_probs=29.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeC
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVS 265 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 265 (919)
...+.|+|.+|+|||+||..+++. .......++++++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~ 138 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP 138 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH
Confidence 457899999999999999999994 33333446777654
No 207
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.012 Score=66.53 Aligned_cols=172 Identities=17% Similarity=0.169 Sum_probs=91.3
Q ss_pred CccccccCHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHH
Q 036584 204 NPVGFEDDTDLLLAKLLDK-----------EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKD 272 (919)
Q Consensus 204 ~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 272 (919)
++=|.++-+.++.+.+.-+ -...+-|.+||+||+|||++|+.+++ ..+-+| +++..+ +
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF-----lsvkgp----E 503 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF-----LSVKGP----E 503 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCe-----eeccCH----H
Confidence 4445666666655444322 13577899999999999999999999 444444 333311 1
Q ss_pred HHHHHHHHhcccccccccccCCHHHHHHHHHHHh-ccCceEEEEecccchh-------------HHHHHHhhCCCCCCCc
Q 036584 273 LLLRIIKSFNIMTALEDLETKTEEDLARSLRKSL-EAYSYLMVIDDIWHKE-------------DWVSLKSAFPENKIGS 338 (919)
Q Consensus 273 ~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~-------------~~~~l~~~l~~~~~gs 338 (919)
+ ..... ... +..++.+.+.- +-.+.+|+||.++... ...+++..+.......
T Consensus 504 L----~sk~v---------GeS-Er~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k 569 (693)
T KOG0730|consen 504 L----FSKYV---------GES-ERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALK 569 (693)
T ss_pred H----HHHhc---------Cch-HHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccC
Confidence 1 11111 111 23333333333 4567899999987431 2334455555433333
Q ss_pred EEE-E--Eecchhhhhhc-CC--CCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcc
Q 036584 339 RVI-I--TTRIKDVAERS-DD--RNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLP 403 (919)
Q Consensus 339 ~ii-v--Ttr~~~v~~~~-~~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 403 (919)
.|+ | |-|...+-..+ .+ ....+-++.-+.+.-.++|+.++-.....+. --..+|++++.|.-
T Consensus 570 ~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~---vdl~~La~~T~g~S 637 (693)
T KOG0730|consen 570 NVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSED---VDLEELAQATEGYS 637 (693)
T ss_pred cEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCcc---ccHHHHHHHhccCC
Confidence 333 3 33433332222 11 2256667777777778899988755433222 11344555555543
No 208
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0044 Score=72.09 Aligned_cols=177 Identities=15% Similarity=0.144 Sum_probs=107.0
Q ss_pred CCccccccCH---HHHHHHHhcCC-------CCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHH
Q 036584 203 ENPVGFEDDT---DLLLAKLLDKE-------QRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKD 272 (919)
Q Consensus 203 ~~~vGr~~~~---~~l~~~L~~~~-------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 272 (919)
.++.|-|+.+ ++++++|.+++ .-++-|.++|++|+|||-||+.++-. .. +-|++++.. +
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGE--Ag-----VPF~svSGS----E 379 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AG-----VPFFSVSGS----E 379 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcc--cC-----CceeeechH----H
Confidence 4677876555 55566666542 23567899999999999999999983 22 334555422 1
Q ss_pred HHHHHHHHhcccccccccccCCHHHHHHHHHHHh-ccCceEEEEecccch-----------------hHHHHHHhhCCCC
Q 036584 273 LLLRIIKSFNIMTALEDLETKTEEDLARSLRKSL-EAYSYLMVIDDIWHK-----------------EDWVSLKSAFPEN 334 (919)
Q Consensus 273 ~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~-----------------~~~~~l~~~l~~~ 334 (919)
.++.+.+ .. ...++.|.... ...+..|.+|+++.. ..+.+++..+...
T Consensus 380 ----FvE~~~g---------~~-asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf 445 (774)
T KOG0731|consen 380 ----FVEMFVG---------VG-ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGF 445 (774)
T ss_pred ----HHHHhcc---------cc-hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCC
Confidence 1111110 00 23344444444 467889999988631 2456666666655
Q ss_pred CCCcEEE-E-Eecchhhhhhc----CCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHH
Q 036584 335 KIGSRVI-I-TTRIKDVAERS----DDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAI 406 (919)
Q Consensus 335 ~~gs~ii-v-Ttr~~~v~~~~----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal 406 (919)
..+..|| + +|...++.... +-....+.++.-+.....++|+.|+...... .+..++.+ |+..+-|.+=|.
T Consensus 446 ~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 446 ETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred cCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHHH
Confidence 4444333 3 45544443321 1122678888888899999999888654432 34455666 899998888654
No 209
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.98 E-value=0.0003 Score=83.14 Aligned_cols=103 Identities=23% Similarity=0.283 Sum_probs=76.1
Q ss_pred CCeeEEEEecCCC-Ccccc---ccCCCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchh
Q 036584 559 SSCRRQAIYSHSP-SYFWL---HHGNSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNR 634 (919)
Q Consensus 559 ~~~r~l~l~~~~~-~~~~~---~~~~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~ 634 (919)
.++|||.+.+... ..-|. ...+|.||+|.+.+- ......+...+.+|++|+.||+|+ ++ +. .
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-----~~~~~dF~~lc~sFpNL~sLDIS~-Tn-----I~---n 187 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-----QFDNDDFSQLCASFPNLRSLDISG-TN-----IS---N 187 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-----eecchhHHHHhhccCccceeecCC-CC-----cc---C
Confidence 4566776653211 11121 233999999999997 222334567789999999999999 88 76 4
Q ss_pred hhhhhcccccceEEeecCCCccccC--hhhhcCCCCcEEecCCC
Q 036584 635 LSEKIGDLIHLKYLGLRNSNIGILP--SSIVKLQRLQTLDFSGD 676 (919)
Q Consensus 635 lp~~i~~L~~Lr~L~L~~~~i~~LP--~~l~~L~~L~~L~L~~~ 676 (919)
+ ..++.|++|+.|.+++=.+..-+ ..+-+|++|++||+|..
T Consensus 188 l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 188 L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 5 78999999999999997775433 36788999999999987
No 210
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.96 E-value=0.0033 Score=65.20 Aligned_cols=103 Identities=17% Similarity=0.218 Sum_probs=58.5
Q ss_pred HHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCC----CCEEEEEEeCCCCCHHHHHHHHHHHhcccccc----
Q 036584 216 LAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNK----FDYCAWVSVSQDYKIKDLLLRIIKSFNIMTAL---- 287 (919)
Q Consensus 216 ~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~---- 287 (919)
.+.|..+=....++.|+|.+|+|||+||.+++........ -..++|++....++... +.++++........
T Consensus 9 D~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~r-l~~~~~~~~~~~~~~~~~ 87 (235)
T cd01123 9 DELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPER-LVQIAERFGLDPEEVLDN 87 (235)
T ss_pred HhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHH-HHHHHHHhccChHhHhcC
Confidence 3344444345679999999999999999999753222221 36799999888776543 34444443321100
Q ss_pred -cccccCCHH---HHHHHHHHHh-cc-CceEEEEeccc
Q 036584 288 -EDLETKTEE---DLARSLRKSL-EA-YSYLMVIDDIW 319 (919)
Q Consensus 288 -~~~~~~~~~---~~~~~l~~~l-~~-~~~LlVlDdv~ 319 (919)
.-....+.+ .....+.+.+ +. +.-+||+|.+.
T Consensus 88 i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 88 IYVARAYNSDHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred EEEEecCCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 000111222 2334444444 33 56688888874
No 211
>PHA00729 NTP-binding motif containing protein
Probab=96.95 E-value=0.0046 Score=61.98 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=25.1
Q ss_pred HHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcc
Q 036584 215 LLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 215 l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
+++.+...+ ..-|.|.|.+|+||||||..+.+.
T Consensus 8 ~~~~l~~~~--f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 8 IVSAYNNNG--FVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred HHHHHhcCC--eEEEEEECCCCCCHHHHHHHHHHH
Confidence 344444433 457899999999999999999983
No 212
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.94 E-value=0.032 Score=63.59 Aligned_cols=170 Identities=14% Similarity=0.071 Sum_probs=108.7
Q ss_pred CCCCccccccCHHHHHHHHhcC--C-CCcEEEEEEecCCchHHHHHHHHHcccC------ccCCCCEEEEEEeCCCCCHH
Q 036584 201 VEENPVGFEDDTDLLLAKLLDK--E-QRRLVISIYGMGGLGKTTLARKLYHNND------VKNKFDYCAWVSVSQDYKIK 271 (919)
Q Consensus 201 ~~~~~vGr~~~~~~l~~~L~~~--~-~~~~vv~I~G~~GiGKTtLa~~v~~~~~------~~~~f~~~~wv~~~~~~~~~ 271 (919)
.+..+-+|+.+..+|.+++... + .....+.|.|-+|.|||+.+..|.+... --..|+ .+.|+.-.-....
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~ 472 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPR 472 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHH
Confidence 3456789999999999988753 2 3455999999999999999999998421 233454 4566666666789
Q ss_pred HHHHHHHHHhcccccccccccCCHHHHHHHHHHHhc-----cCceEEEEecccchhH--HHHHHhhCCC-CCCCcEEEEE
Q 036584 272 DLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSLE-----AYSYLMVIDDIWHKED--WVSLKSAFPE-NKIGSRVIIT 343 (919)
Q Consensus 272 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~~~--~~~l~~~l~~-~~~gs~iivT 343 (919)
++...|..++.+.. .......+.|..++. .+..++++|+++..-. -+-+...|.+ ..++||++|-
T Consensus 473 ~~Y~~I~~~lsg~~-------~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi 545 (767)
T KOG1514|consen 473 EIYEKIWEALSGER-------VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVI 545 (767)
T ss_pred HHHHHHHHhcccCc-------ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEE
Confidence 99999999998743 233455555665553 4568999999864421 1223333333 3457777665
Q ss_pred ecch-----------hhhhhcCCCCceEecCCCChHhHHHHHHHHhcc
Q 036584 344 TRIK-----------DVAERSDDRNYVHELRFLRQDESWQLFCERAFR 380 (919)
Q Consensus 344 tr~~-----------~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~ 380 (919)
+-.. .++..++. ..+...+.+.++-.++...+..+
T Consensus 546 ~IaNTmdlPEr~l~nrvsSRlg~--tRi~F~pYth~qLq~Ii~~RL~~ 591 (767)
T KOG1514|consen 546 AIANTMDLPERLLMNRVSSRLGL--TRICFQPYTHEQLQEIISARLKG 591 (767)
T ss_pred EecccccCHHHHhccchhhhccc--eeeecCCCCHHHHHHHHHHhhcc
Confidence 4211 11222221 45666777777766666555433
No 213
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.94 E-value=0.0063 Score=62.61 Aligned_cols=105 Identities=15% Similarity=0.155 Sum_probs=60.5
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccC----CCCEEEEEEeCCCCCHHHHHHHHHHHhccccc---
Q 036584 214 LLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKN----KFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTA--- 286 (919)
Q Consensus 214 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~--- 286 (919)
.+.+.|..+=....++.|+|.+|+|||+||..++....... .=..++|++....++...+ .++.........
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl-~~~~~~~~~~~~~~~ 85 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERL-VQLAVRFGLDPEEVL 85 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHH-HHHHHHhccchhhhh
Confidence 34444444434567999999999999999999976321111 1156789998877765443 333333221100
Q ss_pred --ccccccCCHHHHHHHHHHHhc----cCceEEEEeccc
Q 036584 287 --LEDLETKTEEDLARSLRKSLE----AYSYLMVIDDIW 319 (919)
Q Consensus 287 --~~~~~~~~~~~~~~~l~~~l~----~~~~LlVlDdv~ 319 (919)
..-....+.+++...+.+... .+.-|+|+|.+.
T Consensus 86 ~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 86 DNIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred ccEEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 001122344555555555442 345589999974
No 214
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.89 E-value=0.032 Score=60.49 Aligned_cols=179 Identities=9% Similarity=0.009 Sum_probs=98.3
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccccc--cccc
Q 036584 213 DLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTA--LEDL 290 (919)
Q Consensus 213 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~--~~~~ 290 (919)
+++.+.+..+. -...+.++|+.|+||+++|..++.-.--...-+ ...+..-...+.+...-..... .++.
T Consensus 12 ~~l~~~~~~~r-l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~p~~ 83 (334)
T PRK07993 12 EQLVGSYQAGR-GHHALLIQALPGMGDDALIYALSRWLMCQQPQG-------HKSCGHCRGCQLMQAGTHPDYYTLTPEK 83 (334)
T ss_pred HHHHHHHHcCC-cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCC-------CCCCCCCHHHHHHHcCCCCCEEEEeccc
Confidence 45555555432 345788999999999999999876311000000 0001101111111110000000 0000
Q ss_pred --ccCCHHHHHHHHHHHh-----ccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecch-hhhhhcCCCCceE
Q 036584 291 --ETKTEEDLARSLRKSL-----EAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRIK-DVAERSDDRNYVH 360 (919)
Q Consensus 291 --~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~~~~ 360 (919)
..-..+++.+ +.+.+ .+++-++|+|+++.. +....++..+-.-..++.+|++|.+. .+..-+.+....+
T Consensus 84 ~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~ 162 (334)
T PRK07993 84 GKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLH 162 (334)
T ss_pred ccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccc
Confidence 1122333332 33333 356679999999854 45677887777666677777777654 3443333334678
Q ss_pred ecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHH
Q 036584 361 ELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIV 407 (919)
Q Consensus 361 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~ 407 (919)
.+.+++.+++.+.+..... . + .+.+..++..++|.|..+.
T Consensus 163 ~~~~~~~~~~~~~L~~~~~---~-~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 163 YLAPPPEQYALTWLSREVT---M-S---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred cCCCCCHHHHHHHHHHccC---C-C---HHHHHHHHHHcCCCHHHHH
Confidence 9999999999988865421 1 1 1235678899999996443
No 215
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.88 E-value=3.6e-05 Score=86.23 Aligned_cols=102 Identities=20% Similarity=0.254 Sum_probs=55.3
Q ss_pred hhccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccCh-hhhcCCCCcEEecCCCCCcccccC
Q 036584 606 LFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILPS-SIVKLQRLQTLDFSGDVGCPVELP 684 (919)
Q Consensus 606 ~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~-~l~~L~~L~~L~L~~~~~~~~~lp 684 (919)
.+.-++.|+.|||++ |. +. +. .++..|++|+.|||++|.+..+|. +...+. |+.|++++| .+..|-
T Consensus 182 SLqll~ale~LnLsh-Nk-----~~---~v-~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN--~l~tL~ 248 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSH-NK-----FT---KV-DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN--ALTTLR 248 (1096)
T ss_pred HHHHHHHhhhhccch-hh-----hh---hh-HHHHhcccccccccccchhccccccchhhhh-heeeeeccc--HHHhhh
Confidence 344455666666666 55 54 33 256666666666666666666665 233333 666666666 454443
Q ss_pred cccccccccccccccc------ccccCCCCcCcCccccccccc
Q 036584 685 IEINMMQELRHLIGNF------KGTLPIENLTNLQTLKYVQSK 721 (919)
Q Consensus 685 ~~i~~L~~L~~L~~~~------~~~~~i~~l~~L~~L~~~~~~ 721 (919)
+|.+|++|++|+... ....++..|..|..|++-+|.
T Consensus 249 -gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 249 -GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred -hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 356666666663211 111224455555555555554
No 216
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.88 E-value=0.0072 Score=58.39 Aligned_cols=40 Identities=33% Similarity=0.494 Sum_probs=30.5
Q ss_pred EEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCC
Q 036584 228 VISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYK 269 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 269 (919)
++.|+|++|+||||++..++.. ....-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 3689999999999999999874 333345688888776543
No 217
>PRK06526 transposase; Provisional
Probab=96.87 E-value=0.0015 Score=67.71 Aligned_cols=23 Identities=35% Similarity=0.277 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHHcc
Q 036584 227 LVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
.-+.|+|++|+|||+||..+.+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHH
Confidence 46899999999999999999874
No 218
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.85 E-value=0.0044 Score=63.68 Aligned_cols=112 Identities=17% Similarity=0.174 Sum_probs=58.4
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccC
Q 036584 214 LLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETK 293 (919)
Q Consensus 214 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~ 293 (919)
.+.++..........+.++|.+|+|||+||..+++.. ...-..++++++ .+++..+-..... . ..
T Consensus 87 ~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l--~~~g~~v~~it~------~~l~~~l~~~~~~-~------~~ 151 (244)
T PRK07952 87 KARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNEL--LLRGKSVLIITV------ADIMSAMKDTFSN-S------ET 151 (244)
T ss_pred HHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEH------HHHHHHHHHHHhh-c------cc
Confidence 3344443322234578999999999999999999853 222345666644 3444443333211 0 11
Q ss_pred CHHHHHHHHHHHhccCceEEEEecccch--hHHHH--HHhhCCC-CCCCcEEEEEec
Q 036584 294 TEEDLARSLRKSLEAYSYLMVIDDIWHK--EDWVS--LKSAFPE-NKIGSRVIITTR 345 (919)
Q Consensus 294 ~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~--l~~~l~~-~~~gs~iivTtr 345 (919)
+.. .+.+.+. +.=+|||||+... .+|.. +...+.. -.....+||||.
T Consensus 152 ~~~----~~l~~l~-~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSN 203 (244)
T PRK07952 152 SEE----QLLNDLS-NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTN 203 (244)
T ss_pred cHH----HHHHHhc-cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCC
Confidence 112 2333344 3448889999643 34543 2222221 111234677775
No 219
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.82 E-value=0.0042 Score=67.71 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=16.2
Q ss_pred cccceeEEe-cCCcccEEEccCCcccccceEEcc
Q 036584 858 PLLEILQLD-ADGLVEWQVEEGAMPVLRGLKIAA 890 (919)
Q Consensus 858 ~~L~~L~l~-~~~l~~~~~~~~~~p~L~~L~l~~ 890 (919)
++|++|.+. |..+ .++ ....++|+.|.++.
T Consensus 156 sSLk~L~Is~c~~i-~LP--~~LP~SLk~L~ls~ 186 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILP--EKLPESLQSITLHI 186 (426)
T ss_pred CcccEEEecCCCcc-cCc--ccccccCcEEEecc
Confidence 467777777 4432 222 12234777777765
No 220
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.81 E-value=0.012 Score=72.34 Aligned_cols=118 Identities=13% Similarity=0.145 Sum_probs=65.5
Q ss_pred CCccccccCHHHHHHHHhcC-------CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHH
Q 036584 203 ENPVGFEDDTDLLLAKLLDK-------EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLL 275 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 275 (919)
..++|.+..++.+...+... +....++.++|++|+|||++|+.+++. .-..-...+.+.++.-.. ..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~-~~--- 641 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFME-KH--- 641 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhh-hh---
Confidence 46889999999988888642 112347899999999999999999873 211222334454442211 11
Q ss_pred HHHHHhcccccccccccCCHHHHHHHHHHHhccC-ceEEEEecccc--hhHHHHHHhhCC
Q 036584 276 RIIKSFNIMTALEDLETKTEEDLARSLRKSLEAY-SYLMVIDDIWH--KEDWVSLKSAFP 332 (919)
Q Consensus 276 ~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~LlVlDdv~~--~~~~~~l~~~l~ 332 (919)
....+.+..+ .....+.. ..+.+.++.+ .-+|+|||+.. .+.+..+...+.
T Consensus 642 -~~~~LiG~~p--gy~g~~~~---g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile 695 (857)
T PRK10865 642 -SVSRLVGAPP--GYVGYEEG---GYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLD 695 (857)
T ss_pred -hHHHHhCCCC--cccccchh---HHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHh
Confidence 1122222111 11111111 1233334333 36999999974 355666666554
No 221
>PRK09183 transposase/IS protein; Provisional
Probab=96.78 E-value=0.0039 Score=65.17 Aligned_cols=23 Identities=39% Similarity=0.408 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHHcc
Q 036584 227 LVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..+.|+|++|+|||+||..+.+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 46789999999999999999763
No 222
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.78 E-value=0.019 Score=70.71 Aligned_cols=132 Identities=15% Similarity=0.204 Sum_probs=74.0
Q ss_pred CCccccccCHHHHHHHHhcCC-------CCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHH
Q 036584 203 ENPVGFEDDTDLLLAKLLDKE-------QRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLL 275 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 275 (919)
..++|.+..++.+...+.... ....++.++|++|+|||++|+.+... ....-...+.++++.-.... ...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~-~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKH-SVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccc-hHH
Confidence 468999999999999887521 12457889999999999999999973 22222234445554322211 111
Q ss_pred HHHHHhcccccccccccCCHHHHHHHHHHHhccCc-eEEEEecccch--hHHHHHHhhCCCC-----------CCCcEEE
Q 036584 276 RIIKSFNIMTALEDLETKTEEDLARSLRKSLEAYS-YLMVIDDIWHK--EDWVSLKSAFPEN-----------KIGSRVI 341 (919)
Q Consensus 276 ~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~LlVlDdv~~~--~~~~~l~~~l~~~-----------~~gs~ii 341 (919)
.+ ++.+. .....+. ...+.+.++.++ .+|+||++... +.+..+...+..+ -..+-||
T Consensus 642 ~l---~g~~~---g~~g~~~---~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI 712 (852)
T TIGR03346 642 RL---IGAPP---GYVGYEE---GGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVII 712 (852)
T ss_pred Hh---cCCCC---CccCccc---ccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEE
Confidence 11 11111 1001100 112333333333 48999999854 4567776666432 1234477
Q ss_pred EEecc
Q 036584 342 ITTRI 346 (919)
Q Consensus 342 vTtr~ 346 (919)
+||..
T Consensus 713 ~TSn~ 717 (852)
T TIGR03346 713 MTSNL 717 (852)
T ss_pred EeCCc
Confidence 77764
No 223
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.77 E-value=0.0087 Score=61.18 Aligned_cols=61 Identities=23% Similarity=0.205 Sum_probs=40.4
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 036584 214 LLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRII 278 (919)
Q Consensus 214 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 278 (919)
.+...|..+=....++.|.|.+|+||||+|.+++.. ....-..++|++....+. +.+++++
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~--~~~~~~~ 67 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS--ERFRQIA 67 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH--HHHHHHH
Confidence 344445444345679999999999999999999873 222334578888765554 3344443
No 224
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.72 E-value=0.00036 Score=62.37 Aligned_cols=88 Identities=18% Similarity=0.295 Sum_probs=64.2
Q ss_pred cccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccChh
Q 036584 582 LARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILPSS 661 (919)
Q Consensus 582 ~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~ 661 (919)
++.+..++++ .+..+.+.+..+++.+..|+|++ +. +. ++|.++..++.||.|++++|.+...|..
T Consensus 54 el~~i~ls~N------~fk~fp~kft~kf~t~t~lNl~~-ne-----is---dvPeE~Aam~aLr~lNl~~N~l~~~p~v 118 (177)
T KOG4579|consen 54 ELTKISLSDN------GFKKFPKKFTIKFPTATTLNLAN-NE-----IS---DVPEELAAMPALRSLNLRFNPLNAEPRV 118 (177)
T ss_pred eEEEEecccc------hhhhCCHHHhhccchhhhhhcch-hh-----hh---hchHHHhhhHHhhhcccccCccccchHH
Confidence 4455555555 12334445556777888888888 77 77 7888888888888888888888888888
Q ss_pred hhcCCCCcEEecCCCCCcccccCcc
Q 036584 662 IVKLQRLQTLDFSGDVGCPVELPIE 686 (919)
Q Consensus 662 l~~L~~L~~L~L~~~~~~~~~lp~~ 686 (919)
+..|.+|-.|+..+| ....+|-.
T Consensus 119 i~~L~~l~~Lds~~n--a~~eid~d 141 (177)
T KOG4579|consen 119 IAPLIKLDMLDSPEN--ARAEIDVD 141 (177)
T ss_pred HHHHHhHHHhcCCCC--ccccCcHH
Confidence 888888888888877 66666654
No 225
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.72 E-value=0.034 Score=57.79 Aligned_cols=174 Identities=16% Similarity=0.123 Sum_probs=97.8
Q ss_pred CCCCccccccCHHHHHHHHhcC--CCCcEEEEEEecCCchHHHHHHHHHcc-cCccCCCCEEEEEEeCCCCC-HHHHHHH
Q 036584 201 VEENPVGFEDDTDLLLAKLLDK--EQRRLVISIYGMGGLGKTTLARKLYHN-NDVKNKFDYCAWVSVSQDYK-IKDLLLR 276 (919)
Q Consensus 201 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~~GiGKTtLa~~v~~~-~~~~~~f~~~~wv~~~~~~~-~~~~~~~ 276 (919)
+...++|-.++...+..++... .+...-|.|+|+.|.|||+|...+..+ .++.++ .+-|....... ..-.++.
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~---~l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGEN---FLLVRLNGELQTDKIALKG 98 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCe---EEEEEECccchhhHHHHHH
Confidence 3456888888888888888653 122457889999999999998888775 223333 33344433322 2335666
Q ss_pred HHHHhcccccccccccCCHHHHHHHHHHHhc------cCceEEEEecccch-----hH--HHHHHhhCCCCCCCcEEEEE
Q 036584 277 IIKSFNIMTALEDLETKTEEDLARSLRKSLE------AYSYLMVIDDIWHK-----ED--WVSLKSAFPENKIGSRVIIT 343 (919)
Q Consensus 277 il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~------~~~~LlVlDdv~~~-----~~--~~~l~~~l~~~~~gs~iivT 343 (919)
|.+|+............+..+....+.+.|+ +-+..+|+|.++-- +. +.-+...-....+-|-|-+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 6666654322112222333444555555553 22467778877522 11 11111111123445666788
Q ss_pred ecchh-------hhhhcCCCCceEecCCCChHhHHHHHHHHh
Q 036584 344 TRIKD-------VAERSDDRNYVHELRFLRQDESWQLFCERA 378 (919)
Q Consensus 344 tr~~~-------v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 378 (919)
||-.- |-...... .++-++.++-++...++++..
T Consensus 179 trld~lE~LEKRVKSRFshr-~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHR-VIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccccHHHHHHHHHHhhcccc-eeeccCCCChHHHHHHHHHHh
Confidence 88532 22222222 356677788888888887765
No 226
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.71 E-value=0.0069 Score=60.24 Aligned_cols=90 Identities=21% Similarity=0.198 Sum_probs=51.1
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCC-CCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQD-YKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRK 304 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 304 (919)
++||.++|+.|+||||.+.+++.....+ -..+..++.... ....+-++...+.++.+..... ...+..++.....+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~-~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVAR-TESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESS-TTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhh-cchhhHHHHHHHHH
Confidence 3699999999999999887777643323 334677776432 3445667777777775422111 12233344433333
Q ss_pred HhccC-ceEEEEecc
Q 036584 305 SLEAY-SYLMVIDDI 318 (919)
Q Consensus 305 ~l~~~-~~LlVlDdv 318 (919)
.++.+ .=++++|-.
T Consensus 78 ~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHTTSSEEEEEE-
T ss_pred HHhhcCCCEEEEecC
Confidence 33333 347778866
No 227
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.71 E-value=0.0088 Score=67.39 Aligned_cols=188 Identities=16% Similarity=0.142 Sum_probs=112.0
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFN 282 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 282 (919)
+++||-+.-...|...+..+. -..--...|+-|+||||+|+-++.-.--.. | ...+++..-...++|...-.
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhhcCCc
Confidence 467999888888888887753 233556889999999999999986311111 1 12223333334444433310
Q ss_pred ccccccccc---cCCHHHHHHHHHHHh-----ccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecch-hhhh
Q 036584 283 IMTALEDLE---TKTEEDLARSLRKSL-----EAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRIK-DVAE 351 (919)
Q Consensus 283 ~~~~~~~~~---~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~ 351 (919)
.+.-+++ ....++. +.|.+.. +++.-+.|+|+|+.. ..|..++..+-.-....+.|+.|.+. .+..
T Consensus 88 --~DviEiDaASn~gVddi-R~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~ 164 (515)
T COG2812 88 --IDVIEIDAASNTGVDDI-REIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPN 164 (515)
T ss_pred --ccchhhhhhhccChHHH-HHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCch
Confidence 0000111 1112222 2333322 455569999999854 67889888887666666666666544 4443
Q ss_pred hcCCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcc
Q 036584 352 RSDDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLP 403 (919)
Q Consensus 352 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 403 (919)
-+-+....|.++.++.++-...+...+..... ....+....|++..+|..
T Consensus 165 TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I--~~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 165 TILSRCQRFDFKRLDLEEIAKHLAAILDKEGI--NIEEDALSLIARAAEGSL 214 (515)
T ss_pred hhhhccccccccCCCHHHHHHHHHHHHHhcCC--ccCHHHHHHHHHHcCCCh
Confidence 33344478999999999888888776644332 223345566777777654
No 228
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.015 Score=57.27 Aligned_cols=149 Identities=19% Similarity=0.259 Sum_probs=87.4
Q ss_pred ccc-cccCHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHH
Q 036584 205 PVG-FEDDTDLLLAKLLDK-----------EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKD 272 (919)
Q Consensus 205 ~vG-r~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 272 (919)
+|| .++.+++|.+.+.-+ =.+.+-|.++|++|.|||-||+.|+++ .+..|+.+|.. +
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgs----e 216 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGS----E 216 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechH----H
Confidence 443 466666666655432 124678899999999999999999973 34566777642 2
Q ss_pred HHHHHHHHhcccccccccccCCHHHHHHHHHHHh-ccCceEEEEecccch-------------h---HHHHHHhhCCC--
Q 036584 273 LLLRIIKSFNIMTALEDLETKTEEDLARSLRKSL-EAYSYLMVIDDIWHK-------------E---DWVSLKSAFPE-- 333 (919)
Q Consensus 273 ~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~-------------~---~~~~l~~~l~~-- 333 (919)
+....+.. -...++.|.-.. ...+..|+.|.+++. + ..-+++..+..
T Consensus 217 lvqk~ige--------------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfe 282 (404)
T KOG0728|consen 217 LVQKYIGE--------------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFE 282 (404)
T ss_pred HHHHHhhh--------------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccc
Confidence 22221111 012333333333 456788999998743 1 12234444543
Q ss_pred CCCCcEEEEEecchhhhhhc--CC--CCceEecCCCChHhHHHHHHHHh
Q 036584 334 NKIGSRVIITTRIKDVAERS--DD--RNYVHELRFLRQDESWQLFCERA 378 (919)
Q Consensus 334 ~~~gs~iivTtr~~~v~~~~--~~--~~~~~~l~~L~~~~~~~lf~~~~ 378 (919)
..+.-+||.+|..-++.... .+ ....++.++-+.+.-.++++-+.
T Consensus 283 atknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 283 ATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred cccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 23567888877655554322 11 12567778888777777776654
No 229
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=0.00058 Score=68.96 Aligned_cols=84 Identities=17% Similarity=0.189 Sum_probs=43.6
Q ss_pred CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCcccccccccc-chhhhhhhcccccceEEeecCCCc--c
Q 036584 580 NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHW-SNRLSEKIGDLIHLKYLGLRNSNI--G 656 (919)
Q Consensus 580 ~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~-~~~lp~~i~~L~~Lr~L~L~~~~i--~ 656 (919)
+.+++-|.+-++. ...|..+..++.+++.|++|+|+. +. +.. .+.+| -.+.+|+.|-|.||.+ +
T Consensus 70 ~~~v~elDL~~N~----iSdWseI~~ile~lP~l~~LNls~-N~-----L~s~I~~lp---~p~~nl~~lVLNgT~L~w~ 136 (418)
T KOG2982|consen 70 VTDVKELDLTGNL----ISDWSEIGAILEQLPALTTLNLSC-NS-----LSSDIKSLP---LPLKNLRVLVLNGTGLSWT 136 (418)
T ss_pred hhhhhhhhcccch----hccHHHHHHHHhcCccceEeeccC-Cc-----CCCccccCc---ccccceEEEEEcCCCCChh
Confidence 5566666665552 123344445556666666666665 44 220 01222 2344566666666655 4
Q ss_pred ccChhhhcCCCCcEEecCCC
Q 036584 657 ILPSSIVKLQRLQTLDFSGD 676 (919)
Q Consensus 657 ~LP~~l~~L~~L~~L~L~~~ 676 (919)
.+-..+..++.++.|.++.|
T Consensus 137 ~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 137 QSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred hhhhhhhcchhhhhhhhccc
Confidence 44445556666666666555
No 230
>PRK07261 topology modulation protein; Provisional
Probab=96.70 E-value=0.0044 Score=60.42 Aligned_cols=22 Identities=55% Similarity=0.767 Sum_probs=19.9
Q ss_pred EEEEEecCCchHHHHHHHHHcc
Q 036584 228 VISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
-|.|+|++|+||||||+.+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999999864
No 231
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.70 E-value=0.00041 Score=69.07 Aligned_cols=95 Identities=13% Similarity=0.034 Sum_probs=65.2
Q ss_pred CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhh-------hhhcccccceEEeecC
Q 036584 580 NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLS-------EKIGDLIHLKYLGLRN 652 (919)
Q Consensus 580 ~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp-------~~i~~L~~Lr~L~L~~ 652 (919)
+..+.-+.++|+..+.- -...+...+.+-++||+.+++. ... -....++| +.+-+|++|+..+||.
