Query 036584
Match_columns 919
No_of_seqs 444 out of 4140
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 05:05:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036584.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036584hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.1E-48 7.3E-53 453.9 27.6 319 206-542 131-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 3.9E-38 1.3E-42 408.0 29.0 320 197-540 118-452 (1249)
3 1vt4_I APAF-1 related killer D 100.0 1.1E-38 3.7E-43 373.3 18.4 289 203-533 128-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 2.8E-35 9.6E-40 349.0 28.5 311 200-537 121-449 (591)
5 4eco_A Uncharacterized protein 99.9 1.7E-23 5.8E-28 249.1 16.1 297 603-916 198-577 (636)
6 3vq2_A TLR4, TOLL-like recepto 99.9 7.8E-23 2.7E-27 243.4 19.4 157 755-916 370-532 (606)
7 1o6v_A Internalin A; bacterial 99.9 1.5E-22 5.3E-27 232.2 20.7 319 559-916 46-386 (466)
8 4ecn_A Leucine-rich repeat pro 99.9 7.9E-23 2.7E-27 247.3 18.3 298 603-917 440-818 (876)
9 3o6n_A APL1; leucine-rich repe 99.9 1.5E-22 5.1E-27 226.9 17.4 298 580-916 44-350 (390)
10 4fmz_A Internalin; leucine ric 99.9 3.3E-22 1.1E-26 220.4 18.2 295 580-916 43-344 (347)
11 3rgz_A Protein brassinosteroid 99.9 1.8E-22 6.3E-27 246.0 17.7 264 558-845 268-550 (768)
12 4ecn_A Leucine-rich repeat pro 99.9 2.5E-22 8.6E-27 242.9 16.6 333 557-917 446-839 (876)
13 3oja_B Anopheles plasmodium-re 99.9 2.9E-22 1E-26 237.1 16.6 298 580-916 50-356 (597)
14 1o6v_A Internalin A; bacterial 99.9 1E-21 3.4E-26 225.4 19.9 296 580-916 45-364 (466)
15 3rgz_A Protein brassinosteroid 99.9 3E-22 1E-26 244.1 15.9 330 559-915 294-714 (768)
16 4eco_A Uncharacterized protein 99.9 2.2E-22 7.6E-27 239.5 14.2 330 557-917 204-599 (636)
17 2z63_A TOLL-like receptor 4, v 99.9 9.4E-22 3.2E-26 232.4 18.5 156 755-916 367-529 (570)
18 4fmz_A Internalin; leucine ric 99.9 1.5E-21 5E-26 215.2 17.9 299 557-893 42-344 (347)
19 2z7x_B TOLL-like receptor 1, v 99.9 9.2E-22 3.1E-26 229.5 16.7 326 558-916 20-479 (520)
20 2id5_A Lingo-1, leucine rich r 99.9 4.3E-21 1.5E-25 221.2 22.0 291 580-915 31-330 (477)
21 3v47_A TOLL-like receptor 5B a 99.9 1.6E-21 5.6E-26 223.4 16.5 336 557-916 28-406 (455)
22 3t6q_A CD180 antigen; protein- 99.9 2.2E-21 7.6E-26 230.9 17.7 336 557-916 31-436 (606)
23 3vq2_A TLR4, TOLL-like recepto 99.9 1.6E-21 5.6E-26 232.0 15.7 158 755-916 393-556 (606)
24 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.7E-21 1.3E-25 226.4 18.0 116 562-696 34-151 (562)
25 3t6q_A CD180 antigen; protein- 99.9 7.3E-21 2.5E-25 226.4 20.5 261 644-914 255-532 (606)
26 3j0a_A TOLL-like receptor 5; m 99.8 2.6E-20 9E-25 229.4 22.0 334 557-916 22-437 (844)
27 2z81_A CD282 antigen, TOLL-lik 99.8 8.7E-21 3E-25 222.9 15.0 171 557-743 24-207 (549)
28 3bz5_A Internalin-J, INLJ; leu 99.8 4.7E-20 1.6E-24 209.8 20.2 269 607-915 60-349 (457)
29 3o6n_A APL1; leucine-rich repe 99.8 2.2E-20 7.4E-25 209.2 16.1 276 609-917 43-330 (390)
30 2z81_A CD282 antigen, TOLL-lik 99.8 2.9E-20 1E-24 218.4 16.9 314 580-916 25-421 (549)
31 1ziw_A TOLL-like receptor 3; i 99.8 2E-19 6.8E-24 217.0 20.5 331 557-915 23-464 (680)
32 3j0a_A TOLL-like receptor 5; m 99.8 1.3E-19 4.3E-24 223.3 19.1 316 569-915 14-391 (844)
33 3oja_B Anopheles plasmodium-re 99.8 7.3E-20 2.5E-24 216.6 15.6 276 609-917 49-336 (597)
34 2id5_A Lingo-1, leucine rich r 99.8 2E-19 6.8E-24 207.2 18.2 289 557-890 30-329 (477)
35 2z7x_B TOLL-like receptor 1, v 99.8 1.4E-19 4.6E-24 211.1 16.5 331 562-916 3-455 (520)
36 1xku_A Decorin; proteoglycan, 99.8 2.9E-19 9.9E-24 195.2 17.6 284 581-916 31-330 (330)
37 2z63_A TOLL-like receptor 4, v 99.8 4.1E-19 1.4E-23 209.7 20.1 333 557-916 26-456 (570)
38 3bz5_A Internalin-J, INLJ; leu 99.8 4.7E-19 1.6E-23 201.5 19.0 272 605-916 36-329 (457)
39 4fcg_A Uncharacterized protein 99.8 4.2E-19 1.4E-23 193.1 17.5 230 609-915 79-311 (328)
40 1ziw_A TOLL-like receptor 3; i 99.8 5.9E-19 2E-23 212.9 20.4 269 638-916 324-620 (680)
41 3v47_A TOLL-like receptor 5B a 99.8 3.6E-19 1.2E-23 203.9 17.3 316 579-916 28-382 (455)
42 2ft3_A Biglycan; proteoglycan, 99.8 3.7E-19 1.3E-23 194.5 14.2 283 581-916 33-331 (332)
43 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 7.1E-19 2.4E-23 206.9 16.1 329 557-916 50-508 (562)
44 4fcg_A Uncharacterized protein 99.8 1.9E-18 6.4E-23 188.0 16.7 227 580-841 80-309 (328)
45 4g8a_A TOLL-like receptor 4; l 99.8 6.9E-18 2.4E-22 201.9 21.4 123 557-696 50-178 (635)
46 1ogq_A PGIP-2, polygalacturona 99.8 1E-18 3.4E-23 189.0 10.4 242 581-868 50-301 (313)
47 3qfl_A MLA10; coiled-coil, (CC 99.7 3.6E-19 1.2E-23 158.2 4.0 82 4-85 1-84 (115)
48 1xku_A Decorin; proteoglycan, 99.7 1.1E-17 3.8E-22 182.5 16.0 280 560-890 32-328 (330)
49 2ft3_A Biglycan; proteoglycan, 99.7 9E-18 3.1E-22 183.4 14.9 279 560-890 34-329 (332)
50 1ogq_A PGIP-2, polygalacturona 99.7 4.3E-18 1.5E-22 184.0 12.0 246 611-896 50-305 (313)
51 1jl5_A Outer protein YOPM; leu 99.7 2.2E-17 7.6E-22 187.6 17.6 299 557-916 89-407 (454)
52 3g06_A SSPH2 (leucine-rich rep 99.7 4.3E-17 1.5E-21 190.9 18.1 249 613-916 42-295 (622)
53 1jl5_A Outer protein YOPM; leu 99.7 3.6E-17 1.2E-21 185.8 13.3 125 602-742 25-163 (454)
54 2z80_A TOLL-like receptor 2, v 99.7 7E-17 2.4E-21 177.9 14.8 244 580-845 51-313 (353)
55 4g8a_A TOLL-like receptor 4; l 99.7 1.3E-16 4.5E-21 190.8 18.4 336 557-916 74-578 (635)
56 3ogk_B Coronatine-insensitive 99.7 2.9E-18 9.8E-23 203.4 2.9 315 583-916 140-524 (592)
57 2z80_A TOLL-like receptor 2, v 99.7 9.1E-17 3.1E-21 177.0 13.8 245 611-890 52-310 (353)
58 2qen_A Walker-type ATPase; unk 99.7 2.1E-15 7.1E-20 166.0 24.6 299 200-534 9-349 (350)
59 1z7x_W Ribonuclease inhibitor; 99.7 5.2E-19 1.8E-23 202.9 -4.9 342 559-916 3-409 (461)
60 3o53_A Protein LRIM1, AGAP0063 99.7 2.1E-18 7.3E-23 186.9 -0.2 244 604-896 27-276 (317)
61 3o53_A Protein LRIM1, AGAP0063 99.7 9.9E-18 3.4E-22 181.6 4.3 253 611-913 10-270 (317)
62 1w5s_A Origin recognition comp 99.7 5.9E-16 2E-20 174.6 18.5 298 201-514 20-372 (412)
63 2z66_A Variable lymphocyte rec 99.7 1.8E-16 6E-21 171.0 12.2 65 606-676 47-111 (306)
64 3zyi_A Leucine-rich repeat-con 99.7 4.3E-16 1.5E-20 177.7 15.7 147 580-742 74-228 (452)
65 3zyi_A Leucine-rich repeat-con 99.7 2.8E-16 9.7E-21 179.3 13.4 218 611-866 75-298 (452)
66 3zyj_A Leucine-rich repeat-con 99.7 6.5E-16 2.2E-20 175.6 16.2 163 563-742 47-217 (440)
67 3g06_A SSPH2 (leucine-rich rep 99.7 3.8E-16 1.3E-20 182.9 14.1 252 560-890 41-293 (622)
68 3oja_A Leucine-rich immune mol 99.7 7.5E-17 2.6E-21 185.1 7.8 73 609-696 32-104 (487)
69 2fna_A Conserved hypothetical 99.6 6.6E-15 2.3E-19 162.4 22.9 293 201-533 11-356 (357)
70 3zyj_A Leucine-rich repeat-con 99.6 4.9E-16 1.7E-20 176.6 13.4 211 611-843 64-289 (440)
71 2z66_A Variable lymphocyte rec 99.6 8.3E-16 2.8E-20 165.7 11.1 221 611-871 28-261 (306)
72 3oja_A Leucine-rich immune mol 99.6 1.4E-15 4.7E-20 174.6 13.5 239 634-913 21-270 (487)
73 1wwl_A Monocyte differentiatio 99.6 8.7E-16 3E-20 165.9 8.5 194 641-846 93-309 (312)
74 1ozn_A Reticulon 4 receptor; N 99.6 6.3E-15 2.2E-19 157.0 14.9 198 610-845 31-237 (285)
75 1h6u_A Internalin H; cell adhe 99.6 7E-15 2.4E-19 158.3 15.3 193 608-847 38-231 (308)
76 1z7x_W Ribonuclease inhibitor; 99.6 5.1E-17 1.7E-21 186.3 -3.5 322 580-917 2-382 (461)
77 3ogk_B Coronatine-insensitive 99.6 1.1E-15 3.8E-20 181.1 7.7 314 580-913 191-546 (592)
78 2p1m_B Transport inhibitor res 99.6 2.5E-16 8.5E-21 186.8 1.9 340 559-917 105-518 (594)
79 1wwl_A Monocyte differentiatio 99.6 6.6E-16 2.3E-20 166.8 3.0 173 729-916 118-307 (312)
80 1ozn_A Reticulon 4 receptor; N 99.5 1E-14 3.4E-19 155.4 9.7 216 563-824 15-240 (285)
81 1p9a_G Platelet glycoprotein I 99.5 3.3E-14 1.1E-18 151.4 12.9 126 759-890 75-204 (290)
82 1h6u_A Internalin H; cell adhe 99.5 4.9E-14 1.7E-18 151.6 13.9 197 638-874 36-233 (308)
83 2z62_A TOLL-like receptor 4, v 99.5 2.7E-14 9.1E-19 151.3 10.9 178 638-845 47-236 (276)
84 2o6q_A Variable lymphocyte rec 99.5 8.9E-14 3.1E-18 146.7 14.7 192 613-845 18-217 (270)
85 2qby_B CDC6 homolog 3, cell di 99.5 3.9E-13 1.3E-17 149.8 20.4 294 203-514 20-340 (384)
86 3rfs_A Internalin B, repeat mo 99.5 5.9E-14 2E-18 148.2 11.6 104 755-870 127-234 (272)
87 2v1u_A Cell division control p 99.5 7E-13 2.4E-17 147.9 21.0 296 201-514 17-352 (387)
88 2z62_A TOLL-like receptor 4, v 99.5 1.8E-13 6.1E-18 145.0 13.1 202 634-890 21-233 (276)
89 1fnn_A CDC6P, cell division co 99.5 4.3E-12 1.5E-16 141.6 24.6 319 202-540 16-387 (389)
90 2p1m_B Transport inhibitor res 99.5 4.4E-15 1.5E-19 176.1 -0.5 272 608-894 208-518 (594)
91 2ast_B S-phase kinase-associat 99.5 4E-15 1.4E-19 162.7 -1.0 110 787-902 196-314 (336)
92 1p9a_G Platelet glycoprotein I 99.4 4.3E-13 1.5E-17 142.7 14.0 61 783-844 145-206 (290)
93 2ca6_A RAN GTPase-activating p 99.4 2.4E-15 8.3E-20 167.8 -3.9 241 602-871 23-316 (386)
94 4glp_A Monocyte differentiatio 99.4 2.2E-13 7.7E-18 146.8 11.2 198 610-846 90-307 (310)
95 2xwt_C Thyrotropin receptor; s 99.4 1.3E-13 4.5E-18 142.5 8.8 33 644-676 32-65 (239)
96 2qby_A CDC6 homolog 1, cell di 99.4 1.2E-12 4.1E-17 145.9 16.8 294 201-514 18-349 (386)
97 3rfs_A Internalin B, repeat mo 99.4 2.3E-13 7.7E-18 143.7 9.7 86 580-685 40-126 (272)
98 1h6t_A Internalin B; cell adhe 99.4 3.9E-13 1.3E-17 143.2 11.1 63 608-683 43-105 (291)
99 2ca6_A RAN GTPase-activating p 99.4 2.1E-14 7.3E-19 160.1 1.3 270 580-866 31-338 (386)
100 1m9s_A Internalin B; cell inva 99.4 2.5E-13 8.6E-18 158.8 10.0 172 608-824 40-212 (605)
101 4ay9_X Follicle-stimulating ho 99.4 6.7E-13 2.3E-17 145.6 12.3 236 614-890 12-255 (350)
102 2ast_B S-phase kinase-associat 99.4 1.2E-13 3.9E-18 151.1 6.1 82 581-676 70-152 (336)
103 2xwt_C Thyrotropin receptor; s 99.4 1.3E-12 4.3E-17 135.1 13.2 126 757-890 101-235 (239)
104 4ay9_X Follicle-stimulating ho 99.4 1.4E-12 4.8E-17 143.1 14.2 241 638-914 5-255 (350)
105 2o6q_A Variable lymphocyte rec 99.4 2.2E-12 7.4E-17 136.0 15.0 198 639-870 11-217 (270)
106 1h6t_A Internalin B; cell adhe 99.4 3.5E-12 1.2E-16 135.8 14.1 172 638-846 41-213 (291)
107 4glp_A Monocyte differentiatio 99.4 6.7E-13 2.3E-17 143.0 7.8 36 641-676 89-127 (310)
108 3goz_A Leucine-rich repeat-con 99.3 1.9E-13 6.4E-18 150.9 2.9 159 728-890 104-293 (362)
109 1m9s_A Internalin B; cell inva 99.3 4.8E-12 1.6E-16 148.0 11.8 173 638-847 38-211 (605)
110 3cvr_A Invasion plasmid antige 99.3 3.3E-12 1.1E-16 147.6 9.0 182 612-831 60-252 (571)
111 3m19_A Variable lymphocyte rec 99.3 2E-11 6.9E-16 127.0 14.1 173 611-845 14-191 (251)
112 3goz_A Leucine-rich repeat-con 99.3 1.2E-12 4E-17 144.5 4.0 241 602-872 13-298 (362)
113 1njg_A DNA polymerase III subu 99.2 1.2E-10 4E-15 120.7 15.6 201 202-413 22-231 (250)
114 3m19_A Variable lymphocyte rec 99.2 5.3E-11 1.8E-15 123.8 13.0 176 581-824 14-194 (251)
115 4ezg_A Putative uncharacterize 99.2 1.6E-11 5.4E-16 122.6 8.0 149 759-916 42-192 (197)
116 1dce_A Protein (RAB geranylger 99.2 1.4E-13 4.9E-18 159.9 -8.4 37 640-676 346-382 (567)
117 4ezg_A Putative uncharacterize 99.2 6E-11 2E-15 118.3 11.6 40 803-845 154-193 (197)
118 1xeu_A Internalin C; cellular 99.2 2.7E-11 9.2E-16 126.8 8.0 59 607-676 37-95 (263)
119 1xeu_A Internalin C; cellular 99.1 4.1E-11 1.4E-15 125.4 8.0 168 609-846 17-185 (263)
120 2o6s_A Variable lymphocyte rec 99.1 1E-10 3.5E-15 117.8 9.8 70 756-834 119-190 (208)
121 3e6j_A Variable lymphocyte rec 99.1 2.6E-10 8.8E-15 116.6 12.8 60 785-845 111-171 (229)
122 1dce_A Protein (RAB geranylger 99.1 1.1E-12 3.7E-17 152.5 -5.8 215 608-865 346-567 (567)
123 3cvr_A Invasion plasmid antige 99.1 2E-10 6.8E-15 132.8 12.8 174 643-846 59-243 (571)
124 2chg_A Replication factor C sm 99.1 3.4E-10 1.2E-14 115.2 12.5 180 202-411 16-205 (226)
125 2v9t_B SLIT homolog 2 protein 99.1 4.5E-10 1.5E-14 114.0 11.9 52 614-676 14-66 (220)
126 2xot_A Amphoterin-induced prot 99.0 4.1E-10 1.4E-14 123.9 11.0 58 614-684 21-80 (361)
127 2v70_A SLIT-2, SLIT homolog 2 99.0 5.7E-10 2E-14 113.2 11.0 58 614-684 14-73 (220)
128 2o6s_A Variable lymphocyte rec 99.0 6.9E-10 2.3E-14 111.7 10.8 104 756-871 71-178 (208)
129 2ell_A Acidic leucine-rich nuc 99.0 6.7E-10 2.3E-14 107.5 8.4 100 580-696 23-125 (168)
130 3e6j_A Variable lymphocyte rec 99.0 1.6E-09 5.5E-14 110.7 10.3 101 580-697 39-141 (229)
131 2v9t_B SLIT homolog 2 protein 99.0 1.8E-09 6.2E-14 109.5 10.4 101 580-696 31-133 (220)
132 2je0_A Acidic leucine-rich nuc 98.9 4.7E-10 1.6E-14 106.2 5.5 99 581-696 17-118 (149)
133 2v70_A SLIT-2, SLIT homolog 2 98.9 3E-09 1E-13 107.8 11.0 116 563-696 15-134 (220)
134 4b8c_D Glucose-repressible alc 98.9 1.4E-09 4.9E-14 130.5 8.7 151 558-721 172-327 (727)
135 1sxj_B Activator 1 37 kDa subu 98.9 5.4E-09 1.8E-13 113.1 12.3 185 203-411 21-211 (323)
136 2ell_A Acidic leucine-rich nuc 98.9 4.6E-09 1.6E-13 101.5 9.1 123 557-697 22-153 (168)
137 2je0_A Acidic leucine-rich nuc 98.8 2.8E-09 9.6E-14 100.8 6.6 123 557-697 15-146 (149)
138 1hqc_A RUVB; extended AAA-ATPa 98.8 6.7E-09 2.3E-13 112.4 10.2 263 202-512 11-324 (324)
139 1a9n_A U2A', U2A'; complex (nu 98.8 3.3E-09 1.1E-13 103.4 6.3 98 580-696 18-118 (176)
140 3sb4_A Hypothetical leucine ri 98.8 1.5E-08 5E-13 109.9 10.8 219 642-886 100-326 (329)
141 2xot_A Amphoterin-induced prot 98.8 8E-09 2.7E-13 113.5 7.9 163 563-743 22-200 (361)
142 1ds9_A Outer arm dynein; leuci 98.8 4.8E-10 1.7E-14 111.8 -2.1 133 602-767 39-180 (198)
143 1a9n_A U2A', U2A'; complex (nu 98.7 1E-08 3.5E-13 99.9 6.8 122 557-697 17-146 (176)
144 4b8c_D Glucose-repressible alc 98.7 1.7E-09 5.8E-14 129.8 1.3 108 634-743 215-327 (727)
145 1iqp_A RFCS; clamp loader, ext 98.7 2.1E-08 7.2E-13 108.6 9.3 185 202-413 24-215 (327)
146 3te6_A Regulatory protein SIR3 98.7 1.7E-07 5.9E-12 98.8 14.0 170 204-379 21-212 (318)
147 1w8a_A SLIT protein; signaling 98.7 3E-08 1E-12 98.1 7.4 63 612-685 30-95 (192)
148 1ds9_A Outer arm dynein; leuci 98.7 7.4E-10 2.5E-14 110.4 -4.3 130 634-792 39-180 (198)
149 2wfh_A SLIT homolog 2 protein 98.6 6.6E-08 2.3E-12 95.6 9.5 75 611-696 31-107 (193)
150 1w8a_A SLIT protein; signaling 98.6 3.8E-08 1.3E-12 97.3 7.5 118 562-696 11-131 (192)
151 2wfh_A SLIT homolog 2 protein 98.6 7.2E-08 2.5E-12 95.3 8.8 115 563-696 14-131 (193)
152 3sb4_A Hypothetical leucine ri 98.6 4.2E-08 1.4E-12 106.2 7.8 122 785-912 201-328 (329)
153 1jr3_A DNA polymerase III subu 98.6 3.9E-07 1.3E-11 100.6 14.3 199 203-411 16-222 (373)
154 2o6r_A Variable lymphocyte rec 98.5 1.3E-07 4.4E-12 92.1 8.4 100 580-696 27-129 (177)
155 2r9u_A Variable lymphocyte rec 98.5 1.3E-07 4.4E-12 91.7 7.7 89 580-685 32-122 (174)
156 1jbk_A CLPB protein; beta barr 98.5 6.2E-08 2.1E-12 95.7 5.6 46 202-249 21-66 (195)
157 4fdw_A Leucine rich hypothetic 98.5 1.5E-06 5E-11 96.3 16.1 225 602-873 127-360 (401)
158 2chq_A Replication factor C sm 98.5 3E-07 1E-11 99.0 10.0 182 203-411 17-205 (319)
159 3pfi_A Holliday junction ATP-d 98.5 3.9E-06 1.3E-10 91.0 18.6 175 202-410 28-227 (338)
160 4fdw_A Leucine rich hypothetic 98.4 3.7E-06 1.3E-10 93.0 17.4 216 581-844 135-356 (401)
161 2ra8_A Uncharacterized protein 98.4 1.2E-07 4E-12 103.2 5.0 129 783-916 169-318 (362)
162 2o6r_A Variable lymphocyte rec 98.4 3.3E-07 1.1E-11 89.1 7.5 105 784-890 26-133 (177)
163 3h4m_A Proteasome-activating n 98.4 2.3E-06 7.9E-11 90.3 14.6 178 202-407 16-228 (285)
164 3g39_A Variable lymphocyte rec 98.4 3.5E-07 1.2E-11 88.3 7.4 82 580-676 29-112 (170)
165 1d2n_A N-ethylmaleimide-sensit 98.4 7.4E-06 2.5E-10 85.7 17.1 197 203-429 33-262 (272)
166 3bos_A Putative DNA replicatio 98.4 5.4E-07 1.8E-11 92.5 8.1 173 203-411 28-218 (242)
167 3g39_A Variable lymphocyte rec 98.4 5E-07 1.7E-11 87.2 7.4 70 614-696 12-83 (170)
168 2r9u_A Variable lymphocyte rec 98.4 5.8E-07 2E-11 87.0 7.7 40 637-676 51-91 (174)
169 2qz4_A Paraplegin; AAA+, SPG7, 98.3 9.9E-06 3.4E-10 84.2 17.4 182 203-409 6-221 (262)
170 3uk6_A RUVB-like 2; hexameric 98.3 2.4E-06 8.3E-11 93.9 12.8 202 202-409 43-302 (368)
171 3syl_A Protein CBBX; photosynt 98.3 1.2E-06 4E-11 93.8 9.7 154 204-380 32-219 (309)
172 1sxj_D Activator 1 41 kDa subu 98.3 2.7E-06 9.3E-11 92.9 12.1 195 202-410 36-235 (353)
173 3pvs_A Replication-associated 98.2 5.2E-06 1.8E-10 92.7 13.1 177 202-410 25-215 (447)
174 1xwi_A SKD1 protein; VPS4B, AA 98.2 8.6E-05 3E-09 79.4 21.0 182 203-410 12-223 (322)
175 3u61_B DNA polymerase accessor 98.2 1.4E-05 4.8E-10 86.0 14.8 179 202-408 25-214 (324)
176 1sxj_E Activator 1 40 kDa subu 98.2 8.3E-06 2.8E-10 89.0 13.1 195 203-411 14-238 (354)
177 3d8b_A Fidgetin-like protein 1 98.2 2.4E-05 8.3E-10 85.1 16.7 183 202-411 83-296 (357)
178 2z4s_A Chromosomal replication 98.2 4.7E-06 1.6E-10 93.3 10.9 180 204-408 106-304 (440)
179 3eie_A Vacuolar protein sortin 98.2 2.5E-05 8.6E-10 83.8 15.7 177 203-409 18-227 (322)
180 1sxj_A Activator 1 95 kDa subu 98.2 8.1E-06 2.8E-10 93.6 12.4 190 202-410 38-253 (516)
181 1a5t_A Delta prime, HOLB; zinc 98.1 2.4E-05 8.1E-10 84.4 15.0 182 212-409 11-204 (334)
182 3vfd_A Spastin; ATPase, microt 98.1 5E-05 1.7E-09 83.8 17.6 181 202-409 114-325 (389)
183 2qp9_X Vacuolar protein sortin 98.1 5.1E-05 1.8E-09 82.4 17.1 177 203-409 51-260 (355)
184 3b9p_A CG5977-PA, isoform A; A 98.1 0.00012 4.2E-09 77.5 18.7 177 203-409 21-232 (297)
185 1l8q_A Chromosomal replication 98.0 3.7E-05 1.3E-09 82.6 14.1 166 214-406 25-204 (324)
186 3un9_A NLR family member X1; l 98.0 5.7E-07 2E-11 98.6 -1.7 34 643-676 101-136 (372)
187 3n70_A Transport activator; si 98.0 7.7E-06 2.6E-10 76.4 6.2 111 204-346 2-115 (145)
188 3cf0_A Transitional endoplasmi 98.0 0.00016 5.6E-09 76.5 17.0 175 203-405 15-223 (301)
189 2zan_A Vacuolar protein sortin 97.9 0.00013 4.3E-09 81.8 16.6 181 203-409 134-344 (444)
190 2ra8_A Uncharacterized protein 97.9 6.3E-06 2.2E-10 89.5 5.6 43 634-676 130-182 (362)
191 4b4t_L 26S protease subunit RP 97.9 0.0001 3.5E-09 81.0 15.2 173 202-403 180-387 (437)
192 4b4t_J 26S protease regulatory 97.9 7.9E-05 2.7E-09 80.5 13.4 172 203-403 148-354 (405)
193 4fs7_A Uncharacterized protein 97.9 0.00011 3.8E-09 81.3 14.9 143 756-910 248-393 (394)
194 1sxj_C Activator 1 40 kDa subu 97.9 6E-05 2E-09 81.6 12.2 175 203-407 25-209 (340)
195 2p65_A Hypothetical protein PF 97.9 7.6E-06 2.6E-10 80.0 4.1 46 202-249 21-66 (187)
196 4b4t_M 26S protease regulatory 97.8 0.00012 3.9E-09 80.5 13.7 173 202-403 180-387 (434)
197 1lv7_A FTSH; alpha/beta domain 97.8 0.00022 7.6E-09 73.6 15.0 178 203-407 12-222 (257)
198 3e4g_A ATP synthase subunit S, 97.8 4.8E-06 1.6E-10 79.3 2.0 87 809-896 61-153 (176)
199 2ifg_A High affinity nerve gro 97.8 1.3E-05 4.3E-10 87.3 5.5 71 607-687 27-99 (347)
200 4fs7_A Uncharacterized protein 97.8 0.0002 6.8E-09 79.3 15.2 286 602-915 62-376 (394)
201 4b4t_K 26S protease regulatory 97.8 8.1E-05 2.8E-09 81.7 11.6 174 201-403 170-379 (428)
202 4b4t_H 26S protease regulatory 97.8 0.00028 9.7E-09 77.2 15.0 172 203-403 209-415 (467)
203 4b4t_I 26S protease regulatory 97.7 0.00027 9.1E-09 76.6 14.2 172 203-403 182-388 (437)
204 1in4_A RUVB, holliday junction 97.7 0.001 3.4E-08 71.5 18.9 173 203-409 25-222 (334)
205 2ifg_A High affinity nerve gro 97.7 3.5E-05 1.2E-09 83.7 7.5 91 571-676 21-113 (347)
206 3un9_A NLR family member X1; l 97.7 2.4E-05 8.1E-10 85.6 5.9 58 611-676 101-165 (372)
207 2gno_A DNA polymerase III, gam 97.7 0.00018 6E-09 76.0 12.3 146 207-378 1-152 (305)
208 3pxg_A Negative regulator of g 97.7 3.5E-05 1.2E-09 87.0 7.2 148 203-378 180-338 (468)
209 3hu3_A Transitional endoplasmi 97.7 0.00019 6.5E-09 80.9 13.1 173 203-402 204-406 (489)
210 1ofh_A ATP-dependent HSL prote 97.7 0.00018 6.1E-09 76.6 12.1 47 203-249 15-73 (310)
211 2ce7_A Cell division protein F 97.7 0.00029 9.8E-09 78.8 13.2 174 203-403 16-221 (476)
212 2bjv_A PSP operon transcriptio 97.7 0.00028 9.5E-09 73.3 12.5 62 203-266 6-67 (265)
213 3co5_A Putative two-component 97.6 3E-05 1E-09 72.1 4.0 46 204-249 5-50 (143)
214 1qvr_A CLPB protein; coiled co 97.6 9.7E-05 3.3E-09 90.2 9.4 155 201-377 168-344 (854)
215 3ec2_A DNA replication protein 97.6 5E-05 1.7E-09 73.8 5.1 99 226-345 38-141 (180)
216 4fcw_A Chaperone protein CLPB; 97.6 0.00021 7.3E-09 76.1 10.1 62 203-266 17-85 (311)
217 2c9o_A RUVB-like 1; hexameric 97.5 0.00043 1.5E-08 77.9 13.0 96 311-409 297-409 (456)
218 2r62_A Cell division protease 97.5 5.8E-05 2E-09 78.7 4.4 48 202-249 10-67 (268)
219 1ojl_A Transcriptional regulat 97.4 0.00021 7.3E-09 75.6 7.8 47 203-249 2-48 (304)
220 3cf2_A TER ATPase, transitiona 97.4 0.00095 3.2E-08 79.0 13.7 176 203-405 204-409 (806)
221 2w58_A DNAI, primosome compone 97.4 0.00021 7.2E-09 70.7 6.9 52 212-265 38-91 (202)
222 1r6b_X CLPA protein; AAA+, N-t 97.4 0.0011 3.8E-08 80.0 14.0 156 202-378 185-362 (758)
223 3rw6_A Nuclear RNA export fact 97.3 0.00016 5.4E-09 74.3 5.5 83 606-697 165-257 (267)
224 3pxi_A Negative regulator of g 97.3 0.0007 2.4E-08 81.6 11.5 151 202-378 179-338 (758)
225 3t15_A Ribulose bisphosphate c 97.2 0.0011 3.7E-08 69.7 10.1 24 226-249 36-59 (293)
226 3pxi_A Negative regulator of g 97.2 0.0007 2.4E-08 81.6 9.3 149 203-377 491-674 (758)
227 2x8a_A Nuclear valosin-contain 97.1 0.003 1E-07 65.6 12.5 151 203-378 10-191 (274)
228 2dhr_A FTSH; AAA+ protein, hex 97.1 0.003 1E-07 71.0 13.0 171 202-403 30-236 (499)
229 1io0_A Tropomodulin; LRR prote 97.0 0.0002 6.9E-09 69.7 2.4 117 602-743 27-162 (185)
230 3e4g_A ATP synthase subunit S, 97.0 0.00043 1.5E-08 65.8 4.5 84 787-872 62-154 (176)
231 1ixz_A ATP-dependent metallopr 97.0 0.0023 7.8E-08 65.8 10.3 173 203-403 16-221 (254)
232 2r44_A Uncharacterized protein 97.0 0.0022 7.6E-08 68.8 10.1 151 203-380 27-200 (331)
233 1ypw_A Transitional endoplasmi 96.9 0.003 1E-07 76.0 11.8 173 203-403 204-407 (806)
234 1io0_A Tropomodulin; LRR prote 96.9 0.00031 1.1E-08 68.4 2.4 89 580-676 35-133 (185)
235 4gt6_A Cell surface protein; l 96.9 0.011 3.7E-07 65.1 15.3 282 582-890 65-366 (394)
236 4h09_A Hypothetical leucine ri 96.8 0.027 9.2E-07 61.5 17.9 78 580-676 45-123 (379)
237 2kjq_A DNAA-related protein; s 96.8 0.0012 4.2E-08 61.4 5.9 38 226-265 36-73 (149)
238 1iy2_A ATP-dependent metallopr 96.8 0.0067 2.3E-07 63.2 12.2 173 203-403 40-245 (278)
239 1um8_A ATP-dependent CLP prote 96.8 0.0042 1.4E-07 67.9 10.6 24 226-249 72-95 (376)
240 2cvh_A DNA repair and recombin 96.8 0.0046 1.6E-07 61.8 9.9 89 225-319 19-115 (220)
241 4gt6_A Cell surface protein; l 96.7 0.0099 3.4E-07 65.4 13.3 259 580-867 86-366 (394)
242 2vhj_A Ntpase P4, P4; non- hyd 96.7 0.0014 4.8E-08 68.2 5.4 69 226-320 123-193 (331)
243 3m6a_A ATP-dependent protease 96.6 0.0039 1.3E-07 71.5 8.9 46 204-249 82-131 (543)
244 1r6b_X CLPA protein; AAA+, N-t 96.6 0.011 3.6E-07 71.3 12.9 47 203-249 458-511 (758)
245 3hr8_A Protein RECA; alpha and 96.6 0.006 2.1E-07 65.2 9.5 100 213-319 47-149 (356)
246 1n0w_A DNA repair protein RAD5 96.4 0.0091 3.1E-07 60.6 9.3 105 214-319 12-129 (243)
247 3rw6_A Nuclear RNA export fact 96.4 0.0028 9.7E-08 64.9 5.2 81 580-674 169-259 (267)
248 3io5_A Recombination and repai 96.3 0.016 5.4E-07 60.1 10.4 87 228-319 30-121 (333)
249 4h09_A Hypothetical leucine ri 96.3 0.058 2E-06 58.8 15.9 273 559-866 46-341 (379)
250 1jr3_D DNA polymerase III, del 96.3 0.056 1.9E-06 58.0 15.3 166 214-409 8-184 (343)
251 2w0m_A SSO2452; RECA, SSPF, un 96.2 0.0096 3.3E-07 60.0 8.4 117 226-347 23-168 (235)
252 1qvr_A CLPB protein; coiled co 96.2 0.0096 3.3E-07 72.5 9.7 47 203-249 558-611 (854)
253 2zr9_A Protein RECA, recombina 96.2 0.035 1.2E-06 59.5 12.9 101 212-319 46-149 (349)
254 1v5w_A DMC1, meiotic recombina 96.2 0.026 8.9E-07 60.5 12.0 69 213-282 109-181 (343)
255 2z43_A DNA repair and recombin 96.2 0.012 4.1E-07 62.7 9.1 106 213-319 94-213 (324)
256 2i1q_A DNA repair and recombin 96.0 0.014 4.8E-07 62.1 8.9 107 212-319 84-214 (322)
257 2b8t_A Thymidine kinase; deoxy 96.0 0.0024 8.2E-08 63.5 2.5 113 225-347 11-126 (223)
258 1g5t_A COB(I)alamin adenosyltr 96.0 0.0068 2.3E-07 58.4 5.4 117 227-347 29-163 (196)
259 2qgz_A Helicase loader, putati 96.0 0.0039 1.3E-07 65.9 4.0 54 211-265 136-190 (308)
260 1xp8_A RECA protein, recombina 95.9 0.018 6.2E-07 62.0 8.8 101 212-319 59-162 (366)
261 1u94_A RECA protein, recombina 95.8 0.021 7.3E-07 61.2 8.8 101 212-319 48-151 (356)
262 3bh0_A DNAB-like replicative h 95.8 0.056 1.9E-06 57.1 12.0 64 213-281 56-119 (315)
263 2ehv_A Hypothetical protein PH 95.7 0.013 4.4E-07 59.8 6.4 23 226-248 30-52 (251)
264 2pze_A Cystic fibrosis transme 95.4 0.25 8.4E-06 49.4 14.7 23 226-248 34-56 (229)
265 3lda_A DNA repair protein RAD5 95.4 0.04 1.4E-06 60.0 9.4 70 212-282 164-237 (400)
266 1u0j_A DNA replication protein 95.4 0.062 2.1E-06 54.5 10.0 36 214-249 92-127 (267)
267 2cbz_A Multidrug resistance-as 95.2 0.15 5.1E-06 51.3 12.4 23 226-248 31-53 (237)
268 1vpl_A ABC transporter, ATP-bi 95.2 0.2 6.8E-06 50.9 13.3 23 226-248 41-63 (256)
269 3c8u_A Fructokinase; YP_612366 95.0 0.014 4.7E-07 57.7 4.0 35 214-248 10-44 (208)
270 4a74_A DNA repair and recombin 95.0 0.082 2.8E-06 52.8 9.7 46 225-270 24-73 (231)
271 1pzn_A RAD51, DNA repair and r 95.0 0.071 2.4E-06 57.2 9.6 105 214-319 119-241 (349)
272 1nlf_A Regulatory protein REPA 94.9 0.05 1.7E-06 56.5 7.9 43 226-268 30-80 (279)
273 1vma_A Cell division protein F 94.9 0.066 2.2E-06 56.1 8.7 91 225-319 103-196 (306)
274 1rz3_A Hypothetical protein rb 94.8 0.019 6.7E-07 56.3 4.4 41 208-248 3-44 (201)
275 3nbx_X ATPase RAVA; AAA+ ATPas 94.8 0.016 5.6E-07 65.0 4.3 43 203-249 22-64 (500)
276 3dm5_A SRP54, signal recogniti 94.8 0.096 3.3E-06 57.4 10.2 25 225-249 99-123 (443)
277 2pjz_A Hypothetical protein ST 94.8 0.24 8.4E-06 50.5 12.7 22 227-248 31-52 (263)
278 3ice_A Transcription terminati 94.8 0.018 6.1E-07 61.2 4.1 102 214-320 163-272 (422)
279 3hws_A ATP-dependent CLP prote 94.7 0.013 4.4E-07 63.7 3.1 46 204-249 16-74 (363)
280 3jvv_A Twitching mobility prot 94.6 0.012 4E-07 63.3 2.3 112 226-351 123-235 (356)
281 2orw_A Thymidine kinase; TMTK, 94.5 0.0036 1.2E-07 60.5 -1.7 22 227-248 4-25 (184)
282 3e70_C DPA, signal recognition 94.5 0.16 5.3E-06 53.8 10.7 25 225-249 128-152 (328)
283 1qhx_A CPT, protein (chloramph 94.5 0.015 5.2E-07 55.7 2.7 22 227-248 4-25 (178)
284 3tui_C Methionine import ATP-b 94.5 0.28 9.5E-06 52.3 12.6 23 226-248 54-76 (366)
285 1ypw_A Transitional endoplasmi 94.5 0.0093 3.2E-07 71.8 1.3 151 203-378 477-661 (806)
286 3cf2_A TER ATPase, transitiona 94.5 0.033 1.1E-06 66.0 5.9 151 203-378 477-661 (806)
287 2dr3_A UPF0273 protein PH0284; 94.5 0.1 3.5E-06 52.7 9.1 40 226-267 23-62 (247)
288 2eyu_A Twitching motility prot 94.4 0.051 1.7E-06 55.6 6.5 111 226-350 25-136 (261)
289 2q6t_A DNAB replication FORK h 94.4 0.52 1.8E-05 52.4 15.3 71 207-281 182-252 (444)
290 2ck3_D ATP synthase subunit be 94.4 0.086 2.9E-06 57.8 8.4 65 214-280 142-207 (482)
291 1zp6_A Hypothetical protein AT 94.3 0.025 8.4E-07 54.9 3.8 23 226-248 9-31 (191)
292 1odf_A YGR205W, hypothetical 3 94.3 0.037 1.3E-06 57.6 5.1 27 223-249 28-54 (290)
293 3kl4_A SRP54, signal recogniti 94.3 0.1 3.5E-06 57.2 8.9 25 225-249 96-120 (433)
294 3lw7_A Adenylate kinase relate 94.2 0.021 7.1E-07 54.4 3.0 20 227-246 2-21 (179)
295 1j8m_F SRP54, signal recogniti 94.2 0.18 6.1E-06 52.6 10.2 90 226-318 98-189 (297)
296 4a1f_A DNAB helicase, replicat 94.2 0.24 8.3E-06 52.4 11.3 54 225-282 45-98 (338)
297 3kb2_A SPBC2 prophage-derived 94.2 0.021 7.2E-07 54.2 2.9 22 227-248 2-23 (173)
298 1fx0_B ATP synthase beta chain 94.2 0.14 4.7E-06 56.5 9.5 104 214-319 154-276 (498)
299 2px0_A Flagellar biosynthesis 94.2 0.12 4.1E-06 53.9 8.8 24 226-249 105-128 (296)
300 1ly1_A Polynucleotide kinase; 94.1 0.025 8.5E-07 54.2 3.2 22 227-248 3-24 (181)
301 3vaa_A Shikimate kinase, SK; s 94.1 0.023 8E-07 55.6 3.0 23 226-248 25-47 (199)
302 2bbs_A Cystic fibrosis transme 94.0 0.5 1.7E-05 48.9 13.1 23 226-248 64-86 (290)
303 1kgd_A CASK, peripheral plasma 93.9 0.027 9.1E-07 54.1 3.0 24 226-249 5-28 (180)
304 2r6a_A DNAB helicase, replicat 93.9 0.44 1.5E-05 53.1 13.4 69 207-279 185-253 (454)
305 3uie_A Adenylyl-sulfate kinase 93.8 0.034 1.2E-06 54.4 3.7 24 226-249 25-48 (200)
306 2ffh_A Protein (FFH); SRP54, s 93.8 0.17 5.8E-06 55.4 9.4 24 226-249 98-121 (425)
307 3trf_A Shikimate kinase, SK; a 93.8 0.028 9.6E-07 54.2 2.9 23 226-248 5-27 (185)
308 2xxa_A Signal recognition part 93.7 0.26 9.1E-06 54.2 10.8 40 225-265 99-138 (433)
309 1kag_A SKI, shikimate kinase I 93.7 0.025 8.5E-07 53.9 2.3 22 227-248 5-26 (173)
310 2rhm_A Putative kinase; P-loop 93.6 0.038 1.3E-06 53.6 3.6 23 226-248 5-27 (193)
311 3bgw_A DNAB-like replicative h 93.6 0.39 1.3E-05 53.1 12.2 70 206-280 178-247 (444)
312 3cmu_A Protein RECA, recombina 93.6 0.12 4E-06 66.9 8.8 100 213-319 1413-1515(2050)
313 1nks_A Adenylate kinase; therm 93.5 0.037 1.2E-06 53.7 3.3 23 227-249 2-24 (194)
314 3llm_A ATP-dependent RNA helic 93.5 0.34 1.2E-05 48.6 10.6 104 212-320 66-187 (235)
315 1ex7_A Guanylate kinase; subst 93.4 0.026 8.9E-07 54.3 1.9 22 227-248 2-23 (186)
316 4gp7_A Metallophosphoesterase; 93.4 0.039 1.3E-06 52.5 3.1 22 226-247 9-30 (171)
317 1zu4_A FTSY; GTPase, signal re 93.3 0.23 8E-06 52.2 9.3 25 225-249 104-128 (320)
318 4eun_A Thermoresistant glucoki 93.3 0.04 1.4E-06 53.9 3.2 23 226-248 29-51 (200)
319 3tau_A Guanylate kinase, GMP k 93.3 0.042 1.4E-06 54.2 3.3 24 226-249 8-31 (208)
320 1sky_E F1-ATPase, F1-ATP synth 93.3 0.18 6.2E-06 55.4 8.6 62 215-278 141-203 (473)
321 1ls1_A Signal recognition part 93.3 0.22 7.5E-06 51.9 8.9 90 226-318 98-189 (295)
322 1q57_A DNA primase/helicase; d 93.3 0.37 1.3E-05 54.6 11.6 54 225-281 241-294 (503)
323 3rlf_A Maltose/maltodextrin im 93.3 0.3 1E-05 52.5 10.0 23 226-248 29-51 (381)
324 1knq_A Gluconate kinase; ALFA/ 93.3 0.045 1.5E-06 52.2 3.3 23 226-248 8-30 (175)
325 3tr0_A Guanylate kinase, GMP k 93.2 0.044 1.5E-06 53.7 3.3 24 226-249 7-30 (205)
326 2bdt_A BH3686; alpha-beta prot 93.2 0.046 1.6E-06 52.9 3.3 22 227-248 3-24 (189)
327 3t61_A Gluconokinase; PSI-biol 93.2 0.031 1.1E-06 54.8 2.1 24 226-249 18-41 (202)
328 3iij_A Coilin-interacting nucl 93.2 0.036 1.2E-06 53.2 2.5 23 226-248 11-33 (180)
329 1tue_A Replication protein E1; 93.2 0.064 2.2E-06 51.8 4.1 37 212-249 45-81 (212)
330 2ga8_A Hypothetical 39.9 kDa p 93.1 0.056 1.9E-06 57.2 4.1 40 209-248 5-46 (359)
331 2qor_A Guanylate kinase; phosp 93.1 0.036 1.2E-06 54.5 2.5 25 225-249 11-35 (204)
332 2ze6_A Isopentenyl transferase 93.1 0.044 1.5E-06 55.9 3.2 23 227-249 2-24 (253)
333 1kht_A Adenylate kinase; phosp 93.1 0.043 1.5E-06 53.1 3.0 22 227-248 4-25 (192)
334 1y63_A LMAJ004144AAA protein; 93.0 0.048 1.6E-06 52.6 3.2 23 226-248 10-32 (184)
335 3tlx_A Adenylate kinase 2; str 93.0 0.051 1.7E-06 55.1 3.5 24 225-248 28-51 (243)
336 1zuh_A Shikimate kinase; alpha 93.0 0.043 1.5E-06 51.9 2.8 24 225-248 6-29 (168)
337 1ye8_A Protein THEP1, hypothet 93.0 0.049 1.7E-06 52.1 3.1 22 228-249 2-23 (178)
338 3umf_A Adenylate kinase; rossm 93.0 0.054 1.8E-06 53.5 3.5 25 225-249 28-52 (217)
339 4akg_A Glutathione S-transfera 93.0 0.39 1.3E-05 64.5 12.5 136 227-378 1268-1431(2695)
340 3a00_A Guanylate kinase, GMP k 93.0 0.038 1.3E-06 53.3 2.4 22 227-248 2-23 (186)
341 2qt1_A Nicotinamide riboside k 93.0 0.06 2E-06 53.0 3.8 23 226-248 21-43 (207)
342 1gvn_B Zeta; postsegregational 93.0 0.073 2.5E-06 55.3 4.7 24 225-248 32-55 (287)
343 3asz_A Uridine kinase; cytidin 92.9 0.057 1.9E-06 53.3 3.7 24 225-248 5-28 (211)
344 2c95_A Adenylate kinase 1; tra 92.9 0.053 1.8E-06 52.7 3.3 23 226-248 9-31 (196)
345 1uf9_A TT1252 protein; P-loop, 92.9 0.059 2E-06 52.7 3.6 24 225-248 7-30 (203)
346 3ney_A 55 kDa erythrocyte memb 92.9 0.051 1.7E-06 52.7 3.0 24 226-249 19-42 (197)
347 3vr4_D V-type sodium ATPase su 92.9 0.08 2.7E-06 57.7 4.9 105 214-319 140-258 (465)
348 2j41_A Guanylate kinase; GMP, 92.8 0.054 1.9E-06 53.2 3.3 24 226-249 6-29 (207)
349 1tev_A UMP-CMP kinase; ploop, 92.8 0.054 1.9E-06 52.5 3.3 23 226-248 3-25 (196)
350 1g8p_A Magnesium-chelatase 38 92.8 0.031 1.1E-06 60.2 1.5 45 203-249 24-68 (350)
351 2jaq_A Deoxyguanosine kinase; 92.8 0.05 1.7E-06 53.2 3.0 22 228-249 2-23 (205)
352 1lvg_A Guanylate kinase, GMP k 92.7 0.045 1.5E-06 53.5 2.4 23 226-248 4-26 (198)
353 1ukz_A Uridylate kinase; trans 92.7 0.064 2.2E-06 52.5 3.5 24 225-248 14-37 (203)
354 1via_A Shikimate kinase; struc 92.7 0.051 1.7E-06 51.8 2.7 21 228-248 6-26 (175)
355 2if2_A Dephospho-COA kinase; a 92.6 0.056 1.9E-06 53.0 3.1 21 228-248 3-23 (204)
356 2yvu_A Probable adenylyl-sulfa 92.6 0.066 2.3E-06 51.6 3.5 25 225-249 12-36 (186)
357 2pt7_A CAG-ALFA; ATPase, prote 92.6 0.21 7.1E-06 53.0 7.7 105 227-348 172-276 (330)
358 3cm0_A Adenylate kinase; ATP-b 92.6 0.062 2.1E-06 51.7 3.3 23 226-248 4-26 (186)
359 2ewv_A Twitching motility prot 92.6 0.13 4.6E-06 55.5 6.3 110 226-349 136-246 (372)
360 3gqb_B V-type ATP synthase bet 92.6 0.09 3.1E-06 57.3 4.8 105 214-319 136-261 (464)
361 3a4m_A L-seryl-tRNA(SEC) kinas 92.6 0.062 2.1E-06 55.1 3.4 23 226-248 4-26 (260)
362 1g41_A Heat shock protein HSLU 92.6 0.05 1.7E-06 59.7 2.9 47 203-249 15-73 (444)
363 2iyv_A Shikimate kinase, SK; t 92.6 0.043 1.5E-06 52.8 2.1 21 228-248 4-24 (184)
364 2r9v_A ATP synthase subunit al 92.6 0.15 5.2E-06 56.2 6.6 102 214-320 164-278 (515)
365 1jjv_A Dephospho-COA kinase; P 92.5 0.064 2.2E-06 52.7 3.3 22 227-248 3-24 (206)
366 1cke_A CK, MSSA, protein (cyti 92.5 0.057 1.9E-06 54.0 3.0 22 227-248 6-27 (227)
367 1fx0_A ATP synthase alpha chai 92.5 0.16 5.6E-06 56.0 6.7 91 226-320 163-266 (507)
368 2plr_A DTMP kinase, probable t 92.4 0.068 2.3E-06 52.7 3.4 24 226-249 4-27 (213)
369 2bwj_A Adenylate kinase 5; pho 92.4 0.06 2E-06 52.5 3.0 23 226-248 12-34 (199)
370 2c61_A A-type ATP synthase non 92.4 0.11 3.9E-06 56.9 5.4 105 214-319 141-259 (469)
371 1qf9_A UMP/CMP kinase, protein 92.4 0.069 2.4E-06 51.6 3.3 23 226-248 6-28 (194)
372 2bbw_A Adenylate kinase 4, AK4 92.3 0.065 2.2E-06 54.4 3.2 23 226-248 27-49 (246)
373 1htw_A HI0065; nucleotide-bind 92.3 0.082 2.8E-06 49.3 3.6 24 226-249 33-56 (158)
374 1e6c_A Shikimate kinase; phosp 92.3 0.051 1.7E-06 51.6 2.3 22 227-248 3-24 (173)
375 1uj2_A Uridine-cytidine kinase 92.3 0.071 2.4E-06 54.3 3.4 24 225-248 21-44 (252)
376 1znw_A Guanylate kinase, GMP k 92.3 0.068 2.3E-06 52.6 3.2 23 226-248 20-42 (207)
377 1xjc_A MOBB protein homolog; s 92.2 0.069 2.4E-06 50.3 2.9 24 226-249 4-27 (169)
378 3tqc_A Pantothenate kinase; bi 92.2 0.088 3E-06 55.4 4.0 25 224-248 90-114 (321)
379 2p5t_B PEZT; postsegregational 92.2 0.097 3.3E-06 53.3 4.3 24 225-248 31-54 (253)
380 2hf9_A Probable hydrogenase ni 92.2 0.088 3E-06 52.5 3.9 25 225-249 37-61 (226)
381 2cdn_A Adenylate kinase; phosp 92.1 0.069 2.3E-06 52.2 3.0 23 226-248 20-42 (201)
382 2vli_A Antibiotic resistance p 92.1 0.049 1.7E-06 52.3 1.9 23 226-248 5-27 (183)
383 3aez_A Pantothenate kinase; tr 92.1 0.08 2.7E-06 55.7 3.7 24 225-248 89-112 (312)
384 3l0o_A Transcription terminati 92.1 0.11 3.8E-06 55.2 4.6 53 213-267 163-216 (427)
385 2zts_A Putative uncharacterize 92.1 0.22 7.6E-06 50.3 6.9 49 226-277 30-78 (251)
386 3cmu_A Protein RECA, recombina 92.0 0.32 1.1E-05 63.0 9.5 108 205-319 361-471 (2050)
387 2pt5_A Shikimate kinase, SK; a 92.0 0.073 2.5E-06 50.2 2.9 21 228-248 2-22 (168)
388 1z6g_A Guanylate kinase; struc 92.0 0.064 2.2E-06 53.3 2.6 24 226-249 23-46 (218)
389 1aky_A Adenylate kinase; ATP:A 91.9 0.077 2.6E-06 52.8 3.1 23 226-248 4-26 (220)
390 2z0h_A DTMP kinase, thymidylat 91.9 0.14 4.8E-06 49.6 5.0 22 228-249 2-23 (197)
391 1nn5_A Similar to deoxythymidy 91.9 0.084 2.9E-06 52.1 3.3 23 226-248 9-31 (215)
392 3fwy_A Light-independent proto 91.9 0.087 3E-06 55.4 3.6 41 225-267 47-87 (314)
393 2yhs_A FTSY, cell division pro 91.9 0.34 1.2E-05 53.6 8.4 24 225-248 292-315 (503)
394 3cmw_A Protein RECA, recombina 91.8 0.23 8E-06 63.4 8.0 104 209-319 365-471 (1706)
395 1s96_A Guanylate kinase, GMP k 91.8 0.083 2.8E-06 52.4 3.2 24 226-249 16-39 (219)
396 1zd8_A GTP:AMP phosphotransfer 91.8 0.078 2.7E-06 53.0 3.0 23 226-248 7-29 (227)
397 2wwf_A Thymidilate kinase, put 91.8 0.084 2.9E-06 52.0 3.2 24 226-249 10-33 (212)
398 2pbr_A DTMP kinase, thymidylat 91.7 0.082 2.8E-06 51.2 3.0 21 228-248 2-22 (195)
399 2jeo_A Uridine-cytidine kinase 91.7 0.099 3.4E-06 53.0 3.7 23 226-248 25-47 (245)
400 2pez_A Bifunctional 3'-phospho 91.7 0.096 3.3E-06 50.0 3.4 23 226-248 5-27 (179)
401 4e22_A Cytidylate kinase; P-lo 91.7 0.088 3E-06 53.6 3.3 23 226-248 27-49 (252)
402 2f1r_A Molybdopterin-guanine d 91.7 0.073 2.5E-06 50.4 2.4 23 227-249 3-25 (171)
403 2wsm_A Hydrogenase expression/ 91.6 0.086 3E-06 52.3 3.1 25 225-249 29-53 (221)
404 1gtv_A TMK, thymidylate kinase 91.6 0.056 1.9E-06 53.4 1.7 22 228-249 2-23 (214)
405 2j37_W Signal recognition part 91.6 0.68 2.3E-05 51.8 10.6 25 225-249 100-124 (504)
406 2grj_A Dephospho-COA kinase; T 91.6 0.094 3.2E-06 50.7 3.2 24 225-248 11-34 (192)
407 2qe7_A ATP synthase subunit al 91.6 0.23 7.7E-06 54.8 6.5 102 214-320 151-265 (502)
408 1rj9_A FTSY, signal recognitio 91.5 0.098 3.3E-06 54.7 3.4 24 225-248 101-124 (304)
409 3p32_A Probable GTPase RV1496/ 91.5 0.16 5.3E-06 54.7 5.2 38 212-249 65-102 (355)
410 3tif_A Uncharacterized ABC tra 91.5 0.16 5.3E-06 51.0 4.8 34 226-262 31-64 (235)
411 1m7g_A Adenylylsulfate kinase; 91.4 0.11 3.6E-06 51.3 3.5 24 226-249 25-48 (211)
412 1zak_A Adenylate kinase; ATP:A 91.4 0.085 2.9E-06 52.5 2.8 23 226-248 5-27 (222)
413 2v54_A DTMP kinase, thymidylat 91.3 0.098 3.3E-06 51.2 3.1 24 226-249 4-27 (204)
414 3zvl_A Bifunctional polynucleo 91.3 0.47 1.6E-05 52.1 8.9 25 225-249 257-281 (416)
415 3hjn_A DTMP kinase, thymidylat 91.2 0.22 7.4E-06 48.4 5.4 49 228-278 2-50 (197)
416 3fb4_A Adenylate kinase; psych 91.2 0.099 3.4E-06 51.7 3.0 21 228-248 2-22 (216)
417 2f6r_A COA synthase, bifunctio 91.1 0.12 4.2E-06 53.4 3.7 24 225-248 74-97 (281)
418 3oaa_A ATP synthase subunit al 91.1 0.33 1.1E-05 53.4 7.1 103 214-320 151-265 (513)
419 2i3b_A HCR-ntpase, human cance 91.1 0.092 3.1E-06 50.7 2.5 22 228-249 3-24 (189)
420 3k1j_A LON protease, ATP-depen 91.0 0.2 7E-06 58.1 5.8 43 203-249 41-83 (604)
421 3dl0_A Adenylate kinase; phosp 91.0 0.11 3.7E-06 51.5 3.0 21 228-248 2-22 (216)
422 3j16_B RLI1P; ribosome recycli 91.0 1.1 3.6E-05 51.7 11.7 23 226-248 103-125 (608)
423 3nwj_A ATSK2; P loop, shikimat 91.0 0.086 2.9E-06 53.4 2.3 22 227-248 49-70 (250)
424 3gfo_A Cobalt import ATP-bindi 90.9 0.18 6E-06 51.9 4.6 23 226-248 34-56 (275)
425 1vht_A Dephospho-COA kinase; s 90.9 0.13 4.5E-06 51.0 3.5 23 226-248 4-26 (218)
426 1b0u_A Histidine permease; ABC 90.8 0.19 6.6E-06 51.3 4.8 23 226-248 32-54 (262)
427 3b85_A Phosphate starvation-in 90.8 0.13 4.4E-06 50.5 3.3 23 227-249 23-45 (208)
428 3a8t_A Adenylate isopentenyltr 90.8 0.14 4.8E-06 53.8 3.7 23 226-248 40-62 (339)
429 2onk_A Molybdate/tungstate ABC 90.7 0.12 4.1E-06 52.0 3.1 22 227-248 25-46 (240)
430 3b9q_A Chloroplast SRP recepto 90.7 0.13 4.5E-06 53.7 3.6 24 226-249 100-123 (302)
431 3lnc_A Guanylate kinase, GMP k 90.7 0.083 2.8E-06 53.0 1.9 23 226-248 27-50 (231)
432 2pcj_A ABC transporter, lipopr 90.6 0.12 4.1E-06 51.5 3.0 23 226-248 30-52 (224)
433 3be4_A Adenylate kinase; malar 90.6 0.11 3.6E-06 51.6 2.6 23 227-249 6-28 (217)
434 2ck3_A ATP synthase subunit al 90.6 0.38 1.3E-05 53.2 7.1 106 214-320 151-273 (510)
435 3b5x_A Lipid A export ATP-bind 90.6 0.9 3.1E-05 52.4 10.8 23 226-248 369-391 (582)
436 3sr0_A Adenylate kinase; phosp 90.6 0.13 4.3E-06 50.5 3.0 78 228-319 2-84 (206)
437 3r20_A Cytidylate kinase; stru 90.6 0.12 4.3E-06 51.4 3.0 23 226-248 9-31 (233)
438 4eaq_A DTMP kinase, thymidylat 90.5 0.21 7.2E-06 49.9 4.7 24 226-249 26-49 (229)
439 3d3q_A TRNA delta(2)-isopenten 90.5 0.13 4.4E-06 54.2 3.2 23 227-249 8-30 (340)
440 3exa_A TRNA delta(2)-isopenten 90.5 0.14 4.8E-06 53.1 3.4 23 226-248 3-25 (322)
441 1sq5_A Pantothenate kinase; P- 90.5 0.15 5.2E-06 53.6 3.8 24 225-248 79-102 (308)
442 1cr0_A DNA primase/helicase; R 90.5 0.26 8.9E-06 51.4 5.6 51 226-279 35-85 (296)
443 2olj_A Amino acid ABC transpor 90.4 0.22 7.6E-06 50.8 4.8 23 226-248 50-72 (263)
444 2wji_A Ferrous iron transport 90.4 0.2 6.8E-06 47.0 4.2 23 227-249 4-26 (165)
445 3crm_A TRNA delta(2)-isopenten 90.4 0.14 4.7E-06 53.7 3.2 22 227-248 6-27 (323)
446 2ff7_A Alpha-hemolysin translo 90.3 0.22 7.5E-06 50.4 4.6 23 226-248 35-57 (247)
447 1np6_A Molybdopterin-guanine d 90.2 0.14 4.8E-06 48.6 2.9 24 226-249 6-29 (174)
448 1e4v_A Adenylate kinase; trans 90.2 0.14 4.9E-06 50.5 3.1 21 228-248 2-22 (214)
449 1ji0_A ABC transporter; ATP bi 90.2 0.22 7.7E-06 50.1 4.6 23 226-248 32-54 (240)
450 2zej_A Dardarin, leucine-rich 90.1 0.13 4.4E-06 49.3 2.7 22 228-249 4-25 (184)
451 3ake_A Cytidylate kinase; CMP 90.1 0.14 4.8E-06 50.1 3.0 21 228-248 4-24 (208)
452 4g1u_C Hemin import ATP-bindin 90.1 0.22 7.6E-06 50.9 4.6 23 226-248 37-59 (266)
453 2xb4_A Adenylate kinase; ATP-b 90.1 0.14 4.8E-06 51.0 3.0 21 228-248 2-22 (223)
454 1oix_A RAS-related protein RAB 90.1 0.15 5.2E-06 49.2 3.1 24 226-249 29-52 (191)
455 2ixe_A Antigen peptide transpo 90.0 0.24 8.4E-06 50.8 4.8 23 226-248 45-67 (271)
456 1svm_A Large T antigen; AAA+ f 90.0 0.24 8.2E-06 53.4 4.9 35 214-248 157-191 (377)
457 3e1s_A Exodeoxyribonuclease V, 90.0 1 3.5E-05 51.6 10.4 23 227-249 205-227 (574)
458 1ak2_A Adenylate kinase isoenz 89.9 0.16 5.5E-06 50.9 3.2 24 226-249 16-39 (233)
459 1fzq_A ADP-ribosylation factor 89.7 0.21 7.1E-06 47.7 3.8 25 225-249 15-39 (181)
460 1mv5_A LMRA, multidrug resista 89.7 0.18 6.2E-06 50.9 3.4 23 226-248 28-50 (243)
461 3vkg_A Dynein heavy chain, cyt 89.7 1.2 4.2E-05 60.4 12.0 85 215-319 1296-1384(3245)
462 2og2_A Putative signal recogni 89.6 0.18 6.3E-06 53.8 3.6 25 225-249 156-180 (359)
463 2yz2_A Putative ABC transporte 89.6 0.28 9.5E-06 50.2 4.8 23 226-248 33-55 (266)
464 1ltq_A Polynucleotide kinase; 89.6 0.17 5.7E-06 53.1 3.2 22 227-248 3-24 (301)
465 1g6h_A High-affinity branched- 89.6 0.16 5.4E-06 51.8 2.9 23 226-248 33-55 (257)
466 3foz_A TRNA delta(2)-isopenten 89.6 0.17 6E-06 52.3 3.2 24 226-249 10-33 (316)
467 1sgw_A Putative ABC transporte 89.6 0.14 4.7E-06 50.5 2.3 23 226-248 35-57 (214)
468 3mfy_A V-type ATP synthase alp 89.6 0.56 1.9E-05 52.2 7.3 58 214-276 216-274 (588)
469 2d2e_A SUFC protein; ABC-ATPas 89.5 0.17 5.9E-06 51.3 3.1 23 226-248 29-51 (250)
470 2v9p_A Replication protein E1; 89.4 0.28 9.5E-06 51.1 4.6 24 225-248 125-148 (305)
471 1yrb_A ATP(GTP)binding protein 89.4 0.21 7.1E-06 51.0 3.7 25 225-249 13-37 (262)
472 2zu0_C Probable ATP-dependent 89.4 0.19 6.5E-06 51.5 3.3 23 226-248 46-68 (267)
473 4edh_A DTMP kinase, thymidylat 89.4 0.44 1.5E-05 46.9 5.8 24 226-249 6-29 (213)
474 3nh6_A ATP-binding cassette SU 89.2 0.28 9.5E-06 51.2 4.5 23 226-248 80-102 (306)
475 2qmh_A HPR kinase/phosphorylas 89.2 0.19 6.6E-06 48.2 3.0 23 226-248 34-56 (205)
476 2f9l_A RAB11B, member RAS onco 89.2 0.18 6E-06 49.1 2.8 24 226-249 5-28 (199)
477 3vr4_A V-type sodium ATPase ca 89.2 0.42 1.5E-05 53.3 6.1 58 214-276 221-279 (600)
478 2ghi_A Transport protein; mult 89.2 0.19 6.4E-06 51.3 3.1 23 226-248 46-68 (260)
479 2qi9_C Vitamin B12 import ATP- 89.1 0.18 6.3E-06 51.0 2.9 23 226-248 26-48 (249)
480 2r8r_A Sensor protein; KDPD, P 88.9 0.26 8.8E-06 48.5 3.7 104 228-345 8-125 (228)
481 2qm8_A GTPase/ATPase; G protei 88.8 0.36 1.2E-05 51.4 5.1 25 224-248 53-77 (337)
482 2ihy_A ABC transporter, ATP-bi 88.8 0.19 6.6E-06 51.8 2.9 23 226-248 47-69 (279)
483 2nq2_C Hypothetical ABC transp 88.8 0.2 6.7E-06 50.9 2.9 23 226-248 31-53 (253)
484 2dyk_A GTP-binding protein; GT 88.7 0.24 8.1E-06 45.9 3.3 23 227-249 2-24 (161)
485 3lv8_A DTMP kinase, thymidylat 88.7 0.44 1.5E-05 47.6 5.4 36 226-262 27-62 (236)
486 3rfe_A Platelet glycoprotein I 88.7 0.31 1.1E-05 43.6 3.8 34 643-676 31-65 (130)
487 2wjg_A FEOB, ferrous iron tran 88.6 0.26 8.8E-06 47.2 3.5 24 226-249 7-30 (188)
488 3fvq_A Fe(3+) IONS import ATP- 88.6 0.37 1.3E-05 51.4 4.9 23 226-248 30-52 (359)
489 2ce2_X GTPase HRAS; signaling 88.5 0.22 7.6E-06 46.2 2.9 22 228-249 5-26 (166)
490 3rfe_A Platelet glycoprotein I 88.5 0.38 1.3E-05 43.0 4.4 37 808-844 30-66 (130)
491 3cmw_A Protein RECA, recombina 88.5 0.62 2.1E-05 59.6 7.7 99 214-319 1418-1519(1706)
492 1tq4_A IIGP1, interferon-induc 88.5 0.22 7.5E-06 54.3 3.2 34 215-248 58-91 (413)
493 2lkc_A Translation initiation 88.4 0.36 1.2E-05 45.6 4.4 25 225-249 7-31 (178)
494 2vp4_A Deoxynucleoside kinase; 88.4 0.21 7.3E-06 49.9 2.9 24 225-248 19-42 (230)
495 3sop_A Neuronal-specific septi 88.3 0.24 8.2E-06 50.8 3.2 22 228-249 4-25 (270)
496 2nzj_A GTP-binding protein REM 88.3 0.23 7.8E-06 46.8 2.9 24 226-249 4-27 (175)
497 2gj8_A MNME, tRNA modification 88.2 0.24 8.3E-06 46.8 3.0 23 227-249 5-27 (172)
498 1q3t_A Cytidylate kinase; nucl 88.2 0.25 8.5E-06 49.6 3.2 24 225-248 15-38 (236)
499 2p67_A LAO/AO transport system 88.2 0.42 1.4E-05 50.9 5.2 25 224-248 54-78 (341)
500 2iw3_A Elongation factor 3A; a 88.1 2.6 9E-05 50.9 12.4 123 226-354 461-612 (986)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.1e-48 Score=453.94 Aligned_cols=319 Identities=18% Similarity=0.252 Sum_probs=261.7
Q ss_pred cccccCHHHHHHHHhcC-CCCcEEEEEEecCCchHHHHHHHHHc--ccCccCCCCEEEEEEeCCCC--CHHHHHHHHHHH
Q 036584 206 VGFEDDTDLLLAKLLDK-EQRRLVISIYGMGGLGKTTLARKLYH--NNDVKNKFDYCAWVSVSQDY--KIKDLLLRIIKS 280 (919)
Q Consensus 206 vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~~GiGKTtLa~~v~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~il~~ 280 (919)
|||++++++|.++|... +...++|+|+||||+||||||+++|+ +.+++.+|++++||++++.+ +...++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 59999999999999865 44589999999999999999999998 67899999999999999885 789999999999
Q ss_pred hccccc---ccccccCCHHHHHHHHHHHhccC-ceEEEEecccchhHHHHHHhhCCCCCCCcEEEEEecchhhhhhcCCC
Q 036584 281 FNIMTA---LEDLETKTEEDLARSLRKSLEAY-SYLMVIDDIWHKEDWVSLKSAFPENKIGSRVIITTRIKDVAERSDDR 356 (919)
Q Consensus 281 l~~~~~---~~~~~~~~~~~~~~~l~~~l~~~-~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~ 356 (919)
++.... ....+..+...+...+++.|+++ ||||||||||+.+.+ .+.. .+||+||||||++.++..++..
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~~ 284 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQT 284 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCSC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcCCC
Confidence 986421 11333456678899999999996 999999999998754 2211 1699999999999999887644
Q ss_pred CceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhhcC-C
Q 036584 357 NYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVLGGLLSTKRPQEWREVRNHIWRHLRN-D 435 (919)
Q Consensus 357 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~~~~l~~~~~~~w~~~~~~~~~~l~~-~ 435 (919)
...|+|++|+.++||+||.+++|.... ++.+.+++++|+++|+|+||||+++|+.++.+. |..+ +.+.+.+.. .
T Consensus 285 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~---w~~~-~~l~~~l~~~~ 359 (549)
T 2a5y_B 285 CEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT---FEKM-AQLNNKLESRG 359 (549)
T ss_dssp EEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS---HHHH-HHHHHHHHHHC
T ss_pred CeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccch---HHHH-HHhHHHhhccc
Confidence 367999999999999999999986543 467888999999999999999999999997763 4433 333333221 2
Q ss_pred chhhHHHHHhccccchHHHHHHHh-----------HhcCCCCCceecHHHHHHHHHHc--CCcccCC-CCCHHHHHHHHH
Q 036584 436 SIQVSYLLDLSFNDLSHQLKLCFL-----------YLSLFPEDFVINVEKLIRLLVAE--GFIRQDE-DRTMEEVAKDIL 501 (919)
Q Consensus 436 ~~~i~~~l~~sy~~L~~~~k~c~~-----------~~s~fp~~~~i~~~~li~~w~ae--g~i~~~~-~~~~e~~~~~~l 501 (919)
...+..++.+||++||+++|.||+ |||+||+++.|+ +.+|+|+ ||+.... +.+.+++++ ||
T Consensus 360 ~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l 434 (549)
T 2a5y_B 360 LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RL 434 (549)
T ss_dssp SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HH
T ss_pred HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HH
Confidence 357889999999999999999999 999999999999 8899999 9998765 677888888 99
Q ss_pred HHHHHcccccccccCCCceeEEEecHHHHHHHHHHhhhcCc
Q 036584 502 DELINRSLIQVEKRCWGRISTCRVHDLLRDLAIQKAKELNF 542 (919)
Q Consensus 502 ~~L~~~sll~~~~~~~~~~~~~~~H~lv~~~~~~~~~~e~~ 542 (919)
++|+++||++.... +...+|+|||+||+||++++.++++
T Consensus 435 ~~L~~rsLl~~~~~--~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 435 KRLSKRGALLSGKR--MPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHTTTBSSCSEEEC--SSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHHcCCeeEecC--CCceEEEeChHHHHHHHHHHHHHHH
Confidence 99999999998762 2456899999999999998877654
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.9e-38 Score=407.99 Aligned_cols=320 Identities=20% Similarity=0.289 Sum_probs=260.1
Q ss_pred hcCCCCCCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCc-cCCC-CEEEEEEeCCCCC--HHH
Q 036584 197 ASFAVEENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDV-KNKF-DYCAWVSVSQDYK--IKD 272 (919)
Q Consensus 197 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~--~~~ 272 (919)
..+.....||||++++++|.++|...+...++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ ...
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 197 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLM 197 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHH
Confidence 34455677999999999999999876667899999999999999999999986433 4445 7888999998544 344
Q ss_pred HHHHHHHHhcccccccccccCCHHHHHHHHHHHhccC--ceEEEEecccchhHHHHHHhhCCCCCCCcEEEEEecchhhh
Q 036584 273 LLLRIIKSFNIMTALEDLETKTEEDLARSLRKSLEAY--SYLMVIDDIWHKEDWVSLKSAFPENKIGSRVIITTRIKDVA 350 (919)
Q Consensus 273 ~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 350 (919)
.+..++..+............+.+.+...++..+.++ |+||||||||+.+.|..+ ++||+||||||++.++
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~ 270 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVT 270 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTT
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHH
Confidence 4666777776543222233456788999999999877 999999999998766543 5689999999999998
Q ss_pred hhcCCCCceEecCC-CChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHHHHHhcCCChHHHHHHHHHHH
Q 036584 351 ERSDDRNYVHELRF-LRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVLGGLLSTKRPQEWREVRNHIW 429 (919)
Q Consensus 351 ~~~~~~~~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~~~~l~~~~~~~w~~~~~~~~ 429 (919)
..+......+.+++ |+.++|++||...++.. .+...+++++|+++|+|+||||+++|++|+.+. ..|..+++.+.
T Consensus 271 ~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~ 346 (1249)
T 3sfz_A 271 DSVMGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQ 346 (1249)
T ss_dssp TTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHH
T ss_pred HhhcCCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHh
Confidence 66544447899996 99999999999988543 344556799999999999999999999998875 46888887775
Q ss_pred HhhcC--------CchhhHHHHHhccccchHHHHHHHhHhcCCCCCceecHHHHHHHHHHcCCcccCCCCCHHHHHHHHH
Q 036584 430 RHLRN--------DSIQVSYLLDLSFNDLSHQLKLCFLYLSLFPEDFVINVEKLIRLLVAEGFIRQDEDRTMEEVAKDIL 501 (919)
Q Consensus 430 ~~l~~--------~~~~i~~~l~~sy~~L~~~~k~c~~~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~e~~~~~~l 501 (919)
..... ....+..++.+||+.||+++|.||+|||+||+++.|+++.++.+|.++ ++.++++|
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~l 415 (1249)
T 3sfz_A 347 NKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVEDIL 415 (1249)
T ss_dssp SCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHHHH
T ss_pred hhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHHHHHHH
Confidence 43211 115689999999999999999999999999999999999999999443 56789999
Q ss_pred HHHHHcccccccccCCCceeEEEecHHHHHHHHHHhhhc
Q 036584 502 DELINRSLIQVEKRCWGRISTCRVHDLLRDLAIQKAKEL 540 (919)
Q Consensus 502 ~~L~~~sll~~~~~~~~~~~~~~~H~lv~~~~~~~~~~e 540 (919)
++|+++||++... +++..+|+||++||+|++.++.+|
T Consensus 416 ~~L~~~sl~~~~~--~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 416 QEFVNKSLLFCNR--NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHTTSCEEEE--SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHhccceEEec--CCCceEEEecHHHHHHHHhhhhHH
Confidence 9999999999765 445568999999999999997765
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.1e-38 Score=373.32 Aligned_cols=289 Identities=19% Similarity=0.229 Sum_probs=231.6
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCE-EEEEEeCCCCCHHHHHHHHHHHh
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDY-CAWVSVSQDYKIKDLLLRIIKSF 281 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~il~~l 281 (919)
...|||++++++|.++|...+ ..++|+|+||||+||||||+++|++.++..+|+. ++|+++++.++...++..++..+
T Consensus 128 k~~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 345999999999999998743 3789999999999999999999987778889986 99999999999888888888765
Q ss_pred cccccc--ccc-----ccCCHHHHHHHHHHHh---ccCceEEEEecccchhHHHHHHhhCCCCCCCcEEEEEecchhhhh
Q 036584 282 NIMTAL--EDL-----ETKTEEDLARSLRKSL---EAYSYLMVIDDIWHKEDWVSLKSAFPENKIGSRVIITTRIKDVAE 351 (919)
Q Consensus 282 ~~~~~~--~~~-----~~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 351 (919)
...... ... ...+.+.+...+++.+ .++|+||||||||+.+.|+.+. +||+||||||++.++.
T Consensus 207 ~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~ 279 (1221)
T 1vt4_I 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTD 279 (1221)
T ss_dssp HHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHH
T ss_pred hhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHH
Confidence 432100 000 0112345666777766 6799999999999988888752 5899999999999886
Q ss_pred hcCCCCceEecC------CCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHHHHHhcCC--ChHHHHH
Q 036584 352 RSDDRNYVHELR------FLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVLGGLLSTK--RPQEWRE 423 (919)
Q Consensus 352 ~~~~~~~~~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~~~~l~~~--~~~~w~~ 423 (919)
.+... ..+.++ +|+.+|||+||.++... . ..++..+| |+|+||||+++|+.|+.+ +.++|..
T Consensus 280 ~l~g~-~vy~LeL~d~dL~LS~eEA~eLF~~~~g~-~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~ 349 (1221)
T 1vt4_I 280 FLSAA-TTTHISLDHHSMTLTPDEVKSLLLKYLDC-R-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKH 349 (1221)
T ss_dssp HHHHH-SSCEEEECSSSSCCCHHHHHHHHHHHHCC-C-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHH
T ss_pred hcCCC-eEEEecCccccCCcCHHHHHHHHHHHcCC-C-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhc
Confidence 43321 345566 99999999999998422 1 12233333 999999999999999988 5777865
Q ss_pred HHHHHHHhhcCCchhhHHHHHhccccchHHH-HHHHhHhcCCCCCceecHHHHHHHHHHcCCcccCCCCCHHHHHHHHHH
Q 036584 424 VRNHIWRHLRNDSIQVSYLLDLSFNDLSHQL-KLCFLYLSLFPEDFVINVEKLIRLLVAEGFIRQDEDRTMEEVAKDILD 502 (919)
Q Consensus 424 ~~~~~~~~l~~~~~~i~~~l~~sy~~L~~~~-k~c~~~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~e~~~~~~l~ 502 (919)
. ....+..+|++||+.||++. |.||+|||+||+++.|+++.++.+|+++| ++.++++|+
T Consensus 350 ~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedAe~~L~ 409 (1221)
T 1vt4_I 350 V----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDVMVVVN 409 (1221)
T ss_dssp C----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHHHHHHH
T ss_pred C----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHHHHHHH
Confidence 3 23679999999999999999 99999999999999999999999998876 245889999
Q ss_pred HHHHcccccccccCCCceeEEEecHHHHHHH
Q 036584 503 ELINRSLIQVEKRCWGRISTCRVHDLLRDLA 533 (919)
Q Consensus 503 ~L~~~sll~~~~~~~~~~~~~~~H~lv~~~~ 533 (919)
+|+++||++... ...+|+|||++++++
T Consensus 410 eLvdRSLLq~d~----~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 410 KLHKYSLVEKQP----KESTISIPSIYLELK 436 (1221)
T ss_dssp HHHTSSSSSBCS----SSSEEBCCCHHHHHH
T ss_pred HHHhhCCEEEeC----CCCEEEehHHHHHHh
Confidence 999999999742 235799999999855
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=2.8e-35 Score=349.02 Aligned_cols=311 Identities=21% Similarity=0.308 Sum_probs=243.2
Q ss_pred CCCCCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCc-cCCC-CEEEEEEeCCCCCHHHHHHHH
Q 036584 200 AVEENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDV-KNKF-DYCAWVSVSQDYKIKDLLLRI 277 (919)
Q Consensus 200 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~~~i 277 (919)
.....||||++++++|.++|.......++|+|+||||+||||||.+++++.+. ..+| +.++|++++.. +...++..+
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l 199 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKL 199 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHH
T ss_pred CCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHH
Confidence 35567999999999999999875556889999999999999999999986544 6788 58999999875 334444444
Q ss_pred ---HHHhcccccccccccCCHHHHHHHHHHHhcc--CceEEEEecccchhHHHHHHhhCCCCCCCcEEEEEecchhhhhh
Q 036584 278 ---IKSFNIMTALEDLETKTEEDLARSLRKSLEA--YSYLMVIDDIWHKEDWVSLKSAFPENKIGSRVIITTRIKDVAER 352 (919)
Q Consensus 278 ---l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~ 352 (919)
+..+............+.+.+...+...+.+ +++||||||+|+...+.. + ++|++||||||+..++..
T Consensus 200 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~----l---~~~~~ilvTsR~~~~~~~ 272 (591)
T 1z6t_A 200 QNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA----F---DSQCQILLTTRDKSVTDS 272 (591)
T ss_dssp HHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT----T---CSSCEEEEEESCGGGGTT
T ss_pred HHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH----h---cCCCeEEEECCCcHHHHh
Confidence 3333321111122345667888888888866 789999999998765442 2 458999999999998876
Q ss_pred cCCCCceEec---CCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHHHHHhcCCChHHHHHHHHHHH
Q 036584 353 SDDRNYVHEL---RFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVLGGLLSTKRPQEWREVRNHIW 429 (919)
Q Consensus 353 ~~~~~~~~~l---~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~~~~l~~~~~~~w~~~~~~~~ 429 (919)
+.. ..+++ ++|+.+++++||...++.. .+...+.+.+|+++|+|+||||+++|+.++.+. ..|..++..+.
T Consensus 273 ~~~--~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~ 346 (591)
T 1z6t_A 273 VMG--PKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQ 346 (591)
T ss_dssp CCS--CEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHH
T ss_pred cCC--CceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 543 34444 5899999999999988652 233356789999999999999999999998773 36888877765
Q ss_pred HhhcC--------CchhhHHHHHhccccchHHHHHHHhHhcCCCCCceecHHHHHHHHHHcCCcccCCCCCHHHHHHHHH
Q 036584 430 RHLRN--------DSIQVSYLLDLSFNDLSHQLKLCFLYLSLFPEDFVINVEKLIRLLVAEGFIRQDEDRTMEEVAKDIL 501 (919)
Q Consensus 430 ~~l~~--------~~~~i~~~l~~sy~~L~~~~k~c~~~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~e~~~~~~l 501 (919)
..... ....+..++..||+.||++.|.||++||+||+++.|+.+.+..+|.++ .+.+.+++
T Consensus 347 ~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~~~~~l 415 (591)
T 1z6t_A 347 NKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TEEVEDIL 415 (591)
T ss_dssp SCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HHHHHHHH
T ss_pred HhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-----------HHHHHHHH
Confidence 43211 125789999999999999999999999999999999999999999432 34578999
Q ss_pred HHHHHcccccccccCCCceeEEEecHHHHHHHHHHh
Q 036584 502 DELINRSLIQVEKRCWGRISTCRVHDLLRDLAIQKA 537 (919)
Q Consensus 502 ~~L~~~sll~~~~~~~~~~~~~~~H~lv~~~~~~~~ 537 (919)
++|+++||++... ++...+|+||++||++++...
T Consensus 416 ~~L~~~~Ll~~~~--~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 416 QEFVNKSLLFCDR--NGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHTTSSEEEE--ETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHhCcCeEEec--CCCccEEEEcHHHHHHHHhhh
Confidence 9999999998654 334568999999999999873
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=1.7e-23 Score=249.13 Aligned_cols=297 Identities=13% Similarity=0.124 Sum_probs=176.5
Q ss_pred chhhhccCceEEEEEeccCccccccccccchh-----------------hhhhhc--ccccceEEeecCCCc-cccChhh
Q 036584 603 LPLLFERFFLLRVFDVEADLDRESTLMHWSNR-----------------LSEKIG--DLIHLKYLGLRNSNI-GILPSSI 662 (919)
Q Consensus 603 l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~-----------------lp~~i~--~L~~Lr~L~L~~~~i-~~LP~~l 662 (919)
+|..+.++++|++|+|++ +. +.. . +|..++ ++++|++|+|++|.+ +.+|..+
T Consensus 198 ip~~l~~l~~L~~L~Ls~-n~-----l~~--~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l 269 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGN-SP-----FVA--ENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL 269 (636)
T ss_dssp ECGGGGGCTTCCEEEEES-CC-----CCG--GGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT
T ss_pred CCHHHhcccCCCEEECcC-Cc-----ccc--ccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH
Confidence 677788899999999998 77 661 2 888888 999999999999886 7888889
Q ss_pred hcCCCCcEEecCCCCCc-cc--ccCcccccc------cccccccc---cc-cccc--CCCCcCcCccccccccccc-chh
Q 036584 663 VKLQRLQTLDFSGDVGC-PV--ELPIEINMM------QELRHLIG---NF-KGTL--PIENLTNLQTLKYVQSKSW-NKV 726 (919)
Q Consensus 663 ~~L~~L~~L~L~~~~~~-~~--~lp~~i~~L------~~L~~L~~---~~-~~~~--~i~~l~~L~~L~~~~~~~~-~~~ 726 (919)
+++++|++|++++| . +. .+|..+++| ++|++|.. .. ..|. .++.+++|+.|++..+... .+.
T Consensus 270 ~~l~~L~~L~Ls~n--~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 270 KALPEMQLINVACN--RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp TTCSSCCEEECTTC--TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred hcCCCCCEEECcCC--CCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh
Confidence 99999999999988 4 54 588888776 88888832 22 3344 4778888888888877622 222
Q ss_pred hccCCCCCCeEEeeecCccccccccchhhHHhhcCC-CcEEEEeecCCCCccCcCCCCCCCCceeEEEceec--CCCCcc
Q 036584 727 NTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKN-LRFLSVKLLDANSFASLQPLSHCQCLVDLRLSGRM--KKLPED 803 (919)
Q Consensus 727 ~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~--~~~p~~ 803 (919)
.++.+++|+.|.++++... ..+ ..+..+++ |+.|+++++....++.......+++|+.|++++|. +..|.+
T Consensus 348 ~~~~l~~L~~L~L~~N~l~---~lp---~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 421 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQIT---EIP---ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421 (636)
T ss_dssp CCEEEEEESEEECCSSEEE---ECC---TTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCS
T ss_pred hhCCCCCCCEEECCCCccc---ccc---HhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhh
Confidence 7777788888888776522 222 45666777 77777754432222111111112355666665543 233443
Q ss_pred hh-------ccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccccC-----------------------------
Q 036584 804 MH-------VFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHYV----------------------------- 847 (919)
Q Consensus 804 ~~-------~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~----------------------------- 847 (919)
+. .+ ++|++|+|++|.++..+...+..+++|+.|+|++|.+..
T Consensus 422 l~~~~~~~~~~-~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 500 (636)
T 4eco_A 422 FDPLDPTPFKG-INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL 500 (636)
T ss_dssp SCTTCSSCCCC-CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCC
T ss_pred hcccccccccC-CCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcC
Confidence 33 22 455555555555543222223345555555555333220
Q ss_pred eeEEEcCC--CCcccceeEEecCCcccEEEccCCcccccceEEccc----cCccC--CcccccCCCCCCeeEecccC
Q 036584 848 KKLGCRAE--GFPLLEILQLDADGLVEWQVEEGAMPVLRGLKIAAE----IPKLK--IPERLRSVPPPAEWECEDSR 916 (919)
Q Consensus 848 ~~~~~~~~--~f~~L~~L~l~~~~l~~~~~~~~~~p~L~~L~l~~n----C~~l~--lp~~l~~L~~L~~l~~~~~~ 916 (919)
..++.... .+++|+.|+|+.|.++.++.....+++|+.|++++| .+.+. +|..+..+++|++++++++.
T Consensus 501 ~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 501 TKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp CBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred CccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc
Confidence 02222222 455555555555555554444445555666655320 12222 55556666666666665543
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=7.8e-23 Score=243.44 Aligned_cols=157 Identities=16% Similarity=0.065 Sum_probs=94.6
Q ss_pred hHHhhcCCCcEEEEeecCCCCccCcCCCCCCCCceeEEEceec--CCCC-cchhccCCCcceEEEEccCCCCCCchhhhc
Q 036584 755 ESIAKLKNLRFLSVKLLDANSFASLQPLSHCQCLVDLRLSGRM--KKLP-EDMHVFLPNLECLSLSVPYPKEDPMPALEM 831 (919)
Q Consensus 755 ~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~--~~~p-~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~ 831 (919)
..+..+++|+.|++.++....++ ..+..+++|+.|++++|. +..| ..+..+ ++|+.|++++|.+....+..++.
T Consensus 370 ~~~~~~~~L~~L~L~~n~l~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~ 446 (606)
T 3vq2_A 370 YSDLGTNSLRHLDLSFNGAIIMS--ANFMGLEELQHLDFQHSTLKRVTEFSAFLSL-EKLLYLDISYTNTKIDFDGIFLG 446 (606)
T ss_dssp HHHHCCSCCCEEECCSCSEEEEC--CCCTTCTTCCEEECTTSEEESTTTTTTTTTC-TTCCEEECTTSCCEECCTTTTTT
T ss_pred hhhccCCcccEeECCCCccccch--hhccCCCCCCeeECCCCccCCccChhhhhcc-ccCCEEECcCCCCCccchhhhcC
Confidence 45666777777777543222211 235667778888887763 2233 345555 77777777777776666666777
Q ss_pred CCCCCeEEEeeccccCeeEEEcCCCCcccceeEEecCCcccEEE-ccCCcccccceEEccccCccC--CcccccCCCCCC
Q 036584 832 LPNLIILDLHFRCHYVKKLGCRAEGFPLLEILQLDADGLVEWQV-EEGAMPVLRGLKIAAEIPKLK--IPERLRSVPPPA 908 (919)
Q Consensus 832 lp~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~l~~~~l~~~~~-~~~~~p~L~~L~l~~nC~~l~--lp~~l~~L~~L~ 908 (919)
+++|+.|+|++|......++.....+++|+.|+++.|.++.++. ....+++|++|++++ | .+. .|..+..+++|+
T Consensus 447 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-N-~l~~~~~~~~~~l~~L~ 524 (606)
T 3vq2_A 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH-N-NLLFLDSSHYNQLYSLS 524 (606)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-S-CCSCEEGGGTTTCTTCC
T ss_pred CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCC-C-cCCCcCHHHccCCCcCC
Confidence 77777777775554443344445566677777776555655432 234566666666666 3 444 456666666666
Q ss_pred eeEecccC
Q 036584 909 EWECEDSR 916 (919)
Q Consensus 909 ~l~~~~~~ 916 (919)
.+++++++
T Consensus 525 ~L~l~~N~ 532 (606)
T 3vq2_A 525 TLDCSFNR 532 (606)
T ss_dssp EEECTTSC
T ss_pred EEECCCCc
Confidence 66666543
No 7
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=1.5e-22 Score=232.24 Aligned_cols=319 Identities=17% Similarity=0.164 Sum_probs=202.9
Q ss_pred CCeeEEEEecCCCCccccccCCCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhhh
Q 036584 559 SSCRRQAIYSHSPSYFWLHHGNSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEK 638 (919)
Q Consensus 559 ~~~r~l~l~~~~~~~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~ 638 (919)
..+|.|.+..+....++.-..+++|+.|.+.++. .. .++. +.++++|++|++++ +. +. .++.
T Consensus 46 ~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~------l~-~~~~-~~~l~~L~~L~l~~-n~-----l~---~~~~- 107 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ------LT-DITP-LKNLTKLVDILMNN-NQ-----IA---DITP- 107 (466)
T ss_dssp HTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSC------CC-CCGG-GTTCTTCCEEECCS-SC-----CC---CCGG-
T ss_pred ccccEEecCCCCCccCcchhhhcCCCEEECCCCc------cC-Cchh-hhccccCCEEECCC-Cc-----cc---cChh-
Confidence 5688888886665555432338899999998872 12 2233 78889999999998 77 76 5655
Q ss_pred hcccccceEEeecCCCccccChhhhcCCCCcEEecCCCCCcccccCcccccccccccccc--ccccccCCCCcCcCcccc
Q 036584 639 IGDLIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVELPIEINMMQELRHLIG--NFKGTLPIENLTNLQTLK 716 (919)
Q Consensus 639 i~~L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~L~~L~~--~~~~~~~i~~l~~L~~L~ 716 (919)
++++++|++|+|++|.++.+|. +..+++|++|++++| .+..+|. +..+++|++|.. ......+++.+++|+.|+
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n--~l~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~ 183 (466)
T 1o6v_A 108 LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSN--TISDISA-LSGLTSLQQLSFGNQVTDLKPLANLTTLERLD 183 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEE--EECCCGG-GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEE
T ss_pred hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCC--ccCCChh-hccCCcccEeecCCcccCchhhccCCCCCEEE
Confidence 8889999999999999988876 888999999999988 6777664 777777777732 222233466777777777
Q ss_pred cccccccchhhccCCCCCCeEEeeecCcccc------------------ccccchhhHHhhcCCCcEEEEeecCCCCccC
Q 036584 717 YVQSKSWNKVNTAKLVNLRDLHIEEDEDEWE------------------GETVFSFESIAKLKNLRFLSVKLLDANSFAS 778 (919)
Q Consensus 717 ~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~------------------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 778 (919)
+..+.......+..+++|+.|.++++..... .... ..+..+++|+.|++++ +.+..
T Consensus 184 l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~---n~l~~ 257 (466)
T 1o6v_A 184 ISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI---GTLASLTNLTDLDLAN---NQISN 257 (466)
T ss_dssp CCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCS---SCCCC
T ss_pred CcCCcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc---hhhhcCCCCCEEECCC---Ccccc
Confidence 7666644444566666677766666542100 0000 2334445555555432 22223
Q ss_pred cCCCCCCCCceeEEEceec-CCCCcchhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccccCeeEEEcCCCC
Q 036584 779 LQPLSHCQCLVDLRLSGRM-KKLPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHYVKKLGCRAEGF 857 (919)
Q Consensus 779 ~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~f 857 (919)
+.++..+++|+.|++++|. ..+|. +..+ ++|+.|+|++|.+.+. +.++.+++|+.|+|++|...... ....+
T Consensus 258 ~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l-~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~---~~~~l 330 (466)
T 1o6v_A 258 LAPLSGLTKLTELKLGANQISNISP-LAGL-TALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS---PVSSL 330 (466)
T ss_dssp CGGGTTCTTCSEEECCSSCCCCCGG-GTTC-TTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG---GGGGC
T ss_pred chhhhcCCCCCEEECCCCccCcccc-ccCC-CccCeEEcCCCcccCc--hhhcCCCCCCEEECcCCcCCCch---hhccC
Confidence 3335555666666666653 33332 4444 6777777777766532 23667777777777755443321 13467
Q ss_pred cccceeEEecCCcccEEEccCCcccccceEEccccCccC-CcccccCCCCCCeeEecccC
Q 036584 858 PLLEILQLDADGLVEWQVEEGAMPVLRGLKIAAEIPKLK-IPERLRSVPPPAEWECEDSR 916 (919)
Q Consensus 858 ~~L~~L~l~~~~l~~~~~~~~~~p~L~~L~l~~nC~~l~-lp~~l~~L~~L~~l~~~~~~ 916 (919)
++|+.|+++.|.++.++ ....+++|+.|++++ | .+. ++. +..++.|+.+++++++
T Consensus 331 ~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~-n-~l~~~~~-~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 331 TKLQRLFFYNNKVSDVS-SLANLTNINWLSAGH-N-QISDLTP-LANLTRITQLGLNDQA 386 (466)
T ss_dssp TTCCEEECCSSCCCCCG-GGTTCTTCCEEECCS-S-CCCBCGG-GTTCTTCCEEECCCEE
T ss_pred ccCCEeECCCCccCCch-hhccCCCCCEEeCCC-C-ccCccch-hhcCCCCCEEeccCCc
Confidence 77777777766666552 345677888888876 4 455 433 7778888888877653
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=7.9e-23 Score=247.29 Aligned_cols=298 Identities=15% Similarity=0.174 Sum_probs=174.3
Q ss_pred chhhhccCceEEEEEeccCcccccccccc---------------chhhhhhhc--ccccceEEeecCCCc-cccChhhhc
Q 036584 603 LPLLFERFFLLRVFDVEADLDRESTLMHW---------------SNRLSEKIG--DLIHLKYLGLRNSNI-GILPSSIVK 664 (919)
Q Consensus 603 l~~~~~~~~~LrvL~L~~~~~~~~~~i~~---------------~~~lp~~i~--~L~~Lr~L~L~~~~i-~~LP~~l~~ 664 (919)
+|..+.++++|++|+|++ +. +.. .+.+|..++ +|++|++|+|++|.+ +.+|..+++
T Consensus 440 IP~~l~~L~~L~~L~Ls~-N~-----Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFAN-SP-----FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp ECGGGGGCTTCCEEEEES-CC-----CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred hhHHHhcCCCCCEEECcC-Cc-----CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 555666777777777777 66 551 001666666 777777777777664 666777777
Q ss_pred CCCCcEEecCCCCCc-cc--ccCccccccc-------ccccccc---cc-cccc--CCCCcCcCcccccccccccchhhc
Q 036584 665 LQRLQTLDFSGDVGC-PV--ELPIEINMMQ-------ELRHLIG---NF-KGTL--PIENLTNLQTLKYVQSKSWNKVNT 728 (919)
Q Consensus 665 L~~L~~L~L~~~~~~-~~--~lp~~i~~L~-------~L~~L~~---~~-~~~~--~i~~l~~L~~L~~~~~~~~~~~~l 728 (919)
|++|++|+|++| . +. .+|..+.+++ +|++|.. .. ..|. .++.+++|+.|++..+....+..+
T Consensus 514 L~~L~~L~Ls~N--~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~ 591 (876)
T 4ecn_A 514 LPELQSLNIACN--RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAF 591 (876)
T ss_dssp CSSCCEEECTTC--TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCC
T ss_pred CCCCCEEECcCC--CCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhh
Confidence 777777777776 3 43 3666666555 6666621 11 2333 356666677666666652233356
Q ss_pred cCCCCCCeEEeeecCccccccccchhhHHhhcCC-CcEEEEeecCCCCccCc-----------------------CC---
Q 036584 729 AKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKN-LRFLSVKLLDANSFASL-----------------------QP--- 781 (919)
Q Consensus 729 ~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~-----------------------~~--- 781 (919)
+.+++|+.|.++++... ..+ ..+..+++ |+.|.|+++....++.. +.
T Consensus 592 ~~L~~L~~L~Ls~N~l~---~lp---~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~ 665 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIE---EIP---EDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665 (876)
T ss_dssp CTTSEESEEECCSSCCS---CCC---TTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSS
T ss_pred cCCCcceEEECcCCccc---cch---HHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchh
Confidence 66666666666665421 111 34555555 66666643322111110 00
Q ss_pred -CC--CCCCceeEEEceec-CCCCcchhccCCCcceEEEEccCCCCCCchhhh--------cCCCCCeEEEeeccccCee
Q 036584 782 -LS--HCQCLVDLRLSGRM-KKLPEDMHVFLPNLECLSLSVPYPKEDPMPALE--------MLPNLIILDLHFRCHYVKK 849 (919)
Q Consensus 782 -l~--~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~--------~lp~L~~L~L~~~~~~~~~ 849 (919)
+. .+++|+.|+|++|. ..+|.++...+++|+.|+|++|.+.. .+..+. ++++|+.|+|++|.+. .
T Consensus 666 ~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~-ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~--~ 742 (876)
T 4ecn_A 666 SMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTS-IPENSLKPKDGNYKNTYLLTTIDLRFNKLT--S 742 (876)
T ss_dssp CTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSC-CCTTSSSCTTSCCTTGGGCCEEECCSSCCC--C
T ss_pred hhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCc-cChHHhccccccccccCCccEEECCCCCCc--c
Confidence 01 22356666666653 45666555333777777777777653 322222 2337777777755543 3
Q ss_pred EEEcCC--CCcccceeEEecCCcccEEEccCCcccccceEEccc----cCccC--CcccccCCCCCCeeEecccCC
Q 036584 850 LGCRAE--GFPLLEILQLDADGLVEWQVEEGAMPVLRGLKIAAE----IPKLK--IPERLRSVPPPAEWECEDSRN 917 (919)
Q Consensus 850 ~~~~~~--~f~~L~~L~l~~~~l~~~~~~~~~~p~L~~L~l~~n----C~~l~--lp~~l~~L~~L~~l~~~~~~~ 917 (919)
++.... .+++|+.|+|+.|.++.++.....+++|+.|++++| ++.+. +|..+.++++|+.|++++|..
T Consensus 743 lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 743 LSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp CCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred chHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 333333 677888888887777777666667788888888651 13444 777888888888888887653
No 9
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=1.5e-22 Score=226.89 Aligned_cols=298 Identities=14% Similarity=0.110 Sum_probs=231.3
Q ss_pred CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhh-hhhcccccceEEeecCCCcccc
Q 036584 580 NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLS-EKIGDLIHLKYLGLRNSNIGIL 658 (919)
Q Consensus 580 ~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp-~~i~~L~~Lr~L~L~~~~i~~L 658 (919)
++++|.|.+.++. .....+..+..+++|++|+|++ +. +. .+| ..++.+++|++|+|++|.++.+
T Consensus 44 l~~l~~l~l~~~~------l~~l~~~~~~~l~~L~~L~L~~-n~-----i~---~~~~~~~~~l~~L~~L~L~~n~l~~~ 108 (390)
T 3o6n_A 44 LNNQKIVTFKNST------MRKLPAALLDSFRQVELLNLND-LQ-----IE---EIDTYAFAYAHTIQKLYMGFNAIRYL 108 (390)
T ss_dssp GCCCSEEEEESCE------ESEECTHHHHHCCCCSEEECTT-SC-----CC---EECTTTTTTCTTCCEEECCSSCCCCC
T ss_pred cCCceEEEecCCc------hhhCChhHhcccccCcEEECCC-Cc-----cc---ccChhhccCCCCcCEEECCCCCCCcC
Confidence 7899999998872 2334456678999999999999 77 76 454 5789999999999999999777
Q ss_pred Ch-hhhcCCCCcEEecCCCCCcccccCccc-ccccccccccc---cccc--ccCCCCcCcCcccccccccccchhhccCC
Q 036584 659 PS-SIVKLQRLQTLDFSGDVGCPVELPIEI-NMMQELRHLIG---NFKG--TLPIENLTNLQTLKYVQSKSWNKVNTAKL 731 (919)
Q Consensus 659 P~-~l~~L~~L~~L~L~~~~~~~~~lp~~i-~~L~~L~~L~~---~~~~--~~~i~~l~~L~~L~~~~~~~~~~~~l~~l 731 (919)
|. .+..+++|++|++++| .+..+|..+ .++++|++|.. .... +..++.+++|++|++..+..... .+..+
T Consensus 109 ~~~~~~~l~~L~~L~L~~n--~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l 185 (390)
T 3o6n_A 109 PPHVFQNVPLLTVLVLERN--DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLI 185 (390)
T ss_dssp CTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-CGGGC
T ss_pred CHHHhcCCCCCCEEECCCC--ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-ccccc
Confidence 55 5899999999999999 888999875 78999999943 2222 23378899999998887763222 57778
Q ss_pred CCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCcCCCCCCCCceeEEEceecCCCCcchhccCCCc
Q 036584 732 VNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASLQPLSHCQCLVDLRLSGRMKKLPEDMHVFLPNL 811 (919)
Q Consensus 732 ~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~p~~~~~l~~~L 811 (919)
++|+.|.++.+.. ..+...++|+.|++.++ .+..+ +...+++|+.|++++|.-..+.++..+ ++|
T Consensus 186 ~~L~~L~l~~n~l----------~~~~~~~~L~~L~l~~n---~l~~~-~~~~~~~L~~L~l~~n~l~~~~~l~~l-~~L 250 (390)
T 3o6n_A 186 PSLFHANVSYNLL----------STLAIPIAVEELDASHN---SINVV-RGPVNVELTILKLQHNNLTDTAWLLNY-PGL 250 (390)
T ss_dssp TTCSEEECCSSCC----------SEEECCSSCSEEECCSS---CCCEE-ECCCCSSCCEEECCSSCCCCCGGGGGC-TTC
T ss_pred cccceeecccccc----------cccCCCCcceEEECCCC---eeeec-cccccccccEEECCCCCCcccHHHcCC-CCc
Confidence 9999999988752 22233468999998544 33222 223457999999999864334577777 999
Q ss_pred ceEEEEccCCCCCCchhhhcCCCCCeEEEeeccccCeeEEEcCCCCcccceeEEecCCcccEEEccCCcccccceEEccc
Q 036584 812 ECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHYVKKLGCRAEGFPLLEILQLDADGLVEWQVEEGAMPVLRGLKIAAE 891 (919)
Q Consensus 812 ~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~l~~~~l~~~~~~~~~~p~L~~L~l~~n 891 (919)
++|+|++|.+.+..+..++.+++|+.|+|++|... .++.....+++|+.|+++.|.++.++.....+++|+.|++++
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~- 327 (390)
T 3o6n_A 251 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV--ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDH- 327 (390)
T ss_dssp SEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC--EEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCS-
T ss_pred cEEECCCCcCCCcChhHccccccCCEEECCCCcCc--ccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCC-
Confidence 99999999998777788999999999999976553 345555779999999999888887765566789999999998
Q ss_pred cCccC-CcccccCCCCCCeeEecccC
Q 036584 892 IPKLK-IPERLRSVPPPAEWECEDSR 916 (919)
Q Consensus 892 C~~l~-lp~~l~~L~~L~~l~~~~~~ 916 (919)
+.++ +| +..+++|+.+++++++
T Consensus 328 -N~i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 328 -NSIVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp -SCCCCCC--CCTTCCCSEEECCSSC
T ss_pred -CccceeC--chhhccCCEEEcCCCC
Confidence 4577 76 7788999999998864
No 10
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=3.3e-22 Score=220.39 Aligned_cols=295 Identities=17% Similarity=0.224 Sum_probs=204.7
Q ss_pred CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccC
Q 036584 580 NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILP 659 (919)
Q Consensus 580 ~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP 659 (919)
++++++|.+.++. . ..++. +..+++|++|++++ +. +. .+|. +..+++|++|+|++|.++.+|
T Consensus 43 l~~L~~L~l~~~~-----i--~~~~~-~~~~~~L~~L~l~~-n~-----i~---~~~~-~~~l~~L~~L~L~~n~i~~~~ 104 (347)
T 4fmz_A 43 LESITKLVVAGEK-----V--ASIQG-IEYLTNLEYLNLNG-NQ-----IT---DISP-LSNLVKLTNLYIGTNKITDIS 104 (347)
T ss_dssp HTTCSEEECCSSC-----C--CCCTT-GGGCTTCCEEECCS-SC-----CC---CCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred cccccEEEEeCCc-----c--ccchh-hhhcCCccEEEccC-Cc-----cc---cchh-hhcCCcCCEEEccCCcccCch
Confidence 5566666666652 1 12222 56677777777777 66 55 4554 667777777777777776665
Q ss_pred hhhhcCCCCcEEecCCCCCcccccCccccccccccccccc----cccccCCCCcCcCcccccccccccchhhccCCCCCC
Q 036584 660 SSIVKLQRLQTLDFSGDVGCPVELPIEINMMQELRHLIGN----FKGTLPIENLTNLQTLKYVQSKSWNKVNTAKLVNLR 735 (919)
Q Consensus 660 ~~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~L~~L~~~----~~~~~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~ 735 (919)
.+..+++|++|++++| .+..+|. +..+++|++|... ......+..+++|+.|.+..+.......+..+++|+
T Consensus 105 -~~~~l~~L~~L~l~~n--~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~ 180 (347)
T 4fmz_A 105 -ALQNLTNLRELYLNED--NISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLY 180 (347)
T ss_dssp -GGTTCTTCSEEECTTS--CCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred -HHcCCCcCCEEECcCC--cccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCC
Confidence 4677777777777777 5666665 6667777776321 122333677788888877777644444588889999
Q ss_pred eEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCcCCCCCCCCceeEEEceec-CCCCcchhccCCCcceE
Q 036584 736 DLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASLQPLSHCQCLVDLRLSGRM-KKLPEDMHVFLPNLECL 814 (919)
Q Consensus 736 ~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L 814 (919)
.|+++++... .. ..+..+++|+.|.+.+ +.+.....+..+++|++|++++|. ..+|. +..+ ++|++|
T Consensus 181 ~L~l~~n~l~----~~---~~~~~l~~L~~L~l~~---n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l-~~L~~L 248 (347)
T 4fmz_A 181 SLSLNYNQIE----DI---SPLASLTSLHYFTAYV---NQITDITPVANMTRLNSLKIGNNKITDLSP-LANL-SQLTWL 248 (347)
T ss_dssp EEECTTSCCC----CC---GGGGGCTTCCEEECCS---SCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTC-TTCCEE
T ss_pred EEEccCCccc----cc---ccccCCCccceeeccc---CCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcC-CCCCEE
Confidence 9999887522 12 2367788999999854 344444447778899999999875 44554 5555 999999
Q ss_pred EEEccCCCCCCchhhhcCCCCCeEEEeeccccCeeEEEcCCCCcccceeEEecCCcccEE-EccCCcccccceEEccccC
Q 036584 815 SLSVPYPKEDPMPALEMLPNLIILDLHFRCHYVKKLGCRAEGFPLLEILQLDADGLVEWQ-VEEGAMPVLRGLKIAAEIP 893 (919)
Q Consensus 815 ~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~l~~~~l~~~~-~~~~~~p~L~~L~l~~nC~ 893 (919)
++++|.++. .+.+..+++|+.|++++|..... .....+++|+.|+++.+.++... .....+|+|+.|++++ |+
T Consensus 249 ~l~~n~l~~--~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~ 322 (347)
T 4fmz_A 249 EIGTNQISD--INAVKDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ-NH 322 (347)
T ss_dssp ECCSSCCCC--CGGGTTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCS-SS
T ss_pred ECCCCccCC--ChhHhcCCCcCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccC-Cc
Confidence 999998864 36788999999999997655432 23467899999999977776543 2235689999999998 54
Q ss_pred ccC-CcccccCCCCCCeeEecccC
Q 036584 894 KLK-IPERLRSVPPPAEWECEDSR 916 (919)
Q Consensus 894 ~l~-lp~~l~~L~~L~~l~~~~~~ 916 (919)
++ ++. +..+++|+.+++++++
T Consensus 323 -l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 323 -ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp -CCCCGG-GGGCTTCSEESSSCC-
T ss_pred -cccccC-hhhhhccceeehhhhc
Confidence 66 555 8889999999999865
No 11
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.88 E-value=1.8e-22 Score=245.96 Aligned_cols=264 Identities=22% Similarity=0.195 Sum_probs=176.1
Q ss_pred CCCeeEEEEecCCCC-ccccccC--CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchh
Q 036584 558 ISSCRRQAIYSHSPS-YFWLHHG--NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNR 634 (919)
Q Consensus 558 ~~~~r~l~l~~~~~~-~~~~~~~--~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~ 634 (919)
...+++|.+..+... ..+.... +++|+.|.+.++. .....|..+..++.|++|+|++ |. +.. .
T Consensus 268 l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~------l~~~~p~~~~~l~~L~~L~L~~-n~-----l~~--~ 333 (768)
T 3rgz_A 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH------FYGAVPPFFGSCSLLESLALSS-NN-----FSG--E 333 (768)
T ss_dssp CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE------EEECCCGGGGGCTTCCEEECCS-SE-----EEE--E
T ss_pred cCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc------CCCccchHHhcCCCccEEECCC-Cc-----ccC--c
Confidence 356777777654433 2221111 4778888887772 2335666778888888888888 66 542 5
Q ss_pred hhhh-hcccccceEEeecCCCcc-ccChhhhcCC-CCcEEecCCCCCcccccCccccc--ccccccccc---cc--cccc
Q 036584 635 LSEK-IGDLIHLKYLGLRNSNIG-ILPSSIVKLQ-RLQTLDFSGDVGCPVELPIEINM--MQELRHLIG---NF--KGTL 704 (919)
Q Consensus 635 lp~~-i~~L~~Lr~L~L~~~~i~-~LP~~l~~L~-~L~~L~L~~~~~~~~~lp~~i~~--L~~L~~L~~---~~--~~~~ 704 (919)
+|.. ++++++|++|+|++|.+. .+|..+..+. +|++|++++| .....+|..+.. +++|+.|.. .. ..+.
T Consensus 334 ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~ 412 (768)
T 3rgz_A 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN-NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412 (768)
T ss_dssp CCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSS-EEEEECCTTTTCSTTCCCCEEECCSSEEEEECCG
T ss_pred CCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCC-CcCCCcChhhhhcccCCccEEECCCCccccccCH
Confidence 6655 778888888888888874 7788887776 7888888877 233356666555 667777732 11 2344
Q ss_pred CCCCcCcCccccccccc--ccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCc--C
Q 036584 705 PIENLTNLQTLKYVQSK--SWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASL--Q 780 (919)
Q Consensus 705 ~i~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~ 780 (919)
.++.+++|+.|++..+. ...+..++.+++|+.|.++.+... ...+ ..+..+++|+.|++.++ .+.+. .
T Consensus 413 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~--~~~p---~~~~~l~~L~~L~L~~N---~l~~~~p~ 484 (768)
T 3rgz_A 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE--GEIP---QELMYVKTLETLILDFN---DLTGEIPS 484 (768)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCC--SCCC---GGGGGCTTCCEEECCSS---CCCSCCCG
T ss_pred HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCccc--CcCC---HHHcCCCCceEEEecCC---cccCcCCH
Confidence 47777888888777766 345566777788888888776521 1122 56677788888887543 33222 2
Q ss_pred CCCCCCCceeEEEceec--CCCCcchhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccc
Q 036584 781 PLSHCQCLVDLRLSGRM--KKLPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCH 845 (919)
Q Consensus 781 ~l~~~~~L~~L~L~~~~--~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~ 845 (919)
.+..+++|+.|+|++|. +.+|.|+..+ ++|++|+|++|.+.+..+..++.+++|+.|+|++|.+
T Consensus 485 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRL-ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred HHhcCCCCCEEEccCCccCCcCChHHhcC-CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 25667788888888774 4677777776 8888888888887777777788888888888876544
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=2.5e-22 Score=242.88 Aligned_cols=333 Identities=15% Similarity=0.170 Sum_probs=241.7
Q ss_pred CCCCeeEEEEecCCCCc------------------ccccc---CCCcccEEEEecccccccccccccchhhhccCceEEE
Q 036584 557 VISSCRRQAIYSHSPSY------------------FWLHH---GNSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRV 615 (919)
Q Consensus 557 ~~~~~r~l~l~~~~~~~------------------~~~~~---~~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~Lrv 615 (919)
...+++.|.+..+.... ++... .+++|+.|.+.++. ....+|..+.++++|++
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~------l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP------NMTQLPDFLYDLPELQS 519 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT------TCCSCCGGGGGCSSCCE
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC------CCccChHHHhCCCCCCE
Confidence 34678889998777665 44332 37889999998872 33466788888999999
Q ss_pred EEeccCccccccccccch-hhhhhhcccc-------cceEEeecCCCccccCh--hhhcCCCCcEEecCCCCCcccccCc
Q 036584 616 FDVEADLDRESTLMHWSN-RLSEKIGDLI-------HLKYLGLRNSNIGILPS--SIVKLQRLQTLDFSGDVGCPVELPI 685 (919)
Q Consensus 616 L~L~~~~~~~~~~i~~~~-~lp~~i~~L~-------~Lr~L~L~~~~i~~LP~--~l~~L~~L~~L~L~~~~~~~~~lp~ 685 (919)
|+|++ |.. +. + .+|..++++. +|++|+|++|.+..+|. .++++++|++|+|++| .+..+|
T Consensus 520 L~Ls~-N~~----ls--g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N--~l~~lp- 589 (876)
T 4ecn_A 520 LNIAC-NRG----IS--AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN--KVRHLE- 589 (876)
T ss_dssp EECTT-CTT----SC--HHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS--CCCBCC-
T ss_pred EECcC-CCC----cc--cccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC--Ccccch-
Confidence 99998 531 33 2 4777777776 89999999999988988 8999999999999988 677888
Q ss_pred ccccccccccccc---cc-ccccCCCCcCc-Cccccccccc-ccchhhccCCC--CCCeEEeeecCccccccccchhhHH
Q 036584 686 EINMMQELRHLIG---NF-KGTLPIENLTN-LQTLKYVQSK-SWNKVNTAKLV--NLRDLHIEEDEDEWEGETVFSFESI 757 (919)
Q Consensus 686 ~i~~L~~L~~L~~---~~-~~~~~i~~l~~-L~~L~~~~~~-~~~~~~l~~l~--~L~~L~i~~~~~~~~~~~~~~~~~l 757 (919)
.+..+++|++|.. .. ..+..+..+++ |+.|.+..+. ...+..+..++ +|+.|+++++......... +..+
T Consensus 590 ~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l--~~~l 667 (876)
T 4ecn_A 590 AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI--SCSM 667 (876)
T ss_dssp CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSC--SSCT
T ss_pred hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccc--hhhh
Confidence 7888888888832 22 33445788888 9999888777 22233344443 4888888887632111111 0122
Q ss_pred h--hcCCCcEEEEeecCCCCccCcCC--CCCCCCceeEEEceec-CCCCcchhccC-------CCcceEEEEccCCCCCC
Q 036584 758 A--KLKNLRFLSVKLLDANSFASLQP--LSHCQCLVDLRLSGRM-KKLPEDMHVFL-------PNLECLSLSVPYPKEDP 825 (919)
Q Consensus 758 ~--~l~~L~~L~l~~~~~~~~~~~~~--l~~~~~L~~L~L~~~~-~~~p~~~~~l~-------~~L~~L~L~~~~l~~~~ 825 (919)
. .+++|+.|++++ +.+..++. +..+++|+.|+|++|. ..+|.++.... ++|+.|+|++|.++ ..
T Consensus 668 ~~~~~~~L~~L~Ls~---N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~l 743 (876)
T 4ecn_A 668 DDYKGINASTVTLSY---NEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SL 743 (876)
T ss_dssp TTCCCCCEEEEECCS---SCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CC
T ss_pred ccccCCCcCEEEccC---CcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cc
Confidence 2 335889999854 44433333 3467899999999874 67887766542 28999999999998 56
Q ss_pred chhhh--cCCCCCeEEEeeccccCeeEEEcCCCCcccceeEEec------CCcc-cEEEccCCcccccceEEccccCccC
Q 036584 826 MPALE--MLPNLIILDLHFRCHYVKKLGCRAEGFPLLEILQLDA------DGLV-EWQVEEGAMPVLRGLKIAAEIPKLK 896 (919)
Q Consensus 826 ~~~l~--~lp~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~l~~------~~l~-~~~~~~~~~p~L~~L~l~~nC~~l~ 896 (919)
+..+. .+++|+.|+|++|.+.. ++.....+++|+.|+|+. |.+. .++.....+++|+.|++++ | .+.