T Consensus 29 ~d~~~evdLSGNtigtE--A~e~l~~~ia~~~~L~vvnfsd-~ft----gr~kde~~~~L~~Ll~aLlkcp~l~~v~LSD 101 (388)
T COG5238 29 MDELVEVDLSGNTIGTE--AMEELCNVIANVRNLRVVNFSD-AFT----GRDKDELYSNLVMLLKALLKCPRLQKVDLSD 101 (388)
T ss_pred hcceeEEeccCCcccHH--HHHHHHHHHhhhcceeEeehhh-hhh----cccHHHHHHHHHHHHHHHhcCCcceeeeccc
Confidence 77888999999943321 1124555677788999999987 431 00112444 3456789999999999
Q ss_pred CCc-cccCh----hhhcCCCCcEEecCCCCCccccc
Q 036584 653 SNI-GILPS----SIVKLQRLQTLDFSGDVGCPVEL 683 (919)
Q Consensus 653 ~~i-~~LP~----~l~~L~~L~~L~L~~~~~~~~~l 683 (919)
|.+ ...|+ -|++-.+|.+|.+++| .++.+
T Consensus 102 NAfg~~~~e~L~d~is~~t~l~HL~l~Nn--GlGp~ 135 (388)
T COG5238 102 NAFGSEFPEELGDLISSSTDLVHLKLNNN--GLGPI 135 (388)
T ss_pred cccCcccchHHHHHHhcCCCceeEEeecC--CCCcc
Confidence 988 45554 3667789999999999 55433
No 232
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.69 E-value=0.0051 Score=75.19 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=38.6
Q ss_pred CCCccccccCHHHHHHHHhcC-------CCCcEEEEEEecCCchHHHHHHHHHcc
Q 036584 202 EENPVGFEDDTDLLLAKLLDK-------EQRRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
...++|.+..++.+.+.+... .....++.++|++|+|||.||+.++..
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~ 619 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL 619 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999998888542 223457999999999999999988873
No 233
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.68 E-value=0.051 Score=59.44 Aligned_cols=72 Identities=19% Similarity=0.328 Sum_probs=44.9
Q ss_pred CHHHHHHHHhcCC-CCcEEEEEEecCCchHHHHHHHHHcccCcc--CCC---CEEEEEEeCCCCCHHHHHHHHHHHhc
Q 036584 211 DTDLLLAKLLDKE-QRRLVISIYGMGGLGKTTLARKLYHNNDVK--NKF---DYCAWVSVSQDYKIKDLLLRIIKSFN 282 (919)
Q Consensus 211 ~~~~l~~~L~~~~-~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~--~~f---~~~~wv~~~~~~~~~~~~~~il~~l~ 282 (919)
-.+.+.+.+...+ ....+|+|.|.=|+||||+.+.+.+..... ..+ ..-+|-....+.-...++..|..++.
T Consensus 4 ~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l~ 81 (325)
T PF07693_consen 4 YAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQLE 81 (325)
T ss_pred HHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHHH
Confidence 3456777777653 567899999999999999999998753333 112 12233333333334455555555554
No 234
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.68 E-value=0.0082 Score=73.71 Aligned_cols=132 Identities=13% Similarity=0.160 Sum_probs=72.7
Q ss_pred CCccccccCHHHHHHHHhcC-------CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHH
Q 036584 203 ENPVGFEDDTDLLLAKLLDK-------EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLL 275 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 275 (919)
..++|.+..++.+...+... +....++.++|+.|+|||+||+.+++. +-..-...+-++.++-.....+ .
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~-~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTV-S 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccH-H
Confidence 57899999999998887632 122346789999999999999999873 2111122334444432111111 1
Q ss_pred HHHHHhcccccccccccCCHHHHHHHHHHHhccCc-eEEEEecccch--hHHHHHHhhCCCC-----------CCCcEEE
Q 036584 276 RIIKSFNIMTALEDLETKTEEDLARSLRKSLEAYS-YLMVIDDIWHK--EDWVSLKSAFPEN-----------KIGSRVI 341 (919)
Q Consensus 276 ~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~LlVlDdv~~~--~~~~~l~~~l~~~-----------~~gs~ii 341 (919)
.+ ++.+. .....+. ...+.+.++.++ .+++||+++.. +.++.+...+..+ ...+.+|
T Consensus 586 ~l---~g~~~---gyvg~~~---~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I 656 (821)
T CHL00095 586 KL---IGSPP---GYVGYNE---GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLII 656 (821)
T ss_pred Hh---cCCCC---cccCcCc---cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEE
Confidence 11 11111 1111111 113445555555 58889999854 4566666665532 1345566
Q ss_pred EEecc
Q 036584 342 ITTRI 346 (919)
Q Consensus 342 vTtr~ 346 (919)
+||..
T Consensus 657 ~Tsn~ 661 (821)
T CHL00095 657 MTSNL 661 (821)
T ss_pred EeCCc
Confidence 67654
No 235
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.67 E-value=0.033 Score=60.21 Aligned_cols=92 Identities=11% Similarity=0.110 Sum_probs=62.7
Q ss_pred cCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecc-hhhhhhcCCCCceEecCCCChHhHHHHHHHHhccCCCC
Q 036584 308 AYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRI-KDVAERSDDRNYVHELRFLRQDESWQLFCERAFRNSKA 384 (919)
Q Consensus 308 ~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 384 (919)
++.-++|+|+++.. +.+..++..+-.-..++.+|++|.+ ..+...+.+....+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-
Confidence 45568999999854 5678888888766667767666655 44443333444789999999999999887642 1
Q ss_pred chhhHHHHHHHHHHcCCcchHHHHH
Q 036584 385 EKGLENLGREMVQKCDGLPLAIVVL 409 (919)
Q Consensus 385 ~~~~~~~~~~I~~~~~G~PLal~~~ 409 (919)
.+ ...++..++|.|+.+..+
T Consensus 206 ~~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 AD-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred Ch-----HHHHHHHcCCCHHHHHHH
Confidence 11 123577889999765444
No 236
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.66 E-value=0.0011 Score=64.85 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=26.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeC
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVS 265 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 265 (919)
..-+.|+|.+|+|||.||..+.+.... .. ..+.|++++
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~-~g-~~v~f~~~~ 84 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIR-KG-YSVLFITAS 84 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHH-TT---EEEEEHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhcc-CC-cceeEeecC
Confidence 356999999999999999999984222 22 336777653
No 237
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.65 E-value=0.005 Score=63.75 Aligned_cols=93 Identities=19% Similarity=0.321 Sum_probs=54.6
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCC-CEEEEEEeCCCCC-HHHHHHHHHHHhccccc--cc-ccccCC-----H
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKF-DYCAWVSVSQDYK-IKDLLLRIIKSFNIMTA--LE-DLETKT-----E 295 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~-~~~~~~~il~~l~~~~~--~~-~~~~~~-----~ 295 (919)
-+-++|.|.+|+|||||++.+++ ..+.+| +.++++-+++... ..++...+...-..... .. ..+... .
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 45789999999999999999998 444445 4566677776544 34555555432111000 00 111111 1
Q ss_pred HHHHHHHHHHh--c-cCceEEEEecccc
Q 036584 296 EDLARSLRKSL--E-AYSYLMVIDDIWH 320 (919)
Q Consensus 296 ~~~~~~l~~~l--~-~~~~LlVlDdv~~ 320 (919)
....-.+.+++ + ++..|+++||+-.
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 12233344555 3 8899999999843
No 238
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.016 Score=59.74 Aligned_cols=81 Identities=16% Similarity=0.289 Sum_probs=49.8
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccC--ccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNND--VKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLR 303 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~--~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 303 (919)
-++|.++||||.|||+|.+..++... ..+.|....-+.+.. ..++.. .... .+.....+..++.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSK----WFsE------SgKlV~kmF~kI~ 242 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSK----WFSE------SGKLVAKMFQKIQ 242 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHH----HHhh------hhhHHHHHHHHHH
Confidence 47999999999999999999998643 344554444454432 222222 2221 1233456666777
Q ss_pred HHhccCce--EEEEecccc
Q 036584 304 KSLEAYSY--LMVIDDIWH 320 (919)
Q Consensus 304 ~~l~~~~~--LlVlDdv~~ 320 (919)
+.+.++.. .+.+|.|..
T Consensus 243 ELv~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 243 ELVEDRGNLVFVLIDEVES 261 (423)
T ss_pred HHHhCCCcEEEEEeHHHHH
Confidence 77755443 344599864
No 239
>PRK04132 replication factor C small subunit; Provisional
Probab=96.62 E-value=0.044 Score=65.93 Aligned_cols=155 Identities=14% Similarity=0.081 Sum_probs=96.1
Q ss_pred cCCchHHHHHHHHHcccCccCCC-CEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHHhccCceE
Q 036584 234 MGGLGKTTLARKLYHNNDVKNKF-DYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSLEAYSYL 312 (919)
Q Consensus 234 ~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L 312 (919)
|.++||||+|..++++. ....+ ..++-++++...... .+++++..+....+ . -..+.-+
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~---~---------------~~~~~KV 633 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGIN-VIREKVKEFARTKP---I---------------GGASFKI 633 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCC---c---------------CCCCCEE
Confidence 78899999999999852 22233 236667777543433 34444443321110 0 0123579
Q ss_pred EEEecccch--hHHHHHHhhCCCCCCCcEEEEEecch-hhhhhcCCCCceEecCCCChHhHHHHHHHHhccCCCCchhhH
Q 036584 313 MVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRIK-DVAERSDDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLE 389 (919)
Q Consensus 313 lVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~ 389 (919)
+|+|+++.. +..+.+...+-.-...+++|+++.+. .+..........+.+.+++.++-...+.+.+...... -..
T Consensus 634 vIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~--i~~ 711 (846)
T PRK04132 634 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE--LTE 711 (846)
T ss_pred EEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC--CCH
Confidence 999999865 46677777776544566677665543 3333333444789999999999998887665432221 124
Q ss_pred HHHHHHHHHcCCcchHHHHHH
Q 036584 390 NLGREMVQKCDGLPLAIVVLG 410 (919)
Q Consensus 390 ~~~~~I~~~~~G~PLal~~~~ 410 (919)
+....|++.++|.+..+..+-
T Consensus 712 e~L~~Ia~~s~GDlR~AIn~L 732 (846)
T PRK04132 712 EGLQAILYIAEGDMRRAINIL 732 (846)
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 567889999999986554433
No 240
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.61 E-value=0.0064 Score=64.76 Aligned_cols=100 Identities=18% Similarity=0.127 Sum_probs=61.2
Q ss_pred HHHHHHHh-cCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccc-ccc
Q 036584 213 DLLLAKLL-DKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTAL-EDL 290 (919)
Q Consensus 213 ~~l~~~L~-~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~-~~~ 290 (919)
..+...|- .+=+.-+++-|+|++|+||||||.+++.. ....-..++|++..+.++.. .+++++..... .-.
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~ 113 (321)
T TIGR02012 41 LSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVS 113 (321)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEe
Confidence 34445554 34345679999999999999999998764 22233557899887766653 34444332110 011
Q ss_pred ccCCHHHHHHHHHHHh-ccCceEEEEeccc
Q 036584 291 ETKTEEDLARSLRKSL-EAYSYLMVIDDIW 319 (919)
Q Consensus 291 ~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~ 319 (919)
...+.++....+...+ .+..-+||+|.|-
T Consensus 114 ~p~~~eq~l~~~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 114 QPDTGEQALEIAETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred cCCCHHHHHHHHHHHhhccCCcEEEEcchh
Confidence 2234455555555555 3456799999974
No 241
>PRK06921 hypothetical protein; Provisional
Probab=96.59 E-value=0.0091 Score=62.58 Aligned_cols=37 Identities=22% Similarity=0.220 Sum_probs=28.4
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCC-CCEEEEEEe
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNK-FDYCAWVSV 264 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-f~~~~wv~~ 264 (919)
...+.++|.+|+|||.||..+++. +..+ -..++|++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEH
Confidence 467899999999999999999984 3332 344667765
No 242
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.57 E-value=0.0015 Score=69.97 Aligned_cols=58 Identities=19% Similarity=0.344 Sum_probs=45.6
Q ss_pred CccccccCHHHHHHHHhcC----CCCcEEEEEEecCCchHHHHHHHHHcccCc-----cCCCCEEEE
Q 036584 204 NPVGFEDDTDLLLAKLLDK----EQRRLVISIYGMGGLGKTTLARKLYHNNDV-----KNKFDYCAW 261 (919)
Q Consensus 204 ~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~-----~~~f~~~~w 261 (919)
+++|.++.++++++++... +...+++.|+|++|+||||||+.+++.... .+.|-..-|
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 6999999999999999763 234689999999999999999999875322 235555556
No 243
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.57 E-value=0.013 Score=59.70 Aligned_cols=129 Identities=13% Similarity=0.157 Sum_probs=76.3
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCC-----CCCHHHHHHHHHHHhccccccc--ccccCCHHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQ-----DYKIKDLLLRIIKSFNIMTALE--DLETKTEEDL 298 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~il~~l~~~~~~~--~~~~~~~~~~ 298 (919)
..+++|+|..|+||||+++.+.. ....-.+.++..-.+ .....+.+.+++..++...... -..+.+-.+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 46999999999999999999996 333333344443221 1223345666666665432110 0112223344
Q ss_pred HHH-HHHHhccCceEEEEecccchh---HHHHHHhhCCC--CCCCcEEEEEecchhhhhhcCCCC
Q 036584 299 ARS-LRKSLEAYSYLMVIDDIWHKE---DWVSLKSAFPE--NKIGSRVIITTRIKDVAERSDDRN 357 (919)
Q Consensus 299 ~~~-l~~~l~~~~~LlVlDdv~~~~---~~~~l~~~l~~--~~~gs~iivTtr~~~v~~~~~~~~ 357 (919)
++. +.+.|.-++-++|.|..-+.- .-.++...+.+ ...|-..+..|.+-.++..+....
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri 180 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRI 180 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccE
Confidence 443 556778889999999865431 11233333322 233666888888888888876543
No 244
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.57 E-value=0.0055 Score=65.46 Aligned_cols=116 Identities=15% Similarity=0.160 Sum_probs=64.0
Q ss_pred cccCHHHHHHHHhcCC--CCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccc
Q 036584 208 FEDDTDLLLAKLLDKE--QRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMT 285 (919)
Q Consensus 208 r~~~~~~l~~~L~~~~--~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~ 285 (919)
|........+++..-. ...+-+.|+|..|+|||.||..+++... ..-..+.+++++ +++..+......
T Consensus 136 ~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~~v~~~~~~------~l~~~lk~~~~~-- 205 (306)
T PRK08939 136 RLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA--KKGVSSTLLHFP------EFIRELKNSISD-- 205 (306)
T ss_pred HHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCCEEEEEHH------HHHHHHHHHHhc--
Confidence 3333444455554321 1346799999999999999999999532 222335666654 445555444321
Q ss_pred cccccccCCHHHHHHHHHHHhccCceEEEEecccch--hHHH--HHHhhC-CCC-CCCcEEEEEec
Q 036584 286 ALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHK--EDWV--SLKSAF-PEN-KIGSRVIITTR 345 (919)
Q Consensus 286 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~--~l~~~l-~~~-~~gs~iivTtr 345 (919)
.+.... .+.+. +.=||||||+... ..|. .+...+ ... ..+..+|+||.
T Consensus 206 -------~~~~~~----l~~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 206 -------GSVKEK----IDAVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred -------CcHHHH----HHHhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 111122 22232 3558999999633 4564 344333 211 23455778875
No 245
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.57 E-value=0.0061 Score=65.64 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=28.3
Q ss_pred EEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeC
Q 036584 227 LVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVS 265 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 265 (919)
..+.++|.+|+|||.||..+++. ....-..++++++.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~~ 220 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTAD 220 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEHH
Confidence 67999999999999999999984 32223356777654
No 246
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.56 E-value=0.0032 Score=59.07 Aligned_cols=44 Identities=30% Similarity=0.264 Sum_probs=32.5
Q ss_pred cccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcc
Q 036584 206 VGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 206 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
||....++++.+.+..-......|.|+|..|+||+++|+.++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 56666777777777664334567899999999999999999874
No 247
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.54 E-value=0.014 Score=69.93 Aligned_cols=115 Identities=11% Similarity=0.072 Sum_probs=65.4
Q ss_pred CCccccccCHHHHHHHHhcC-------CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHH
Q 036584 203 ENPVGFEDDTDLLLAKLLDK-------EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLL 275 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 275 (919)
..++|-++.++.|...+... ......+.++|++|+|||++|+.++.. .... .+.+++++-.... .
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~~~---~i~id~se~~~~~-~-- 529 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LGIE---LLRFDMSEYMERH-T-- 529 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hCCC---cEEeechhhcccc-c--
Confidence 35899999999998888732 122457899999999999999999873 3322 3344444321111 1
Q ss_pred HHHHHhcccccccccccCCHHHHHHHHHHHhcc-CceEEEEecccch--hHHHHHHhhCC
Q 036584 276 RIIKSFNIMTALEDLETKTEEDLARSLRKSLEA-YSYLMVIDDIWHK--EDWVSLKSAFP 332 (919)
Q Consensus 276 ~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~--~~~~~l~~~l~ 332 (919)
...+.+... .....+. ...+.+.++. ...+|+||+++.. +.++.+...+.
T Consensus 530 --~~~LiG~~~--gyvg~~~---~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 530 --VSRLIGAPP--GYVGFDQ---GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred --HHHHcCCCC--Ccccccc---cchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 122222110 1111111 1123333433 3469999999865 45666666554
No 248
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.53 E-value=0.00089 Score=59.91 Aligned_cols=82 Identities=16% Similarity=0.190 Sum_probs=61.1
Q ss_pred hhhccCceEEEEEeccCccccccccccchhhhhhhccc-ccceEEeecCCCccccChhhhcCCCCcEEecCCCCCccccc
Q 036584 605 LLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDL-IHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVEL 683 (919)
Q Consensus 605 ~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L-~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~l 683 (919)
..+.+-..|...+|++ +. ++ ++|+.+... +.+..|+|++|.|..+|..+..++.|+.|+++.| .+...
T Consensus 47 y~l~~~~el~~i~ls~-N~-----fk---~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N--~l~~~ 115 (177)
T KOG4579|consen 47 YMLSKGYELTKISLSD-NG-----FK---KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN--PLNAE 115 (177)
T ss_pred HHHhCCceEEEEeccc-ch-----hh---hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC--ccccc
Confidence 3445666777788888 77 77 777776543 4788888888888888888888888888888887 77777
Q ss_pred Cccccccccccccc
Q 036584 684 PIEINMMQELRHLI 697 (919)
Q Consensus 684 p~~i~~L~~L~~L~ 697 (919)
|..|..|.+|-.|.
T Consensus 116 p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 116 PRVIAPLIKLDMLD 129 (177)
T ss_pred hHHHHHHHhHHHhc
Confidence 87777777777773
No 249
>PRK09354 recA recombinase A; Provisional
Probab=96.53 E-value=0.0087 Score=64.33 Aligned_cols=100 Identities=19% Similarity=0.132 Sum_probs=62.6
Q ss_pred HHHHHHHh-cCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccc-ccc
Q 036584 213 DLLLAKLL-DKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTAL-EDL 290 (919)
Q Consensus 213 ~~l~~~L~-~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~-~~~ 290 (919)
..|..+|- .+=+.-+++-|+|++|+||||||.+++.. ....-..++||+....++.. .+++++..... --.
T Consensus 46 ~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~ 118 (349)
T PRK09354 46 LALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVS 118 (349)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEe
Confidence 34555555 44345679999999999999999998863 22334568999988877752 34444432110 011
Q ss_pred ccCCHHHHHHHHHHHh-ccCceEEEEeccc
Q 036584 291 ETKTEEDLARSLRKSL-EAYSYLMVIDDIW 319 (919)
Q Consensus 291 ~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~ 319 (919)
...+.++....+...+ ++..-+||+|.|-
T Consensus 119 qp~~~Eq~l~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 119 QPDTGEQALEIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred cCCCHHHHHHHHHHHhhcCCCCEEEEeChh
Confidence 2233455555555555 3456799999974
No 250
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.52 E-value=0.033 Score=60.16 Aligned_cols=88 Identities=16% Similarity=0.104 Sum_probs=51.8
Q ss_pred cCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecchh-hhhhcCCCCceEecCCCChHhHHHHHHHHhccCCCC
Q 036584 308 AYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRIKD-VAERSDDRNYVHELRFLRQDESWQLFCERAFRNSKA 384 (919)
Q Consensus 308 ~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 384 (919)
+++-++|+|++... +.-..+...+.....+..+|++|.+.. +...+......+.+.+++.++..+.+.....
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~~----- 186 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERGV----- 186 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcCC-----
Confidence 44456677888643 344455554443334566777776643 4433333346889999999999988865421
Q ss_pred chhhHHHHHHHHHHcCCcchH
Q 036584 385 EKGLENLGREMVQKCDGLPLA 405 (919)
Q Consensus 385 ~~~~~~~~~~I~~~~~G~PLa 405 (919)
... . . .+..++|.|+.
T Consensus 187 ~~~--~--~-~l~~~~g~p~~ 202 (325)
T PRK08699 187 AEP--E--E-RLAFHSGAPLF 202 (325)
T ss_pred CcH--H--H-HHHHhCCChhh
Confidence 111 1 1 13568899964
No 251
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.51 E-value=0.0056 Score=63.63 Aligned_cols=74 Identities=26% Similarity=0.336 Sum_probs=46.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKS 305 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 305 (919)
..-+.++|.+|+|||.||..+.++ +...--.+.++++. +++.++...... ......|.+.
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~~~------el~~~Lk~~~~~------------~~~~~~l~~~ 164 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFITAP------DLLSKLKAAFDE------------GRLEEKLLRE 164 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEEHH------HHHHHHHHHHhc------------CchHHHHHHH
Confidence 557899999999999999999995 33332346666554 455555554432 1112223332
Q ss_pred hccCceEEEEecccc
Q 036584 306 LEAYSYLMVIDDIWH 320 (919)
Q Consensus 306 l~~~~~LlVlDdv~~ 320 (919)
+.. -=||||||+-.
T Consensus 165 l~~-~dlLIiDDlG~ 178 (254)
T COG1484 165 LKK-VDLLIIDDIGY 178 (254)
T ss_pred hhc-CCEEEEecccC
Confidence 222 34899999854
No 252
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.51 E-value=0.0077 Score=64.23 Aligned_cols=100 Identities=19% Similarity=0.113 Sum_probs=61.1
Q ss_pred HHHHHHHh-cCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccccccc-cc
Q 036584 213 DLLLAKLL-DKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALE-DL 290 (919)
Q Consensus 213 ~~l~~~L~-~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~-~~ 290 (919)
..|...|- .+=+.-+++-|+|++|+||||||.+++.. ....-..++||+..+.++.. .+++++.....- -.
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~ 113 (325)
T cd00983 41 LSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLIS 113 (325)
T ss_pred HHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheec
Confidence 34445554 34345679999999999999999998863 22233568899988776643 334443311100 11
Q ss_pred ccCCHHHHHHHHHHHh-ccCceEEEEeccc
Q 036584 291 ETKTEEDLARSLRKSL-EAYSYLMVIDDIW 319 (919)
Q Consensus 291 ~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~ 319 (919)
...+.++....+...+ .+..-+||+|.|-
T Consensus 114 ~p~~~eq~l~i~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 114 QPDTGEQALEIADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred CCCCHHHHHHHHHHHHhccCCCEEEEcchH
Confidence 2234455555555555 3456799999974
No 253
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.50 E-value=0.0058 Score=69.54 Aligned_cols=75 Identities=21% Similarity=0.277 Sum_probs=54.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHH
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRK 304 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 304 (919)
..++..++|++|+||||||..++++.- | .++=|++|...+...+-..|...+..+... .
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~l----~------------ 383 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHSVL----D------------ 383 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhcccc----c------------
Confidence 467999999999999999999997422 2 377888888877777766666655443210 0
Q ss_pred HhccCceEEEEecccch
Q 036584 305 SLEAYSYLMVIDDIWHK 321 (919)
Q Consensus 305 ~l~~~~~LlVlDdv~~~ 321 (919)
..+++.-||+|.++-.
T Consensus 384 -adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 384 -ADSRPVCLVIDEIDGA 399 (877)
T ss_pred -cCCCcceEEEecccCC
Confidence 0256888999999743
No 254
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.49 E-value=0.0059 Score=60.51 Aligned_cols=53 Identities=21% Similarity=0.227 Sum_probs=36.8
Q ss_pred ccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEE
Q 036584 207 GFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVS 263 (919)
Q Consensus 207 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 263 (919)
.+..+....++.|.. ..+|.+.|++|.|||.||...+-+.-..+.|+.++++.
T Consensus 4 p~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 4 PKNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp --SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 344555666777773 45999999999999999999887655568888888774
No 255
>PRK04296 thymidine kinase; Provisional
Probab=96.49 E-value=0.0033 Score=62.44 Aligned_cols=113 Identities=14% Similarity=0.093 Sum_probs=62.0
Q ss_pred EEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHHh
Q 036584 227 LVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSL 306 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l 306 (919)
.++.|+|+.|.||||+|..++. +...+-..++.+. ..++.......++..++.... ........++...+.+ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~--~~~~~~~~~~~~~~~~-~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSRE--AIPVSSDTDIFELIEE-E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEe--ccccccccCCcEecCCCCccc--ceEeCChHHHHHHHHh-h
Confidence 4788999999999999998887 3333333344442 111222223344444442111 1111234455555555 3
Q ss_pred ccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecchh
Q 036584 307 EAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRIKD 348 (919)
Q Consensus 307 ~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~ 348 (919)
.++.-+||+|.+.-. ++..++...+ ...|..||+|.++.+
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 334459999999543 2233333332 234788999998744
No 256
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.46 E-value=0.0066 Score=60.81 Aligned_cols=112 Identities=13% Similarity=0.110 Sum_probs=61.4
Q ss_pred EEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHHh
Q 036584 227 LVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSL 306 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l 306 (919)
.+|.|+|+.|.||||++..+... ........++.- ..+.. -.... ...+-... +. ..+.....+.++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t~-e~~~E--~~~~~-~~~~i~q~---~v-g~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILTI-EDPIE--FVHES-KRSLINQR---EV-GLDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEEE-cCCcc--ccccC-ccceeeec---cc-CCCccCHHHHHHHHh
Confidence 37899999999999999988763 332333333332 21111 00000 00000000 00 111233455677777
Q ss_pred ccCceEEEEecccchhHHHHHHhhCCCCCCCcEEEEEecchhhhh
Q 036584 307 EAYSYLMVIDDIWHKEDWVSLKSAFPENKIGSRVIITTRIKDVAE 351 (919)
Q Consensus 307 ~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 351 (919)
+..+=++++|++.+.+.+..+.... ..|..++.|+...++..
T Consensus 72 r~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 72 RQDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAAK 113 (198)
T ss_pred cCCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHHH
Confidence 7778899999998877655544332 23555777776655443
No 257
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.45 E-value=0.071 Score=57.90 Aligned_cols=45 Identities=20% Similarity=0.150 Sum_probs=35.2
Q ss_pred ccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcc
Q 036584 205 PVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 205 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
+||....+.++.+.+..-......|.|.|..|+||+++|+.+.+.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 467777777777777664444567899999999999999999864
No 258
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.44 E-value=0.012 Score=61.35 Aligned_cols=105 Identities=24% Similarity=0.216 Sum_probs=60.2
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCcc----CCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccc-
Q 036584 213 DLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVK----NKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTAL- 287 (919)
Q Consensus 213 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~- 287 (919)
+.|.+.|..+=....+.=|+|.+|+|||.|+.+++-..... +.=..++|++-...|+.+.+ .+|++........
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl-~~i~~~~~~~~~~~ 103 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERL-QQIAERFGLDPEEI 103 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHH-HHHHHHTTS-HHHH
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHH-HHHhhccccccchh
Confidence 35555554442335699999999999999998887543322 22356999999888887655 4566654321100
Q ss_pred ----cccccCCHHHHHH---HHHHHh-ccCceEEEEecc
Q 036584 288 ----EDLETKTEEDLAR---SLRKSL-EAYSYLMVIDDI 318 (919)
Q Consensus 288 ----~~~~~~~~~~~~~---~l~~~l-~~~~~LlVlDdv 318 (919)
.-....+.+++.. .+...+ ..+--|||+|.+
T Consensus 104 l~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 104 LDNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred hhceeeeecCCHHHHHHHHHHHHhhccccceEEEEecch
Confidence 0011223333333 333334 334458888887
No 259
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.42 E-value=0.041 Score=52.55 Aligned_cols=59 Identities=17% Similarity=0.385 Sum_probs=38.7
Q ss_pred HHHHHHHHHhccCceEEEEec----ccchhHHHHHHhhCCC-CCCCcEEEEEecchhhhhhcCCC
Q 036584 297 DLARSLRKSLEAYSYLMVIDD----IWHKEDWVSLKSAFPE-NKIGSRVIITTRIKDVAERSDDR 356 (919)
Q Consensus 297 ~~~~~l~~~l~~~~~LlVlDd----v~~~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~~~~~~~ 356 (919)
+-.-.|.+.+-+++-+|+=|. ++..-.|+-+ ..|.. +..|..||++|.+..+...+...
T Consensus 143 QQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im-~lfeeinr~GtTVl~ATHd~~lv~~~~~r 206 (223)
T COG2884 143 QQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIM-RLFEEINRLGTTVLMATHDLELVNRMRHR 206 (223)
T ss_pred HHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHH-HHHHHHhhcCcEEEEEeccHHHHHhccCc
Confidence 334456667777888998886 3333445433 22322 44589999999999988776543
No 260
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.41 E-value=0.0024 Score=58.38 Aligned_cols=22 Identities=50% Similarity=0.628 Sum_probs=20.5
Q ss_pred EEEEEecCCchHHHHHHHHHcc
Q 036584 228 VISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
+|.|.|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999983
No 261
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.40 E-value=0.0053 Score=58.96 Aligned_cols=95 Identities=27% Similarity=0.293 Sum_probs=67.0
Q ss_pred CCCCccCcCCCCCCCCceeEEEceec-CCCCcchhccCCCcceEEEEccCCCC-CCchhhhcCCCCCeEEEeeccccCee
Q 036584 772 DANSFASLQPLSHCQCLVDLRLSGRM-KKLPEDMHVFLPNLECLSLSVPYPKE-DPMPALEMLPNLIILDLHFRCHYVKK 849 (919)
Q Consensus 772 ~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~-~~~~~l~~lp~L~~L~L~~~~~~~~~ 849 (919)
++|.+..+..+..++.|..|.+..|. ..+...+..++++|..|.|.+|.+.. ..+..+..+|.|++|.+-+|......
T Consensus 50 tdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~ 129 (233)
T KOG1644|consen 50 TDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKK 129 (233)
T ss_pred cccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhccc
Confidence 44555455667778888899888874 45555677777899999999998754 24567888999999999866543221
Q ss_pred --EEEcCCCCcccceeEEe
Q 036584 850 --LGCRAEGFPLLEILQLD 866 (919)
Q Consensus 850 --~~~~~~~f~~L~~L~l~ 866 (919)
-......+|+|+.|++.
T Consensus 130 ~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 130 NYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred CceeEEEEecCcceEeehh
Confidence 12234568899999887
No 262
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.043 Score=55.81 Aligned_cols=92 Identities=24% Similarity=0.346 Sum_probs=60.1
Q ss_pred CccccccCHHHHHHHHhc----------CCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHH
Q 036584 204 NPVGFEDDTDLLLAKLLD----------KEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDL 273 (919)
Q Consensus 204 ~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 273 (919)
++.|.+..++.+.+...- .....+-|.++|++|.||+.||+.|+.. .... |.++|..