T Consensus 744 p~~l~~~~l~~L~~L~Ls~N~L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~-N-~L~ 819 (876)
T 4ecn_A 744 SDDFRATTLPYLSNMDVSYNCFSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS-N-DIR 819 (876)
T ss_dssp CGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCS-S-CCC
T ss_pred hHHhhhccCCCcCEEEeCCCCCCc--cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCC-C-CCC
Confidence 67776 99999999999777654 555667899999999973 3433 4454556799999999998 4 568
Q ss_pred -CcccccCCCCCCeeEecccCC
Q 036584 897 -IPERLRSVPPPAEWECEDSRN 917 (919)
Q Consensus 897 -lp~~l~~L~~L~~l~~~~~~~ 917 (919)
+|..+. ++|+.+++++++.
T Consensus 820 ~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 820 KVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp BCCSCCC--SSSCEEECCSCTT
T ss_pred ccCHhhc--CCCCEEECCCCCC
Confidence 998866 6999999999864
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=2.9e-22 Score=237.10 Aligned_cols=298 Identities=14% Similarity=0.115 Sum_probs=234.4
Q ss_pred CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhh-hhhhcccccceEEeecCCCcccc
Q 036584 580 NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRL-SEKIGDLIHLKYLGLRNSNIGIL 658 (919)
Q Consensus 580 ~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~l-p~~i~~L~~Lr~L~L~~~~i~~L 658 (919)
+++++.|.+.++. .....+..|..+++|++|+|++ +. +. .+ |..++.+++|++|+|++|.|+.+
T Consensus 50 l~~l~~l~l~~~~------l~~lp~~~~~~l~~L~~L~L~~-n~-----l~---~~~~~~~~~l~~L~~L~L~~n~l~~~ 114 (597)
T 3oja_B 50 LNNQKIVTFKNST------MRKLPAALLDSFRQVELLNLND-LQ-----IE---EIDTYAFAYAHTIQKLYMGFNAIRYL 114 (597)
T ss_dssp GCCCSEEEESSCE------ESEECTHHHHHCCCCSEEECTT-SC-----CC---EECTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCceEEEeeCCC------CCCcCHHHHccCCCCcEEECCC-CC-----CC---CCChHHhcCCCCCCEEECCCCcCCCC
Confidence 7889999998872 3345566788999999999999 87 77 44 45899999999999999999777
Q ss_pred Ch-hhhcCCCCcEEecCCCCCcccccCccc-ccccccccccc---ccc--cccCCCCcCcCcccccccccccchhhccCC
Q 036584 659 PS-SIVKLQRLQTLDFSGDVGCPVELPIEI-NMMQELRHLIG---NFK--GTLPIENLTNLQTLKYVQSKSWNKVNTAKL 731 (919)
Q Consensus 659 P~-~l~~L~~L~~L~L~~~~~~~~~lp~~i-~~L~~L~~L~~---~~~--~~~~i~~l~~L~~L~~~~~~~~~~~~l~~l 731 (919)
|+ .++.+++|++|+|++| .+..+|..+ .++++|++|.. ... .+..++.+++|++|++..+..... .+..+
T Consensus 115 ~~~~~~~l~~L~~L~L~~n--~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~l 191 (597)
T 3oja_B 115 PPHVFQNVPLLTVLVLERN--DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLI 191 (597)
T ss_dssp CTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-CGGGC
T ss_pred CHHHHcCCCCCCEEEeeCC--CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-Chhhh
Confidence 66 5799999999999999 888999875 88999999943 222 223488999999999888763222 47778
Q ss_pred CCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCcCCCCCCCCceeEEEceecCCCCcchhccCCCc
Q 036584 732 VNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASLQPLSHCQCLVDLRLSGRMKKLPEDMHVFLPNL 811 (919)
Q Consensus 732 ~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~p~~~~~l~~~L 811 (919)
++|+.|.++++.. ..+...++|+.|+++++. +..+.. ..+++|+.|+|++|.-.-+.++..+ ++|
T Consensus 192 ~~L~~L~l~~n~l----------~~l~~~~~L~~L~ls~n~---l~~~~~-~~~~~L~~L~L~~n~l~~~~~l~~l-~~L 256 (597)
T 3oja_B 192 PSLFHANVSYNLL----------STLAIPIAVEELDASHNS---INVVRG-PVNVELTILKLQHNNLTDTAWLLNY-PGL 256 (597)
T ss_dssp TTCSEEECCSSCC----------SEEECCTTCSEEECCSSC---CCEEEC-SCCSCCCEEECCSSCCCCCGGGGGC-TTC
T ss_pred hhhhhhhcccCcc----------ccccCCchhheeeccCCc---cccccc-ccCCCCCEEECCCCCCCCChhhccC-CCC
Confidence 9999999988742 223344689999985543 322222 2247899999999864446678777 999
Q ss_pred ceEEEEccCCCCCCchhhhcCCCCCeEEEeeccccCeeEEEcCCCCcccceeEEecCCcccEEEccCCcccccceEEccc
Q 036584 812 ECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHYVKKLGCRAEGFPLLEILQLDADGLVEWQVEEGAMPVLRGLKIAAE 891 (919)
Q Consensus 812 ~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~l~~~~l~~~~~~~~~~p~L~~L~l~~n 891 (919)
+.|+|++|.+.+..+..++.+++|+.|+|++|.+. .++.....+|+|+.|+|+.|.+..++.....+++|+.|++++
T Consensus 257 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~- 333 (597)
T 3oja_B 257 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV--ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDH- 333 (597)
T ss_dssp SEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC--EEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCS-
T ss_pred CEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC--CCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCC-
Confidence 99999999998877889999999999999976653 355556779999999999888887766667799999999998
Q ss_pred cCccC-CcccccCCCCCCeeEecccC
Q 036584 892 IPKLK-IPERLRSVPPPAEWECEDSR 916 (919)
Q Consensus 892 C~~l~-lp~~l~~L~~L~~l~~~~~~ 916 (919)
+.+. +| +..+++|+.+++++++
T Consensus 334 -N~l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 334 -NSIVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp -SCCCCCC--CCTTCCCSEEECCSSC
T ss_pred -CCCCCcC--hhhcCCCCEEEeeCCC
Confidence 4566 75 7788999999998864
No 14
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=1e-21 Score=225.44 Aligned_cols=296 Identities=17% Similarity=0.159 Sum_probs=192.1
Q ss_pred CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccC
Q 036584 580 NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILP 659 (919)
Q Consensus 580 ~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP 659 (919)
++++++|.+.++. . ..++. +..+++|++|+|++ +. +. .+|. ++++++|++|++++|.+..+|
T Consensus 45 l~~l~~L~l~~~~-----i--~~l~~-~~~l~~L~~L~Ls~-n~-----l~---~~~~-~~~l~~L~~L~l~~n~l~~~~ 106 (466)
T 1o6v_A 45 LDQVTTLQADRLG-----I--KSIDG-VEYLNNLTQINFSN-NQ-----LT---DITP-LKNLTKLVDILMNNNQIADIT 106 (466)
T ss_dssp HHTCCEEECCSSC-----C--CCCTT-GGGCTTCCEEECCS-SC-----CC---CCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred hccccEEecCCCC-----C--ccCcc-hhhhcCCCEEECCC-Cc-----cC---Cchh-hhccccCCEEECCCCccccCh
Confidence 6789999998872 1 13443 78899999999999 88 77 6765 999999999999999998888
Q ss_pred hhhhcCCCCcEEecCCCCCcccccCcccccccccccccc---ccccccCCCCcCcCcccccccccccchhhccCCCCCCe
Q 036584 660 SSIVKLQRLQTLDFSGDVGCPVELPIEINMMQELRHLIG---NFKGTLPIENLTNLQTLKYVQSKSWNKVNTAKLVNLRD 736 (919)
Q Consensus 660 ~~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~L~~L~~---~~~~~~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~ 736 (919)
. +.++++|++|++++| .+..+|. +.++++|++|.. .......++.+++|+.|.+. +.......+..+++|+.
T Consensus 107 ~-~~~l~~L~~L~L~~n--~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~-~~~~~~~~~~~l~~L~~ 181 (466)
T 1o6v_A 107 P-LANLTNLTGLTLFNN--QITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLKPLANLTTLER 181 (466)
T ss_dssp G-GTTCTTCCEEECCSS--CCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEE-ESCCCCGGGTTCTTCCE
T ss_pred h-hcCCCCCCEEECCCC--CCCCChH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecC-CcccCchhhccCCCCCE
Confidence 7 999999999999999 7888886 899999999943 33334458899999999875 33334455899999999
Q ss_pred EEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCcCCCCCCCCceeEEEceec-CCCCcchhccCCCcceEE
Q 036584 737 LHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASLQPLSHCQCLVDLRLSGRM-KKLPEDMHVFLPNLECLS 815 (919)
Q Consensus 737 L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~ 815 (919)
|+++++... .. ..+..+++|+.|.+.++ .+....++..+++|+.|++++|. ..++ .+..+ ++|++|+
T Consensus 182 L~l~~n~l~----~~---~~l~~l~~L~~L~l~~n---~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l-~~L~~L~ 249 (466)
T 1o6v_A 182 LDISSNKVS----DI---SVLAKLTNLESLIATNN---QISDITPLGILTNLDELSLNGNQLKDIG-TLASL-TNLTDLD 249 (466)
T ss_dssp EECCSSCCC----CC---GGGGGCTTCSEEECCSS---CCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGC-TTCSEEE
T ss_pred EECcCCcCC----CC---hhhccCCCCCEEEecCC---cccccccccccCCCCEEECCCCCcccch-hhhcC-CCCCEEE
Confidence 999988532 12 34667788888887543 33333334556666666666653 2222 34443 5666666
Q ss_pred EEccCCCCCCchhhhcCCCCCeEEEeeccccCeeE-------------------EEcCCCCcccceeEEecCCcccEEEc
Q 036584 816 LSVPYPKEDPMPALEMLPNLIILDLHFRCHYVKKL-------------------GCRAEGFPLLEILQLDADGLVEWQVE 876 (919)
Q Consensus 816 L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~-------------------~~~~~~f~~L~~L~l~~~~l~~~~~~ 876 (919)
+++|.+.+.. .++.+++|+.|++++|....... ......+++|+.|+++.|.++.++.
T Consensus 250 l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~- 326 (466)
T 1o6v_A 250 LANNQISNLA--PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP- 326 (466)
T ss_dssp CCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-
T ss_pred CCCCccccch--hhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh-
Confidence 6666554322 25555555555555443322110 0012334455555555444443321
Q ss_pred cCCcccccceEEccccCccC-CcccccCCCCCCeeEecccC
Q 036584 877 EGAMPVLRGLKIAAEIPKLK-IPERLRSVPPPAEWECEDSR 916 (919)
Q Consensus 877 ~~~~p~L~~L~l~~nC~~l~-lp~~l~~L~~L~~l~~~~~~ 916 (919)
...+++|+.|++++ | .++ ++ .+..+++|+.+++++|+
T Consensus 327 ~~~l~~L~~L~l~~-n-~l~~~~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 327 VSSLTKLQRLFFYN-N-KVSDVS-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp GGGCTTCCEEECCS-S-CCCCCG-GGTTCTTCCEEECCSSC
T ss_pred hccCccCCEeECCC-C-ccCCch-hhccCCCCCEEeCCCCc
Confidence 23455555555554 3 444 42 45566666666666543
No 15
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.87 E-value=3e-22 Score=244.11 Aligned_cols=330 Identities=18% Similarity=0.168 Sum_probs=210.3
Q ss_pred CCeeEEEEecCCCCccccc-cC-CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhh
Q 036584 559 SSCRRQAIYSHSPSYFWLH-HG-NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLS 636 (919)
Q Consensus 559 ~~~r~l~l~~~~~~~~~~~-~~-~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp 636 (919)
..+++|.+..+........ .. +++|+.|.+.++. .........+.+++.|++|+|++ |. +.. .+|
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-----l~~~ip~~~l~~l~~L~~L~Ls~-n~-----l~~--~~p 360 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN-----FSGELPMDTLLKMRGLKVLDLSF-NE-----FSG--ELP 360 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE-----EEEECCHHHHTTCTTCCEEECCS-SE-----EEE--CCC
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc-----ccCcCCHHHHhcCCCCCEEeCcC-Cc-----cCc--ccc
Confidence 6788888875544322212 22 7888888888872 21123334478888888888888 76 552 677
Q ss_pred hhhcccc-cceEEeecCCCc-cccChhhhc--CCCCcEEecCCCCCccc-ccCcccccccccccccc---cc--ccccCC
Q 036584 637 EKIGDLI-HLKYLGLRNSNI-GILPSSIVK--LQRLQTLDFSGDVGCPV-ELPIEINMMQELRHLIG---NF--KGTLPI 706 (919)
Q Consensus 637 ~~i~~L~-~Lr~L~L~~~~i-~~LP~~l~~--L~~L~~L~L~~~~~~~~-~lp~~i~~L~~L~~L~~---~~--~~~~~i 706 (919)
..+.++. +|++|+|++|.+ ..+|..+.. +++|++|++++| .+. .+|..+.++++|+.|.. .. ..+..+
T Consensus 361 ~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 438 (768)
T 3rgz_A 361 ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN--GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438 (768)
T ss_dssp TTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSS--EEEEECCGGGGGCTTCCEEECCSSEEESCCCGGG
T ss_pred HHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCC--ccccccCHHHhcCCCCCEEECcCCcccCcccHHH
Confidence 7777776 788888888777 456666665 677777777777 443 66777777777777732 22 233346
Q ss_pred CCcCcCccccccccc--ccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCc--CCC
Q 036584 707 ENLTNLQTLKYVQSK--SWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASL--QPL 782 (919)
Q Consensus 707 ~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l 782 (919)
+.+++|+.|++..+. ...+..+..+++|+.|+++++.. .... +..+..+++|+.|+++++ .+.+. ..+
T Consensus 439 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l---~~~~--p~~l~~l~~L~~L~L~~N---~l~~~~p~~~ 510 (768)
T 3rgz_A 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL---TGEI--PSGLSNCTNLNWISLSNN---RLTGEIPKWI 510 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC---CSCC--CGGGGGCTTCCEEECCSS---CCCSCCCGGG
T ss_pred hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcc---cCcC--CHHHhcCCCCCEEEccCC---ccCCcCChHH
Confidence 777777777776666 33455667777777777777642 1111 155667777777777433 23221 125
Q ss_pred CCCCCceeEEEceec--CCCCcchhccCCCcceEEEEccCCCCCCchh--------------------------------
Q 036584 783 SHCQCLVDLRLSGRM--KKLPEDMHVFLPNLECLSLSVPYPKEDPMPA-------------------------------- 828 (919)
Q Consensus 783 ~~~~~L~~L~L~~~~--~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~-------------------------------- 828 (919)
..+++|+.|+|++|. +.+|.++..+ ++|+.|+|++|.+.+..|..
T Consensus 511 ~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (768)
T 3rgz_A 511 GRLENLAILKLSNNSFSGNIPAELGDC-RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 589 (768)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGGC-TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCS
T ss_pred hcCCCCCEEECCCCcccCcCCHHHcCC-CCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccc
Confidence 556777777777764 3566666666 77777777777655433322
Q ss_pred --------------------------------------hhcCCCCCeEEEeeccccCeeEEEcCCCCcccceeEEecCCc
Q 036584 829 --------------------------------------LEMLPNLIILDLHFRCHYVKKLGCRAEGFPLLEILQLDADGL 870 (919)
Q Consensus 829 --------------------------------------l~~lp~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~l~~~~l 870 (919)
++.+++|+.|+|++|.+.+ .++...+.+++|+.|+|+.|.+
T Consensus 590 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l 668 (768)
T 3rgz_A 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG-YIPKEIGSMPYLFILNLGHNDI 668 (768)
T ss_dssp SEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBS-CCCGGGGGCTTCCEEECCSSCC
T ss_pred cccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccc-cCCHHHhccccCCEEeCcCCcc
Confidence 2335667777777555433 3344456677777777776666
Q ss_pred c-cEEEccCCcccccceEEccccCccC--CcccccCCCCCCeeEeccc
Q 036584 871 V-EWQVEEGAMPVLRGLKIAAEIPKLK--IPERLRSVPPPAEWECEDS 915 (919)
Q Consensus 871 ~-~~~~~~~~~p~L~~L~l~~nC~~l~--lp~~l~~L~~L~~l~~~~~ 915 (919)
+ .+|...+.+++|+.|++++ ++++ +|..+..++.|+.++++.+
T Consensus 669 ~g~ip~~l~~L~~L~~LdLs~--N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 669 SGSIPDEVGDLRGLNILDLSS--NKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCS--SCCEECCCGGGGGCCCCSEEECCSS
T ss_pred CCCCChHHhCCCCCCEEECCC--CcccCcCChHHhCCCCCCEEECcCC
Confidence 6 4555566777777777776 4555 7777777777777777765
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=2.2e-22 Score=239.48 Aligned_cols=330 Identities=15% Similarity=0.167 Sum_probs=250.8
Q ss_pred CCCCeeEEEEecCCCCc------------------ccccc---CCCcccEEEEecccccccccccccchhhhccCceEEE
Q 036584 557 VISSCRRQAIYSHSPSY------------------FWLHH---GNSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRV 615 (919)
Q Consensus 557 ~~~~~r~l~l~~~~~~~------------------~~~~~---~~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~Lrv 615 (919)
...++|.|.+..+.... ++... .+++|+.|.+.++. ....+|..+.++++|++
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~------l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP------NLTKLPTFLKALPEMQL 277 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT------TCSSCCTTTTTCSSCCE
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc------CCccChHHHhcCCCCCE
Confidence 45689999999777666 44332 37899999999982 34467888999999999
Q ss_pred EEeccCccccccccccch-hhhhhhccc------ccceEEeecCCCccccCh--hhhcCCCCcEEecCCCCCccc-ccCc
Q 036584 616 FDVEADLDRESTLMHWSN-RLSEKIGDL------IHLKYLGLRNSNIGILPS--SIVKLQRLQTLDFSGDVGCPV-ELPI 685 (919)
Q Consensus 616 L~L~~~~~~~~~~i~~~~-~lp~~i~~L------~~Lr~L~L~~~~i~~LP~--~l~~L~~L~~L~L~~~~~~~~-~lp~ 685 (919)
|+|++ +.. +. + .+|..++++ ++|++|+|++|.++.+|. .++++++|++|++++| .+. .+|
T Consensus 278 L~Ls~-n~~----l~--~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N--~l~g~ip- 347 (636)
T 4eco_A 278 INVAC-NRG----IS--GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN--QLEGKLP- 347 (636)
T ss_dssp EECTT-CTT----SC--HHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSC--CCEEECC-
T ss_pred EECcC-CCC----Cc--cccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCC--cCccchh-
Confidence 99999 541 33 3 588888887 999999999999999999 8999999999999999 676 899
Q ss_pred ccccccccccccc---cc-ccccCCCCcCc-Cccccccccc-ccchhhccCC--CCCCeEEeeecCccccccccchhhHH
Q 036584 686 EINMMQELRHLIG---NF-KGTLPIENLTN-LQTLKYVQSK-SWNKVNTAKL--VNLRDLHIEEDEDEWEGETVFSFESI 757 (919)
Q Consensus 686 ~i~~L~~L~~L~~---~~-~~~~~i~~l~~-L~~L~~~~~~-~~~~~~l~~l--~~L~~L~i~~~~~~~~~~~~~~~~~l 757 (919)
.+..+++|+.|.. .. ..+..++.+++ |+.|++..+. ...+..+..+ ++|+.|+++++... ... +..+
T Consensus 348 ~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~---~~~--p~~l 422 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG---SVD--GKNF 422 (636)
T ss_dssp CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTT---TTT--TCSS
T ss_pred hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCC---Ccc--hhhh
Confidence 8999999999942 22 34555888998 9999988887 3233334443 48999999988632 111 1333
Q ss_pred h-------hcCCCcEEEEeecCCCCccCcCC--CCCCCCceeEEEceec-CCCCcchhccCC-------CcceEEEEccC
Q 036584 758 A-------KLKNLRFLSVKLLDANSFASLQP--LSHCQCLVDLRLSGRM-KKLPEDMHVFLP-------NLECLSLSVPY 820 (919)
Q Consensus 758 ~-------~l~~L~~L~l~~~~~~~~~~~~~--l~~~~~L~~L~L~~~~-~~~p~~~~~l~~-------~L~~L~L~~~~ 820 (919)
. .+++|+.|++++ +.+..++. +..+++|++|++++|. ..+|.++..... +|+.|+|++|.
T Consensus 423 ~~~~~~~~~~~~L~~L~Ls~---N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 499 (636)
T 4eco_A 423 DPLDPTPFKGINVSSINLSN---NQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499 (636)
T ss_dssp CTTCSSCCCCCCEEEEECCS---SCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSC
T ss_pred cccccccccCCCCCEEECcC---CccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCc
Confidence 3 567899999854 44444433 4457899999999974 567776655422 99999999999
Q ss_pred CCCCCchhhh--cCCCCCeEEEeeccccCeeEEEcCCCCcccceeEEec------CCc-ccEEEccCCcccccceEEccc
Q 036584 821 PKEDPMPALE--MLPNLIILDLHFRCHYVKKLGCRAEGFPLLEILQLDA------DGL-VEWQVEEGAMPVLRGLKIAAE 891 (919)
Q Consensus 821 l~~~~~~~l~--~lp~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~l~~------~~l-~~~~~~~~~~p~L~~L~l~~n 891 (919)
++ ..+..+. .+++|+.|+|++|.+.. ++.....+++|+.|+|+. |.+ ..++.....+++|++|++++
T Consensus 500 l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~- 575 (636)
T 4eco_A 500 LT-KLSDDFRATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS- 575 (636)
T ss_dssp CC-BCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCS-
T ss_pred CC-ccChhhhhccCCCcCEEECCCCCCCC--cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCC-
Confidence 98 5667776 99999999999777654 555667899999999952 333 34555566799999999998
Q ss_pred cCccC-CcccccCCCCCCeeEecccCC
Q 036584 892 IPKLK-IPERLRSVPPPAEWECEDSRN 917 (919)
Q Consensus 892 C~~l~-lp~~l~~L~~L~~l~~~~~~~ 917 (919)
+.+. +|..+. ++|+.+++++++.
T Consensus 576 -N~l~~ip~~~~--~~L~~L~Ls~N~l 599 (636)
T 4eco_A 576 -NDIRKVNEKIT--PNISVLDIKDNPN 599 (636)
T ss_dssp -SCCCBCCSCCC--TTCCEEECCSCTT
T ss_pred -CcCCccCHhHh--CcCCEEECcCCCC
Confidence 4668 998766 8999999999753
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=9.4e-22 Score=232.38 Aligned_cols=156 Identities=15% Similarity=0.093 Sum_probs=119.0
Q ss_pred hHHhhcCCCcEEEEeecCCCCccCcCC-CCCCCCceeEEEceec-CC-CC-cchhccCCCcceEEEEccCCCCCCchhhh
Q 036584 755 ESIAKLKNLRFLSVKLLDANSFASLQP-LSHCQCLVDLRLSGRM-KK-LP-EDMHVFLPNLECLSLSVPYPKEDPMPALE 830 (919)
Q Consensus 755 ~~l~~l~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~L~~~~-~~-~p-~~~~~l~~~L~~L~L~~~~l~~~~~~~l~ 830 (919)
..+..+++|+.|++.++. +..+.. +..+++|++|++++|. .. .| ..+..+ ++|++|++++|.+....+..++
T Consensus 367 ~~~~~~~~L~~L~l~~n~---l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~ 442 (570)
T 2z63_A 367 QSDFGTTSLKYLDLSFNG---VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL-RNLIYLDISHTHTRVAFNGIFN 442 (570)
T ss_dssp HHHHTCSCCCEEECCSCS---EEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTC-TTCCEEECTTSCCEECCTTTTT
T ss_pred ccccccCccCEEECCCCc---cccccccccccCCCCEEEccCCccccccchhhhhcC-CCCCEEeCcCCcccccchhhhh
Confidence 456677788888875432 222222 6678899999999864 22 33 345555 9999999999998877778899
Q ss_pred cCCCCCeEEEeeccccCeeEEEcCCCCcccceeEEecCCcccE-EEccCCcccccceEEccccCccC-C-cccccCCCCC
Q 036584 831 MLPNLIILDLHFRCHYVKKLGCRAEGFPLLEILQLDADGLVEW-QVEEGAMPVLRGLKIAAEIPKLK-I-PERLRSVPPP 907 (919)
Q Consensus 831 ~lp~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~l~~~~l~~~-~~~~~~~p~L~~L~l~~nC~~l~-l-p~~l~~L~~L 907 (919)
.+++|+.|+|++|......++.....+++|+.|+++.|.++.+ +.....+++|+.|++++ | .++ + |..+..+++|
T Consensus 443 ~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n-~l~~~~~~~~~~l~~L 520 (570)
T 2z63_A 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS-N-QLKSVPDGIFDRLTSL 520 (570)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-S-CCSCCCTTTTTTCTTC
T ss_pred cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCC-C-cCCCCCHHHhhcccCC
Confidence 9999999999977665445566678899999999998888876 33446789999999998 4 677 4 5568999999
Q ss_pred CeeEecccC
Q 036584 908 AEWECEDSR 916 (919)
Q Consensus 908 ~~l~~~~~~ 916 (919)
+.+++++++
T Consensus 521 ~~L~l~~N~ 529 (570)
T 2z63_A 521 QKIWLHTNP 529 (570)
T ss_dssp CEEECCSSC
T ss_pred cEEEecCCc
Confidence 999999864
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=1.5e-21 Score=215.19 Aligned_cols=299 Identities=16% Similarity=0.150 Sum_probs=231.4
Q ss_pred CCCCeeEEEEecCCCCccccccCCCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhh
Q 036584 557 VISSCRRQAIYSHSPSYFWLHHGNSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLS 636 (919)
Q Consensus 557 ~~~~~r~l~l~~~~~~~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp 636 (919)
....+|++.+..+.....+.-..+++|+.|.+.++. .. .++. +..+++|++|++++ +. +. .+|
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~------i~-~~~~-~~~l~~L~~L~L~~-n~-----i~---~~~ 104 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQ------IT-DISP-LSNLVKLTNLYIGT-NK-----IT---DIS 104 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSC------CC-CCGG-GTTCTTCCEEECCS-SC-----CC---CCG
T ss_pred hcccccEEEEeCCccccchhhhhcCCccEEEccCCc------cc-cchh-hhcCCcCCEEEccC-Cc-----cc---Cch
Confidence 346789999987666655432339999999999982 12 2333 88999999999999 88 77 565
Q ss_pred hhhcccccceEEeecCCCccccChhhhcCCCCcEEecCCCCCcccccCcccccccccccccc---ccccccCCCCcCcCc
Q 036584 637 EKIGDLIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVELPIEINMMQELRHLIG---NFKGTLPIENLTNLQ 713 (919)
Q Consensus 637 ~~i~~L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~L~~L~~---~~~~~~~i~~l~~L~ 713 (919)
.+..+++|++|+|++|.+..+|. +..+++|++|++++| .....+..+..+++|++|.. ......+++.+++|+
T Consensus 105 -~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~ 180 (347)
T 4fmz_A 105 -ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGAN--HNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLY 180 (347)
T ss_dssp -GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTC--TTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred -HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCC--CCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCC
Confidence 69999999999999999999987 999999999999999 33344455889999999943 223333488999999
Q ss_pred ccccccccccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCcCCCCCCCCceeEEE
Q 036584 714 TLKYVQSKSWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASLQPLSHCQCLVDLRL 793 (919)
Q Consensus 714 ~L~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L 793 (919)
.|++..+.......+..+++|+.|.+.++... . . ..+..+++|+.|+++++ .+..+..+..+++|++|++
T Consensus 181 ~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~---~-~---~~~~~~~~L~~L~l~~n---~l~~~~~~~~l~~L~~L~l 250 (347)
T 4fmz_A 181 SLSLNYNQIEDISPLASLTSLHYFTAYVNQIT---D-I---TPVANMTRLNSLKIGNN---KITDLSPLANLSQLTWLEI 250 (347)
T ss_dssp EEECTTSCCCCCGGGGGCTTCCEEECCSSCCC---C-C---GGGGGCTTCCEEECCSS---CCCCCGGGTTCTTCCEEEC
T ss_pred EEEccCCcccccccccCCCccceeecccCCCC---C-C---chhhcCCcCCEEEccCC---ccCCCcchhcCCCCCEEEC
Confidence 99999888555555889999999999987522 2 2 23778899999999654 4444455788999999999
Q ss_pred ceec-CCCCcchhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccccCeeEEEcCCCCcccceeEEecCCccc
Q 036584 794 SGRM-KKLPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHYVKKLGCRAEGFPLLEILQLDADGLVE 872 (919)
Q Consensus 794 ~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~l~~~~l~~ 872 (919)
++|. ..+ ..+..+ ++|++|++++|.++.. +.+..+++|+.|++++|..... .+.....+++|+.|+++.|.++.
T Consensus 251 ~~n~l~~~-~~~~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 251 GTNQISDI-NAVKDL-TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNE-DMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp CSSCCCCC-GGGTTC-TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGG-GHHHHHTCTTCSEEECCSSSCCC
T ss_pred CCCccCCC-hhHhcC-CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCc-ChhHhhccccCCEEEccCCcccc
Confidence 9985 344 356666 9999999999998753 6789999999999997655332 12234578999999999777887
Q ss_pred EEEccCCcccccceEEccccC
Q 036584 873 WQVEEGAMPVLRGLKIAAEIP 893 (919)
Q Consensus 873 ~~~~~~~~p~L~~L~l~~nC~ 893 (919)
++. ...+++|++|++++ |+
T Consensus 326 ~~~-~~~l~~L~~L~l~~-N~ 344 (347)
T 4fmz_A 326 IRP-LASLSKMDSADFAN-QV 344 (347)
T ss_dssp CGG-GGGCTTCSEESSSC-C-
T ss_pred ccC-hhhhhccceeehhh-hc
Confidence 643 56799999999998 53
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=9.2e-22 Score=229.52 Aligned_cols=326 Identities=15% Similarity=0.123 Sum_probs=178.1
Q ss_pred CCCeeEEEEecCCCCccccc--cCCCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhh
Q 036584 558 ISSCRRQAIYSHSPSYFWLH--HGNSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRL 635 (919)
Q Consensus 558 ~~~~r~l~l~~~~~~~~~~~--~~~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~l 635 (919)
+.++++|.+..+.....+.. ..+++|++|.+.++. .....|..|..+++|++|+|++ +. +. .+
T Consensus 20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~-N~-----l~---~l 84 (520)
T 2z7x_B 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNR------IQYLDISVFKFNQELEYLDLSH-NK-----LV---KI 84 (520)
T ss_dssp CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC------CCEEEGGGGTTCTTCCEEECCS-SC-----CC---EE
T ss_pred cccccEEECCCCcccccChhhccccccccEEecCCCc------cCCcChHHhhcccCCCEEecCC-Cc-----ee---ec
Confidence 35677777776665544322 227777777777762 2334566677777777777777 66 66 66
Q ss_pred hhhhcccccceEEeecCCCccc--cChhhhcCCCCcEEecCCCCCcccccCccccccccc--ccccc---cc----cccc
Q 036584 636 SEKIGDLIHLKYLGLRNSNIGI--LPSSIVKLQRLQTLDFSGDVGCPVELPIEINMMQEL--RHLIG---NF----KGTL 704 (919)
Q Consensus 636 p~~i~~L~~Lr~L~L~~~~i~~--LP~~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~L--~~L~~---~~----~~~~ 704 (919)
|.. .+++|++|+|++|.++. +|..++++++|++|++++| .+.. ..+..+++| +.|.. .. ..+.
T Consensus 85 p~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n--~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~ 158 (520)
T 2z7x_B 85 SCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT--HLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPE 158 (520)
T ss_dssp ECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES--SCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTT
T ss_pred Ccc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCc--ccch--hhccccccceeeEEEeecccccccccccc
Confidence 655 67777777777777754 5677777777777777777 4443 345556666 55521 11 0011
Q ss_pred C--------------------------CCCcCcCccccccccc--------ccchhhccCCCCCCeEEe-----------
Q 036584 705 P--------------------------IENLTNLQTLKYVQSK--------SWNKVNTAKLVNLRDLHI----------- 739 (919)
Q Consensus 705 ~--------------------------i~~l~~L~~L~~~~~~--------~~~~~~l~~l~~L~~L~i----------- 739 (919)
. +..+++|+.|++..+. ......+..+++|+.|.+
T Consensus 159 ~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~ 238 (520)
T 2z7x_B 159 GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI 238 (520)
T ss_dssp TTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHH
T ss_pred cccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHH
Confidence 1 2234555555544431 011123334444444333
Q ss_pred ----------------eecCccccccccchhhHH-----hhc--------------------------CCCcEEEEeecC
Q 036584 740 ----------------EEDEDEWEGETVFSFESI-----AKL--------------------------KNLRFLSVKLLD 772 (919)
Q Consensus 740 ----------------~~~~~~~~~~~~~~~~~l-----~~l--------------------------~~L~~L~l~~~~ 772 (919)
+++... +..+ ..+ ..+ .+|+.|.+.++.
T Consensus 239 ~~~~~~~~~~L~~L~l~~n~l~--~~~p---~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~ 313 (520)
T 2z7x_B 239 RILQLVWHTTVWYFSISNVKLQ--GQLD---FRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR 313 (520)
T ss_dssp HHHHHHHTSSCSEEEEEEEEEE--SCCC---CCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSC
T ss_pred HHHHHhhhCcccEEEeeccccc--Cccc---cchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCc
Confidence 333210 0000 111 111 223333332211
Q ss_pred CCCccCcCCCCCCCCceeEEEceec--CCCCcchhccCCCcceEEEEccCCCC--CCchhhhcCCCCCeEEEeeccccCe
Q 036584 773 ANSFASLQPLSHCQCLVDLRLSGRM--KKLPEDMHVFLPNLECLSLSVPYPKE--DPMPALEMLPNLIILDLHFRCHYVK 848 (919)
Q Consensus 773 ~~~~~~~~~l~~~~~L~~L~L~~~~--~~~p~~~~~l~~~L~~L~L~~~~l~~--~~~~~l~~lp~L~~L~L~~~~~~~~ 848 (919)
+........+++|++|++++|. +..|.++..+ ++|++|+|++|.+++ ..+..++.+++|+.|+|++|.....
T Consensus 314 ---l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~ 389 (520)
T 2z7x_B 314 ---MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHL-TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD 389 (520)
T ss_dssp ---CCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCC-SSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC
T ss_pred ---cccccchhhCCcccEEEeECCccChhhhhhhccC-CCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc
Confidence 1111112456677777777663 2356666555 677777777776653 2234466677777777765544320
Q ss_pred eEEE-cCCCC----------------------cccceeEEecCCcccEEEccCCcccccceEEccccCccC-Cccc-ccC
Q 036584 849 KLGC-RAEGF----------------------PLLEILQLDADGLVEWQVEEGAMPVLRGLKIAAEIPKLK-IPER-LRS 903 (919)
Q Consensus 849 ~~~~-~~~~f----------------------~~L~~L~l~~~~l~~~~~~~~~~p~L~~L~l~~nC~~l~-lp~~-l~~ 903 (919)
++. ....+ ++|+.|+++.|+++.++.....+++|+.|++++ +.++ +|.. +..
T Consensus 390 -l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~--N~l~~l~~~~~~~ 466 (520)
T 2z7x_B 390 -EKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVAS--NQLKSVPDGIFDR 466 (520)
T ss_dssp -GGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS--SCCCCCCTTTTTT
T ss_pred -cccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCC--CcCCccCHHHhcc
Confidence 110 01122 466666666666666655455677777777776 3566 7765 777
Q ss_pred CCCCCeeEecccC
Q 036584 904 VPPPAEWECEDSR 916 (919)
Q Consensus 904 L~~L~~l~~~~~~ 916 (919)
+++|+.+++++++
T Consensus 467 l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 467 LTSLQKIWLHTNP 479 (520)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCcccEEECcCCC
Confidence 7777777777654
No 20
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=4.3e-21 Score=221.16 Aligned_cols=291 Identities=20% Similarity=0.172 Sum_probs=156.0
Q ss_pred CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccC
Q 036584 580 NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILP 659 (919)
Q Consensus 580 ~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP 659 (919)
.++++.|.+.++. .....+..|.++++|++|+|++ +. +.. ..|..++++++|++|+|++|.++.+|
T Consensus 31 ~~~l~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~-n~-----i~~--~~~~~~~~l~~L~~L~L~~n~l~~~~ 96 (477)
T 2id5_A 31 PTETRLLDLGKNR------IKTLNQDEFASFPHLEELELNE-NI-----VSA--VEPGAFNNLFNLRTLGLRSNRLKLIP 96 (477)
T ss_dssp CTTCSEEECCSSC------CCEECTTTTTTCTTCCEEECTT-SC-----CCE--ECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred CCCCcEEECCCCc------cceECHhHccCCCCCCEEECCC-Cc-----cCE--eChhhhhCCccCCEEECCCCcCCccC
Confidence 5678888888872 2334456788888899999988 77 662 33777888888999999888888887
Q ss_pred hh-hhcCCCCcEEecCCCCCccccc-CccccccccccccccccccccCCCCcCcCccccccccc--ccchhhccCCCCCC
Q 036584 660 SS-IVKLQRLQTLDFSGDVGCPVEL-PIEINMMQELRHLIGNFKGTLPIENLTNLQTLKYVQSK--SWNKVNTAKLVNLR 735 (919)
Q Consensus 660 ~~-l~~L~~L~~L~L~~~~~~~~~l-p~~i~~L~~L~~L~~~~~~~~~i~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~ 735 (919)
.. +.++++|++|+|++| .+..+ |..+..+++|++|. +..+. ......+..+++|+
T Consensus 97 ~~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~-------------------l~~n~l~~~~~~~~~~l~~L~ 155 (477)
T 2id5_A 97 LGVFTGLSNLTKLDISEN--KIVILLDYMFQDLYNLKSLE-------------------VGDNDLVYISHRAFSGLNSLE 155 (477)
T ss_dssp TTSSTTCTTCCEEECTTS--CCCEECTTTTTTCTTCCEEE-------------------ECCTTCCEECTTSSTTCTTCC
T ss_pred cccccCCCCCCEEECCCC--ccccCChhHccccccCCEEE-------------------CCCCccceeChhhccCCCCCC
Confidence 64 688888999999888 55554 34566666666663 22222 11122344444555
Q ss_pred eEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCcCCCCCCCCceeEEEceec--CCCCcchhccCCCcce
Q 036584 736 DLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASLQPLSHCQCLVDLRLSGRM--KKLPEDMHVFLPNLEC 813 (919)
Q Consensus 736 ~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~--~~~p~~~~~l~~~L~~ 813 (919)
.|.++++... ... +..+..+++|+.|.+.++....+ ....+..+++|+.|+++++. ..+|...... .+|++
T Consensus 156 ~L~l~~n~l~---~~~--~~~l~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~ 228 (477)
T 2id5_A 156 QLTLEKCNLT---SIP--TEALSHLHGLIVLRLRHLNINAI-RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG-LNLTS 228 (477)
T ss_dssp EEEEESCCCS---SCC--HHHHTTCTTCCEEEEESCCCCEE-CTTCSCSCTTCCEEEEECCTTCCEECTTTTTT-CCCSE
T ss_pred EEECCCCcCc---ccC--hhHhcccCCCcEEeCCCCcCcEe-ChhhcccCcccceeeCCCCccccccCcccccC-ccccE
Confidence 5555544311 111 13344555555555543222211 11123444555555555432 2333333333 45555
Q ss_pred EEEEccCCCCCCchhhhcCCCCCeEEEeeccccCeeEEEcCCCCcccceeEEecCCcccEEE-ccCCcccccceEEcccc
Q 036584 814 LSLSVPYPKEDPMPALEMLPNLIILDLHFRCHYVKKLGCRAEGFPLLEILQLDADGLVEWQV-EEGAMPVLRGLKIAAEI 892 (919)
Q Consensus 814 L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~l~~~~l~~~~~-~~~~~p~L~~L~l~~nC 892 (919)
|+|++|.++..+...++.+++|+.|+|++|.+.. ........+++|+.|+|+.|.++.+.. ....+++|+.|++++
T Consensus 229 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-- 305 (477)
T 2id5_A 229 LSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST-IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG-- 305 (477)
T ss_dssp EEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCE-ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCS--
T ss_pred EECcCCcccccCHHHhcCccccCeeECCCCcCCc-cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCC--
Confidence 5555555544333445555555555555433221 111112344555555555444444321 223445555555554
Q ss_pred CccC-Ccc-cccCCCCCCeeEeccc
Q 036584 893 PKLK-IPE-RLRSVPPPAEWECEDS 915 (919)
Q Consensus 893 ~~l~-lp~-~l~~L~~L~~l~~~~~ 915 (919)
+.++ +|. .+..+++|+.++++++
T Consensus 306 N~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 306 NQLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp SCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred CcCceeCHhHcCCCcccCEEEccCC
Confidence 2444 333 3445555555555543
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=1.6e-21 Score=223.36 Aligned_cols=336 Identities=15% Similarity=0.071 Sum_probs=236.8
Q ss_pred CCCCeeEEEEecCCCCccccccC--CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchh
Q 036584 557 VISSCRRQAIYSHSPSYFWLHHG--NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNR 634 (919)
Q Consensus 557 ~~~~~r~l~l~~~~~~~~~~~~~--~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~ 634 (919)
.+..+|+|.+..+.......... +++|+.|.+.++ .......+..|..+++|++|+|++ +. +.. .
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-----~~~~~i~~~~~~~l~~L~~L~Ls~-n~-----l~~--~ 94 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQ-----TPGLVIRNNTFRGLSSLIILKLDY-NQ-----FLQ--L 94 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCC-----STTCEECTTTTTTCTTCCEEECTT-CT-----TCE--E
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCC-----cccceECcccccccccCCEEeCCC-Cc-----cCc--c
Confidence 45789999999777665533322 889999999988 222234466788999999999999 77 662 4
Q ss_pred hhhhhcccccceEEeecCCCccc-cChh--hhcCCCCcEEecCCCCCccccc-Ccc-ccccccccccccc---cc--ccc
Q 036584 635 LSEKIGDLIHLKYLGLRNSNIGI-LPSS--IVKLQRLQTLDFSGDVGCPVEL-PIE-INMMQELRHLIGN---FK--GTL 704 (919)
Q Consensus 635 lp~~i~~L~~Lr~L~L~~~~i~~-LP~~--l~~L~~L~~L~L~~~~~~~~~l-p~~-i~~L~~L~~L~~~---~~--~~~ 704 (919)
.|..++++++|++|+|++|.++. .|.. +..+++|++|++++| .+..+ |.. +.++++|++|... .. .+.
T Consensus 95 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 172 (455)
T 3v47_A 95 ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN--NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE 172 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS--BCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT
T ss_pred ChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC--ccCccCcccccCCCCcccEEeCCCCcccccChh
Confidence 47889999999999999999954 5555 889999999999999 67666 544 7889999998432 11 122
Q ss_pred CCCCc--CcCcccccccccccch----------hhccCCCCCCeEEeeecCccccccccchhhHHhh---cCCCcEEEEe
Q 036584 705 PIENL--TNLQTLKYVQSKSWNK----------VNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAK---LKNLRFLSVK 769 (919)
Q Consensus 705 ~i~~l--~~L~~L~~~~~~~~~~----------~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~---l~~L~~L~l~ 769 (919)
.+..+ .+|+.|.+..+..... ..+..+++|+.|+++++... ... +..+.. .++|+.|.+.
T Consensus 173 ~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~---~~~--~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 173 DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK---ESM--AKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp TSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCC---HHH--HHHHHHHTTTCCEEEEECT
T ss_pred hhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCccc---ccc--hhhhhccccccceeeEeec
Confidence 24443 5667776666552111 12345678889999887522 111 133333 3788888886
Q ss_pred ecCCC-------CccCcCC--CC--CCCCceeEEEceec--CCCCcchhccCCCcceEEEEccCCCCCCchhhhcCCCCC
Q 036584 770 LLDAN-------SFASLQP--LS--HCQCLVDLRLSGRM--KKLPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLI 836 (919)
Q Consensus 770 ~~~~~-------~~~~~~~--l~--~~~~L~~L~L~~~~--~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~ 836 (919)
.+... .+..... +. .+++|+.|++++|. ...|.++..+ ++|+.|+|++|.+.+..+..++.+++|+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 326 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF-TDLEQLTLAQNEINKIDDNAFWGLTHLL 326 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccC-CCCCEEECCCCcccccChhHhcCcccCC
Confidence 44211 1111111 11 23689999999874 3467777776 9999999999999877777899999999
Q ss_pred eEEEeeccccCeeEEEcCCCCcccceeEEecCCcccEE-EccCCcccccceEEccccCccC-Ccc-cccCCCCCCeeEec
Q 036584 837 ILDLHFRCHYVKKLGCRAEGFPLLEILQLDADGLVEWQ-VEEGAMPVLRGLKIAAEIPKLK-IPE-RLRSVPPPAEWECE 913 (919)
Q Consensus 837 ~L~L~~~~~~~~~~~~~~~~f~~L~~L~l~~~~l~~~~-~~~~~~p~L~~L~l~~nC~~l~-lp~-~l~~L~~L~~l~~~ 913 (919)
.|+|++|.. ....+.....+++|+.|+++.|.++.+. .....+++|++|++++ +.++ +|. .+..+++|+.++++
T Consensus 327 ~L~Ls~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~--N~l~~~~~~~~~~l~~L~~L~l~ 403 (455)
T 3v47_A 327 KLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT--NQLKSVPDGIFDRLTSLQKIWLH 403 (455)
T ss_dssp EEECCSSCC-CEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS--SCCSCCCTTTTTTCTTCCEEECC
T ss_pred EEECCCCcc-CCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCC--CccccCCHhHhccCCcccEEEcc
Confidence 999996654 2222334577899999999988888763 3456789999999998 5777 665 46889999999998
Q ss_pred ccC
Q 036584 914 DSR 916 (919)
Q Consensus 914 ~~~ 916 (919)
+++
T Consensus 404 ~N~ 406 (455)
T 3v47_A 404 TNP 406 (455)
T ss_dssp SSC
T ss_pred CCC
Confidence 865
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.86 E-value=2.2e-21 Score=230.87 Aligned_cols=336 Identities=14% Similarity=0.048 Sum_probs=189.8
Q ss_pred CCCCeeEEEEecCCCCccccccC--CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchh
Q 036584 557 VISSCRRQAIYSHSPSYFWLHHG--NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNR 634 (919)
Q Consensus 557 ~~~~~r~l~l~~~~~~~~~~~~~--~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~ 634 (919)
.+..+++|.+..+.......... +++|++|.+.++. .....|..|.++++|++|+|++ +. +.. .
T Consensus 31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~Ls~-n~-----l~~--~ 96 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ------IYWIHEDTFQSQHRLDTLVLTA-NP-----LIF--M 96 (606)
T ss_dssp SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCC------CCEECTTTTTTCTTCCEEECTT-CC-----CSE--E
T ss_pred CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCc------cceeChhhccCccccCeeeCCC-Cc-----ccc--c
Confidence 45678888888776665543322 7888888888872 2345567788888888888888 76 652 4
Q ss_pred hhhhhcccccceEEeecCCCcccc-ChhhhcCCCCcEEecCCCCCcccccC-cccccccccccccc---cccc--ccCCC
Q 036584 635 LSEKIGDLIHLKYLGLRNSNIGIL-PSSIVKLQRLQTLDFSGDVGCPVELP-IEINMMQELRHLIG---NFKG--TLPIE 707 (919)
Q Consensus 635 lp~~i~~L~~Lr~L~L~~~~i~~L-P~~l~~L~~L~~L~L~~~~~~~~~lp-~~i~~L~~L~~L~~---~~~~--~~~i~ 707 (919)
.|..++++++|++|+|++|.++.+ |..++++++|++|++++| .+..++ ..+..+++|++|.. .... +..++
T Consensus 97 ~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 174 (606)
T 3t6q_A 97 AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN--HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS 174 (606)
T ss_dssp CTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS--CCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHH
T ss_pred ChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCC--cccccCcccccCCcccCEEEcccCcccccChhhhh
Confidence 467788888888888888888776 567888888888888888 666653 23444888888842 2221 22266
Q ss_pred CcCcCc--cccccccc-ccchhhccCCCCCCeEEeeecCc----------------------------------------
Q 036584 708 NLTNLQ--TLKYVQSK-SWNKVNTAKLVNLRDLHIEEDED---------------------------------------- 744 (919)
Q Consensus 708 ~l~~L~--~L~~~~~~-~~~~~~l~~l~~L~~L~i~~~~~---------------------------------------- 744 (919)
.+++|+ +|++..+. ...........+|+.|.+..+..
T Consensus 175 ~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~ 254 (606)
T 3t6q_A 175 SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM 254 (606)
T ss_dssp TTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGS
T ss_pred hhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcC
Confidence 777777 56555554 11111112222333333332210
Q ss_pred ---------cccccccchhhHHhhcCCCcEEEEeecCCCCccCcC-CCCCCCCceeEEEceec-CC-CCcchhccCCCcc
Q 036584 745 ---------EWEGETVFSFESIAKLKNLRFLSVKLLDANSFASLQ-PLSHCQCLVDLRLSGRM-KK-LPEDMHVFLPNLE 812 (919)
Q Consensus 745 ---------~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~l~~~~~L~~L~L~~~~-~~-~p~~~~~l~~~L~ 812 (919)
....... +..+..+++|+.|+++++ .+..++ .+..+++|++|++++|. .. .|..+..+ ++|+
T Consensus 255 ~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n---~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~ 328 (606)
T 3t6q_A 255 SVESINLQKHYFFNIS--SNTFHCFSGLQELDLTAT---HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNF-PSLT 328 (606)
T ss_dssp EEEEEECTTCCCSSCC--TTTTTTCTTCSEEECTTS---CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGC-TTCS
T ss_pred ceeEEEeecCccCccC--HHHhccccCCCEEeccCC---ccCCCChhhcccccCCEEECccCCcCcCchhhhhcc-CcCC
Confidence 0000011 123445555555555332 222221 24445566666666543 22 23344444 6666
Q ss_pred eEEEEccCCCCCC-chhhhcCCCCCeEEEeeccccCeeE-EEcCCCCcccceeEEecCCcccEEE-ccCCcccccceEEc
Q 036584 813 CLSLSVPYPKEDP-MPALEMLPNLIILDLHFRCHYVKKL-GCRAEGFPLLEILQLDADGLVEWQV-EEGAMPVLRGLKIA 889 (919)
Q Consensus 813 ~L~L~~~~l~~~~-~~~l~~lp~L~~L~L~~~~~~~~~~-~~~~~~f~~L~~L~l~~~~l~~~~~-~~~~~p~L~~L~l~ 889 (919)
+|++++|.+.... ...++.+++|+.|++++|....... ......+++|++|+++.+.+..+.. ....+++|+.|+++
T Consensus 329 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 408 (606)
T 3t6q_A 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408 (606)
T ss_dssp EEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECT
T ss_pred EEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECC
Confidence 6666666554322 2235566666666666444322110 1234556666777666555554422 23456677777776
Q ss_pred cccCccC--Ccc-cccCCCCCCeeEecccC
Q 036584 890 AEIPKLK--IPE-RLRSVPPPAEWECEDSR 916 (919)
Q Consensus 890 ~nC~~l~--lp~-~l~~L~~L~~l~~~~~~ 916 (919)
+ | .+. .|. .+..+++|+.++++++.
T Consensus 409 ~-n-~l~~~~~~~~~~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 409 F-T-RLKVKDAQSPFQNLHLLKVLNLSHSL 436 (606)
T ss_dssp T-C-CEECCTTCCTTTTCTTCCEEECTTCC
T ss_pred C-C-cCCCcccchhhhCcccCCEEECCCCc
Confidence 6 3 333 333 36777777777777653
No 23
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=1.6e-21 Score=231.98 Aligned_cols=158 Identities=14% Similarity=0.108 Sum_probs=121.8
Q ss_pred hHHhhcCCCcEEEEeecCCCCccCcCCCCCCCCceeEEEceec--CCCCcchhccCCCcceEEEEccCCCCC-Cchhhhc
Q 036584 755 ESIAKLKNLRFLSVKLLDANSFASLQPLSHCQCLVDLRLSGRM--KKLPEDMHVFLPNLECLSLSVPYPKED-PMPALEM 831 (919)
Q Consensus 755 ~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~--~~~p~~~~~l~~~L~~L~L~~~~l~~~-~~~~l~~ 831 (919)
..+..+++|+.|++.++..........+..+++|+.|++++|. ...|..+..+ ++|++|+|++|.+.+. .+..++.
T Consensus 393 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~ 471 (606)
T 3vq2_A 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL-TSLNTLKMAGNSFKDNTLSNVFAN 471 (606)
T ss_dssp CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTC-TTCCEEECTTCEEGGGEECSCCTT
T ss_pred hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCC-CCCCEEECCCCcCCCcchHHhhcc
Confidence 4567789999999854322222112346778999999999875 3467777777 9999999999998763 5677899
Q ss_pred CCCCCeEEEeeccccCeeEEEcCCCCcccceeEEecCCcccEE-EccCCcccccceEEccccCccC-CcccccCCC-CCC
Q 036584 832 LPNLIILDLHFRCHYVKKLGCRAEGFPLLEILQLDADGLVEWQ-VEEGAMPVLRGLKIAAEIPKLK-IPERLRSVP-PPA 908 (919)
Q Consensus 832 lp~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~l~~~~l~~~~-~~~~~~p~L~~L~l~~nC~~l~-lp~~l~~L~-~L~ 908 (919)
+++|+.|+|++|... ...+.....+++|++|+++.|.++.+. .....+++|+.|++++ +.++ +|..+..++ +|+
T Consensus 472 l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~--N~l~~~p~~~~~l~~~L~ 548 (606)
T 3vq2_A 472 TTNLTFLDLSKCQLE-QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF--NRIETSKGILQHFPKSLA 548 (606)
T ss_dssp CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTT--SCCCCEESCGGGSCTTCC
T ss_pred CCCCCEEECCCCcCC-ccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCC--CcCcccCHhHhhhcccCc
Confidence 999999999966543 222334578899999999988888774 3456789999999998 4688 999899997 599
Q ss_pred eeEecccC
Q 036584 909 EWECEDSR 916 (919)
Q Consensus 909 ~l~~~~~~ 916 (919)
.+++++++
T Consensus 549 ~l~l~~N~ 556 (606)
T 3vq2_A 549 FFNLTNNS 556 (606)
T ss_dssp EEECCSCC
T ss_pred EEEccCCC
Confidence 99998865
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=3.7e-21 Score=226.40 Aligned_cols=116 Identities=15% Similarity=0.036 Sum_probs=70.3
Q ss_pred eEEEEecCCCCccccccCCCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhhhhcc
Q 036584 562 RRQAIYSHSPSYFWLHHGNSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGD 641 (919)
Q Consensus 562 r~l~l~~~~~~~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~ 641 (919)
+++.+..+....++. ...++++.|.+.++. .....+..|..+++|++|+|++ +. +.. ..|..+++
T Consensus 34 ~~l~ls~~~L~~ip~-~~~~~L~~L~Ls~N~------i~~~~~~~~~~l~~L~~L~Ls~-N~-----l~~--~~~~~~~~ 98 (562)
T 3a79_B 34 SMVDYSNRNLTHVPK-DLPPRTKALSLSQNS------ISELRMPDISFLSELRVLRLSH-NR-----IRS--LDFHVFLF 98 (562)
T ss_dssp CEEECTTSCCCSCCT-TSCTTCCEEECCSSC------CCCCCGGGTTTCTTCCEEECCS-CC-----CCE--ECTTTTTT
T ss_pred cEEEcCCCCCccCCC-CCCCCcCEEECCCCC------ccccChhhhccCCCccEEECCC-CC-----CCc--CCHHHhCC
Confidence 555555544444442 224667777776662 2334445666677777777776 55 551 22555666
Q ss_pred cccceEEeecCCCccccChhhhcCCCCcEEecCCCCCcccccC--cccccccccccc
Q 036584 642 LIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVELP--IEINMMQELRHL 696 (919)
Q Consensus 642 L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~lp--~~i~~L~~L~~L 696 (919)
+++|++|+|++|.|+.+|.. .+++|++|++++| .+..+| ..+.++++|++|
T Consensus 99 l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N--~l~~l~~p~~~~~l~~L~~L 151 (562)
T 3a79_B 99 NQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFN--DFDVLPVCKEFGNLTKLTFL 151 (562)
T ss_dssp CTTCCEEECTTSCCCEECSC--CCTTCSEEECCSS--CCSBCCCCGGGGGCTTCCEE
T ss_pred CCCCCEEECCCCcCCccCcc--ccccCCEEECCCC--CccccCchHhhcccCcccEE
Confidence 77777777777777666665 6677777777776 555543 566666777766
No 25
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=7.3e-21 Score=226.41 Aligned_cols=261 Identities=19% Similarity=0.186 Sum_probs=117.9
Q ss_pred cceEEeecCCCccccChh-hhcCCCCcEEecCCCCCcccccCcccccccccccccc---ccc--cccCCCCcCcCccccc
Q 036584 644 HLKYLGLRNSNIGILPSS-IVKLQRLQTLDFSGDVGCPVELPIEINMMQELRHLIG---NFK--GTLPIENLTNLQTLKY 717 (919)
Q Consensus 644 ~Lr~L~L~~~~i~~LP~~-l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~L~~L~~---~~~--~~~~i~~l~~L~~L~~ 717 (919)
+|++|++++|.++.+|.. +..+++|++|++++| .+..+|..+..+++|++|.. ... .+..++.+++|++|.+
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTAT--HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS--CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCC--ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence 445555555555444432 555556666666655 45555555555555555521 111 1223455555555555
Q ss_pred ccccc---cchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCcCCCCCCCCceeEEEc
Q 036584 718 VQSKS---WNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASLQPLSHCQCLVDLRLS 794 (919)
Q Consensus 718 ~~~~~---~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~ 794 (919)
..+.. .....+..+++|+.|+++++....... .+..+..+++|+.|++.++....+ ....+..+++|++|+++
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~ 408 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDC---CNLQLRNLSHLQSLNLSYNEPLSL-KTEAFKECPQLELLDLA 408 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEE---STTTTTTCTTCCEEECCSCSCEEE-CTTTTTTCTTCSEEECT
T ss_pred CCCCcccccchhhhhccCcCCEEECCCCccccccC---cchhcccCCCCCEEECCCCcCCcC-CHHHhcCCccCCeEECC
Confidence 54431 112224555555555555543210000 013344555555555532211111 11124445555555555
Q ss_pred eec--CCCC-cchhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccccCeeEE--EcCCCCcccceeEEecCC
Q 036584 795 GRM--KKLP-EDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHYVKKLG--CRAEGFPLLEILQLDADG 869 (919)
Q Consensus 795 ~~~--~~~p-~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~--~~~~~f~~L~~L~l~~~~ 869 (919)
+|. ...| .++..+ ++|+.|++++|.+....+..++.+++|+.|+|++|.+....+. .....+++|+.|+++.+.
T Consensus 409 ~n~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~ 487 (606)
T 3t6q_A 409 FTRLKVKDAQSPFQNL-HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487 (606)
T ss_dssp TCCEECCTTCCTTTTC-TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC
T ss_pred CCcCCCcccchhhhCc-ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc
Confidence 543 1122 223333 5555555555555444444555555555555554443322211 112344555555555444
Q ss_pred cccEE-EccCCcccccceEEccccCccC--CcccccCCCCCCeeEecc
Q 036584 870 LVEWQ-VEEGAMPVLRGLKIAAEIPKLK--IPERLRSVPPPAEWECED 914 (919)
Q Consensus 870 l~~~~-~~~~~~p~L~~L~l~~nC~~l~--lp~~l~~L~~L~~l~~~~ 914 (919)
++.++ .....+++|+.|++++ | .++ .|..+.+++.| .+++++
T Consensus 488 l~~~~~~~~~~l~~L~~L~Ls~-N-~l~~~~~~~l~~l~~L-~L~L~~ 532 (606)
T 3t6q_A 488 LSSIDQHAFTSLKMMNHVDLSH-N-RLTSSSIEALSHLKGI-YLNLAS 532 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECCS-S-CCCGGGGGGGTTCCSC-EEECCS
T ss_pred cCccChhhhccccCCCEEECCC-C-ccCcCChhHhCccccc-EEECcC
Confidence 44432 1223455555555554 2 333 44445555555 444444
No 26
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.84 E-value=2.6e-20 Score=229.35 Aligned_cols=334 Identities=19% Similarity=0.124 Sum_probs=214.6
Q ss_pred CCCCeeEEEEecCCCCccccccC--CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchh
Q 036584 557 VISSCRRQAIYSHSPSYFWLHHG--NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNR 634 (919)
Q Consensus 557 ~~~~~r~l~l~~~~~~~~~~~~~--~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~ 634 (919)
.+..+|+|.+..+.......... +++|+.|.+.++ .......+..|.++++|++|+|++ |. +.. .