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATE--AnST-----FFSvSSS------ 200 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATE--ANST-----FFSVSSS------ 200 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhh--cCCc-----eEEeehH------
Confidence 456777666666655432 2234678999999999999999999984 2222 3445532
Q ss_pred HHHHHHHhcccccccccccCCHHHHHHHHHHHh-ccCceEEEEecccc
Q 036584 274 LLRIIKSFNIMTALEDLETKTEEDLARSLRKSL-EAYSYLMVIDDIWH 320 (919)
Q Consensus 274 ~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~ 320 (919)
+++....+ ..+.++..|.+.. ++|+.+|++|.++.
T Consensus 201 --DLvSKWmG----------ESEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 201 --DLVSKWMG----------ESEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred --HHHHHHhc----------cHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 22222222 1256677777766 57899999999974
No 263
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.40 E-value=0.01 Score=68.74 Aligned_cols=44 Identities=32% Similarity=0.444 Sum_probs=36.3
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
.+++|.+..++.+...+.... ...|.|+|++|+|||++|+.+++
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~--~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPN--PQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 358999999988888775543 45678999999999999999986
No 264
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.02 Score=63.94 Aligned_cols=151 Identities=19% Similarity=0.263 Sum_probs=87.1
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKS 305 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 305 (919)
..-|.++|++|+|||-||+.|+| ..+-+| +++-.+ +++.... + . .+..++.+.+.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKGP----ELlNkYV----G---------E-SErAVR~vFqR 599 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKGP----ELLNKYV----G---------E-SERAVRQVFQR 599 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecCH----HHHHHHh----h---------h-HHHHHHHHHHH
Confidence 45788999999999999999999 455554 444422 2222211 1 1 12334444444
Q ss_pred h-ccCceEEEEecccch-------------hHHHHHHhhCCCC--CCCcEEEEEecchhhhhhc--CC--CCceEecCCC
Q 036584 306 L-EAYSYLMVIDDIWHK-------------EDWVSLKSAFPEN--KIGSRVIITTRIKDVAERS--DD--RNYVHELRFL 365 (919)
Q Consensus 306 l-~~~~~LlVlDdv~~~-------------~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~~--~~--~~~~~~l~~L 365 (919)
- ...+++|+||.++.. ....+++..+... ..|--||-.|.-+++.... .+ .....-++.-
T Consensus 600 AR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lP 679 (802)
T KOG0733|consen 600 ARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLP 679 (802)
T ss_pred hhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCC
Confidence 4 467899999999742 1234455555543 3456666666555543321 11 1155667777
Q ss_pred ChHhHHHHHHHHhccCCCC---chhhHHHHHHHHHHcCCcc
Q 036584 366 RQDESWQLFCERAFRNSKA---EKGLENLGREMVQKCDGLP 403 (919)
Q Consensus 366 ~~~~~~~lf~~~~~~~~~~---~~~~~~~~~~I~~~~~G~P 403 (919)
+.+|-.++++...-....+ +-++.+++.. .+|.|.-
T Consensus 680 n~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 680 NAEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred CHHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 8888888988877532222 3344444432 3455554
No 265
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.09 Score=57.31 Aligned_cols=153 Identities=14% Similarity=0.126 Sum_probs=82.1
Q ss_pred EEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHHh
Q 036584 227 LVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSL 306 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l 306 (919)
|--.++||||.|||++..++++... |+ +.=+..+...+-.+ ++.++..
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----yd-IydLeLt~v~~n~d-Lr~LL~~-------------------------- 283 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YD-IYDLELTEVKLDSD-LRHLLLA-------------------------- 283 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----Cc-eEEeeeccccCcHH-HHHHHHh--------------------------
Confidence 5678999999999999999998422 32 22222222111111 2222221
Q ss_pred ccCceEEEEecccch--------h------------HHHHHHhhCCC--CCC-CcEEE-EEecchhhhhh--cC-C-CCc
Q 036584 307 EAYSYLMVIDDIWHK--------E------------DWVSLKSAFPE--NKI-GSRVI-ITTRIKDVAER--SD-D-RNY 358 (919)
Q Consensus 307 ~~~~~LlVlDdv~~~--------~------------~~~~l~~~l~~--~~~-gs~ii-vTtr~~~v~~~--~~-~-~~~ 358 (919)
...+.+||+.|++-. + ...-++..+.. ..+ +-||| +||...+-... +. + ...
T Consensus 284 t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDm 363 (457)
T KOG0743|consen 284 TPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDM 363 (457)
T ss_pred CCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCccee
Confidence 233567777777521 0 12223433332 112 33554 57766543322 11 1 226
Q ss_pred eEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHHHHHh-cCC
Q 036584 359 VHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVLGGLL-STK 416 (919)
Q Consensus 359 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~~~~l-~~~ 416 (919)
.+.+..-+.+....|+.+...... ++ .+..+|.+...|.-+.=..+++.| ..+
T Consensus 364 hI~mgyCtf~~fK~La~nYL~~~~-~h----~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 364 HIYMGYCTFEAFKTLASNYLGIEE-DH----RLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred EEEcCCCCHHHHHHHHHHhcCCCC-Cc----chhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 788999999999999998876543 12 344455555555544444555544 443
No 266
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.33 E-value=0.0071 Score=57.08 Aligned_cols=21 Identities=43% Similarity=0.657 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 036584 228 VISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~ 248 (919)
+|.+.|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999986
No 267
>PTZ00494 tuzin-like protein; Provisional
Probab=96.33 E-value=0.29 Score=53.19 Aligned_cols=167 Identities=12% Similarity=0.137 Sum_probs=102.2
Q ss_pred CCCCccccccCHHHHHHHHhcC-CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 036584 201 VEENPVGFEDDTDLLLAKLLDK-EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIK 279 (919)
Q Consensus 201 ~~~~~vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 279 (919)
....+|.|+++-..+.+.|.+- ..+.+++++.|.-|+||++|.+...+.+.. ..++|++... ++.++.+++
T Consensus 369 ~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~---EDtLrsVVK 440 (664)
T PTZ00494 369 AEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGT---EDTLRSVVR 440 (664)
T ss_pred ccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCC---cchHHHHHH
Confidence 4567899999988888888774 357899999999999999999999874332 3678888754 556788888
Q ss_pred HhcccccccccccCCHHHHHHHHH---HHhccCceEEEEe--cccchh-HHHHHHhhCCCCCCCcEEEEEecchhhhh--
Q 036584 280 SFNIMTALEDLETKTEEDLARSLR---KSLEAYSYLMVID--DIWHKE-DWVSLKSAFPENKIGSRVIITTRIKDVAE-- 351 (919)
Q Consensus 280 ~l~~~~~~~~~~~~~~~~~~~~l~---~~l~~~~~LlVlD--dv~~~~-~~~~l~~~l~~~~~gs~iivTtr~~~v~~-- 351 (919)
.++.+.. +.-..-.+-+.+... ....++.-+||+- +-.+.. .+.+.. .|.....-|+|++---.+.+..
T Consensus 441 ALgV~nv--e~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplESLT~~n 517 (664)
T PTZ00494 441 ALGVSNV--EVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKALTPLN 517 (664)
T ss_pred HhCCCCh--hhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechHhhhchhh
Confidence 8876442 111222222222222 2233444555553 222221 222221 2223334577776544333222
Q ss_pred hcCCCCceEecCCCChHhHHHHHHHHh
Q 036584 352 RSDDRNYVHELRFLRQDESWQLFCERA 378 (919)
Q Consensus 352 ~~~~~~~~~~l~~L~~~~~~~lf~~~~ 378 (919)
..-+....|.+++++.++|.++-++..
T Consensus 518 ~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 518 VSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred ccCccceeEecCCcCHHHHHHHHhccc
Confidence 122233789999999999999876653
No 268
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.32 E-value=0.039 Score=55.72 Aligned_cols=226 Identities=13% Similarity=0.143 Sum_probs=126.0
Q ss_pred ccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccC----ccCCCCEEEEEEeCCC----------C--
Q 036584 205 PVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNND----VKNKFDYCAWVSVSQD----------Y-- 268 (919)
Q Consensus 205 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~----~~~~f~~~~wv~~~~~----------~-- 268 (919)
+.++++....+.+....+ +..-..++|+.|.||-|.+..+.++.. .+-+-+...|.+-+.. +
T Consensus 15 l~~~~e~~~~Lksl~~~~--d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHl 92 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSSTG--DFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHL 92 (351)
T ss_pred cccHHHHHHHHHHhcccC--CCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceE
Confidence 566667777777666533 377889999999999998877766411 1122344555544332 1
Q ss_pred ---------CHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHHhccCce-EEEEecccch--hHHHHHHhhCCCCCC
Q 036584 269 ---------KIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSLEAYSY-LMVIDDIWHK--EDWVSLKSAFPENKI 336 (919)
Q Consensus 269 ---------~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~--~~~~~l~~~l~~~~~ 336 (919)
..+-+..+|+.+.....+.+ .-..+.| ++|+-.+++. +.-..+...+-.-..
T Consensus 93 EitPSDaG~~DRvViQellKevAQt~qie----------------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 93 EITPSDAGNYDRVVIQELLKEVAQTQQIE----------------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred EeChhhcCcccHHHHHHHHHHHHhhcchh----------------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 11223333333332211100 0012233 6777777643 333344444333334
Q ss_pred CcEEEEEecch-hhhhhcCCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHHHHHhcC
Q 036584 337 GSRVIITTRIK-DVAERSDDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVLGGLLST 415 (919)
Q Consensus 337 gs~iivTtr~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~~~~l~~ 415 (919)
.+|+|+...+- .+...+....-.+.++..+++|-...+.+.+-...-.-| .+++++|+++++|.---...+-..++-
T Consensus 157 ~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~ 234 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRV 234 (351)
T ss_pred CceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 67777643321 122222233357889999999999999888755444323 678999999999876433333332221
Q ss_pred C-----------ChHHHHHHHHHHHHhhcC--CchhhHHHHHhccccc
Q 036584 416 K-----------RPQEWREVRNHIWRHLRN--DSIQVSYLLDLSFNDL 450 (919)
Q Consensus 416 ~-----------~~~~w~~~~~~~~~~l~~--~~~~i~~~l~~sy~~L 450 (919)
+ ...+|+-+..+....+-. .+..+..+-..-|+-|
T Consensus 235 ~n~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 235 NNEPFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred ccccccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 1 256799988877665432 2345555544445544
No 269
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.009 Score=70.14 Aligned_cols=154 Identities=15% Similarity=0.118 Sum_probs=84.3
Q ss_pred CCCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHccc---CccC--CCCEEEEEEeCCCCCHHHHHHH
Q 036584 202 EENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNN---DVKN--KFDYCAWVSVSQDYKIKDLLLR 276 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~---~~~~--~f~~~~wv~~~~~~~~~~~~~~ 276 (919)
-+.++||++|+.++++.|.....+-+| ++|.+|+|||++|.-++..- .+-. ....++-.+++
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNPv--LiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g----------- 235 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNPV--LVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLG----------- 235 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCCe--EecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHH-----------
Confidence 357899999999999999876544443 78999999999876666520 1100 11112222211
Q ss_pred HHHHhcccccccccccCCHHHHHHHHHHHh-ccCceEEEEecccch-----------hHHHHHHhhCCCCCCCcEEEEEe
Q 036584 277 IIKSFNIMTALEDLETKTEEDLARSLRKSL-EAYSYLMVIDDIWHK-----------EDWVSLKSAFPENKIGSRVIITT 344 (919)
Q Consensus 277 il~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~iivTt 344 (919)
.-+.+. ... -+.++....+.+.+ +.++..|++|.++.. +.-.-+++.|.++. --.|=.||
T Consensus 236 --~LvAGa----kyR-GeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe-L~~IGATT 307 (786)
T COG0542 236 --SLVAGA----KYR-GEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE-LRCIGATT 307 (786)
T ss_pred --HHhccc----ccc-CcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC-eEEEEecc
Confidence 111111 111 12334444444444 345899999998743 11222344444433 22244455
Q ss_pred cchhhhhhcC------CCCceEecCCCChHhHHHHHHHH
Q 036584 345 RIKDVAERSD------DRNYVHELRFLRQDESWQLFCER 377 (919)
Q Consensus 345 r~~~v~~~~~------~~~~~~~l~~L~~~~~~~lf~~~ 377 (919)
-++- -.++. -....+.+..-+.+++..+++..
T Consensus 308 ~~EY-Rk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 308 LDEY-RKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHH-HHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 4332 11111 11167888999999999988654
No 270
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.29 E-value=0.04 Score=65.57 Aligned_cols=130 Identities=18% Similarity=0.158 Sum_probs=72.1
Q ss_pred EEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHHh
Q 036584 227 LVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSL 306 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l 306 (919)
+-|.|+|++|+|||++|+.++.. ....| +.++.+. +. .... ......+...+...-
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~--~~~~f---~~is~~~------~~----~~~~---------g~~~~~~~~~f~~a~ 241 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSD------FV----EMFV---------GVGASRVRDMFEQAK 241 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--cCCCE---EEEehHH------hH----Hhhh---------cccHHHHHHHHHHHH
Confidence 35899999999999999999983 33333 2222221 10 0010 011122333333333
Q ss_pred ccCceEEEEecccch------------hHH----HHHHhhCCC--CCCCcEEEEEecchhhhhhc----CCCCceEecCC
Q 036584 307 EAYSYLMVIDDIWHK------------EDW----VSLKSAFPE--NKIGSRVIITTRIKDVAERS----DDRNYVHELRF 364 (919)
Q Consensus 307 ~~~~~LlVlDdv~~~------------~~~----~~l~~~l~~--~~~gs~iivTtr~~~v~~~~----~~~~~~~~l~~ 364 (919)
...+.+|++|+++.. ..+ ..++..+.. ...+.-+|.||...+..... +-....+.++.
T Consensus 242 ~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~ 321 (644)
T PRK10733 242 KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGL 321 (644)
T ss_pred hcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCC
Confidence 557899999998653 112 223323332 22344555577655433221 11226788888
Q ss_pred CChHhHHHHHHHHhcc
Q 036584 365 LRQDESWQLFCERAFR 380 (919)
Q Consensus 365 L~~~~~~~lf~~~~~~ 380 (919)
.+.++-.++++.+...
T Consensus 322 Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 322 PDVRGREQILKVHMRR 337 (644)
T ss_pred CCHHHHHHHHHHHhhc
Confidence 8888888888877644
No 271
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.23 E-value=0.0034 Score=70.66 Aligned_cols=45 Identities=22% Similarity=0.409 Sum_probs=39.5
Q ss_pred CccccccCHHHHHHHHh----cCCCCcEEEEEEecCCchHHHHHHHHHc
Q 036584 204 NPVGFEDDTDLLLAKLL----DKEQRRLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 204 ~~vGr~~~~~~l~~~L~----~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
+++|.++.+++|++.|. .-+.+.+++.++|++|+||||||+.+++
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 58999999999999993 3344568999999999999999999997
No 272
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.19 E-value=0.015 Score=55.16 Aligned_cols=119 Identities=18% Similarity=0.106 Sum_probs=62.8
Q ss_pred EEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCC---CCCHHHHHHHHHHHhccccccc--ccccCC-------
Q 036584 227 LVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQ---DYKIKDLLLRIIKSFNIMTALE--DLETKT------- 294 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~il~~l~~~~~~~--~~~~~~------- 294 (919)
..|-|++..|.||||+|...+- +..++=..+.++-.-. ......+++.+ ..+....... .....+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4688999999999999988776 3333322344433222 22333333333 1111100000 000011
Q ss_pred HHHHHHHHHHHhcc-CceEEEEecccch-----hHHHHHHhhCCCCCCCcEEEEEecchh
Q 036584 295 EEDLARSLRKSLEA-YSYLMVIDDIWHK-----EDWVSLKSAFPENKIGSRVIITTRIKD 348 (919)
Q Consensus 295 ~~~~~~~l~~~l~~-~~~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~iivTtr~~~ 348 (919)
.....+..++.+.. .-=|+|||++-.. -+.+.+...+.....+.-||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 11223333444433 4459999998643 234556666655566778999999864
No 273
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.14 E-value=0.029 Score=60.77 Aligned_cols=70 Identities=19% Similarity=0.244 Sum_probs=48.5
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCcc----CCCCEEEEEEeCCCCCHHHHHHHHHHHhcc
Q 036584 213 DLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVK----NKFDYCAWVSVSQDYKIKDLLLRIIKSFNI 283 (919)
Q Consensus 213 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 283 (919)
..+.+.|..+=....++-|+|.+|+|||+|+..++-..... ..-..++||+....|+.+.+ .+|++.++.
T Consensus 110 ~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~ 183 (342)
T PLN03186 110 RELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGL 183 (342)
T ss_pred HHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCC
Confidence 45555565554457799999999999999999887532221 11236999999998887665 455665543
No 274
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.13 E-value=0.026 Score=58.29 Aligned_cols=102 Identities=19% Similarity=0.189 Sum_probs=62.0
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccc-----
Q 036584 213 DLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTAL----- 287 (919)
Q Consensus 213 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----- 287 (919)
..+.+.|..+=....++.|+|.+|+|||+||.++.... .+ +=..++|++..+. ..++.+++ .+++.....
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~-~~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g 86 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGA-LK-QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWG 86 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHH-Hh-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCC
Confidence 34445554443456799999999999999999996531 12 2346889988754 34555543 333221100
Q ss_pred ---------c--ccccCCHHHHHHHHHHHhcc-CceEEEEeccc
Q 036584 288 ---------E--DLETKTEEDLARSLRKSLEA-YSYLMVIDDIW 319 (919)
Q Consensus 288 ---------~--~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~ 319 (919)
. .......+.+...+.+.+.. +.-++|+|.+-
T Consensus 87 ~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 87 YLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred CceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0 01122345677777777753 56689999975
No 275
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.13 E-value=0.029 Score=58.07 Aligned_cols=61 Identities=15% Similarity=0.158 Sum_probs=41.3
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHH
Q 036584 213 DLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRI 277 (919)
Q Consensus 213 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 277 (919)
..+.+.|..+=....++.|.|.+|+|||++|.++.... . ..-..++|++..+ +...+.+.+
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeC--CHHHHHHHH
Confidence 34445555554457899999999999999999887531 1 2345688888765 444555543
No 276
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.13 E-value=0.07 Score=55.79 Aligned_cols=134 Identities=22% Similarity=0.130 Sum_probs=71.6
Q ss_pred CHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccc--cc-c
Q 036584 211 DTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIM--TA-L 287 (919)
Q Consensus 211 ~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~--~~-~ 287 (919)
..+.+...+... .+..-++|+|+.|.|||||.+.++.. .. .....+++.-..-... +-..++......- .. .
T Consensus 97 ~~~~~l~~l~~~-~~~~~~~i~g~~g~GKttl~~~l~~~--~~-~~~G~i~~~g~~v~~~-d~~~ei~~~~~~~~q~~~~ 171 (270)
T TIGR02858 97 AADKLLPYLVRN-NRVLNTLIISPPQCGKTTLLRDLARI--LS-TGISQLGLRGKKVGIV-DERSEIAGCVNGVPQHDVG 171 (270)
T ss_pred cHHHHHHHHHhC-CCeeEEEEEcCCCCCHHHHHHHHhCc--cC-CCCceEEECCEEeecc-hhHHHHHHHhccccccccc
Confidence 345555555543 23578999999999999999999973 22 2233444421111000 0112332222211 00 0
Q ss_pred cccccCCHHHHHHHHHHHh-ccCceEEEEecccchhHHHHHHhhCCCCCCCcEEEEEecchhhhhh
Q 036584 288 EDLETKTEEDLARSLRKSL-EAYSYLMVIDDIWHKEDWVSLKSAFPENKIGSRVIITTRIKDVAER 352 (919)
Q Consensus 288 ~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~ 352 (919)
...+..+...-...+...+ ...+-++++|.+-..+.+..+...+. .|..||+||....+...
T Consensus 172 ~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 172 IRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVEDL 234 (270)
T ss_pred ccccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence 0111111011122233333 25788999999988777777766653 47789999987666443
No 277
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.11 E-value=0.042 Score=54.17 Aligned_cols=124 Identities=14% Similarity=0.163 Sum_probs=65.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeC--CCCCHHH------HHHHHHHHhcccccc-cccccCCHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVS--QDYKIKD------LLLRIIKSFNIMTAL-EDLETKTEE 296 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~--~~~~~~~------~~~~il~~l~~~~~~-~~~~~~~~~ 296 (919)
-.+++|.|..|.|||||++.++.. .......+++.-. ...+... .+.++++.++..... ......+..
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGL---LKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 458999999999999999999963 2234444444211 1112211 122234444332110 011222222
Q ss_pred HH-HHHHHHHhccCceEEEEeccc---chhHHHHHHhhCCCC-C-CCcEEEEEecchhhhhh
Q 036584 297 DL-ARSLRKSLEAYSYLMVIDDIW---HKEDWVSLKSAFPEN-K-IGSRVIITTRIKDVAER 352 (919)
Q Consensus 297 ~~-~~~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~l~~~-~-~gs~iivTtr~~~v~~~ 352 (919)
+. .-.+.+.+-..+-++++|+-- +.+..+.+...+... . .+..||++|.+.+....
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 22 223455666678899999864 233333443333321 1 25678888887665533
No 278
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.11 E-value=0.036 Score=54.42 Aligned_cols=37 Identities=38% Similarity=0.623 Sum_probs=29.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEE
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVS 263 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 263 (919)
+..+|.+.|++|+||||+|+.+++ .....+..++++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEe
Confidence 356999999999999999999998 4555565566653
No 279
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.10 E-value=0.099 Score=61.30 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=41.2
Q ss_pred CCCCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcc
Q 036584 201 VEENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 201 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
....++|....+.++.+.+..-......|.|+|..|+|||++|+.+++.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 3467999999999999988765444557889999999999999999974
No 280
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.09 E-value=0.036 Score=55.38 Aligned_cols=106 Identities=14% Similarity=0.140 Sum_probs=51.6
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKS 305 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 305 (919)
-+++.|.|++|.||||+++.+.......+ ..++++ ....... ..+....+... .+...........
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g--~~v~~~-apT~~Aa----~~L~~~~~~~a-------~Ti~~~l~~~~~~ 83 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAG--KRVIGL-APTNKAA----KELREKTGIEA-------QTIHSFLYRIPNG 83 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT----EEEE-ESSHHHH----HHHHHHHTS-E-------EEHHHHTTEECCE
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCC--CeEEEE-CCcHHHH----HHHHHhhCcch-------hhHHHHHhcCCcc
Confidence 46888999999999999999876322222 223333 3322222 22222222110 0000000000000
Q ss_pred -h-----ccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecch
Q 036584 306 -L-----EAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRIK 347 (919)
Q Consensus 306 -l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~ 347 (919)
. ..+.-+||+|++... ..+..+...... .|+|+|+.--..
T Consensus 84 ~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 84 DDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp ECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred cccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 0 123459999999754 466777776664 467888766433
No 281
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.04 E-value=0.11 Score=60.21 Aligned_cols=64 Identities=17% Similarity=0.180 Sum_probs=48.0
Q ss_pred CCCCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCC
Q 036584 201 VEENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQ 266 (919)
Q Consensus 201 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 266 (919)
....++|+...++++.+.+..-......|.|+|..|+|||++|+.+.+.... .-...+.|++..
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r--~~~p~v~v~c~~ 248 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPR--ADKPLVYLNCAA 248 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCc--CCCCeEEEEccc
Confidence 3467999999999999988876555668899999999999999999974221 122345555554
No 282
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.03 E-value=0.035 Score=57.82 Aligned_cols=98 Identities=22% Similarity=0.221 Sum_probs=59.8
Q ss_pred HHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHH-hcccccccccccCC
Q 036584 216 LAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKS-FNIMTALEDLETKT 294 (919)
Q Consensus 216 ~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~-l~~~~~~~~~~~~~ 294 (919)
...|-.+=+..+++=|+|+.|.||||+|.+++-. ....-..++|++....++++.+ +++... +..-. -....+
T Consensus 50 D~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~-~~l~~~~~d~l~---v~~~~~ 123 (279)
T COG0468 50 DEALGGGLPRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERA-KQLGVDLLDNLL---VSQPDT 123 (279)
T ss_pred HHHhcCCcccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHH-HHHHHhhhccee---EecCCC
Confidence 3334444456789999999999999999998864 2233337899999998887654 334444 22211 111122
Q ss_pred HH---HHHHHHHHHhccCceEEEEeccc
Q 036584 295 EE---DLARSLRKSLEAYSYLMVIDDIW 319 (919)
Q Consensus 295 ~~---~~~~~l~~~l~~~~~LlVlDdv~ 319 (919)
.+ +++..+......+--|+|+|.+-
T Consensus 124 ~e~q~~i~~~~~~~~~~~i~LvVVDSva 151 (279)
T COG0468 124 GEQQLEIAEKLARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHHHHHHHHHHHHhccCCCCEEEEecCc
Confidence 22 33444444444446799999873
No 283
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.03 E-value=0.0005 Score=68.74 Aligned_cols=61 Identities=26% Similarity=0.317 Sum_probs=31.6
Q ss_pred hhccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccCh--hhhcCCCCcEEecCCC
Q 036584 606 LFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILPS--SIVKLQRLQTLDFSGD 676 (919)
Q Consensus 606 ~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~--~l~~L~~L~~L~L~~~ 676 (919)
++.+|+.|+||.|+- |. |. .+ ..+..|.+|+.|+|+.|.|..+-. -+.+|++|++|.|..|
T Consensus 36 ic~kMp~lEVLsLSv-Nk-----Is---sL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 36 ICEKMPLLEVLSLSV-NK-----IS---SL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred HHHhcccceeEEeec-cc-----cc---cc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 345556666666655 54 44 33 344555555555555555544422 2445555555555544
No 284
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.03 E-value=0.031 Score=59.97 Aligned_cols=70 Identities=16% Similarity=0.216 Sum_probs=48.0
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCcc----CCCCEEEEEEeCCCCCHHHHHHHHHHHhcc
Q 036584 213 DLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVK----NKFDYCAWVSVSQDYKIKDLLLRIIKSFNI 283 (919)
Q Consensus 213 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 283 (919)
..+.+.|..+=....++-|+|++|+|||+|+.+++-..... ..=..++||+....|+.+.+. ++++.++.
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~ 156 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGV 156 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCC
Confidence 44555565544456799999999999999998877432221 112468999999888877654 45565543
No 285
>PRK05973 replicative DNA helicase; Provisional
Probab=96.00 E-value=0.075 Score=54.22 Aligned_cols=149 Identities=16% Similarity=0.143 Sum_probs=73.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccccc-------ccccccCCHHH
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTA-------LEDLETKTEED 297 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-------~~~~~~~~~~~ 297 (919)
...++.|.|.+|+|||++|.++..... .+-..+++++.... ..++...+. +++.... ....+....+.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a--~~Ge~vlyfSlEes--~~~i~~R~~-s~g~d~~~~~~~~~~d~~d~~~~~~ 137 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM--KSGRTGVFFTLEYT--EQDVRDRLR-ALGADRAQFADLFEFDTSDAICADY 137 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEEeCC--HHHHHHHHH-HcCCChHHhccceEeecCCCCCHHH
Confidence 356999999999999999999876422 22345777777654 344444433 2222110 00011122333
Q ss_pred HHHHHHHHhccCceEEEEecccch------hHHHHHHhhCCC--CCCCcEEEEEecchhhhhhc-CCCCceEecCCCChH
Q 036584 298 LARSLRKSLEAYSYLMVIDDIWHK------EDWVSLKSAFPE--NKIGSRVIITTRIKDVAERS-DDRNYVHELRFLRQD 368 (919)
Q Consensus 298 ~~~~l~~~l~~~~~LlVlDdv~~~------~~~~~l~~~l~~--~~~gs~iivTtr~~~v~~~~-~~~~~~~~l~~L~~~ 368 (919)
+...+.+ ..+.-++|+|-+... .....+...+.. ...|.-||+|+....-...- ......-.| .++-.
T Consensus 138 ii~~l~~--~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~r~~e~~~~~~P~laDl-R~~~~ 214 (237)
T PRK05973 138 IIARLAS--APRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQIDRSFDPSAKPLPDIRDV-RLPNP 214 (237)
T ss_pred HHHHHHH--hhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCCCChhhc-CCCCh
Confidence 3443333 234569999997532 112221111211 24577788887644332221 111001111 12234
Q ss_pred hHHHHHHHHhccC
Q 036584 369 ESWQLFCERAFRN 381 (919)
Q Consensus 369 ~~~~lf~~~~~~~ 381 (919)
--..||.++.|-.
T Consensus 215 ~d~~~f~~~~~~~ 227 (237)
T PRK05973 215 LDLSLFDKACFLN 227 (237)
T ss_pred hhHHHhhhhheec
Confidence 4466777776644
No 286
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.99 E-value=0.025 Score=62.10 Aligned_cols=98 Identities=26% Similarity=0.209 Sum_probs=54.7
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccccc-ccccc
Q 036584 213 DLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTA-LEDLE 291 (919)
Q Consensus 213 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-~~~~~ 291 (919)
..+.+.|..+=....++.|.|.+|+|||||+.+++.. ....-..++|++..+. ...+ +.-+..++.... ..-..
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~ 143 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLA 143 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEc
Confidence 4555555444334579999999999999999999873 2223346888877543 2222 222333332111 00011
Q ss_pred cCCHHHHHHHHHHHhccCceEEEEecc
Q 036584 292 TKTEEDLARSLRKSLEAYSYLMVIDDI 318 (919)
Q Consensus 292 ~~~~~~~~~~l~~~l~~~~~LlVlDdv 318 (919)
..+.+.+.+.+. ..+.-++|+|.+
T Consensus 144 e~~le~I~~~i~---~~~~~lVVIDSI 167 (372)
T cd01121 144 ETNLEDILASIE---ELKPDLVIIDSI 167 (372)
T ss_pred cCcHHHHHHHHH---hcCCcEEEEcch
Confidence 223344433332 335668888887
No 287
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.98 E-value=0.035 Score=59.71 Aligned_cols=69 Identities=17% Similarity=0.192 Sum_probs=47.0
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCcc----CCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 036584 213 DLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVK----NKFDYCAWVSVSQDYKIKDLLLRIIKSFN 282 (919)
Q Consensus 213 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 282 (919)
+.+...|..+=....++.|+|.+|+|||||+..++...... ..-..++|++....++... +.++++.++
T Consensus 83 ~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~ 155 (316)
T TIGR02239 83 KELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYG 155 (316)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcC
Confidence 45556665554557899999999999999999987532221 1223579999888777765 444555443
No 288
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.95 E-value=0.028 Score=61.10 Aligned_cols=46 Identities=22% Similarity=0.214 Sum_probs=39.0
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
+.++|+...+.++.+.+..-......|.|+|..|+||+++|+.+..
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999888877544456789999999999999999986
No 289
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.031 Score=65.85 Aligned_cols=120 Identities=13% Similarity=0.198 Sum_probs=70.8
Q ss_pred CCCccccccCHHHHHHHHhcC-------CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHH
Q 036584 202 EENPVGFEDDTDLLLAKLLDK-------EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLL 274 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 274 (919)
...++|.++.++.+.+.+... .....+....|+.|||||-||+.++.. +-+.=+..+-++.|+- ..+.
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~--Lfg~e~aliR~DMSEy-~EkH-- 564 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA--LFGDEQALIRIDMSEY-MEKH-- 564 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH--hcCCCccceeechHHH-HHHH--
Confidence 357899999999999888642 234568888999999999999999872 2111123333344321 1111
Q ss_pred HHHHHHhcccccccccccCCHHHHHHHHHHHhccCce-EEEEecccch--hHHHHHHhhCCC
Q 036584 275 LRIIKSFNIMTALEDLETKTEEDLARSLRKSLEAYSY-LMVIDDIWHK--EDWVSLKSAFPE 333 (919)
Q Consensus 275 ~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~--~~~~~l~~~l~~ 333 (919)
.+.+-++.+.. .-+-+ + -..|-+..+.++| +|.||+|... +-++-+++.|.+
T Consensus 565 -sVSrLIGaPPG---YVGye--e-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 565 -SVSRLIGAPPG---YVGYE--E-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred -HHHHHhCCCCC---Cceec--c-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 11122222211 11111 1 2345566777887 7777999854 556667776664
No 290
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.94 E-value=0.1 Score=63.08 Aligned_cols=47 Identities=21% Similarity=0.235 Sum_probs=39.3
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..++|+...+..+.+.+..-......|.|.|..|+|||++|+.+++.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 47999999999988877754434567899999999999999999874
No 291
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.93 E-value=0.053 Score=55.31 Aligned_cols=125 Identities=14% Similarity=0.218 Sum_probs=70.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccC-cc----------CCC---CEEEEEEeCCCC------CH---------------
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNND-VK----------NKF---DYCAWVSVSQDY------KI--------------- 270 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~-~~----------~~f---~~~~wv~~~~~~------~~--------------- 270 (919)
-..++|+|+.|.|||||.+.+.--.. .+ ..+ ..+.||.-...+ ++
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 36899999999999999999986211 00 001 245565321111 11
Q ss_pred -------HHHHHHHHHHhcccccc-cccccCCHHHHHHH-HHHHhccCceEEEEeccc------chhHHHHHHhhCCCCC
Q 036584 271 -------KDLLLRIIKSFNIMTAL-EDLETKTEEDLARS-LRKSLEAYSYLMVIDDIW------HKEDWVSLKSAFPENK 335 (919)
Q Consensus 271 -------~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~-l~~~l~~~~~LlVlDdv~------~~~~~~~l~~~l~~~~ 335 (919)
.+...+.++.++...-. ..+...+-.+.++. |.+.|..++=|++||.=- .....-++...+...
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e- 188 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE- 188 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-
Confidence 13333444444331100 02333444555555 456778889999999742 223344455555444
Q ss_pred CCcEEEEEecchhhhhh
Q 036584 336 IGSRVIITTRIKDVAER 352 (919)
Q Consensus 336 ~gs~iivTtr~~~v~~~ 352 (919)
|+.|++.|.+-.....
T Consensus 189 -g~tIl~vtHDL~~v~~ 204 (254)
T COG1121 189 -GKTVLMVTHDLGLVMA 204 (254)
T ss_pred -CCEEEEEeCCcHHhHh
Confidence 8889999988765543
No 292
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.063 Score=62.35 Aligned_cols=153 Identities=18% Similarity=0.219 Sum_probs=86.6
Q ss_pred CccccccCHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHH
Q 036584 204 NPVGFEDDTDLLLAKLLDK-----------EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKD 272 (919)
Q Consensus 204 ~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 272 (919)
++.|.+..++.+.+.+... -...+.+.++|++|.|||.||+.+++ ....+| +.+...
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~f-----i~v~~~----- 310 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRF-----ISVKGS----- 310 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh--hCCCeE-----EEeeCH-----
Confidence 4455555555554444321 13456899999999999999999998 344444 222211
Q ss_pred HHHHHHHHhcccccccccccCCHHHHHHHHHHHhccCceEEEEecccch-------------hHHHHHHhhCCCCC--CC
Q 036584 273 LLLRIIKSFNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHK-------------EDWVSLKSAFPENK--IG 337 (919)
Q Consensus 273 ~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~l~~~~--~g 337 (919)
.++... -......+...+...-+..+..|++|+++.. ....+++..+.... .+
T Consensus 311 ---~l~sk~---------vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~ 378 (494)
T COG0464 311 ---ELLSKW---------VGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEG 378 (494)
T ss_pred ---HHhccc---------cchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCc
Confidence 111111 1112223333333344678999999999642 12334444454322 33
Q ss_pred cEEEEEecchhhhhhc----CCCCceEecCCCChHhHHHHHHHHhcc
Q 036584 338 SRVIITTRIKDVAERS----DDRNYVHELRFLRQDESWQLFCERAFR 380 (919)
Q Consensus 338 s~iivTtr~~~v~~~~----~~~~~~~~l~~L~~~~~~~lf~~~~~~ 380 (919)
..||-||......... +-....+.++.-+.++..+.|+.+...
T Consensus 379 v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 379 VLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRD 425 (494)
T ss_pred eEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcc
Confidence 3344455444333211 122268889999999999999988764
No 293
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.91 E-value=0.046 Score=59.16 Aligned_cols=67 Identities=13% Similarity=0.216 Sum_probs=45.6
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCcc----CCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 036584 214 LLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVK----NKFDYCAWVSVSQDYKIKDLLLRIIKSF 281 (919)
Q Consensus 214 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l 281 (919)
.+...|..+=....++-|+|.+|+|||+++.+++...... ..=..++||+....|+.+.+ .++++.+
T Consensus 83 ~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl-~~~~~~~ 153 (310)
T TIGR02236 83 ELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERI-MQMAEAR 153 (310)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHH-HHHHHHc
Confidence 3444454443456799999999999999999998643221 11137999999988887654 3445544
No 294
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.90 E-value=0.066 Score=52.23 Aligned_cols=116 Identities=22% Similarity=0.308 Sum_probs=60.6
Q ss_pred cEEEEEEecCCchHHHHHHHHHccc---CccC---CCC--EEEEEEeCCCCCHHHHHHHHHHHhccccc--ccccccCCH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNN---DVKN---KFD--YCAWVSVSQDYKIKDLLLRIIKSFNIMTA--LEDLETKTE 295 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~---~~~~---~f~--~~~wv~~~~~~~~~~~~~~il~~l~~~~~--~~~~~~~~~ 295 (919)
-.+++|+|+.|+|||||.+.+..+. .+.. .|. .+.|+ .+ .+.+..+..... .......+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 4589999999999999999986321 1111 111 12332 22 345555543211 001122222
Q ss_pred HHH-HHHHHHHhccC--ceEEEEeccc---chhHHHHHHhhCCC-CCCCcEEEEEecchhhhh
Q 036584 296 EDL-ARSLRKSLEAY--SYLMVIDDIW---HKEDWVSLKSAFPE-NKIGSRVIITTRIKDVAE 351 (919)
Q Consensus 296 ~~~-~~~l~~~l~~~--~~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~~ 351 (919)
.+. .-.+...+-.+ +-++++|+-- +......+...+.. ...|..||++|.+.+...
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 222 22244455555 7788899864 23333333333332 124667888888877654
No 295
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.90 E-value=0.1 Score=56.67 Aligned_cols=89 Identities=19% Similarity=0.235 Sum_probs=47.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhcccccccccccCCHHHHHHHHH
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDY-KIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLR 303 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 303 (919)
+.++|+|+|++|+||||++..++.... ... ..+..++..... ...+-++.....++.+ -....+...+.+.+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~-~~G-kkVglI~aDt~RiaAvEQLk~yae~lgip----v~v~~d~~~L~~aL~ 313 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH-GKK-KTVGFITTDHSRIGTVQQLQDYVKTIGFE----VIAVRDEAAMTRALT 313 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH-HcC-CcEEEEecCCcchHHHHHHHHHhhhcCCc----EEecCCHHHHHHHHH
Confidence 357999999999999999999986322 122 235555543221 1222333333333221 111234555555554
Q ss_pred HHhcc-CceEEEEeccc
Q 036584 304 KSLEA-YSYLMVIDDIW 319 (919)
Q Consensus 304 ~~l~~-~~~LlVlDdv~ 319 (919)
..-.. +.=++++|-.-
T Consensus 314 ~lk~~~~~DvVLIDTaG 330 (436)
T PRK11889 314 YFKEEARVDYILIDTAG 330 (436)
T ss_pred HHHhccCCCEEEEeCcc
Confidence 43221 23477888764
No 296
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.89 E-value=0.058 Score=58.32 Aligned_cols=70 Identities=19% Similarity=0.248 Sum_probs=47.7
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCc----cCCCCEEEEEEeCCCCCHHHHHHHHHHHhcc
Q 036584 213 DLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDV----KNKFDYCAWVSVSQDYKIKDLLLRIIKSFNI 283 (919)
Q Consensus 213 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 283 (919)
..+.++|..+=....++-|+|.+|+|||+|+..++-.... .+.-..++||+....|+.+.+. ++++.++.
T Consensus 113 ~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~-~ia~~~g~ 186 (344)
T PLN03187 113 QALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIV-PIAERFGM 186 (344)
T ss_pred HhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHH-HHHHHcCC
Confidence 3444455544345679999999999999999988643222 1222468999999988877654 45555543
No 297
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.89 E-value=0.063 Score=52.49 Aligned_cols=22 Identities=50% Similarity=0.619 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHHcc
Q 036584 228 VISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
++.++|++|+||||++..++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999998873
No 298
>PRK06696 uridine kinase; Validated
Probab=95.88 E-value=0.0079 Score=61.60 Aligned_cols=42 Identities=29% Similarity=0.327 Sum_probs=33.1
Q ss_pred cccCHHHHHHHHhc-CCCCcEEEEEEecCCchHHHHHHHHHcc
Q 036584 208 FEDDTDLLLAKLLD-KEQRRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 208 r~~~~~~l~~~L~~-~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
|++-+++|.+.+.. ......+|+|.|.+|+||||||+.+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 45556677777764 3345789999999999999999999973
No 299
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.87 E-value=0.019 Score=60.38 Aligned_cols=138 Identities=16% Similarity=0.167 Sum_probs=72.8
Q ss_pred ccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccC-ccCCCCEEE-E---EEeCCCC-----CHHHHH
Q 036584 205 PVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNND-VKNKFDYCA-W---VSVSQDY-----KIKDLL 274 (919)
Q Consensus 205 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~-w---v~~~~~~-----~~~~~~ 274 (919)
+-+|..+...-.++|..++ ...|.+.|.+|.|||.||-...-..- .+..|..++ . +.++++. +.++-+
T Consensus 226 i~prn~eQ~~ALdlLld~d--I~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm 303 (436)
T COG1875 226 IRPRNAEQRVALDLLLDDD--IDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKM 303 (436)
T ss_pred cCcccHHHHHHHHHhcCCC--CCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhc
Confidence 3456677777777787765 88999999999999999876653222 233343222 1 1233221 112211
Q ss_pred HHHHHHhcccccc-cccccCCHHHHHHHH-H---------HHhccC---ceEEEEecccchhHHHHHHhhCCCCCCCcEE
Q 036584 275 LRIIKSFNIMTAL-EDLETKTEEDLARSL-R---------KSLEAY---SYLMVIDDIWHKEDWVSLKSAFPENKIGSRV 340 (919)
Q Consensus 275 ~~il~~l~~~~~~-~~~~~~~~~~~~~~l-~---------~~l~~~---~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~i 340 (919)
.--+..+..+... ....... +...+.+ . .+++|+ +-++|+|.+.+... .+++..+.+.+.||||
T Consensus 304 ~PWmq~i~DnLE~L~~~~~~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp-heikTiltR~G~GsKI 381 (436)
T COG1875 304 GPWMQAIFDNLEVLFSPNEPG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP-HELKTILTRAGEGSKI 381 (436)
T ss_pred cchHHHHHhHHHHHhcccccc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH-HHHHHHHHhccCCCEE
Confidence 1111111110000 0001111 2222222 1 123444 35899999976532 3556666778899999
Q ss_pred EEEecc
Q 036584 341 IITTRI 346 (919)
Q Consensus 341 ivTtr~ 346 (919)
+.|.-.
T Consensus 382 Vl~gd~ 387 (436)
T COG1875 382 VLTGDP 387 (436)
T ss_pred EEcCCH
Confidence 988753
No 300
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.86 E-value=0.04 Score=54.21 Aligned_cols=121 Identities=16% Similarity=0.034 Sum_probs=60.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccc----------cccCCH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALED----------LETKTE 295 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~----------~~~~~~ 295 (919)
-.+++|.|+.|.|||||++.++.-. ......+++.-. +.......+-..+......+. ....+.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDL---KPQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC---CCCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 4589999999999999999999732 222333443221 111111111111111000000 011222
Q ss_pred HHHH-HHHHHHhccCceEEEEecccc---hhHHHHHHhhCCCCCCCcEEEEEecchhhhhh
Q 036584 296 EDLA-RSLRKSLEAYSYLMVIDDIWH---KEDWVSLKSAFPENKIGSRVIITTRIKDVAER 352 (919)
Q Consensus 296 ~~~~-~~l~~~l~~~~~LlVlDdv~~---~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~ 352 (919)
.+.+ -.+.+.+-.++-++++|+... ....+.+...+.....+..||++|.+.+....
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 162 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH 162 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh
Confidence 2222 224455666788999998753 22222332222221235678888887776653
No 301
>PTZ00035 Rad51 protein; Provisional
Probab=95.84 E-value=0.069 Score=57.99 Aligned_cols=69 Identities=14% Similarity=0.196 Sum_probs=46.5
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCc----cCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 036584 213 DLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDV----KNKFDYCAWVSVSQDYKIKDLLLRIIKSFN 282 (919)
Q Consensus 213 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 282 (919)
..+.++|..+=....++.|+|.+|+|||||+..++-.... ...=..++|++....|+.+. +.++++.++
T Consensus 105 ~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g 177 (337)
T PTZ00035 105 TQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFG 177 (337)
T ss_pred HHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhC
Confidence 4555566555445779999999999999999988753221 11224577999887777666 444455543
No 302
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.82 E-value=0.074 Score=55.13 Aligned_cols=145 Identities=16% Similarity=0.199 Sum_probs=73.5
Q ss_pred EEEEEecCCchHHHHHHHHHcccCccC----------CCCEEEEEEeCCCC-CHHHHHHHHHHHhccccc----------
Q 036584 228 VISIYGMGGLGKTTLARKLYHNNDVKN----------KFDYCAWVSVSQDY-KIKDLLLRIIKSFNIMTA---------- 286 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~~~~~~~----------~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~---------- 286 (919)
+..|+|++|+|||+||..++-...... .=..+++++...+. .+..-+..+...+.....
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 668999999999999999986321111 11235555555433 244455555554421000
Q ss_pred cccc--cc---CCHHHHHHHHHHHh-ccCceEEEEeccc--------chhHHHHHHhhCCC--CCCCcEEEEEecchhhh
Q 036584 287 LEDL--ET---KTEEDLARSLRKSL-EAYSYLMVIDDIW--------HKEDWVSLKSAFPE--NKIGSRVIITTRIKDVA 350 (919)
Q Consensus 287 ~~~~--~~---~~~~~~~~~l~~~l-~~~~~LlVlDdv~--------~~~~~~~l~~~l~~--~~~gs~iivTtr~~~v~ 350 (919)
.... .. .........+.+.+ ..+.-+||+|-+- +......+...+.. ...|+.||+++....-.
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~~ 162 (239)
T cd01125 83 IQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKGS 162 (239)
T ss_pred CCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCccc
Confidence 0000 00 01122333344433 4567799999752 22334444443322 23467777777644221
Q ss_pred h--------------hcCCCCceEecCCCChHhHHH
Q 036584 351 E--------------RSDDRNYVHELRFLRQDESWQ 372 (919)
Q Consensus 351 ~--------------~~~~~~~~~~l~~L~~~~~~~ 372 (919)
. ........+.+.+++.+++.+
T Consensus 163 ~~~~~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~ 198 (239)
T cd01125 163 AKDGDTQEAARGASALVDGARWVRALTRMTSEEAEK 198 (239)
T ss_pred ccCcccccccCcHHHHhcccceEEEEeeCCHHHHHh
Confidence 1 001111467788888888776
No 303
>PRK07667 uridine kinase; Provisional
Probab=95.82 E-value=0.012 Score=58.72 Aligned_cols=38 Identities=29% Similarity=0.487 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcc
Q 036584 212 TDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 212 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
.+.+.+.+.....+..+|+|.|.+|.||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45677777766666789999999999999999999873
No 304
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.81 E-value=0.0035 Score=62.90 Aligned_cols=64 Identities=28% Similarity=0.378 Sum_probs=41.8
Q ss_pred chhhhccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCC--Cc-cccChhhhcCCCCcEEecCCC
Q 036584 603 LPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNS--NI-GILPSSIVKLQRLQTLDFSGD 676 (919)
Q Consensus 603 l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~--~i-~~LP~~l~~L~~L~~L~L~~~ 676 (919)
+....-.+..|..|++.+ +. +. .+ ..+-.|++|++|.++.| ++ ..++....++++|++|++++|
T Consensus 35 ~~gl~d~~~~le~ls~~n-~g-----lt---t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVIN-VG-----LT---TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred cccccccccchhhhhhhc-cc-----ee---ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence 344445556666666666 55 43 22 34556778888888888 44 566666667788888888888
No 305
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.81 E-value=0.011 Score=56.88 Aligned_cols=103 Identities=21% Similarity=0.126 Sum_probs=62.7
Q ss_pred CCceeEEEceec-CCCCcchhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccccCeeEEEcCCCCcccceeE
Q 036584 786 QCLVDLRLSGRM-KKLPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHYVKKLGCRAEGFPLLEILQ 864 (919)
Q Consensus 786 ~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~ 864 (919)
.+...++|++|- ..++ .+..+ +.|..|.|++|.|+...+..-..+|+|..|.|.+|+...-.-......+|+|++|.
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l-~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHL-PRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhcc-cCCCc-cccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 355667777663 2222 22244 88888888888887655444446788888888866543222122345678888888
Q ss_pred EecCCcccEE----EccCCcccccceEEcc
Q 036584 865 LDADGLVEWQ----VEEGAMPVLRGLKIAA 890 (919)
Q Consensus 865 l~~~~l~~~~----~~~~~~p~L~~L~l~~ 890 (919)
+..|..+.-. .-...+|+|+.|+...
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 8755444321 1223578888887765
No 306
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.80 E-value=0.053 Score=58.81 Aligned_cols=68 Identities=15% Similarity=0.229 Sum_probs=46.2
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCC----CCEEEEEEeCCCCCHHHHHHHHHHHh
Q 036584 213 DLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNK----FDYCAWVSVSQDYKIKDLLLRIIKSF 281 (919)
Q Consensus 213 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~il~~l 281 (919)
..+.+.|..+=....++-|+|++|+|||+++.+++........ =..++||+....|+...+. ++++.+
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~ 160 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEAL 160 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHc
Confidence 3444555444345679999999999999999999864222111 1479999999888876654 444444
No 307
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.78 E-value=0.092 Score=49.49 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=56.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHH-HHHHHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEED-LARSLRK 304 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~-~~~~l~~ 304 (919)
-.+++|+|..|.|||||++.+... .......+|+.-.. .+.... . .+..+ ..-.+.+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~---~~~~~G~i~~~~~~-------------~i~~~~---~---lS~G~~~rv~lar 83 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGE---LEPDEGIVTWGSTV-------------KIGYFE---Q---LSGGEKMRLALAK 83 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC---CCCCceEEEECCeE-------------EEEEEc---c---CCHHHHHHHHHHH
Confidence 468999999999999999999863 22334444442110 000000 0 11111 2222455
Q ss_pred HhccCceEEEEeccc---chhHHHHHHhhCCCCCCCcEEEEEecchhhhhh
Q 036584 305 SLEAYSYLMVIDDIW---HKEDWVSLKSAFPENKIGSRVIITTRIKDVAER 352 (919)
Q Consensus 305 ~l~~~~~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~ 352 (919)
.+-.++-++++|+-- +......+...+... +..||++|.+.+....
T Consensus 84 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 84 LLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 566667899999864 333333343333322 2457777777665543
No 308
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.77 E-value=0.044 Score=54.28 Aligned_cols=114 Identities=18% Similarity=0.299 Sum_probs=69.3
Q ss_pred CCccccccCHHHHHHHHhc--CCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 036584 203 ENPVGFEDDTDLLLAKLLD--KEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKS 280 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 280 (919)
..++|.|...+.+++=... ......-|.+||.-|.|||.|++.+.+ .+....-. -|.+...
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k~------------- 122 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDKE------------- 122 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcHH-------------
Confidence 4678998888887654432 112245688999999999999999998 34433322 2333211
Q ss_pred hcccccccccccCCHHHHHHHHHHHh--ccCceEEEEeccc---chhHHHHHHhhCCCC---CCCcEEEEEecch
Q 036584 281 FNIMTALEDLETKTEEDLARSLRKSL--EAYSYLMVIDDIW---HKEDWVSLKSAFPEN---KIGSRVIITTRIK 347 (919)
Q Consensus 281 l~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~---~~~~~~~l~~~l~~~---~~gs~iivTtr~~ 347 (919)
+-.+.. .|.+.| ...||.|+.||+. ..+.+..++..+..+ .+...++..|-++
T Consensus 123 ----------dl~~Lp----~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 123 ----------DLATLP----DLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred ----------HHhhHH----HHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 011112 233333 4578999999985 335678888887753 2344455555443
No 309
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.76 E-value=0.0089 Score=59.77 Aligned_cols=93 Identities=24% Similarity=0.238 Sum_probs=48.6
Q ss_pred EEEEEEecCCchHHHHHHHHHcccCccCCC--------CEEEEEEeCCCC-CHHHHHHHHHHHhccccccc--c------
Q 036584 227 LVISIYGMGGLGKTTLARKLYHNNDVKNKF--------DYCAWVSVSQDY-KIKDLLLRIIKSFNIMTALE--D------ 289 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f--------~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~--~------ 289 (919)
.++.|+|++|+||||++..+.........| ..++|++..... .....+..+........... .
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~ 112 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGC 112 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-E
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeecccccc
Confidence 489999999999999999888753332222 358888887663 22233333332221000000 0
Q ss_pred -------cccCCHHHHHHHHHHHhcc--CceEEEEeccc
Q 036584 290 -------LETKTEEDLARSLRKSLEA--YSYLMVIDDIW 319 (919)
Q Consensus 290 -------~~~~~~~~~~~~l~~~l~~--~~~LlVlDdv~ 319 (919)
......+...+.+.+.+.. +.-++|+|.+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~ 151 (193)
T PF13481_consen 113 IRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQ 151 (193)
T ss_dssp E---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GG
T ss_pred ceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHH
Confidence 0011124456667777654 46799999764
No 310
>PRK04328 hypothetical protein; Provisional
Probab=95.72 E-value=0.037 Score=57.65 Aligned_cols=52 Identities=17% Similarity=0.227 Sum_probs=36.3
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCC
Q 036584 214 LLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQD 267 (919)
Q Consensus 214 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 267 (919)
.+.+.|..+=....++.|.|.+|+|||+||.++.... . ..-..++|++..+.
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~-~-~~ge~~lyis~ee~ 62 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGVYVALEEH 62 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHH-H-hcCCcEEEEEeeCC
Confidence 4444454443346799999999999999999987631 2 22345788888764
No 311
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.71 E-value=0.0047 Score=36.96 Aligned_cols=21 Identities=38% Similarity=0.678 Sum_probs=12.7
Q ss_pred cceEEeecCCCccccChhhhc
Q 036584 644 HLKYLGLRNSNIGILPSSIVK 664 (919)
Q Consensus 644 ~Lr~L~L~~~~i~~LP~~l~~ 664 (919)
+|++|+|++|.|+.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666665543
No 312
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.70 E-value=0.072 Score=56.02 Aligned_cols=91 Identities=19% Similarity=0.190 Sum_probs=48.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCH--HHHHHHHHHHhcccccccccccCCHHH-HHHH
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKI--KDLLLRIIKSFNIMTALEDLETKTEED-LARS 301 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~~~-~~~~ 301 (919)
..+++.++|++|+||||.+..++.. ....-..+.+++... +.. .+-+....+..+..... .....+... ....
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~-~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIK-QKEGADPAAVAFDA 146 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEe-CCCCCCHHHHHHHH
Confidence 4689999999999999999888863 322223466665542 322 23334444444422110 001122222 2333
Q ss_pred HHHHhccCceEEEEeccc
Q 036584 302 LRKSLEAYSYLMVIDDIW 319 (919)
Q Consensus 302 l~~~l~~~~~LlVlDdv~ 319 (919)
+.....+..=++++|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 444334444578889764
No 313
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.67 E-value=0.018 Score=57.09 Aligned_cols=79 Identities=18% Similarity=0.140 Sum_probs=43.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHH
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRK 304 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 304 (919)
++.+|+|.|.+|.||||+|+.++. .++..+ ++-++.. +.-.-....-............+..+.+-+.+.|..
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~--~~~~~~--~~~I~~D---~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~ 79 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSE--QLGVEK--VVVISLD---DYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKD 79 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH--HhCcCc--ceEeecc---ccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHH
Confidence 467999999999999999999998 444331 1112111 110011111110011111012345667777888888
Q ss_pred HhccCc
Q 036584 305 SLEAYS 310 (919)
Q Consensus 305 ~l~~~~ 310 (919)
.+++++
T Consensus 80 L~~g~~ 85 (218)
T COG0572 80 LKQGKP 85 (218)
T ss_pred HHcCCc
Confidence 877776
No 314
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.67 E-value=0.08 Score=51.75 Aligned_cols=122 Identities=19% Similarity=0.147 Sum_probs=62.4
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccc-ccc--------CCHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALED-LET--------KTEE 296 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~-~~~--------~~~~ 296 (919)
-.+++|+|+.|.|||||++.++... ......+++.-....... ..+...+..-...+. ... .+..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 4589999999999999999998632 233445554321111100 111111111000000 000 1122
Q ss_pred HHHH-HHHHHhccCceEEEEecccc---hhHHHHHHhhCCCC-CCCcEEEEEecchhhhhhc
Q 036584 297 DLAR-SLRKSLEAYSYLMVIDDIWH---KEDWVSLKSAFPEN-KIGSRVIITTRIKDVAERS 353 (919)
Q Consensus 297 ~~~~-~l~~~l~~~~~LlVlDdv~~---~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~~~ 353 (919)
+.++ .+...+-.++-++++|+--. ......+...+... ..|..||++|.+......+
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~ 161 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERL 161 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHh
Confidence 2222 35566677888999999743 22233333333221 1256788888887765543
No 315
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.63 E-value=0.015 Score=56.38 Aligned_cols=82 Identities=21% Similarity=0.272 Sum_probs=43.1
Q ss_pred EEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccC-CHHHHHHHHHHHh
Q 036584 228 VISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETK-TEEDLARSLRKSL 306 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~-~~~~~~~~l~~~l 306 (919)
++.|.|.+|.||||+|..+... ... .++++.-...++ .+....|......... .+... ....+...+....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~--~~~---~~~~iat~~~~~-~e~~~ri~~h~~~R~~--~w~t~E~~~~l~~~i~~~~ 74 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ--SGL---QVLYIATAQPFD-DEMAARIAHHRQRRPA--HWQTVEEPLDLAELLRADA 74 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH--cCC---CcEeCcCCCCCh-HHHHHHHHHHHhcCCC--CCeEecccccHHHHHHhhc
Confidence 6899999999999999999863 211 134444444333 3444444443322211 11111 1113334444333
Q ss_pred ccCceEEEEecc
Q 036584 307 EAYSYLMVIDDI 318 (919)
Q Consensus 307 ~~~~~LlVlDdv 318 (919)
.+ .-++++|.+
T Consensus 75 ~~-~~~VlID~L 85 (170)
T PRK05800 75 AP-GRCVLVDCL 85 (170)
T ss_pred CC-CCEEEehhH
Confidence 32 337888986
No 316
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.63 E-value=0.0093 Score=55.21 Aligned_cols=23 Identities=43% Similarity=0.549 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHHcc
Q 036584 227 LVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
.-|.|.||+|+||||+++++.+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHH
Confidence 46899999999999999999974
No 317
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.60 E-value=0.066 Score=51.73 Aligned_cols=115 Identities=16% Similarity=0.098 Sum_probs=60.8
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCC--CCHHHHHHHHHHHhcccccccccccCCHHHH-HHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQD--YKIKDLLLRIIKSFNIMTALEDLETKTEEDL-ARSL 302 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~-~~~l 302 (919)
-.+++|.|+.|.|||||.+.++.. .......+++.-... .+.....+ ..+... ...+..+. .-.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~------~qLS~G~~qrl~l 93 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDARR---AGIAMV------YQLSVGERQMVEI 93 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcCCHHHHHh---cCeEEE------EecCHHHHHHHHH
Confidence 458999999999999999999863 233445555532111 11111111 111110 00222222 2234
Q ss_pred HHHhccCceEEEEecccc---hhHHHHHHhhCCC-CCCCcEEEEEecchhhhhh
Q 036584 303 RKSLEAYSYLMVIDDIWH---KEDWVSLKSAFPE-NKIGSRVIITTRIKDVAER 352 (919)
Q Consensus 303 ~~~l~~~~~LlVlDdv~~---~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~~~ 352 (919)
.+.+-.++-++++|+--. ......+...+.. ...|..||++|.+......
T Consensus 94 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 94 ARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred HHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 455666788999998642 2333333333322 1235678888887764433
No 318
>PRK04040 adenylate kinase; Provisional
Probab=95.59 E-value=0.028 Score=55.61 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036584 227 LVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
.+|+|+|++|+||||+++.+..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 319
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.57 E-value=0.064 Score=59.67 Aligned_cols=92 Identities=14% Similarity=0.161 Sum_probs=51.1
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccc-cc-cccccCC-----HHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMT-AL-EDLETKT-----EEDL 298 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~-~~-~~~~~~~-----~~~~ 298 (919)
-..++|+|..|+|||||++.+... .....++++..-....+..++....+....... .. ...+... ....
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l---~~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARA---DAFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC---CCCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 458999999999999999988863 223334555544344455554444444331110 00 0111111 1122
Q ss_pred HHHHHHHh--ccCceEEEEecccc
Q 036584 299 ARSLRKSL--EAYSYLMVIDDIWH 320 (919)
Q Consensus 299 ~~~l~~~l--~~~~~LlVlDdv~~ 320 (919)
.-.+.+++ +++..|+++||+-.
T Consensus 242 a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccchHH
Confidence 23334444 58899999999843
No 320
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.54 E-value=0.082 Score=57.70 Aligned_cols=89 Identities=22% Similarity=0.180 Sum_probs=49.1
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCC-CCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQD-YKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRK 304 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 304 (919)
..++.++|+.|+||||++.++............+..++.... ....+.++...+.++.... ...+..++...+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~----~~~~~~~l~~~l~- 211 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH----AVKDGGDLQLALA- 211 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE----ecCCcccHHHHHH-
Confidence 469999999999999999999873221211234566654322 2344455555555543221 1112223333333
Q ss_pred HhccCceEEEEecccc
Q 036584 305 SLEAYSYLMVIDDIWH 320 (919)
Q Consensus 305 ~l~~~~~LlVlDdv~~ 320 (919)
.+.++ -++++|..-.
T Consensus 212 ~l~~~-DlVLIDTaG~ 226 (374)
T PRK14722 212 ELRNK-HMVLIDTIGM 226 (374)
T ss_pred HhcCC-CEEEEcCCCC
Confidence 34444 5666999853
No 321
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.53 E-value=0.19 Score=48.77 Aligned_cols=24 Identities=33% Similarity=0.306 Sum_probs=21.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
-.+++|+|+.|.|||||++.+...
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999874
No 322
>PRK08233 hypothetical protein; Provisional
Probab=95.52 E-value=0.037 Score=54.67 Aligned_cols=24 Identities=42% Similarity=0.614 Sum_probs=21.9
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..+|+|.|.+|+||||||+.++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999974
No 323
>PRK10867 signal recognition particle protein; Provisional
Probab=95.50 E-value=0.077 Score=59.29 Aligned_cols=24 Identities=46% Similarity=0.537 Sum_probs=20.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHHc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
...+|.++|++|+||||.+..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999998877775
No 324
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.49 E-value=0.16 Score=50.96 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=35.2
Q ss_pred HHHHHHhccCceEEEEeccc---chhHHHHHHhhCCC--CCCCcEEEEEecchhhhhhcC
Q 036584 300 RSLRKSLEAYSYLMVIDDIW---HKEDWVSLKSAFPE--NKIGSRVIITTRIKDVAERSD 354 (919)
Q Consensus 300 ~~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~iivTtr~~~v~~~~~ 354 (919)
-.+.+.|-..+-+|+-|+=- +.+.-+.+...+.. ...|..||+.|.+..++..+.
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 34666777788899999732 22222333333332 234778999999999998764
No 325
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.47 E-value=0.096 Score=51.74 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 036584 228 VISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~ 248 (919)
+|.|+|++|+||||+|+.++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 326
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.46 E-value=0.049 Score=60.31 Aligned_cols=47 Identities=30% Similarity=0.417 Sum_probs=35.2
Q ss_pred CCCccccccCHHHHHHHHhc----------CC--C----CcEEEEEEecCCchHHHHHHHHHc
Q 036584 202 EENPVGFEDDTDLLLAKLLD----------KE--Q----RRLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~----------~~--~----~~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
...++|.++.++.+...+.. .. . ....|.++|++|+|||++|+.++.
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 45688998888887665521 11 0 135799999999999999999997
No 327
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.45 E-value=0.16 Score=49.50 Aligned_cols=23 Identities=43% Similarity=0.457 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
-.+++|+|+.|.|||||++.+..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 45999999999999999999986
No 328
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.065 Score=57.56 Aligned_cols=99 Identities=24% Similarity=0.185 Sum_probs=59.9
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccccc-cccc
Q 036584 212 TDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTA-LEDL 290 (919)
Q Consensus 212 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-~~~~ 290 (919)
+.++.+.|-.+=-.-.+|.|-|-+|+|||||.-+++.+ ....- .+.+|+-.+.... ++--+..++.... ..-.