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n-----~~~~~i~~~~f~~L~~L~~L~Ls~-N~-----l~~--~ 88 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQ-----YTPLTIDKEAFRNLPNLRILDLGS-SK-----IYF--L 88 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTT-----CCCCEECTTTTSSCTTCCEEECTT-CC-----CCE--E
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCC-----CCccccCHHHhcCCCCCCEEECCC-Cc-----Ccc--c
Confidence 56789999999777765543332 899999999988 333334477889999999999999 77 762 4
Q ss_pred hhhhhcccccceEEeecCCCccc-cChh--hhcCCCCcEEecCCCCCcccccC--ccccccccccccccc---cc--ccc
Q 036584 635 LSEKIGDLIHLKYLGLRNSNIGI-LPSS--IVKLQRLQTLDFSGDVGCPVELP--IEINMMQELRHLIGN---FK--GTL 704 (919)
Q Consensus 635 lp~~i~~L~~Lr~L~L~~~~i~~-LP~~--l~~L~~L~~L~L~~~~~~~~~lp--~~i~~L~~L~~L~~~---~~--~~~ 704 (919)
.|..++++.+|++|+|++|.+.. +|.. +.+|++|++|+|++| .+..++ ..+.+|++|++|... .. .+.
T Consensus 89 ~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N--~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~ 166 (844)
T 3j0a_A 89 HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN--QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH 166 (844)
T ss_dssp CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC--CCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG
T ss_pred CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC--cccccccchhHhhCCCCCEEECCCCcCCeeCHH
Confidence 48889999999999999999954 6665 899999999999999 665553 468899999998421 11 122
Q ss_pred CCCCc--CcCccccccccc--ccchhhccCCCC------CCeEEeeecCcccccc-cc----------------------
Q 036584 705 PIENL--TNLQTLKYVQSK--SWNKVNTAKLVN------LRDLHIEEDEDEWEGE-TV---------------------- 751 (919)
Q Consensus 705 ~i~~l--~~L~~L~~~~~~--~~~~~~l~~l~~------L~~L~i~~~~~~~~~~-~~---------------------- 751 (919)
.++.+ ++|+.|.+..+. ......++.+.+ |+.|+++++....... ..
T Consensus 167 ~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~ 246 (844)
T 3j0a_A 167 ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246 (844)
T ss_dssp GGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS
T ss_pred HcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc
Confidence 34444 677777776665 222223333333 7777777663110000 00
Q ss_pred --------chhhHHhh--cCCCcEEEEeecCCCCccCc--CCCCCCCCceeEEEceec-CC-CCcchhccCCCcceEEEE
Q 036584 752 --------FSFESIAK--LKNLRFLSVKLLDANSFASL--QPLSHCQCLVDLRLSGRM-KK-LPEDMHVFLPNLECLSLS 817 (919)
Q Consensus 752 --------~~~~~l~~--l~~L~~L~l~~~~~~~~~~~--~~l~~~~~L~~L~L~~~~-~~-~p~~~~~l~~~L~~L~L~ 817 (919)
.....+.. .++|+.|+++++ .+..+ ..+..+++|+.|+|++|. .. .|..+..+ ++|++|+|+
T Consensus 247 ~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n---~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls 322 (844)
T 3j0a_A 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHG---FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGL-DNLQVLNLS 322 (844)
T ss_dssp SSCSSSTTGGGTTTTTTTTSCCCEEECTTC---CCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTC-SSCCEEEEE
T ss_pred ccccccCCCChhhhhccccCCccEEECCCC---cccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCC-CCCCEEECC
Confidence 00011112 256777776432 22222 225667788888887764 22 34455555 788888888
Q ss_pred ccCCCCCCchhhhcCCCCCeEEEeeccccCeeEEEcCCCCcccceeEEecCCcccEEEccCCcccccceEEccccCccC-
Q 036584 818 VPYPKEDPMPALEMLPNLIILDLHFRCHYVKKLGCRAEGFPLLEILQLDADGLVEWQVEEGAMPVLRGLKIAAEIPKLK- 896 (919)
Q Consensus 818 ~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~l~~~~l~~~~~~~~~~p~L~~L~l~~nC~~l~- 896 (919)
+|.+....+..++.+++|+.|+|++|..... .......+++|+.|+++.|.++.++ .+|+|+.|.+++ +.+.
T Consensus 323 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~i~----~~~~L~~L~l~~--N~l~~ 395 (844)
T 3j0a_A 323 YNLLGELYSSNFYGLPKVAYIDLQKNHIAII-QDQTFKFLEKLQTLDLRDNALTTIH----FIPSIPDIFLSG--NKLVT 395 (844)
T ss_dssp SCCCSCCCSCSCSSCTTCCEEECCSCCCCCC-CSSCSCSCCCCCEEEEETCCSCCCS----SCCSCSEEEEES--CCCCC
T ss_pred CCCCCccCHHHhcCCCCCCEEECCCCCCCcc-ChhhhcCCCCCCEEECCCCCCCccc----CCCCcchhccCC--CCccc
Confidence 8877766667777888888888875544221 1223456778888888866666432 266677777665 3333
Q ss_pred Ccc----------------------cccCCCCCCeeEecccC
Q 036584 897 IPE----------------------RLRSVPPPAEWECEDSR 916 (919)
Q Consensus 897 lp~----------------------~l~~L~~L~~l~~~~~~ 916 (919)
+|. .+..+++|+.+++++++
T Consensus 396 l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~ 437 (844)
T 3j0a_A 396 LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR 437 (844)
T ss_dssp CCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCC
T ss_pred ccccccccceeecccCccccCchhhhhhcCCccceeeCCCCc
Confidence 432 23467788888887754
No 27
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.84 E-value=8.7e-21 Score=222.92 Aligned_cols=171 Identities=18% Similarity=0.171 Sum_probs=124.4
Q ss_pred CCCCeeEEEEecCCCCcccccc--CCCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchh
Q 036584 557 VISSCRRQAIYSHSPSYFWLHH--GNSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNR 634 (919)
Q Consensus 557 ~~~~~r~l~l~~~~~~~~~~~~--~~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~ 634 (919)
.+..+++|.+..+......... .+++|+.|.+.++. .....+..|..+++|++|+|++ +. +. .
T Consensus 24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~Ls~-n~-----l~---~ 88 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR------INTIEGDAFYSLGSLEHLDLSD-NH-----LS---S 88 (549)
T ss_dssp CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC------CCEECTTTTTTCTTCCEEECTT-SC-----CC---S
T ss_pred CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCC------cCccChhhccccccCCEEECCC-Cc-----cC---c
Confidence 3468999999977766554332 28999999999882 3345567788999999999999 87 76 4
Q ss_pred hh-hhhcccccceEEeecCCCccc--cChhhhcCCCCcEEecCCCCCcccccCc-ccccccccccccc---cc--ccccC
Q 036584 635 LS-EKIGDLIHLKYLGLRNSNIGI--LPSSIVKLQRLQTLDFSGDVGCPVELPI-EINMMQELRHLIG---NF--KGTLP 705 (919)
Q Consensus 635 lp-~~i~~L~~Lr~L~L~~~~i~~--LP~~l~~L~~L~~L~L~~~~~~~~~lp~-~i~~L~~L~~L~~---~~--~~~~~ 705 (919)
+| ..++++++|++|+|++|.++. .|..++++++|++|++++| ..+..+|. .+.++++|++|.. .. ..+..
T Consensus 89 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n-~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 167 (549)
T 2z81_A 89 LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV-ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167 (549)
T ss_dssp CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEES-SSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCC-ccccccCHhhhhcccccCeeeccCCcccccChhh
Confidence 54 459999999999999999974 4678999999999999998 33677774 7888999999842 22 23444
Q ss_pred CCCcCcCcccccccccccch--hhccCCCCCCeEEeeecC
Q 036584 706 IENLTNLQTLKYVQSKSWNK--VNTAKLVNLRDLHIEEDE 743 (919)
Q Consensus 706 i~~l~~L~~L~~~~~~~~~~--~~l~~l~~L~~L~i~~~~ 743 (919)
++.+++|++|.+..+..... ..+..+++|+.|+++++.
T Consensus 168 l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 168 LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp TTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCB
T ss_pred hhccccCceEecccCcccccchhhHhhcccccEEEccCCc
Confidence 77788888877666552211 123456677777776654
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=4.7e-20 Score=209.82 Aligned_cols=269 Identities=18% Similarity=0.214 Sum_probs=128.0
Q ss_pred hccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccChhhhcCCCCcEEecCCCCCcccccCcc
Q 036584 607 FERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVELPIE 686 (919)
Q Consensus 607 ~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~~ 686 (919)
+..+++|++|+|++ +. +. .+| ++.+++|++|+|++|.++.+| ++.+++|++|++++| .+..+|
T Consensus 60 l~~l~~L~~L~Ls~-n~-----l~---~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N--~l~~l~-- 122 (457)
T 3bz5_A 60 IEKLTGLTKLICTS-NN-----IT---TLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTN--KLTKLD-- 122 (457)
T ss_dssp GGGCTTCSEEECCS-SC-----CS---CCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSS--CCSCCC--
T ss_pred hcccCCCCEEEccC-Cc-----CC---eEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCC--cCCeec--
Confidence 45555556666655 55 44 343 555555666666655555553 555555666666555 444444
Q ss_pred cccccccccccc---ccccccCCCCcCcCcccccccccccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCC
Q 036584 687 INMMQELRHLIG---NFKGTLPIENLTNLQTLKYVQSKSWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNL 763 (919)
Q Consensus 687 i~~L~~L~~L~~---~~~~~~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L 763 (919)
+..+++|++|.. .... .+++.+++|+.|++..+.......+..+++|+.|+++++... . . . +..+++|
T Consensus 123 ~~~l~~L~~L~l~~N~l~~-l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~---~-l---~-l~~l~~L 193 (457)
T 3bz5_A 123 VSQNPLLTYLNCARNTLTE-IDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKIT---E-L---D-VSQNKLL 193 (457)
T ss_dssp CTTCTTCCEEECTTSCCSC-CCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCC---C-C---C-CTTCTTC
T ss_pred CCCCCcCCEEECCCCccce-eccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccc---e-e---c-cccCCCC
Confidence 555555555521 1111 235555566666555553221224555566666666655321 0 1 1 3445566
Q ss_pred cEEEEeecCCCCccCcCCCCCCCCceeEEEceec-CCCCcchhccCCCcceEEEEccCCCCCCchhhhcCC-------CC
Q 036584 764 RFLSVKLLDANSFASLQPLSHCQCLVDLRLSGRM-KKLPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLP-------NL 835 (919)
Q Consensus 764 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp-------~L 835 (919)
+.|.+.+ +.+..+ .+..+++|+.|++++|. ..+| +..+ ++|+.|++++|.+++.++..+..+. +|
T Consensus 194 ~~L~l~~---N~l~~~-~l~~l~~L~~L~Ls~N~l~~ip--~~~l-~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L 266 (457)
T 3bz5_A 194 NRLNCDT---NNITKL-DLNQNIQLTFLDCSSNKLTEID--VTPL-TQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDL 266 (457)
T ss_dssp CEEECCS---SCCSCC-CCTTCTTCSEEECCSSCCSCCC--CTTC-TTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCC
T ss_pred CEEECcC---CcCCee-ccccCCCCCEEECcCCcccccC--cccc-CCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCC
Confidence 6666532 222222 24555666666666553 3344 3333 6666666666665543322222221 22
Q ss_pred CeEEEeeccccCeeEEEcCCCCcccceeEEe-cCCcccEEEc--------cCCcccccceEEccccCccC-CcccccCCC
Q 036584 836 IILDLHFRCHYVKKLGCRAEGFPLLEILQLD-ADGLVEWQVE--------EGAMPVLRGLKIAAEIPKLK-IPERLRSVP 905 (919)
Q Consensus 836 ~~L~L~~~~~~~~~~~~~~~~f~~L~~L~l~-~~~l~~~~~~--------~~~~p~L~~L~l~~nC~~l~-lp~~l~~L~ 905 (919)
+.|++++|... ..++ .+.+++|+.|+++ +..+..++.. ...+|+|+.|++++ ++++ +| +.+++
T Consensus 267 ~~L~l~~n~~~-~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~--N~l~~l~--l~~l~ 339 (457)
T 3bz5_A 267 LEIDLTHNTQL-IYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNN--TELTELD--VSHNT 339 (457)
T ss_dssp SCCCCTTCTTC-CEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTT--CCCSCCC--CTTCT
T ss_pred CEEECCCCccC-Cccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCC--Ccccccc--cccCC
Confidence 23333322211 1122 2445666666666 4333333321 12234444444443 3344 42 55566
Q ss_pred CCCeeEeccc
Q 036584 906 PPAEWECEDS 915 (919)
Q Consensus 906 ~L~~l~~~~~ 915 (919)
.|+.++++++
T Consensus 340 ~L~~L~l~~N 349 (457)
T 3bz5_A 340 KLKSLSCVNA 349 (457)
T ss_dssp TCSEEECCSS
T ss_pred cCcEEECCCC
Confidence 6666666553
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.83 E-value=2.2e-20 Score=209.22 Aligned_cols=276 Identities=15% Similarity=0.146 Sum_probs=220.1
Q ss_pred cCceEEEEEeccCccccccccccchhhhhh-hcccccceEEeecCCCccccCh-hhhcCCCCcEEecCCCCCcccccCc-
Q 036584 609 RFFLLRVFDVEADLDRESTLMHWSNRLSEK-IGDLIHLKYLGLRNSNIGILPS-SIVKLQRLQTLDFSGDVGCPVELPI- 685 (919)
Q Consensus 609 ~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~-i~~L~~Lr~L~L~~~~i~~LP~-~l~~L~~L~~L~L~~~~~~~~~lp~- 685 (919)
.+.+|++|++++ +. +. .+|.. +..+++|++|+|++|.++.+|. .+..+++|++|++++| .+..+|.
T Consensus 43 ~l~~l~~l~l~~-~~-----l~---~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~ 111 (390)
T 3o6n_A 43 TLNNQKIVTFKN-ST-----MR---KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN--AIRYLPPH 111 (390)
T ss_dssp GGCCCSEEEEES-CE-----ES---EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS--CCCCCCTT
T ss_pred ccCCceEEEecC-Cc-----hh---hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC--CCCcCCHH
Confidence 467899999999 88 77 78866 5889999999999999988775 8999999999999999 7777765
Q ss_pred ccccccccccccc---cc-ccccC-CCCcCcCccccccccc--ccchhhccCCCCCCeEEeeecCccccccccchhhHHh
Q 036584 686 EINMMQELRHLIG---NF-KGTLP-IENLTNLQTLKYVQSK--SWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIA 758 (919)
Q Consensus 686 ~i~~L~~L~~L~~---~~-~~~~~-i~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~ 758 (919)
.+..+++|++|.. .. ..+.. ++.+++|++|++..+. ......+..+++|+.|.++++... . ..+.
T Consensus 112 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~-----~~~~ 183 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT---H-----VDLS 183 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS---B-----CCGG
T ss_pred HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC---c-----cccc
Confidence 5789999999943 22 22333 5889999999998887 334456889999999999988632 1 2355
Q ss_pred hcCCCcEEEEeecCCCCccCcCCCCCCCCceeEEEceec-CCCCcchhccCCCcceEEEEccCCCCCCchhhhcCCCCCe
Q 036584 759 KLKNLRFLSVKLLDANSFASLQPLSHCQCLVDLRLSGRM-KKLPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLII 837 (919)
Q Consensus 759 ~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~ 837 (919)
.+++|+.|.+.+ +.+. .+..+++|++|+++++. ..+|... +++|+.|+|++|.+++ .+.++.+++|+.
T Consensus 184 ~l~~L~~L~l~~---n~l~---~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~--~~~l~~l~~L~~ 252 (390)
T 3o6n_A 184 LIPSLFHANVSY---NLLS---TLAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVE 252 (390)
T ss_dssp GCTTCSEEECCS---SCCS---EEECCSSCSEEECCSSCCCEEECCC---CSSCCEEECCSSCCCC--CGGGGGCTTCSE
T ss_pred cccccceeeccc---cccc---ccCCCCcceEEECCCCeeeeccccc---cccccEEECCCCCCcc--cHHHcCCCCccE
Confidence 678999999853 3332 23456789999999875 4444332 4899999999999874 368999999999
Q ss_pred EEEeeccccCeeEEEcCCCCcccceeEEecCCcccEEEccCCcccccceEEccccCccC-CcccccCCCCCCeeEecccC
Q 036584 838 LDLHFRCHYVKKLGCRAEGFPLLEILQLDADGLVEWQVEEGAMPVLRGLKIAAEIPKLK-IPERLRSVPPPAEWECEDSR 916 (919)
Q Consensus 838 L~L~~~~~~~~~~~~~~~~f~~L~~L~l~~~~l~~~~~~~~~~p~L~~L~l~~nC~~l~-lp~~l~~L~~L~~l~~~~~~ 916 (919)
|+|++|... ...+.....+++|+.|+++.|.++.++.....+|+|+.|++++ | .++ +|..+..+++|+.+++++++
T Consensus 253 L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~-n-~l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 253 VDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSH-N-HLLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp EECCSSCCC-EEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCS-S-CCCCCGGGHHHHTTCSEEECCSSC
T ss_pred EECCCCcCC-CcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCC-C-cceecCccccccCcCCEEECCCCc
Confidence 999966543 2334456789999999999889999887777899999999998 4 778 99999999999999999865
Q ss_pred C
Q 036584 917 N 917 (919)
Q Consensus 917 ~ 917 (919)
.
T Consensus 330 i 330 (390)
T 3o6n_A 330 I 330 (390)
T ss_dssp C
T ss_pred c
Confidence 3
No 30
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=2.9e-20 Score=218.40 Aligned_cols=314 Identities=16% Similarity=0.142 Sum_probs=212.6
Q ss_pred CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccC
Q 036584 580 NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILP 659 (919)
Q Consensus 580 ~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP 659 (919)
.+++++|.+.++. .....+..|..+++|++|+|++ +. +.. ..|..++++++|++|+|++|.++.+|
T Consensus 25 ~~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~-n~-----i~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~ 90 (549)
T 2z81_A 25 TAAMKSLDLSFNK------ITYIGHGDLRACANLQVLILKS-SR-----INT--IEGDAFYSLGSLEHLDLSDNHLSSLS 90 (549)
T ss_dssp CTTCCEEECCSSC------CCEECSSTTSSCTTCCEEECTT-SC-----CCE--ECTTTTTTCTTCCEEECTTSCCCSCC
T ss_pred CCCccEEECcCCc------cCccChhhhhcCCcccEEECCC-CC-----cCc--cChhhccccccCCEEECCCCccCccC
Confidence 5799999999982 3345567789999999999999 88 772 34578999999999999999998887
Q ss_pred hh-hhcCCCCcEEecCCCCCcccc--cCcccccccccccccc---c-c-ccc-cCCCCcCcCccccccccc--ccchhhc
Q 036584 660 SS-IVKLQRLQTLDFSGDVGCPVE--LPIEINMMQELRHLIG---N-F-KGT-LPIENLTNLQTLKYVQSK--SWNKVNT 728 (919)
Q Consensus 660 ~~-l~~L~~L~~L~L~~~~~~~~~--lp~~i~~L~~L~~L~~---~-~-~~~-~~i~~l~~L~~L~~~~~~--~~~~~~l 728 (919)
.. ++.+++|++|++++| .+.. .|..+.++++|++|.. . . ..+ ..++.+++|+.|++..+. ......+
T Consensus 91 ~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 168 (549)
T 2z81_A 91 SSWFGPLSSLKYLNLMGN--PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL 168 (549)
T ss_dssp HHHHTTCTTCCEEECTTC--CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred HHHhccCCCCcEEECCCC--cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh
Confidence 75 999999999999999 6764 4678999999999943 1 1 122 348899999999998887 3356778
Q ss_pred cCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCcc--CcCCCCCCCCceeEEEce-----------
Q 036584 729 AKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFA--SLQPLSHCQCLVDLRLSG----------- 795 (919)
Q Consensus 729 ~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~l~~~~~L~~L~L~~----------- 795 (919)
+.+++|+.|.+..+... ... . ..+..+++|+.|++.++....+. .......+++|+.|++++
T Consensus 169 ~~l~~L~~L~l~~n~~~---~~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 243 (549)
T 2z81_A 169 KSIRDIHHLTLHLSESA---FLL-E-IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243 (549)
T ss_dssp TTCSEEEEEEEECSBST---THH-H-HHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHH
T ss_pred hccccCceEecccCccc---ccc-h-hhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHH
Confidence 88999999999987522 111 1 23456788999998754322210 001111233333333332
Q ss_pred -----------------ec-C---C------------------------CCcc--------hhccCCCcceEEEEccCCC
Q 036584 796 -----------------RM-K---K------------------------LPED--------MHVFLPNLECLSLSVPYPK 822 (919)
Q Consensus 796 -----------------~~-~---~------------------------~p~~--------~~~l~~~L~~L~L~~~~l~ 822 (919)
+. . . +|.+ +...+++|+.|++++|.+.
T Consensus 244 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~ 323 (549)
T 2z81_A 244 LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323 (549)
T ss_dssp HGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC
T ss_pred HHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc
Confidence 21 0 0 0000 0111356777777777775
Q ss_pred CCCchhhhcCCCCCeEEEeeccccCeeE--EEcCCCCcccceeEEecCCcccEEE---ccCCcccccceEEccccCccC-
Q 036584 823 EDPMPALEMLPNLIILDLHFRCHYVKKL--GCRAEGFPLLEILQLDADGLVEWQV---EEGAMPVLRGLKIAAEIPKLK- 896 (919)
Q Consensus 823 ~~~~~~l~~lp~L~~L~L~~~~~~~~~~--~~~~~~f~~L~~L~l~~~~l~~~~~---~~~~~p~L~~L~l~~nC~~l~- 896 (919)
..+...++.+++|+.|+|++|....... ....+.+++|+.|+++.|.++.++. ....+++|+.|++++ ++++
T Consensus 324 ~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~--N~l~~ 401 (549)
T 2z81_A 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISR--NTFHP 401 (549)
T ss_dssp CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTT--CCCCC
T ss_pred cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCC--CCCcc
Confidence 3332333578888888888665433211 1124567888888888777766532 245678888888887 3677
Q ss_pred CcccccCCCCCCeeEecccC
Q 036584 897 IPERLRSVPPPAEWECEDSR 916 (919)
Q Consensus 897 lp~~l~~L~~L~~l~~~~~~ 916 (919)
+|..+..+++|+.++++++.
T Consensus 402 lp~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 402 MPDSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp CCSCCCCCTTCCEEECTTSC
T ss_pred CChhhcccccccEEECCCCC
Confidence 88777777788888777754
No 31
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.82 E-value=2e-19 Score=217.05 Aligned_cols=331 Identities=16% Similarity=0.121 Sum_probs=201.6
Q ss_pred CCCCeeEEEEecCCCCccccccC--CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchh
Q 036584 557 VISSCRRQAIYSHSPSYFWLHHG--NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNR 634 (919)
Q Consensus 557 ~~~~~r~l~l~~~~~~~~~~~~~--~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~ 634 (919)
.+.++|+|.+..+.....+.... +++|++|.+.++. .....+..|.++++|++|+|++ +. +. .
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~L~~-n~-----l~---~ 87 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT------ISKLEPELCQKLPMLKVLNLQH-NE-----LS---Q 87 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC------CCCCCTTHHHHCTTCCEEECCS-SC-----CC---C
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc------cCccCHHHHhcccCcCEEECCC-Cc-----cC---c
Confidence 45789999999777666654322 8999999999872 3446678889999999999999 87 77 6
Q ss_pred hhh-hhcccccceEEeecCCCccccC-hhhhcCCCCcEEecCCCCCccccc-Cccccccccccccccc---ccccc--C-
Q 036584 635 LSE-KIGDLIHLKYLGLRNSNIGILP-SSIVKLQRLQTLDFSGDVGCPVEL-PIEINMMQELRHLIGN---FKGTL--P- 705 (919)
Q Consensus 635 lp~-~i~~L~~Lr~L~L~~~~i~~LP-~~l~~L~~L~~L~L~~~~~~~~~l-p~~i~~L~~L~~L~~~---~~~~~--~- 705 (919)
+|. .++++.+|++|+|++|.+..+| ..++++++|++|++++| .+..+ |..+.++++|++|... ..... .
T Consensus 88 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 165 (680)
T 1ziw_A 88 LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN--GLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL 165 (680)
T ss_dssp CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS--CCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHH
T ss_pred cChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC--cccccCchhhcccccCCEEEccCCcccccCHHHh
Confidence 776 5899999999999999998776 57999999999999999 55554 4567888999988431 11111 1
Q ss_pred -CCCcCcCccccccccc--ccchhhccCC---------------------------CC----------------------
Q 036584 706 -IENLTNLQTLKYVQSK--SWNKVNTAKL---------------------------VN---------------------- 733 (919)
Q Consensus 706 -i~~l~~L~~L~~~~~~--~~~~~~l~~l---------------------------~~---------------------- 733 (919)
...+++|+.|++..+. ......+..+ ++
T Consensus 166 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l 245 (680)
T 1ziw_A 166 DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL 245 (680)
T ss_dssp GGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGG
T ss_pred hccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhcc
Confidence 2244667777666554 1111112211 23
Q ss_pred ----CCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCc--CCCCCCCCceeEEEceec-C------CC
Q 036584 734 ----LRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASL--QPLSHCQCLVDLRLSGRM-K------KL 800 (919)
Q Consensus 734 ----L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~~~~L~~L~L~~~~-~------~~ 800 (919)
|+.|+++++... ... +..+..+++|+.|++.++ .+... ..+..+++|+.|+++++. . .+
T Consensus 246 ~~~~L~~L~Ls~n~l~---~~~--~~~~~~l~~L~~L~L~~n---~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l 317 (680)
T 1ziw_A 246 KWTNLTMLDLSYNNLN---VVG--NDSFAWLPQLEYFFLEYN---NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASL 317 (680)
T ss_dssp GGSCCCEEECTTSCCC---EEC--TTTTTTCTTCCEEECCSC---CBSEECTTTTTTCTTCCEEECTTCBCCC------C
T ss_pred CcCCCCEEECCCCCcC---ccC--cccccCcccccEeeCCCC---ccCccChhhhcCCCCccEEeccchhhhcccccccc
Confidence 444444433211 111 134455566666665332 22222 125556667777776542 1 23
Q ss_pred Cc----chhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccccCeeEE-------------------------
Q 036584 801 PE----DMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHYVKKLG------------------------- 851 (919)
Q Consensus 801 p~----~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~------------------------- 851 (919)
|. .+..+ ++|++|++++|.+.+..+..+..+++|++|++++|......+.
T Consensus 318 p~i~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~ 396 (680)
T 1ziw_A 318 PKIDDFSFQWL-KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396 (680)
T ss_dssp CEECTTTTTTC-TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEE
T ss_pred cccChhhcccC-CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeE
Confidence 32 33344 8888888888888777777788888888888875543222211
Q ss_pred --EcCCCCcccceeEEecCCccc-EE-EccCCcccccceEEccccCccC--CcccccCCCCCCeeEeccc
Q 036584 852 --CRAEGFPLLEILQLDADGLVE-WQ-VEEGAMPVLRGLKIAAEIPKLK--IPERLRSVPPPAEWECEDS 915 (919)
Q Consensus 852 --~~~~~f~~L~~L~l~~~~l~~-~~-~~~~~~p~L~~L~l~~nC~~l~--lp~~l~~L~~L~~l~~~~~ 915 (919)
.....+++|+.|+++.|.+.. ++ .....+++|+.|++++ |. +. .|..+..++.|+.++++++
T Consensus 397 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~-n~-l~~~~~~~~~~~~~L~~L~l~~n 464 (680)
T 1ziw_A 397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY-NK-YLQLTRNSFALVPSLQRLMLRRV 464 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCS-CS-EEECCTTTTTTCTTCCEEECTTS
T ss_pred ChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCC-CC-cceeChhhhhcCcccccchhccc
Confidence 112234555555555444432 11 1223455566666655 32 33 3445556666666666554
No 32
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.82 E-value=1.3e-19 Score=223.27 Aligned_cols=316 Identities=15% Similarity=0.109 Sum_probs=221.1
Q ss_pred CCCCccccccCCCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhh-hhhhcccccceE
Q 036584 569 HSPSYFWLHHGNSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRL-SEKIGDLIHLKY 647 (919)
Q Consensus 569 ~~~~~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~l-p~~i~~L~~Lr~ 647 (919)
.+...++. ..+++++|.++++. +....+..|.++++|++|+|++ +.. +. .+ |..+++|++|++
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~------i~~i~~~~~~~l~~L~~LdLs~-n~~----~~---~i~~~~f~~L~~L~~ 77 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNY------IRTVTASSFPFLEQLQLLELGS-QYT----PL---TIDKEAFRNLPNLRI 77 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCC------CCEECSSSCSSCCSCSEEEECT-TCC----CC---EECTTTTSSCTTCCE
T ss_pred CCCCCCCC--CCCCcCEEECCCCc------CCccChhHCcccccCeEEeCCC-CCC----cc---ccCHHHhcCCCCCCE
Confidence 34445553 57899999999982 3345567789999999999999 641 43 56 778999999999
Q ss_pred EeecCCCcccc-ChhhhcCCCCcEEecCCCCCcccc-cCcc--cccccccccccc---cccc---ccCCCCcCcCccccc
Q 036584 648 LGLRNSNIGIL-PSSIVKLQRLQTLDFSGDVGCPVE-LPIE--INMMQELRHLIG---NFKG---TLPIENLTNLQTLKY 717 (919)
Q Consensus 648 L~L~~~~i~~L-P~~l~~L~~L~~L~L~~~~~~~~~-lp~~--i~~L~~L~~L~~---~~~~---~~~i~~l~~L~~L~~ 717 (919)
|+|++|.|..+ |..++++++|++|+|++| .+.. +|.. +.+|++|++|.. .... +..++++++|++|++
T Consensus 78 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~L 155 (844)
T 3j0a_A 78 LDLGSSKIYFLHPDAFQGLFHLFELRLYFC--GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF 155 (844)
T ss_dssp EECTTCCCCEECTTSSCSCSSCCCEECTTC--CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEE
T ss_pred EECCCCcCcccCHhHccCCcccCEeeCcCC--CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEEC
Confidence 99999999666 789999999999999999 5654 5655 889999999942 2221 134889999999998
Q ss_pred cccc--ccchhhccCC--CCCCeEEeeecCccccccccchhhHHhhcC------CCcEEEEeecCCCC--ccC-------
Q 036584 718 VQSK--SWNKVNTAKL--VNLRDLHIEEDEDEWEGETVFSFESIAKLK------NLRFLSVKLLDANS--FAS------- 778 (919)
Q Consensus 718 ~~~~--~~~~~~l~~l--~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~------~L~~L~l~~~~~~~--~~~------- 778 (919)
..+. ......+..+ ++|+.|.++.+...... . ..+..+. +|+.|+++++.... ...
T Consensus 156 s~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~--~---~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 230 (844)
T 3j0a_A 156 SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV--S---VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230 (844)
T ss_dssp ESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCC--C---CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred CCCcCCeeCHHHcccccCCccceEECCCCcccccc--c---cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence 8876 3344556665 88999999987532111 1 1222222 47888875441110 000
Q ss_pred --------------------------cCCCCC--CCCceeEEEceec-C-CCCcchhccCCCcceEEEEccCCCCCCchh
Q 036584 779 --------------------------LQPLSH--CQCLVDLRLSGRM-K-KLPEDMHVFLPNLECLSLSVPYPKEDPMPA 828 (919)
Q Consensus 779 --------------------------~~~l~~--~~~L~~L~L~~~~-~-~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~ 828 (919)
...+.. +++|+.|++++|. . ..|..+..+ ++|+.|+|++|.+.+..+..
T Consensus 231 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~ 309 (844)
T 3j0a_A 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL-KDLKVLNLAYNKINKIADEA 309 (844)
T ss_dssp CCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSC-CCCCEEEEESCCCCEECTTT
T ss_pred ccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcC-CCCCEEECCCCcCCCCChHH
Confidence 000111 3678899998864 2 345556665 89999999999888777778
Q ss_pred hhcCCCCCeEEEeeccccCeeEEEcCCCCcccceeEEecCCcccEEEc-cCCcccccceEEccccCccC-CcccccCCCC
Q 036584 829 LEMLPNLIILDLHFRCHYVKKLGCRAEGFPLLEILQLDADGLVEWQVE-EGAMPVLRGLKIAAEIPKLK-IPERLRSVPP 906 (919)
Q Consensus 829 l~~lp~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~l~~~~l~~~~~~-~~~~p~L~~L~l~~nC~~l~-lp~~l~~L~~ 906 (919)
++.+++|++|+|++|.... ..+....++++|+.|+++.|.+..++.. ...+++|+.|++++ +.++ ++. +++
T Consensus 310 ~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~--N~l~~i~~----~~~ 382 (844)
T 3j0a_A 310 FYGLDNLQVLNLSYNLLGE-LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD--NALTTIHF----IPS 382 (844)
T ss_dssp TTTCSSCCEEEEESCCCSC-CCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEET--CCSCCCSS----CCS
T ss_pred hcCCCCCCEEECCCCCCCc-cCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCC--CCCCcccC----CCC
Confidence 8899999999998665432 2234456788999999997777766432 35688999999987 4566 554 566
Q ss_pred CCeeEeccc
Q 036584 907 PAEWECEDS 915 (919)
Q Consensus 907 L~~l~~~~~ 915 (919)
|+.++++++
T Consensus 383 L~~L~l~~N 391 (844)
T 3j0a_A 383 IPDIFLSGN 391 (844)
T ss_dssp CSEEEEESC
T ss_pred cchhccCCC
Confidence 666666654
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=7.3e-20 Score=216.55 Aligned_cols=276 Identities=15% Similarity=0.151 Sum_probs=220.6
Q ss_pred cCceEEEEEeccCccccccccccchhhhhh-hcccccceEEeecCCCccccCh-hhhcCCCCcEEecCCCCCcccccCcc
Q 036584 609 RFFLLRVFDVEADLDRESTLMHWSNRLSEK-IGDLIHLKYLGLRNSNIGILPS-SIVKLQRLQTLDFSGDVGCPVELPIE 686 (919)
Q Consensus 609 ~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~-i~~L~~Lr~L~L~~~~i~~LP~-~l~~L~~L~~L~L~~~~~~~~~lp~~ 686 (919)
.+.++++|++++ +. +. .+|.. +..+++|++|+|++|.|+.+|. .++.+++|++|+|++| .+..+|..
T Consensus 49 ~l~~l~~l~l~~-~~-----l~---~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~ 117 (597)
T 3oja_B 49 TLNNQKIVTFKN-ST-----MR---KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN--AIRYLPPH 117 (597)
T ss_dssp GGCCCSEEEESS-CE-----ES---EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS--CCCCCCTT
T ss_pred cCCCceEEEeeC-CC-----CC---CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC--cCCCCCHH
Confidence 467899999999 87 77 77765 6789999999999999987765 8999999999999999 78887764
Q ss_pred -cccccccccccc---ccc-cccC-CCCcCcCccccccccc--ccchhhccCCCCCCeEEeeecCccccccccchhhHHh
Q 036584 687 -INMMQELRHLIG---NFK-GTLP-IENLTNLQTLKYVQSK--SWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIA 758 (919)
Q Consensus 687 -i~~L~~L~~L~~---~~~-~~~~-i~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~ 758 (919)
+..+++|++|.. ... .+.. ++.+++|++|++..+. ......+..+++|+.|+++++... . ..+.
T Consensus 118 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~---~-----~~~~ 189 (597)
T 3oja_B 118 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT---H-----VDLS 189 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS---B-----CCGG
T ss_pred HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC---C-----cChh
Confidence 689999999943 222 2333 6899999999998887 334456889999999999988532 1 2245
Q ss_pred hcCCCcEEEEeecCCCCccCcCCCCCCCCceeEEEceec-CCCCcchhccCCCcceEEEEccCCCCCCchhhhcCCCCCe
Q 036584 759 KLKNLRFLSVKLLDANSFASLQPLSHCQCLVDLRLSGRM-KKLPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLII 837 (919)
Q Consensus 759 ~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~ 837 (919)
.+++|+.|.+.+ +.+. .+..+++|+.|++++|. ..+|..+ +++|+.|+|++|.+++ ++.++.+++|+.
T Consensus 190 ~l~~L~~L~l~~---n~l~---~l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~ 258 (597)
T 3oja_B 190 LIPSLFHANVSY---NLLS---TLAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVE 258 (597)
T ss_dssp GCTTCSEEECCS---SCCS---EEECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSE
T ss_pred hhhhhhhhhccc---Cccc---cccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCE
Confidence 678999999853 3332 23456789999999875 3344332 4899999999999975 478999999999
Q ss_pred EEEeeccccCeeEEEcCCCCcccceeEEecCCcccEEEccCCcccccceEEccccCccC-CcccccCCCCCCeeEecccC
Q 036584 838 LDLHFRCHYVKKLGCRAEGFPLLEILQLDADGLVEWQVEEGAMPVLRGLKIAAEIPKLK-IPERLRSVPPPAEWECEDSR 916 (919)
Q Consensus 838 L~L~~~~~~~~~~~~~~~~f~~L~~L~l~~~~l~~~~~~~~~~p~L~~L~l~~nC~~l~-lp~~l~~L~~L~~l~~~~~~ 916 (919)
|+|++|.+. ...+...+.+++|+.|+|+.|.++.++.....+|+|+.|++++ +.+. +|..+..+++|+.|++++++
T Consensus 259 L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~--N~l~~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 259 VDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSH--NHLLHVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp EECCSSCCC-EEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCS--SCCCCCGGGHHHHTTCSEEECCSSC
T ss_pred EECCCCccC-CCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCC--CCCCccCcccccCCCCCEEECCCCC
Confidence 999966543 3334456789999999999989999987777899999999998 4677 99999999999999999875
Q ss_pred C
Q 036584 917 N 917 (919)
Q Consensus 917 ~ 917 (919)
.
T Consensus 336 l 336 (597)
T 3oja_B 336 I 336 (597)
T ss_dssp C
T ss_pred C
Confidence 3
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=207.23 Aligned_cols=289 Identities=16% Similarity=0.109 Sum_probs=164.3
Q ss_pred CCCCeeEEEEecCCCCccccccC--CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchh
Q 036584 557 VISSCRRQAIYSHSPSYFWLHHG--NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNR 634 (919)
Q Consensus 557 ~~~~~r~l~l~~~~~~~~~~~~~--~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~ 634 (919)
.+..+|.|.+..+.......... +++|+.|.+.++. .....+..|.++++|++|+|++ +. +. .
T Consensus 30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~------i~~~~~~~~~~l~~L~~L~L~~-n~-----l~---~ 94 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI------VSAVEPGAFNNLFNLRTLGLRS-NR-----LK---L 94 (477)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC------CCEECTTTTTTCTTCCEEECCS-SC-----CC---S
T ss_pred CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCc------cCEeChhhhhCCccCCEEECCC-Cc-----CC---c
Confidence 56789999999777766643322 8999999999882 3345577899999999999999 88 77 6
Q ss_pred hhhh-hcccccceEEeecCCCcccc-ChhhhcCCCCcEEecCCCCCcccccC-ccccccccccccccccccccCCCCcCc
Q 036584 635 LSEK-IGDLIHLKYLGLRNSNIGIL-PSSIVKLQRLQTLDFSGDVGCPVELP-IEINMMQELRHLIGNFKGTLPIENLTN 711 (919)
Q Consensus 635 lp~~-i~~L~~Lr~L~L~~~~i~~L-P~~l~~L~~L~~L~L~~~~~~~~~lp-~~i~~L~~L~~L~~~~~~~~~i~~l~~ 711 (919)
+|.. +.++++|++|+|++|.+..+ |..+..+++|++|++++| .+..++ ..+..+++|++|.
T Consensus 95 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~-------------- 158 (477)
T 2id5_A 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN--DLVYISHRAFSGLNSLEQLT-------------- 158 (477)
T ss_dssp CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT--TCCEECTTSSTTCTTCCEEE--------------
T ss_pred cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC--ccceeChhhccCCCCCCEEE--------------
Confidence 7654 78999999999999999665 568999999999999999 666554 3566666666663
Q ss_pred Cccccccccc--ccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCcC-CCCCCCCc
Q 036584 712 LQTLKYVQSK--SWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASLQ-PLSHCQCL 788 (919)
Q Consensus 712 L~~L~~~~~~--~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~l~~~~~L 788 (919)
+..+. ......+..+++|+.|.+.++... ... . ..+..+++|+.|.+.++.. +..+. ......+|
T Consensus 159 -----l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~---~~~-~-~~~~~l~~L~~L~l~~~~~--~~~~~~~~~~~~~L 226 (477)
T 2id5_A 159 -----LEKCNLTSIPTEALSHLHGLIVLRLRHLNIN---AIR-D-YSFKRLYRLKVLEISHWPY--LDTMTPNCLYGLNL 226 (477)
T ss_dssp -----EESCCCSSCCHHHHTTCTTCCEEEEESCCCC---EEC-T-TCSCSCTTCCEEEEECCTT--CCEECTTTTTTCCC
T ss_pred -----CCCCcCcccChhHhcccCCCcEEeCCCCcCc---EeC-h-hhcccCcccceeeCCCCcc--ccccCcccccCccc
Confidence 22222 111223444445555555444311 111 1 2334445555555543211 10111 11122345
Q ss_pred eeEEEceec-CCCCcc-hhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccccCeeEEEcCCCCcccceeEEe
Q 036584 789 VDLRLSGRM-KKLPED-MHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHYVKKLGCRAEGFPLLEILQLD 866 (919)
Q Consensus 789 ~~L~L~~~~-~~~p~~-~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~l~ 866 (919)
++|++++|. ..+|.. +..+ ++|+.|+|++|.+.......+..+++|+.|+|++|.... ..+.....+++|+.|+|+
T Consensus 227 ~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~ 304 (477)
T 2id5_A 227 TSLSITHCNLTAVPYLAVRHL-VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV-VEPYAFRGLNYLRVLNVS 304 (477)
T ss_dssp SEEEEESSCCCSCCHHHHTTC-TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSE-ECTTTBTTCTTCCEEECC
T ss_pred cEEECcCCcccccCHHHhcCc-cccCeeECCCCcCCccChhhccccccCCEEECCCCccce-ECHHHhcCcccCCEEECC
Confidence 555555442 334422 2222 555555555555544444444555555555555333221 111223344555555555
Q ss_pred cCCcccEEEc-cCCcccccceEEcc
Q 036584 867 ADGLVEWQVE-EGAMPVLRGLKIAA 890 (919)
Q Consensus 867 ~~~l~~~~~~-~~~~p~L~~L~l~~ 890 (919)
.|.++.++.. ...+++|+.|++++
T Consensus 305 ~N~l~~~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 305 GNQLTTLEESVFHSVGNLETLILDS 329 (477)
T ss_dssp SSCCSCCCGGGBSCGGGCCEEECCS
T ss_pred CCcCceeCHhHcCCCcccCEEEccC
Confidence 4444444322 13345555555554
No 35
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=211.14 Aligned_cols=331 Identities=12% Similarity=0.067 Sum_probs=222.2
Q ss_pred eEEEEecCCCCccccccCCCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhhhhcc
Q 036584 562 RRQAIYSHSPSYFWLHHGNSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGD 641 (919)
Q Consensus 562 r~l~l~~~~~~~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~ 641 (919)
|++.+..+....++. ...++++.|.+.++. .....+..|..+++|++|+|++ +. +.. ..|..+++
T Consensus 3 ~~l~ls~n~l~~ip~-~~~~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~Ls~-n~-----l~~--~~~~~~~~ 67 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPK-DLSQKTTILNISQNY------ISELWTSDILSLSKLRILIISH-NR-----IQY--LDISVFKF 67 (520)
T ss_dssp CEEECTTSCCSSCCC-SCCTTCSEEECCSSC------CCCCCHHHHTTCTTCCEEECCS-SC-----CCE--EEGGGGTT
T ss_pred ceEecCCCCcccccc-cccccccEEECCCCc------ccccChhhccccccccEEecCC-Cc-----cCC--cChHHhhc
Confidence 567777666666553 235899999999982 3446667899999999999999 88 772 44788999
Q ss_pred cccceEEeecCCCccccChhhhcCCCCcEEecCCCCCcccc--cCcccccccccccccccc--ccccCCCCcCcC--ccc
Q 036584 642 LIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVE--LPIEINMMQELRHLIGNF--KGTLPIENLTNL--QTL 715 (919)
Q Consensus 642 L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~--lp~~i~~L~~L~~L~~~~--~~~~~i~~l~~L--~~L 715 (919)
+++|++|+|++|.|+.+|.. .+++|++|++++| .+.. +|..+.++++|++|.... .....++.+++| +.|
T Consensus 68 l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N--~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L 143 (520)
T 2z7x_B 68 NQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFN--AFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKV 143 (520)
T ss_dssp CTTCCEEECCSSCCCEEECC--CCCCCSEEECCSS--CCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEE
T ss_pred ccCCCEEecCCCceeecCcc--ccCCccEEeccCC--ccccccchhhhccCCcceEEEecCcccchhhccccccceeeEE
Confidence 99999999999999999987 8999999999999 6665 678999999999994321 122346778888 888
Q ss_pred ccccccc----cchhhcc--------------------------CCCCCCeEEeeecCcccccccc-chhhHHhhcC---
Q 036584 716 KYVQSKS----WNKVNTA--------------------------KLVNLRDLHIEEDEDEWEGETV-FSFESIAKLK--- 761 (919)
Q Consensus 716 ~~~~~~~----~~~~~l~--------------------------~l~~L~~L~i~~~~~~~~~~~~-~~~~~l~~l~--- 761 (919)
.+..+.. ..+..+. .+++|+.|+++.+......... .....+..++
T Consensus 144 ~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~ 223 (520)
T 2z7x_B 144 LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLS 223 (520)
T ss_dssp EEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCC
T ss_pred EeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchh
Confidence 8777642 1122222 3556666666665300000000 0002233333
Q ss_pred ------------------------CCcEEEEeecCCC-CccCcCCC-----CCCCCceeEEEceecCCCC-cch------
Q 036584 762 ------------------------NLRFLSVKLLDAN-SFASLQPL-----SHCQCLVDLRLSGRMKKLP-EDM------ 804 (919)
Q Consensus 762 ------------------------~L~~L~l~~~~~~-~~~~~~~l-----~~~~~L~~L~L~~~~~~~p-~~~------ 804 (919)
+|+.|.++++... .++ ..+ ..+++|+.++++++.-.+| .++
T Consensus 224 ~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p--~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~ 301 (520)
T 2z7x_B 224 NLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLD--FRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSN 301 (520)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCC--CCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHT
T ss_pred hccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccc--cchhhcccccCceeEeccccccceecchhhhhccccc
Confidence 5555555433211 111 112 4455666666655432333 111
Q ss_pred -------------------hccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccccCe-eEEEcCCCCcccceeE
Q 036584 805 -------------------HVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHYVK-KLGCRAEGFPLLEILQ 864 (919)
Q Consensus 805 -------------------~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~-~~~~~~~~f~~L~~L~ 864 (919)
.. +++|++|+|++|.+++..+..++.+++|+.|+|++|.+... .++.....+++|++|+
T Consensus 302 ~~L~~L~l~~n~l~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~ 380 (520)
T 2z7x_B 302 MNIKNFTVSGTRMVHMLCPSK-ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380 (520)
T ss_dssp CCCSEEEEESSCCCCCCCCSS-CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEE
T ss_pred CceeEEEcCCCccccccchhh-CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEE
Confidence 23 48999999999999887888999999999999997765431 2223356899999999
Q ss_pred EecCCccc-EEEc-cCCc----------------------ccccceEEccccCccC-CcccccCCCCCCeeEecccC
Q 036584 865 LDADGLVE-WQVE-EGAM----------------------PVLRGLKIAAEIPKLK-IPERLRSVPPPAEWECEDSR 916 (919)
Q Consensus 865 l~~~~l~~-~~~~-~~~~----------------------p~L~~L~l~~nC~~l~-lp~~l~~L~~L~~l~~~~~~ 916 (919)
++.|.++. ++.. ...+ ++|+.|++++ ++++ +|..+..+++|+++++++++
T Consensus 381 Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~--N~l~~ip~~~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHS--NKIKSIPKQVVKLEALQELNVASNQ 455 (520)
T ss_dssp CCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCS--SCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCC--CcccccchhhhcCCCCCEEECCCCc
Confidence 99777765 4321 1122 4666666665 3566 78777788888888888764
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=2.9e-19 Score=195.16 Aligned_cols=284 Identities=17% Similarity=0.182 Sum_probs=198.2
Q ss_pred CcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhh-hhcccccceEEeecCCCcccc-
Q 036584 581 SLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSE-KIGDLIHLKYLGLRNSNIGIL- 658 (919)
Q Consensus 581 ~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~-~i~~L~~Lr~L~L~~~~i~~L- 658 (919)
.++|.+.+.++. . ..+|..+ .+.|++|+|++ +. +. .+|. .++++++|++|+|++|.++.+
T Consensus 31 c~l~~l~~~~~~------l-~~lp~~~--~~~l~~L~L~~-n~-----i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (330)
T 1xku_A 31 CHLRVVQCSDLG------L-EKVPKDL--PPDTALLDLQN-NK-----IT---EIKDGDFKNLKNLHTLILINNKISKIS 92 (330)
T ss_dssp EETTEEECTTSC------C-CSCCCSC--CTTCCEEECCS-SC-----CC---CBCTTTTTTCTTCCEEECCSSCCCCBC
T ss_pred CCCeEEEecCCC------c-cccCccC--CCCCeEEECCC-Cc-----CC---EeChhhhccCCCCCEEECCCCcCCeeC
Confidence 467888777662 1 1233322 25788888888 77 66 4544 688888888888888888666
Q ss_pred ChhhhcCCCCcEEecCCCCCcccccCccccccccccccccccccccCCCCcCcCccccccccc--ccchhhccCCCCCCe
Q 036584 659 PSSIVKLQRLQTLDFSGDVGCPVELPIEINMMQELRHLIGNFKGTLPIENLTNLQTLKYVQSK--SWNKVNTAKLVNLRD 736 (919)
Q Consensus 659 P~~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~i~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~ 736 (919)
|..+..+++|++|++++| .+..+|..+. + +|++|.+..+. ......+..+++|+.
T Consensus 93 ~~~~~~l~~L~~L~Ls~n--~l~~l~~~~~--~-------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 149 (330)
T 1xku_A 93 PGAFAPLVKLERLYLSKN--QLKELPEKMP--K-------------------TLQELRVHENEITKVRKSVFNGLNQMIV 149 (330)
T ss_dssp TTTTTTCTTCCEEECCSS--CCSBCCSSCC--T-------------------TCCEEECCSSCCCBBCHHHHTTCTTCCE
T ss_pred HHHhcCCCCCCEEECCCC--cCCccChhhc--c-------------------cccEEECCCCcccccCHhHhcCCccccE
Confidence 778888888888888888 6777776543 3 44444444444 223445778888999
Q ss_pred EEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCcCCCCCCCCceeEEEceec-CC-CCcchhccCCCcceE
Q 036584 737 LHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASLQPLSHCQCLVDLRLSGRM-KK-LPEDMHVFLPNLECL 814 (919)
Q Consensus 737 L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~-~p~~~~~l~~~L~~L 814 (919)
|+++.+........ +..+..+++|+.|.+.++ .+..++. ..+++|++|++++|. .. .|.++..+ ++|++|
T Consensus 150 L~l~~n~l~~~~~~---~~~~~~l~~L~~L~l~~n---~l~~l~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L 221 (330)
T 1xku_A 150 VELGTNPLKSSGIE---NGAFQGMKKLSYIRIADT---NITTIPQ-GLPPSLTELHLDGNKITKVDAASLKGL-NNLAKL 221 (330)
T ss_dssp EECCSSCCCGGGBC---TTGGGGCTTCCEEECCSS---CCCSCCS-SCCTTCSEEECTTSCCCEECTGGGTTC-TTCCEE
T ss_pred EECCCCcCCccCcC---hhhccCCCCcCEEECCCC---ccccCCc-cccccCCEEECCCCcCCccCHHHhcCC-CCCCEE
Confidence 99888753311122 267788899999998544 3333322 223789999999874 33 46677776 999999
Q ss_pred EEEccCCCCCCchhhhcCCCCCeEEEeeccccCeeEEEcCCCCcccceeEEecCCcccEEEccC-------CcccccceE
Q 036584 815 SLSVPYPKEDPMPALEMLPNLIILDLHFRCHYVKKLGCRAEGFPLLEILQLDADGLVEWQVEEG-------AMPVLRGLK 887 (919)
Q Consensus 815 ~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~l~~~~l~~~~~~~~-------~~p~L~~L~ 887 (919)
+|++|.+....+..++.+++|+.|+|++|... .++.....+++|++|+++.|.++.++.... ..+.|+.|+
T Consensus 222 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~ 299 (330)
T 1xku_A 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLV--KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 299 (330)
T ss_dssp ECCSSCCCEECTTTGGGSTTCCEEECCSSCCS--SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEE
T ss_pred ECCCCcCceeChhhccCCCCCCEEECCCCcCc--cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceE
Confidence 99999998766678999999999999977654 344456778999999999888887653221 247899999
Q ss_pred EccccCccC---CcccccCCCCCCeeEecccC
Q 036584 888 IAAEIPKLK---IPERLRSVPPPAEWECEDSR 916 (919)
Q Consensus 888 l~~nC~~l~---lp~~l~~L~~L~~l~~~~~~ 916 (919)
+.+ +|-.. .|..+..+.+|+.+++++++
T Consensus 300 l~~-N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 300 LFS-NPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCS-SSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred eec-CcccccccCccccccccceeEEEecccC
Confidence 998 44322 56788889999999998753
No 37
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.81 E-value=4.1e-19 Score=209.69 Aligned_cols=333 Identities=15% Similarity=0.073 Sum_probs=197.3
Q ss_pred CCCCeeEEEEecCCCCcccccc--CCCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchh
Q 036584 557 VISSCRRQAIYSHSPSYFWLHH--GNSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNR 634 (919)
Q Consensus 557 ~~~~~r~l~l~~~~~~~~~~~~--~~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~ 634 (919)
.+..+++|.+..+......... .+++|++|.+.++. .....+..|.++++|++|+|++ +. +. .
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~------i~~i~~~~~~~l~~L~~L~L~~-n~-----l~---~ 90 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE------IQTIEDGAYQSLSHLSTLILTG-NP-----IQ---S 90 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC------CCEECTTTTTTCTTCCEEECTT-CC-----CC---E
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEECCCCc------CCccCcccccCchhCCEEeCcC-Cc-----CC---c
Confidence 4668999999977766554332 28999999999982 3345567789999999999999 87 76 4
Q ss_pred h-hhhhcccccceEEeecCCCccccCh-hhhcCCCCcEEecCCCCCcccc--cCccccccccccccccc---cc--cccC
Q 036584 635 L-SEKIGDLIHLKYLGLRNSNIGILPS-SIVKLQRLQTLDFSGDVGCPVE--LPIEINMMQELRHLIGN---FK--GTLP 705 (919)
Q Consensus 635 l-p~~i~~L~~Lr~L~L~~~~i~~LP~-~l~~L~~L~~L~L~~~~~~~~~--lp~~i~~L~~L~~L~~~---~~--~~~~ 705 (919)
+ |..++++.+|++|++++|.++.+|. .++++++|++|++++| .+.. +|..+.++++|++|... .. .+..
T Consensus 91 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n--~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~ 168 (570)
T 2z63_A 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN--LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (570)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS--CCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGG
T ss_pred cCHhhhcCccccccccccccccccCCCccccccccccEEecCCC--ccceecChhhhcccCCCCEEeCcCCccceecHHH
Confidence 4 4779999999999999999988886 6999999999999999 6654 78999999999999432 11 1233
Q ss_pred CCCcCcC----ccccccccc--ccchhhccCCCCCCeEEeeecCcc----------------------------------
Q 036584 706 IENLTNL----QTLKYVQSK--SWNKVNTAKLVNLRDLHIEEDEDE---------------------------------- 745 (919)
Q Consensus 706 i~~l~~L----~~L~~~~~~--~~~~~~l~~l~~L~~L~i~~~~~~---------------------------------- 745 (919)
++.+++| ..|++..+. ......+..+ +|+.|.+.++...
T Consensus 169 ~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~ 247 (570)
T 2z63_A 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247 (570)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECC
T ss_pred ccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcc
Confidence 5556666 555555444 1111112211 3444444332100
Q ss_pred ---------------------ccccccchhhHHhhcCCCcEEEEeecCCCCccCcCCCCCCCCceeEEEceec-CCCCcc
Q 036584 746 ---------------------WEGETVFSFESIAKLKNLRFLSVKLLDANSFASLQPLSHCQCLVDLRLSGRM-KKLPED 803 (919)
Q Consensus 746 ---------------------~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~ 803 (919)
..... .+..+..+++|+.|.+.++....++ ..+..+ +|++|+++++. ..+|.+
T Consensus 248 ~~~~~~l~~l~l~~l~l~~~~~~~~~--~~~~~~~l~~L~~L~l~~~~l~~l~--~~~~~~-~L~~L~l~~n~~~~l~~~ 322 (570)
T 2z63_A 248 KSALEGLCNLTIEEFRLAYLDYYLDD--IIDLFNCLTNVSSFSLVSVTIERVK--DFSYNF-GWQHLELVNCKFGQFPTL 322 (570)
T ss_dssp TTTTGGGGGSEEEEEEEEETTEEESC--STTTTGGGTTCSEEEEESCEECSCC--BCCSCC-CCSEEEEESCBCSSCCBC
T ss_pred hhhhccccccchhhhhhhcchhhhhh--chhhhcCcCcccEEEecCccchhhh--hhhccC-CccEEeeccCcccccCcc
Confidence 00000 0133455566666666543222111 012222 44444444432 233321
Q ss_pred --------------------hhccCCCcceEEEEccCCCCCC--chhhhcCCCCCeEEEeeccccCeeEEEcCCCCcccc
Q 036584 804 --------------------MHVFLPNLECLSLSVPYPKEDP--MPALEMLPNLIILDLHFRCHYVKKLGCRAEGFPLLE 861 (919)
Q Consensus 804 --------------------~~~l~~~L~~L~L~~~~l~~~~--~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~f~~L~ 861 (919)
...+ ++|++|++++|.+.... +..+..+++|++|++++|.... ++.....+++|+
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~l~~L~ 399 (570)
T 2z63_A 323 KLKSLKRLTFTSNKGGNAFSEVDL-PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQLE 399 (570)
T ss_dssp BCSSCCEEEEESCBSCCBCCCCBC-TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE--EEEEEETCTTCC
T ss_pred cccccCEEeCcCCccccccccccC-CCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc--ccccccccCCCC
Confidence 1222 55555555555554322 3445556666666666443322 122244566666
Q ss_pred eeEEecCCcccEEE--ccCCcccccceEEccccCccC-CcccccCCCCCCeeEecccC
Q 036584 862 ILQLDADGLVEWQV--EEGAMPVLRGLKIAAEIPKLK-IPERLRSVPPPAEWECEDSR 916 (919)
Q Consensus 862 ~L~l~~~~l~~~~~--~~~~~p~L~~L~l~~nC~~l~-lp~~l~~L~~L~~l~~~~~~ 916 (919)
.|+++.+.+..... ....+++|+.|++++ |.-.. .|..+..+++|+.++++++.