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsGEES~~Q---iklRA~RL~~~~~~l~l~ 152 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSGEESLQQ---IKLRADRLGLPTNNLYLL 152 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeCCcCHHH---HHHHHHHhCCCccceEEe
Confidence 45555555554334579999999999999999999984 44333 6888887765332 2223334432211 0012
Q ss_pred ccCCHHHHHHHHHHHhccCceEEEEeccc
Q 036584 291 ETKTEEDLARSLRKSLEAYSYLMVIDDIW 319 (919)
Q Consensus 291 ~~~~~~~~~~~l~~~l~~~~~LlVlDdv~ 319 (919)
.+.+.+++...+. +.++-++|+|-+.
T Consensus 153 aEt~~e~I~~~l~---~~~p~lvVIDSIQ 178 (456)
T COG1066 153 AETNLEDIIAELE---QEKPDLVVIDSIQ 178 (456)
T ss_pred hhcCHHHHHHHHH---hcCCCEEEEeccc
Confidence 2334444444433 4678899999984
No 329
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.42 E-value=0.055 Score=57.40 Aligned_cols=40 Identities=28% Similarity=0.282 Sum_probs=28.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcccCcc-CCCCEEEEEEeC
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHNNDVK-NKFDYCAWVSVS 265 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~ 265 (919)
..+++.|+|++|+||||++..++...... +.+ .+..|+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D 233 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITTD 233 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECC
Confidence 35699999999999999999988642222 222 45666654
No 330
>PRK13695 putative NTPase; Provisional
Probab=95.39 E-value=0.037 Score=54.24 Aligned_cols=22 Identities=45% Similarity=0.511 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHHcc
Q 036584 228 VISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
-|+|.|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998874
No 331
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.39 E-value=0.11 Score=53.42 Aligned_cols=52 Identities=19% Similarity=0.200 Sum_probs=35.5
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCC
Q 036584 214 LLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQD 267 (919)
Q Consensus 214 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 267 (919)
.+.+.|..+=....++.|.|.+|+||||||..++... . ..-..++|++....
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~-~-~~g~~~~~is~e~~ 59 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKG-L-RDGDPVIYVTTEES 59 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHH-H-hcCCeEEEEEccCC
Confidence 3444444443446799999999999999999877531 1 22356888887544
No 332
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.38 E-value=0.019 Score=58.94 Aligned_cols=101 Identities=27% Similarity=0.248 Sum_probs=59.4
Q ss_pred HHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccc---------
Q 036584 215 LLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMT--------- 285 (919)
Q Consensus 215 l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~--------- 285 (919)
+.+.|..+=....++.|.|.+|+|||+||.++......+ .=+.++|++..++. +++.+.+ +.++...
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~-~ge~vlyvs~ee~~--~~l~~~~-~s~g~d~~~~~~~g~l 83 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKN-FGEKVLYVSFEEPP--EELIENM-KSFGWDLEEYEDSGKL 83 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH-HT--EEEEESSS-H--HHHHHHH-HTTTS-HHHHHHTTSE
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhh-cCCcEEEEEecCCH--HHHHHHH-HHcCCcHHHHhhcCCE
Confidence 344443432346799999999999999999987531111 02347888886553 3444332 2333210
Q ss_pred ----cccccc---cCCHHHHHHHHHHHhcc-CceEEEEeccc
Q 036584 286 ----ALEDLE---TKTEEDLARSLRKSLEA-YSYLMVIDDIW 319 (919)
Q Consensus 286 ----~~~~~~---~~~~~~~~~~l~~~l~~-~~~LlVlDdv~ 319 (919)
..+... ..+.+.+...+.+.++. +...+|+|.+.
T Consensus 84 ~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 84 KIIDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp EEEESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred EEEecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 000000 35677888888887753 55799999874
No 333
>PRK14974 cell division protein FtsY; Provisional
Probab=95.38 E-value=0.11 Score=56.09 Aligned_cols=92 Identities=17% Similarity=0.171 Sum_probs=47.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCC--HHHHHHHHHHHhcccccccccccCCHHHH-HHH
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYK--IKDLLLRIIKSFNIMTALEDLETKTEEDL-ARS 301 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~~-~~~ 301 (919)
+..+|.++|++|+||||++..++.... ...+ .++.+.. ..+. ..+.++.....++..... .....+.... ...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~-~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIK-HKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceec-ccCCCCHHHHHHHH
Confidence 467999999999999998888876321 1223 2444432 2222 223445555555432210 1112222232 232
Q ss_pred HHHHhccCceEEEEecccc
Q 036584 302 LRKSLEAYSYLMVIDDIWH 320 (919)
Q Consensus 302 l~~~l~~~~~LlVlDdv~~ 320 (919)
+...-....=++++|-...
T Consensus 215 i~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHHhCCCCEEEEECCCc
Confidence 3322222223899998853
No 334
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.37 E-value=0.037 Score=58.00 Aligned_cols=89 Identities=20% Similarity=0.226 Sum_probs=51.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKS 305 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 305 (919)
...|.|.|+.|.||||+++.+... +...-..++.+.-...+....+ .++.. ...........++..
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~--i~~~~~~iitiEdp~E~~~~~~-----~q~~v-------~~~~~~~~~~~l~~~ 145 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSE--LNTPEKNIITVEDPVEYQIPGI-----NQVQV-------NEKAGLTFARGLRAI 145 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhh--hCCCCCeEEEECCCceecCCCc-----eEEEe-------CCcCCcCHHHHHHHH
Confidence 458999999999999999988763 3222122333332222111110 11110 111111345666777
Q ss_pred hccCceEEEEecccchhHHHHHH
Q 036584 306 LEAYSYLMVIDDIWHKEDWVSLK 328 (919)
Q Consensus 306 l~~~~~LlVlDdv~~~~~~~~l~ 328 (919)
|+..+=.|+++++.+.+....+.
T Consensus 146 lR~~PD~i~vgEiR~~e~a~~~~ 168 (264)
T cd01129 146 LRQDPDIIMVGEIRDAETAEIAV 168 (264)
T ss_pred hccCCCEEEeccCCCHHHHHHHH
Confidence 88888999999999887654433
No 335
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.35 E-value=0.031 Score=62.19 Aligned_cols=46 Identities=28% Similarity=0.379 Sum_probs=34.5
Q ss_pred CCccccccCHHHHHHHHhcC--------------CCCcEEEEEEecCCchHHHHHHHHHc
Q 036584 203 ENPVGFEDDTDLLLAKLLDK--------------EQRRLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~--------------~~~~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
..+||.+..++.+...+... ......|.++|++|+|||+||+.++.
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 45899998888775554211 01235689999999999999999987
No 336
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.34 E-value=0.13 Score=52.74 Aligned_cols=130 Identities=15% Similarity=0.230 Sum_probs=67.8
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccC-C---------------C-CEEEEEEeCCC---------------------
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKN-K---------------F-DYCAWVSVSQD--------------------- 267 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-~---------------f-~~~~wv~~~~~--------------------- 267 (919)
-.+++|.|+.|+|||||.+.++.-..... . + ..+.+|.-+..
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~ 107 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGL 107 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCccccc
Confidence 46999999999999999999986211100 0 0 01222211100
Q ss_pred -----CCHHHHHHHHHHHhccccccc-ccccCCHHHHHHH-HHHHhccCceEEEEecccch---hHHHHHHhhCCC--CC
Q 036584 268 -----YKIKDLLLRIIKSFNIMTALE-DLETKTEEDLARS-LRKSLEAYSYLMVIDDIWHK---EDWVSLKSAFPE--NK 335 (919)
Q Consensus 268 -----~~~~~~~~~il~~l~~~~~~~-~~~~~~~~~~~~~-l~~~l~~~~~LlVlDdv~~~---~~~~~l~~~l~~--~~ 335 (919)
....+...+.++.++...-.. .....+-.+.+.. +...|..++=+|+||+=-+. ..-.++...+.+ ..
T Consensus 108 ~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~ 187 (258)
T COG1120 108 FGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE 187 (258)
T ss_pred ccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHh
Confidence 011223444455444321100 2233333444444 45567777788899974221 111122222221 23
Q ss_pred CCcEEEEEecchhhhhhcCC
Q 036584 336 IGSRVIITTRIKDVAERSDD 355 (919)
Q Consensus 336 ~gs~iivTtr~~~v~~~~~~ 355 (919)
.|..||+++.+...|...+.
T Consensus 188 ~~~tvv~vlHDlN~A~ryad 207 (258)
T COG1120 188 KGLTVVMVLHDLNLAARYAD 207 (258)
T ss_pred cCCEEEEEecCHHHHHHhCC
Confidence 46779999999988877654
No 337
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.34 E-value=0.068 Score=55.32 Aligned_cols=95 Identities=14% Similarity=0.142 Sum_probs=56.6
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCc--cCCCCEEEEEEeCCCCC-HHHHHHHHHHHhcccccc---cccccCC-----
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDV--KNKFDYCAWVSVSQDYK-IKDLLLRIIKSFNIMTAL---EDLETKT----- 294 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~--~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~~~~---~~~~~~~----- 294 (919)
-+-++|.|..|+|||+|+..+.++... +.+-+.++++-+++... ..+++.++...-...... ...+...
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 346799999999999999999875331 23347788888887654 445555554431111100 0111111
Q ss_pred HHHHHHHHHHHh--c-cCceEEEEecccc
Q 036584 295 EEDLARSLRKSL--E-AYSYLMVIDDIWH 320 (919)
Q Consensus 295 ~~~~~~~l~~~l--~-~~~~LlVlDdv~~ 320 (919)
.....-.+.+++ + +++.|+++||+-.
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 112233345555 3 6899999999854
No 338
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.34 E-value=0.084 Score=57.19 Aligned_cols=100 Identities=22% Similarity=0.250 Sum_probs=52.1
Q ss_pred cEEEEEEecCCchHHH-HHHHHHcccCccCCCCEEEEEEeCCC-CCHHHHHHHHHHHhcccccccccccCCHHHHHHHHH
Q 036584 226 RLVISIYGMGGLGKTT-LARKLYHNNDVKNKFDYCAWVSVSQD-YKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLR 303 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTt-La~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 303 (919)
.++|.+||+.|+|||| ||+..++-.....+ ..+..|+...- ....+-++...+-++.+.. ...+..++...+.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~-~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~----vv~~~~el~~ai~ 277 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKK-KKVAIITTDTYRIGAVEQLKTYADIMGVPLE----VVYSPKELAEAIE 277 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccC-cceEEEEeccchhhHHHHHHHHHHHhCCceE----EecCHHHHHHHHH
Confidence 6899999999999987 77776653212222 34666665432 1233444444444444321 1233344444443
Q ss_pred HHhccCceEEEEecccc----hhHHHHHHhhCC
Q 036584 304 KSLEAYSYLMVIDDIWH----KEDWVSLKSAFP 332 (919)
Q Consensus 304 ~~l~~~~~LlVlDdv~~----~~~~~~l~~~l~ 332 (919)
. +++. =+|.+|-+.. .....++..++.
T Consensus 278 ~-l~~~-d~ILVDTaGrs~~D~~~i~el~~~~~ 308 (407)
T COG1419 278 A-LRDC-DVILVDTAGRSQYDKEKIEELKELID 308 (407)
T ss_pred H-hhcC-CEEEEeCCCCCccCHHHHHHHHHHHh
Confidence 3 2333 3555676642 233445555444
No 339
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.33 E-value=0.015 Score=64.84 Aligned_cols=44 Identities=25% Similarity=0.304 Sum_probs=38.3
Q ss_pred CCCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcc
Q 036584 202 EENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
...++||++.++.+...+..+. -|.|.|++|+|||+||+.+...
T Consensus 19 ~~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hhhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHHH
Confidence 3578999999999988887754 6889999999999999999973
No 340
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.32 E-value=0.026 Score=61.64 Aligned_cols=77 Identities=18% Similarity=0.288 Sum_probs=47.1
Q ss_pred CCccccccCHHHHHHHHhcC------------CCCcEEEEEEecCCchHHHHHHHHHcccCccCCC---CEEEEEEe-CC
Q 036584 203 ENPVGFEDDTDLLLAKLLDK------------EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKF---DYCAWVSV-SQ 266 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~~-~~ 266 (919)
..++|.++.+..+.-.+... ....+-|.++|++|+|||++|+.++. .....| +...++.. ..
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~--~l~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPFIKVEATKFTEVGYV 89 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH--HhCCeEEEeecceeecCCcc
Confidence 45677777766665555431 11246789999999999999999998 344444 22222221 22
Q ss_pred CCCHHHHHHHHHHHh
Q 036584 267 DYKIKDLLLRIIKSF 281 (919)
Q Consensus 267 ~~~~~~~~~~il~~l 281 (919)
..+.+++++.+....
T Consensus 90 G~dvE~i~r~l~e~A 104 (441)
T TIGR00390 90 GRDVESMVRDLTDAA 104 (441)
T ss_pred cCCHHHHHHHHHHHH
Confidence 235666666665554
No 341
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.32 E-value=0.1 Score=53.46 Aligned_cols=49 Identities=20% Similarity=0.272 Sum_probs=32.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHH
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRI 277 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 277 (919)
...++.|.|.+|+||||+|.+++... .+.. ..+++++... +..++++.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 35699999999999999987776532 1222 3467776443 445666665
No 342
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.31 E-value=0.023 Score=53.31 Aligned_cols=42 Identities=33% Similarity=0.367 Sum_probs=30.5
Q ss_pred EEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHH
Q 036584 229 ISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLL 275 (919)
Q Consensus 229 v~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 275 (919)
|.|+|++|+|||+||+.++.- ... ...-+.+++..+..+++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~~---~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LGR---PVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HTC---EEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHH--hhc---ceEEEEecccccccccee
Confidence 689999999999999999983 322 244567777777766653
No 343
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.30 E-value=0.24 Score=54.64 Aligned_cols=88 Identities=23% Similarity=0.272 Sum_probs=49.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcccCcc--CCCCEEEEEEeCCCCCH--HHHHHHHHHHhcccccccccccCCHHHHHH
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHNNDVK--NKFDYCAWVSVSQDYKI--KDLLLRIIKSFNIMTALEDLETKTEEDLAR 300 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~--~~f~~~~wv~~~~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~~~~~~ 300 (919)
..++|.++|+.|+||||.+..++...... .+-..+..+++.. +.. ..-++...+.++.+. ....+.+.+..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt-~R~aa~eQL~~~a~~lgvpv----~~~~~~~~l~~ 247 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDN-YRIGAKKQIQTYGDIMGIPV----KAIESFKDLKE 247 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccC-ccHHHHHHHHHHhhcCCcce----EeeCcHHHHHH
Confidence 35799999999999999998888642221 1223455565543 222 223444444444321 11223445544
Q ss_pred HHHHHhccCceEEEEeccc
Q 036584 301 SLRKSLEAYSYLMVIDDIW 319 (919)
Q Consensus 301 ~l~~~l~~~~~LlVlDdv~ 319 (919)
.+.+. .+.-++++|.+.
T Consensus 248 ~L~~~--~~~DlVLIDTaG 264 (388)
T PRK12723 248 EITQS--KDFDLVLVDTIG 264 (388)
T ss_pred HHHHh--CCCCEEEEcCCC
Confidence 44443 345688889885
No 344
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.30 E-value=0.094 Score=58.76 Aligned_cols=57 Identities=23% Similarity=0.249 Sum_probs=34.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCC-CCHHHHHHHHHHHhcc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQD-YKIKDLLLRIIKSFNI 283 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~ 283 (919)
...+|.++|.+|+||||.|..++..... ..+ .+.-|++... ....+.++.+..+++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~-~g~-kV~lV~~D~~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKK-KGL-KVGLVAADTYRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHH-cCC-eEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 4679999999999999999999874222 222 3444444321 1223445555555543
No 345
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.26 E-value=0.078 Score=52.93 Aligned_cols=84 Identities=20% Similarity=0.123 Sum_probs=43.7
Q ss_pred EEEEEecCCchHHHHHHHHHcccCccCCCC---EEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHH
Q 036584 228 VISIYGMGGLGKTTLARKLYHNNDVKNKFD---YCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRK 304 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~---~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 304 (919)
||+|.|++|+||||+|+.+...... .... ....++...-.. ..-....-...............+.+.+.+.|..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~-~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK-RGIPAMEMDIILSLDDFYD-DYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT-CTTTCCCSEEEEEGGGGBH-HHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc-cCcCccceeEEEeeccccc-ccchhhHhhccccccCCCCccccCHHHHHHHHHH
Confidence 6999999999999999999873221 1222 233333332222 2111111111111111112345667777777776
Q ss_pred HhccCceEE
Q 036584 305 SLEAYSYLM 313 (919)
Q Consensus 305 ~l~~~~~Ll 313 (919)
..+++..-+
T Consensus 79 L~~g~~i~~ 87 (194)
T PF00485_consen 79 LKNGGSIEI 87 (194)
T ss_dssp HHTTSCEEE
T ss_pred HhCCCcccc
Confidence 656665433
No 346
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.25 E-value=0.14 Score=57.20 Aligned_cols=25 Identities=40% Similarity=0.413 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
...++.++|.+|+||||.|..++..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 3679999999999999998888763
No 347
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.15 Score=58.51 Aligned_cols=178 Identities=16% Similarity=0.158 Sum_probs=94.4
Q ss_pred CCCCCccccccCHHHH---HHHHhcCC-------CCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCC
Q 036584 200 AVEENPVGFEDDTDLL---LAKLLDKE-------QRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYK 269 (919)
Q Consensus 200 ~~~~~~vGr~~~~~~l---~~~L~~~~-------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 269 (919)
+.-.++.|.|+.++++ ++.|.++. .=.+-|.++|++|.|||.||+.++.+ ..-.| .+.|.+ +
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgE--A~VPF-----f~iSGS-~ 218 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AGVPF-----FSISGS-D 218 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcc--cCCCc-----eeccch-h
Confidence 3445778988777665 45555432 22567899999999999999999984 33333 112211 0
Q ss_pred HHHHHHHHHHHhcccccccccccCCHHHHHHHHHHHhccCceEEEEecccch------------hHH----HHHHhhCCC
Q 036584 270 IKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHK------------EDW----VSLKSAFPE 333 (919)
Q Consensus 270 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~------------~~~----~~l~~~l~~ 333 (919)
+-++. -........+...+..+..++.+++|.++.. +.+ .+++.....
T Consensus 219 ----FVemf------------VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDG 282 (596)
T COG0465 219 ----FVEMF------------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDG 282 (596)
T ss_pred ----hhhhh------------cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhcc
Confidence 00000 0111223334444555677899999988632 233 344444444
Q ss_pred CC--CCcEEEEEecchhhhhh--cC--CCCceEecCCCChHhHHHHHHHHhccCCCC-chhhHHHHHHHHHHcCCcchH
Q 036584 334 NK--IGSRVIITTRIKDVAER--SD--DRNYVHELRFLRQDESWQLFCERAFRNSKA-EKGLENLGREMVQKCDGLPLA 405 (919)
Q Consensus 334 ~~--~gs~iivTtr~~~v~~~--~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~~~~~~I~~~~~G~PLa 405 (919)
.+ .|-.|+-.|--++|... .. .....+.++.-+...-.++++-++-...-. .-++ ..|++.+-|.-.|
T Consensus 283 F~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl----~~iAr~tpGfsGA 357 (596)
T COG0465 283 FGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDL----KKIARGTPGFSGA 357 (596)
T ss_pred CCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCH----HHHhhhCCCcccc
Confidence 33 23333333433444322 11 122566677666677777777555433222 1122 2277777666544
No 348
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.23 E-value=0.034 Score=58.43 Aligned_cols=34 Identities=29% Similarity=0.442 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcc
Q 036584 213 DLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 213 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..+++.+... .+-|.++|++|+|||++++.....
T Consensus 23 ~~ll~~l~~~---~~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 23 SYLLDLLLSN---GRPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp HHHHHHHHHC---TEEEEEESSTTSSHHHHHHHHHHC
T ss_pred HHHHHHHHHc---CCcEEEECCCCCchhHHHHhhhcc
Confidence 3455555554 357799999999999999998863
No 349
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.21 Score=50.90 Aligned_cols=92 Identities=21% Similarity=0.231 Sum_probs=57.8
Q ss_pred CCccccccCHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHH
Q 036584 203 ENPVGFEDDTDLLLAKLLDK-----------EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIK 271 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 271 (919)
.++=|.+..+++|.+...-+ -...+-|.+||.+|.|||-||+.|+|. ....|- .
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANq--TSATFl-------------R 249 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQ--TSATFL-------------R 249 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcc--cchhhh-------------h
Confidence 35667788888887766432 124567889999999999999999993 333331 1
Q ss_pred HHHHHHHHHhcccccccccccCCHHHHHHHHHHHh-ccCceEEEEeccc
Q 036584 272 DLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSL-EAYSYLMVIDDIW 319 (919)
Q Consensus 272 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~ 319 (919)
-+-.+++....+ +-..+++.+.+.. ...+..+++|.++
T Consensus 250 vvGseLiQkylG----------dGpklvRqlF~vA~e~apSIvFiDEId 288 (440)
T KOG0726|consen 250 VVGSELIQKYLG----------DGPKLVRELFRVAEEHAPSIVFIDEID 288 (440)
T ss_pred hhhHHHHHHHhc----------cchHHHHHHHHHHHhcCCceEEeehhh
Confidence 111222222222 1135666666655 4567888889886
No 350
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.17 E-value=0.0028 Score=63.57 Aligned_cols=100 Identities=19% Similarity=0.243 Sum_probs=74.7
Q ss_pred cCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccChhhhcCCCCcEEecCCCCCcccccCc--c
Q 036584 609 RFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVELPI--E 686 (919)
Q Consensus 609 ~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~--~ 686 (919)
.+.+.+.|++.+ |. +. .+ .-..+++.|+.|.|+-|+|+.| ..+..|++|+.|+|+.| .+..+-. -
T Consensus 17 dl~~vkKLNcwg-~~-----L~---DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN--~I~sldEL~Y 83 (388)
T KOG2123|consen 17 DLENVKKLNCWG-CG-----LD---DI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN--CIESLDELEY 83 (388)
T ss_pred HHHHhhhhcccC-CC-----cc---HH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc--ccccHHHHHH
Confidence 355677788888 87 76 45 2345799999999999999999 46899999999999998 6766654 3
Q ss_pred cccccccccc---ccccccccC-------CCCcCcCccccccccc
Q 036584 687 INMMQELRHL---IGNFKGTLP-------IENLTNLQTLKYVQSK 721 (919)
Q Consensus 687 i~~L~~L~~L---~~~~~~~~~-------i~~l~~L~~L~~~~~~ 721 (919)
+.+|++|+.| .|...+..+ +.-|++|+.|+...+.
T Consensus 84 LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~Vt 128 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVT 128 (388)
T ss_pred HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccCcccc
Confidence 5677778877 333332222 6789999999877665
No 351
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.14 E-value=0.068 Score=59.37 Aligned_cols=91 Identities=14% Similarity=0.223 Sum_probs=52.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCC-HHHHHHHHHHHhccccccc---ccccCC-----HH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYK-IKDLLLRIIKSFNIMTALE---DLETKT-----EE 296 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~~~~~---~~~~~~-----~~ 296 (919)
...++|+|..|+|||||++.+++... -+.++++-+++... ..++..+.+..-......- ..+... ..
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHH
Confidence 56889999999999999999997422 24555666665543 3455544544322111000 111111 11
Q ss_pred HHHHHHHHHh--ccCceEEEEecccc
Q 036584 297 DLARSLRKSL--EAYSYLMVIDDIWH 320 (919)
Q Consensus 297 ~~~~~l~~~l--~~~~~LlVlDdv~~ 320 (919)
...-.+.+++ +++..|+++||+-.
T Consensus 234 ~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 234 YLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 2233344555 68999999999943
No 352
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.13 E-value=0.83 Score=48.61 Aligned_cols=151 Identities=9% Similarity=0.022 Sum_probs=86.6
Q ss_pred cEEEEEEecCCchHHHHHHHHHccc--------CccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNN--------DVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEED 297 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~--------~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~ 297 (919)
..+..++|..|.||+++|..+.+.. ....+-+...++..... ....++
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~------------------------~i~vd~ 73 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDK------------------------DLSKSE 73 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCC------------------------cCCHHH
Confidence 4577799999999999999987632 00111112222221111 111223
Q ss_pred HHHHHHHHh-----ccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecc-hhhhhhcCCCCceEecCCCChHh
Q 036584 298 LARSLRKSL-----EAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRI-KDVAERSDDRNYVHELRFLRQDE 369 (919)
Q Consensus 298 ~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~~~~~~~~~l~~L~~~~ 369 (919)
+...+...- .+.+-++|+|+++.. .....++..+..-+.++.+|++|.+ ..+...+......+++.+++.++
T Consensus 74 Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~ 153 (299)
T PRK07132 74 FLSAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQK 153 (299)
T ss_pred HHHHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHH
Confidence 322222210 146779999998754 3567788888776667777765543 34443333344789999999999
Q ss_pred HHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHH
Q 036584 370 SWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVV 408 (919)
Q Consensus 370 ~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~ 408 (919)
..+.+.... . + .+.+..++...+|.=-|+..
T Consensus 154 l~~~l~~~~----~-~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 154 ILAKLLSKN----K-E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred HHHHHHHcC----C-C---hhHHHHHHHHcCCHHHHHHH
Confidence 988776541 1 1 12355566666663234444
No 353
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.13 E-value=0.015 Score=53.57 Aligned_cols=21 Identities=48% Similarity=0.713 Sum_probs=19.4
Q ss_pred EEEEecCCchHHHHHHHHHcc
Q 036584 229 ISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 229 v~I~G~~GiGKTtLa~~v~~~ 249 (919)
|+|.|++|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999983
No 354
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=95.12 E-value=0.085 Score=53.99 Aligned_cols=76 Identities=20% Similarity=0.350 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhHhh-hcCCHHHHHHHHHHHHHhhhhhhhhhhhh
Q 036584 5 VVSYVVETLGDYLIQEVNFLQGVRDEVESLKKELEWMQSFIKDAEAK-QAGNNLIRRWVSDIRDIAYDAEDVLGKYM 80 (919)
Q Consensus 5 ~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~l~~a~~~-~~~~~~~~~wl~~lr~~~yd~eD~ld~~~ 80 (919)
-|..++.+|-.+.......+.-++.+++-++.+++.+|.||+..... +..-+....+..++-..||++|.++|-+.
T Consensus 297 yVdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi 373 (402)
T PF12061_consen 297 YVDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACI 373 (402)
T ss_pred HHHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhh
Confidence 45667777877777667778889999999999999999999987543 44445588999999999999999999875
No 355
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.10 E-value=0.15 Score=48.97 Aligned_cols=119 Identities=18% Similarity=0.074 Sum_probs=63.1
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEE---EEEeCCCCCHHHHHHHHHHHhccccccc--ccccCC------
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCA---WVSVSQDYKIKDLLLRIIKSFNIMTALE--DLETKT------ 294 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~---wv~~~~~~~~~~~~~~il~~l~~~~~~~--~~~~~~------ 294 (919)
...|-|++..|.||||.|.-.+- +...+=..++ |+.-.........+..+ .+....... .+...+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~--ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~ 80 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMAL--RALGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTA 80 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHH
Confidence 35788899999999999988776 3322222232 33333222333344332 121111000 000011
Q ss_pred -HHHHHHHHHHHhcc-CceEEEEecccch-----hHHHHHHhhCCCCCCCcEEEEEecchh
Q 036584 295 -EEDLARSLRKSLEA-YSYLMVIDDIWHK-----EDWVSLKSAFPENKIGSRVIITTRIKD 348 (919)
Q Consensus 295 -~~~~~~~l~~~l~~-~~~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~iivTtr~~~ 348 (919)
........++.+.. .-=|+|||.+... -+.+.+...+.....+..||+|.|+..
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 22233344445544 4459999998633 133455565655666788999999863
No 356
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.09 E-value=0.15 Score=49.62 Aligned_cols=120 Identities=14% Similarity=0.107 Sum_probs=59.4
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCC--CCHHHHHHHHHHHhccccccccccc-------CCHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQD--YKIKDLLLRIIKSFNIMTALEDLET-------KTEE 296 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~~~~~~~-------~~~~ 296 (919)
-.+++|+|+.|.|||||.+.++.- .....+.+++.-.+. ..... ....+......+..-. .+..
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~---~~~~~G~i~~~g~~~~~~~~~~----~~~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRL---YDPTSGEILIDGVDLRDLDLES----LRKNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC---CCCCCCEEEECCEEhhhcCHHH----HHhhEEEEcCCchhccchHHHHhhCHH
Confidence 458999999999999999999973 223334444322110 01111 1111111000000000 1111
Q ss_pred HHH-HHHHHHhccCceEEEEecccc---hhHHHHHHhhCCCCCCCcEEEEEecchhhhhh
Q 036584 297 DLA-RSLRKSLEAYSYLMVIDDIWH---KEDWVSLKSAFPENKIGSRVIITTRIKDVAER 352 (919)
Q Consensus 297 ~~~-~~l~~~l~~~~~LlVlDdv~~---~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~ 352 (919)
+.+ -.+...+-.++-++++|+-.. ......+...+.....+..||++|.+.+....
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 111 224455666788999998642 22223333322221124668888887766654
No 357
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.09 E-value=0.1 Score=60.16 Aligned_cols=103 Identities=19% Similarity=0.124 Sum_probs=62.0
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccccc-----
Q 036584 212 TDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTA----- 286 (919)
Q Consensus 212 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~----- 286 (919)
++.+.+.|..+=..-.++.|.|++|+|||||+.+++.. ...+-..+++++..+. ...+...+ +.++....
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~--~~~~ge~~~y~s~eEs--~~~i~~~~-~~lg~~~~~~~~~ 323 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLEN--ACANKERAILFAYEES--RAQLLRNA-YSWGIDFEEMEQQ 323 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeCC--HHHHHHHH-HHcCCChHHHhhC
Confidence 45566666665456789999999999999999999874 3233345777777654 34444443 34432110
Q ss_pred --cc----ccccCCHHHHHHHHHHHhc-cCceEEEEeccc
Q 036584 287 --LE----DLETKTEEDLARSLRKSLE-AYSYLMVIDDIW 319 (919)
Q Consensus 287 --~~----~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~ 319 (919)
.. .......+.....+.+.+. .+.-.+|+|.+.
T Consensus 324 g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 324 GLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred CcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 00 0112234556666666663 345577888773
No 358
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.07 Score=54.89 Aligned_cols=29 Identities=34% Similarity=0.455 Sum_probs=24.8
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCC
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKF 256 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f 256 (919)
...+.|||++|.|||-+|+.|+. ...-+|
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa--~mg~nf 194 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAA--TMGVNF 194 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHH--hcCCce
Confidence 56899999999999999999998 455554
No 359
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.06 E-value=0.14 Score=50.30 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
-.+++|+|+.|.|||||++.++.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999986
No 360
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.59 Score=53.73 Aligned_cols=174 Identities=20% Similarity=0.161 Sum_probs=94.4
Q ss_pred CccccccCHHHHHHHHhcCC-----------CCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHH
Q 036584 204 NPVGFEDDTDLLLAKLLDKE-----------QRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKD 272 (919)
Q Consensus 204 ~~vGr~~~~~~l~~~L~~~~-----------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 272 (919)
++-|..+.++.+.+.+.-+. ....-|.++|++|+|||-||..++.... .-+|++-.+ +
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~-------~~fisvKGP----E 736 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN-------LRFISVKGP----E 736 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC-------eeEEEecCH----H
Confidence 45566666666666665442 1234789999999999999999987422 335666543 3
Q ss_pred HHHHHHHHhcccccccccccCCHHHHHHHHHHHh-ccCceEEEEecccch-------------hHHHHHHhhCCC--CCC
Q 036584 273 LLLRIIKSFNIMTALEDLETKTEEDLARSLRKSL-EAYSYLMVIDDIWHK-------------EDWVSLKSAFPE--NKI 336 (919)
Q Consensus 273 ~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~-------------~~~~~l~~~l~~--~~~ 336 (919)
++...+ + .+ ++-++.+.... .-+++.+++|..++. ....+++..+.. +-.
T Consensus 737 lL~KyI----G---------aS-Eq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~ 802 (952)
T KOG0735|consen 737 LLSKYI----G---------AS-EQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLD 802 (952)
T ss_pred HHHHHh----c---------cc-HHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccc
Confidence 332222 1 11 33444454444 678999999998753 124556655553 234
Q ss_pred CcEEEE-Eecchhhhhhc-C-CCC-ceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchH
Q 036584 337 GSRVII-TTRIKDVAERS-D-DRN-YVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLA 405 (919)
Q Consensus 337 gs~iiv-Ttr~~~v~~~~-~-~~~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLa 405 (919)
|--|+- |||..-+-... . +.. +.+.-+.-+..+-.++|+..+-.-..+. .-..+.++.+++|.--|
T Consensus 803 GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~---~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 803 GVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDT---DVDLECLAQKTDGFTGA 872 (952)
T ss_pred eEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCcc---ccchHHHhhhcCCCchh
Confidence 665554 55643222111 1 111 2233344455666667765443211111 11234567777776644
No 361
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.03 E-value=0.12 Score=54.20 Aligned_cols=42 Identities=19% Similarity=0.275 Sum_probs=31.3
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCC
Q 036584 224 QRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQD 267 (919)
Q Consensus 224 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 267 (919)
....++.|.|++|+|||++|.+++... ...=..+++++..++
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~--a~~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQ--ASRGNPVLFVTVESP 75 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHH--HhCCCcEEEEEecCC
Confidence 346799999999999999999987632 122345788888653
No 362
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.02 E-value=0.14 Score=50.00 Aligned_cols=120 Identities=17% Similarity=0.179 Sum_probs=59.1
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCC--CCCHHHHHHHHHHHhccccccccccc-------CCHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQ--DYKIKDLLLRIIKSFNIMTALEDLET-------KTEE 296 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~il~~l~~~~~~~~~~~-------~~~~ 296 (919)
-.+++|+|+.|.|||||++.++.- .......+++.-.. ....... ...+......+..-. .+..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~---~~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~q~~~~~~~tv~~~lLS~G 100 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGL---LRPTSGRVRLDGADISQWDPNEL----GDHVGYLPQDDELFSGSIAENILSGG 100 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc---cCCCCCeEEECCEEcccCCHHHH----HhheEEECCCCccccCcHHHHCcCHH
Confidence 458999999999999999999963 22233334432111 0111111 111111000000000 1112
Q ss_pred H-HHHHHHHHhccCceEEEEecccc---hhHHHHHHhhCCC-CCCCcEEEEEecchhhhhh
Q 036584 297 D-LARSLRKSLEAYSYLMVIDDIWH---KEDWVSLKSAFPE-NKIGSRVIITTRIKDVAER 352 (919)
Q Consensus 297 ~-~~~~l~~~l~~~~~LlVlDdv~~---~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~~~ 352 (919)
+ ..-.+...+-.++-++++|+-.. ......+...+.. ...|..||++|.+.+....
T Consensus 101 ~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 161 (173)
T cd03246 101 QRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLAS 161 (173)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 2 12234455556677999998642 2222333333322 1236678888887766543
No 363
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.00 E-value=0.077 Score=53.38 Aligned_cols=89 Identities=16% Similarity=0.287 Sum_probs=51.2
Q ss_pred EEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhccccc--ccccccCCH-H-----H
Q 036584 227 LVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDY-KIKDLLLRIIKSFNIMTA--LEDLETKTE-E-----D 297 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~--~~~~~~~~~-~-----~ 297 (919)
+-++|.|.+|+|||+|+..+.+.. .-+.++++-+++.. ...++..++...-..... ......... . .
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 468899999999999999999853 23445888887653 344555555332111110 000011111 1 1
Q ss_pred HHHHHHHHh--ccCceEEEEeccc
Q 036584 298 LARSLRKSL--EAYSYLMVIDDIW 319 (919)
Q Consensus 298 ~~~~l~~~l--~~~~~LlVlDdv~ 319 (919)
..-.+.+++ +++..|+++||+-
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dslt 115 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETHH
T ss_pred cchhhhHHHhhcCCceeehhhhhH
Confidence 112223333 6899999999984
No 364
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.99 E-value=0.058 Score=61.11 Aligned_cols=54 Identities=22% Similarity=0.076 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCC
Q 036584 212 TDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQD 267 (919)
Q Consensus 212 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 267 (919)
+..+.+.|..+=....++.|.|.+|+|||||+.+++.... .+-..++|++..+.
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a--~~g~~vlYvs~Ees 119 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA--AAGGKVLYVSGEES 119 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcccc
Confidence 3455565655434467999999999999999999987422 22235788887654
No 365
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.99 E-value=0.15 Score=56.17 Aligned_cols=24 Identities=42% Similarity=0.419 Sum_probs=21.5
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..++.|+|++|+||||++.+++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999863
No 366
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.97 E-value=0.082 Score=62.87 Aligned_cols=100 Identities=22% Similarity=0.151 Sum_probs=62.9
Q ss_pred HHHHHHHh-cCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccccccc-cc
Q 036584 213 DLLLAKLL-DKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALE-DL 290 (919)
Q Consensus 213 ~~l~~~L~-~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~-~~ 290 (919)
..+..+|. .+=...+++-|+|++|+||||||.+++.. ....=..++|++..+.++.. .+++++.....- -.
T Consensus 46 ~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~ 118 (790)
T PRK09519 46 IALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVS 118 (790)
T ss_pred HHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEe
Confidence 45555565 34345679999999999999999887653 21222458999988877742 555555422100 11
Q ss_pred ccCCHHHHHHHHHHHh-ccCceEEEEeccc
Q 036584 291 ETKTEEDLARSLRKSL-EAYSYLMVIDDIW 319 (919)
Q Consensus 291 ~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~ 319 (919)
...+.++....+...+ .++.-|||+|.+-
T Consensus 119 ~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 119 QPDTGEQALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred cCCCHHHHHHHHHHHhhcCCCeEEEEcchh
Confidence 2234455555566655 3466799999975
No 367
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.95 E-value=0.037 Score=60.58 Aligned_cols=79 Identities=19% Similarity=0.304 Sum_probs=50.0
Q ss_pred CCCccccccCHHHHHHHHhcC------------CCCcEEEEEEecCCchHHHHHHHHHcccCccCCC---CEEEEEEe-C
Q 036584 202 EENPVGFEDDTDLLLAKLLDK------------EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKF---DYCAWVSV-S 265 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~~------------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~~-~ 265 (919)
...++|.++.+..+..++... +....-|.++|++|+|||+||+.+.. .....| +...|... -
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk--~l~~~fi~vD~t~f~e~Gy 91 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPFIKVEATKFTEVGY 91 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH--HhCChheeecchhhccCCc
Confidence 346788888887777777441 11136789999999999999999998 344443 32222221 1
Q ss_pred CCCCHHHHHHHHHHHhc
Q 036584 266 QDYKIKDLLLRIIKSFN 282 (919)
Q Consensus 266 ~~~~~~~~~~~il~~l~ 282 (919)
...+.+..++.+.....
T Consensus 92 vG~d~e~~ir~L~~~A~ 108 (443)
T PRK05201 92 VGRDVESIIRDLVEIAV 108 (443)
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 22355666666666553
No 368
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.94 E-value=0.18 Score=56.63 Aligned_cols=87 Identities=22% Similarity=0.207 Sum_probs=45.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCC-HHHHHHHHHHHhcccccccccccCCHHHHHHHHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYK-IKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRK 304 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 304 (919)
.+++.++|++|+||||++..++........-..+..|+...... ..+.++...+.++.+. ....+.+++...+.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~----~~~~~~~~l~~~l~~ 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV----EVVYDPKELAKALEQ 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCce----EccCCHHhHHHHHHH
Confidence 46999999999999998888876322012223466776543211 1122222233232211 112233444444443
Q ss_pred HhccCceEEEEecc
Q 036584 305 SLEAYSYLMVIDDI 318 (919)
Q Consensus 305 ~l~~~~~LlVlDdv 318 (919)
+. ..=+|++|..
T Consensus 297 -~~-~~DlVlIDt~ 308 (424)
T PRK05703 297 -LR-DCDVILIDTA 308 (424)
T ss_pred -hC-CCCEEEEeCC
Confidence 22 2457888976
No 369
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.91 E-value=0.22 Score=52.78 Aligned_cols=53 Identities=17% Similarity=0.165 Sum_probs=37.3
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSF 281 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 281 (919)
..++.|.|.+|+||||++.+++.... ..+=..++|++.... ..++...+...+
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~~--~~~~~~r~~~~~ 82 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEEP--VVRTARRLLGQY 82 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEcccC--HHHHHHHHHHHH
Confidence 45889999999999999999887421 221345889888763 455666655543
No 370
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=94.91 E-value=0.48 Score=56.94 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=38.0
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
+.++|....+.++.+.+..-......|.|+|..|+||+++|+.+.+.
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHh
Confidence 46889888888888877764333456889999999999999999874
No 371
>PRK06547 hypothetical protein; Provisional
Probab=94.90 E-value=0.034 Score=54.07 Aligned_cols=25 Identities=40% Similarity=0.444 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
...+|.|.|++|+||||+|+.+...
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4779999999999999999999874
No 372
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.87 E-value=0.015 Score=52.33 Aligned_cols=28 Identities=36% Similarity=0.548 Sum_probs=19.6
Q ss_pred EEEEecCCchHHHHHHHHHcccCccCCCCE
Q 036584 229 ISIYGMGGLGKTTLARKLYHNNDVKNKFDY 258 (919)
Q Consensus 229 v~I~G~~GiGKTtLa~~v~~~~~~~~~f~~ 258 (919)
|.|+|.+|+||||+|+.++. .....|..
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCceeE
Confidence 67999999999999999998 56667754
No 373
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.87 E-value=0.028 Score=57.86 Aligned_cols=27 Identities=44% Similarity=0.513 Sum_probs=23.7
Q ss_pred CCCcEEEEEEecCCchHHHHHHHHHcc
Q 036584 223 EQRRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 223 ~~~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..+..+|+|.|++|.|||||++.+..-
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345789999999999999999999873
No 374
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.86 E-value=0.093 Score=58.12 Aligned_cols=91 Identities=13% Similarity=0.221 Sum_probs=53.1
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCC-HHHHHHHHHHHhccccccc---ccccCC-----HH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYK-IKDLLLRIIKSFNIMTALE---DLETKT-----EE 296 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~~~~~---~~~~~~-----~~ 296 (919)
...++|+|..|+|||||++.+++. . ..+.++.+-+++... ..+++..++..-....... ..+... ..
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~--~--~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRG--T--TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccC--C--CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 457999999999999999999863 1 224666676766544 3445555544321111000 011111 11
Q ss_pred HHHHHHHHHh--ccCceEEEEecccc
Q 036584 297 DLARSLRKSL--EAYSYLMVIDDIWH 320 (919)
Q Consensus 297 ~~~~~l~~~l--~~~~~LlVlDdv~~ 320 (919)
...-.+.+++ ++++.|+++||+-.
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 1222344444 68999999999843
No 375
>PTZ00301 uridine kinase; Provisional
Probab=94.85 E-value=0.025 Score=56.83 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
..+|+|.|.+|.||||||+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 57999999999999999998876
No 376
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.83 E-value=0.05 Score=50.55 Aligned_cols=43 Identities=35% Similarity=0.488 Sum_probs=31.9
Q ss_pred EEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcc
Q 036584 228 VISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNI 283 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 283 (919)
+|.|.|++|+||||+|+.++++ ..-. .|+ ...++++|++..+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~--~gl~-----~vs------aG~iFR~~A~e~gm 44 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEH--LGLK-----LVS------AGTIFREMARERGM 44 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHH--hCCc-----eee------ccHHHHHHHHHcCC
Confidence 6899999999999999999984 2222 122 34678888887654
No 377
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=0.077 Score=53.03 Aligned_cols=91 Identities=18% Similarity=0.220 Sum_probs=55.3
Q ss_pred CccccccCHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHH
Q 036584 204 NPVGFEDDTDLLLAKLLDK-----------EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKD 272 (919)
Q Consensus 204 ~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 272 (919)
++-|=.+.++++.+...-+ =+..+-|.++|++|.|||-+|+.|+| +....| +-|-.
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacf-----irvig------ 244 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACF-----IRVIG------ 244 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceE-----Eeehh------
Confidence 4556667777776655432 12466789999999999999999999 555444 22211
Q ss_pred HHHHHHHHhcccccccccccCCHHHHHHHHHHHhccC-ceEEEEeccc
Q 036584 273 LLLRIIKSFNIMTALEDLETKTEEDLARSLRKSLEAY-SYLMVIDDIW 319 (919)
Q Consensus 273 ~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~LlVlDdv~ 319 (919)
.++.+..-+ .-...++.|.+..+.| -++|++|.++
T Consensus 245 --selvqkyvg----------egarmvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 245 --SELVQKYVG----------EGARMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred --HHHHHHHhh----------hhHHHHHHHHHHhcccceEEEEeeccc
Confidence 111111111 0134556666666554 5788889875
No 378
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.81 E-value=0.1 Score=54.47 Aligned_cols=22 Identities=32% Similarity=0.684 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHHcc
Q 036584 228 VISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
.|.+.|++|+||||+|+.+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999999873
No 379
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.81 E-value=0.02 Score=46.09 Aligned_cols=22 Identities=45% Similarity=0.684 Sum_probs=19.9
Q ss_pred EEEEEecCCchHHHHHHHHHcc
Q 036584 228 VISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
+|.|.|.+|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999974
No 380
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.81 E-value=0.06 Score=53.34 Aligned_cols=96 Identities=21% Similarity=0.219 Sum_probs=50.6
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKS 305 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 305 (919)
...+.|+|+.|.||||+++.+..- .... ..++-+......... ... ....................+.+...
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~--i~~~-~~~i~ied~~E~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF--IPPD-ERIITIEDTAELQLP--HPN---WVRLVTRPGNVEGSGEVTMADLLRSA 96 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh--cCCC-CCEEEECCccccCCC--CCC---EEEEEEecCCCCCCCccCHHHHHHHH
Confidence 458999999999999999998863 2222 222222111110000 000 00000000000011122345556667
Q ss_pred hccCceEEEEecccchhHHHHHHh
Q 036584 306 LEAYSYLMVIDDIWHKEDWVSLKS 329 (919)
Q Consensus 306 l~~~~~LlVlDdv~~~~~~~~l~~ 329 (919)
++..+=.++++.+.+.+.|+.+..
T Consensus 97 lR~~pd~i~igEir~~ea~~~~~a 120 (186)
T cd01130 97 LRMRPDRIIVGEVRGGEALDLLQA 120 (186)
T ss_pred hccCCCEEEEEccCcHHHHHHHHH
Confidence 777788999999998887765543
No 381
>PRK08149 ATP synthase SpaL; Validated
Probab=94.81 E-value=0.1 Score=57.95 Aligned_cols=91 Identities=13% Similarity=0.211 Sum_probs=51.8
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCC-CCHHHHHHHHHHHhcccc--------cccccccCCHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQD-YKIKDLLLRIIKSFNIMT--------ALEDLETKTEE 296 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~--------~~~~~~~~~~~ 296 (919)
-..++|+|..|+|||||+..+++... -+.++...+... .+..++..+.+....... +.+........
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 45889999999999999999987321 233344444433 344555555555322110 10010111112
Q ss_pred HHHHHHHHHh--ccCceEEEEecccc
Q 036584 297 DLARSLRKSL--EAYSYLMVIDDIWH 320 (919)
Q Consensus 297 ~~~~~l~~~l--~~~~~LlVlDdv~~ 320 (919)
.....+.+++ ++++.||++||+-.
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccchHH
Confidence 2333344444 68999999999843
No 382
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=0.15 Score=54.15 Aligned_cols=93 Identities=20% Similarity=0.246 Sum_probs=57.6
Q ss_pred CCccccccCHHHHHHHHhcC----------CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHH
Q 036584 203 ENPVGFEDDTDLLLAKLLDK----------EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKD 272 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 272 (919)
+++.|.++.++-|.+...-+ ....+-|.++|++|.|||-||+.|+.+ -. .-|.+||...
T Consensus 212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATE--c~-----tTFFNVSsst---- 280 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATE--CG-----TTFFNVSSST---- 280 (491)
T ss_pred HhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHh--hc-----CeEEEechhh----
Confidence 56778877777776665432 234678999999999999999999984 22 3344555320
Q ss_pred HHHHHHHHhcccccccccccCCHHHHHHHHHHHh-ccCceEEEEecccc
Q 036584 273 LLLRIIKSFNIMTALEDLETKTEEDLARSLRKSL-EAYSYLMVIDDIWH 320 (919)
Q Consensus 273 ~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~ 320 (919)
+..... . +.+.+++.|.+.- ...+..|+||.++.
T Consensus 281 ----ltSKwR---------G-eSEKlvRlLFemARfyAPStIFiDEIDs 315 (491)
T KOG0738|consen 281 ----LTSKWR---------G-ESEKLVRLLFEMARFYAPSTIFIDEIDS 315 (491)
T ss_pred ----hhhhhc---------c-chHHHHHHHHHHHHHhCCceeehhhHHH
Confidence 111111 1 2245556666544 24567888888764
No 383
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=94.80 E-value=0.15 Score=48.59 Aligned_cols=28 Identities=32% Similarity=0.540 Sum_probs=23.3
Q ss_pred EEEEEEecCCchHHHHHHHHHcccCccCCC
Q 036584 227 LVISIYGMGGLGKTTLARKLYHNNDVKNKF 256 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f 256 (919)
+-|.++||.|+||||+.+.+++ ...-+|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk--~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAK--ALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHH--HcCCCc
Confidence 3578999999999999999998 555555
No 384
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.78 E-value=0.21 Score=51.61 Aligned_cols=119 Identities=18% Similarity=0.198 Sum_probs=77.6
Q ss_pred CCCCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 036584 201 VEENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKS 280 (919)
Q Consensus 201 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 280 (919)
..+.|+|-.. ..+++.++.......+.+.|+|+.|+|||+-++.+++. ....+-+..++.++...++..+...
T Consensus 70 ~~~~~l~tkt-~r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~ 142 (297)
T COG2842 70 LAPDFLETKT-VRRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAA 142 (297)
T ss_pred ccccccccch-hHhHhhhhhhhhhcCceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHH
Confidence 3445665432 23444555443333458999999999999999999983 2224445677777877777777776
Q ss_pred hcccccccccccCCHHHHHHHHHHHhccCceEEEEecccch--hHHHHHHhhCC
Q 036584 281 FNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHK--EDWVSLKSAFP 332 (919)
Q Consensus 281 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~ 332 (919)
...... .........+...+++..-+++.|+.... ..++.+.....
T Consensus 143 ~~~~~~------~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d 190 (297)
T COG2842 143 AFGATD------GTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHD 190 (297)
T ss_pred Hhcccc------hhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHH
Confidence 665332 33455666667777888889999998754 45555554433
No 385
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.77 E-value=0.041 Score=55.79 Aligned_cols=65 Identities=29% Similarity=0.254 Sum_probs=39.5
Q ss_pred CHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHH
Q 036584 211 DTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLL 275 (919)
Q Consensus 211 ~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 275 (919)
+...+++.+.....+..+|+|.|+||+|||||...+....+.+++=-.++-|+=|++++--.++-
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLG 78 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLG 78 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS-
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccc
Confidence 34566666666555678999999999999999999887544444433455555566666444443
No 386
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.77 E-value=0.099 Score=59.29 Aligned_cols=55 Identities=22% Similarity=0.071 Sum_probs=38.6
Q ss_pred CHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCC
Q 036584 211 DTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQD 267 (919)
Q Consensus 211 ~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 267 (919)
-+..+.+.|..+=....++.|.|.+|+|||||+.+++... ...-..++|++..+.
T Consensus 79 Gi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~--a~~g~kvlYvs~EEs 133 (454)
T TIGR00416 79 GFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQL--AKNQMKVLYVSGEES 133 (454)
T ss_pred CcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHH--HhcCCcEEEEECcCC
Confidence 3456666665554456799999999999999999997642 222235788877644
No 387
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.75 E-value=0.031 Score=51.24 Aligned_cols=24 Identities=38% Similarity=0.450 Sum_probs=22.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..+|.+.|.-|+||||+++.+++.
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 459999999999999999999985
No 388
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.74 E-value=0.11 Score=50.63 Aligned_cols=120 Identities=17% Similarity=0.056 Sum_probs=63.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCC---CCCHHHHHHHHHHHhccccccc--cccc-------C
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQ---DYKIKDLLLRIIKSFNIMTALE--DLET-------K 293 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~il~~l~~~~~~~--~~~~-------~ 293 (919)
...|.|+|..|-||||.|.-..- +..++=..+..+-.-. .......+..+ ..+....... .+.. .
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l-~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFG-GGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcC-CCcEEEECCCCCcccCCCcHHHHH
Confidence 45889999999999999988776 3332222233333222 22333333331 1111100000 0000 1
Q ss_pred CHHHHHHHHHHHhc-cCceEEEEecccch-----hHHHHHHhhCCCCCCCcEEEEEecchh
Q 036584 294 TEEDLARSLRKSLE-AYSYLMVIDDIWHK-----EDWVSLKSAFPENKIGSRVIITTRIKD 348 (919)
Q Consensus 294 ~~~~~~~~l~~~l~-~~~~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~iivTtr~~~ 348 (919)
......+..++.+. ++-=|+|||.+... -+.+++...+.....+..||+|-|+..
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 11223344445554 44459999998643 234566666666666788999999763
No 389
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.74 E-value=0.034 Score=58.52 Aligned_cols=47 Identities=26% Similarity=0.233 Sum_probs=37.9
Q ss_pred HhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCC
Q 036584 219 LLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQD 267 (919)
Q Consensus 219 L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 267 (919)
+..+=+..+++.|+|.+|+|||++|.++.. ........++||+..+.
T Consensus 16 l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 16 LGGGLPRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES 62 (260)
T ss_pred hcCCCcCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC
Confidence 334334578999999999999999999998 45555788999998865
No 390
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.72 E-value=0.13 Score=49.37 Aligned_cols=24 Identities=38% Similarity=0.674 Sum_probs=22.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
...+.|.|++|+|||||+++++.+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999985
No 391
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.71 E-value=0.16 Score=50.13 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..+++|+|..|.|||||++.++.-
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999963
No 392
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=94.70 E-value=0.55 Score=54.26 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=38.4
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..++|....+..+.+.+..-......|.|.|.+|+|||++|+.+.+.
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 46899988888888777654444567899999999999999999874
No 393
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.70 E-value=0.078 Score=59.44 Aligned_cols=93 Identities=19% Similarity=0.235 Sum_probs=56.4
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCC-HHHHHHHHHHHhcccccc--c-ccccC-----CHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYK-IKDLLLRIIKSFNIMTAL--E-DLETK-----TEE 296 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~~~~--~-~~~~~-----~~~ 296 (919)
-+-++|.|.+|+|||||+.++.+... +.+-+.++++-+++... ..+++..+...-...... . ..+.. ...
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 45789999999999999999887432 23557888887776543 445555554432111100 0 11111 112
Q ss_pred HHHHHHHHHh--c-cCceEEEEeccc
Q 036584 297 DLARSLRKSL--E-AYSYLMVIDDIW 319 (919)
Q Consensus 297 ~~~~~l~~~l--~-~~~~LlVlDdv~ 319 (919)
.....+.+++ + +++.|+++||+-
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccch
Confidence 2344455666 3 789999999994
No 394
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=94.70 E-value=0.41 Score=55.30 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=39.3
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..++|....++.+.+.+..-......|.|.|..|+||+++|+.+++.
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHh
Confidence 35899999999998888654434568899999999999999999974
No 395
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.69 E-value=0.43 Score=46.94 Aligned_cols=35 Identities=31% Similarity=0.276 Sum_probs=26.9
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEE
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVS 263 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 263 (919)
..||+|.|++|.|||||.+.+.. ....=.+.+|+.
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~---LE~~~~G~I~i~ 62 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNG---LEEPDSGSITVD 62 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC---CcCCCCceEEEC
Confidence 45999999999999999999975 444444566664
No 396
>PRK09099 type III secretion system ATPase; Provisional
Probab=94.67 E-value=0.11 Score=58.10 Aligned_cols=92 Identities=11% Similarity=0.182 Sum_probs=51.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccc--c-ccccC-----CHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTAL--E-DLETK-----TEED 297 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~--~-~~~~~-----~~~~ 297 (919)
-..++|.|..|+|||||++.++..... -.++++..-.......++...+...-...... . ..+.. ....
T Consensus 163 Gq~~~I~G~sG~GKTtLl~~ia~~~~~---d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~ 239 (441)
T PRK09099 163 GQRMGIFAPAGVGKSTLMGMFARGTQC---DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAY 239 (441)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC---CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHH
Confidence 568999999999999999999874222 12344444344444555555554332111100 0 01111 1112
Q ss_pred HHHHHHHHh--ccCceEEEEecccc
Q 036584 298 LARSLRKSL--EAYSYLMVIDDIWH 320 (919)
Q Consensus 298 ~~~~l~~~l--~~~~~LlVlDdv~~ 320 (919)
..-.+.+++ +++..|+++||+-.
T Consensus 240 ~a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 240 VATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhH
Confidence 233344555 58899999999843
No 397
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.65 E-value=0.055 Score=59.25 Aligned_cols=112 Identities=17% Similarity=0.155 Sum_probs=63.1
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKS 305 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 305 (919)
...|.|.|+.|.||||+++.+.+. +..+....++. +.++... .... ...+.... +. ..........++..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~t-iEdp~E~--~~~~-~~~~i~q~---ev-g~~~~~~~~~l~~~ 191 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDY--INKNAAGHIIT-IEDPIEY--VHRN-KRSLINQR---EV-GLDTLSFANALRAA 191 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEE-EcCChhh--hccC-ccceEEcc---cc-CCCCcCHHHHHHHh
Confidence 468999999999999999998873 33334344443 2222111 0000 00000000 00 11112355667778
Q ss_pred hccCceEEEEecccchhHHHHHHhhCCCCCCCcEEEEEecchhhh
Q 036584 306 LEAYSYLMVIDDIWHKEDWVSLKSAFPENKIGSRVIITTRIKDVA 350 (919)
Q Consensus 306 l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 350 (919)
|+..+=.|++|.+.+.+.+...... ...|..|+.|....+..
T Consensus 192 lr~~pd~i~vgEird~~~~~~~l~a---a~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 192 LREDPDVILIGEMRDLETVELALTA---AETGHLVFGTLHTNSAA 233 (343)
T ss_pred hccCCCEEEEeCCCCHHHHHHHHHH---HHcCCcEEEEEcCCCHH
Confidence 8888999999999988876654332 22355566666544443
No 398
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.64 E-value=0.041 Score=57.62 Aligned_cols=56 Identities=23% Similarity=0.290 Sum_probs=42.7
Q ss_pred CCCCccccccCHH---HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCC
Q 036584 201 VEENPVGFEDDTD---LLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKF 256 (919)
Q Consensus 201 ~~~~~vGr~~~~~---~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f 256 (919)
..+.+||..+..+ -+++++.++.-.-+.|.|+|++|.|||+||-.+.+..-..-+|
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF 95 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPF 95 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCc
Confidence 3457888765554 3677777776667899999999999999999999854444455
No 399
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.62 E-value=0.093 Score=58.30 Aligned_cols=92 Identities=13% Similarity=0.174 Sum_probs=50.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccccccc---ccccCCH-----HH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALE---DLETKTE-----ED 297 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~---~~~~~~~-----~~ 297 (919)
-..++|.|..|+|||||++.+.... .....++...-.......++..+.+..-......- ..+.... ..
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~---~~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNT---DADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCC---CCCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 4589999999999999999998732 22223333322333344555555444322111000 1111111 11
Q ss_pred HHHHHHHHh--ccCceEEEEecccc
Q 036584 298 LARSLRKSL--EAYSYLMVIDDIWH 320 (919)
Q Consensus 298 ~~~~l~~~l--~~~~~LlVlDdv~~ 320 (919)
....+.+++ +++..|+++||+-.
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhH
Confidence 223344555 68899999999843
No 400
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.60 E-value=0.028 Score=57.00 Aligned_cols=25 Identities=40% Similarity=0.703 Sum_probs=22.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
+..+|+|.|.+|+||||||+.++..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999984
No 401
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.60 E-value=0.0048 Score=71.68 Aligned_cols=242 Identities=22% Similarity=0.224 Sum_probs=117.3
Q ss_pred hhhccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCC--Ccccc----ChhhhcCCCCcEEecCCCCC
Q 036584 605 LLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNS--NIGIL----PSSIVKLQRLQTLDFSGDVG 678 (919)
Q Consensus 605 ~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~--~i~~L----P~~l~~L~~L~~L~L~~~~~ 678 (919)
.....++.|+.|.+.. +.. +... .+-.....+++|+.|+++++ .+... +.....+++|+.|+++++ .
T Consensus 182 ~l~~~~~~L~~l~l~~-~~~----~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~-~ 254 (482)
T KOG1947|consen 182 RLLSSCPLLKRLSLSG-CSK----ITDD-SLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGC-G 254 (482)
T ss_pred HHHhhCchhhHhhhcc-ccc----CChh-hHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhh-h
Confidence 3445578888888887 431 4310 13334566788888888763 11111 223445677778887777 1
Q ss_pred cccccCccccccccccccccccccccCCCCcCcCccccccccc----ccchhhccCCCCCCeEEeeecCccccccccchh
Q 036584 679 CPVELPIEINMMQELRHLIGNFKGTLPIENLTNLQTLKYVQSK----SWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSF 754 (919)
Q Consensus 679 ~~~~lp~~i~~L~~L~~L~~~~~~~~~i~~l~~L~~L~~~~~~----~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~ 754 (919)
.+... ++. .+ ...+++|++|.+..+. .........+++|++|+++.+... ..... .
T Consensus 255 ~isd~--~l~------~l---------~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~-~d~~l-~- 314 (482)
T KOG1947|consen 255 LVTDI--GLS------AL---------ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL-TDSGL-E- 314 (482)
T ss_pred ccCch--hHH------HH---------HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc-hHHHH-H-
Confidence 11110 000 00 0114455555422222 112223345666777777766532 11111 1
Q ss_pred hHHhhcCCCcEEEEeecCCCCccCcCCCCCCCCceeEEEceecC----CCCcchhccCCCcceEEEEccCCCCCC-chhh
Q 036584 755 ESIAKLKNLRFLSVKLLDANSFASLQPLSHCQCLVDLRLSGRMK----KLPEDMHVFLPNLECLSLSVPYPKEDP-MPAL 829 (919)
Q Consensus 755 ~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~----~~p~~~~~l~~~L~~L~L~~~~l~~~~-~~~l 829 (919)
.....+++|+.|.+.... .++.++.+.+.+... .........+++|+.+.|..+...... ...+
T Consensus 315 ~~~~~c~~l~~l~~~~~~-----------~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l 383 (482)
T KOG1947|consen 315 ALLKNCPNLRELKLLSLN-----------GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSL 383 (482)
T ss_pred HHHHhCcchhhhhhhhcC-----------CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHh
Confidence 224445666655542111 144555555544321 111122222588888888887743333 2455
Q ss_pred hcCCCCCeEEEeeccccCeeEEEcCCCCcccceeEEe-cCCcccEEEcc--CCcccccceEEccccCccC
Q 036584 830 EMLPNLIILDLHFRCHYVKKLGCRAEGFPLLEILQLD-ADGLVEWQVEE--GAMPVLRGLKIAAEIPKLK 896 (919)
Q Consensus 830 ~~lp~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~l~-~~~l~~~~~~~--~~~p~L~~L~l~~nC~~l~ 896 (919)
..+|+|. ..+.. ....+..++.|.+. +...+.-.... ..+.+++.+.+.+ |+.+.
T Consensus 384 ~gc~~l~-~~l~~----------~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~-~~~~~ 441 (482)
T KOG1947|consen 384 RGCPNLT-ESLEL----------RLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSG-CRVIT 441 (482)
T ss_pred cCCcccc-hHHHH----------HhccCCccceEecccCccccccchHHHhhhhhccccCCccC-ccccc
Confidence 5667663 22220 01122337777777 44444222111 1166778888887 77766
No 402
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.60 E-value=0.12 Score=49.46 Aligned_cols=117 Identities=19% Similarity=0.184 Sum_probs=61.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHH-HHHHHHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEE-DLARSLRK 304 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~-~~~~~l~~ 304 (919)
-.+++|+|..|.|||||++.+... . ......+++........ ........+.... . .+.. ...-.+..