T Consensus 400 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~ 456 (570)
T 2z63_A 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISH-THTRVAFNGIFNGLSSLEVLKMAGNS 456 (570)
T ss_dssp EEECTTSEEESCTTSCTTTTCTTCCEEECTT-SCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred EEEccCCccccccchhhhhcCCCCCEEeCcC-CcccccchhhhhcCCcCcEEECcCCc
Confidence 66666444443321 234567777777776 43222 66667777777777777653
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.80 E-value=4.7e-19 Score=201.55 Aligned_cols=272 Identities=16% Similarity=0.145 Sum_probs=209.2
Q ss_pred hhhccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccChhhhcCCCCcEEecCCCCCcccccC
Q 036584 605 LLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVELP 684 (919)
Q Consensus 605 ~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~lp 684 (919)
..+.+++.|++|++++ +. +. .+| .++.+++|++|+|++|.++.+| ++.+++|++|++++| .+..+|
T Consensus 36 ~~~~~l~~L~~L~Ls~-n~-----l~---~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N--~l~~~~ 101 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHN-SS-----IT---DMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN--KLTNLD 101 (457)
T ss_dssp EEHHHHTTCCEEECCS-SC-----CC---CCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS--CCSCCC
T ss_pred cChhHcCCCCEEEccC-CC-----cc---cCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC--CCceee
Confidence 3467889999999999 88 87 676 7999999999999999998887 899999999999999 788886
Q ss_pred cccccccccccccc---ccccccCCCCcCcCcccccccccccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcC
Q 036584 685 IEINMMQELRHLIG---NFKGTLPIENLTNLQTLKYVQSKSWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLK 761 (919)
Q Consensus 685 ~~i~~L~~L~~L~~---~~~~~~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~ 761 (919)
+..+++|++|.. .... .+++.+++|+.|++..+..... .++.+++|+.|+++.+... .. ..+..++
T Consensus 102 --~~~l~~L~~L~L~~N~l~~-l~~~~l~~L~~L~l~~N~l~~l-~l~~l~~L~~L~l~~n~~~---~~----~~~~~l~ 170 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTK-LDVSQNPLLTYLNCARNTLTEI-DVSHNTQLTELDCHLNKKI---TK----LDVTPQT 170 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSC-CCCTTCTTCCEEECTTSCCSCC-CCTTCTTCCEEECTTCSCC---CC----CCCTTCT
T ss_pred --cCCCCcCCEEECCCCcCCe-ecCCCCCcCCEEECCCCcccee-ccccCCcCCEEECCCCCcc---cc----cccccCC
Confidence 889999999943 2222 3589999999999988873333 5889999999999987421 11 1356788
Q ss_pred CCcEEEEeecCCCCccCcCCCCCCCCceeEEEceec-CCCCcchhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEE
Q 036584 762 NLRFLSVKLLDANSFASLQPLSHCQCLVDLRLSGRM-KKLPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDL 840 (919)
Q Consensus 762 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L 840 (919)
+|+.|++++ +.+..++ +..+++|+.|++++|. ..++ +..+ ++|+.|+|++|.+++. + ++.+++|+.|++
T Consensus 171 ~L~~L~ls~---n~l~~l~-l~~l~~L~~L~l~~N~l~~~~--l~~l-~~L~~L~Ls~N~l~~i--p-~~~l~~L~~L~l 240 (457)
T 3bz5_A 171 QLTTLDCSF---NKITELD-VSQNKLLNRLNCDTNNITKLD--LNQN-IQLTFLDCSSNKLTEI--D-VTPLTQLTYFDC 240 (457)
T ss_dssp TCCEEECCS---SCCCCCC-CTTCTTCCEEECCSSCCSCCC--CTTC-TTCSEEECCSSCCSCC--C-CTTCTTCSEEEC
T ss_pred cCCEEECCC---Cccceec-cccCCCCCEEECcCCcCCeec--cccC-CCCCEEECcCCccccc--C-ccccCCCCEEEe
Confidence 999999954 4444443 7788999999999875 4443 5565 9999999999999863 2 889999999999
Q ss_pred eeccccCeeEEEcCCCCcccceeEEecCCcccEE---------EccCCcccccceEEccccCccC-Cccc--------cc
Q 036584 841 HFRCHYVKKLGCRAEGFPLLEILQLDADGLVEWQ---------VEEGAMPVLRGLKIAAEIPKLK-IPER--------LR 902 (919)
Q Consensus 841 ~~~~~~~~~~~~~~~~f~~L~~L~l~~~~l~~~~---------~~~~~~p~L~~L~l~~nC~~l~-lp~~--------l~ 902 (919)
++|.+... ..+.|++|+.|.++.++++.+. +..+.+++|+.|++++ |+.+. +|.. +.
T Consensus 241 ~~N~l~~~----~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~-n~~l~~l~~~~~~L~~L~l~ 315 (457)
T 3bz5_A 241 SVNPLTEL----DVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTH-NTQLYLLDCQAAGITELDLS 315 (457)
T ss_dssp CSSCCSCC----CCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTT-CTTCCEEECTTCCCSCCCCT
T ss_pred eCCcCCCc----CHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCC-CcccceeccCCCcceEechh
Confidence 97776543 2456787777766544444332 1245689999999999 87766 6642 45
Q ss_pred CCCCCCeeEecccC
Q 036584 903 SVPPPAEWECEDSR 916 (919)
Q Consensus 903 ~L~~L~~l~~~~~~ 916 (919)
.+++|+.++++++.
T Consensus 316 ~~~~L~~L~L~~N~ 329 (457)
T 3bz5_A 316 QNPKLVYLYLNNTE 329 (457)
T ss_dssp TCTTCCEEECTTCC
T ss_pred hcccCCEEECCCCc
Confidence 55678888877653
No 39
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=4.2e-19 Score=193.08 Aligned_cols=230 Identities=19% Similarity=0.210 Sum_probs=166.3
Q ss_pred cCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccChhhhcCCCCcEEecCCCCCcccccCcccc
Q 036584 609 RFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVELPIEIN 688 (919)
Q Consensus 609 ~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~~i~ 688 (919)
....+++|+|++ +. +. .+|..++++++|++|+|++|.+..+|..++++++|++|++++| .+..+|..+.
T Consensus 79 ~~~~l~~L~L~~-n~-----l~---~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n--~l~~lp~~l~ 147 (328)
T 4fcg_A 79 TQPGRVALELRS-VP-----LP---QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN--PLRALPASIA 147 (328)
T ss_dssp TSTTCCEEEEES-SC-----CS---SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC--CCCCCCGGGG
T ss_pred cccceeEEEccC-CC-----ch---hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC--ccccCcHHHh
Confidence 346788888888 77 77 7888888888999999998888888888888899999999888 6667776655
Q ss_pred ccccccccccccccccCCCCcCcCcccccccccccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEE
Q 036584 689 MMQELRHLIGNFKGTLPIENLTNLQTLKYVQSKSWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSV 768 (919)
Q Consensus 689 ~L~~L~~L~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 768 (919)
++++|++| ++++|... ...+ ..+ ....+
T Consensus 148 ~l~~L~~L-----------------------------------------~L~~n~~~--~~~p---~~~------~~~~~ 175 (328)
T 4fcg_A 148 SLNRLREL-----------------------------------------SIRACPEL--TELP---EPL------ASTDA 175 (328)
T ss_dssp GCTTCCEE-----------------------------------------EEEEETTC--CCCC---SCS------EEEC-
T ss_pred cCcCCCEE-----------------------------------------ECCCCCCc--cccC---hhH------hhccc
Confidence 54444444 33332100 0000 000 00000
Q ss_pred eecCCCCccCcCCCCCCCCceeEEEceec-CCCCcchhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccccC
Q 036584 769 KLLDANSFASLQPLSHCQCLVDLRLSGRM-KKLPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHYV 847 (919)
Q Consensus 769 ~~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~ 847 (919)
...+..+++|++|++++|. ..+|.++..+ ++|++|+|++|.+.+ .++.++.+++|+.|+|++|....
T Consensus 176 ----------~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l-~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~ 243 (328)
T 4fcg_A 176 ----------SGEHQGLVNLQSLRLEWTGIRSLPASIANL-QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALR 243 (328)
T ss_dssp ----------CCCEEESTTCCEEEEEEECCCCCCGGGGGC-TTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCC
T ss_pred ----------hhhhccCCCCCEEECcCCCcCcchHhhcCC-CCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchh
Confidence 0113345677777777764 5678787777 899999999998874 55678899999999998655433
Q ss_pred eeEEEcCCCCcccceeEEe-cCCcccEEEccCCcccccceEEccccCccC-CcccccCCCCCCeeEeccc
Q 036584 848 KKLGCRAEGFPLLEILQLD-ADGLVEWQVEEGAMPVLRGLKIAAEIPKLK-IPERLRSVPPPAEWECEDS 915 (919)
Q Consensus 848 ~~~~~~~~~f~~L~~L~l~-~~~l~~~~~~~~~~p~L~~L~l~~nC~~l~-lp~~l~~L~~L~~l~~~~~ 915 (919)
.++...+.+++|+.|+++ |+.+..++.....+++|+.|+|++ |+.+. +|..+.+|++|+.+.+...
T Consensus 244 -~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~-n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 244 -NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG-CVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp -BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTT-CTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred -hhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCC-CCchhhccHHHhhccCceEEeCCHH
Confidence 445556788999999999 566666666667899999999999 88888 9999999999999988753
No 40
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.80 E-value=5.9e-19 Score=212.88 Aligned_cols=269 Identities=17% Similarity=0.135 Sum_probs=132.1
Q ss_pred hhcccccceEEeecCCCccccC-hhhhcCCCCcEEecCCCCCcccccCcc-ccc--ccccccccc---cc--ccccCCCC
Q 036584 638 KIGDLIHLKYLGLRNSNIGILP-SSIVKLQRLQTLDFSGDVGCPVELPIE-INM--MQELRHLIG---NF--KGTLPIEN 708 (919)
Q Consensus 638 ~i~~L~~Lr~L~L~~~~i~~LP-~~l~~L~~L~~L~L~~~~~~~~~lp~~-i~~--L~~L~~L~~---~~--~~~~~i~~ 708 (919)
.+..+++|++|++++|.+..++ ..+..+++|++|++++|...+..+|.. +.. .++|+.|.. .. ..+..+..
T Consensus 324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 403 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403 (680)
T ss_dssp TTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred hcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence 3445555555555555553333 235555555555555552123333321 111 124444421 11 11223555
Q ss_pred cCcCcccccccccc---cchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCc-CCCCC
Q 036584 709 LTNLQTLKYVQSKS---WNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASL-QPLSH 784 (919)
Q Consensus 709 l~~L~~L~~~~~~~---~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~ 784 (919)
+++|+.|++..+.. .....+..+++|+.|+++++... ... +..+..+++|+.|.+.++....+... ..+..
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~ 478 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL---QLT--RNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEE---ECC--TTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT
T ss_pred CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcc---eeC--hhhhhcCcccccchhccccccccccCCccccc
Confidence 66666666555541 11244555666666666655311 111 13445556666666643322211111 22455
Q ss_pred CCCceeEEEceec-CCCCc-chhccCCCcceEEEEccCCCCC--------CchhhhcCCCCCeEEEeeccccCeeEEE-c
Q 036584 785 CQCLVDLRLSGRM-KKLPE-DMHVFLPNLECLSLSVPYPKED--------PMPALEMLPNLIILDLHFRCHYVKKLGC-R 853 (919)
Q Consensus 785 ~~~L~~L~L~~~~-~~~p~-~~~~l~~~L~~L~L~~~~l~~~--------~~~~l~~lp~L~~L~L~~~~~~~~~~~~-~ 853 (919)
+++|+.|++++|. ..+|. .+..+ ++|+.|+|++|.++.. +...++.+++|+.|+|++|.+. .++. .
T Consensus 479 l~~L~~L~Ls~N~l~~i~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~--~i~~~~ 555 (680)
T 1ziw_A 479 LRNLTILDLSNNNIANINDDMLEGL-EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD--EIPVEV 555 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC--CCCTTT
T ss_pred CCCCCEEECCCCCCCcCChhhhccc-cccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC--CCCHHH
Confidence 6666666666653 33333 23344 6666666666665431 1123566666666666655433 2221 2
Q ss_pred CCCCcccceeEEecCCcccEEEcc-CCcccccceEEccccCccC-Ccc-ccc-CCCCCCeeEecccC
Q 036584 854 AEGFPLLEILQLDADGLVEWQVEE-GAMPVLRGLKIAAEIPKLK-IPE-RLR-SVPPPAEWECEDSR 916 (919)
Q Consensus 854 ~~~f~~L~~L~l~~~~l~~~~~~~-~~~p~L~~L~l~~nC~~l~-lp~-~l~-~L~~L~~l~~~~~~ 916 (919)
..++++|+.|+++.|+++.++... ..+++|+.|++++ +.++ +|. .+. .+++|+.+++++++
T Consensus 556 ~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~--N~l~~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 556 FKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK--NLITSVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTT--SCCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred cccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCC--CcCCccChhHhcccccccCEEEccCCC
Confidence 345666677777666666554332 3456777777766 3555 433 333 56666676666643
No 41
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.80 E-value=3.6e-19 Score=203.85 Aligned_cols=316 Identities=14% Similarity=0.041 Sum_probs=220.8
Q ss_pred CCCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhh-hhhhcccccceEEeecCCCccc
Q 036584 579 GNSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRL-SEKIGDLIHLKYLGLRNSNIGI 657 (919)
Q Consensus 579 ~~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~l-p~~i~~L~~Lr~L~L~~~~i~~ 657 (919)
..++++.|.+.++. .....+..|.++++|++|+|++ +. +.. .+ |..+.++++|++|+|++|.+..
T Consensus 28 l~~~l~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~L~~-n~-----~~~--~i~~~~~~~l~~L~~L~Ls~n~l~~ 93 (455)
T 3v47_A 28 LPAHVNYVDLSLNS------IAELNETSFSRLQDLQFLKVEQ-QT-----PGL--VIRNNTFRGLSSLIILKLDYNQFLQ 93 (455)
T ss_dssp CCTTCCEEECCSSC------CCEECTTTTSSCTTCCEEECCC-CS-----TTC--EECTTTTTTCTTCCEEECTTCTTCE
T ss_pred CCCccCEEEecCCc------cCcCChhHhccCccccEEECcC-Cc-----ccc--eECcccccccccCCEEeCCCCccCc
Confidence 35889999999882 3345577789999999999999 76 431 34 5668999999999999999966
Q ss_pred c-ChhhhcCCCCcEEecCCCCCcccc-cCcc--cccccccccccc---cccc--ccC-CCCcCcCccccccccc--ccch
Q 036584 658 L-PSSIVKLQRLQTLDFSGDVGCPVE-LPIE--INMMQELRHLIG---NFKG--TLP-IENLTNLQTLKYVQSK--SWNK 725 (919)
Q Consensus 658 L-P~~l~~L~~L~~L~L~~~~~~~~~-lp~~--i~~L~~L~~L~~---~~~~--~~~-i~~l~~L~~L~~~~~~--~~~~ 725 (919)
+ |..++++++|++|++++| .+.. +|.. +..+++|++|.. .... +.. ++.+++|++|++..+. ....
T Consensus 94 ~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 171 (455)
T 3v47_A 94 LETGAFNGLANLEVLTLTQC--NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTS--CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred cChhhccCcccCCEEeCCCC--CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh
Confidence 5 778999999999999999 5654 4444 788888888842 2222 222 6788888888887776 2333
Q ss_pred hhccCC--CCCCeEEeeecCccccccccch---hhHHhhcCCCcEEEEeecCCCCccCc-----CCCCCCCCceeEEEce
Q 036584 726 VNTAKL--VNLRDLHIEEDEDEWEGETVFS---FESIAKLKNLRFLSVKLLDANSFASL-----QPLSHCQCLVDLRLSG 795 (919)
Q Consensus 726 ~~l~~l--~~L~~L~i~~~~~~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~-----~~l~~~~~L~~L~L~~ 795 (919)
..+..+ .+|+.|.+..+........... ...+..+++|+.|+++++ .+... ......++|+.|++++
T Consensus 172 ~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n---~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 172 EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN---GFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTS---CCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred hhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCC---cccccchhhhhccccccceeeEeecc
Confidence 444444 5677777777653211111100 012334567888887433 32211 1122347888898887
Q ss_pred ecC--------CC----Ccchhcc-CCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccccCeeEEEcCCCCcccce
Q 036584 796 RMK--------KL----PEDMHVF-LPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHYVKKLGCRAEGFPLLEI 862 (919)
Q Consensus 796 ~~~--------~~----p~~~~~l-~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~f~~L~~ 862 (919)
+.. .+ +..+..+ +++|+.|+|++|.+.+..+..++.+++|+.|+|++|... ...+.....+++|+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~ 327 (455)
T 3v47_A 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLK 327 (455)
T ss_dssp CTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCE
T ss_pred ccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccc-ccChhHhcCcccCCE
Confidence 621 01 1111111 378999999999998877888999999999999966543 222334567899999
Q ss_pred eEEecCCcccEEE-ccCCcccccceEEccccCccC--CcccccCCCCCCeeEecccC
Q 036584 863 LQLDADGLVEWQV-EEGAMPVLRGLKIAAEIPKLK--IPERLRSVPPPAEWECEDSR 916 (919)
Q Consensus 863 L~l~~~~l~~~~~-~~~~~p~L~~L~l~~nC~~l~--lp~~l~~L~~L~~l~~~~~~ 916 (919)
|+++.|.++.++. ....+++|+.|++++ +.++ .|..+..+++|+++++++++
T Consensus 328 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~--N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSY--NHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp EECCSSCCCEECGGGGTTCTTCCEEECCS--SCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCccCCcChhHhcCcccCCEEECCC--CcccccChhhccccccccEEECCCCc
Confidence 9999888887643 346799999999998 4677 68899999999999999864
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=3.7e-19 Score=194.45 Aligned_cols=283 Identities=19% Similarity=0.222 Sum_probs=190.9
Q ss_pred CcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhh-hhhhcccccceEEeecCCCcccc-
Q 036584 581 SLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRL-SEKIGDLIHLKYLGLRNSNIGIL- 658 (919)
Q Consensus 581 ~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~l-p~~i~~L~~Lr~L~L~~~~i~~L- 658 (919)
.+++.+.+.++. . ..+|..+ .+.|++|+|++ +. +. .+ |..++++++|++|+|++|.++.+
T Consensus 33 c~l~~l~~~~~~------l-~~ip~~~--~~~l~~L~l~~-n~-----i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~ 94 (332)
T 2ft3_A 33 CHLRVVQCSDLG------L-KAVPKEI--SPDTTLLDLQN-ND-----IS---ELRKDDFKGLQHLYALVLVNNKISKIH 94 (332)
T ss_dssp EETTEEECCSSC------C-SSCCSCC--CTTCCEEECCS-SC-----CC---EECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred ccCCEEECCCCC------c-cccCCCC--CCCCeEEECCC-Cc-----CC---ccCHhHhhCCCCCcEEECCCCccCccC
Confidence 468888887762 1 1333322 35788899998 77 66 45 45788899999999999988666
Q ss_pred ChhhhcCCCCcEEecCCCCCcccccCccccccccccccccccccccCCCCcCcCccccccccc--ccchhhccCCCCCCe
Q 036584 659 PSSIVKLQRLQTLDFSGDVGCPVELPIEINMMQELRHLIGNFKGTLPIENLTNLQTLKYVQSK--SWNKVNTAKLVNLRD 736 (919)
Q Consensus 659 P~~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~i~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~ 736 (919)
|..+..+++|++|++++| .+..+|..+. ++|++| ++..+. ......+..+++|+.
T Consensus 95 ~~~~~~l~~L~~L~L~~n--~l~~l~~~~~--~~L~~L-------------------~l~~n~i~~~~~~~~~~l~~L~~ 151 (332)
T 2ft3_A 95 EKAFSPLRKLQKLYISKN--HLVEIPPNLP--SSLVEL-------------------RIHDNRIRKVPKGVFSGLRNMNC 151 (332)
T ss_dssp GGGSTTCTTCCEEECCSS--CCCSCCSSCC--TTCCEE-------------------ECCSSCCCCCCSGGGSSCSSCCE
T ss_pred HhHhhCcCCCCEEECCCC--cCCccCcccc--ccCCEE-------------------ECCCCccCccCHhHhCCCccCCE
Confidence 667888999999999988 7777887654 455554 333333 112234667777888
Q ss_pred EEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCcCCCCCCCCceeEEEceec-CCC-CcchhccCCCcceE
Q 036584 737 LHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASLQPLSHCQCLVDLRLSGRM-KKL-PEDMHVFLPNLECL 814 (919)
Q Consensus 737 L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~-p~~~~~l~~~L~~L 814 (919)
|+++++......... ..+..+ +|+.|+++++ .+..++. ..+++|++|++++|. ..+ |.++..+ ++|++|
T Consensus 152 L~l~~n~l~~~~~~~---~~~~~l-~L~~L~l~~n---~l~~l~~-~~~~~L~~L~l~~n~i~~~~~~~l~~l-~~L~~L 222 (332)
T 2ft3_A 152 IEMGGNPLENSGFEP---GAFDGL-KLNYLRISEA---KLTGIPK-DLPETLNELHLDHNKIQAIELEDLLRY-SKLYRL 222 (332)
T ss_dssp EECCSCCCBGGGSCT---TSSCSC-CCSCCBCCSS---BCSSCCS-SSCSSCSCCBCCSSCCCCCCTTSSTTC-TTCSCC
T ss_pred EECCCCccccCCCCc---ccccCC-ccCEEECcCC---CCCccCc-cccCCCCEEECCCCcCCccCHHHhcCC-CCCCEE
Confidence 887776532111111 344455 7888887443 3333222 223688888888874 333 3566666 899999
Q ss_pred EEEccCCCCCCchhhhcCCCCCeEEEeeccccCeeEEEcCCCCcccceeEEecCCcccEEEcc-------CCcccccceE
Q 036584 815 SLSVPYPKEDPMPALEMLPNLIILDLHFRCHYVKKLGCRAEGFPLLEILQLDADGLVEWQVEE-------GAMPVLRGLK 887 (919)
Q Consensus 815 ~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~l~~~~l~~~~~~~-------~~~p~L~~L~ 887 (919)
+|++|.+....+..++.+++|+.|+|++|... .++.....+++|+.|+++.|.++.++... ..++.|+.|+
T Consensus 223 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~ 300 (332)
T 2ft3_A 223 GLGHNQIRMIENGSLSFLPTLRELHLDNNKLS--RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS 300 (332)
T ss_dssp BCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC--BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEE
T ss_pred ECCCCcCCcCChhHhhCCCCCCEEECCCCcCe--ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceE
Confidence 99999888766678889999999999866553 34444567888999999977788764322 1257899999
Q ss_pred EccccCcc--C-CcccccCCCCCCeeEecccC
Q 036584 888 IAAEIPKL--K-IPERLRSVPPPAEWECEDSR 916 (919)
Q Consensus 888 l~~nC~~l--~-lp~~l~~L~~L~~l~~~~~~ 916 (919)
+.+ ++-. . .|..+..+++|+.+++++++
T Consensus 301 l~~-N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 301 LFN-NPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCS-SSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred eec-CcccccccCcccccccchhhhhhccccc
Confidence 998 6644 2 56778899999999998865
No 43
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.78 E-value=7.1e-19 Score=206.88 Aligned_cols=329 Identities=17% Similarity=0.151 Sum_probs=225.7
Q ss_pred CCCCeeEEEEecCCCCccccccC--CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchh
Q 036584 557 VISSCRRQAIYSHSPSYFWLHHG--NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNR 634 (919)
Q Consensus 557 ~~~~~r~l~l~~~~~~~~~~~~~--~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~ 634 (919)
.+..+++|.+..+.....+.... +++|++|.+.++. .....+..|..+++|++|+|++ +. +. .
T Consensus 50 ~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~------l~~~~~~~~~~l~~L~~L~Ls~-N~-----l~---~ 114 (562)
T 3a79_B 50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR------IRSLDFHVFLFNQDLEYLDVSH-NR-----LQ---N 114 (562)
T ss_dssp SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC------CCEECTTTTTTCTTCCEEECTT-SC-----CC---E
T ss_pred CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCC------CCcCCHHHhCCCCCCCEEECCC-Cc-----CC---c
Confidence 45789999999887776653322 8999999999982 3345677899999999999999 88 87 7
Q ss_pred hhhhhcccccceEEeecCCCccccC--hhhhcCCCCcEEecCCCCCcccccCccccccccc--ccccc---cc--cc--c
Q 036584 635 LSEKIGDLIHLKYLGLRNSNIGILP--SSIVKLQRLQTLDFSGDVGCPVELPIEINMMQEL--RHLIG---NF--KG--T 703 (919)
Q Consensus 635 lp~~i~~L~~Lr~L~L~~~~i~~LP--~~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~L--~~L~~---~~--~~--~ 703 (919)
+|.. .+++|++|+|++|.++.+| ..++++++|++|++++| .+.. ..+..+++| +.|.. .. .. +
T Consensus 115 lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n--~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~ 188 (562)
T 3a79_B 115 ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA--KFRQ--LDLLPVAHLHLSCILLDLVSYHIKGGET 188 (562)
T ss_dssp ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS--BCCT--TTTGGGTTSCEEEEEEEESSCCCCSSSC
T ss_pred cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC--cccc--CchhhhhhceeeEEEeecccccccccCc
Confidence 8877 8999999999999997764 78999999999999999 5543 234455555 65521 11 00 0
Q ss_pred cC--------------------------CCCcCcCccccccccc------ccchhhccC---------------------
Q 036584 704 LP--------------------------IENLTNLQTLKYVQSK------SWNKVNTAK--------------------- 730 (919)
Q Consensus 704 ~~--------------------------i~~l~~L~~L~~~~~~------~~~~~~l~~--------------------- 730 (919)
.. +..+++|+.|++..+. ......+..
T Consensus 189 ~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~ 268 (562)
T 3a79_B 189 ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVK 268 (562)
T ss_dssp CEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHH
T ss_pred ccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHH
Confidence 01 1233344444433321 000000011
Q ss_pred ------CCCCCeEEeeecCcc-c-ccc----------------------ccc--hhhHH---------------------
Q 036584 731 ------LVNLRDLHIEEDEDE-W-EGE----------------------TVF--SFESI--------------------- 757 (919)
Q Consensus 731 ------l~~L~~L~i~~~~~~-~-~~~----------------------~~~--~~~~l--------------------- 757 (919)
.++|+.|+++++... . ... ..+ ....+
T Consensus 269 ~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 348 (562)
T 3a79_B 269 LFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC 348 (562)
T ss_dssp HHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCC
T ss_pred HHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccC
Confidence 113334444333210 0 000 000 00011
Q ss_pred -hhcCCCcEEEEeecCCCCccC--cCCCCCCCCceeEEEceec-CCCC---cchhccCCCcceEEEEccCCCC-CCchhh
Q 036584 758 -AKLKNLRFLSVKLLDANSFAS--LQPLSHCQCLVDLRLSGRM-KKLP---EDMHVFLPNLECLSLSVPYPKE-DPMPAL 829 (919)
Q Consensus 758 -~~l~~L~~L~l~~~~~~~~~~--~~~l~~~~~L~~L~L~~~~-~~~p---~~~~~l~~~L~~L~L~~~~l~~-~~~~~l 829 (919)
..+++|+.|+++++ .+.. ...+..+++|+.|++++|. ..+| ..+..+ ++|+.|+|++|.+.. .+...+
T Consensus 349 ~~~l~~L~~L~l~~n---~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~ 424 (562)
T 3a79_B 349 PPSPSSFTFLNFTQN---VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNM-SSLETLDVSLNSLNSHAYDRTC 424 (562)
T ss_dssp CSSCCCCCEEECCSS---CCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTC-TTCCEEECTTSCCBSCCSSCCC
T ss_pred ccCCCCceEEECCCC---ccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCC-CCCCEEECCCCcCCCccChhhh
Confidence 56789999998543 3433 2347789999999999975 4343 456666 999999999999986 444458
Q ss_pred hcCCCCCeEEEeeccccCeeEEEcCCCC-cccceeEEecCCcccEEEccCCcccccceEEccccCccC-Cccc-ccCCCC
Q 036584 830 EMLPNLIILDLHFRCHYVKKLGCRAEGF-PLLEILQLDADGLVEWQVEEGAMPVLRGLKIAAEIPKLK-IPER-LRSVPP 906 (919)
Q Consensus 830 ~~lp~L~~L~L~~~~~~~~~~~~~~~~f-~~L~~L~l~~~~l~~~~~~~~~~p~L~~L~l~~nC~~l~-lp~~-l~~L~~ 906 (919)
..+++|+.|+|++|.+.... ...+ ++|+.|+++.|.++.++.....+++|+.|++++ ++++ +|.. +..+++
T Consensus 425 ~~l~~L~~L~l~~n~l~~~~----~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~--N~l~~l~~~~~~~l~~ 498 (562)
T 3a79_B 425 AWAESILVLNLSSNMLTGSV----FRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVAS--NQLKSVPDGVFDRLTS 498 (562)
T ss_dssp CCCTTCCEEECCSSCCCGGG----GSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCS--SCCCCCCTTSTTTCTT
T ss_pred cCcccCCEEECCCCCCCcch----hhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCC--CCCCCCCHHHHhcCCC
Confidence 89999999999977654321 2334 699999999889998887777899999999998 6788 9987 899999
Q ss_pred CCeeEecccC
Q 036584 907 PAEWECEDSR 916 (919)
Q Consensus 907 L~~l~~~~~~ 916 (919)
|+.+++++++
T Consensus 499 L~~L~l~~N~ 508 (562)
T 3a79_B 499 LQYIWLHDNP 508 (562)
T ss_dssp CCCEECCSCC
T ss_pred CCEEEecCCC
Confidence 9999999865
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.78 E-value=1.9e-18 Score=187.96 Aligned_cols=227 Identities=22% Similarity=0.183 Sum_probs=155.6
Q ss_pred CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccC
Q 036584 580 NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILP 659 (919)
Q Consensus 580 ~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP 659 (919)
..+++.|.+.++. . . .+|..+.++++|++|+|++ +. +. .+|..++++++|++|+|++|.++.+|
T Consensus 80 ~~~l~~L~L~~n~-----l-~-~lp~~l~~l~~L~~L~L~~-n~-----l~---~lp~~~~~l~~L~~L~Ls~n~l~~lp 143 (328)
T 4fcg_A 80 QPGRVALELRSVP-----L-P-QFPDQAFRLSHLQHMTIDA-AG-----LM---ELPDTMQQFAGLETLTLARNPLRALP 143 (328)
T ss_dssp STTCCEEEEESSC-----C-S-SCCSCGGGGTTCSEEEEES-SC-----CC---CCCSCGGGGTTCSEEEEESCCCCCCC
T ss_pred ccceeEEEccCCC-----c-h-hcChhhhhCCCCCEEECCC-CC-----cc---chhHHHhccCCCCEEECCCCccccCc
Confidence 5678888888872 1 2 4566677799999999999 88 87 89999999999999999999999999
Q ss_pred hhhhcCCCCcEEecCCCCCcccccCccccccccccccccccccccCCCCcCcCccccccccc-ccchhhccCCCCCCeEE
Q 036584 660 SSIVKLQRLQTLDFSGDVGCPVELPIEINMMQELRHLIGNFKGTLPIENLTNLQTLKYVQSK-SWNKVNTAKLVNLRDLH 738 (919)
Q Consensus 660 ~~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~i~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~ 738 (919)
..++++++|++|++++| ..+..+|..+.... ....++.+++|+.|++..+. ...+..++.+++|+.|+
T Consensus 144 ~~l~~l~~L~~L~L~~n-~~~~~~p~~~~~~~----------~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~ 212 (328)
T 4fcg_A 144 ASIASLNRLRELSIRAC-PELTELPEPLASTD----------ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLK 212 (328)
T ss_dssp GGGGGCTTCCEEEEEEE-TTCCCCCSCSEEEC-----------CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEE
T ss_pred HHHhcCcCCCEEECCCC-CCccccChhHhhcc----------chhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEE
Confidence 99999999999999997 46778887665411 01113445555666555554 22334466667777777
Q ss_pred eeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCcCCCCCCCCceeEEEceec--CCCCcchhccCCCcceEEE
Q 036584 739 IEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASLQPLSHCQCLVDLRLSGRM--KKLPEDMHVFLPNLECLSL 816 (919)
Q Consensus 739 i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~--~~~p~~~~~l~~~L~~L~L 816 (919)
++++... ... ..+..+++|+.|+++++..... ....+..+++|++|+|++|. +.+|.++..+ ++|++|+|
T Consensus 213 L~~N~l~---~l~---~~l~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l-~~L~~L~L 284 (328)
T 4fcg_A 213 IRNSPLS---ALG---PAIHHLPKLEELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL-TQLEKLDL 284 (328)
T ss_dssp EESSCCC---CCC---GGGGGCTTCCEEECTTCTTCCB-CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGC-TTCCEEEC
T ss_pred ccCCCCC---cCc---hhhccCCCCCEEECcCCcchhh-hHHHhcCCCCCCEEECCCCCchhhcchhhhcC-CCCCEEeC
Confidence 7766422 222 4466667777777743321110 11225566777777777653 4566666665 77777777
Q ss_pred EccCCCCCCchhhhcCCCCCeEEEe
Q 036584 817 SVPYPKEDPMPALEMLPNLIILDLH 841 (919)
Q Consensus 817 ~~~~l~~~~~~~l~~lp~L~~L~L~ 841 (919)
++|.+.+..|..++++++|+.+.+.
T Consensus 285 ~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 285 RGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp TTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred CCCCchhhccHHHhhccCceEEeCC
Confidence 7777666677777777777777766
No 45
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.77 E-value=6.9e-18 Score=201.92 Aligned_cols=123 Identities=15% Similarity=0.085 Sum_probs=95.6
Q ss_pred CCCCeeEEEEecCCCCccccccC--CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchh
Q 036584 557 VISSCRRQAIYSHSPSYFWLHHG--NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNR 634 (919)
Q Consensus 557 ~~~~~r~l~l~~~~~~~~~~~~~--~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~ 634 (919)
.|..+++|.+..+....++.... +++|+.|.+.++. +....+..|.++++|++|+|++ |. +. .
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~------i~~i~~~~f~~L~~L~~L~Ls~-N~-----l~---~ 114 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE------IQTIEDGAYQSLSHLSTLILTG-NP-----IQ---S 114 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC------CCEECTTTTTTCTTCCEEECTT-CC-----CC---E
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc------CCCcChhHhcCCCCCCEEEccC-Cc-----CC---C
Confidence 56789999999887777664332 8899999998882 3345566788899999999999 77 77 6
Q ss_pred hhh-hhcccccceEEeecCCCccccCh-hhhcCCCCcEEecCCCCCccc--ccCcccccccccccc
Q 036584 635 LSE-KIGDLIHLKYLGLRNSNIGILPS-SIVKLQRLQTLDFSGDVGCPV--ELPIEINMMQELRHL 696 (919)
Q Consensus 635 lp~-~i~~L~~Lr~L~L~~~~i~~LP~-~l~~L~~L~~L~L~~~~~~~~--~lp~~i~~L~~L~~L 696 (919)
+|. .|.+|.+|++|+|++|.++.+|. .+++|++|++|++++| .+. .+|..+..+++|++|
T Consensus 115 l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N--~l~~~~~~~~~~~l~~L~~L 178 (635)
T 4g8a_A 115 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN--LIQSFKLPEYFSNLTNLEHL 178 (635)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS--CCCCCCCCGGGGGCTTCCEE
T ss_pred CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC--ccccCCCchhhccchhhhhh
Confidence 654 57888999999999998888876 4788888999999888 554 356677777777777
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.76 E-value=1e-18 Score=188.96 Aligned_cols=242 Identities=15% Similarity=0.162 Sum_probs=151.1
Q ss_pred CcccEEEEecccccccccccc--cchhhhccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCcc-c
Q 036584 581 SLARSLLLFNQWWDETLGVKR--HLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIG-I 657 (919)
Q Consensus 581 ~~lrsL~~~~~~~~~~~~~~~--~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~-~ 657 (919)
.+++.|.+.++. ... .+|..+.++++|++|+|++++. +.. .+|..++++++|++|+|++|.+. .
T Consensus 50 ~~l~~L~L~~~~------l~~~~~~~~~l~~l~~L~~L~L~~~n~-----l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~ 116 (313)
T 1ogq_A 50 YRVNNLDLSGLN------LPKPYPIPSSLANLPYLNFLYIGGINN-----LVG--PIPPAIAKLTQLHYLYITHTNVSGA 116 (313)
T ss_dssp CCEEEEEEECCC------CSSCEECCGGGGGCTTCSEEEEEEETT-----EES--CCCGGGGGCTTCSEEEEEEECCEEE
T ss_pred ceEEEEECCCCC------ccCCcccChhHhCCCCCCeeeCCCCCc-----ccc--cCChhHhcCCCCCEEECcCCeeCCc
Confidence 467777777762 222 4566778888888888883133 432 67778888888888888888884 7
Q ss_pred cChhhhcCCCCcEEecCCCCCccc-ccCccccccccccccccccccccCCCCcCcCccccccccc--ccchhhccCCC-C
Q 036584 658 LPSSIVKLQRLQTLDFSGDVGCPV-ELPIEINMMQELRHLIGNFKGTLPIENLTNLQTLKYVQSK--SWNKVNTAKLV-N 733 (919)
Q Consensus 658 LP~~l~~L~~L~~L~L~~~~~~~~-~lp~~i~~L~~L~~L~~~~~~~~~i~~l~~L~~L~~~~~~--~~~~~~l~~l~-~ 733 (919)
+|..+.++++|++|++++| .+. .+|..+..+++|++|. +..+. ...+..+..++ +
T Consensus 117 ~p~~~~~l~~L~~L~Ls~N--~l~~~~p~~~~~l~~L~~L~-------------------L~~N~l~~~~p~~l~~l~~~ 175 (313)
T 1ogq_A 117 IPDFLSQIKTLVTLDFSYN--ALSGTLPPSISSLPNLVGIT-------------------FDGNRISGAIPDSYGSFSKL 175 (313)
T ss_dssp CCGGGGGCTTCCEEECCSS--EEESCCCGGGGGCTTCCEEE-------------------CCSSCCEEECCGGGGCCCTT
T ss_pred CCHHHhCCCCCCEEeCCCC--ccCCcCChHHhcCCCCCeEE-------------------CcCCcccCcCCHHHhhhhhc
Confidence 7888888888888888888 555 5677776666666663 22222 12233344444 5
Q ss_pred CCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCc--CCCCCCCCceeEEEceec-CCCCcchhccCCC
Q 036584 734 LRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASL--QPLSHCQCLVDLRLSGRM-KKLPEDMHVFLPN 810 (919)
Q Consensus 734 L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~ 810 (919)
|+.|+++++.. .... +..+..++ |+.|++++ +.+... ..+..+++|+.|++++|. ...+..+..+ ++
T Consensus 176 L~~L~L~~N~l---~~~~--~~~~~~l~-L~~L~Ls~---N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l-~~ 245 (313)
T 1ogq_A 176 FTSMTISRNRL---TGKI--PPTFANLN-LAFVDLSR---NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS-KN 245 (313)
T ss_dssp CCEEECCSSEE---EEEC--CGGGGGCC-CSEEECCS---SEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCC-TT
T ss_pred CcEEECcCCee---eccC--ChHHhCCc-ccEEECcC---CcccCcCCHHHhcCCCCCEEECCCCceeeecCccccc-CC
Confidence 66666665531 1111 13444554 77777643 222221 225566777777777763 2222234444 78
Q ss_pred cceEEEEccCCCCCCchhhhcCCCCCeEEEeeccccCeeEEEcCCCCcccceeEEecC
Q 036584 811 LECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHYVKKLGCRAEGFPLLEILQLDAD 868 (919)
Q Consensus 811 L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~l~~~ 868 (919)
|++|+|++|.+++..+..++.+++|+.|+|++|.+.+ .++. .+.+++|+.|++..|
T Consensus 246 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~ip~-~~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG-EIPQ-GGNLQRFDVSAYANN 301 (313)
T ss_dssp CCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE-ECCC-STTGGGSCGGGTCSS
T ss_pred CCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccc-cCCC-CccccccChHHhcCC
Confidence 8888888888876777778888888888888665432 2222 256788888877733
No 47
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.75 E-value=3.6e-19 Score=158.20 Aligned_cols=82 Identities=29% Similarity=0.573 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhHhh--hcCCHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 036584 4 AVVSYVVETLGDYLIQEVNFLQGVRDEVESLKKELEWMQSFIKDAEAK--QAGNNLIRRWVSDIRDIAYDAEDVLGKYML 81 (919)
Q Consensus 4 ~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~l~~a~~~--~~~~~~~~~wl~~lr~~~yd~eD~ld~~~~ 81 (919)
|+|+.+++||++++.+|+.++.||++++++|+++|++|++||.+|+.+ +..|++++.|+++|||+|||+|||||+|.+
T Consensus 1 a~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~ 80 (115)
T 3qfl_A 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLV 80 (115)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477889999999999999999999999999999999999999999988 668999999999999999999999999999
Q ss_pred hccc
Q 036584 82 SVHG 85 (919)
Q Consensus 82 ~~~~ 85 (919)
+...
T Consensus 81 ~~~~ 84 (115)
T 3qfl_A 81 QVDG 84 (115)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 8754
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.74 E-value=1.1e-17 Score=182.51 Aligned_cols=280 Identities=13% Similarity=0.034 Sum_probs=183.7
Q ss_pred CeeEEEEecCCCCccccccCCCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhhhh
Q 036584 560 SCRRQAIYSHSPSYFWLHHGNSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKI 639 (919)
Q Consensus 560 ~~r~l~l~~~~~~~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i 639 (919)
..|.+.+.......++ ....+.++.|.+.++. .....+..|..+++|++|+|++ +. +.. ..|..+
T Consensus 32 ~l~~l~~~~~~l~~lp-~~~~~~l~~L~L~~n~------i~~~~~~~~~~l~~L~~L~L~~-n~-----l~~--~~~~~~ 96 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVP-KDLPPDTALLDLQNNK------ITEIKDGDFKNLKNLHTLILIN-NK-----ISK--ISPGAF 96 (330)
T ss_dssp ETTEEECTTSCCCSCC-CSCCTTCCEEECCSSC------CCCBCTTTTTTCTTCCEEECCS-SC-----CCC--BCTTTT
T ss_pred CCeEEEecCCCccccC-ccCCCCCeEEECCCCc------CCEeChhhhccCCCCCEEECCC-Cc-----CCe--eCHHHh
Confidence 4566666644444444 2336789999999882 3345556789999999999999 88 772 338889
Q ss_pred cccccceEEeecCCCccccChhhhcCCCCcEEecCCCCCcccccCcc-ccccccccccccccccccCCCCcCcCcccccc
Q 036584 640 GDLIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVELPIE-INMMQELRHLIGNFKGTLPIENLTNLQTLKYV 718 (919)
Q Consensus 640 ~~L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~~-i~~L~~L~~L~~~~~~~~~i~~l~~L~~L~~~ 718 (919)
+++++|++|+|++|.++.+|..+. ++|++|++++| .+..+|.. +..+++|+.|. +.
T Consensus 97 ~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~-------------------l~ 153 (330)
T 1xku_A 97 APLVKLERLYLSKNQLKELPEKMP--KTLQELRVHEN--EITKVRKSVFNGLNQMIVVE-------------------LG 153 (330)
T ss_dssp TTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSS--CCCBBCHHHHTTCTTCCEEE-------------------CC
T ss_pred cCCCCCCEEECCCCcCCccChhhc--ccccEEECCCC--cccccCHhHhcCCccccEEE-------------------CC
Confidence 999999999999999999998765 79999999999 77777663 56666666663 22
Q ss_pred ccc----ccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCc--CCCCCCCCceeEE
Q 036584 719 QSK----SWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASL--QPLSHCQCLVDLR 792 (919)
Q Consensus 719 ~~~----~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~~~~L~~L~ 792 (919)
.+. ......+..+++|+.|.++++... ... ..+ .++|+.|++++ +.+..+ ..+..+++|++|+
T Consensus 154 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~---~l~---~~~--~~~L~~L~l~~---n~l~~~~~~~~~~l~~L~~L~ 222 (330)
T 1xku_A 154 TNPLKSSGIENGAFQGMKKLSYIRIADTNIT---TIP---QGL--PPSLTELHLDG---NKITKVDAASLKGLNNLAKLG 222 (330)
T ss_dssp SSCCCGGGBCTTGGGGCTTCCEEECCSSCCC---SCC---SSC--CTTCSEEECTT---SCCCEECTGGGTTCTTCCEEE
T ss_pred CCcCCccCcChhhccCCCCcCEEECCCCccc---cCC---ccc--cccCCEEECCC---CcCCccCHHHhcCCCCCCEEE
Confidence 222 122344566677777777766422 111 111 15777777743 333332 2366677888888
Q ss_pred Eceec-CC-CCcchhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccccCeeEE-Ec----CCCCcccceeEE
Q 036584 793 LSGRM-KK-LPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHYVKKLG-CR----AEGFPLLEILQL 865 (919)
Q Consensus 793 L~~~~-~~-~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~-~~----~~~f~~L~~L~l 865 (919)
+++|. .. .+.++..+ ++|++|+|++|.++ ..+..+..+++|+.|+|++|.+...... +. ...++.|+.|++
T Consensus 223 Ls~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l 300 (330)
T 1xku_A 223 LSFNSISAVDNGSLANT-PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 300 (330)
T ss_dssp CCSSCCCEECTTTGGGS-TTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEEC
T ss_pred CCCCcCceeChhhccCC-CCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEe
Confidence 88764 33 33356555 88888888888876 4556678888888888886655332110 00 112467888888
Q ss_pred ecCCcccEEEc---cCCcccccceEEcc
Q 036584 866 DADGLVEWQVE---EGAMPVLRGLKIAA 890 (919)
Q Consensus 866 ~~~~l~~~~~~---~~~~p~L~~L~l~~ 890 (919)
..|.+..+... ...++.|+.+++++
T Consensus 301 ~~N~~~~~~i~~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 301 FSNPVQYWEIQPSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp CSSSSCGGGSCGGGGTTCCCGGGEEC--
T ss_pred ecCcccccccCccccccccceeEEEecc
Confidence 86666654332 23466788888876
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.74 E-value=9e-18 Score=183.40 Aligned_cols=279 Identities=13% Similarity=0.068 Sum_probs=184.6
Q ss_pred CeeEEEEecCCCCccccccCCCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhhhh
Q 036584 560 SCRRQAIYSHSPSYFWLHHGNSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKI 639 (919)
Q Consensus 560 ~~r~l~l~~~~~~~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i 639 (919)
..|.+.+..+....++ ....++++.|.+.++. .....+..|..+++|++|+|++ +. +.. ..|..+
T Consensus 34 ~l~~l~~~~~~l~~ip-~~~~~~l~~L~l~~n~------i~~~~~~~~~~l~~L~~L~L~~-n~-----l~~--~~~~~~ 98 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVP-KEISPDTTLLDLQNND------ISELRKDDFKGLQHLYALVLVN-NK-----ISK--IHEKAF 98 (332)
T ss_dssp ETTEEECCSSCCSSCC-SCCCTTCCEEECCSSC------CCEECTTTTTTCTTCCEEECCS-SC-----CCE--ECGGGS
T ss_pred cCCEEECCCCCccccC-CCCCCCCeEEECCCCc------CCccCHhHhhCCCCCcEEECCC-Cc-----cCc--cCHhHh
Confidence 4677777755555554 2336899999999882 2345566789999999999999 88 772 347889
Q ss_pred cccccceEEeecCCCccccChhhhcCCCCcEEecCCCCCcccccCcc-ccccccccccccccccccCCCCcCcCcccccc
Q 036584 640 GDLIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVELPIE-INMMQELRHLIGNFKGTLPIENLTNLQTLKYV 718 (919)
Q Consensus 640 ~~L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~~-i~~L~~L~~L~~~~~~~~~i~~l~~L~~L~~~ 718 (919)
+++++|++|+|++|.++.+|..+. ++|++|++++| .+..+|.. +..+++|++|.. .
T Consensus 99 ~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n--~i~~~~~~~~~~l~~L~~L~l-------------------~ 155 (332)
T 2ft3_A 99 SPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDN--RIRKVPKGVFSGLRNMNCIEM-------------------G 155 (332)
T ss_dssp TTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSS--CCCCCCSGGGSSCSSCCEEEC-------------------C
T ss_pred hCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCC--ccCccCHhHhCCCccCCEEEC-------------------C
Confidence 999999999999999999998776 89999999999 78888764 566777776632 2
Q ss_pred cccc----cchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCc--CCCCCCCCceeEE
Q 036584 719 QSKS----WNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASL--QPLSHCQCLVDLR 792 (919)
Q Consensus 719 ~~~~----~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~~~~L~~L~ 792 (919)
.+.. .....+..+ +|+.|+++++... ... ..+ .++|+.|++++ +.+..+ ..+..+++|+.|+
T Consensus 156 ~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~---~l~---~~~--~~~L~~L~l~~---n~i~~~~~~~l~~l~~L~~L~ 223 (332)
T 2ft3_A 156 GNPLENSGFEPGAFDGL-KLNYLRISEAKLT---GIP---KDL--PETLNELHLDH---NKIQAIELEDLLRYSKLYRLG 223 (332)
T ss_dssp SCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS---SCC---SSS--CSSCSCCBCCS---SCCCCCCTTSSTTCTTCSCCB
T ss_pred CCccccCCCCcccccCC-ccCEEECcCCCCC---ccC---ccc--cCCCCEEECCC---CcCCccCHHHhcCCCCCCEEE
Confidence 2210 112223333 5666666655422 111 111 15777777743 333333 2366678888888
Q ss_pred Eceec-CCCC-cchhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccccCeeEE-Ec----CCCCcccceeEE
Q 036584 793 LSGRM-KKLP-EDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHYVKKLG-CR----AEGFPLLEILQL 865 (919)
Q Consensus 793 L~~~~-~~~p-~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~-~~----~~~f~~L~~L~l 865 (919)
+++|. ..++ .++..+ ++|+.|+|++|.+. ..+..++.+++|+.|+|++|.+...... +. ...+++|+.|++
T Consensus 224 L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l 301 (332)
T 2ft3_A 224 LGHNQIRMIENGSLSFL-PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISL 301 (332)
T ss_dssp CCSSCCCCCCTTGGGGC-TTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEEC
T ss_pred CCCCcCCcCChhHhhCC-CCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEe
Confidence 88764 3333 356665 88888888888886 5556688888888888886655432110 00 112577888888
Q ss_pred ecCCcccEEEc---cCCcccccceEEcc
Q 036584 866 DADGLVEWQVE---EGAMPVLRGLKIAA 890 (919)
Q Consensus 866 ~~~~l~~~~~~---~~~~p~L~~L~l~~ 890 (919)
..|.+..+... ...+++|+.|++++
T Consensus 302 ~~N~~~~~~~~~~~~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 302 FNNPVPYWEVQPATFRCVTDRLAIQFGN 329 (332)
T ss_dssp CSSSSCGGGSCGGGGTTBCCSTTEEC--
T ss_pred ecCcccccccCcccccccchhhhhhccc
Confidence 86666633222 34577888888887
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.74 E-value=4.3e-18 Score=183.96 Aligned_cols=246 Identities=17% Similarity=0.182 Sum_probs=185.6
Q ss_pred ceEEEEEeccCccccccccccchhhhhhhcccccceEEeecC-CCc-cccChhhhcCCCCcEEecCCCCCccc-ccCccc
Q 036584 611 FLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRN-SNI-GILPSSIVKLQRLQTLDFSGDVGCPV-ELPIEI 687 (919)
Q Consensus 611 ~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~-~~i-~~LP~~l~~L~~L~~L~L~~~~~~~~-~lp~~i 687 (919)
..++.|+|++ +. +.....+|..++++++|++|+|++ |.+ ..+|..++++++|++|++++| .+. .+|..+
T Consensus 50 ~~l~~L~L~~-~~-----l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n--~l~~~~p~~~ 121 (313)
T 1ogq_A 50 YRVNNLDLSG-LN-----LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT--NVSGAIPDFL 121 (313)
T ss_dssp CCEEEEEEEC-CC-----CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE--CCEEECCGGG
T ss_pred ceEEEEECCC-CC-----ccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCC--eeCCcCCHHH
Confidence 5799999999 77 661115889999999999999995 888 689999999999999999999 565 778777
Q ss_pred cccccccccccccccccCCCCcCcCccccccccc--ccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcC-CCc
Q 036584 688 NMMQELRHLIGNFKGTLPIENLTNLQTLKYVQSK--SWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLK-NLR 764 (919)
Q Consensus 688 ~~L~~L~~L~~~~~~~~~i~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~-~L~ 764 (919)
.++++|++|. +..+. ...+..+..+++|+.|+++++... ...+ ..+..++ +|+
T Consensus 122 ~~l~~L~~L~-------------------Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p---~~l~~l~~~L~ 177 (313)
T 1ogq_A 122 SQIKTLVTLD-------------------FSYNALSGTLPPSISSLPNLVGITFDGNRIS--GAIP---DSYGSFSKLFT 177 (313)
T ss_dssp GGCTTCCEEE-------------------CCSSEEESCCCGGGGGCTTCCEEECCSSCCE--EECC---GGGGCCCTTCC
T ss_pred hCCCCCCEEe-------------------CCCCccCCcCChHHhcCCCCCeEECcCCccc--CcCC---HHHhhhhhcCc
Confidence 7666666663 33333 234556788999999999988621 1222 6777887 999
Q ss_pred EEEEeecCCCCccCc--CCCCCCCCceeEEEceec--CCCCcchhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEE
Q 036584 765 FLSVKLLDANSFASL--QPLSHCQCLVDLRLSGRM--KKLPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDL 840 (919)
Q Consensus 765 ~L~l~~~~~~~~~~~--~~l~~~~~L~~L~L~~~~--~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L 840 (919)
.|++.+ +.+.+. ..+..++ |+.|++++|. +..|..+..+ ++|+.|+|++|.+++. ++.++.+++|++|+|
T Consensus 178 ~L~L~~---N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~-~~~~~~l~~L~~L~L 251 (313)
T 1ogq_A 178 SMTISR---NRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSD-KNTQKIHLAKNSLAFD-LGKVGLSKNLNGLDL 251 (313)
T ss_dssp EEECCS---SEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTT-SCCSEEECCSSEECCB-GGGCCCCTTCCEEEC
T ss_pred EEECcC---CeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcC-CCCCEEECCCCceeee-cCcccccCCCCEEEC
Confidence 999954 333221 2244455 9999999975 3567777776 9999999999998754 455889999999999
Q ss_pred eeccccCeeEEEcCCCCcccceeEEecCCcccEEEccCCcccccceEEccccCccC
Q 036584 841 HFRCHYVKKLGCRAEGFPLLEILQLDADGLVEWQVEEGAMPVLRGLKIAAEIPKLK 896 (919)
Q Consensus 841 ~~~~~~~~~~~~~~~~f~~L~~L~l~~~~l~~~~~~~~~~p~L~~L~l~~nC~~l~ 896 (919)
++|.+. ..++.....+++|+.|+++.|.++......+.+++|+.|++.+ ++.+-
T Consensus 252 s~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~-N~~lc 305 (313)
T 1ogq_A 252 RNNRIY-GTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYAN-NKCLC 305 (313)
T ss_dssp CSSCCE-ECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCS-SSEEE
T ss_pred cCCccc-CcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcC-CCCcc
Confidence 966653 2344456778999999999888874333347899999999998 66555
No 51
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.74 E-value=2.2e-17 Score=187.57 Aligned_cols=299 Identities=20% Similarity=0.150 Sum_probs=199.0
Q ss_pred CCCCeeEEEEecCCCCccccccCCCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhh
Q 036584 557 VISSCRRQAIYSHSPSYFWLHHGNSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLS 636 (919)
Q Consensus 557 ~~~~~r~l~l~~~~~~~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp 636 (919)
.+..++.|.+..+....++ ...++++.|.+.++.. . .++.. .+.|++|++++ +. +. .+|
T Consensus 89 ~~~~L~~L~l~~n~l~~lp--~~~~~L~~L~l~~n~l------~-~l~~~---~~~L~~L~L~~-n~-----l~---~lp 147 (454)
T 1jl5_A 89 LPPHLESLVASCNSLTELP--ELPQSLKSLLVDNNNL------K-ALSDL---PPLLEYLGVSN-NQ-----LE---KLP 147 (454)
T ss_dssp CCTTCSEEECCSSCCSSCC--CCCTTCCEEECCSSCC------S-CCCSC---CTTCCEEECCS-SC-----CS---SCC
T ss_pred CcCCCCEEEccCCcCCccc--cccCCCcEEECCCCcc------C-cccCC---CCCCCEEECcC-CC-----CC---CCc
Confidence 4568899999876666543 2368899999988721 1 12211 26899999999 88 77 688
Q ss_pred hhhcccccceEEeecCCCccccChhhhcCCCCcEEecCCCCCcccccCccccccccccccccccccccCC-CCcCcCccc
Q 036584 637 EKIGDLIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVELPIEINMMQELRHLIGNFKGTLPI-ENLTNLQTL 715 (919)
Q Consensus 637 ~~i~~L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~i-~~l~~L~~L 715 (919)
.++++++|++|++++|.++.+|..+ .+|++|++++| .+..+| .+..+++|++|........++ ...++|+.|
T Consensus 148 -~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n--~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L 220 (454)
T 1jl5_A 148 -ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNN--QLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESI 220 (454)
T ss_dssp -CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSS--CCSSCC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred -ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCC--cCCcCc-cccCCCCCCEEECCCCcCCcCCCCcCcccEE
Confidence 6999999999999999998888654 58999999999 788888 588999999984322211111 123578888
Q ss_pred ccccccccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCcCCCCCCCCceeEEEce
Q 036584 716 KYVQSKSWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASLQPLSHCQCLVDLRLSG 795 (919)
Q Consensus 716 ~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~ 795 (919)
++..+.......++.+++|+.|+++++... ... . .+++|+.|++++ +.+..++. .+++|+.|++++
T Consensus 221 ~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~---~l~---~---~~~~L~~L~l~~---N~l~~l~~--~~~~L~~L~ls~ 286 (454)
T 1jl5_A 221 VAGNNILEELPELQNLPFLTTIYADNNLLK---TLP---D---LPPSLEALNVRD---NYLTDLPE--LPQSLTFLDVSE 286 (454)
T ss_dssp ECCSSCCSSCCCCTTCTTCCEEECCSSCCS---SCC---S---CCTTCCEEECCS---SCCSCCCC--CCTTCCEEECCS
T ss_pred ECcCCcCCcccccCCCCCCCEEECCCCcCC---ccc---c---cccccCEEECCC---CcccccCc--ccCcCCEEECcC
Confidence 888777334446888999999999987532 111 1 236889999854 33433332 247899999988
Q ss_pred ec-CCCCcchhccCCCcceEEEEccCCCCCCchhhhcC-CCCCeEEEeeccccCeeEEEcCCCCcccceeEEecCCcccE
Q 036584 796 RM-KKLPEDMHVFLPNLECLSLSVPYPKEDPMPALEML-PNLIILDLHFRCHYVKKLGCRAEGFPLLEILQLDADGLVEW 873 (919)
Q Consensus 796 ~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l-p~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~l~~~~l~~~ 873 (919)
|. ..+| .++++|++|++++|.+.+ +..+ ++|+.|++++|.... ++ ..+++|+.|+++.|.++.+
T Consensus 287 N~l~~l~----~~~~~L~~L~l~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~--lp---~~~~~L~~L~L~~N~l~~l 352 (454)
T 1jl5_A 287 NIFSGLS----ELPPNLYYLNASSNEIRS-----LCDLPPSLEELNVSNNKLIE--LP---ALPPRLERLIASFNHLAEV 352 (454)
T ss_dssp SCCSEES----CCCTTCCEEECCSSCCSE-----ECCCCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSCC
T ss_pred CccCccc----CcCCcCCEEECcCCcCCc-----ccCCcCcCCEEECCCCcccc--cc---ccCCcCCEEECCCCccccc
Confidence 74 3333 223788888888888753 2234 488888888665543 22 2368888888887778776
Q ss_pred EEccCCcccccceEEccccCccC----CcccccCC-------------CCCCeeEecccC
Q 036584 874 QVEEGAMPVLRGLKIAAEIPKLK----IPERLRSV-------------PPPAEWECEDSR 916 (919)
Q Consensus 874 ~~~~~~~p~L~~L~l~~nC~~l~----lp~~l~~L-------------~~L~~l~~~~~~ 916 (919)
+. .+++|+.|++++ | .+. +|..+.+| ++|+.+++++++
T Consensus 353 p~---~l~~L~~L~L~~-N-~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 353 PE---LPQNLKQLHVEY-N-PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp CC---CCTTCCEEECCS-S-CCSSCCCCCTTCCEEECCC---------------------
T ss_pred cc---hhhhccEEECCC-C-CCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 54 578888888887 3 444 56677666 778888887754
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.72 E-value=4.3e-17 Score=190.93 Aligned_cols=249 Identities=19% Similarity=0.127 Sum_probs=140.0
Q ss_pred EEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccChhhhcCCCCcEEecCCCCCcccccCcccccccc
Q 036584 613 LRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVELPIEINMMQE 692 (919)
Q Consensus 613 LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~ 692 (919)
+++|++++ +. +. .+|..+. ++|++|+|++|.|+.+|. .+++|++|+|++| .+..+|. .+++
T Consensus 42 l~~L~ls~-n~-----L~---~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N--~l~~lp~---~l~~ 102 (622)
T 3g06_A 42 NAVLNVGE-SG-----LT---TLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN--QLTSLPV---LPPG 102 (622)
T ss_dssp CCEEECCS-SC-----CS---CCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC--CCSCCCC---CCTT
T ss_pred CcEEEecC-CC-----cC---ccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC--cCCcCCC---CCCC
Confidence 45555555 44 44 4444443 455555555555555544 3445555555555 4444444 3344
Q ss_pred cccccc---ccccccCCCCcCcCcccccccccccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEe
Q 036584 693 LRHLIG---NFKGTLPIENLTNLQTLKYVQSKSWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVK 769 (919)
Q Consensus 693 L~~L~~---~~~~~~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 769 (919)
|++|.. ...... ..+++|+.|.+..+....+. ..+++|+.|++++|... ... . .+++|+.|++.
T Consensus 103 L~~L~Ls~N~l~~l~--~~l~~L~~L~L~~N~l~~lp--~~l~~L~~L~Ls~N~l~---~l~---~---~~~~L~~L~L~ 169 (622)
T 3g06_A 103 LLELSIFSNPLTHLP--ALPSGLCKLWIFGNQLTSLP--VLPPGLQELSVSDNQLA---SLP---A---LPSELCKLWAY 169 (622)
T ss_dssp CCEEEECSCCCCCCC--CCCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCS---CCC---C---CCTTCCEEECC
T ss_pred CCEEECcCCcCCCCC--CCCCCcCEEECCCCCCCcCC--CCCCCCCEEECcCCcCC---CcC---C---ccCCCCEEECC
Confidence 444421 111111 13445555555544411111 12467777777776422 111 1 23567777774
Q ss_pred ecCCCCccCcCCCCCCCCceeEEEceec-CCCCcchhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccccCe
Q 036584 770 LLDANSFASLQPLSHCQCLVDLRLSGRM-KKLPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHYVK 848 (919)
Q Consensus 770 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~ 848 (919)
+ +.+..++ ..+++|+.|++++|. ..+|.. +++|+.|++++|.++..+ . .+++|+.|+|++|.+..
T Consensus 170 ~---N~l~~l~--~~~~~L~~L~Ls~N~l~~l~~~----~~~L~~L~L~~N~l~~l~-~---~~~~L~~L~Ls~N~L~~- 235 (622)
T 3g06_A 170 N---NQLTSLP--MLPSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLTSLP-A---LPSGLKELIVSGNRLTS- 235 (622)
T ss_dssp S---SCCSCCC--CCCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCC-C---CCTTCCEEECCSSCCSC-
T ss_pred C---CCCCCCc--ccCCCCcEEECCCCCCCCCCCc----cchhhEEECcCCcccccC-C---CCCCCCEEEccCCccCc-
Confidence 3 3333333 446778888887764 445532 377888888888776322 1 35778888887665433
Q ss_pred eEEEcCCCCcccceeEEecCCcccEEEccCCcccccceEEccccCccC-CcccccCCCCCCeeEecccC
Q 036584 849 KLGCRAEGFPLLEILQLDADGLVEWQVEEGAMPVLRGLKIAAEIPKLK-IPERLRSVPPPAEWECEDSR 916 (919)
Q Consensus 849 ~~~~~~~~f~~L~~L~l~~~~l~~~~~~~~~~p~L~~L~l~~nC~~l~-lp~~l~~L~~L~~l~~~~~~ 916 (919)
++ ..+++|+.|+++.|.++.++. .+++|+.|++++ +.++ +|..+.++++|+.+++++++
T Consensus 236 -lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~--N~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 236 -LP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYR--NQLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp -CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCS--SCCCSCCGGGGGSCTTCEEECCSCC
T ss_pred -CC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCC--CCCCcCCHHHhhccccCEEEecCCC
Confidence 22 456788888888777776654 577888888876 4677 88778888888888887754
No 53
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.70 E-value=3.6e-17 Score=185.83 Aligned_cols=125 Identities=17% Similarity=0.151 Sum_probs=51.9
Q ss_pred cchhhhccCceEEEEEeccCccccccccccchhhhhhhcccccc-------------eEEeecCCCccccChhhhcCCCC
Q 036584 602 HLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHL-------------KYLGLRNSNIGILPSSIVKLQRL 668 (919)
Q Consensus 602 ~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~L-------------r~L~L~~~~i~~LP~~l~~L~~L 668 (919)
.+|..+.++++|++|++++ +. +. +.+|..++++.+| ++|++++|.++.+|.. .++|
T Consensus 25 ~iP~~i~~L~~L~~L~l~~-n~-----~~--~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~---~~~L 93 (454)
T 1jl5_A 25 EMPVEAENVKSKTEYYNAW-SE-----WE--RNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL---PPHL 93 (454)
T ss_dssp ---------CCHHHHHHHH-HH-----HH--HTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC---CTTC
T ss_pred hCChhHhcccchhhhhccC-Cc-----cc--ccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC---cCCC
Confidence 3444455555555555555 44 33 2455555555443 5555555555555541 2455
Q ss_pred cEEecCCCCCcccccCccccccccccccccccccccCCCCc-CcCcccccccccccchhhccCCCCCCeEEeeec
Q 036584 669 QTLDFSGDVGCPVELPIEINMMQELRHLIGNFKGTLPIENL-TNLQTLKYVQSKSWNKVNTAKLVNLRDLHIEED 742 (919)
Q Consensus 669 ~~L~L~~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~i~~l-~~L~~L~~~~~~~~~~~~l~~l~~L~~L~i~~~ 742 (919)
++|++++| .+..+|..+ ++|++|.........+..+ ++|++|++..+.......++.+++|+.|+++++
T Consensus 94 ~~L~l~~n--~l~~lp~~~---~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 94 ESLVASCN--SLTELPELP---QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNN 163 (454)
T ss_dssp SEEECCSS--CCSSCCCCC---TTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred CEEEccCC--cCCcccccc---CCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCcccCCCCCCCEEECCCC
Confidence 55555555 444455422 3444442211111112222 345555544444212223445555555555544
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.70 E-value=7e-17 Score=177.94 Aligned_cols=244 Identities=17% Similarity=0.128 Sum_probs=171.1
Q ss_pred CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccC
Q 036584 580 NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILP 659 (919)
Q Consensus 580 ~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP 659 (919)
.++++.|.+.++. .....+..+.++++|++|+|++ +. +.. ..|..++++++|++|+|++|.++.+|
T Consensus 51 ~~~L~~L~l~~n~------i~~~~~~~~~~l~~L~~L~L~~-n~-----l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~ 116 (353)
T 2z80_A 51 TEAVKSLDLSNNR------ITYISNSDLQRCVNLQALVLTS-NG-----INT--IEEDSFSSLGSLEHLDLSYNYLSNLS 116 (353)
T ss_dssp CTTCCEEECTTSC------CCEECTTTTTTCTTCCEEECTT-SC-----CCE--ECTTTTTTCTTCCEEECCSSCCSSCC
T ss_pred cccCcEEECCCCc------CcccCHHHhccCCCCCEEECCC-Cc-----cCc--cCHhhcCCCCCCCEEECCCCcCCcCC
Confidence 5789999998882 2334455788999999999999 77 762 33567999999999999999999998
Q ss_pred hh-hhcCCCCcEEecCCCCCcccccCc--cccccccccccccc----cc--cccCCCCcCcCccccccccc--ccchhhc
Q 036584 660 SS-IVKLQRLQTLDFSGDVGCPVELPI--EINMMQELRHLIGN----FK--GTLPIENLTNLQTLKYVQSK--SWNKVNT 728 (919)
Q Consensus 660 ~~-l~~L~~L~~L~L~~~~~~~~~lp~--~i~~L~~L~~L~~~----~~--~~~~i~~l~~L~~L~~~~~~--~~~~~~l 728 (919)
.. +..+++|++|++++| .+..+|. .+..+++|++|... .. .+..++.+++|++|++..+. ......+
T Consensus 117 ~~~~~~l~~L~~L~L~~n--~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 194 (353)
T 2z80_A 117 SSWFKPLSSLTFLNLLGN--PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL 194 (353)
T ss_dssp HHHHTTCTTCSEEECTTC--CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred HhHhCCCccCCEEECCCC--CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH
Confidence 86 899999999999999 7888887 67888999988421 11 12347788888888887776 3335667
Q ss_pred cCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCcc--CcCCCCCCCCceeEEEceec------CCC
Q 036584 729 AKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFA--SLQPLSHCQCLVDLRLSGRM------KKL 800 (919)
Q Consensus 729 ~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~l~~~~~L~~L~L~~~~------~~~ 800 (919)
..+++|+.|+++++.. .... . ..+..+++|+.|+++++....+. .+......+.++.++++++. ..+
T Consensus 195 ~~l~~L~~L~l~~n~l---~~~~-~-~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l 269 (353)
T 2z80_A 195 KSIQNVSHLILHMKQH---ILLL-E-IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV 269 (353)
T ss_dssp TTCSEEEEEEEECSCS---TTHH-H-HHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred hccccCCeecCCCCcc---ccch-h-hhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence 7888888888888752 1211 1 34456788888888654322211 11122335566777776542 235
Q ss_pred CcchhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccc
Q 036584 801 PEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCH 845 (919)
Q Consensus 801 p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~ 845 (919)
|.++..+ ++|+.|+|++|.++..+...++.+++|+.|+|++|.+
T Consensus 270 ~~~l~~l-~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 270 MKLLNQI-SGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp HHHHHTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred HHHHhcc-cCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 6666666 8888888888887744433457788888888886654
No 55
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.70 E-value=1.3e-16 Score=190.80 Aligned_cols=336 Identities=16% Similarity=0.134 Sum_probs=207.0
Q ss_pred CCCCeeEEEEecCCCCccccccC--CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchh
Q 036584 557 VISSCRRQAIYSHSPSYFWLHHG--NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNR 634 (919)
Q Consensus 557 ~~~~~r~l~l~~~~~~~~~~~~~--~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~ 634 (919)
...++|+|.+..+....++.... +++|++|.+.++. .....+..|.++++|++|+|++ +. +. .
T Consensus 74 ~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~------l~~l~~~~f~~L~~L~~L~Ls~-N~-----l~---~ 138 (635)
T 4g8a_A 74 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP------IQSLALGAFSGLSSLQKLVAVE-TN-----LA---S 138 (635)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC------CCEECGGGGTTCTTCCEEECTT-SC-----CC---C
T ss_pred CCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc------CCCCCHHHhcCCCCCCEEECCC-Cc-----CC---C
Confidence 45689999999777776654432 8999999999982 3345567789999999999999 88 77 6
Q ss_pred hhh-hhcccccceEEeecCCCcc--ccChhhhcCCCCcEEecCCCCCcccccCc-cccccccccccc-------c-----
Q 036584 635 LSE-KIGDLIHLKYLGLRNSNIG--ILPSSIVKLQRLQTLDFSGDVGCPVELPI-EINMMQELRHLI-------G----- 698 (919)
Q Consensus 635 lp~-~i~~L~~Lr~L~L~~~~i~--~LP~~l~~L~~L~~L~L~~~~~~~~~lp~-~i~~L~~L~~L~-------~----- 698 (919)
+|. .+++|++|++|+|++|.++ .+|..++.+++|++|++++| .+..++. .+..+.+++.+. +
T Consensus 139 l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N--~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i 216 (635)
T 4g8a_A 139 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN--KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 216 (635)
T ss_dssp STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS--CCCEECGGGGHHHHTCTTCCCEEECTTCCCCEE
T ss_pred CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc--cccccccccccchhhhhhhhhhhhcccCccccc
Confidence 664 5899999999999999995 46788999999999999999 5655543 333333222110 0
Q ss_pred -----------------cc-------------------------------------------------------------
Q 036584 699 -----------------NF------------------------------------------------------------- 700 (919)
Q Consensus 699 -----------------~~------------------------------------------------------------- 700 (919)
..
T Consensus 217 ~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 296 (635)
T 4g8a_A 217 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 296 (635)
T ss_dssp CTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEE
T ss_pred CcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhccccc
Confidence 00
Q ss_pred ----------------------ccccCCCCcCcCccccccccc---------------------ccchhhccCCCCCCeE
Q 036584 701 ----------------------KGTLPIENLTNLQTLKYVQSK---------------------SWNKVNTAKLVNLRDL 737 (919)
Q Consensus 701 ----------------------~~~~~i~~l~~L~~L~~~~~~---------------------~~~~~~l~~l~~L~~L 737 (919)
.....+....+|+.|.+..+. .........+++|+.|
T Consensus 297 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L 376 (635)
T 4g8a_A 297 GIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL 376 (635)
T ss_dssp ECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEE
T ss_pred chhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccc
Confidence 000001112233333333222 1112233457888888
Q ss_pred EeeecCccccccccchhhHHhhcCCCcEEEEeecCCC-----------------------CccCcCCCCCCCCceeEEEc
Q 036584 738 HIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDAN-----------------------SFASLQPLSHCQCLVDLRLS 794 (919)
Q Consensus 738 ~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----------------------~~~~~~~l~~~~~L~~L~L~ 794 (919)
.++.+......... .....+.+|+.|.+...... .......+..+++++.++++
T Consensus 377 ~ls~n~l~~~~~~~---~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls 453 (635)
T 4g8a_A 377 DLSRNGLSFKGCCS---QSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 453 (635)
T ss_dssp ECCSSCCBEEEECC---HHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECT
T ss_pred hhhccccccccccc---cchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccc
Confidence 88877532111111 34445556666655322110 00011123445566666666
Q ss_pred eec-C-CCCcchhccCCCcceEEEEccCCCC-CCchhhhcCCCCCeEEEeeccccCeeEEEcCCCCcccceeEEecCCcc
Q 036584 795 GRM-K-KLPEDMHVFLPNLECLSLSVPYPKE-DPMPALEMLPNLIILDLHFRCHYVKKLGCRAEGFPLLEILQLDADGLV 871 (919)
Q Consensus 795 ~~~-~-~~p~~~~~l~~~L~~L~L~~~~l~~-~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~l~~~~l~ 871 (919)
.+. . ..|..+..+ ++|+.|+|++|.+.. ..+..++.+++|+.|+|++|.... ..+....++++|++|+|+.|+++
T Consensus 454 ~n~l~~~~~~~~~~~-~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~-l~~~~f~~l~~L~~L~Ls~N~l~ 531 (635)
T 4g8a_A 454 HTHTRVAFNGIFNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNFF 531 (635)
T ss_dssp TSCCEECCTTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCC
T ss_pred ccccccccccccccc-hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCC-cChHHHcCCCCCCEEECCCCcCC
Confidence 553 2 223333333 778888887775432 344567778888888888554322 12233566788888888877777
Q ss_pred cEEEc-cCCcccccceEEccccCccC--CcccccCC-CCCCeeEecccC
Q 036584 872 EWQVE-EGAMPVLRGLKIAAEIPKLK--IPERLRSV-PPPAEWECEDSR 916 (919)
Q Consensus 872 ~~~~~-~~~~p~L~~L~l~~nC~~l~--lp~~l~~L-~~L~~l~~~~~~ 916 (919)
.++.. ...+++|+.|++++ ++++ .|..+.++ ++|+.+++++++
T Consensus 532 ~l~~~~~~~l~~L~~L~Ls~--N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 532 SLDTFPYKCLNSLQVLDYSL--NHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp BCCCGGGTTCTTCCEEECTT--SCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCChhHHhCCCCCCEEECCC--CcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 76433 35678888888887 5666 56677777 578888887743
No 56
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.69 E-value=2.9e-18 Score=203.44 Aligned_cols=315 Identities=14% Similarity=0.040 Sum_probs=166.2
Q ss_pred ccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccch--hhhhhhcccccceEEeecCCCcc----
Q 036584 583 ARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSN--RLSEKIGDLIHLKYLGLRNSNIG---- 656 (919)
Q Consensus 583 lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~--~lp~~i~~L~~Lr~L~L~~~~i~---- 656 (919)
|++|.+.++. ......++....++++|++|+|++ |. +...+ .++..+..+++|++|+|++|.++
T Consensus 140 L~~L~L~~~~----~~~~~~l~~~~~~~~~L~~L~L~~-~~-----~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~ 209 (592)
T 3ogk_B 140 LETLKLDKCS----GFTTDGLLSIVTHCRKIKTLLMEE-SS-----FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISP 209 (592)
T ss_dssp CCEEEEESCE----EEEHHHHHHHHHHCTTCSEEECTT-CE-----EECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCH
T ss_pred CcEEECcCCC----CcCHHHHHHHHhhCCCCCEEECcc-cc-----ccCcchhHHHHHHhcCCCccEEEeeccCCCccCH
Confidence 6666666652 111122334445666666666666 54 32100 13333445566666666666553
Q ss_pred -ccChhhhcCCCCcEEecCCCCCcccccCccccccccccccccc-c------------------------------cccc
Q 036584 657 -ILPSSIVKLQRLQTLDFSGDVGCPVELPIEINMMQELRHLIGN-F------------------------------KGTL 704 (919)
Q Consensus 657 -~LP~~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~L~~L~~~-~------------------------------~~~~ 704 (919)
.++..+.++++|++|++++| .+..+|..+..+++|++|... . ..+.
T Consensus 210 ~~l~~~~~~~~~L~~L~L~~~--~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~ 287 (592)
T 3ogk_B 210 KDLETIARNCRSLVSVKVGDF--EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI 287 (592)
T ss_dssp HHHHHHHHHCTTCCEEECSSC--BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG
T ss_pred HHHHHHHhhCCCCcEEeccCc--cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHH
Confidence 33444455666666666666 555555555555555555221 0 1111
Q ss_pred CCCCcCcCccccccccccc---chhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeec--------CC
Q 036584 705 PIENLTNLQTLKYVQSKSW---NKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLL--------DA 773 (919)
Q Consensus 705 ~i~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~--------~~ 773 (919)
-+..+++|+.|++..+... ....+..+++|+.|.+.++- ..... ......+++|+.|.+... ..
T Consensus 288 ~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~---~~~~l--~~~~~~~~~L~~L~L~~g~~~~~~~~~~ 362 (592)
T 3ogk_B 288 LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVI---GDRGL--EVLAQYCKQLKRLRIERGADEQGMEDEE 362 (592)
T ss_dssp GGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGG---HHHHH--HHHHHHCTTCCEEEEECCCCSSTTSSTT
T ss_pred HHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCcc---CHHHH--HHHHHhCCCCCEEEeecCcccccccccc
Confidence 1344556666665555411 11224566666666666321 11111 133355677777777620 01
Q ss_pred CCcc--CcCC-CCCCCCceeEEEceec--CCCCcchhccCCCcceEEEE----ccCCCCCC-----chhhhcCCCCCeEE
Q 036584 774 NSFA--SLQP-LSHCQCLVDLRLSGRM--KKLPEDMHVFLPNLECLSLS----VPYPKEDP-----MPALEMLPNLIILD 839 (919)
Q Consensus 774 ~~~~--~~~~-l~~~~~L~~L~L~~~~--~~~p~~~~~l~~~L~~L~L~----~~~l~~~~-----~~~l~~lp~L~~L~ 839 (919)
+.+. ++.. ...+++|++|+++.+. ...+..+...+++|++|+|+ .+.+++.+ ...+..+++|+.|+
T Consensus 363 ~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~ 442 (592)
T 3ogk_B 363 GLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFA 442 (592)
T ss_dssp CCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred CccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEE
Confidence 1111 1111 2336777888775432 12233344324778888886 34554321 12255678888888
Q ss_pred Eeecc--ccCeeEEEcCCCCcccceeEEecCCcccE--EEccCCcccccceEEccccCccC---CcccccCCCCCCeeEe
Q 036584 840 LHFRC--HYVKKLGCRAEGFPLLEILQLDADGLVEW--QVEEGAMPVLRGLKIAAEIPKLK---IPERLRSVPPPAEWEC 912 (919)
Q Consensus 840 L~~~~--~~~~~~~~~~~~f~~L~~L~l~~~~l~~~--~~~~~~~p~L~~L~l~~nC~~l~---lp~~l~~L~~L~~l~~ 912 (919)
|++|. .....+......+++|+.|+++++.++.. +.....+++|++|+|++ |+ ++ ++..+..+++|+.+++
T Consensus 443 L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~-n~-l~~~~~~~~~~~l~~L~~L~l 520 (592)
T 3ogk_B 443 FYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRG-CC-FSERAIAAAVTKLPSLRYLWV 520 (592)
T ss_dssp EECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEES-CC-CBHHHHHHHHHHCSSCCEEEE
T ss_pred EecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccC-CC-CcHHHHHHHHHhcCccCeeEC
Confidence 86432 11111111123477888888886666642 22234678899999988 76 56 5666677888999988
Q ss_pred cccC
Q 036584 913 EDSR 916 (919)
Q Consensus 913 ~~~~ 916 (919)
++|+
T Consensus 521 s~n~ 524 (592)
T 3ogk_B 521 QGYR 524 (592)
T ss_dssp ESCB
T ss_pred cCCc
Confidence 8875
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.69 E-value=9.1e-17 Score=177.03 Aligned_cols=245 Identities=16% Similarity=0.121 Sum_probs=151.1
Q ss_pred ceEEEEEeccCccccccccccchhhhh-hhcccccceEEeecCCCccccC-hhhhcCCCCcEEecCCCCCcccccCcc-c
Q 036584 611 FLLRVFDVEADLDRESTLMHWSNRLSE-KIGDLIHLKYLGLRNSNIGILP-SSIVKLQRLQTLDFSGDVGCPVELPIE-I 687 (919)
Q Consensus 611 ~~LrvL~L~~~~~~~~~~i~~~~~lp~-~i~~L~~Lr~L~L~~~~i~~LP-~~l~~L~~L~~L~L~~~~~~~~~lp~~-i 687 (919)
+.|++|++++ +. +. .+|. .+.++++|++|+|++|.++.++ ..+.++++|++|++++| .+..+|.. +
T Consensus 52 ~~L~~L~l~~-n~-----i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~ 120 (353)
T 2z80_A 52 EAVKSLDLSN-NR-----IT---YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN--YLSNLSSSWF 120 (353)
T ss_dssp TTCCEEECTT-SC-----CC---EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS--CCSSCCHHHH
T ss_pred ccCcEEECCC-Cc-----Cc---ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC--cCCcCCHhHh
Confidence 4678888887 66 66 4544 6777888888888888876664 45778888888888877 66666654 4
Q ss_pred cccccccccccccccccCCCCcCcCcccccccccccc--h-hhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCc
Q 036584 688 NMMQELRHLIGNFKGTLPIENLTNLQTLKYVQSKSWN--K-VNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLR 764 (919)
Q Consensus 688 ~~L~~L~~L~~~~~~~~~i~~l~~L~~L~~~~~~~~~--~-~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~ 764 (919)
.++ ++|++|++..+.... . ..+..+++|+.|+++++.. ..... +..+..+++|+
T Consensus 121 ~~l-------------------~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~--~~~~~--~~~~~~l~~L~ 177 (353)
T 2z80_A 121 KPL-------------------SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT--FTKIQ--RKDFAGLTFLE 177 (353)
T ss_dssp TTC-------------------TTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSS--CCEEC--TTTTTTCCEEE
T ss_pred CCC-------------------ccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcc--ccccC--HHHccCCCCCC
Confidence 444 444444444444111 1 3467788888888887631 11111 14567778888
Q ss_pred EEEEeecCCCCccCcCCCCCCCCceeEEEceec-CCCCcchhccCCCcceEEEEccCCCCCCchhh---hcCCCCCeEEE
Q 036584 765 FLSVKLLDANSFASLQPLSHCQCLVDLRLSGRM-KKLPEDMHVFLPNLECLSLSVPYPKEDPMPAL---EMLPNLIILDL 840 (919)
Q Consensus 765 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l---~~lp~L~~L~L 840 (919)
.|++.++....+ ....+..+++|++|++++|. ..+|..+...+++|+.|+|++|.+++..+..+ ...+.++.++|
T Consensus 178 ~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L 256 (353)
T 2z80_A 178 ELEIDASDLQSY-EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256 (353)
T ss_dssp EEEEEETTCCEE-CTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEE
T ss_pred EEECCCCCcCcc-CHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccc
Confidence 888865433221 12336667788888888764 44554444334788888888887765443333 34566777777
Q ss_pred eeccccCee---EEEcCCCCcccceeEEecCCcccEEEcc-CCcccccceEEcc
Q 036584 841 HFRCHYVKK---LGCRAEGFPLLEILQLDADGLVEWQVEE-GAMPVLRGLKIAA 890 (919)
Q Consensus 841 ~~~~~~~~~---~~~~~~~f~~L~~L~l~~~~l~~~~~~~-~~~p~L~~L~l~~ 890 (919)
.++...... ++.....+++|+.|+++.|+++.++... ..+++|++|++++
T Consensus 257 ~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 310 (353)
T 2z80_A 257 RNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310 (353)
T ss_dssp ESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeC
Confidence 744432211 1112345677777777766777665443 5677777777777
No 58
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.69 E-value=2.1e-15 Score=165.99 Aligned_cols=299 Identities=13% Similarity=0.073 Sum_probs=183.8
Q ss_pred CCCCCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCC------CHHHH
Q 036584 200 AVEENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDY------KIKDL 273 (919)
Q Consensus 200 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~------~~~~~ 273 (919)
..+..|+||+++++.+.+++..+ +++.|+|++|+|||||++++++.. . ++|+++.... +...+
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~ 77 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREEL 77 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHH
T ss_pred CChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHH
Confidence 34567999999999999998763 689999999999999999999842 1 7788775432 55666
Q ss_pred HHHHHHHhccc--------------ccccccccCCHHHHHHHHHHHhcc-CceEEEEecccchhH--------HHHHHhh
Q 036584 274 LLRIIKSFNIM--------------TALEDLETKTEEDLARSLRKSLEA-YSYLMVIDDIWHKED--------WVSLKSA 330 (919)
Q Consensus 274 ~~~il~~l~~~--------------~~~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~~~--------~~~l~~~ 330 (919)
+..+...+... ....+....+..++.+.+.+..+. ++.+|||||++.... +......
T Consensus 78 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~ 157 (350)
T 2qen_A 78 IKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAY 157 (350)
T ss_dssp HHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHH
Confidence 66666655320 000011124566677777766643 499999999976432 2222222
Q ss_pred CCCCCCCcEEEEEecchhh-hhh---------cC-CCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHc
Q 036584 331 FPENKIGSRVIITTRIKDV-AER---------SD-DRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKC 399 (919)
Q Consensus 331 l~~~~~gs~iivTtr~~~v-~~~---------~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~ 399 (919)
+.....+.++|+|++...+ ... .. .....+.+.+|+.+|+.+++.......... ...+.+.+|++.|
T Consensus 158 ~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~--~~~~~~~~i~~~t 235 (350)
T 2qen_A 158 AYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD--VPENEIEEAVELL 235 (350)
T ss_dssp HHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHH
T ss_pred HHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHh
Confidence 2112247889999887643 211 11 111479999999999999998754322211 1134678899999
Q ss_pred CCcchHHHHHHHHhcCC-ChHHHH-HHHHHHHHhhcCCchhhHHHHHhccccchHHHHHHHhHhcCCCCCceecHHHHHH
Q 036584 400 DGLPLAIVVLGGLLSTK-RPQEWR-EVRNHIWRHLRNDSIQVSYLLDLSFNDLSHQLKLCFLYLSLFPEDFVINVEKLIR 477 (919)
Q Consensus 400 ~G~PLal~~~~~~l~~~-~~~~w~-~~~~~~~~~l~~~~~~i~~~l~~sy~~L~~~~k~c~~~~s~fp~~~~i~~~~li~ 477 (919)
+|+|+++..++..+... +...+. .+.+.....+. ..+. .+.+ . ++..+..+..+|. + .++...+..
T Consensus 236 gG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~---~l~~-~-~~~~~~~l~~la~---g-~~~~~~l~~ 303 (350)
T 2qen_A 236 DGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIM---GELE---ELRR-R-SPRYVDILRAIAL---G-YNRWSLIRD 303 (350)
T ss_dssp TTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH---HHHH---HHHH-H-CHHHHHHHHHHHT---T-CCSHHHHHH
T ss_pred CCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHH---HHHH---HHHh-C-ChhHHHHHHHHHh---C-CCCHHHHHH
Confidence 99999999988765332 222221 11111111110 1111 1111 2 6888999999987 2 234455554
Q ss_pred HHHHcCCcccCCCCCHHHHHHHHHHHHHHcccccccccCCCceeEEEecHHHHHHHH
Q 036584 478 LLVAEGFIRQDEDRTMEEVAKDILDELINRSLIQVEKRCWGRISTCRVHDLLRDLAI 534 (919)
Q Consensus 478 ~w~aeg~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~H~lv~~~~~ 534 (919)
...+.. ++. .......+++.|.+.++|...+ + .....|++++++.+
T Consensus 304 ~~~~~~-----~~~-~~~~~~~~l~~L~~~gli~~~~---~--~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 304 YLAVKG-----TKI-PEPRLYALLENLKKMNWIVEED---N--TYKIADPVVATVLR 349 (350)
T ss_dssp HHHHTT-----CCC-CHHHHHHHHHHHHHTTSEEEET---T--EEEESSHHHHHHHT
T ss_pred HHHHHh-----CCC-CHHHHHHHHHHHHhCCCEEecC---C--EEEEecHHHHHHHc
Confidence 432211 011 2345778999999999997653 1 22345889998764
No 59
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.69 E-value=5.2e-19 Score=202.87 Aligned_cols=342 Identities=15% Similarity=0.030 Sum_probs=182.8
Q ss_pred CCeeEEEEecCCCCcccccc---CCCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhh
Q 036584 559 SSCRRQAIYSHSPSYFWLHH---GNSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRL 635 (919)
Q Consensus 559 ~~~r~l~l~~~~~~~~~~~~---~~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~l 635 (919)
..+++|.+..+......... .++++++|.+.++.... .....++..+..+++|++|+|++ +. +.. ..
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~--~~~~~l~~~l~~~~~L~~L~Ls~-n~-----l~~--~~ 72 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTE--ARCKDISSALRVNPALAELNLRS-NE-----LGD--VG 72 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCH--HHHHHHHHHHHTCTTCCEEECTT-CC-----CHH--HH
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCH--HHHHHHHHHHHhCCCcCEEeCCC-Cc-----CCh--HH
Confidence 45677777755544333221 27788888888873110 01124456677778888888888 66 542 22
Q ss_pred hhhhc-ccc----cceEEeecCCCcc-----ccChhhhcCCCCcEEecCCCCCccccc-Ccccc-----ccccccccccc
Q 036584 636 SEKIG-DLI----HLKYLGLRNSNIG-----ILPSSIVKLQRLQTLDFSGDVGCPVEL-PIEIN-----MMQELRHLIGN 699 (919)
Q Consensus 636 p~~i~-~L~----~Lr~L~L~~~~i~-----~LP~~l~~L~~L~~L~L~~~~~~~~~l-p~~i~-----~L~~L~~L~~~ 699 (919)
+..+. .+. +|++|+|++|.|+ .+|..+..+++|++|++++| .+... +..+. .+++|++|...
T Consensus 73 ~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n--~i~~~~~~~l~~~l~~~~~~L~~L~L~ 150 (461)
T 1z7x_W 73 VHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN--LLGDAGLQLLCEGLLDPQCRLEKLQLE 150 (461)
T ss_dssp HHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS--BCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC--cCchHHHHHHHHHHhcCCCcceEEECC
Confidence 33333 244 5888888888875 46777788888888888887 44322 22221 23457776321
Q ss_pred c---cc------ccCCCCcCcCcccccccccc--cchhhcc-----CCCCCCeEEeeecCccccccccchhhHHhhcCCC
Q 036584 700 F---KG------TLPIENLTNLQTLKYVQSKS--WNKVNTA-----KLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNL 763 (919)
Q Consensus 700 ~---~~------~~~i~~l~~L~~L~~~~~~~--~~~~~l~-----~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L 763 (919)
. .. +..+..+++|++|++..+.. .....+. .+++|+.|+++++......... .+..+..+++|
T Consensus 151 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~-l~~~l~~~~~L 229 (461)
T 1z7x_W 151 YCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD-LCGIVASKASL 229 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHH-HHHHHHHCTTC
T ss_pred CCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHH-HHHHHHhCCCc
Confidence 1 11 11245567777777776651 1122222 2457777777776532111001 12456667777
Q ss_pred cEEEEeecCCCCcc--Cc-CC-CCCCCCceeEEEceec-CC-----CCcchhccCCCcceEEEEccCCCCCCchhhhc--
Q 036584 764 RFLSVKLLDANSFA--SL-QP-LSHCQCLVDLRLSGRM-KK-----LPEDMHVFLPNLECLSLSVPYPKEDPMPALEM-- 831 (919)
Q Consensus 764 ~~L~l~~~~~~~~~--~~-~~-l~~~~~L~~L~L~~~~-~~-----~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~-- 831 (919)
+.|+++++...... .+ .. ...+++|++|++++|. .. ++..+..+ ++|++|+|++|.+....+..+..
T Consensus 230 ~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l 308 (461)
T 1z7x_W 230 RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK-ESLKELSLAGNELGDEGARLLCETL 308 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC-TTCCEEECTTCCCHHHHHHHHHHHH
T ss_pred cEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhC-CCcceEECCCCCCchHHHHHHHHHh
Confidence 77777543211100 00 11 2246677777777653 21 34444444 77777777777664433333332
Q ss_pred ---CCCCCeEEEeeccccCee---EEEcCCCCcccceeEEecCCcccEEEcc------CCcccccceEEccccCccC---
Q 036584 832 ---LPNLIILDLHFRCHYVKK---LGCRAEGFPLLEILQLDADGLVEWQVEE------GAMPVLRGLKIAAEIPKLK--- 896 (919)
Q Consensus 832 ---lp~L~~L~L~~~~~~~~~---~~~~~~~f~~L~~L~l~~~~l~~~~~~~------~~~p~L~~L~l~~nC~~l~--- 896 (919)
.++|+.|+|++|.+.... +......+++|++|+++.|.++...... ...++|++|++++ | .++
T Consensus 309 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~-n-~i~~~~ 386 (461)
T 1z7x_W 309 LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD-C-DVSDSS 386 (461)
T ss_dssp TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT-S-CCCHHH
T ss_pred ccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCC-C-CCChhh
Confidence 256777777655433221 1111223466777777655554321110 1145677777766 4 233
Q ss_pred ---CcccccCCCCCCeeEecccC
Q 036584 897 ---IPERLRSVPPPAEWECEDSR 916 (919)
Q Consensus 897 ---lp~~l~~L~~L~~l~~~~~~ 916 (919)
+|..+..+++|+++++++++
T Consensus 387 ~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 387 CSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHHHHCCCCCEEECCSSS
T ss_pred HHHHHHHHHhCCCccEEECCCCC
Confidence 55566666677777666653
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.68 E-value=2.1e-18 Score=186.89 Aligned_cols=244 Identities=14% Similarity=0.136 Sum_probs=141.9
Q ss_pred hhhhccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccChhhhcCCCCcEEecCCCCCccccc
Q 036584 604 PLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVEL 683 (919)
Q Consensus 604 ~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~l 683 (919)
...+..+++|++|+|++ +. +.. ..|..++++++|++|+|++|.+..+++ +..+++|++|++++| .+..+
T Consensus 27 ~~~~~~~~~L~~L~L~~-n~-----l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n--~l~~l 95 (317)
T 3o53_A 27 ASLRQSAWNVKELDLSG-NP-----LSQ--ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN--YVQEL 95 (317)
T ss_dssp HHHHTTGGGCSEEECTT-SC-----CCC--CCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS--EEEEE
T ss_pred HHHhccCCCCCEEECcC-Cc-----cCc--CCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC--ccccc
Confidence 34455666777777777 66 652 334567777777777777777765554 777777777777777 55554
Q ss_pred CccccccccccccccccccccCCCCcCcCcccccccccccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCC
Q 036584 684 PIEINMMQELRHLIGNFKGTLPIENLTNLQTLKYVQSKSWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNL 763 (919)
Q Consensus 684 p~~i~~L~~L~~L~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L 763 (919)
|. +++|++| .+..+..... ....+++|+.|+++++... ... +..+..+++|
T Consensus 96 ~~----~~~L~~L-------------------~l~~n~l~~~-~~~~~~~L~~L~l~~N~l~---~~~--~~~~~~l~~L 146 (317)
T 3o53_A 96 LV----GPSIETL-------------------HAANNNISRV-SCSRGQGKKNIYLANNKIT---MLR--DLDEGCRSRV 146 (317)
T ss_dssp EE----CTTCCEE-------------------ECCSSCCSEE-EECCCSSCEEEECCSSCCC---SGG--GBCTGGGSSE
T ss_pred cC----CCCcCEE-------------------ECCCCccCCc-CccccCCCCEEECCCCCCC---Ccc--chhhhccCCC
Confidence 42 2444444 3333321110 1123455666666665422 111 1345556677
Q ss_pred cEEEEeecCCCCccCcC--CC-CCCCCceeEEEceec-CCCCcchhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEE
Q 036584 764 RFLSVKLLDANSFASLQ--PL-SHCQCLVDLRLSGRM-KKLPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILD 839 (919)
Q Consensus 764 ~~L~l~~~~~~~~~~~~--~l-~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~ 839 (919)
+.|++++ +.+..+. .+ ..+++|++|++++|. ..+|... .+ ++|+.|+|++|.++. .++.+..+++|+.|+
T Consensus 147 ~~L~Ls~---N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~l-~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~ 220 (317)
T 3o53_A 147 QYLDLKL---NEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VF-AKLKTLDLSSNKLAF-MGPEFQSAAGVTWIS 220 (317)
T ss_dssp EEEECTT---SCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-CC-TTCCEEECCSSCCCE-ECGGGGGGTTCSEEE
T ss_pred CEEECCC---CCCCcccHHHHhhccCcCCEEECCCCcCccccccc-cc-ccCCEEECCCCcCCc-chhhhcccCcccEEE
Confidence 7777643 2332221 12 345677777777664 3333222 23 777778887777764 334577777788888
Q ss_pred EeeccccCeeEEEcCCCCcccceeEEecCCcc--cEEEccCCcccccceEEccccCccC
Q 036584 840 LHFRCHYVKKLGCRAEGFPLLEILQLDADGLV--EWQVEEGAMPVLRGLKIAAEIPKLK 896 (919)
Q Consensus 840 L~~~~~~~~~~~~~~~~f~~L~~L~l~~~~l~--~~~~~~~~~p~L~~L~l~~nC~~l~ 896 (919)
|++|.+. .++.....+++|+.|+++.|.+. .++.....++.|+.|++.+ |+.++
T Consensus 221 L~~N~l~--~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~-~~~l~ 276 (317)
T 3o53_A 221 LRNNKLV--LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT-VKKLT 276 (317)
T ss_dssp CTTSCCC--EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH-HHHHH
T ss_pred CcCCccc--chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC-chhcc
Confidence 7755443 34444556777788877766665 2222335677888888876 66666
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.68 E-value=9.9e-18 Score=181.64 Aligned_cols=253 Identities=12% Similarity=0.057 Sum_probs=181.5
Q ss_pred ceEEEEEeccCccccccccccchhhhh-hhcccccceEEeecCCCccccC-hhhhcCCCCcEEecCCCCCcccccCcccc
Q 036584 611 FLLRVFDVEADLDRESTLMHWSNRLSE-KIGDLIHLKYLGLRNSNIGILP-SSIVKLQRLQTLDFSGDVGCPVELPIEIN 688 (919)
Q Consensus 611 ~~LrvL~L~~~~~~~~~~i~~~~~lp~-~i~~L~~Lr~L~L~~~~i~~LP-~~l~~L~~L~~L~L~~~~~~~~~lp~~i~ 688 (919)
..+++++++. +. +. ..+. .+..+++|++|+|++|.++.++ ..+..+++|++|++++| .+..++. +.
T Consensus 10 ~~l~i~~ls~-~~-----l~---~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~-~~ 77 (317)
T 3o53_A 10 NRYKIEKVTD-SS-----LK---QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN--VLYETLD-LE 77 (317)
T ss_dssp TEEEEESCCT-TT-----HH---HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS--CCEEEEE-ET
T ss_pred CceeEeeccc-cc-----hh---hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC--cCCcchh-hh
Confidence 4577888888 66 55 4443 3456789999999999997776 58999999999999999 6665554 44
Q ss_pred ccccccccccccccccCCCCcCcCcccccccccccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEE
Q 036584 689 MMQELRHLIGNFKGTLPIENLTNLQTLKYVQSKSWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSV 768 (919)
Q Consensus 689 ~L~~L~~L~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 768 (919)
.+++ |++|++..+. +..+...++|+.|.++++... ... ...+++|+.|++
T Consensus 78 ~l~~-------------------L~~L~Ls~n~---l~~l~~~~~L~~L~l~~n~l~---~~~-----~~~~~~L~~L~l 127 (317)
T 3o53_A 78 SLST-------------------LRTLDLNNNY---VQELLVGPSIETLHAANNNIS---RVS-----CSRGQGKKNIYL 127 (317)
T ss_dssp TCTT-------------------CCEEECCSSE---EEEEEECTTCCEEECCSSCCS---EEE-----ECCCSSCEEEEC
T ss_pred hcCC-------------------CCEEECcCCc---cccccCCCCcCEEECCCCccC---CcC-----ccccCCCCEEEC
Confidence 4444 4444444443 122334489999999988632 111 123678999999
Q ss_pred eecCCCCccCcC--CCCCCCCceeEEEceec-CC-CCcchhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeecc
Q 036584 769 KLLDANSFASLQ--PLSHCQCLVDLRLSGRM-KK-LPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRC 844 (919)
Q Consensus 769 ~~~~~~~~~~~~--~l~~~~~L~~L~L~~~~-~~-~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~ 844 (919)
++ +.+..+. .+..+++|+.|++++|. .. .|..+...+++|++|+|++|.++.. +....+++|+.|+|++|.
T Consensus 128 ~~---N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~ 202 (317)
T 3o53_A 128 AN---NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNK 202 (317)
T ss_dssp CS---SCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSC
T ss_pred CC---CCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCc
Confidence 54 4443333 35668999999999975 33 3444542239999999999998643 445569999999999776
Q ss_pred ccCeeEEEcCCCCcccceeEEecCCcccEEEccCCcccccceEEccccCcc-C-CcccccCCCCCCeeEec
Q 036584 845 HYVKKLGCRAEGFPLLEILQLDADGLVEWQVEEGAMPVLRGLKIAAEIPKL-K-IPERLRSVPPPAEWECE 913 (919)
Q Consensus 845 ~~~~~~~~~~~~f~~L~~L~l~~~~l~~~~~~~~~~p~L~~L~l~~nC~~l-~-lp~~l~~L~~L~~l~~~ 913 (919)
.. .++.....+++|+.|+++.|.++.++.....+++|+.|++++ |+-. . +|..+..++.|+.+++.
T Consensus 203 l~--~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~-N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 203 LA--FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG-NGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CC--EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTT-CCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred CC--cchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccC-CCccCcCHHHHHhccccceEEECC
Confidence 54 344446678999999999889998876667899999999998 5444 2 77777777777777665
No 62
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.67 E-value=5.9e-16 Score=174.58 Aligned_cols=298 Identities=12% Similarity=0.052 Sum_probs=184.5
Q ss_pred CCCCccccccCHHHHHHHH-hcC--C--CCcEEEEE--EecCCchHHHHHHHHHcccCcc---CCC-CEEEEEEeCCCCC
Q 036584 201 VEENPVGFEDDTDLLLAKL-LDK--E--QRRLVISI--YGMGGLGKTTLARKLYHNNDVK---NKF-DYCAWVSVSQDYK 269 (919)
Q Consensus 201 ~~~~~vGr~~~~~~l~~~L-~~~--~--~~~~vv~I--~G~~GiGKTtLa~~v~~~~~~~---~~f-~~~~wv~~~~~~~ 269 (919)
.+..++||+++++.+.+++ ... . .....+.| +|++|+||||||+.+++..... ..| ..++|+++.+..+
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 3468999999999999998 531 1 23567777 9999999999999999842211 112 2367888777778
Q ss_pred HHHHHHHHHHHhcccccccccccCCHHHHHHHHHHHhc--cCceEEEEecccchh--------HHHHHHhhC---CCCC-
Q 036584 270 IKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSLE--AYSYLMVIDDIWHKE--------DWVSLKSAF---PENK- 335 (919)
Q Consensus 270 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~--------~~~~l~~~l---~~~~- 335 (919)
...++..++.+++.... ....+...+...+.+.+. +++++|||||++... .+..+...+ +..+
T Consensus 100 ~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~ 176 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQ---VRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDG 176 (412)
T ss_dssp HHHHHHHHHHHHTCCCC---CTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTS
T ss_pred HHHHHHHHHHHhCCCCC---CCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCC
Confidence 88999999998865321 112345666777777764 679999999997642 233333322 2112
Q ss_pred -CCcEEEEEecchhhhhhc--------CCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcC------
Q 036584 336 -IGSRVIITTRIKDVAERS--------DDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCD------ 400 (919)
Q Consensus 336 -~gs~iivTtr~~~v~~~~--------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~------ 400 (919)
....+|+||+...+.... ......+.+++++.++++++|..++...........+....|++.|+
T Consensus 177 ~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 256 (412)
T 1w5s_A 177 VNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGD 256 (412)
T ss_dssp CCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSC
T ss_pred CceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCC
Confidence 455688888765532111 11123499999999999999976643111111112456778999999
Q ss_pred CcchHHHHHHHHhc------CC---ChHHHHHHHHHHHHhhcCCchhh-HHHHHhccccchHHHHHHHhHhcCCC--CCc
Q 036584 401 GLPLAIVVLGGLLS------TK---RPQEWREVRNHIWRHLRNDSIQV-SYLLDLSFNDLSHQLKLCFLYLSLFP--EDF 468 (919)
Q Consensus 401 G~PLal~~~~~~l~------~~---~~~~w~~~~~~~~~~l~~~~~~i-~~~l~~sy~~L~~~~k~c~~~~s~fp--~~~ 468 (919)
|.|..+..+..... .. +.+.+..+.... . ...+.-++..||++.+.++..++.+. .+.
T Consensus 257 G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~----------~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~ 326 (412)
T 1w5s_A 257 GSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN----------EAASIQTHELEALSIHELIILRLIAEATLGGME 326 (412)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC----------------CCSSSSSCHHHHHHHHHHHHHHHTTCS
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH----------hccchHHHHHHcCCHHHHHHHHHHHHHHhcCCC
Confidence 99976655543221 11 122333222211 1 23455677899999999999888653 233
Q ss_pred eecHHHHHHHHH--H-cCCcccCCCCCHHHHHHHHHHHHHHcccccccc
Q 036584 469 VINVEKLIRLLV--A-EGFIRQDEDRTMEEVAKDILDELINRSLIQVEK 514 (919)
Q Consensus 469 ~i~~~~li~~w~--a-eg~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~ 514 (919)
.+....+...+. + .-. . ...........++++|...++|....
T Consensus 327 ~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 327 WINAGLLRQRYEDASLTMY-N--VKPRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp SBCHHHHHHHHHHHHHHHS-C--CCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CccHHHHHHHHHHHHHhhc-C--CCCCCHHHHHHHHHHHHhCCCEEeec
Confidence 466666555442 2 111 0 01112345678999999999998654
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.67 E-value=1.8e-16 Score=171.03 Aligned_cols=65 Identities=22% Similarity=0.350 Sum_probs=30.5
Q ss_pred hhccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccChhhhcCCCCcEEecCCC
Q 036584 606 LFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGD 676 (919)
Q Consensus 606 ~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~ 676 (919)
.|.++++|++|+|++ +. +...+..|..+..+++|++|+|++|.+..+|..+..+++|++|++++|
T Consensus 47 ~~~~l~~L~~L~L~~-n~-----l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n 111 (306)
T 2z66_A 47 VFDKLTQLTKLSLSS-NG-----LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 111 (306)
T ss_dssp TTTTCTTCSEEECCS-SC-----CCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTS
T ss_pred HhhccccCCEEECCC-Cc-----cCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCC
Confidence 344555555555555 44 331111233444455555555555555555544555555555555554
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.66 E-value=4.3e-16 Score=177.74 Aligned_cols=147 Identities=20% Similarity=0.176 Sum_probs=93.2
Q ss_pred CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccC
Q 036584 580 NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILP 659 (919)
Q Consensus 580 ~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP 659 (919)
.++++.|.+.++. +....+..|.++++|++|+|++ +. +.. ..|..+.++++|++|+|++|.++.+|
T Consensus 74 ~~~l~~L~L~~n~------i~~~~~~~~~~l~~L~~L~Ls~-n~-----i~~--~~~~~~~~l~~L~~L~L~~n~l~~~~ 139 (452)
T 3zyi_A 74 PSNTRYLNLMENN------IQMIQADTFRHLHHLEVLQLGR-NS-----IRQ--IEVGAFNGLASLNTLELFDNWLTVIP 139 (452)
T ss_dssp CTTCSEEECCSSC------CCEECTTTTTTCTTCCEEECCS-SC-----CCE--ECTTTTTTCTTCCEEECCSSCCSBCC
T ss_pred CCCccEEECcCCc------CceECHHHcCCCCCCCEEECCC-Cc-----cCC--cChhhccCcccCCEEECCCCcCCccC
Confidence 5788888888872 2335566788888888888888 77 662 33467888888888888888888777
Q ss_pred hh-hhcCCCCcEEecCCCCCcccccCc-ccccccccccccccc-----cc-ccCCCCcCcCcccccccccccchhhccCC
Q 036584 660 SS-IVKLQRLQTLDFSGDVGCPVELPI-EINMMQELRHLIGNF-----KG-TLPIENLTNLQTLKYVQSKSWNKVNTAKL 731 (919)
Q Consensus 660 ~~-l~~L~~L~~L~L~~~~~~~~~lp~-~i~~L~~L~~L~~~~-----~~-~~~i~~l~~L~~L~~~~~~~~~~~~l~~l 731 (919)
.. +..+++|++|+|++| .+..+|. .+.++++|+.|.... .. ...+..+++|+.|++..+.......+..+
T Consensus 140 ~~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l 217 (452)
T 3zyi_A 140 SGAFEYLSKLRELWLRNN--PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPL 217 (452)
T ss_dssp TTTSSSCTTCCEEECCSC--CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTC
T ss_pred hhhhcccCCCCEEECCCC--CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccccccc
Confidence 64 778888888888888 6777766 456666666663211 00 11144444444444444442222334444
Q ss_pred CCCCeEEeeec
Q 036584 732 VNLRDLHIEED 742 (919)
Q Consensus 732 ~~L~~L~i~~~ 742 (919)
++|+.|+++++
T Consensus 218 ~~L~~L~Ls~N 228 (452)
T 3zyi_A 218 VGLEELEMSGN 228 (452)
T ss_dssp TTCCEEECTTS
T ss_pred ccccEEECcCC
Confidence 44444444443
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.66 E-value=2.8e-16 Score=179.27 Aligned_cols=218 Identities=19% Similarity=0.195 Sum_probs=129.2
Q ss_pred ceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccC-hhhhcCCCCcEEecCCCCCcccccCcc-cc
Q 036584 611 FLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILP-SSIVKLQRLQTLDFSGDVGCPVELPIE-IN 688 (919)
Q Consensus 611 ~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP-~~l~~L~~L~~L~L~~~~~~~~~lp~~-i~ 688 (919)
+.|++|+|++ +. +.. ..|..+.++++|++|+|++|.|+.++ ..+..+++|++|+|++| .+..+|.. +.
T Consensus 75 ~~l~~L~L~~-n~-----i~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~ 144 (452)
T 3zyi_A 75 SNTRYLNLME-NN-----IQM--IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN--WLTVIPSGAFE 144 (452)
T ss_dssp TTCSEEECCS-SC-----CCE--ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS--CCSBCCTTTSS
T ss_pred CCccEEECcC-Cc-----Cce--ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC--cCCccChhhhc
Confidence 5789999999 77 762 34677899999999999999997765 57899999999999999 78888765 55
Q ss_pred ccccccccccccccccCCCCcCcCccccccccc--ccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEE
Q 036584 689 MMQELRHLIGNFKGTLPIENLTNLQTLKYVQSK--SWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFL 766 (919)
Q Consensus 689 ~L~~L~~L~~~~~~~~~i~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L 766 (919)
.+++|++|. +..+. ......+..+++|+.|+++.+.. .... ....+..+++|+.|
T Consensus 145 ~l~~L~~L~-------------------L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~---l~~i-~~~~~~~l~~L~~L 201 (452)
T 3zyi_A 145 YLSKLRELW-------------------LRNNPIESIPSYAFNRVPSLMRLDLGELKK---LEYI-SEGAFEGLFNLKYL 201 (452)
T ss_dssp SCTTCCEEE-------------------CCSCCCCEECTTTTTTCTTCCEEECCCCTT---CCEE-CTTTTTTCTTCCEE
T ss_pred ccCCCCEEE-------------------CCCCCcceeCHhHHhcCCcccEEeCCCCCC---cccc-ChhhccCCCCCCEE
Confidence 566666663 22222 11122344455555555554321 1111 11345555666666
Q ss_pred EEeecCCCCccCcCCCCCCCCceeEEEceec-CC-CCcchhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeecc
Q 036584 767 SVKLLDANSFASLQPLSHCQCLVDLRLSGRM-KK-LPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRC 844 (919)
Q Consensus 767 ~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~-~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~ 844 (919)
+++ .+.+..+..+..+++|+.|+|++|. .. .|.++..+ ++|+.|+|++|.+....+..+..+++|+.|+|++|.
T Consensus 202 ~L~---~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 202 NLG---MCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGL-SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp ECT---TSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ECC---CCcccccccccccccccEEECcCCcCcccCcccccCc-cCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc
Confidence 653 2333334445555666666666553 22 34444444 666666666666655555556666666666666444
Q ss_pred ccCeeEEEcCCCCcccceeEEe
Q 036584 845 HYVKKLGCRAEGFPLLEILQLD 866 (919)
Q Consensus 845 ~~~~~~~~~~~~f~~L~~L~l~ 866 (919)
+... .......+++|+.|+|+
T Consensus 278 l~~~-~~~~~~~l~~L~~L~L~ 298 (452)
T 3zyi_A 278 LSSL-PHDLFTPLRYLVELHLH 298 (452)
T ss_dssp CSCC-CTTSSTTCTTCCEEECC
T ss_pred CCcc-ChHHhccccCCCEEEcc
Confidence 3211 11112345566666665
No 66
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.66 E-value=6.5e-16 Score=175.61 Aligned_cols=163 Identities=17% Similarity=0.164 Sum_probs=100.9
Q ss_pred EEEEecCCCCccccccCCCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhhhhccc
Q 036584 563 RQAIYSHSPSYFWLHHGNSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDL 642 (919)
Q Consensus 563 ~l~l~~~~~~~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L 642 (919)
.+.........++ ....++++.|.+.++. .....+..|.++++|++|+|++ +. +.. ..+..+.++
T Consensus 47 ~v~c~~~~l~~iP-~~~~~~l~~L~L~~n~------i~~~~~~~~~~l~~L~~L~Ls~-n~-----i~~--i~~~~~~~l 111 (440)
T 3zyj_A 47 KVICVRKNLREVP-DGISTNTRLLNLHENQ------IQIIKVNSFKHLRHLEILQLSR-NH-----IRT--IEIGAFNGL 111 (440)
T ss_dssp EEECCSCCCSSCC-SCCCTTCSEEECCSCC------CCEECTTTTSSCSSCCEEECCS-SC-----CCE--ECGGGGTTC
T ss_pred EEEeCCCCcCcCC-CCCCCCCcEEEccCCc------CCeeCHHHhhCCCCCCEEECCC-Cc-----CCc--cChhhccCC
Confidence 3444433333333 2335788888888872 2334456788888899999988 77 662 234678888
Q ss_pred ccceEEeecCCCccccCh-hhhcCCCCcEEecCCCCCcccccCc-ccccccccccccccc------ccccCCCCcCcCcc
Q 036584 643 IHLKYLGLRNSNIGILPS-SIVKLQRLQTLDFSGDVGCPVELPI-EINMMQELRHLIGNF------KGTLPIENLTNLQT 714 (919)
Q Consensus 643 ~~Lr~L~L~~~~i~~LP~-~l~~L~~L~~L~L~~~~~~~~~lp~-~i~~L~~L~~L~~~~------~~~~~i~~l~~L~~ 714 (919)
++|++|+|++|.|+.+|. .+..+++|++|++++| .+..+|. .+..+++|++|.... ..+..+..+++|+.
T Consensus 112 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N--~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~ 189 (440)
T 3zyj_A 112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN--PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189 (440)
T ss_dssp SSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC--CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCE
T ss_pred ccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC--cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCe
Confidence 899999999998888876 5888889999999888 6777766 456667777663211 01112444555555
Q ss_pred cccccccccchhhccCCCCCCeEEeeec
Q 036584 715 LKYVQSKSWNKVNTAKLVNLRDLHIEED 742 (919)
Q Consensus 715 L~~~~~~~~~~~~l~~l~~L~~L~i~~~ 742 (919)
|++..+.......+..+++|+.|+++++
T Consensus 190 L~L~~n~l~~~~~~~~l~~L~~L~Ls~N 217 (440)
T 3zyj_A 190 LNLAMCNLREIPNLTPLIKLDELDLSGN 217 (440)
T ss_dssp EECTTSCCSSCCCCTTCSSCCEEECTTS
T ss_pred ecCCCCcCccccccCCCcccCEEECCCC
Confidence 5544444223333444444444444444
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.65 E-value=3.8e-16 Score=182.92 Aligned_cols=252 Identities=17% Similarity=0.018 Sum_probs=151.7
Q ss_pred CeeEEEEecCCCCccccccCCCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhhhh
Q 036584 560 SCRRQAIYSHSPSYFWLHHGNSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKI 639 (919)
Q Consensus 560 ~~r~l~l~~~~~~~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i 639 (919)
.++.+.+..+....++. ...++|+.|.+.++. . . .+|. .+++|++|+|++ |. +. .+|.
T Consensus 41 ~l~~L~ls~n~L~~lp~-~l~~~L~~L~L~~N~-----l-~-~lp~---~l~~L~~L~Ls~-N~-----l~---~lp~-- 98 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPD-CLPAHITTLVIPDNN-----L-T-SLPA---LPPELRTLEVSG-NQ-----LT---SLPV-- 98 (622)
T ss_dssp CCCEEECCSSCCSCCCS-CCCTTCSEEEECSCC-----C-S-CCCC---CCTTCCEEEECS-CC-----CS---CCCC--
T ss_pred CCcEEEecCCCcCccCh-hhCCCCcEEEecCCC-----C-C-CCCC---cCCCCCEEEcCC-Cc-----CC---cCCC--
Confidence 46778888666665542 235788999988882 1 1 2333 567888899998 77 77 6775
Q ss_pred cccccceEEeecCCCccccChhhhcCCCCcEEecCCCCCcccccCccccccccccccccccccccCCCCcCcCccccccc
Q 036584 640 GDLIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVELPIEINMMQELRHLIGNFKGTLPIENLTNLQTLKYVQ 719 (919)
Q Consensus 640 ~~L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~i~~l~~L~~L~~~~ 719 (919)
.+++|++|+|++|.|+.+|. .+.+|++|++++| .+..+|..+ ++|++|. +..
T Consensus 99 -~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N--~l~~lp~~l---~~L~~L~-------------------Ls~ 150 (622)
T 3g06_A 99 -LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGN--QLTSLPVLP---PGLQELS-------------------VSD 150 (622)
T ss_dssp -CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSS--CCSCCCCCC---TTCCEEE-------------------CCS
T ss_pred -CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCC--CCCcCCCCC---CCCCEEE-------------------CcC
Confidence 67889999999998888887 6788889999888 777777643 5555553 222
Q ss_pred ccccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCcCCCCCCCCceeEEEceec-C
Q 036584 720 SKSWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASLQPLSHCQCLVDLRLSGRM-K 798 (919)
Q Consensus 720 ~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~ 798 (919)
|....+. ..+.+|+.|.++++... .. . ..+++|+.|++++ |.+..++. .+++|+.|++++|. .