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~--~-~~~~G~i~~~~~~~~~~--~~~~~~~~i~~~~---q---lS~G~~~r~~l~~ 93 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGL--L-KPTSGEILIDGKDIAKL--PLEELRRRIGYVP---Q---LSGGQRQRVALAR 93 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--C-CCCccEEEECCEEcccC--CHHHHHhceEEEe---e---CCHHHHHHHHHHH
Confidence 368999999999999999999873 2 23455555533211110 0011111111100 0 1111 22223455
Q ss_pred HhccCceEEEEeccc---chhHHHHHHhhCCCC-CCCcEEEEEecchhhhhhc
Q 036584 305 SLEAYSYLMVIDDIW---HKEDWVSLKSAFPEN-KIGSRVIITTRIKDVAERS 353 (919)
Q Consensus 305 ~l~~~~~LlVlDdv~---~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~~~ 353 (919)
.+...+-++++|+.- +......+...+... ..+..+|++|.+.+.....
T Consensus 94 ~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 94 ALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 555567899999975 233333333333211 1246688888777666554
No 403
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.59 E-value=0.019 Score=50.96 Aligned_cols=21 Identities=52% Similarity=0.844 Sum_probs=18.8
Q ss_pred EEEEecCCchHHHHHHHHHcc
Q 036584 229 ISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 229 v~I~G~~GiGKTtLa~~v~~~ 249 (919)
|.|+|++|+|||+||+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 569999999999999998874
No 404
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.59 E-value=0.028 Score=54.56 Aligned_cols=40 Identities=23% Similarity=0.203 Sum_probs=31.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCcc-CCCCEEEEEEeCCC
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVK-NKFDYCAWVSVSQD 267 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~ 267 (919)
..++.+.|+.|+|||.||+.++. .+. +.....+-+++++-
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEY 43 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGH
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcc
Confidence 46889999999999999999998 444 45556666666643
No 405
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.58 E-value=0.028 Score=56.84 Aligned_cols=25 Identities=48% Similarity=0.781 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
...+|+|+|++|+||||||+.++..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999873
No 406
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.57 E-value=0.17 Score=50.53 Aligned_cols=22 Identities=32% Similarity=0.212 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036584 227 LVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
++++|.|+.|.|||||.+.+.-
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999998874
No 407
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.55 E-value=0.32 Score=49.64 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
-.+++|+|+.|.|||||++.++.-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999863
No 408
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.55 E-value=0.17 Score=54.25 Aligned_cols=91 Identities=11% Similarity=0.226 Sum_probs=50.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCC-CCCHHHHHHHHHHHhcccccc--c-ccccC-----CHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQ-DYKIKDLLLRIIKSFNIMTAL--E-DLETK-----TEE 296 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~--~-~~~~~-----~~~ 296 (919)
...++|+|..|+|||||++.+.+... . +..+..-+.+ ..+..++....+..-...... . ..+.. ...
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~---~-~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT---A-DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC---C-CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 45789999999999999999997322 1 2333444443 334555555554432211100 0 11111 111
Q ss_pred HHHHHHHHHh--ccCceEEEEecccc
Q 036584 297 DLARSLRKSL--EAYSYLMVIDDIWH 320 (919)
Q Consensus 297 ~~~~~l~~~l--~~~~~LlVlDdv~~ 320 (919)
...-.+.+++ +++..|+++||+-.
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccchH
Confidence 2223334444 68999999999843
No 409
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.53 E-value=0.21 Score=53.84 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=19.0
Q ss_pred EEEEecCCchHHHHHHHHHcc
Q 036584 229 ISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 229 v~I~G~~GiGKTtLa~~v~~~ 249 (919)
+++.|++|.||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999874
No 410
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.52 E-value=0.059 Score=52.16 Aligned_cols=45 Identities=27% Similarity=0.285 Sum_probs=33.8
Q ss_pred ccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcc
Q 036584 205 PVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 205 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
+||.+..+.++++.+..-......|.|+|..|+||+.+|+.+.+.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 467778888888877764333467789999999999999999983
No 411
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=94.47 E-value=0.049 Score=54.66 Aligned_cols=106 Identities=18% Similarity=0.169 Sum_probs=51.2
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHH
Q 036584 224 QRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLR 303 (919)
Q Consensus 224 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 303 (919)
.+..++.|.|.+|.||||++..+..... ....+.++...-.....-...+... .... ...........+...+.
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~----~~~~v~i~~D~~r~~~p~~~~~~~~-~~~~-~~~~~~~~a~~~~~~~~ 86 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFG----GGGIVVIDADEFRQFHPDYDELLKA-DPDE-ASELTQKEASRLAEKLI 86 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-----TT-SEEE-GGGGGGGSTTHHHHHHH-HCCC-THHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhcc----CCCeEEEehHHHHHhccchhhhhhh-hhhh-hHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999987321 3445566543211111111122221 1100 00111222344566666
Q ss_pred HHhccCceEEEEecccch-hHHHHHHhhCCCCC
Q 036584 304 KSLEAYSYLMVIDDIWHK-EDWVSLKSAFPENK 335 (919)
Q Consensus 304 ~~l~~~~~LlVlDdv~~~-~~~~~l~~~l~~~~ 335 (919)
+..-.+++=+|+|..-.. +....+...+...+
T Consensus 87 ~~a~~~~~nii~E~tl~~~~~~~~~~~~~k~~G 119 (199)
T PF06414_consen 87 EYAIENRYNIIFEGTLSNPSKLRKLIREAKAAG 119 (199)
T ss_dssp HHHHHCT--EEEE--TTSSHHHHHHHHHHHCTT
T ss_pred HHHHHcCCCEEEecCCCChhHHHHHHHHHHcCC
Confidence 666677888888987644 33333555554433
No 412
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.46 E-value=0.05 Score=55.93 Aligned_cols=65 Identities=25% Similarity=0.186 Sum_probs=48.1
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHH
Q 036584 213 DLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRI 277 (919)
Q Consensus 213 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 277 (919)
.+++..+.....+..+|+|.|.||+|||||.-.+....+.+++--.++-|+-|++++--.++-+=
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDR 102 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDR 102 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccH
Confidence 56777777766678899999999999999999888755445554456666777777765555443
No 413
>PRK06762 hypothetical protein; Provisional
Probab=94.44 E-value=0.03 Score=54.35 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=21.5
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..+|.|.|++|+||||+|+.+.+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999873
No 414
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.44 E-value=0.35 Score=51.95 Aligned_cols=48 Identities=17% Similarity=0.072 Sum_probs=34.4
Q ss_pred eEecCCCChHhHHHHHHHHhccCCCCc-hhhHHHHHHHHHHcCCcchHH
Q 036584 359 VHELRFLRQDESWQLFCERAFRNSKAE-KGLENLGREMVQKCDGLPLAI 406 (919)
Q Consensus 359 ~~~l~~L~~~~~~~lf~~~~~~~~~~~-~~~~~~~~~I~~~~~G~PLal 406 (919)
++++++++.+|+..++....-..-... ...+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999988764433222 333455667777779998643
No 415
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=94.43 E-value=0.52 Score=47.07 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=18.8
Q ss_pred EEEEEecCCchHHHHHHHHH
Q 036584 228 VISIYGMGGLGKTTLARKLY 247 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~ 247 (919)
+++|+|+.|.|||||++.++
T Consensus 24 ~~~i~G~nGsGKStll~al~ 43 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 88999999999999999886
No 416
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.43 E-value=0.43 Score=51.78 Aligned_cols=90 Identities=14% Similarity=0.165 Sum_probs=53.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhcccccccccccCCHHHHHHHHH
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDY-KIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLR 303 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 303 (919)
+.+++.|+|+.|+||||++..++... ...-..+.+|+..... ...+-++...+.++... ....+..++...+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l--~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv----~~~~dp~dL~~al~ 278 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL--LKQNRTVGFITTDTFRSGAVEQFQGYADKLDVEL----IVATSPAELEEAVQ 278 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCE----EecCCHHHHHHHHH
Confidence 46799999999999999999988642 2222346677665332 22344555555444321 12234555555554
Q ss_pred HHhc-cCceEEEEecccc
Q 036584 304 KSLE-AYSYLMVIDDIWH 320 (919)
Q Consensus 304 ~~l~-~~~~LlVlDdv~~ 320 (919)
..-. +..=+|++|-.-.
T Consensus 279 ~l~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 279 YMTYVNCVDHILIDTVGR 296 (407)
T ss_pred HHHhcCCCCEEEEECCCC
Confidence 3321 3446888898753
No 417
>CHL00206 ycf2 Ycf2; Provisional
Probab=94.41 E-value=0.37 Score=61.89 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..+-|.++|++|+|||.||++++.+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~e 1653 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATN 1653 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHh
Confidence 3568899999999999999999985
No 418
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.41 E-value=0.12 Score=54.12 Aligned_cols=90 Identities=16% Similarity=0.194 Sum_probs=48.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccccc-cc--ccccCCHHHHHHH
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTA-LE--DLETKTEEDLARS 301 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-~~--~~~~~~~~~~~~~ 301 (919)
+..+|.|.|.+|.|||||+..+.+ ........ +.+. ....+..+ .+.+...+.+.. .. ..-..+...+...
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~--~l~~~~~~-~VI~-gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~~A 176 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLM--RLKDSVPC-AVIE-GDQQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIADA 176 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HhccCCCE-EEEC-CCcCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHHHH
Confidence 488999999999999999999998 34333332 2222 21122221 112333322110 00 1112334445555
Q ss_pred HHHHhccCceEEEEecccc
Q 036584 302 LRKSLEAYSYLMVIDDIWH 320 (919)
Q Consensus 302 l~~~l~~~~~LlVlDdv~~ 320 (919)
+........-++|++++.+
T Consensus 177 l~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 177 APRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHhhcCCcEEEEECCCC
Confidence 5554444446788899864
No 419
>PRK03839 putative kinase; Provisional
Probab=94.40 E-value=0.026 Score=55.61 Aligned_cols=22 Identities=41% Similarity=0.673 Sum_probs=20.2
Q ss_pred EEEEEecCCchHHHHHHHHHcc
Q 036584 228 VISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
.|.|.|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999983
No 420
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.37 E-value=0.038 Score=52.14 Aligned_cols=36 Identities=33% Similarity=0.340 Sum_probs=27.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEE
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVS 263 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 263 (919)
..||.|.|.+|.||||||+.+.+ +....-..+++++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 46899999999999999999998 4444444566664
No 421
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.37 E-value=0.44 Score=48.81 Aligned_cols=24 Identities=38% Similarity=0.393 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
-.+++|.|+.|.|||||++.++..
T Consensus 48 Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 48 GERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999973
No 422
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=94.36 E-value=0.45 Score=51.16 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
-.+++|+|+.|.|||||.+.+...
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999863
No 423
>PRK06217 hypothetical protein; Validated
Probab=94.35 E-value=0.065 Score=52.96 Aligned_cols=22 Identities=41% Similarity=0.492 Sum_probs=20.3
Q ss_pred EEEEEecCCchHHHHHHHHHcc
Q 036584 228 VISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
-|.|.|++|+||||+|+++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999974
No 424
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.34 E-value=0.33 Score=49.56 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.4
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
-.+++|+|+.|.|||||++.++..
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 458999999999999999999863
No 425
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.33 E-value=0.43 Score=49.55 Aligned_cols=24 Identities=42% Similarity=0.533 Sum_probs=21.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
-.+++|+|+.|+|||||++.++..
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 426
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.33 E-value=0.12 Score=53.49 Aligned_cols=99 Identities=11% Similarity=0.129 Sum_probs=53.0
Q ss_pred cEEEEEEecCCchHHHHH-HHHHcccCccCCCCEE-EEEEeCCCCC-HHHHHHHHHHHhcccccc---cccccCCHH---
Q 036584 226 RLVISIYGMGGLGKTTLA-RKLYHNNDVKNKFDYC-AWVSVSQDYK-IKDLLLRIIKSFNIMTAL---EDLETKTEE--- 296 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~~-~wv~~~~~~~-~~~~~~~il~~l~~~~~~---~~~~~~~~~--- 296 (919)
-+-++|.|.+|+|||+|| ..+.+. . +-+.+ +++-+++... ..++..++...-...... ...+.....
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~--~--~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQ--K--GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHh--c--CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 456899999999999995 666652 1 22334 6666666543 445555554322111000 011111111
Q ss_pred --HHHHHHHHHh--ccCceEEEEecccch-hHHHHHH
Q 036584 297 --DLARSLRKSL--EAYSYLMVIDDIWHK-EDWVSLK 328 (919)
Q Consensus 297 --~~~~~l~~~l--~~~~~LlVlDdv~~~-~~~~~l~ 328 (919)
...-.+.+++ +++..|+++||+-.. +.|.++.
T Consensus 145 a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEis 181 (274)
T cd01132 145 APYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQMS 181 (274)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHHH
Confidence 1122333444 588999999999543 3444443
No 427
>PRK00625 shikimate kinase; Provisional
Probab=94.33 E-value=0.028 Score=54.60 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 036584 228 VISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~ 248 (919)
.|.|+||+|+||||+++.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 428
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.32 E-value=0.25 Score=46.90 Aligned_cols=22 Identities=45% Similarity=0.683 Sum_probs=19.9
Q ss_pred EEEEEecCCchHHHHHHHHHcc
Q 036584 228 VISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
+|.|+|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999873
No 429
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.27 E-value=0.33 Score=54.44 Aligned_cols=95 Identities=16% Similarity=0.169 Sum_probs=54.8
Q ss_pred cEEEEEEecCCchHHHHH-HHHHcccCc-----cCCCCEEEEEEeCCCCCHHHHHHHHHHHhccccc-c--c-ccccCCH
Q 036584 226 RLVISIYGMGGLGKTTLA-RKLYHNNDV-----KNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTA-L--E-DLETKTE 295 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa-~~v~~~~~~-----~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-~--~-~~~~~~~ 295 (919)
-+-++|.|..|+|||+|| ..+.+...+ ..+-..++++-+++..+.-.-+.+.+++-+.... . . ..+....
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 456899999999999997 666765322 1244568888888876544434454544431110 0 0 0111111
Q ss_pred H-----HHHHHHHHHh--ccCceEEEEecccc
Q 036584 296 E-----DLARSLRKSL--EAYSYLMVIDDIWH 320 (919)
Q Consensus 296 ~-----~~~~~l~~~l--~~~~~LlVlDdv~~ 320 (919)
. -....+.+++ +++..|+|+||+-.
T Consensus 269 ~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 1 1122233444 58899999999954
No 430
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.25 E-value=0.05 Score=55.04 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 47899999999999999999874
No 431
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.23 E-value=0.55 Score=52.24 Aligned_cols=24 Identities=38% Similarity=0.434 Sum_probs=21.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHHc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
...+++++|+.|+||||++..+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356999999999999999988875
No 432
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=94.22 E-value=0.15 Score=59.19 Aligned_cols=46 Identities=17% Similarity=0.083 Sum_probs=36.4
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
+.++|....+.++++.+..-......|.|+|..|+||+++|+.+..
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHH
Confidence 4689988888888877764322345688999999999999999875
No 433
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.21 E-value=0.036 Score=55.09 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHHc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
+.++|.|.|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999999986
No 434
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.19 E-value=0.44 Score=49.67 Aligned_cols=24 Identities=29% Similarity=0.492 Sum_probs=21.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
-.+++|+|+.|.|||||++.++.-
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999963
No 435
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.18 E-value=0.21 Score=53.29 Aligned_cols=89 Identities=20% Similarity=0.265 Sum_probs=52.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccccccc-ccccCCHHHHHHHHH
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALE-DLETKTEEDLARSLR 303 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~-~~~~~~~~~~~~~l~ 303 (919)
..+++-|+|+.|+||||||..+... ....-..++||+....++.. .++.++.....- -......++....+.
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHH
Confidence 4579999999999999999998873 33334568999998776653 334443322110 112233455555555
Q ss_pred HHhc-cCceEEEEecccc
Q 036584 304 KSLE-AYSYLMVIDDIWH 320 (919)
Q Consensus 304 ~~l~-~~~~LlVlDdv~~ 320 (919)
+.++ +.--++|+|-|-.
T Consensus 125 ~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHTTSESEEEEE-CTT
T ss_pred HHhhcccccEEEEecCcc
Confidence 5554 4445899998853
No 436
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.17 E-value=0.047 Score=53.95 Aligned_cols=39 Identities=31% Similarity=0.457 Sum_probs=31.3
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCC
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQ 266 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 266 (919)
.++|.|+|+.|+|||||++.+.. ....+|..+++.+-..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~TTR~ 40 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHTTRP 40 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEESS-
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeecccC
Confidence 46899999999999999999998 5667786666666543
No 437
>PRK05922 type III secretion system ATPase; Validated
Probab=94.15 E-value=0.2 Score=55.75 Aligned_cols=91 Identities=9% Similarity=0.187 Sum_probs=49.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCC-CCHHHHHHHHHHHhccccccc---ccccC-----CHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQD-YKIKDLLLRIIKSFNIMTALE---DLETK-----TEE 296 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~~---~~~~~-----~~~ 296 (919)
...++|.|..|+|||||.+.+.+.. .. +..+.+-+++. ....+.+.+...........- ..+.. ...
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~---~~-d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGS---KS-TINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccC---CC-CceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 4568999999999999999999732 12 33333334332 333444444443322211100 11111 111
Q ss_pred HHHHHHHHHh--ccCceEEEEecccc
Q 036584 297 DLARSLRKSL--EAYSYLMVIDDIWH 320 (919)
Q Consensus 297 ~~~~~l~~~l--~~~~~LlVlDdv~~ 320 (919)
...-.+.+++ ++++.|+++||+-.
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhH
Confidence 2233344555 58999999999943
No 438
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.14 E-value=0.47 Score=52.94 Aligned_cols=40 Identities=18% Similarity=0.195 Sum_probs=32.5
Q ss_pred cCHHHHHHHHh-----cCCCCcEEEEEEecCCchHHHHHHHHHcc
Q 036584 210 DDTDLLLAKLL-----DKEQRRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 210 ~~~~~l~~~L~-----~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
+-+.++..||. .+..+.+++.|.|++|+||||-++.++..
T Consensus 89 kKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLske 133 (634)
T KOG1970|consen 89 KKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKE 133 (634)
T ss_pred HhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHh
Confidence 45677888887 34455679999999999999999999873
No 439
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.14 E-value=0.041 Score=56.13 Aligned_cols=20 Identities=40% Similarity=0.670 Sum_probs=19.1
Q ss_pred EEEEecCCchHHHHHHHHHc
Q 036584 229 ISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 229 v~I~G~~GiGKTtLa~~v~~ 248 (919)
|.|.|++|+||||+|+.++.
T Consensus 9 Ivl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999987
No 440
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.11 E-value=0.1 Score=58.95 Aligned_cols=102 Identities=16% Similarity=0.095 Sum_probs=53.8
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEE-EEEeCCCCCHHHHHHHHHHHhccccccccccc
Q 036584 214 LLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCA-WVSVSQDYKIKDLLLRIIKSFNIMTALEDLET 292 (919)
Q Consensus 214 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~-wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~ 292 (919)
++++.+..-. .-+-..|+|++|+|||||++.+++.. ...+-++.+ .+-+.+..... .++-+.+.........+.
T Consensus 405 RvIDll~PIG-kGQR~LIvgpp~aGKTtLL~~IAn~i-~~n~~~~~~ivvLIgERpeEV---tdm~rsVkgeVVasT~D~ 479 (672)
T PRK12678 405 RVIDLIMPIG-KGQRGLIVSPPKAGKTTILQNIANAI-TTNNPECHLMVVLVDERPEEV---TDMQRSVKGEVIASTFDR 479 (672)
T ss_pred eeeeeecccc-cCCEeEEeCCCCCCHHHHHHHHHHHH-hhcCCCeEEEEEEEeCchhhH---HHHHHhccceEEEECCCC
Confidence 4455554422 23567899999999999999999831 122334443 33444443222 223333321110001111
Q ss_pred -----CCHHHHHHHHHHHh--ccCceEEEEecccc
Q 036584 293 -----KTEEDLARSLRKSL--EAYSYLMVIDDIWH 320 (919)
Q Consensus 293 -----~~~~~~~~~l~~~l--~~~~~LlVlDdv~~ 320 (919)
.....+.-.+.+++ .++.+||++|++-.
T Consensus 480 p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 480 PPSDHTTVAELAIERAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchH
Confidence 11223333444555 68899999999843
No 441
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=94.08 E-value=0.62 Score=47.65 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
-.+++|+|..|.|||||++.++.-
T Consensus 6 Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 6 GELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999863
No 442
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.08 E-value=0.24 Score=59.94 Aligned_cols=112 Identities=16% Similarity=0.181 Sum_probs=56.6
Q ss_pred cCceEEEEecccch---hHHH----HHHhhCCCCCCCcEEEEEecchhhhhhcCCCCce--EecCCCChHhHHHHHHHHh
Q 036584 308 AYSYLMVIDDIWHK---EDWV----SLKSAFPENKIGSRVIITTRIKDVAERSDDRNYV--HELRFLRQDESWQLFCERA 378 (919)
Q Consensus 308 ~~~~LlVlDdv~~~---~~~~----~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~--~~l~~L~~~~~~~lf~~~~ 378 (919)
..+-|+++|..-.- .+.. .+...+. ..|+.+|+||...++.........+ ..+. ++. +... +..+.
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~-~~l~-p~Ykl 475 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDE-ETLS-PTYKL 475 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcC-CCCc-eEEEE
Confidence 47899999998642 2222 2333332 2478899999998876543322111 1111 111 1000 11111
Q ss_pred ccCCCCchhhHHHHHHHHHHcCCcchHHHHHHHHhcCCChHHHHHHHHHHH
Q 036584 379 FRNSKAEKGLENLGREMVQKCDGLPLAIVVLGGLLSTKRPQEWREVRNHIW 429 (919)
Q Consensus 379 ~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~~~~l~~~~~~~w~~~~~~~~ 429 (919)
... .+ -...|-+|++++ |+|-.+.--|..+......+..+++..+.
T Consensus 476 ~~G-~~---g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~ 521 (771)
T TIGR01069 476 LKG-IP---GESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLS 521 (771)
T ss_pred CCC-CC---CCcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 111 11 123466677766 78877777777665443445555555443
No 443
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.07 E-value=0.16 Score=56.41 Aligned_cols=91 Identities=13% Similarity=0.239 Sum_probs=49.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhcccccc---cccccCC-----HH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDY-KIKDLLLRIIKSFNIMTAL---EDLETKT-----EE 296 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~---~~~~~~~-----~~ 296 (919)
...++|+|..|+|||||++.+.+... . +..+..-+++.. ...++....+.+-...... ...+... ..
T Consensus 137 Gqri~I~G~sG~GKTtLl~~i~~~~~--~--~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~~ 212 (413)
T TIGR03497 137 GQRVGIFAGSGVGKSTLLGMIARNAK--A--DINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKAA 212 (413)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC--C--CeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHH
Confidence 56899999999999999999887322 1 222233344332 3444555444331111000 0111111 11
Q ss_pred HHHHHHHHHh--ccCceEEEEecccc
Q 036584 297 DLARSLRKSL--EAYSYLMVIDDIWH 320 (919)
Q Consensus 297 ~~~~~l~~~l--~~~~~LlVlDdv~~ 320 (919)
.....+.+++ +++..|+++||+-.
T Consensus 213 ~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (413)
T TIGR03497 213 FTATAIAEYFRDQGKDVLLMMDSVTR 238 (413)
T ss_pred HHHHHHHHHHHHCCCCEEEEEcCcHH
Confidence 2233344555 58899999999843
No 444
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.07 E-value=0.56 Score=47.63 Aligned_cols=24 Identities=38% Similarity=0.360 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..+++|+|..|.|||||++.++..
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 458999999999999999999864
No 445
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.06 E-value=0.23 Score=49.88 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=21.8
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..+++|+|..|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999874
No 446
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.06 E-value=0.092 Score=57.33 Aligned_cols=66 Identities=32% Similarity=0.326 Sum_probs=48.6
Q ss_pred CCCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHH
Q 036584 202 EENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLR 276 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 276 (919)
...++|+++.+..+...+..+. -+.+.|++|+|||+||+.++. ..... .++|.+.+.....+++..
T Consensus 23 ~~~~~g~~~~~~~~l~a~~~~~----~vll~G~PG~gKT~la~~lA~--~l~~~---~~~i~~t~~l~p~d~~G~ 88 (329)
T COG0714 23 EKVVVGDEEVIELALLALLAGG----HVLLEGPPGVGKTLLARALAR--ALGLP---FVRIQCTPDLLPSDLLGT 88 (329)
T ss_pred CCeeeccHHHHHHHHHHHHcCC----CEEEECCCCccHHHHHHHHHH--HhCCC---eEEEecCCCCCHHHhcCc
Confidence 3448998888888777777653 688999999999999999998 44444 456666666666555443
No 447
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.05 E-value=0.15 Score=57.66 Aligned_cols=24 Identities=46% Similarity=0.505 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHHc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
...+|+|+|++|+||||++..++.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999988876
No 448
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.03 E-value=0.15 Score=56.75 Aligned_cols=91 Identities=12% Similarity=0.166 Sum_probs=51.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCC-CCHHHHHHHHHHHhccccccc---ccccCCH-----H
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQD-YKIKDLLLRIIKSFNIMTALE---DLETKTE-----E 296 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~~---~~~~~~~-----~ 296 (919)
...++|+|..|+|||||++.+.+.. +.+..+++.+++. ....+.+.+....-....... ..+.... .
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~ 230 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL 230 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHH
Confidence 4588999999999999999998732 2344555555553 334455555432110000000 1111111 1
Q ss_pred HHHHHHHHHh--ccCceEEEEecccc
Q 036584 297 DLARSLRKSL--EAYSYLMVIDDIWH 320 (919)
Q Consensus 297 ~~~~~l~~~l--~~~~~LlVlDdv~~ 320 (919)
.....+.+++ ++++.||++||+-.
T Consensus 231 ~~a~tiAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 231 FVATTIAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCHHH
Confidence 1223344555 58899999999953
No 449
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.01 E-value=0.24 Score=53.25 Aligned_cols=25 Identities=44% Similarity=0.688 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
...++.++|++|+||||++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4679999999999999999999874
No 450
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.00 E-value=0.022 Score=57.34 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=15.8
Q ss_pred cCcccccccccccchhhccCCCCCCeEEeeec
Q 036584 711 NLQTLKYVQSKSWNKVNTAKLVNLRDLHIEED 742 (919)
Q Consensus 711 ~L~~L~~~~~~~~~~~~l~~l~~L~~L~i~~~ 742 (919)
.|+.|++.++.-.....+..|++|++|.++.+
T Consensus 44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDN 75 (260)
T ss_pred chhhhhhhccceeecccCCCcchhhhhcccCC
Confidence 34444443333334444555556666666655
No 451
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.99 E-value=0.14 Score=57.20 Aligned_cols=94 Identities=16% Similarity=0.263 Sum_probs=56.4
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCC-HHHHHHHHHHHhccccccc---ccccC-----CHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYK-IKDLLLRIIKSFNIMTALE---DLETK-----TEE 296 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~~~~~---~~~~~-----~~~ 296 (919)
-+-++|.|.+|+|||+|+.++.+... +.+-+.++|+-+++... ..+++.++...-....... ..+.. ...
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 45789999999999999999987522 23347888888876654 3455555544211110000 11111 112
Q ss_pred HHHHHHHHHh---ccCceEEEEecccc
Q 036584 297 DLARSLRKSL---EAYSYLMVIDDIWH 320 (919)
Q Consensus 297 ~~~~~l~~~l---~~~~~LlVlDdv~~ 320 (919)
...-.+.+++ ++++.|+++||+-.
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecChHH
Confidence 2334455665 36899999999843
No 452
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=93.98 E-value=0.061 Score=49.09 Aligned_cols=68 Identities=21% Similarity=0.255 Sum_probs=39.9
Q ss_pred EEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHHh
Q 036584 227 LVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSL 306 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l 306 (919)
+=|.|.|-||+||||+|.+++. ... .-|+++|.-.....+....-++. ..-..+.+.+.+.|...+
T Consensus 8 PNILvtGTPG~GKstl~~~lae--~~~-----~~~i~isd~vkEn~l~~gyDE~y-------~c~i~DEdkv~D~Le~~m 73 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAE--KTG-----LEYIEISDLVKENNLYEGYDEEY-------KCHILDEDKVLDELEPLM 73 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHH--HhC-----CceEehhhHHhhhcchhcccccc-------cCccccHHHHHHHHHHHH
Confidence 4578999999999999999996 222 34677764322222222211111 112345667777777666
Q ss_pred cc
Q 036584 307 EA 308 (919)
Q Consensus 307 ~~ 308 (919)
.+
T Consensus 74 ~~ 75 (176)
T KOG3347|consen 74 IE 75 (176)
T ss_pred hc
Confidence 44
No 453
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.98 E-value=0.049 Score=57.97 Aligned_cols=47 Identities=28% Similarity=0.429 Sum_probs=41.4
Q ss_pred CCCccccccCHHHHHHHHhcC----CCCcEEEEEEecCCchHHHHHHHHHc
Q 036584 202 EENPVGFEDDTDLLLAKLLDK----EQRRLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
...|+|.++.++++++.+... +...+++.++|+.|.||||||..+.+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999763 44678999999999999999999986
No 454
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=93.94 E-value=0.21 Score=56.09 Aligned_cols=92 Identities=12% Similarity=0.161 Sum_probs=49.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHh--ccc------ccccccccCCHH
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSF--NIM------TALEDLETKTEE 296 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l--~~~------~~~~~~~~~~~~ 296 (919)
....++|+|..|+|||||++.+..... ....++++.-....+..++....+..- ... .+.+........
T Consensus 157 ~Gq~i~I~G~sG~GKStLl~~I~~~~~---~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~~ 233 (438)
T PRK07721 157 KGQRVGIFAGSGVGKSTLMGMIARNTS---ADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKGA 233 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcccC---CCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHHH
Confidence 356899999999999999999987322 223444443333334444443322211 110 000000011112
Q ss_pred HHHHHHHHHh--ccCceEEEEeccc
Q 036584 297 DLARSLRKSL--EAYSYLMVIDDIW 319 (919)
Q Consensus 297 ~~~~~l~~~l--~~~~~LlVlDdv~ 319 (919)
.....+.+++ ++++.||++||+-
T Consensus 234 ~~a~~iAEyfr~~g~~Vll~~Dslt 258 (438)
T PRK07721 234 YTATAIAEYFRDQGLNVMLMMDSVT 258 (438)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeChH
Confidence 2233344555 6899999999984
No 455
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=93.93 E-value=1.8 Score=45.67 Aligned_cols=136 Identities=12% Similarity=0.108 Sum_probs=71.0
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccc--ccccc
Q 036584 213 DLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMT--ALEDL 290 (919)
Q Consensus 213 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~--~~~~~ 290 (919)
+.+...+..+. -.....++|+.|+||+++|..++... .... .. . ..+.+........ -.++.
T Consensus 7 ~~L~~~i~~~r-l~HAyLf~G~~G~Gk~~lA~~~A~~l-lC~~----------~~-~---~c~~~~~~~HPD~~~i~p~~ 70 (290)
T PRK05917 7 EALIQRVRDQK-VPSAIILHGQDLSNLSARAYELASLI-LKET----------SP-E---AAYKISQKIHPDIHEFSPQG 70 (290)
T ss_pred HHHHHHHHcCC-cCeeEeeECCCCCcHHHHHHHHHHHH-hCCC----------Cc-c---HHHHHhcCCCCCEEEEecCC
Confidence 44555555542 24577899999999999999888631 1100 00 0 0111111100000 00000
Q ss_pred c--cCCHHHHHHHHHHHh-----ccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecch-hhhhhcCCCCceE
Q 036584 291 E--TKTEEDLARSLRKSL-----EAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRIK-DVAERSDDRNYVH 360 (919)
Q Consensus 291 ~--~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~~~~ 360 (919)
. ....++. +.+.+.+ .++.-++|+|+++.. +.+..++..+-.-..++.+|++|.+. .+...+.+....+
T Consensus 71 ~~~~I~idqi-R~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~ 149 (290)
T PRK05917 71 KGRLHSIETP-RAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSI 149 (290)
T ss_pred CCCcCcHHHH-HHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEE
Confidence 0 1123333 3344444 345568999999854 57888888877666667777666653 4433333333556
Q ss_pred ecCCC
Q 036584 361 ELRFL 365 (919)
Q Consensus 361 ~l~~L 365 (919)
.+.++
T Consensus 150 ~~~~~ 154 (290)
T PRK05917 150 HIPME 154 (290)
T ss_pred Eccch
Confidence 66654
No 456
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.93 E-value=0.046 Score=55.09 Aligned_cols=30 Identities=27% Similarity=0.556 Sum_probs=24.6
Q ss_pred HhcCCCCcEEEEEEecCCchHHHHHHHHHc
Q 036584 219 LLDKEQRRLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 219 L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
+.+.....+.|.|+|++|+|||||++.+..