T Consensus 151 N~l~~l~--~~~~~L~~L~L~~N~l~----~l---~--~~~~~L~~L~Ls~---N~l~~l~~--~~~~L~~L~L~~N~l~ 214 (622)
T 3g06_A 151 NQLASLP--ALPSELCKLWAYNNQLT----SL---P--MLPSGLQELSVSD---NQLASLPT--LPSELYKLWAYNNRLT 214 (622)
T ss_dssp SCCSCCC--CCCTTCCEEECCSSCCS----CC---C--CCCTTCCEEECCS---SCCSCCCC--CCTTCCEEECCSSCCS
T ss_pred CcCCCcC--CccCCCCEEECCCCCCC----CC---c--ccCCCCcEEECCC---CCCCCCCC--ccchhhEEECcCCccc
Confidence 2210000 12345556666555321 11 1 2245666666633 23322222 23566667666653 3
Q ss_pred CCCcchhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccccCeeEEEcCCCCcccceeEEecCCcccEEEccC
Q 036584 799 KLPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHYVKKLGCRAEGFPLLEILQLDADGLVEWQVEEG 878 (919)
Q Consensus 799 ~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~l~~~~l~~~~~~~~ 878 (919)
.+|.. +++|+.|+|++|.++..+ ..+++|+.|+|++|.+.. ++. .+++|+.|+|+.|+++.++....
T Consensus 215 ~l~~~----~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~--lp~---~~~~L~~L~Ls~N~L~~lp~~l~ 281 (622)
T 3g06_A 215 SLPAL----PSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTS--LPM---LPSGLLSLSVYRNQLTRLPESLI 281 (622)
T ss_dssp SCCCC----CTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCCSCCGGGG
T ss_pred ccCCC----CCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCc--CCc---ccccCcEEeCCCCCCCcCCHHHh
Confidence 44431 266777777777665422 455667777776554331 221 45667777777666666655555
Q ss_pred CcccccceEEcc
Q 036584 879 AMPVLRGLKIAA 890 (919)
Q Consensus 879 ~~p~L~~L~l~~ 890 (919)
.+++|+.|++++
T Consensus 282 ~l~~L~~L~L~~ 293 (622)
T 3g06_A 282 HLSSETTVNLEG 293 (622)
T ss_dssp GSCTTCEEECCS
T ss_pred hccccCEEEecC
Confidence 667777777776
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.65 E-value=7.5e-17 Score=185.09 Aligned_cols=73 Identities=16% Similarity=0.238 Sum_probs=52.4
Q ss_pred cCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccChhhhcCCCCcEEecCCCCCcccccCcccc
Q 036584 609 RFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVELPIEIN 688 (919)
Q Consensus 609 ~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~~i~ 688 (919)
.+++|++|+|++ +. +.. ..|..++.+++|++|+|++|.++.+++ +..+++|++|+|++| .+..+|..
T Consensus 32 ~~~~L~~L~Ls~-n~-----l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N--~l~~l~~~-- 98 (487)
T 3oja_A 32 SAWNVKELDLSG-NP-----LSQ--ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN--YVQELLVG-- 98 (487)
T ss_dssp TGGGCCEEECCS-SC-----CCC--CCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS--EEEEEEEC--
T ss_pred cCCCccEEEeeC-Cc-----CCC--CCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC--cCCCCCCC--
Confidence 344788888888 77 662 335678888888888888888865554 888888888888888 66666542
Q ss_pred cccccccc
Q 036584 689 MMQELRHL 696 (919)
Q Consensus 689 ~L~~L~~L 696 (919)
++|++|
T Consensus 99 --~~L~~L 104 (487)
T 3oja_A 99 --PSIETL 104 (487)
T ss_dssp --TTCCEE
T ss_pred --CCcCEE
Confidence 555555
No 69
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.65 E-value=6.6e-15 Score=162.43 Aligned_cols=293 Identities=13% Similarity=0.085 Sum_probs=176.5
Q ss_pred CCCCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCC-----CCHHHHHH
Q 036584 201 VEENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQD-----YKIKDLLL 275 (919)
Q Consensus 201 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~ 275 (919)
.+..|+||+++++.+.+ +.. +++.|+|++|+|||||++++++. ... ..+|+++... .+....+.
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYKDFLL 79 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHHHHHH
Confidence 45679999999999999 654 59999999999999999999984 222 2578887643 34455555
Q ss_pred HHHHHhcc-------------c---cccc----cc-----ccCCHHHHHHHHHHHhccCceEEEEecccchh-----HHH
Q 036584 276 RIIKSFNI-------------M---TALE----DL-----ETKTEEDLARSLRKSLEAYSYLMVIDDIWHKE-----DWV 325 (919)
Q Consensus 276 ~il~~l~~-------------~---~~~~----~~-----~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-----~~~ 325 (919)
.+...+.. . ...+ .. .......+...+.+... ++.+|||||++... +|.
T Consensus 80 ~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~ 158 (357)
T 2fna_A 80 ELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLL 158 (357)
T ss_dssp HHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCH
T ss_pred HHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHH
Confidence 54444321 0 0000 00 12234555555544322 49999999997632 333
Q ss_pred HHHhhCCCCCCCcEEEEEecchhhhh-h---------cCCC-CceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHH
Q 036584 326 SLKSAFPENKIGSRVIITTRIKDVAE-R---------SDDR-NYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGRE 394 (919)
Q Consensus 326 ~l~~~l~~~~~gs~iivTtr~~~v~~-~---------~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~ 394 (919)
.+...+.....+.++|+|++...... . .... ...+.+.+|+.+++.+++...........+. ..+
T Consensus 159 ~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~~~ 234 (357)
T 2fna_A 159 PALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----YEV 234 (357)
T ss_dssp HHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----HHH
T ss_pred HHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----HHH
Confidence 33333222223678999999765321 1 1111 1578999999999999998754321111222 178
Q ss_pred HHHHcCCcchHHHHHHHHhcCC-ChHHHHH-HHHHHHHhhcCCchhhHHHHH-hcc--ccchHHHHHHHhHhcCCCCCce
Q 036584 395 MVQKCDGLPLAIVVLGGLLSTK-RPQEWRE-VRNHIWRHLRNDSIQVSYLLD-LSF--NDLSHQLKLCFLYLSLFPEDFV 469 (919)
Q Consensus 395 I~~~~~G~PLal~~~~~~l~~~-~~~~w~~-~~~~~~~~l~~~~~~i~~~l~-~sy--~~L~~~~k~c~~~~s~fp~~~~ 469 (919)
|++.|+|+|+++..++..+... +...|.. +.+.... .+..-+. +.+ ..||+..+..+..+|. +.
T Consensus 235 i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~l~~~~~~~l~~la~---g~- 303 (357)
T 2fna_A 235 VYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKK-------LILKEFENFLHGREIARKRYLNIMRTLSK---CG- 303 (357)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-------HHHHHHHHHHTTCGGGHHHHHHHHHHHTT---CB-
T ss_pred HHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHH-------HHHHHHHHHhhccccccHHHHHHHHHHHc---CC-
Confidence 9999999999999998876433 3333321 1111111 1111111 211 1688999999999998 21
Q ss_pred ecHHHHHHHHH-HcCCcccCCCCCHHHHHHHHHHHHHHcccccccccCCCceeEEE-ecHHHHHHH
Q 036584 470 INVEKLIRLLV-AEGFIRQDEDRTMEEVAKDILDELINRSLIQVEKRCWGRISTCR-VHDLLRDLA 533 (919)
Q Consensus 470 i~~~~li~~w~-aeg~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~~~~~~~~~~~-~H~lv~~~~ 533 (919)
+...+....- ..|. .........+++.|.+.++|.... ..|+ .|++++++.
T Consensus 304 -~~~~l~~~~~~~~g~------~~~~~~~~~~L~~L~~~gli~~~~------~~y~f~~~~~~~~l 356 (357)
T 2fna_A 304 -KWSDVKRALELEEGI------EISDSEIYNYLTQLTKHSWIIKEG------EKYCPSEPLISLAF 356 (357)
T ss_dssp -CHHHHHHHHHHHHCS------CCCHHHHHHHHHHHHHTTSEEESS------SCEEESSHHHHHHT
T ss_pred -CHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhCCCEEecC------CEEEecCHHHHHhh
Confidence 4444433221 1121 012345778999999999997653 1254 689998874
No 70
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.64 E-value=4.9e-16 Score=176.62 Aligned_cols=211 Identities=17% Similarity=0.198 Sum_probs=123.7
Q ss_pred ceEEEEEeccCccccccccccchhh-hhhhcccccceEEeecCCCccccC-hhhhcCCCCcEEecCCCCCcccccCc-cc
Q 036584 611 FLLRVFDVEADLDRESTLMHWSNRL-SEKIGDLIHLKYLGLRNSNIGILP-SSIVKLQRLQTLDFSGDVGCPVELPI-EI 687 (919)
Q Consensus 611 ~~LrvL~L~~~~~~~~~~i~~~~~l-p~~i~~L~~Lr~L~L~~~~i~~LP-~~l~~L~~L~~L~L~~~~~~~~~lp~-~i 687 (919)
+.+++|+|++ +. +. .+ +..+.++++|++|+|++|.|..++ ..+..+++|++|+|++| .+..+|. .+
T Consensus 64 ~~l~~L~L~~-n~-----i~---~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~ 132 (440)
T 3zyj_A 64 TNTRLLNLHE-NQ-----IQ---IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN--RLTTIPNGAF 132 (440)
T ss_dssp TTCSEEECCS-CC-----CC---EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS--CCSSCCTTTS
T ss_pred CCCcEEEccC-Cc-----CC---eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC--cCCeeCHhHh
Confidence 5789999999 87 76 44 477899999999999999997776 57899999999999999 7888887 46
Q ss_pred cccccccccccc---ccc--ccCCCCcCcCccccccccc---ccchhhccCCCCCCeEEeeecCccccccccchhhHHhh
Q 036584 688 NMMQELRHLIGN---FKG--TLPIENLTNLQTLKYVQSK---SWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAK 759 (919)
Q Consensus 688 ~~L~~L~~L~~~---~~~--~~~i~~l~~L~~L~~~~~~---~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~ 759 (919)
..+++|++|... ... +..+..+++|++|++..++ ......+..+++|+.|+++++... .. ..+..
T Consensus 133 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~----~~---~~~~~ 205 (440)
T 3zyj_A 133 VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR----EI---PNLTP 205 (440)
T ss_dssp CSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS----SC---CCCTT
T ss_pred hccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc----cc---cccCC
Confidence 777777777321 111 1125555666666555433 112223445555555555554311 11 12344
Q ss_pred cCCCcEEEEeecCCCCccCc--CCCCCCCCceeEEEceec-CC-CCcchhccCCCcceEEEEccCCCCCCchhhhcCCCC
Q 036584 760 LKNLRFLSVKLLDANSFASL--QPLSHCQCLVDLRLSGRM-KK-LPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNL 835 (919)
Q Consensus 760 l~~L~~L~l~~~~~~~~~~~--~~l~~~~~L~~L~L~~~~-~~-~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L 835 (919)
+++|+.|+|++ |.+..+ ..+..+++|++|+|++|. .. .|..+..+ ++|+.|+|++|.++..+...+..+++|
T Consensus 206 l~~L~~L~Ls~---N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L 281 (440)
T 3zyj_A 206 LIKLDELDLSG---NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL-QSLVEINLAHNNLTLLPHDLFTPLHHL 281 (440)
T ss_dssp CSSCCEEECTT---SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTC-TTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred CcccCEEECCC---CccCccChhhhccCccCCEEECCCCceeEEChhhhcCC-CCCCEEECCCCCCCccChhHhccccCC
Confidence 45555555532 222222 124445555555555543 21 23333333 555555555555554444445555555
Q ss_pred CeEEEeec
Q 036584 836 IILDLHFR 843 (919)
Q Consensus 836 ~~L~L~~~ 843 (919)
+.|+|++|
T Consensus 282 ~~L~L~~N 289 (440)
T 3zyj_A 282 ERIHLHHN 289 (440)
T ss_dssp CEEECCSS
T ss_pred CEEEcCCC
Confidence 55555544
No 71
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.62 E-value=8.3e-16 Score=165.71 Aligned_cols=221 Identities=19% Similarity=0.187 Sum_probs=133.0
Q ss_pred ceEEEEEeccCccccccccccchhhhhh-hcccccceEEeecCCCcccc---ChhhhcCCCCcEEecCCCCCcccccCcc
Q 036584 611 FLLRVFDVEADLDRESTLMHWSNRLSEK-IGDLIHLKYLGLRNSNIGIL---PSSIVKLQRLQTLDFSGDVGCPVELPIE 686 (919)
Q Consensus 611 ~~LrvL~L~~~~~~~~~~i~~~~~lp~~-i~~L~~Lr~L~L~~~~i~~L---P~~l~~L~~L~~L~L~~~~~~~~~lp~~ 686 (919)
+.|++|+|++ +. +. .+|.. +.++++|++|+|++|.++.+ |..+..+++|++|++++| .+..+|..
T Consensus 28 ~~l~~L~L~~-n~-----l~---~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n--~i~~l~~~ 96 (306)
T 2z66_A 28 SSATRLELES-NK-----LQ---SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN--GVITMSSN 96 (306)
T ss_dssp TTCCEEECCS-SC-----CC---CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC--SEEEEEEE
T ss_pred CCCCEEECCC-Cc-----cC---ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC--ccccChhh
Confidence 5789999999 87 77 67765 68899999999999988655 677888999999999999 78888887
Q ss_pred ccccccccccccccccccCCCCcCcCccccccccc--cc-chhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCC
Q 036584 687 INMMQELRHLIGNFKGTLPIENLTNLQTLKYVQSK--SW-NKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNL 763 (919)
Q Consensus 687 i~~L~~L~~L~~~~~~~~~i~~l~~L~~L~~~~~~--~~-~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L 763 (919)
+..+++|++|.. ..+. .. ....+..+++|+.|+++++... ... +..+..+++|
T Consensus 97 ~~~l~~L~~L~l-------------------~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~---~~~--~~~~~~l~~L 152 (306)
T 2z66_A 97 FLGLEQLEHLDF-------------------QHSNLKQMSEFSVFLSLRNLIYLDISHTHTR---VAF--NGIFNGLSSL 152 (306)
T ss_dssp EETCTTCCEEEC-------------------TTSEEESSTTTTTTTTCTTCCEEECTTSCCE---ECS--TTTTTTCTTC
T ss_pred cCCCCCCCEEEC-------------------CCCcccccccchhhhhccCCCEEECCCCcCC---ccc--hhhcccCcCC
Confidence 777777777732 1111 00 0123444555555555554311 111 1344555666
Q ss_pred cEEEEeecCCCCccC---cCCCCCCCCceeEEEceec-CC-CCcchhccCCCcceEEEEccCCCCCCchhhhcCCCCCeE
Q 036584 764 RFLSVKLLDANSFAS---LQPLSHCQCLVDLRLSGRM-KK-LPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIIL 838 (919)
Q Consensus 764 ~~L~l~~~~~~~~~~---~~~l~~~~~L~~L~L~~~~-~~-~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L 838 (919)
+.|++.+ +.+.. ...+..+++|++|++++|. .. .|.++..+ ++|++|+|++|.++......+..+++|+.|
T Consensus 153 ~~L~l~~---n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 228 (306)
T 2z66_A 153 EVLKMAG---NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL-SSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228 (306)
T ss_dssp CEEECTT---CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTSCCSBCCSGGGTTCTTCCEE
T ss_pred CEEECCC---CccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCC-CCCCEEECCCCccCccChhhccCcccCCEe
Confidence 6666532 22211 1224556666666666653 22 34455554 667777777766665555556666777777
Q ss_pred EEeeccccCeeEEEcCCCCc-ccceeEEecCCcc
Q 036584 839 DLHFRCHYVKKLGCRAEGFP-LLEILQLDADGLV 871 (919)
Q Consensus 839 ~L~~~~~~~~~~~~~~~~f~-~L~~L~l~~~~l~ 871 (919)
+|++|..... .+.....++ +|++|+++.|.++
T Consensus 229 ~L~~N~l~~~-~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 229 DYSLNHIMTS-KKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp ECTTSCCCBC-SSSSCCCCCTTCCEEECTTCCEE
T ss_pred ECCCCCCccc-CHHHHHhhhccCCEEEccCCCee
Confidence 7765443221 122233443 6666666654443
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.62 E-value=1.4e-15 Score=174.60 Aligned_cols=239 Identities=13% Similarity=0.084 Sum_probs=147.0
Q ss_pred hhhhhhccc----ccceEEeecCCCccccC-hhhhcCCCCcEEecCCCCCcccccCccccccccccccccccccccCCCC
Q 036584 634 RLSEKIGDL----IHLKYLGLRNSNIGILP-SSIVKLQRLQTLDFSGDVGCPVELPIEINMMQELRHLIGNFKGTLPIEN 708 (919)
Q Consensus 634 ~lp~~i~~L----~~Lr~L~L~~~~i~~LP-~~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~i~~ 708 (919)
.+|..+..+ ++|++|+|++|.++.+| ..++.+++|++|+|++| .+..+++ +..+++
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~-l~~l~~---------------- 81 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN--VLYETLD-LESLST---------------- 81 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS--CCEEEEE-CTTCTT----------------
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC--CCCCCcc-cccCCC----------------
Confidence 455555554 48999999999997775 58999999999999999 6655443 444444
Q ss_pred cCcCcccccccccccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCcC--CCCCCC
Q 036584 709 LTNLQTLKYVQSKSWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASLQ--PLSHCQ 786 (919)
Q Consensus 709 l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~l~~~~ 786 (919)
|+.|++..+. +..+...++|+.|+++++... ... ...+++|+.|++++ +.+..+. .+..++
T Consensus 82 ---L~~L~Ls~N~---l~~l~~~~~L~~L~L~~N~l~---~~~-----~~~l~~L~~L~L~~---N~l~~~~~~~~~~l~ 144 (487)
T 3oja_A 82 ---LRTLDLNNNY---VQELLVGPSIETLHAANNNIS---RVS-----CSRGQGKKNIYLAN---NKITMLRDLDEGCRS 144 (487)
T ss_dssp ---CCEEECCSSE---EEEEEECTTCCEEECCSSCCC---CEE-----ECCCSSCEEEECCS---SCCCSGGGBCGGGGS
T ss_pred ---CCEEEecCCc---CCCCCCCCCcCEEECcCCcCC---CCC-----ccccCCCCEEECCC---CCCCCCCchhhcCCC
Confidence 4444444332 111223367777777776522 111 12346777777743 3333322 245567
Q ss_pred CceeEEEceec-C-CCCcchhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccccCeeEEEcCCCCcccceeE
Q 036584 787 CLVDLRLSGRM-K-KLPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHYVKKLGCRAEGFPLLEILQ 864 (919)
Q Consensus 787 ~L~~L~L~~~~-~-~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~ 864 (919)
+|+.|+|++|. . ..|.++...+++|+.|+|++|.+++. +.+..+++|+.|+|++|.+. .++.....+++|+.|+
T Consensus 145 ~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~l~~L~~L~ 220 (487)
T 3oja_A 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLA--FMGPEFQSAAGVTWIS 220 (487)
T ss_dssp SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCC--EECGGGGGGTTCSEEE
T ss_pred CCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc--cccccCCCCCEEECCCCCCC--CCCHhHcCCCCccEEE
Confidence 77777777764 2 24545542237777777777777533 34445777777777755543 2333345667777777
Q ss_pred EecCCcccEEEccCCcccccceEEccccCcc-C-CcccccCCCCCCeeEec
Q 036584 865 LDADGLVEWQVEEGAMPVLRGLKIAAEIPKL-K-IPERLRSVPPPAEWECE 913 (919)
Q Consensus 865 l~~~~l~~~~~~~~~~p~L~~L~l~~nC~~l-~-lp~~l~~L~~L~~l~~~ 913 (919)
++.|.++.++.....+++|+.|++++ |+-. . +|..+..++.|+.+++.
T Consensus 221 Ls~N~l~~lp~~l~~l~~L~~L~l~~-N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 221 LRNNKLVLIEKALRFSQNLEHFDLRG-NGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CTTSCCCEECTTCCCCTTCCEEECTT-CCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred ecCCcCcccchhhccCCCCCEEEcCC-CCCcCcchHHHHHhCCCCcEEecc
Confidence 77777776655555677777777776 4433 1 66666666666655553
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.60 E-value=8.7e-16 Score=165.87 Aligned_cols=194 Identities=19% Similarity=0.130 Sum_probs=121.0
Q ss_pred ccccceEEeecCCCcc-ccChhh--hcCCCCcEEecCCCCCcccccCcccccc-----cccccccc---ccc--cccCCC
Q 036584 641 DLIHLKYLGLRNSNIG-ILPSSI--VKLQRLQTLDFSGDVGCPVELPIEINMM-----QELRHLIG---NFK--GTLPIE 707 (919)
Q Consensus 641 ~L~~Lr~L~L~~~~i~-~LP~~l--~~L~~L~~L~L~~~~~~~~~lp~~i~~L-----~~L~~L~~---~~~--~~~~i~ 707 (919)
++.+|++|+|++|.++ .+|..+ ..+++|++|++++| .+..+|..+..+ ++|++|.. ... .+..++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV--SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC--BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC--CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 5666666666666663 566554 66666666666666 555556555555 56666521 111 112366
Q ss_pred CcCcCccccccccccc----chhhc--cCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCc--
Q 036584 708 NLTNLQTLKYVQSKSW----NKVNT--AKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASL-- 779 (919)
Q Consensus 708 ~l~~L~~L~~~~~~~~----~~~~l--~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-- 779 (919)
.+++|++|++..+... .+..+ ..+++|+.|+++++......... ...+..+++|+.|++++ +.+...
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~~~~l~~L~~L~Ls~---N~l~~~~~ 245 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC--SALAAARVQLQGLDLSH---NSLRDAAG 245 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHH--HHHHHTTCCCSEEECTT---SCCCSSCC
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHH--HHHHhcCCCCCEEECCC---CcCCcccc
Confidence 7777777777766511 12233 77888888888887532111111 13345678899998843 444332
Q ss_pred -CCCCCCCCceeEEEceec-CCCCcchhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeecccc
Q 036584 780 -QPLSHCQCLVDLRLSGRM-KKLPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHY 846 (919)
Q Consensus 780 -~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~ 846 (919)
..+..+++|++|++++|. ..+|.++. ++|++|+|++|.+++. +.+..+++|+.|+|++|.+.
T Consensus 246 ~~~~~~l~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~~--p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 246 APSCDWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRN--PSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CSCCCCCTTCCEEECTTSCCSSCCSSCC---SEEEEEECCSSCCCSC--CCTTTSCEEEEEECTTCTTT
T ss_pred hhhhhhcCCCCEEECCCCccChhhhhcc---CCceEEECCCCCCCCC--hhHhhCCCCCEEeccCCCCC
Confidence 234456788888888874 56776654 7888888888888755 33788888888888866654
No 74
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.59 E-value=6.3e-15 Score=156.98 Aligned_cols=198 Identities=18% Similarity=0.142 Sum_probs=121.6
Q ss_pred CceEEEEEeccCccccccccccchhhh-hhhcccccceEEeecCCCcccc-ChhhhcCCCCcEEecCCCCCccccc-Ccc
Q 036584 610 FFLLRVFDVEADLDRESTLMHWSNRLS-EKIGDLIHLKYLGLRNSNIGIL-PSSIVKLQRLQTLDFSGDVGCPVEL-PIE 686 (919)
Q Consensus 610 ~~~LrvL~L~~~~~~~~~~i~~~~~lp-~~i~~L~~Lr~L~L~~~~i~~L-P~~l~~L~~L~~L~L~~~~~~~~~l-p~~ 686 (919)
.+.|++|+|++ +. +. .+| ..+..+++|++|+|++|.++.+ |..+..+++|++|++++| ..+..+ |..
T Consensus 31 ~~~l~~L~l~~-n~-----i~---~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~l~~~~~~~ 100 (285)
T 1ozn_A 31 PAASQRIFLHG-NR-----IS---HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN-AQLRSVDPAT 100 (285)
T ss_dssp CTTCSEEECTT-SC-----CC---EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC-TTCCCCCTTT
T ss_pred CCCceEEEeeC-Cc-----CC---ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC-CCccccCHHH
Confidence 35677777777 66 65 444 4577777777777777777655 556777777777777777 225555 334
Q ss_pred ccccccccccccccccccCCCCcCcCccccccccc--ccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCc
Q 036584 687 INMMQELRHLIGNFKGTLPIENLTNLQTLKYVQSK--SWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLR 764 (919)
Q Consensus 687 i~~L~~L~~L~~~~~~~~~i~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~ 764 (919)
+..+++ |++|++..+. ......+..+++|+.|+++++... ... . ..+..+++|+
T Consensus 101 ~~~l~~-------------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~-~-~~~~~l~~L~ 156 (285)
T 1ozn_A 101 FHGLGR-------------------LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ---ALP-D-DTFRDLGNLT 156 (285)
T ss_dssp TTTCTT-------------------CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC---CCC-T-TTTTTCTTCC
T ss_pred hcCCcC-------------------CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc---ccC-H-hHhccCCCcc
Confidence 444444 4444444333 122334566667777777766421 111 1 3466677777
Q ss_pred EEEEeecCCCCccCcCC--CCCCCCceeEEEceec-C-CCCcchhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEE
Q 036584 765 FLSVKLLDANSFASLQP--LSHCQCLVDLRLSGRM-K-KLPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDL 840 (919)
Q Consensus 765 ~L~l~~~~~~~~~~~~~--l~~~~~L~~L~L~~~~-~-~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L 840 (919)
.|++++ +.+..+.. +..+++|++|++++|. . ..|.++..+ ++|+.|+|++|.+++.++..+..+++|+.|+|
T Consensus 157 ~L~l~~---n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 232 (285)
T 1ozn_A 157 HLFLHG---NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL-GRLMTLYLFANNLSALPTEALAPLRALQYLRL 232 (285)
T ss_dssp EEECCS---SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCCSCCCHHHHTTCTTCCEEEC
T ss_pred EEECCC---CcccccCHHHhcCccccCEEECCCCcccccCHhHccCc-ccccEeeCCCCcCCcCCHHHcccCcccCEEec
Confidence 777743 33333322 5566777777777764 2 245566665 77888888888777655566777778888877
Q ss_pred eeccc
Q 036584 841 HFRCH 845 (919)
Q Consensus 841 ~~~~~ 845 (919)
++|.+
T Consensus 233 ~~N~~ 237 (285)
T 1ozn_A 233 NDNPW 237 (285)
T ss_dssp CSSCE
T ss_pred cCCCc
Confidence 76544
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.59 E-value=7e-15 Score=158.26 Aligned_cols=193 Identities=20% Similarity=0.265 Sum_probs=117.6
Q ss_pred ccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccChhhhcCCCCcEEecCCCCCcccccCccc
Q 036584 608 ERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVELPIEI 687 (919)
Q Consensus 608 ~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~~i 687 (919)
..++.|+.|++++ +. +. .+| .+..+++|++|+|++|.+..+|. +..+++|++|++++| .+..+| .+
T Consensus 38 ~~l~~L~~L~l~~-~~-----i~---~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n--~l~~~~-~~ 103 (308)
T 1h6u_A 38 ADLDGITTLSAFG-TG-----VT---TIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN--PLKNVS-AI 103 (308)
T ss_dssp HHHHTCCEEECTT-SC-----CC---CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC--CCSCCG-GG
T ss_pred HHcCCcCEEEeeC-CC-----cc---Cch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC--cCCCch-hh
Confidence 3456666666666 55 55 454 46666667777777666666665 666667777777666 454443 23
Q ss_pred cccccccccccccccccCCCCcCcCcccccccccccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEE
Q 036584 688 NMMQELRHLIGNFKGTLPIENLTNLQTLKYVQSKSWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLS 767 (919)
Q Consensus 688 ~~L~~L~~L~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 767 (919)
..++ +|+.|++..+.......+..+++|+.|+++++... . . ..+..+++|+.|+
T Consensus 104 ~~l~-------------------~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~---~-~---~~l~~l~~L~~L~ 157 (308)
T 1h6u_A 104 AGLQ-------------------SIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQIT---N-I---SPLAGLTNLQYLS 157 (308)
T ss_dssp TTCT-------------------TCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCC---C-C---GGGGGCTTCCEEE
T ss_pred cCCC-------------------CCCEEECCCCCCCCchhhcCCCCCCEEECCCCccC---c-C---ccccCCCCccEEE
Confidence 3333 33333333333222233556666777777666421 1 1 2266677778887
Q ss_pred EeecCCCCccCcCCCCCCCCceeEEEceec-CCCCcchhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeecccc
Q 036584 768 VKLLDANSFASLQPLSHCQCLVDLRLSGRM-KKLPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHY 846 (919)
Q Consensus 768 l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~ 846 (919)
+++ +.+..+..+..+++|+.|++++|. ..+|. +..+ ++|++|+|++|.+.+.. .+..+++|+.|+|++|.+.
T Consensus 158 l~~---n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 158 IGN---AQVSDLTPLANLSKLTTLKADDNKISDISP-LASL-PNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCS---SCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGC-TTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred ccC---CcCCCChhhcCCCCCCEEECCCCccCcChh-hcCC-CCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 743 334344446677788888888764 34443 5555 88888888888886443 4788888888888876654
Q ss_pred C
Q 036584 847 V 847 (919)
Q Consensus 847 ~ 847 (919)
.
T Consensus 231 ~ 231 (308)
T 1h6u_A 231 N 231 (308)
T ss_dssp C
T ss_pred c
Confidence 3
No 76
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.58 E-value=5.1e-17 Score=186.30 Aligned_cols=322 Identities=14% Similarity=0.016 Sum_probs=213.5
Q ss_pred CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccc--hhhhhhhcccccceEEeecCCCccc
Q 036584 580 NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWS--NRLSEKIGDLIHLKYLGLRNSNIGI 657 (919)
Q Consensus 580 ~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~--~~lp~~i~~L~~Lr~L~L~~~~i~~ 657 (919)
.++++.|.+.++. .........+..+++|++|+|++ |. +... ..++..+..+++|++|+|++|.++.
T Consensus 2 ~~~l~~L~Ls~~~-----l~~~~~~~~~~~~~~L~~L~L~~-~~-----l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 70 (461)
T 1z7x_W 2 SLDIQSLDIQCEE-----LSDARWAELLPLLQQCQVVRLDD-CG-----LTEARCKDISSALRVNPALAELNLRSNELGD 70 (461)
T ss_dssp CEEEEEEEEESCC-----CCHHHHHHHHHHHTTCSEEEEES-SC-----CCHHHHHHHHHHHHTCTTCCEEECTTCCCHH
T ss_pred Cccceehhhhhcc-----cCchhHHHHHhhcCCccEEEccC-CC-----CCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh
Confidence 3578999998872 22223455688899999999999 87 5521 1567788899999999999999954
Q ss_pred -cChhh-hcCC----CCcEEecCCCCCccc-----ccCcccccccccccccccccc-----ccC-----CCCcCcCcccc
Q 036584 658 -LPSSI-VKLQ----RLQTLDFSGDVGCPV-----ELPIEINMMQELRHLIGNFKG-----TLP-----IENLTNLQTLK 716 (919)
Q Consensus 658 -LP~~l-~~L~----~L~~L~L~~~~~~~~-----~lp~~i~~L~~L~~L~~~~~~-----~~~-----i~~l~~L~~L~ 716 (919)
.+..+ ..+. +|++|++++| .+. .+|..+..+++|++|...... +.. ....++|++|+
T Consensus 71 ~~~~~l~~~l~~~~~~L~~L~L~~n--~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 148 (461)
T 1z7x_W 71 VGVHCVLQGLQTPSCKIQKLSLQNC--CLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQ 148 (461)
T ss_dssp HHHHHHHHTTCSTTCCCCEEECTTS--CCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred HHHHHHHHHHhhCCCceeEEEccCC--CCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEE
Confidence 33333 3455 7999999999 565 568888999999999432111 111 23456899999
Q ss_pred ccccccc------chhhccCCCCCCeEEeeecCccccccccchhhHHh-hcCCCcEEEEeecCCCCcc--C-cCCCCCCC
Q 036584 717 YVQSKSW------NKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIA-KLKNLRFLSVKLLDANSFA--S-LQPLSHCQ 786 (919)
Q Consensus 717 ~~~~~~~------~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~--~-~~~l~~~~ 786 (919)
+..+... ....+..+++|+.|+++++......... ....+. ..++|+.|+++++...... . ...+..++
T Consensus 149 L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~-l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 227 (461)
T 1z7x_W 149 LEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRV-LCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA 227 (461)
T ss_dssp CTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH-HHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCT
T ss_pred CCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHH-HHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCC
Confidence 9888622 2445677899999999988632111100 001222 3569999999654322210 0 11245679
Q ss_pred CceeEEEceec-CC-----CCcchhccCCCcceEEEEccCCCCC----CchhhhcCCCCCeEEEeeccccCeeEE----E
Q 036584 787 CLVDLRLSGRM-KK-----LPEDMHVFLPNLECLSLSVPYPKED----PMPALEMLPNLIILDLHFRCHYVKKLG----C 852 (919)
Q Consensus 787 ~L~~L~L~~~~-~~-----~p~~~~~l~~~L~~L~L~~~~l~~~----~~~~l~~lp~L~~L~L~~~~~~~~~~~----~ 852 (919)
+|++|++++|. .. ++..+..-+++|++|+|++|.++.. .+..+..+++|+.|+|++|.+...... .
T Consensus 228 ~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 307 (461)
T 1z7x_W 228 SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET 307 (461)
T ss_dssp TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH
T ss_pred CccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHH
Confidence 99999999874 11 1122221138999999999998754 345677899999999997765332110 0
Q ss_pred cCCCCcccceeEEecCCcccE-----EEccCCcccccceEEccccCccC--Cc----ccccC-CCCCCeeEecccCC
Q 036584 853 RAEGFPLLEILQLDADGLVEW-----QVEEGAMPVLRGLKIAAEIPKLK--IP----ERLRS-VPPPAEWECEDSRN 917 (919)
Q Consensus 853 ~~~~f~~L~~L~l~~~~l~~~-----~~~~~~~p~L~~L~l~~nC~~l~--lp----~~l~~-L~~L~~l~~~~~~~ 917 (919)
.....++|++|+++.+.++.. +.....+++|++|++++ | .+. .+ ..+.. .++|+.+++++|..
T Consensus 308 l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 308 LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN-N-RLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382 (461)
T ss_dssp HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCS-S-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred hccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccC-C-ccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence 112347999999996666643 11123469999999998 5 565 22 33433 68999999998753
No 77
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.58 E-value=1.1e-15 Score=181.12 Aligned_cols=314 Identities=17% Similarity=0.100 Sum_probs=183.2
Q ss_pred CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCc----
Q 036584 580 NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNI---- 655 (919)
Q Consensus 580 ~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i---- 655 (919)
+++|++|.+.++... ......++..+.++++|++|+|++ +. +. .+|..+.++++|++|+++....
T Consensus 191 ~~~L~~L~L~~n~~~--~~~~~~l~~~~~~~~~L~~L~L~~-~~-----~~---~l~~~~~~~~~L~~L~l~~~~~~~~~ 259 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFA--KISPKDLETIARNCRSLVSVKVGD-FE-----IL---ELVGFFKAAANLEEFCGGSLNEDIGM 259 (592)
T ss_dssp CCCCCEEECTTCCCS--SCCHHHHHHHHHHCTTCCEEECSS-CB-----GG---GGHHHHHHCTTCCEEEECBCCCCTTC
T ss_pred CCCccEEEeeccCCC--ccCHHHHHHHHhhCCCCcEEeccC-cc-----HH---HHHHHHhhhhHHHhhcccccccccch
Confidence 455555555544110 001123344445556666666665 54 44 4555555566666666653211
Q ss_pred cccChhhhcCCCCcEEecCCCCCcccccCccccccccccccccccccc------cCCCCcCcCccccccccc-c-cchhh
Q 036584 656 GILPSSIVKLQRLQTLDFSGDVGCPVELPIEINMMQELRHLIGNFKGT------LPIENLTNLQTLKYVQSK-S-WNKVN 727 (919)
Q Consensus 656 ~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~L~~L~~~~~~~------~~i~~l~~L~~L~~~~~~-~-~~~~~ 727 (919)
...+..+..+++|+.|+++++ ....+|..+..+++|++|....... .-+..+++|++|.+..+- . .....
T Consensus 260 ~~~~~~l~~~~~L~~L~l~~~--~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~ 337 (592)
T 3ogk_B 260 PEKYMNLVFPRKLCRLGLSYM--GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVL 337 (592)
T ss_dssp TTSSSCCCCCTTCCEEEETTC--CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHH
T ss_pred HHHHHHhhccccccccCcccc--chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHH
Confidence 233344555566666666655 5566787788899999994322111 115789999999887332 1 12223
Q ss_pred ccCCCCCCeEEeee----------cCccccccccchhhHHhhcCCCcEEEEeecCCCCccCcCCCCC-CCCceeEEEcee
Q 036584 728 TAKLVNLRDLHIEE----------DEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASLQPLSH-CQCLVDLRLSGR 796 (919)
Q Consensus 728 l~~l~~L~~L~i~~----------~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~L~~~ 796 (919)
...+++|+.|.+.+ +... ..... ......+++|++|.+.+..... ..+..+.. +++|++|+++++
T Consensus 338 ~~~~~~L~~L~L~~g~~~~~~~~~~~~~-~~~~~--~~l~~~~~~L~~L~l~~~~l~~-~~~~~l~~~~~~L~~L~l~~~ 413 (592)
T 3ogk_B 338 AQYCKQLKRLRIERGADEQGMEDEEGLV-SQRGL--IALAQGCQELEYMAVYVSDITN-ESLESIGTYLKNLCDFRLVLL 413 (592)
T ss_dssp HHHCTTCCEEEEECCCCSSTTSSTTCCC-CHHHH--HHHHHHCTTCSEEEEEESCCCH-HHHHHHHHHCCSCCEEEEEEC
T ss_pred HHhCCCCCEEEeecCccccccccccCcc-CHHHH--HHHHhhCccCeEEEeecCCccH-HHHHHHHhhCCCCcEEEEeec
Confidence 46688999999994 3211 11111 1335568999999995432211 12222333 789999999742
Q ss_pred -----cCCCCc------chhccCCCcceEEEEccC--CCCCCchhhh-cCCCCCeEEEeeccccCeeEEEcCCCCcccce
Q 036584 797 -----MKKLPE------DMHVFLPNLECLSLSVPY--PKEDPMPALE-MLPNLIILDLHFRCHYVKKLGCRAEGFPLLEI 862 (919)
Q Consensus 797 -----~~~~p~------~~~~l~~~L~~L~L~~~~--l~~~~~~~l~-~lp~L~~L~L~~~~~~~~~~~~~~~~f~~L~~ 862 (919)
....|. .+.. +++|++|+|++|. ++...+..++ .+|+|+.|+|++|......+.....++++|++
T Consensus 414 ~~~n~l~~~p~~~~~~~~~~~-~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~ 492 (592)
T 3ogk_B 414 DREERITDLPLDNGVRSLLIG-CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQK 492 (592)
T ss_dssp SCCSCCSSCCCHHHHHHHHHH-CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCE
T ss_pred CCCccccCchHHHHHHHHHHh-CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCe
Confidence 233221 1333 4999999998654 5555555555 49999999999666544333333467899999
Q ss_pred eEEecCCcccE--EEccCCcccccceEEccccCccC---CcccccCCCCCCeeEec
Q 036584 863 LQLDADGLVEW--QVEEGAMPVLRGLKIAAEIPKLK---IPERLRSVPPPAEWECE 913 (919)
Q Consensus 863 L~l~~~~l~~~--~~~~~~~p~L~~L~l~~nC~~l~---lp~~l~~L~~L~~l~~~ 913 (919)
|+|+.+.++.. +.....+|+|+.|++++ |+ ++ +..-...++.|....+.
T Consensus 493 L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~-n~-it~~~~~~l~~~~p~l~~~~~~ 546 (592)
T 3ogk_B 493 LEMRGCCFSERAIAAAVTKLPSLRYLWVQG-YR-ASMTGQDLMQMARPYWNIELIP 546 (592)
T ss_dssp EEEESCCCBHHHHHHHHHHCSSCCEEEEES-CB-CCTTCTTGGGGCCTTEEEEEEC
T ss_pred eeccCCCCcHHHHHHHHHhcCccCeeECcC-Cc-CCHHHHHHHHHhCCCcEEEEec
Confidence 99995556532 21224689999999999 76 65 22223345555554443
No 78
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.58 E-value=2.5e-16 Score=186.80 Aligned_cols=340 Identities=15% Similarity=0.038 Sum_probs=177.3
Q ss_pred CCeeEEEEecCCCCcccccc---CCCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccc--h
Q 036584 559 SSCRRQAIYSHSPSYFWLHH---GNSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWS--N 633 (919)
Q Consensus 559 ~~~r~l~l~~~~~~~~~~~~---~~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~--~ 633 (919)
..+++|.+..+......... .+++|++|.+.++. ......++..+.++++|++|+|++ |. +... .
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~----~~~~~~l~~~~~~~~~L~~L~L~~-~~-----i~~~~~~ 174 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE----GFSTDGLAAIAATCRNLKELDLRE-SD-----VDDVSGH 174 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE----EEEHHHHHHHHHHCTTCCEEECTT-CE-----EECCCGG
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC----CCCHHHHHHHHHhCCCCCEEeCcC-Cc-----cCCcchH
Confidence 35667777644333221111 26778888887761 111112455556777788888877 65 3310 0
Q ss_pred hhhhhhcccccceEEeecCCC--c--cccChhhhcCCCCcEEecCCCCCcccccCccccccccccccccc----------
Q 036584 634 RLSEKIGDLIHLKYLGLRNSN--I--GILPSSIVKLQRLQTLDFSGDVGCPVELPIEINMMQELRHLIGN---------- 699 (919)
Q Consensus 634 ~lp~~i~~L~~Lr~L~L~~~~--i--~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~L~~L~~~---------- 699 (919)
.++.....+++|++|+|++|. + ..++.-+..+++|++|++++| ..+..+|..+..+++|++|...
T Consensus 175 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 253 (594)
T 2p1m_B 175 WLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA-VPLEKLATLLQRAPQLEELGTGGYTAEVRPDV 253 (594)
T ss_dssp GGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT-SCHHHHHHHHHHCTTCSEEECSBCCCCCCHHH
T ss_pred HHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC-CcHHHHHHHHhcCCcceEcccccccCccchhh
Confidence 122223356677777777765 2 223333455677777777776 3444556555566666665310
Q ss_pred ---------------------cc----cccCCCCcCcCccccccccccc---chhhccCCCCCCeEEeeecCcccccccc
Q 036584 700 ---------------------FK----GTLPIENLTNLQTLKYVQSKSW---NKVNTAKLVNLRDLHIEEDEDEWEGETV 751 (919)
Q Consensus 700 ---------------------~~----~~~~i~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~i~~~~~~~~~~~~ 751 (919)
.. .+.-+..+++|++|++..+... ....+..+++|+.|.+.++. .....
T Consensus 254 ~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~---~~~~l 330 (594)
T 2p1m_B 254 YSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI---EDAGL 330 (594)
T ss_dssp HHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGG---HHHHH
T ss_pred HHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCcc---CHHHH
Confidence 00 0000124566777776666511 11224567778888777651 11111
Q ss_pred chhhHHhhcCCCcEEEEeec------CCCCccC--cCCC-CCCCCceeEEEceec-C-CCCcchhccCCCcceEEEE--c
Q 036584 752 FSFESIAKLKNLRFLSVKLL------DANSFAS--LQPL-SHCQCLVDLRLSGRM-K-KLPEDMHVFLPNLECLSLS--V 818 (919)
Q Consensus 752 ~~~~~l~~l~~L~~L~l~~~------~~~~~~~--~~~l-~~~~~L~~L~L~~~~-~-~~p~~~~~l~~~L~~L~L~--~ 818 (919)
. .....+++|+.|.+..+ ..+.+.. +..+ ..+++|++|.+.++. . ..+..+...+++|+.|+|+ +
T Consensus 331 -~-~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~ 408 (594)
T 2p1m_B 331 -E-VLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIE 408 (594)
T ss_dssp -H-HHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESS
T ss_pred -H-HHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeeccc
Confidence 1 22345677888877542 1111111 1111 236777777665432 1 1122232223778888887 3
Q ss_pred ----cCCCCCCc-----hhhhcCCCCCeEEEeeccccCeeEEEcCCCCcccceeEEecCCcccEEEc--cCCcccccceE
Q 036584 819 ----PYPKEDPM-----PALEMLPNLIILDLHFRCHYVKKLGCRAEGFPLLEILQLDADGLVEWQVE--EGAMPVLRGLK 887 (919)
Q Consensus 819 ----~~l~~~~~-----~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~l~~~~l~~~~~~--~~~~p~L~~L~ 887 (919)
+.++..+. ..+..+++|+.|+|++ ......+..-...+++|+.|+++++.++..... ...+|+|++|+
T Consensus 409 ~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~ 487 (594)
T 2p1m_B 409 PKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLE 487 (594)
T ss_dssp TTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEE
T ss_pred CCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEE
Confidence 34442221 1245677788887763 322221111111367788888885555432111 13478888888
Q ss_pred EccccCccC---CcccccCCCCCCeeEecccCC
Q 036584 888 IAAEIPKLK---IPERLRSVPPPAEWECEDSRN 917 (919)
Q Consensus 888 l~~nC~~l~---lp~~l~~L~~L~~l~~~~~~~ 917 (919)
+++ |+. + ++..+..+++|+.+++++|+.
T Consensus 488 L~~-n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 488 IRD-CPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp EES-CSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred CcC-CCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 887 654 4 334455677888888877753
No 79
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.56 E-value=6.6e-16 Score=166.82 Aligned_cols=173 Identities=18% Similarity=0.120 Sum_probs=102.2
Q ss_pred cCCCCCCeEEeeecCccccccccchhhHHhhc-----CCCcEEEEeecCCCCccCcC--CCCCCCCceeEEEceec-C-C
Q 036584 729 AKLVNLRDLHIEEDEDEWEGETVFSFESIAKL-----KNLRFLSVKLLDANSFASLQ--PLSHCQCLVDLRLSGRM-K-K 799 (919)
Q Consensus 729 ~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~--~l~~~~~L~~L~L~~~~-~-~ 799 (919)
..+++|+.|+++++... ... ..+..+ ++|+.|+++++. +..+. .+..+++|++|++++|. . .
T Consensus 118 ~~l~~L~~L~Ls~N~l~---~~~---~~~~~l~~~~~~~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 188 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWA---TRD---AWLAELQQWLKPGLKVLSIAQAH---SLNFSCEQVRVFPALSTLDLSDNPELGE 188 (312)
T ss_dssp CCSCCCSEEEEESCBCS---SSS---SHHHHHHTTCCTTCCEEEEESCS---CCCCCTTTCCCCSSCCEEECCSCTTCHH
T ss_pred hcCCCccEEEccCCCCc---chh---HHHHHHHHhhcCCCcEEEeeCCC---CccchHHHhccCCCCCEEECCCCCcCcc
Confidence 44556666666665422 111 233333 677777775432 32222 35667777777777764 1 1
Q ss_pred --CCcch--hccCCCcceEEEEccCCCCC--Cc-hhhhcCCCCCeEEEeeccccCeeEEEcCCCCcccceeEEecCCccc
Q 036584 800 --LPEDM--HVFLPNLECLSLSVPYPKED--PM-PALEMLPNLIILDLHFRCHYVKKLGCRAEGFPLLEILQLDADGLVE 872 (919)
Q Consensus 800 --~p~~~--~~l~~~L~~L~L~~~~l~~~--~~-~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~l~~~~l~~ 872 (919)
+|..+ ..+ ++|++|+|++|.++.. .+ ..+..+++|+.|+|++|.+...........+++|++|+++.|.++.
T Consensus 189 ~~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 267 (312)
T 1wwl_A 189 RGLISALCPLKF-PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267 (312)
T ss_dssp HHHHHHSCTTSC-TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS
T ss_pred hHHHHHHHhccC-CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh
Confidence 23233 344 7788888888877521 11 2234677888888876655442211122346778888888777776
Q ss_pred EEEccCCcccccceEEccccCccC-CcccccCCCCCCeeEecccC
Q 036584 873 WQVEEGAMPVLRGLKIAAEIPKLK-IPERLRSVPPPAEWECEDSR 916 (919)
Q Consensus 873 ~~~~~~~~p~L~~L~l~~nC~~l~-lp~~l~~L~~L~~l~~~~~~ 916 (919)
++... +++|+.|++++ ++++ +|. +..+++|+.+++++++
T Consensus 268 ip~~~--~~~L~~L~Ls~--N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 268 VPKGL--PAKLSVLDLSY--NRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCSSC--CSEEEEEECCS--SCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred hhhhc--cCCceEEECCC--CCCCCChh-HhhCCCCCEEeccCCC
Confidence 64332 27888888876 5677 766 7778888888887754
No 80
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.53 E-value=1e-14 Score=155.43 Aligned_cols=216 Identities=16% Similarity=0.124 Sum_probs=148.9
Q ss_pred EEEEecCCCCccccccCCCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhh-hhhhcc
Q 036584 563 RQAIYSHSPSYFWLHHGNSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRL-SEKIGD 641 (919)
Q Consensus 563 ~l~l~~~~~~~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~l-p~~i~~ 641 (919)
.+.........++ ....++++.|.+.++. .....+..|..+++|++|+|++ +. +. .+ |..+..
T Consensus 15 ~~~c~~~~l~~ip-~~~~~~l~~L~l~~n~------i~~~~~~~~~~~~~L~~L~l~~-n~-----l~---~~~~~~~~~ 78 (285)
T 1ozn_A 15 TTSCPQQGLQAVP-VGIPAASQRIFLHGNR------ISHVPAASFRACRNLTILWLHS-NV-----LA---RIDAAAFTG 78 (285)
T ss_dssp EEECCSSCCSSCC-TTCCTTCSEEECTTSC------CCEECTTTTTTCTTCCEEECCS-SC-----CC---EECTTTTTT
T ss_pred EEEcCcCCcccCC-cCCCCCceEEEeeCCc------CCccCHHHcccCCCCCEEECCC-Cc-----cc---eeCHhhcCC
Confidence 4444433344443 2236789999998882 2334556789999999999999 77 76 44 778999
Q ss_pred cccceEEeecCCC-cccc-ChhhhcCCCCcEEecCCCCCcccccC-ccccccccccccccccccccCCCCcCcCcccccc
Q 036584 642 LIHLKYLGLRNSN-IGIL-PSSIVKLQRLQTLDFSGDVGCPVELP-IEINMMQELRHLIGNFKGTLPIENLTNLQTLKYV 718 (919)
Q Consensus 642 L~~Lr~L~L~~~~-i~~L-P~~l~~L~~L~~L~L~~~~~~~~~lp-~~i~~L~~L~~L~~~~~~~~~i~~l~~L~~L~~~ 718 (919)
+++|++|+|++|. ++.+ |..+..+++|++|++++| .+..++ ..+..+++|++| ++.
T Consensus 79 l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L-------------------~l~ 137 (285)
T 1ozn_A 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC--GLQELGPGLFRGLAALQYL-------------------YLQ 137 (285)
T ss_dssp CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS--CCCCCCTTTTTTCTTCCEE-------------------ECC
T ss_pred ccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCC--cCCEECHhHhhCCcCCCEE-------------------ECC
Confidence 9999999999997 8777 668999999999999999 666664 345555555555 333
Q ss_pred ccc--ccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCc--CCCCCCCCceeEEEc
Q 036584 719 QSK--SWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASL--QPLSHCQCLVDLRLS 794 (919)
Q Consensus 719 ~~~--~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~~~~L~~L~L~ 794 (919)
.+. ......+..+++|+.|+++++... ... . ..+..+++|+.|++.++ .+..+ ..+..+++|+.|+++
T Consensus 138 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~-~-~~~~~l~~L~~L~l~~n---~l~~~~~~~~~~l~~L~~L~l~ 209 (285)
T 1ozn_A 138 DNALQALPDDTFRDLGNLTHLFLHGNRIS---SVP-E-RAFRGLHSLDRLLLHQN---RVAHVHPHAFRDLGRLMTLYLF 209 (285)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC---EEC-T-TTTTTCTTCCEEECCSS---CCCEECTTTTTTCTTCCEEECC
T ss_pred CCcccccCHhHhccCCCccEEECCCCccc---ccC-H-HHhcCccccCEEECCCC---cccccCHhHccCcccccEeeCC
Confidence 333 112233566777888888776422 222 1 45677888888888543 33332 336678889999998
Q ss_pred eec-CCCCc-chhccCCCcceEEEEccCCCCC
Q 036584 795 GRM-KKLPE-DMHVFLPNLECLSLSVPYPKED 824 (919)
Q Consensus 795 ~~~-~~~p~-~~~~l~~~L~~L~L~~~~l~~~ 824 (919)
+|. ..+|. .+..+ ++|+.|+|++|.+..+
T Consensus 210 ~n~l~~~~~~~~~~l-~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 210 ANNLSALPTEALAPL-RALQYLRLNDNPWVCD 240 (285)
T ss_dssp SSCCSCCCHHHHTTC-TTCCEEECCSSCEECS
T ss_pred CCcCCcCCHHHcccC-cccCEEeccCCCccCC
Confidence 874 44553 45555 8999999999987643
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.53 E-value=3.3e-14 Score=151.40 Aligned_cols=126 Identities=22% Similarity=0.110 Sum_probs=85.4
Q ss_pred hcCCCcEEEEeecCCCCccCcCC-CCCCCCceeEEEceec-CCCC-cchhccCCCcceEEEEccCCCCCCchhhhcCCCC
Q 036584 759 KLKNLRFLSVKLLDANSFASLQP-LSHCQCLVDLRLSGRM-KKLP-EDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNL 835 (919)
Q Consensus 759 ~l~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~L~~~~-~~~p-~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L 835 (919)
.+++|+.|++++ +.+..++. +..+++|+.|++++|. ..+| ..+..+ ++|++|+|++|.++..++..+..+++|
T Consensus 75 ~l~~L~~L~Ls~---N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L 150 (290)
T 1p9a_G 75 TLPVLGTLDLSH---NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYLKGNELKTLPPGLLTPTPKL 150 (290)
T ss_dssp CCTTCCEEECCS---SCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTC-TTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCCcCCEEECCC---CcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCC-CCCCEEECCCCCCCccChhhcccccCC
Confidence 345666666643 23322322 5567888888888874 4454 345555 888888888888876666667788888
Q ss_pred CeEEEeeccccCeeEEE-cCCCCcccceeEEecCCcccEEEccCCcccccceEEcc
Q 036584 836 IILDLHFRCHYVKKLGC-RAEGFPLLEILQLDADGLVEWQVEEGAMPVLRGLKIAA 890 (919)
Q Consensus 836 ~~L~L~~~~~~~~~~~~-~~~~f~~L~~L~l~~~~l~~~~~~~~~~p~L~~L~l~~ 890 (919)
+.|+|++|.+. .++. ....+++|+.|+|+.|.++.++.....+++|+.|.+++
T Consensus 151 ~~L~L~~N~l~--~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 151 EKLSLANNNLT--ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG 204 (290)
T ss_dssp CEEECTTSCCS--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCS
T ss_pred CEEECCCCcCC--ccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCC
Confidence 88888866543 2222 23457788888888777887766666677888888876
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.52 E-value=4.9e-14 Score=151.59 Aligned_cols=197 Identities=19% Similarity=0.218 Sum_probs=150.1
Q ss_pred hhcccccceEEeecCCCccccChhhhcCCCCcEEecCCCCCcccccCccccccccccccccccccccCCCCcCcCccccc
Q 036584 638 KIGDLIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVELPIEINMMQELRHLIGNFKGTLPIENLTNLQTLKY 717 (919)
Q Consensus 638 ~i~~L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~i~~l~~L~~L~~ 717 (919)
...++.+|++|++++|.+..+| .+..+++|++|++++| .+..+|. +..+++|++| ++
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n--~i~~~~~-~~~l~~L~~L-------------------~L 92 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDN--QITDLAP-LKNLTKITEL-------------------EL 92 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS--CCCCCGG-GTTCCSCCEE-------------------EC
T ss_pred cHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCC--cCCCChh-HccCCCCCEE-------------------Ec
Confidence 3567899999999999999998 6999999999999999 7777776 6555555555 44
Q ss_pred ccccccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCcCCCCCCCCceeEEEceec
Q 036584 718 VQSKSWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASLQPLSHCQCLVDLRLSGRM 797 (919)
Q Consensus 718 ~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 797 (919)
..+.......+..+++|+.|+++++... . . ..+..+++|+.|++++ +.+..+..+..+++|+.|++++|.
T Consensus 93 ~~n~l~~~~~~~~l~~L~~L~l~~n~l~---~-~---~~l~~l~~L~~L~l~~---n~l~~~~~l~~l~~L~~L~l~~n~ 162 (308)
T 1h6u_A 93 SGNPLKNVSAIAGLQSIKTLDLTSTQIT---D-V---TPLAGLSNLQVLYLDL---NQITNISPLAGLTNLQYLSIGNAQ 162 (308)
T ss_dssp CSCCCSCCGGGTTCTTCCEEECTTSCCC---C-C---GGGTTCTTCCEEECCS---SCCCCCGGGGGCTTCCEEECCSSC
T ss_pred cCCcCCCchhhcCCCCCCEEECCCCCCC---C-c---hhhcCCCCCCEEECCC---CccCcCccccCCCCccEEEccCCc
Confidence 4443222345788899999999988632 1 2 3478899999999954 445455557788999999999985
Q ss_pred -CCCCcchhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccccCeeEEEcCCCCcccceeEEecCCcccEE
Q 036584 798 -KKLPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHYVKKLGCRAEGFPLLEILQLDADGLVEWQ 874 (919)
Q Consensus 798 -~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~l~~~~l~~~~ 874 (919)
..++. +..+ ++|+.|+|++|.+.... .+..+++|+.|+|++|...... ....+++|+.|+++.|.++..+
T Consensus 163 l~~~~~-l~~l-~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 163 VSDLTP-LANL-SKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp CCCCGG-GTTC-TTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCCBCG---GGTTCTTCCEEEEEEEEEECCC
T ss_pred CCCChh-hcCC-CCCCEEECCCCccCcCh--hhcCCCCCCEEEccCCccCccc---cccCCCCCCEEEccCCeeecCC
Confidence 44554 6666 99999999999987433 4899999999999977654332 3577899999999966666543
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.52 E-value=2.7e-14 Score=151.34 Aligned_cols=178 Identities=20% Similarity=0.210 Sum_probs=80.7
Q ss_pred hhcccccceEEeecCCCccccCh-hhhcCCCCcEEecCCCCCcccccCc-cccccccccccccc---cc--cccCCCCcC
Q 036584 638 KIGDLIHLKYLGLRNSNIGILPS-SIVKLQRLQTLDFSGDVGCPVELPI-EINMMQELRHLIGN---FK--GTLPIENLT 710 (919)
Q Consensus 638 ~i~~L~~Lr~L~L~~~~i~~LP~-~l~~L~~L~~L~L~~~~~~~~~lp~-~i~~L~~L~~L~~~---~~--~~~~i~~l~ 710 (919)
.+.++++|++|+|++|.++.+|. .+..+++|++|++++| .+..++. .+..+++|++|... .. .+..++.++
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 124 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN--PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC--CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCT
T ss_pred HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC--ccCccChhhhcCCccccEEECCCCCccccCchhcccCC
Confidence 45555555555555555544443 4555555555555555 4444332 33334444443210 00 011134444
Q ss_pred cCccccccccccc---chhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCcCCCCCCCC
Q 036584 711 NLQTLKYVQSKSW---NKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASLQPLSHCQC 787 (919)
Q Consensus 711 ~L~~L~~~~~~~~---~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~ 787 (919)
+|++|++..+... .+..+..+++|+.|+++++... ... . ..+..+++|+ .