T Consensus 6 ~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 6 LFNKPAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred ccCCCCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 334444678999999999999999999975
No 457
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.92 E-value=0.42 Score=53.20 Aligned_cols=123 Identities=18% Similarity=0.268 Sum_probs=65.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccccc--cc-cccc-----CCHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTA--LE-DLET-----KTEED 297 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~--~~-~~~~-----~~~~~ 297 (919)
...++|+|..|+|||||++.++.... ....++...-.+.....+.+...+..-+.... .. ..+. .....
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~ 232 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNAK---ADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAK 232 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCC---CCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHH
Confidence 45889999999999999999997432 12233433333335666666655554221110 00 0011 11222
Q ss_pred HHHHHHHHh--ccCceEEEEecccch-hHHHHHH---hhCCCCCCCcEEEEEecchhhhhhc
Q 036584 298 LARSLRKSL--EAYSYLMVIDDIWHK-EDWVSLK---SAFPENKIGSRVIITTRIKDVAERS 353 (919)
Q Consensus 298 ~~~~l~~~l--~~~~~LlVlDdv~~~-~~~~~l~---~~l~~~~~gs~iivTtr~~~v~~~~ 353 (919)
....+.+++ ++++.||++||+-.. +...++. ...|.. |--..+.|....+....
T Consensus 233 ~a~~iAEyfr~~G~~VLlilDslTr~a~A~reisl~~~e~p~~--G~~~~~~s~l~~L~ERa 292 (432)
T PRK06793 233 LATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELPIG--GKTLLMESYMKKLLERS 292 (432)
T ss_pred HHHHHHHHHHHcCCcEEEEecchHHHHHHHHHHHHHhcCCCCC--CeeeeeeccchhHHHHh
Confidence 333344444 588999999998543 2223332 223322 44455555545444443
No 458
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=93.92 E-value=0.41 Score=48.10 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=31.4
Q ss_pred HHHHHhccCceEEEEecccc---hhHHH-HHHhhCCCC-CC-CcEEEEEecchhhhhh
Q 036584 301 SLRKSLEAYSYLMVIDDIWH---KEDWV-SLKSAFPEN-KI-GSRVIITTRIKDVAER 352 (919)
Q Consensus 301 ~l~~~l~~~~~LlVlDdv~~---~~~~~-~l~~~l~~~-~~-gs~iivTtr~~~v~~~ 352 (919)
.+...+..++-++++|+.-. ..... .+...+... .. |..||++|.+.+....
T Consensus 131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~ 188 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA 188 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh
Confidence 35556667889999999753 22333 444444322 11 5568888888776654
No 459
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=93.89 E-value=0.17 Score=47.35 Aligned_cols=38 Identities=16% Similarity=0.304 Sum_probs=29.0
Q ss_pred EEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeC
Q 036584 227 LVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVS 265 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 265 (919)
--+.|+|-||+||+++.+.+|.- -....|...+||+.-
T Consensus 21 iK~vivGng~VGKssmiqryCkg-ifTkdykktIgvdfl 58 (246)
T KOG4252|consen 21 IKFVIVGNGSVGKSSMIQRYCKG-IFTKDYKKTIGVDFL 58 (246)
T ss_pred EEEEEECCCccchHHHHHHHhcc-ccccccccccchhhh
Confidence 34679999999999999999963 334556667887653
No 460
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=93.89 E-value=0.21 Score=55.75 Aligned_cols=91 Identities=10% Similarity=0.186 Sum_probs=50.3
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhccccccc---ccccCC-----HH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDY-KIKDLLLRIIKSFNIMTALE---DLETKT-----EE 296 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~---~~~~~~-----~~ 296 (919)
...++|+|..|+|||||++.+.... ..+.++...+.... ...++...+...-....... ..+... ..
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~~----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~ 243 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRFT----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAA 243 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHH
Confidence 4579999999999999999998631 12344444444433 34444444443321111000 111111 11
Q ss_pred HHHHHHHHHh--ccCceEEEEecccc
Q 036584 297 DLARSLRKSL--EAYSYLMVIDDIWH 320 (919)
Q Consensus 297 ~~~~~l~~~l--~~~~~LlVlDdv~~ 320 (919)
.....+.+++ ++++.||++||+-.
T Consensus 244 ~~a~aiAEyfrd~G~~VLl~~DslTR 269 (451)
T PRK05688 244 MYCTRIAEYFRDKGKNVLLLMDSLTR 269 (451)
T ss_pred HHHHHHHHHHHHCCCCEEEEecchhH
Confidence 2223344555 68999999999853
No 461
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.89 E-value=0.2 Score=55.71 Aligned_cols=24 Identities=42% Similarity=0.509 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHHc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
...+|.++|++|+||||++..++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999988876
No 462
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.84 E-value=0.5 Score=47.44 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.8
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
-.+++|+|..|.|||||++.+..-
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhccc
Confidence 469999999999999999999874
No 463
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.83 E-value=0.22 Score=57.66 Aligned_cols=99 Identities=18% Similarity=0.270 Sum_probs=0.0
Q ss_pred cCCCCCCccccccCHHHHHHHHhc----------CCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCC
Q 036584 198 SFAVEENPVGFEDDTDLLLAKLLD----------KEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQD 267 (919)
Q Consensus 198 ~~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 267 (919)
|.+.=+++=|.++-+.+|.+-+.- +-.+..-|.+||++|.|||-||++|+. ... ..|++|-.+
T Consensus 667 PnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVAT--Ecs-----L~FlSVKGP 739 (953)
T KOG0736|consen 667 PNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVAT--ECS-----LNFLSVKGP 739 (953)
T ss_pred CccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHh--hce-----eeEEeecCH
Q ss_pred CCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHHhccCceEEEEecccc
Q 036584 268 YKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWH 320 (919)
Q Consensus 268 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~ 320 (919)
+++..--++.. +.+.+...+.=..++++|+||.+++
T Consensus 740 --------ELLNMYVGqSE---------~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 --------ELLNMYVGQSE---------ENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred --------HHHHHHhcchH---------HHHHHHHHHhhccCCeEEEeccccc
No 464
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.82 E-value=0.49 Score=45.94 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHHcc
Q 036584 227 LVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
+.|.+.|.+|+||||+|++.+..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~ 24 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKE 24 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHH
Confidence 46789999999999999999873
No 465
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.81 E-value=0.17 Score=56.57 Aligned_cols=93 Identities=20% Similarity=0.270 Sum_probs=54.4
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhcccccc--c-ccccCC-----HH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDY-KIKDLLLRIIKSFNIMTAL--E-DLETKT-----EE 296 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~--~-~~~~~~-----~~ 296 (919)
-+-++|.|.+|+|||||+.++....... +=+.++++-+++.. ...+++.++...-...... . ..+... ..
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 4578999999999999999887642211 12457777776654 3455666655432111100 0 111111 11
Q ss_pred HHHHHHHHHh---ccCceEEEEeccc
Q 036584 297 DLARSLRKSL---EAYSYLMVIDDIW 319 (919)
Q Consensus 297 ~~~~~l~~~l---~~~~~LlVlDdv~ 319 (919)
...-.+.+++ ++++.||++||+-
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchH
Confidence 2233455665 6789999999984
No 466
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.78 E-value=0.071 Score=62.56 Aligned_cols=76 Identities=12% Similarity=0.099 Sum_probs=57.2
Q ss_pred CCCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 036584 202 EENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSF 281 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 281 (919)
-++++|.++.++.+...+... +.+.|+|++|+||||+|+.+.+. -....++..+|... ...+...+++.+..++
T Consensus 30 ~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~-l~~~~~~~~~~~~n-p~~~~~~~~~~v~~~~ 103 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAEL-LPKEELQDILVYPN-PEDPNNPKIRTVPAGK 103 (637)
T ss_pred HHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHH-cChHhHHHheEeeC-CCcchHHHHHHHHHhc
Confidence 356889888888887777654 36889999999999999999974 22334577888766 3446777888888766
Q ss_pred cc
Q 036584 282 NI 283 (919)
Q Consensus 282 ~~ 283 (919)
+.
T Consensus 104 G~ 105 (637)
T PRK13765 104 GK 105 (637)
T ss_pred CH
Confidence 65
No 467
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.78 E-value=0.045 Score=53.55 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=21.3
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
...|.|+|++|+||||+|+.++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999998
No 468
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.78 E-value=0.32 Score=50.55 Aligned_cols=54 Identities=24% Similarity=0.209 Sum_probs=38.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSF 281 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 281 (919)
...++.|.|.+|+|||+++..++.+.... +=..++|++... +..++...++...
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~-~g~~vly~s~E~--~~~~~~~r~~~~~ 65 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKK-QGKPVLFFSLEM--SKEQLLQRLLASE 65 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCceEEEeCCC--CHHHHHHHHHHHh
Confidence 35699999999999999999987642222 123578887765 4566777666543
No 469
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.76 E-value=0.078 Score=47.62 Aligned_cols=46 Identities=22% Similarity=0.377 Sum_probs=31.6
Q ss_pred CccccccCHHHHHHHH----hcC-CCCcEEEEEEecCCchHHHHHHHHHcc
Q 036584 204 NPVGFEDDTDLLLAKL----LDK-EQRRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 204 ~~vGr~~~~~~l~~~L----~~~-~~~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
.++|..-..+.+++.+ ... ..+.-|++.+|.+|+|||.+++.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 4555544444444444 332 345679999999999999998888875
No 470
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.76 E-value=0.2 Score=55.76 Aligned_cols=90 Identities=13% Similarity=0.234 Sum_probs=49.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhcccccc--c-ccccCC-----HH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDY-KIKDLLLRIIKSFNIMTAL--E-DLETKT-----EE 296 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~--~-~~~~~~-----~~ 296 (919)
...++|+|..|+|||||++.+.+... .+..+...+++.. ...++...+...-...... . ..+... ..
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~ 212 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAA 212 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHH
Confidence 45799999999999999999987321 2344445555443 3444444443321110000 0 111111 11
Q ss_pred HHHHHHHHHh--ccCceEEEEeccc
Q 036584 297 DLARSLRKSL--EAYSYLMVIDDIW 319 (919)
Q Consensus 297 ~~~~~l~~~l--~~~~~LlVlDdv~ 319 (919)
...-.+.+++ ++++.|+++||+-
T Consensus 213 ~~a~tiAEyfr~~G~~Vll~~Dslt 237 (411)
T TIGR03496 213 FYATAIAEYFRDQGKDVLLLMDSLT 237 (411)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeChH
Confidence 2223334444 6889999999984
No 471
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=93.74 E-value=0.52 Score=57.33 Aligned_cols=178 Identities=18% Similarity=0.200 Sum_probs=86.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcccC--------------ccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccccccccc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHNND--------------VKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDL 290 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~~~--------------~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~ 290 (919)
..+++.|.|+.+.||||+.+.+.--.- .-..|+ .++..++...+...-+......
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~-~i~~~ig~~~si~~~lStfS~~---------- 394 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFK-EIFADIGDEQSIEQSLSTFSGH---------- 394 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccc-eEEEecCCccchhhchhHHHHH----------
Confidence 457899999999999999988853200 011222 2233333322221111111100
Q ss_pred ccCCHHHHHHHHHHHhccCceEEEEecccch---hHHH----HHHhhCCCCCCCcEEEEEecchhhhhhcCCCCce--Ee
Q 036584 291 ETKTEEDLARSLRKSLEAYSYLMVIDDIWHK---EDWV----SLKSAFPENKIGSRVIITTRIKDVAERSDDRNYV--HE 361 (919)
Q Consensus 291 ~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---~~~~----~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~--~~ 361 (919)
..+....+. .+ ..+.|+++|....- .+-. .+...+.. .|+.+|+||...++.........+ ..
T Consensus 395 ----m~~~~~Il~-~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~--~~~~vIitTH~~el~~~~~~~~~v~~~~ 466 (782)
T PRK00409 395 ----MTNIVRILE-KA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRK--RGAKIIATTHYKELKALMYNREGVENAS 466 (782)
T ss_pred ----HHHHHHHHH-hC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHH--CCCEEEEECChHHHHHHHhcCCCeEEEE
Confidence 111112121 22 46789999998632 2222 23333322 378899999998887665433211 11
Q ss_pred cCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHHHHHhcCCChHHHHHHHHHHH
Q 036584 362 LRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVLGGLLSTKRPQEWREVRNHIW 429 (919)
Q Consensus 362 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~~~~l~~~~~~~w~~~~~~~~ 429 (919)
+.. +. +... +...... +.+ -...|-+|++++ |+|-.+..-|..+-........++++.+.
T Consensus 467 ~~~-d~-~~l~-~~Ykl~~-G~~---g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~ 526 (782)
T PRK00409 467 VEF-DE-ETLR-PTYRLLI-GIP---GKSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLE 526 (782)
T ss_pred EEE-ec-CcCc-EEEEEee-CCC---CCcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 111 11 1100 1111111 111 123466677776 78887777777665544445555555443
No 472
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.71 E-value=0.23 Score=50.47 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=19.3
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 036584 228 VISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~ 248 (919)
.|.|.|++|+||||+|+.++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999986
No 473
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.69 E-value=0.24 Score=52.58 Aligned_cols=31 Identities=32% Similarity=0.433 Sum_probs=26.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcccCccCCCC
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHNNDVKNKFD 257 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~ 257 (919)
..+-|.++|++|.|||-||+.++. +....|-
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Ak--eaga~fI 156 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAK--EAGANFI 156 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHH--HcCCCcc
Confidence 356889999999999999999998 5666663
No 474
>PRK13947 shikimate kinase; Provisional
Probab=93.67 E-value=0.043 Score=53.54 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 036584 228 VISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~ 248 (919)
-|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999998
No 475
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=93.64 E-value=0.21 Score=55.55 Aligned_cols=94 Identities=12% Similarity=0.137 Sum_probs=57.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCcc-----------CCCCEEEEEEeCCCCCHHHHHHHHHHHhc-cccccc---cc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVK-----------NKFDYCAWVSVSQDYKIKDLLLRIIKSFN-IMTALE---DL 290 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~-----------~~f~~~~wv~~~~~~~~~~~~~~il~~l~-~~~~~~---~~ 290 (919)
-+-++|.|-+|+|||||+.++.+..... +.=..++++-+++.....+.+.+.+..-+ .....- ..
T Consensus 141 GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~ats 220 (466)
T TIGR01040 141 GQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLA 220 (466)
T ss_pred CCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECC
Confidence 4568999999999999999999754310 01115777788887666676666666544 111100 11
Q ss_pred ccCC-----HHHHHHHHHHHhc---cCceEEEEeccc
Q 036584 291 ETKT-----EEDLARSLRKSLE---AYSYLMVIDDIW 319 (919)
Q Consensus 291 ~~~~-----~~~~~~~l~~~l~---~~~~LlVlDdv~ 319 (919)
+... .....-.+.++++ +++.|+++||+-
T Consensus 221 d~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslT 257 (466)
T TIGR01040 221 NDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMS 257 (466)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChH
Confidence 1111 1122333555554 689999999984
No 476
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.63 E-value=0.66 Score=46.52 Aligned_cols=120 Identities=17% Similarity=0.153 Sum_probs=58.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCc--cCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDV--KNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLR 303 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~--~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 303 (919)
.+++.|.|+.|.||||+.+.+..-.-. .+.| |.+.. .. -.+...|...+....... ........-...+.
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~-----vpa~~-~~-l~~~d~I~~~~~~~d~~~-~~~S~fs~e~~~~~ 100 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMAQIGCF-----VPAEY-AT-LPIFNRLLSRLSNDDSME-RNLSTFASEMSETA 100 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCC-----cchhh-cC-ccChhheeEecCCccccc-hhhhHHHHHHHHHH
Confidence 478999999999999999888642111 1111 11110 00 011122222221111000 00000000011122
Q ss_pred HHh--ccCceEEEEecccc---hhH----HHHHHhhCCCCCCCcEEEEEecchhhhhhcCC
Q 036584 304 KSL--EAYSYLMVIDDIWH---KED----WVSLKSAFPENKIGSRVIITTRIKDVAERSDD 355 (919)
Q Consensus 304 ~~l--~~~~~LlVlDdv~~---~~~----~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~ 355 (919)
..+ ..++-|+++|+... ..+ ...+...+... |+.+|++|...+++.....
T Consensus 101 ~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~--~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 101 YILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKK--ESTVFFATHFRDIAAILGN 159 (204)
T ss_pred HHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhc--CCEEEEECChHHHHHHhhc
Confidence 222 35678999999732 222 12333333322 7889999999988877653
No 477
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.62 E-value=0.05 Score=53.54 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHHcc
Q 036584 227 LVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
.+++|+|++|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999874
No 478
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=93.60 E-value=0.56 Score=51.19 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.5
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..+++|+|+.|.|||||++.+..-
T Consensus 31 Gei~gIiG~sGaGKSTLlr~I~gl 54 (343)
T TIGR02314 31 GQIYGVIGASGAGKSTLIRCVNLL 54 (343)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999863
No 479
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=93.59 E-value=0.68 Score=49.85 Aligned_cols=23 Identities=39% Similarity=0.433 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
..+++|+|+.|.|||||.+.+..
T Consensus 19 Ge~~~l~G~NGaGKSTLl~~l~G 41 (302)
T TIGR01188 19 GEVFGFLGPNGAGKTTTIRMLTT 41 (302)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999986
No 480
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.59 E-value=0.72 Score=53.15 Aligned_cols=129 Identities=19% Similarity=0.171 Sum_probs=0.0
Q ss_pred EEEEecCCchHHHHHHHHHcccCcc------CCCCEEEEEEeCCCCCH-----------------HHHHHHHHHHhcccc
Q 036584 229 ISIYGMGGLGKTTLARKLYHNNDVK------NKFDYCAWVSVSQDYKI-----------------KDLLLRIIKSFNIMT 285 (919)
Q Consensus 229 v~I~G~~GiGKTtLa~~v~~~~~~~------~~f~~~~wv~~~~~~~~-----------------~~~~~~il~~l~~~~ 285 (919)
|+|+|+.|+|||||.+.+....... +.--.+.++.-...... +..++..+..+.-..
T Consensus 351 iaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~ 430 (530)
T COG0488 351 IAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTG 430 (530)
T ss_pred EEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCCh
Q ss_pred ccc--ccccCCHHHHHHHHHHHh-ccCceEEEEe------cccchhHHHHHHhhCCCCCCCcEEEEEecchhhhhhcCCC
Q 036584 286 ALE--DLETKTEEDLARSLRKSL-EAYSYLMVID------DIWHKEDWVSLKSAFPENKIGSRVIITTRIKDVAERSDDR 356 (919)
Q Consensus 286 ~~~--~~~~~~~~~~~~~l~~~l-~~~~~LlVlD------dv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~ 356 (919)
... .+...+-.+..+.....+ -.++-+|||| |+...+..+..+..++ |+ ||+.|.++.....+..
T Consensus 431 ~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~----Gt-vl~VSHDr~Fl~~va~- 504 (530)
T COG0488 431 EDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE----GT-VLLVSHDRYFLDRVAT- 504 (530)
T ss_pred HHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC----Ce-EEEEeCCHHHHHhhcc-
Q ss_pred CceEecCC
Q 036584 357 NYVHELRF 364 (919)
Q Consensus 357 ~~~~~l~~ 364 (919)
.++.+++
T Consensus 505 -~i~~~~~ 511 (530)
T COG0488 505 -RIWLVED 511 (530)
T ss_pred -eEEEEcC
No 481
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.58 E-value=0.087 Score=49.22 Aligned_cols=39 Identities=26% Similarity=0.331 Sum_probs=27.9
Q ss_pred EEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCC
Q 036584 227 LVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQ 266 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 266 (919)
++|.|+|..|+|||||++.+.+.. .+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 489999999999999999999842 235566666666655
No 482
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=93.58 E-value=0.17 Score=56.89 Aligned_cols=95 Identities=13% Similarity=0.173 Sum_probs=54.5
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCC--CEEEEEEeCCCC-CHHHHHHHHHHHhccccccc---ccccCC-----
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKF--DYCAWVSVSQDY-KIKDLLLRIIKSFNIMTALE---DLETKT----- 294 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~---~~~~~~----- 294 (919)
-+-++|.|..|+|||||+..+.+.....+.+ -.++++-+++.. ...+++..+...-......- ..+...
T Consensus 141 GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~ 220 (458)
T TIGR01041 141 GQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIV 220 (458)
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHH
Confidence 4578999999999999999999854332212 156677776654 34555555543321111000 011111
Q ss_pred HHHHHHHHHHHhc---cCceEEEEecccc
Q 036584 295 EEDLARSLRKSLE---AYSYLMVIDDIWH 320 (919)
Q Consensus 295 ~~~~~~~l~~~l~---~~~~LlVlDdv~~ 320 (919)
.......+.++++ +++.||++||+-.
T Consensus 221 a~~~a~tiAEyfr~d~G~~VLli~DslTR 249 (458)
T TIGR01041 221 TPRMALTAAEYLAFEKDMHVLVILTDMTN 249 (458)
T ss_pred HHHHHHHHHHHHHHccCCcEEEEEcChhH
Confidence 1122333555554 7889999999843
No 483
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.55 E-value=0.061 Score=52.72 Aligned_cols=25 Identities=40% Similarity=0.626 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
+..+|.|.|++|+||||+|+.++..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999999999974
No 484
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.51 E-value=0.058 Score=50.32 Aligned_cols=22 Identities=36% Similarity=0.697 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHHcc
Q 036584 228 VISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
.|+|+|+.|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999973
No 485
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.51 E-value=0.052 Score=53.07 Aligned_cols=24 Identities=50% Similarity=0.645 Sum_probs=22.1
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..+|+|-||=|+||||||+...++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 468999999999999999999984
No 486
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=93.51 E-value=0.23 Score=55.76 Aligned_cols=90 Identities=13% Similarity=0.248 Sum_probs=47.3
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCC-CCHHHHHHHHHHHhccccccc---ccccCC-----HH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQD-YKIKDLLLRIIKSFNIMTALE---DLETKT-----EE 296 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~~---~~~~~~-----~~ 296 (919)
...++|.|..|+|||||++.+.... .. +..+...++.. ....++....+..-....... ..+... ..
T Consensus 163 Gq~~~I~G~sG~GKStLl~~I~~~~---~~-~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~~p~~r~~~~ 238 (440)
T TIGR01026 163 GQRIGIFAGSGVGKSTLLGMIARNT---EA-DVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQSPLLRLKGA 238 (440)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CC-CEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHH
Confidence 4578999999999999999998732 12 23333444433 233444434333211100000 001111 11
Q ss_pred HHHHHHHHHh--ccCceEEEEeccc
Q 036584 297 DLARSLRKSL--EAYSYLMVIDDIW 319 (919)
Q Consensus 297 ~~~~~l~~~l--~~~~~LlVlDdv~ 319 (919)
...-.+.+++ +++..|+++||+-
T Consensus 239 ~~a~t~AE~frd~G~~Vll~~DslT 263 (440)
T TIGR01026 239 YVATAIAEYFRDQGKDVLLLMDSVT 263 (440)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeChH
Confidence 2222334444 6889999999984
No 487
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=93.50 E-value=0.86 Score=51.97 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..+++|+|+.|.|||||++.++.-
T Consensus 50 GEivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 50 GEIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 458999999999999999999863
No 488
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.46 E-value=0.046 Score=54.83 Aligned_cols=22 Identities=41% Similarity=0.623 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHHcc
Q 036584 228 VISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
+|+|.|++|+||||||+.+..-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 489
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.45 E-value=0.096 Score=52.38 Aligned_cols=23 Identities=43% Similarity=0.508 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
-.+++|+|..|+|||||++.++-
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 45899999999999999999974
No 490
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.45 E-value=0.28 Score=56.53 Aligned_cols=99 Identities=15% Similarity=0.130 Sum_probs=57.1
Q ss_pred HHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCC-CEEEEEEeCCCCCHHHHHHHHHHHhccccc-------
Q 036584 215 LLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKF-DYCAWVSVSQDYKIKDLLLRIIKSFNIMTA------- 286 (919)
Q Consensus 215 l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~il~~l~~~~~------- 286 (919)
+.+.|..+=.+.+++.|.|++|+||||||.++... -..++ +..+||+..+. ..++.+. +..++....
T Consensus 10 LD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~--g~~~~ge~~lyvs~eE~--~~~l~~~-~~~~G~~~~~~~~~g~ 84 (484)
T TIGR02655 10 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYN--GIIHFDEPGVFVTFEES--PQDIIKN-ARSFGWDLQKLVDEGK 84 (484)
T ss_pred HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--HHHhCCCCEEEEEEecC--HHHHHHH-HHHcCCCHHHHhhcCc
Confidence 34444444345789999999999999999999752 11222 45888888643 3444333 333332110
Q ss_pred c------c------ccccCCHHHHHHHHHHHh-ccCceEEEEecc
Q 036584 287 L------E------DLETKTEEDLARSLRKSL-EAYSYLMVIDDI 318 (919)
Q Consensus 287 ~------~------~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv 318 (919)
. + ..+..+.+.....+...+ .+++-.+|+|-+
T Consensus 85 l~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl 129 (484)
T TIGR02655 85 LFILDASPDPEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSV 129 (484)
T ss_pred eEEEecCchhccccccccCCHHHHHHHHHHHHHHhCCcEEEEeeh
Confidence 0 0 011234455666666666 446667888844
No 491
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=93.40 E-value=0.27 Score=57.21 Aligned_cols=105 Identities=18% Similarity=0.155 Sum_probs=62.3
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccccc-----
Q 036584 212 TDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTA----- 286 (919)
Q Consensus 212 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~----- 286 (919)
+..+.+.|..+=...+++.|.|.+|+|||+||.++.... ...+=..++|++..+. .+++...+. .++....
T Consensus 17 I~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~-~~~~ge~~lyis~ee~--~~~i~~~~~-~~g~d~~~~~~~ 92 (509)
T PRK09302 17 IEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNG-IKRFDEPGVFVTFEES--PEDIIRNVA-SFGWDLQKLIDE 92 (509)
T ss_pred chhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCEEEEEccCC--HHHHHHHHH-HcCCCHHHHhhC
Confidence 344555565544456799999999999999999987631 2221355889988764 334444432 2322100
Q ss_pred --c------cc------cccCCHHHHHHHHHHHhc-cCceEEEEecccc
Q 036584 287 --L------ED------LETKTEEDLARSLRKSLE-AYSYLMVIDDIWH 320 (919)
Q Consensus 287 --~------~~------~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~ 320 (919)
. +. ....+.+.+...+.+.+. .+.-.+|+|.+..
T Consensus 93 g~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~ 141 (509)
T PRK09302 93 GKLFILDASPDPSEQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEA 141 (509)
T ss_pred CeEEEEecCcccccccccccccHHHHHHHHHHHHHhhCCCEEEECCHHH
Confidence 0 00 011234566666666663 3556799999863
No 492
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=93.40 E-value=0.08 Score=56.51 Aligned_cols=48 Identities=25% Similarity=0.314 Sum_probs=34.1
Q ss_pred CCCccccccCHHH---HHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcc
Q 036584 202 EENPVGFEDDTDL---LLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 202 ~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
...+||..+..+. +++++.++.-.-+.|.|.|++|.|||+||..+.+.
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~e 73 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKE 73 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHH
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHH
Confidence 3568887655543 67777776555789999999999999999999984
No 493
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.39 E-value=0.25 Score=54.92 Aligned_cols=91 Identities=14% Similarity=0.246 Sum_probs=52.5
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCC-HHHHHHHHHHHhcccccc--c-ccccCC-----HH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYK-IKDLLLRIIKSFNIMTAL--E-DLETKT-----EE 296 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~~~~--~-~~~~~~-----~~ 296 (919)
...++|.|..|+|||||.+.+++... -+.++++-+++... ..++....+..-...... . ..+... ..
T Consensus 162 Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAG 237 (439)
T ss_pred CCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHH
Confidence 46899999999999999999997422 25677777776543 344444433221110000 0 111111 11
Q ss_pred HHHHHHHHHh--ccCceEEEEecccc
Q 036584 297 DLARSLRKSL--EAYSYLMVIDDIWH 320 (919)
Q Consensus 297 ~~~~~l~~~l--~~~~~LlVlDdv~~ 320 (919)
...-.+.+++ ++++.|+++||+-.
T Consensus 238 ~~a~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 238 FVATSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1122344444 68999999999843
No 494
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.39 E-value=0.76 Score=45.70 Aligned_cols=58 Identities=16% Similarity=0.130 Sum_probs=35.3
Q ss_pred HHHHHHHhccCceEEEEecccchhHHHHH---HhhCCC-CCCCcEEEEEecchhhhhhcCCC
Q 036584 299 ARSLRKSLEAYSYLMVIDDIWHKEDWVSL---KSAFPE-NKIGSRVIITTRIKDVAERSDDR 356 (919)
Q Consensus 299 ~~~l~~~l~~~~~LlVlDdv~~~~~~~~l---~~~l~~-~~~gs~iivTtr~~~v~~~~~~~ 356 (919)
...+.+.+--++-+.|||..++--+.+.+ ...+.. ...|+-+++.|....++....+.
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD 213 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPD 213 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCC
Confidence 44555555566789999998754333332 222211 22366678888888888887654
No 495
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=93.39 E-value=0.39 Score=55.93 Aligned_cols=103 Identities=21% Similarity=0.196 Sum_probs=60.7
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccccc-----
Q 036584 212 TDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTA----- 286 (919)
Q Consensus 212 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~----- 286 (919)
++.+.+.|..+=....++.|.|.+|+|||++|..++.+. ...-..++|++..+. ...+...+ .+++....
T Consensus 259 i~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~--~~~g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~ 333 (509)
T PRK09302 259 VPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAA--CRRGERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEK 333 (509)
T ss_pred cHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHH--HhCCCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhc
Confidence 445556564443446799999999999999999998742 223356888887654 34443332 34432110
Q ss_pred ----c--cccccCCHHHHHHHHHHHhc-cCceEEEEeccc
Q 036584 287 ----L--EDLETKTEEDLARSLRKSLE-AYSYLMVIDDIW 319 (919)
Q Consensus 287 ----~--~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~ 319 (919)
. ........+.....+.+.+. .+.-++|+|.+.
T Consensus 334 g~l~i~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDslt 373 (509)
T PRK09302 334 GLLKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPLS 373 (509)
T ss_pred CCceeecCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 0 00112234555666666553 345578888874
No 496
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.38 E-value=0.13 Score=53.89 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=18.4
Q ss_pred EEEEEEecCCchHHHHHHHHHcc
Q 036584 227 LVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
+.|.|.|.||+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 46899999999999999999874
No 497
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.35 E-value=0.06 Score=52.74 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=21.2
Q ss_pred EEEEEEecCCchHHHHHHHHHcc
Q 036584 227 LVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999873
No 498
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.35 E-value=0.052 Score=51.64 Aligned_cols=22 Identities=32% Similarity=0.652 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHHcc
Q 036584 228 VISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
++.|.|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999873
No 499
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.31 E-value=0.14 Score=60.25 Aligned_cols=75 Identities=12% Similarity=0.172 Sum_probs=51.2
Q ss_pred CCCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccC-CCCEEEEEEeCCCCCHHHHHHHHHHH
Q 036584 202 EENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKN-KFDYCAWVSVSQDYKIKDLLLRIIKS 280 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~il~~ 280 (919)
-++++|.++.++.+...+.... -+.++|++|+||||+|+.+.+ .+.. .|..++++.-+ ..+...+++.+..+
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~~----~~ll~G~pG~GKT~la~~la~--~l~~~~~~~~~~~~n~-~~~~~~~~~~v~~~ 89 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQKR----NVLLIGEPGVGKSMLAKAMAE--LLPDEELEDILVYPNP-EDPNMPRIVEVPAG 89 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcCC----CEEEECCCCCCHHHHHHHHHH--HcCchhheeEEEEeCC-CCCchHHHHHHHHh
Confidence 3568899888877777776542 556999999999999999997 3333 34434444333 23455667777777
Q ss_pred hcc
Q 036584 281 FNI 283 (919)
Q Consensus 281 l~~ 283 (919)
++.
T Consensus 90 ~g~ 92 (608)
T TIGR00764 90 EGR 92 (608)
T ss_pred hch
Confidence 665
No 500
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=93.31 E-value=0.82 Score=49.23 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
-.+++|.|+.|.|||||.+.++.-
T Consensus 33 Gei~gllGpNGaGKSTLl~~l~Gl 56 (306)
T PRK13537 33 GECFGLLGPNGAGKTTTLRMLLGL 56 (306)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999863
Done!