T Consensus 125 ~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~---~~~-~-~~~~~l~~L~----------------------~ 177 (276)
T 2z62_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ---SIY-C-TDLRVLHQMP----------------------L 177 (276)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC---EEC-G-GGGHHHHTCT----------------------T
T ss_pred CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC---cCC-H-HHhhhhhhcc----------------------c
Confidence 4444444444311 1334455555555555554321 110 0 2222222232 1
Q ss_pred ce-eEEEceec-CCCCcchhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccc
Q 036584 788 LV-DLRLSGRM-KKLPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCH 845 (919)
Q Consensus 788 L~-~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~ 845 (919)
|. +|++++|. ..+|...... .+|+.|+|++|.++..+...++.+++|+.|+|++|.+
T Consensus 178 l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 178 LNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp CCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred cceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 11 44444442 2333333333 4667777777766655545556677777777765543
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.51 E-value=8.9e-14 Score=146.66 Aligned_cols=192 Identities=23% Similarity=0.319 Sum_probs=97.0
Q ss_pred EEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccCh-hhhcCCCCcEEecCCCCCcccccCccc-ccc
Q 036584 613 LRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILPS-SIVKLQRLQTLDFSGDVGCPVELPIEI-NMM 690 (919)
Q Consensus 613 LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~-~l~~L~~L~~L~L~~~~~~~~~lp~~i-~~L 690 (919)
++.+++++ +. +. .+|..+. .+|++|+|++|.++.+|. .+..+++|++|++++| .+..+|..+ ..+
T Consensus 18 ~~~l~~~~-~~-----l~---~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~i~~~~~~~l 84 (270)
T 2o6q_A 18 KNSVDCSS-KK-----LT---AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN--KLQTLPAGIFKEL 84 (270)
T ss_dssp TTEEECTT-SC-----CS---SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS--CCSCCCTTTTSSC
T ss_pred CCEEEccC-CC-----CC---ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC--ccCeeChhhhcCC
Confidence 34455555 44 44 4444333 345555555555555443 4555555555555555 444444432 223
Q ss_pred ccccccccccccccCCCCcCcCccccccccc--ccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEE
Q 036584 691 QELRHLIGNFKGTLPIENLTNLQTLKYVQSK--SWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSV 768 (919)
Q Consensus 691 ~~L~~L~~~~~~~~~i~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 768 (919)
++|++| ++..+. ......+..+++|+.|.++++... ... +..+..+++|+.|++
T Consensus 85 ~~L~~L-------------------~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~--~~~~~~l~~L~~L~L 140 (270)
T 2o6q_A 85 KNLETL-------------------WVTDNKLQALPIGVFDQLVNLAELRLDRNQLK---SLP--PRVFDSLTKLTYLSL 140 (270)
T ss_dssp TTCCEE-------------------ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCC---CCC--TTTTTTCTTCCEEEC
T ss_pred CCCCEE-------------------ECCCCcCCcCCHhHcccccCCCEEECCCCccC---eeC--HHHhCcCcCCCEEEC
Confidence 333333 222111 011122334455555555554311 111 134556667777776
Q ss_pred eecCCCCccCcCC--CCCCCCceeEEEceec-CCCCcc-hhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeecc
Q 036584 769 KLLDANSFASLQP--LSHCQCLVDLRLSGRM-KKLPED-MHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRC 844 (919)
Q Consensus 769 ~~~~~~~~~~~~~--l~~~~~L~~L~L~~~~-~~~p~~-~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~ 844 (919)
+++ .+..+.. +..+++|++|++++|. ..+|.. +..+ ++|++|+|++|.++..+...+..+++|+.|+|++|.
T Consensus 141 s~n---~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 141 GYN---ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL-TELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CSS---CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCC---cCCccCHhHccCCcccceeEecCCcCcEeChhHhccC-CCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 432 3322222 4556677777776653 344433 4444 777777777777765555556777777777777554
Q ss_pred c
Q 036584 845 H 845 (919)
Q Consensus 845 ~ 845 (919)
+
T Consensus 217 ~ 217 (270)
T 2o6q_A 217 W 217 (270)
T ss_dssp B
T ss_pred e
Confidence 3
No 85
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.51 E-value=3.9e-13 Score=149.83 Aligned_cols=294 Identities=10% Similarity=-0.000 Sum_probs=182.4
Q ss_pred CCccccccCHHHHHHHHhc--CCCCcEEEEEEecCCchHHHHHHHHHcccCcc----CC--CCEEEEEEeCCCC-CHHHH
Q 036584 203 ENPVGFEDDTDLLLAKLLD--KEQRRLVISIYGMGGLGKTTLARKLYHNNDVK----NK--FDYCAWVSVSQDY-KIKDL 273 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~----~~--f~~~~wv~~~~~~-~~~~~ 273 (919)
..++||+++++.+..++.. .....+.+.|+|++|+||||||+.+++..... .. ....+|+++.... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 6799999999999988865 23345689999999999999999999842111 11 3457888887766 88888
Q ss_pred HHHHHHHhcccccccccccCCHHHHHHHHHHHhccCceEEEEecccchhH---HHHHHhhCCCCCCCcEEEEEecchhhh
Q 036584 274 LLRIIKSFNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHKED---WVSLKSAFPENKIGSRVIITTRIKDVA 350 (919)
Q Consensus 274 ~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~---~~~l~~~l~~~~~gs~iivTtr~~~v~ 350 (919)
+..++.++.+... .........+...+.+.+..++.+|||||++.... .+.+...+.....+..+|+||+.....
T Consensus 100 ~~~l~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~ 177 (384)
T 2qby_B 100 LSSLAGKLTGFSV--PKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVR 177 (384)
T ss_dssp HHHHHHHHHCSCC--CSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTT
T ss_pred HHHHHHHhcCCCC--CCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchH
Confidence 8898888854221 12233446677788888877666999999986532 222022222211578889998865321
Q ss_pred hhcC-----CCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcC---Ccch-HHHHHHHHh--c---CC
Q 036584 351 ERSD-----DRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCD---GLPL-AIVVLGGLL--S---TK 416 (919)
Q Consensus 351 ~~~~-----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~---G~PL-al~~~~~~l--~---~~ 416 (919)
.... .....+.+++++.++..+++..++........-..+....|++.++ |.|. |+..+-... . ..
T Consensus 178 ~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~ 257 (384)
T 2qby_B 178 DYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGI 257 (384)
T ss_dssp TTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSC
T ss_pred hhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCc
Confidence 1110 1114899999999999999998753211111111345566777777 9887 433333322 1 22
Q ss_pred -ChHHHHHHHHHHHHhhcCCchhhHHHHHhccccchHHHHHHHhHhcCCCCCceecHHHHHHHHHHcCCcccCCCCCHHH
Q 036584 417 -RPQEWREVRNHIWRHLRNDSIQVSYLLDLSFNDLSHQLKLCFLYLSLFPEDFVINVEKLIRLLVAEGFIRQDEDRTMEE 495 (919)
Q Consensus 417 -~~~~w~~~~~~~~~~l~~~~~~i~~~l~~sy~~L~~~~k~c~~~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~e~ 495 (919)
+.+.+..++..... ..+..+++.|+++.+..+..++....+-.+. +......-..| + ......
T Consensus 258 i~~~~v~~~~~~~~~----------~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~----~~~~~~ 321 (384)
T 2qby_B 258 IRKEHVDKAIVDYEQ----------ERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-Q----KPLSYR 321 (384)
T ss_dssp CCHHHHHHHHHHHHH----------HHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-C----CCCCHH
T ss_pred cCHHHHHHHHHHHhc----------chHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-C----CCCCHH
Confidence 56667666654321 3355677889988888877777611101111 11111111222 1 122345
Q ss_pred HHHHHHHHHHHcccccccc
Q 036584 496 VAKDILDELINRSLIQVEK 514 (919)
Q Consensus 496 ~~~~~l~~L~~~sll~~~~ 514 (919)
...+++..|...|++....
T Consensus 322 ~~~~~l~~L~~~gli~~~~ 340 (384)
T 2qby_B 322 RFSDIISELDMFGIVKIRI 340 (384)
T ss_dssp HHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEe
Confidence 6778999999999998754
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.49 E-value=5.9e-14 Score=148.17 Aligned_cols=104 Identities=24% Similarity=0.213 Sum_probs=62.8
Q ss_pred hHHhhcCCCcEEEEeecCCCCccCcCC--CCCCCCceeEEEceec-CCCCcc-hhccCCCcceEEEEccCCCCCCchhhh
Q 036584 755 ESIAKLKNLRFLSVKLLDANSFASLQP--LSHCQCLVDLRLSGRM-KKLPED-MHVFLPNLECLSLSVPYPKEDPMPALE 830 (919)
Q Consensus 755 ~~l~~l~~L~~L~l~~~~~~~~~~~~~--l~~~~~L~~L~L~~~~-~~~p~~-~~~l~~~L~~L~L~~~~l~~~~~~~l~ 830 (919)
..+..+++|+.|++.++ .+..+.+ +..+++|+.|++++|. ..+|.. +..+ ++|+.|+|++|.+.+.++..++
T Consensus 127 ~~~~~l~~L~~L~L~~n---~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~ 202 (272)
T 3rfs_A 127 GVFDKLTNLTYLNLAHN---QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL-TQLKDLRLYQNQLKSVPDGVFD 202 (272)
T ss_dssp TTTTTCTTCCEEECCSS---CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTT
T ss_pred HHhccCCCCCEEECCCC---ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCC-ccCCEEECCCCcCCccCHHHHh
Confidence 34566777888887443 3333333 4566777777777763 334433 3444 7777777777777665555667
Q ss_pred cCCCCCeEEEeeccccCeeEEEcCCCCcccceeEEecCCc
Q 036584 831 MLPNLIILDLHFRCHYVKKLGCRAEGFPLLEILQLDADGL 870 (919)
Q Consensus 831 ~lp~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~l~~~~l 870 (919)
.+++|+.|+|++|.+. +.+|+|+.|.++.+.+
T Consensus 203 ~l~~L~~L~l~~N~~~--------~~~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 203 RLTSLQYIWLHDNPWD--------CTCPGIRYLSEWINKH 234 (272)
T ss_dssp TCTTCCEEECCSSCBC--------CCTTTTHHHHHHHHHT
T ss_pred CCcCCCEEEccCCCcc--------ccCcHHHHHHHHHHhC
Confidence 7777777777755432 2355666666663333
No 87
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.49 E-value=7e-13 Score=147.88 Aligned_cols=296 Identities=14% Similarity=0.066 Sum_probs=184.3
Q ss_pred CCCCccccccCHHHHHHHHhcC--CCCcEEEEEEecCCchHHHHHHHHHcccCcc----CCCCEEEEEEeCCCCCHHHHH
Q 036584 201 VEENPVGFEDDTDLLLAKLLDK--EQRRLVISIYGMGGLGKTTLARKLYHNNDVK----NKFDYCAWVSVSQDYKIKDLL 274 (919)
Q Consensus 201 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~ 274 (919)
.+..++||+++++.+..++... ....+.+.|+|++|+||||||+.+++..... +.-...+|+++....+...++
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 3478999999999999998653 3346689999999999999999999742111 112346788888888888999
Q ss_pred HHHHHHhcccccccccccCCHHHHHHHHHHHh--ccCceEEEEecccchhH----HHHH---HhhCCCC--CCCcEEEEE
Q 036584 275 LRIIKSFNIMTALEDLETKTEEDLARSLRKSL--EAYSYLMVIDDIWHKED----WVSL---KSAFPEN--KIGSRVIIT 343 (919)
Q Consensus 275 ~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~~----~~~l---~~~l~~~--~~gs~iivT 343 (919)
..++.+++... .....+...+...+.+.+ .+++.+|||||++.... .+.+ ....... ..+..+|.|
T Consensus 97 ~~l~~~l~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~ 173 (387)
T 2v1u_A 97 SAIAEAVGVRV---PFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGI 173 (387)
T ss_dssp HHHHHHHSCCC---CSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEE
T ss_pred HHHHHHhCCCC---CCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEE
Confidence 99999886532 122344566777777777 35688999999986532 1222 2222211 345677888
Q ss_pred ecchhhhhhc------CCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcC---CcchHH-HHHHHHh
Q 036584 344 TRIKDVAERS------DDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCD---GLPLAI-VVLGGLL 413 (919)
Q Consensus 344 tr~~~v~~~~------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~---G~PLal-~~~~~~l 413 (919)
|+..+..... ......+.+++++.++..+++...+........-..+....|++.++ |.|..+ ..+..+.
T Consensus 174 t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 174 TNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp CSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 8765321111 11114789999999999999998753210011111234566777777 999433 3322222
Q ss_pred ---c----CC-ChHHHHHHHHHHHHhhcCCchhhHHHHHhccccchHHHHHHHhHhc-CCCCCceecHHHHHHHHH----
Q 036584 414 ---S----TK-RPQEWREVRNHIWRHLRNDSIQVSYLLDLSFNDLSHQLKLCFLYLS-LFPEDFVINVEKLIRLLV---- 480 (919)
Q Consensus 414 ---~----~~-~~~~w~~~~~~~~~~l~~~~~~i~~~l~~sy~~L~~~~k~c~~~~s-~fp~~~~i~~~~li~~w~---- 480 (919)
. .. +.+.+..++..... ..+.-++..||++.+..+..++ ++.....+....+.+...
T Consensus 254 ~~a~~~~~~~i~~~~v~~a~~~~~~----------~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (387)
T 2v1u_A 254 EIAERRREERVRREHVYSARAEIER----------DRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTS 323 (387)
T ss_dssp HHHHHTTCSCBCHHHHHHHHHHHHH----------HHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHhh----------chHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 1 12 45566655544321 2345567889988887776666 443223455564444432
Q ss_pred HcCCcccCCCCCHHHHHHHHHHHHHHcccccccc
Q 036584 481 AEGFIRQDEDRTMEEVAKDILDELINRSLIQVEK 514 (919)
Q Consensus 481 aeg~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~ 514 (919)
..| . .......+.++++.|...|+++...
T Consensus 324 ~~~-~----~~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 324 TLG-L----EHVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HTT-C----CCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred hcC-C----CCCCHHHHHHHHHHHHhCCCeEEEe
Confidence 122 1 1223456788999999999998754
No 88
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.47 E-value=1.8e-13 Score=144.95 Aligned_cols=202 Identities=23% Similarity=0.221 Sum_probs=142.1
Q ss_pred hhhhhhcccccceEEeecCCCccccCh-hhhcCCCCcEEecCCCCCcccccCccccccccccccccccccccCCCCcCcC
Q 036584 634 RLSEKIGDLIHLKYLGLRNSNIGILPS-SIVKLQRLQTLDFSGDVGCPVELPIEINMMQELRHLIGNFKGTLPIENLTNL 712 (919)
Q Consensus 634 ~lp~~i~~L~~Lr~L~L~~~~i~~LP~-~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~i~~l~~L 712 (919)
.+|..+. ++|++|+|++|.++.+|. .+.++++|++|++++| .+..+|..
T Consensus 21 ~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~-------------------------- 70 (276)
T 2z62_A 21 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC--EIQTIEDG-------------------------- 70 (276)
T ss_dssp SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC--CCCEECTT--------------------------
T ss_pred ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCC--cCCccCHH--------------------------
Confidence 5776554 579999999999988776 7889999999999998 66555541
Q ss_pred cccccccccccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCcC--CCCCCCCcee
Q 036584 713 QTLKYVQSKSWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASLQ--PLSHCQCLVD 790 (919)
Q Consensus 713 ~~L~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~l~~~~~L~~ 790 (919)
.+..+++|+.|+++++.. .... +..+..+++|+.|.+.++ .+..+. .+..+++|++
T Consensus 71 --------------~~~~l~~L~~L~L~~n~l---~~~~--~~~~~~l~~L~~L~l~~n---~l~~~~~~~~~~l~~L~~ 128 (276)
T 2z62_A 71 --------------AYQSLSHLSTLILTGNPI---QSLA--LGAFSGLSSLQKLVAVET---NLASLENFPIGHLKTLKE 128 (276)
T ss_dssp --------------TTTTCTTCCEEECTTCCC---CEEC--TTTTTTCTTCCEEECTTS---CCCCSTTCCCTTCTTCCE
T ss_pred --------------HccCCcCCCEEECCCCcc---CccC--hhhhcCCccccEEECCCC---CccccCchhcccCCCCCE
Confidence 112233444444444431 1111 155778899999998543 333333 3777899999
Q ss_pred EEEceec-C--CCCcchhccCCCcceEEEEccCCCCCCchhhhcCCCCC----eEEEeeccccCeeEEEcCCCCccccee
Q 036584 791 LRLSGRM-K--KLPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLI----ILDLHFRCHYVKKLGCRAEGFPLLEIL 863 (919)
Q Consensus 791 L~L~~~~-~--~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~----~L~L~~~~~~~~~~~~~~~~f~~L~~L 863 (919)
|++++|. . .+|.++..+ ++|++|+|++|.++...+..+..+++|+ .|++++|... .+........+|+.|
T Consensus 129 L~l~~n~l~~~~l~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~--~~~~~~~~~~~L~~L 205 (276)
T 2z62_A 129 LNVAHNLIQSFKLPEYFSNL-TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN--FIQPGAFKEIRLKEL 205 (276)
T ss_dssp EECCSSCCCCCCCCGGGGGC-TTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCC--EECTTSSCSCCEEEE
T ss_pred EECcCCccceecCchhhccC-CCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCccc--ccCccccCCCcccEE
Confidence 9999875 3 368888887 9999999999999876667777777776 7888866543 233333344589999
Q ss_pred EEecCCcccEEEcc-CCcccccceEEcc
Q 036584 864 QLDADGLVEWQVEE-GAMPVLRGLKIAA 890 (919)
Q Consensus 864 ~l~~~~l~~~~~~~-~~~p~L~~L~l~~ 890 (919)
+++.|.++.++... ..+++|+.|++++
T Consensus 206 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 206 ALDTNQLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp ECCSSCCSCCCTTTTTTCCSCCEEECCS
T ss_pred ECCCCceeecCHhHhcccccccEEEccC
Confidence 99988888776443 5689999999996
No 89
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.47 E-value=4.3e-12 Score=141.61 Aligned_cols=319 Identities=16% Similarity=0.127 Sum_probs=197.6
Q ss_pred CCCccccccCHHHHHHHHhcC----CCCcEEEEEEecCCchHHHHHHHHHcccCccCC-CCEEEEEEeCCCCCHHHHHHH
Q 036584 202 EENPVGFEDDTDLLLAKLLDK----EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNK-FDYCAWVSVSQDYKIKDLLLR 276 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~ 276 (919)
++.++||+++++.+..++... ....+.+.|+|++|+||||||+.+++. .... -..++|++++...+...++..
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 367999999999999998762 222348999999999999999999984 3222 134778888888888899999
Q ss_pred HHHHhcccccccccccCCHHHHHHHHHHHhc--cCceEEEEecccch--hHHHHHHhhCCCCC----CCcEEEEEecchh
Q 036584 277 IIKSFNIMTALEDLETKTEEDLARSLRKSLE--AYSYLMVIDDIWHK--EDWVSLKSAFPENK----IGSRVIITTRIKD 348 (919)
Q Consensus 277 il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~--~~~~~l~~~l~~~~----~gs~iivTtr~~~ 348 (919)
++..++.... ........+...+.+.+. +++.+||||+++.. +....+...+.... .+..||++|+...
T Consensus 94 l~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 94 IARSLNIPFP---RRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp HHHHTTCCCC---SSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred HHHHhCccCC---CCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 9888864321 123345667777777664 56889999999764 44555655554321 4677888887664
Q ss_pred hhhhcCC------CCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHc---------CCcchHHHHHHHHh
Q 036584 349 VAERSDD------RNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKC---------DGLPLAIVVLGGLL 413 (919)
Q Consensus 349 v~~~~~~------~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~---------~G~PLal~~~~~~l 413 (919)
....... ....+.+++++.++..+++...+........-..+....|++.+ +|.|..+..+....
T Consensus 171 ~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 171 VLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp HHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 4332211 11369999999999999998876431111112245677888888 78876554443322
Q ss_pred c------CC---ChHHHHHHHHHHHHhhcCCchhhHHHHHhccccchHHHHHHHhHhcCCC---CCceecHHHHHHHHHH
Q 036584 414 S------TK---RPQEWREVRNHIWRHLRNDSIQVSYLLDLSFNDLSHQLKLCFLYLSLFP---EDFVINVEKLIRLLVA 481 (919)
Q Consensus 414 ~------~~---~~~~w~~~~~~~~~~l~~~~~~i~~~l~~sy~~L~~~~k~c~~~~s~fp---~~~~i~~~~li~~w~a 481 (919)
. .. +.+....+.... . ...+.-.+..||++.+.++..++.+. .+..+....+...+..
T Consensus 251 ~~~a~~~~~~~i~~~~v~~~~~~~---~-------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~ 320 (389)
T 1fnn_A 251 AYAAQQNGRKHIAPEDVRKSSKEV---L-------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKI 320 (389)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHH---S-------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHH---h-------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHH
Confidence 1 11 222222222211 1 11233345778888888887777653 2214666676665533
Q ss_pred ----cCCcccCCCCCHHHHHHHHHHHHHHccccccccc--CC---CceeEEE----ecHHHHHHHHHHhhhc
Q 036584 482 ----EGFIRQDEDRTMEEVAKDILDELINRSLIQVEKR--CW---GRISTCR----VHDLLRDLAIQKAKEL 540 (919)
Q Consensus 482 ----eg~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~~--~~---~~~~~~~----~H~lv~~~~~~~~~~e 540 (919)
.|.. .-......+++.+|...++|..... .. |+...++ .|+++..+...+..+|
T Consensus 321 ~~~~~~~~-----~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 321 VCEEYGER-----PRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp HHHHTTCC-----CCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCC-----CCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 2211 1123457789999999999987542 12 2222333 3466666655554443
No 90
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.46 E-value=4.4e-15 Score=176.08 Aligned_cols=272 Identities=15% Similarity=0.112 Sum_probs=143.2
Q ss_pred ccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCC-------CccccChhhhcCCCCcEE-ecCCCCCc
Q 036584 608 ERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNS-------NIGILPSSIVKLQRLQTL-DFSGDVGC 679 (919)
Q Consensus 608 ~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~-------~i~~LP~~l~~L~~L~~L-~L~~~~~~ 679 (919)
..+++|++|+|++ |.. +. .+|..+..+++|++|++.++ .+..++..+.++++|+.| .+.+. .
T Consensus 208 ~~~~~L~~L~L~~-~~~----~~---~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~--~ 277 (594)
T 2p1m_B 208 TRCPNLKSLKLNR-AVP----LE---KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA--V 277 (594)
T ss_dssp HHCTTCCEEECCT-TSC----HH---HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC--C
T ss_pred HhCCCCcEEecCC-CCc----HH---HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCccc--c
Confidence 3445555555555 320 32 34444455555555553322 223344444445555554 33332 3
Q ss_pred ccccCcccccccccccccccccccc------CCCCcCcCcccccccccc-cchhh-ccCCCCCCeEEeeecC------cc
Q 036584 680 PVELPIEINMMQELRHLIGNFKGTL------PIENLTNLQTLKYVQSKS-WNKVN-TAKLVNLRDLHIEEDE------DE 745 (919)
Q Consensus 680 ~~~lp~~i~~L~~L~~L~~~~~~~~------~i~~l~~L~~L~~~~~~~-~~~~~-l~~l~~L~~L~i~~~~------~~ 745 (919)
...+|..+..+++|++|........ -+..+++|++|.+..+-. ..... ...+++|+.|.+..+. ..
T Consensus 278 ~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~ 357 (594)
T 2p1m_B 278 PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNV 357 (594)
T ss_dssp GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSS
T ss_pred hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCC
Confidence 3445555556778888743211111 145788888888776631 11222 2357888888885421 00
Q ss_pred ccccccchhhHHhhcCCCcEEEEeecCCCCccCcCCC-CCCCCceeEEEc--e-----ecCCCCc--c----hhccCCCc
Q 036584 746 WEGETVFSFESIAKLKNLRFLSVKLLDANSFASLQPL-SHCQCLVDLRLS--G-----RMKKLPE--D----MHVFLPNL 811 (919)
Q Consensus 746 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~L~--~-----~~~~~p~--~----~~~l~~~L 811 (919)
...... .......+++|+.|.+.+...... .+..+ ..+++|+.|+++ + +....|. . +.. +++|
T Consensus 358 ~l~~~~-l~~l~~~~~~L~~L~~~~~~l~~~-~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~-~~~L 434 (594)
T 2p1m_B 358 ALTEQG-LVSVSMGCPKLESVLYFCRQMTNA-ALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH-CKDL 434 (594)
T ss_dssp CCCHHH-HHHHHHHCTTCCEEEEEESCCCHH-HHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHH-CTTC
T ss_pred CCCHHH-HHHHHHhchhHHHHHHhcCCcCHH-HHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhh-CCCc
Confidence 011111 102223478888886643322111 11222 246788888888 2 1222221 1 223 4888
Q ss_pred ceEEEEccCCCCCCchhhhc-CCCCCeEEEeeccccCeeEEEcCCCCcccceeEEecCCcccEEE--ccCCcccccceEE
Q 036584 812 ECLSLSVPYPKEDPMPALEM-LPNLIILDLHFRCHYVKKLGCRAEGFPLLEILQLDADGLVEWQV--EEGAMPVLRGLKI 888 (919)
Q Consensus 812 ~~L~L~~~~l~~~~~~~l~~-lp~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~l~~~~l~~~~~--~~~~~p~L~~L~l 888 (919)
++|+|++ .++...+..++. +++|+.|+|++|......+..-..++++|+.|+|+.+.++.... ....+|+|+.|++
T Consensus 435 ~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l 513 (594)
T 2p1m_B 435 RRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWM 513 (594)
T ss_dssp CEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEE
T ss_pred cEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEee
Confidence 8888876 565555566665 88888888886654333222212457888888888555543322 2235788888888
Q ss_pred ccccCc
Q 036584 889 AAEIPK 894 (919)
Q Consensus 889 ~~nC~~ 894 (919)
++ |+.
T Consensus 514 ~~-~~~ 518 (594)
T 2p1m_B 514 SS-CSV 518 (594)
T ss_dssp ES-SCC
T ss_pred eC-CCC
Confidence 88 765
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.46 E-value=4e-15 Score=162.74 Aligned_cols=110 Identities=22% Similarity=0.175 Sum_probs=55.5
Q ss_pred CceeEEEceec-----CCCCcchhccCCCcceEEEEccC-CCCCCchhhhcCCCCCeEEEeeccccCeeEEEcCCCCccc
Q 036584 787 CLVDLRLSGRM-----KKLPEDMHVFLPNLECLSLSVPY-PKEDPMPALEMLPNLIILDLHFRCHYVKKLGCRAEGFPLL 860 (919)
Q Consensus 787 ~L~~L~L~~~~-----~~~p~~~~~l~~~L~~L~L~~~~-l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~f~~L 860 (919)
+|++|++++|. ..+|..+..+ ++|++|+|++|. ++...+..++.+++|+.|+|++|.............+++|
T Consensus 196 ~L~~L~l~~~~~~~~~~~l~~~~~~~-~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L 274 (336)
T 2ast_B 196 TITQLNLSGYRKNLQKSDLSTLVRRC-PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL 274 (336)
T ss_dssp TCCEEECCSCGGGSCHHHHHHHHHHC-TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred CCCEEEeCCCcccCCHHHHHHHHhhC-CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCC
Confidence 55555555442 1233344444 677777777776 5545556666777777777764431111101123456677
Q ss_pred ceeEEecCCcccEEEccCCc-ccccceEEccccCccC--Cccccc
Q 036584 861 EILQLDADGLVEWQVEEGAM-PVLRGLKIAAEIPKLK--IPERLR 902 (919)
Q Consensus 861 ~~L~l~~~~l~~~~~~~~~~-p~L~~L~l~~nC~~l~--lp~~l~ 902 (919)
+.|+++.+ ++... ...+ ..|..|+++ |+.++ .|..+.
T Consensus 275 ~~L~l~~~-i~~~~--~~~l~~~l~~L~l~--~n~l~~~~~~~~~ 314 (336)
T 2ast_B 275 KTLQVFGI-VPDGT--LQLLKEALPHLQIN--CSHFTTIARPTIG 314 (336)
T ss_dssp CEEECTTS-SCTTC--HHHHHHHSTTSEES--CCCSCCTTCSSCS
T ss_pred CEEeccCc-cCHHH--HHHHHhhCcceEEe--cccCccccCCccc
Confidence 77777632 22111 0112 346666675 46666 554443
No 92
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.45 E-value=4.3e-13 Score=142.71 Aligned_cols=61 Identities=21% Similarity=0.035 Sum_probs=29.8
Q ss_pred CCCCCceeEEEceec-CCCCcchhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeecc
Q 036584 783 SHCQCLVDLRLSGRM-KKLPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRC 844 (919)
Q Consensus 783 ~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~ 844 (919)
..+++|+.|++++|. ..+|..+..-+++|+.|+|++|.++ ..+..+..+++|+.|+|.+|.
T Consensus 145 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 145 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred ccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCC
Confidence 344555555555542 3344333221255555566555554 334444555555555555443
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.44 E-value=2.4e-15 Score=167.78 Aligned_cols=241 Identities=18% Similarity=0.126 Sum_probs=127.7
Q ss_pred cchhhhccCceEEEEEeccCccccccccccc--hhhhhhhcccccceEEeecCCCcc----ccChhh-------hcCCCC
Q 036584 602 HLPLLFERFFLLRVFDVEADLDRESTLMHWS--NRLSEKIGDLIHLKYLGLRNSNIG----ILPSSI-------VKLQRL 668 (919)
Q Consensus 602 ~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~--~~lp~~i~~L~~Lr~L~L~~~~i~----~LP~~l-------~~L~~L 668 (919)
.+...+..+++|++|+|++ |. +... ..++..+..+++|++|+|++|.+. .+|..+ ..+++|
T Consensus 23 ~l~~~l~~~~~L~~L~L~~-n~-----i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L 96 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSG-NT-----IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKL 96 (386)
T ss_dssp TTSHHHHHCSCCCEEECTT-SE-----ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHhcCCCccEEECCC-CC-----CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcc
Confidence 4455667778888888888 66 5420 024445667888888888886543 445444 677888
Q ss_pred cEEecCCCCCcccc-----cCccccccccccccccccccccCCCCcCcCccccccccccc------chhhccCC------
Q 036584 669 QTLDFSGDVGCPVE-----LPIEINMMQELRHLIGNFKGTLPIENLTNLQTLKYVQSKSW------NKVNTAKL------ 731 (919)
Q Consensus 669 ~~L~L~~~~~~~~~-----lp~~i~~L~~L~~L~~~~~~~~~i~~l~~L~~L~~~~~~~~------~~~~l~~l------ 731 (919)
++|+|++| .+.. +|..+ ..+++|++|++..|... ....+..+
T Consensus 97 ~~L~Ls~n--~l~~~~~~~l~~~l-------------------~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~ 155 (386)
T 2ca6_A 97 HTVRLSDN--AFGPTAQEPLIDFL-------------------SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKA 155 (386)
T ss_dssp CEEECCSC--CCCTTTHHHHHHHH-------------------HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEECCCC--cCCHHHHHHHHHHH-------------------HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhc
Confidence 88888887 4433 33332 34445556655555411 11123333
Q ss_pred ---CCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCcc---CcC-CCCCCCCceeEEEceec------C
Q 036584 732 ---VNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFA---SLQ-PLSHCQCLVDLRLSGRM------K 798 (919)
Q Consensus 732 ---~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~~~-~l~~~~~L~~L~L~~~~------~ 798 (919)
++|+.|.++++.... .........+..+++|+.|+++++...... ... .+..+++|+.|+|++|. .
T Consensus 156 ~~~~~L~~L~L~~n~l~~-~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~ 234 (386)
T 2ca6_A 156 KNAPPLRSIICGRNRLEN-GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS 234 (386)
T ss_dssp HTCCCCCEEECCSSCCTG-GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH
T ss_pred ccCCCCcEEECCCCCCCc-HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHH
Confidence 677777777765320 111100134556677777777443221000 111 34556666777766653 1
Q ss_pred CCCcchhccCCCcceEEEEccCCCCC----Cchhh--hcCCCCCeEEEeeccccCe---eEEEcC-CCCcccceeEEecC
Q 036584 799 KLPEDMHVFLPNLECLSLSVPYPKED----PMPAL--EMLPNLIILDLHFRCHYVK---KLGCRA-EGFPLLEILQLDAD 868 (919)
Q Consensus 799 ~~p~~~~~l~~~L~~L~L~~~~l~~~----~~~~l--~~lp~L~~L~L~~~~~~~~---~~~~~~-~~f~~L~~L~l~~~ 868 (919)
.+|.++..+ ++|++|+|++|.++.. .+..+ +.+++|+.|+|++|.+... .++... ..+++|++|+++.|
T Consensus 235 ~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 235 ALAIALKSW-PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp HHHHHGGGC-TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred HHHHHHccC-CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 244445554 6666777766666533 12333 2266666666665443321 111111 23466666666644
Q ss_pred Ccc
Q 036584 869 GLV 871 (919)
Q Consensus 869 ~l~ 871 (919)
.++
T Consensus 314 ~l~ 316 (386)
T 2ca6_A 314 RFS 316 (386)
T ss_dssp BSC
T ss_pred cCC
Confidence 444
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.44 E-value=2.2e-13 Score=146.77 Aligned_cols=198 Identities=17% Similarity=0.151 Sum_probs=122.7
Q ss_pred CceEEEEEeccCccccccccccchhhhhhh--cccccceEEeecCCCccc-cC----hhhhcCCCCcEEecCCCCCcccc
Q 036584 610 FFLLRVFDVEADLDRESTLMHWSNRLSEKI--GDLIHLKYLGLRNSNIGI-LP----SSIVKLQRLQTLDFSGDVGCPVE 682 (919)
Q Consensus 610 ~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i--~~L~~Lr~L~L~~~~i~~-LP----~~l~~L~~L~~L~L~~~~~~~~~ 682 (919)
++.|+.|+|++ +. +.. ..|..+ +.+++|++|+|++|.++. .| ..+..+++|++|++++| .+..
T Consensus 90 ~~~L~~L~l~~-n~-----l~~--~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n--~l~~ 159 (310)
T 4glp_A 90 YSRLKELTLED-LK-----ITG--TMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA--HSPA 159 (310)
T ss_dssp HSCCCEEEEES-CC-----CBS--CCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC--SSCC
T ss_pred cCceeEEEeeC-CE-----ecc--chhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC--Ccch
Confidence 35588888887 66 542 556666 777888888888887743 22 23456778888888877 5555
Q ss_pred cCc-cccccccccccccccccccCCCCcCcCcccccccccccc------hhhccCCCCCCeEEeeecCccccccccchhh
Q 036584 683 LPI-EINMMQELRHLIGNFKGTLPIENLTNLQTLKYVQSKSWN------KVNTAKLVNLRDLHIEEDEDEWEGETVFSFE 755 (919)
Q Consensus 683 lp~-~i~~L~~L~~L~~~~~~~~~i~~l~~L~~L~~~~~~~~~------~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~ 755 (919)
+|. .+..+++ |++|++..+.... ...+..+++|+.|.++++......... ..
T Consensus 160 ~~~~~~~~l~~-------------------L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~--~~ 218 (310)
T 4glp_A 160 FSCEQVRAFPA-------------------LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVC--AA 218 (310)
T ss_dssp CCTTSCCCCTT-------------------CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHH--HH
T ss_pred hhHHHhccCCC-------------------CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHH--HH
Confidence 543 3444444 4444444443110 111346677777777776532111111 02
Q ss_pred HHhhcCCCcEEEEeecCCCCccCcC--CCCC---CCCceeEEEceec-CCCCcchhccCCCcceEEEEccCCCCCCchhh
Q 036584 756 SIAKLKNLRFLSVKLLDANSFASLQ--PLSH---CQCLVDLRLSGRM-KKLPEDMHVFLPNLECLSLSVPYPKEDPMPAL 829 (919)
Q Consensus 756 ~l~~l~~L~~L~l~~~~~~~~~~~~--~l~~---~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l 829 (919)
.+..+++|+.|++++ |.+.... .+.. +++|++|++++|. ..+|.++ +++|+.|+|++|.+++. +.+
T Consensus 219 l~~~l~~L~~L~Ls~---N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~---~~~L~~L~Ls~N~l~~~--~~~ 290 (310)
T 4glp_A 219 LAAAGVQPHSLDLSH---NSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL---PAKLRVLDLSSNRLNRA--PQP 290 (310)
T ss_dssp HHHHTCCCSSEECTT---SCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC---CSCCSCEECCSCCCCSC--CCT
T ss_pred HHhcCCCCCEEECCC---CCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh---cCCCCEEECCCCcCCCC--chh
Confidence 346778899999854 4443331 1233 4789999998874 5677665 27899999999988753 336
Q ss_pred hcCCCCCeEEEeecccc
Q 036584 830 EMLPNLIILDLHFRCHY 846 (919)
Q Consensus 830 ~~lp~L~~L~L~~~~~~ 846 (919)
..+|+|+.|+|++|.+.
T Consensus 291 ~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 291 DELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TSCCCCSCEECSSTTTS
T ss_pred hhCCCccEEECcCCCCC
Confidence 78889999998877654
No 95
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.44 E-value=1.3e-13 Score=142.52 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=17.1
Q ss_pred cceEEeecCCCccccCh-hhhcCCCCcEEecCCC
Q 036584 644 HLKYLGLRNSNIGILPS-SIVKLQRLQTLDFSGD 676 (919)
Q Consensus 644 ~Lr~L~L~~~~i~~LP~-~l~~L~~L~~L~L~~~ 676 (919)
+|++|+|++|.|+.+|. .+..+++|++|++++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 65 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSID 65 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECC
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCC
Confidence 45555555555544444 3455555555555555
No 96
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.43 E-value=1.2e-12 Score=145.91 Aligned_cols=294 Identities=16% Similarity=0.122 Sum_probs=178.5
Q ss_pred CCCCccccccCHHHHHHHHhcC--CCCcEEEEEEecCCchHHHHHHHHHcccCccCC---CCEEEEEEeCCCCCHHHHHH
Q 036584 201 VEENPVGFEDDTDLLLAKLLDK--EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNK---FDYCAWVSVSQDYKIKDLLL 275 (919)
Q Consensus 201 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~---f~~~~wv~~~~~~~~~~~~~ 275 (919)
.+..++||+++++.+.+++... ......+.|+|++|+||||||+.+++. .... -..++|+++....+...++.
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~ 95 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVLA 95 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHHH
Confidence 4478999999999999998753 334668999999999999999999984 2222 23477888777677778888
Q ss_pred HHHHHhcccccccccccCCHHHHHHHHHHHhc--cCceEEEEecccchh------HHHHHHhhCCC-CCCCcEEEEEecc
Q 036584 276 RIIKSFNIMTALEDLETKTEEDLARSLRKSLE--AYSYLMVIDDIWHKE------DWVSLKSAFPE-NKIGSRVIITTRI 346 (919)
Q Consensus 276 ~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~------~~~~l~~~l~~-~~~gs~iivTtr~ 346 (919)
.++.+++.... ....+..++...+.+.+. +++.+||||+++... .+..+...+.. ...+..+|+||+.
T Consensus 96 ~i~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~ 172 (386)
T 2qby_A 96 DLLESLDVKVP---FTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND 172 (386)
T ss_dssp HHTTTTSCCCC---SSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred HHHHHhCCCCC---CCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence 88777754221 123345666677777664 458999999997532 23334333311 2335667888876
Q ss_pred hhhhhhcCC------CCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcC---CcchHHHHHHH-Hhc--
Q 036584 347 KDVAERSDD------RNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCD---GLPLAIVVLGG-LLS-- 414 (919)
Q Consensus 347 ~~v~~~~~~------~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~---G~PLal~~~~~-~l~-- 414 (919)
......... ....+.+++++.++..+++...+........-..++...|++.++ |.|..+..+.. ...
T Consensus 173 ~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 173 VKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIA 252 (386)
T ss_dssp GGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 643322211 114799999999999999988653211111122345566777776 99984433322 211
Q ss_pred ---C--C-ChHHHHHHHHHHHHhhcCCchhhHHHHHhccccchHHHHHHHhHhcCCCC-C-ceecHHHHHHHHH--Hc--
Q 036584 415 ---T--K-RPQEWREVRNHIWRHLRNDSIQVSYLLDLSFNDLSHQLKLCFLYLSLFPE-D-FVINVEKLIRLLV--AE-- 482 (919)
Q Consensus 415 ---~--~-~~~~w~~~~~~~~~~l~~~~~~i~~~l~~sy~~L~~~~k~c~~~~s~fp~-~-~~i~~~~li~~w~--ae-- 482 (919)
. . +.+.+..+..... ...+.-.+..+|+..+..+..++..-+ + ..+....+..... ++
T Consensus 253 ~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~ 322 (386)
T 2qby_A 253 ERMKDTKVKEEYVYMAKEEIE----------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKL 322 (386)
T ss_dssp HHTTCSSCCHHHHHHHHHHHH----------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHH
T ss_pred HhcCCCccCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhc
Confidence 1 2 4555555544332 123555677888888877776663211 1 2244444433221 11
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHcccccccc
Q 036584 483 GFIRQDEDRTMEEVAKDILDELINRSLIQVEK 514 (919)
Q Consensus 483 g~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~ 514 (919)
|. ..........+++.|...+++....
T Consensus 323 g~-----~~~~~~~~~~~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 323 GV-----EAVTQRRVSDIINELDMVGILTAKV 349 (386)
T ss_dssp TC-----CCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred CC-----CCCCHHHHHHHHHHHHhCCCEEEEe
Confidence 21 1112345678999999999997643
No 97
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.42 E-value=2.3e-13 Score=143.69 Aligned_cols=86 Identities=20% Similarity=0.238 Sum_probs=49.3
Q ss_pred CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccC
Q 036584 580 NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILP 659 (919)
Q Consensus 580 ~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP 659 (919)
+++++.|.+.++. . ..++ .+..+++|++|+|++ +. +. .++ .++.+++|++|+|++|.++.+|
T Consensus 40 l~~L~~L~l~~~~-----i--~~~~-~l~~l~~L~~L~l~~-n~-----l~---~~~-~l~~l~~L~~L~L~~n~l~~~~ 101 (272)
T 3rfs_A 40 LNSIDQIIANNSD-----I--KSVQ-GIQYLPNVRYLALGG-NK-----LH---DIS-ALKELTNLTYLILTGNQLQSLP 101 (272)
T ss_dssp HTTCCEEECTTSC-----C--CCCT-TGGGCTTCCEEECTT-SC-----CC---CCG-GGTTCTTCCEEECTTSCCCCCC
T ss_pred ccceeeeeeCCCC-----c--cccc-ccccCCCCcEEECCC-CC-----CC---Cch-hhcCCCCCCEEECCCCccCccC
Confidence 4556666665551 1 1111 245566666666666 55 54 332 5666666666666666665555
Q ss_pred hh-hhcCCCCcEEecCCCCCcccccCc
Q 036584 660 SS-IVKLQRLQTLDFSGDVGCPVELPI 685 (919)
Q Consensus 660 ~~-l~~L~~L~~L~L~~~~~~~~~lp~ 685 (919)
.. +..+++|++|++++| .+..+|.
T Consensus 102 ~~~~~~l~~L~~L~L~~n--~l~~~~~ 126 (272)
T 3rfs_A 102 NGVFDKLTNLKELVLVEN--QLQSLPD 126 (272)
T ss_dssp TTTTTTCTTCCEEECTTS--CCCCCCT
T ss_pred hhHhcCCcCCCEEECCCC--cCCccCH
Confidence 43 466666666666666 4555444
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.42 E-value=3.9e-13 Score=143.20 Aligned_cols=63 Identities=14% Similarity=0.132 Sum_probs=37.9
Q ss_pred ccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccChhhhcCCCCcEEecCCCCCccccc
Q 036584 608 ERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVEL 683 (919)
Q Consensus 608 ~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~l 683 (919)
..++.|+.|++++ +. +. .+| .+..+++|++|+|++|.++.+|. +..+++|++|++++| .+..+
T Consensus 43 ~~l~~L~~L~l~~-~~-----i~---~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n--~l~~~ 105 (291)
T 1h6t_A 43 NELNSIDQIIANN-SD-----IK---SVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN--KVKDL 105 (291)
T ss_dssp HHHHTCCEEECTT-SC-----CC---CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS--CCCCG
T ss_pred hhcCcccEEEccC-CC-----cc---cCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC--cCCCC
Confidence 3455666666666 55 54 443 35666666666666666666655 666666666666666 44443
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.42 E-value=2.1e-14 Score=160.10 Aligned_cols=270 Identities=16% Similarity=0.124 Sum_probs=172.1
Q ss_pred CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhhh-------hcccccceEEeecC
Q 036584 580 NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEK-------IGDLIHLKYLGLRN 652 (919)
Q Consensus 580 ~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~-------i~~L~~Lr~L~L~~ 652 (919)
+++|++|.+.++..+. .....+...+..+++|++|+|++ +... .+. +.+|.. +..+++|++|+|++
T Consensus 31 ~~~L~~L~L~~n~i~~--~~~~~l~~~l~~~~~L~~L~Ls~-~~~~--~l~--~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGT--EAARWLSENIASKKDLEIAEFSD-IFTG--RVK--DEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp CSCCCEEECTTSEECH--HHHHHHHHTTTTCTTCCEEECCS-CCTT--SCG--GGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred CCCccEEECCCCCCCH--HHHHHHHHHHHhCCCccEEeCcc-cccC--ccc--cchhHHHHHHHHHHhhCCcccEEECCC
Confidence 7889999999983211 01112444577899999999998 5310 021 134444 47899999999999
Q ss_pred CCccc-----cChhhhcCCCCcEEecCCCCCcccccC-ccccc-cccccccccccccccCCCCcCcCcccccccccc--c
Q 036584 653 SNIGI-----LPSSIVKLQRLQTLDFSGDVGCPVELP-IEINM-MQELRHLIGNFKGTLPIENLTNLQTLKYVQSKS--W 723 (919)
Q Consensus 653 ~~i~~-----LP~~l~~L~~L~~L~L~~~~~~~~~lp-~~i~~-L~~L~~L~~~~~~~~~i~~l~~L~~L~~~~~~~--~ 723 (919)
|.++. +|..+..+++|++|+|++| .+...+ ..+.. +.++... ... +..++|++|.+..+.. .
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n--~l~~~~~~~l~~~l~~l~~~--~~~-----~~~~~L~~L~L~~n~l~~~ 174 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNN--GLGPQAGAKIARALQELAVN--KKA-----KNAPPLRSIICGRNRLENG 174 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSS--CCHHHHHHHHHHHHHHHHHH--HHH-----HTCCCCCEEECCSSCCTGG
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCC--CCCHHHHHHHHHHHHHHhhh--hhc-----ccCCCCcEEECCCCCCCcH
Confidence 99965 8889999999999999999 554222 12221 1111000 000 1116777887777662 2
Q ss_pred ch----hhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCc--cCc-CCCCCCCCceeEEEcee
Q 036584 724 NK----VNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSF--ASL-QPLSHCQCLVDLRLSGR 796 (919)
Q Consensus 724 ~~----~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~-~~l~~~~~L~~L~L~~~ 796 (919)
.. ..+..+++|+.|.++++.....+.....+..+..+++|+.|+|+++..... ..+ ..+..+++|++|+|++|
T Consensus 175 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n 254 (386)
T 2ca6_A 175 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254 (386)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC
Confidence 22 356788999999999986331111110213677889999999965432100 111 23667899999999987
Q ss_pred c-CC-----CCcchhc--cCCCcceEEEEccCCCC----CCchhh-hcCCCCCeEEEeeccccCee--EEEcCCCCcccc
Q 036584 797 M-KK-----LPEDMHV--FLPNLECLSLSVPYPKE----DPMPAL-EMLPNLIILDLHFRCHYVKK--LGCRAEGFPLLE 861 (919)
Q Consensus 797 ~-~~-----~p~~~~~--l~~~L~~L~L~~~~l~~----~~~~~l-~~lp~L~~L~L~~~~~~~~~--~~~~~~~f~~L~ 861 (919)
. .. +|.++.. + ++|++|+|++|.++. ..+..+ .++|+|++|+|++|.+.... +..-...+++++
T Consensus 255 ~i~~~~~~~l~~~l~~~~~-~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~ 333 (386)
T 2ca6_A 255 LLSARGAAAVVDAFSKLEN-IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRG 333 (386)
T ss_dssp CCCHHHHHHHHHHHHTCSS-CCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHT
T ss_pred CCchhhHHHHHHHHhhccC-CCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcC
Confidence 5 21 3555533 4 999999999999875 255556 67999999999977765432 111123466777
Q ss_pred eeEEe
Q 036584 862 ILQLD 866 (919)
Q Consensus 862 ~L~l~ 866 (919)
.+.+.
T Consensus 334 ~~~l~ 338 (386)
T 2ca6_A 334 RGELD 338 (386)
T ss_dssp CCEEC
T ss_pred cchhh
Confidence 66665
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.41 E-value=2.5e-13 Score=158.81 Aligned_cols=172 Identities=18% Similarity=0.210 Sum_probs=81.0
Q ss_pred ccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccChhhhcCCCCcEEecCCCCCcccccCccc
Q 036584 608 ERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVELPIEI 687 (919)
Q Consensus 608 ~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~~i 687 (919)
..++.|+.|++++ +. +. .+| .++.|++|++|+|++|.|..+|. +..|++|+.|+|++| .+..+| .+
T Consensus 40 ~~L~~L~~L~l~~-n~-----i~---~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N--~l~~l~-~l 105 (605)
T 1m9s_A 40 NELNSIDQIIANN-SD-----IK---SVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN--KIKDLS-SL 105 (605)
T ss_dssp HHHTTCCCCBCTT-CC-----CC---CCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS--CCCCCT-TS
T ss_pred hcCCCCCEEECcC-CC-----CC---CCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC--CCCCCh-hh
Confidence 3445555555555 44 44 343 35555556666665555555554 555555666666555 444433 23
Q ss_pred cccccccccccccccccCCCCcCcCcccccccccccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEE
Q 036584 688 NMMQELRHLIGNFKGTLPIENLTNLQTLKYVQSKSWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLS 767 (919)
Q Consensus 688 ~~L~~L~~L~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 767 (919)
. .+++|+.|.+..+....+..+..+++|+.|.++++... .. ..+..+++|+.|+
T Consensus 106 ~-------------------~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~----~l---~~l~~l~~L~~L~ 159 (605)
T 1m9s_A 106 K-------------------DLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKIT----DI---TVLSRLTKLDTLS 159 (605)
T ss_dssp T-------------------TCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCC----CC---GGGGSCTTCSEEE
T ss_pred c-------------------cCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccC----Cc---hhhcccCCCCEEE
Confidence 3 33333333333333222233444555555555554321 11 2344455555555
Q ss_pred EeecCCCCccCcCCCCCCCCceeEEEceec-CCCCcchhccCCCcceEEEEccCCCCC
Q 036584 768 VKLLDANSFASLQPLSHCQCLVDLRLSGRM-KKLPEDMHVFLPNLECLSLSVPYPKED 824 (919)
Q Consensus 768 l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~ 824 (919)
|++ +.+..+.++..+++|+.|+|++|. ..+| .+..+ ++|+.|+|++|.+...
T Consensus 160 Ls~---N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~-~l~~l-~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 160 LED---NQISDIVPLAGLTKLQNLYLSKNHISDLR-ALAGL-KNLDVLELFSQECLNK 212 (605)
T ss_dssp CCS---SCCCCCGGGTTCTTCCEEECCSSCCCBCG-GGTTC-TTCSEEECCSEEEECC
T ss_pred CcC---CcCCCchhhccCCCCCEEECcCCCCCCCh-HHccC-CCCCEEEccCCcCcCC
Confidence 532 223233334445555555555543 2232 33333 5555555555555443
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.41 E-value=6.7e-13 Score=145.63 Aligned_cols=236 Identities=14% Similarity=0.100 Sum_probs=136.5
Q ss_pred EEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccCh-hhhcCCCCcEEecCCCCCcccccCcc-ccccc
Q 036584 614 RVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILPS-SIVKLQRLQTLDFSGDVGCPVELPIE-INMMQ 691 (919)
Q Consensus 614 rvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~-~l~~L~~L~~L~L~~~~~~~~~lp~~-i~~L~ 691 (919)
++++.++ +. ++ ++|..+ ..+|++|+|++|+|+.+|. .+.+|++|++|+|++| ...+.+|.. +.+|+
T Consensus 12 ~~v~C~~-~~-----Lt---~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~i~~~i~~~~f~~L~ 79 (350)
T 4ay9_X 12 RVFLCQE-SK-----VT---EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN-DVLEVIEADVFSNLP 79 (350)
T ss_dssp TEEEEES-TT-----CC---SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECC-TTCCEECTTSBCSCT
T ss_pred CEEEecC-CC-----CC---ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCC-CCCCccChhHhhcch
Confidence 4566666 66 76 788766 3678999999999998887 5788999999999988 223556653 44555
Q ss_pred cccccccccccccCCCCcCcCcccccccccccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeec
Q 036584 692 ELRHLIGNFKGTLPIENLTNLQTLKYVQSKSWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLL 771 (919)
Q Consensus 692 ~L~~L~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 771 (919)
+|..+.... ..+|. ......+..+++|+.|.++++... ... . ..+....++..|.+..
T Consensus 80 ~l~~~l~~~--------~N~l~--------~l~~~~f~~l~~L~~L~l~~n~l~---~~~-~-~~~~~~~~l~~l~l~~- 137 (350)
T 4ay9_X 80 KLHEIRIEK--------ANNLL--------YINPEAFQNLPNLQYLLISNTGIK---HLP-D-VHKIHSLQKVLLDIQD- 137 (350)
T ss_dssp TCCEEEEEE--------ETTCC--------EECTTSBCCCTTCCEEEEEEECCS---SCC-C-CTTCCBSSCEEEEEES-
T ss_pred hhhhhhccc--------CCccc--------ccCchhhhhccccccccccccccc---cCC-c-hhhcccchhhhhhhcc-
Confidence 555431100 00000 112334555666666666665422 111 0 1222233445555532
Q ss_pred CCCCccCcCC--CCC-CCCceeEEEceec-CCCCcchhccCCCcceEEEEc-cCCCCCCchhhhcCCCCCeEEEeecccc
Q 036584 772 DANSFASLQP--LSH-CQCLVDLRLSGRM-KKLPEDMHVFLPNLECLSLSV-PYPKEDPMPALEMLPNLIILDLHFRCHY 846 (919)
Q Consensus 772 ~~~~~~~~~~--l~~-~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~-~~l~~~~~~~l~~lp~L~~L~L~~~~~~ 846 (919)
.+.+..+.. +.. ...++.|++++|. ..+|...+.. .+|+.|.+.+ |.+...+...++.+++|+.|+|++|.+.
T Consensus 138 -~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 138 -NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp -CTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTT-EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred -ccccccccccchhhcchhhhhhccccccccCCChhhccc-cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 222222221 222 3457777777764 5566555555 6777777764 4555444456677788888888755543
Q ss_pred CeeEEEcCCCCcccceeEEe-cCCcccEEEccCCcccccceEEcc
Q 036584 847 VKKLGCRAEGFPLLEILQLD-ADGLVEWQVEEGAMPVLRGLKIAA 890 (919)
Q Consensus 847 ~~~~~~~~~~f~~L~~L~l~-~~~l~~~~~~~~~~p~L~~L~l~~ 890 (919)
. + ....|.+|+.|.+. +++++.+| ....+++|+.+++.+
T Consensus 216 ~--l--p~~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 216 S--L--PSYGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp C--C--CSSSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred c--c--ChhhhccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 2 1 23457777777766 66777666 345677777777754
No 102
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.41 E-value=1.2e-13 Score=151.06 Aligned_cols=82 Identities=15% Similarity=0.152 Sum_probs=43.6
Q ss_pred CcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCcc-ccC
Q 036584 581 SLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIG-ILP 659 (919)
Q Consensus 581 ~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~-~LP 659 (919)
++++.|.+.++. .....+. +..+++|++|+|++ +. +.. ..+|..+..+++|++|+|++|.++ ..|
T Consensus 70 ~~l~~L~l~~n~------l~~~~~~-~~~~~~L~~L~L~~-~~-----l~~-~~~~~~~~~~~~L~~L~L~~~~l~~~~~ 135 (336)
T 2ast_B 70 QGVIAFRCPRSF------MDQPLAE-HFSPFRVQHMDLSN-SV-----IEV-STLHGILSQCSKLQNLSLEGLRLSDPIV 135 (336)
T ss_dssp TTCSEEECTTCE------ECSCCCS-CCCCBCCCEEECTT-CE-----ECH-HHHHHHHTTBCCCSEEECTTCBCCHHHH
T ss_pred ccceEEEcCCcc------ccccchh-hccCCCCCEEEccC-CC-----cCH-HHHHHHHhhCCCCCEEeCcCcccCHHHH
Confidence 556666665551 1111122 33456666666666 54 431 015555566666666666666653 455
Q ss_pred hhhhcCCCCcEEecCCC
Q 036584 660 SSIVKLQRLQTLDFSGD 676 (919)
Q Consensus 660 ~~l~~L~~L~~L~L~~~ 676 (919)
..++.+++|++|++++|
T Consensus 136 ~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 136 NTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp HHHTTCTTCSEEECTTC
T ss_pred HHHhcCCCCCEEECCCC
Confidence 55666666666666665
No 103
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.40 E-value=1.3e-12 Score=135.09 Aligned_cols=126 Identities=13% Similarity=0.080 Sum_probs=58.4
Q ss_pred HhhcCCCcEEEEeecCCCCccCcCCCCCCCCce---eEEEcee-c-CCCCcc-hhccCCCcc-eEEEEccCCCCCCchhh
Q 036584 757 IAKLKNLRFLSVKLLDANSFASLQPLSHCQCLV---DLRLSGR-M-KKLPED-MHVFLPNLE-CLSLSVPYPKEDPMPAL 829 (919)
Q Consensus 757 l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~---~L~L~~~-~-~~~p~~-~~~l~~~L~-~L~L~~~~l~~~~~~~l 829 (919)
+..+++|+.|++.++.... ++.+..+++|+ .|++++| . ..+|.. +..+ ++|+ .|++++|.++..+...+
T Consensus 101 f~~l~~L~~L~l~~n~l~~---lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l-~~L~~~L~l~~n~l~~i~~~~~ 176 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKM---FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGL-CNETLTLKLYNNGFTSVQGYAF 176 (239)
T ss_dssp EECCTTCCEEEEEEECCCS---CCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTT-BSSEEEEECCSCCCCEECTTTT
T ss_pred hCCCCCCCEEeCCCCCCcc---ccccccccccccccEEECCCCcchhhcCcccccch-hcceeEEEcCCCCCcccCHhhc
Confidence 3445666677765443222 22233444444 6666655 2 333332 3333 5666 66666665542222222
Q ss_pred hcCCCCCeEEEeeccccCeeEE-EcCCCC-cccceeEEecCCcccEEEccCCcccccceEEcc
Q 036584 830 EMLPNLIILDLHFRCHYVKKLG-CRAEGF-PLLEILQLDADGLVEWQVEEGAMPVLRGLKIAA 890 (919)
Q Consensus 830 ~~lp~L~~L~L~~~~~~~~~~~-~~~~~f-~~L~~L~l~~~~l~~~~~~~~~~p~L~~L~l~~ 890 (919)
.. ++|+.|+|++|.... .++ ....++ ++|+.|+++.|.++.++.. .+++|+.|.+++
T Consensus 177 ~~-~~L~~L~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~ 235 (239)
T 2xwt_C 177 NG-TKLDAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARN 235 (239)
T ss_dssp TT-CEEEEEECTTCTTCC-EECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTT
T ss_pred CC-CCCCEEEcCCCCCcc-cCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccC
Confidence 22 556666665432111 111 122344 5555555555555544322 455555555554
No 104
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.40 E-value=1.4e-12 Score=143.07 Aligned_cols=241 Identities=15% Similarity=0.104 Sum_probs=163.8
Q ss_pred hhcccccceEEeecCCCccccChhhhcCCCCcEEecCCCCCcccccCcc-ccccccccccccccccccCCCCcCcCcccc
Q 036584 638 KIGDLIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVELPIE-INMMQELRHLIGNFKGTLPIENLTNLQTLK 716 (919)
Q Consensus 638 ~i~~L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~~-i~~L~~L~~L~~~~~~~~~i~~l~~L~~L~ 716 (919)
.+|.+.. ++++.++++++.+|..+ ..+|++|+|++| .+..+|.+ +.+|++|++| +
T Consensus 5 ~~C~C~~-~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N--~i~~i~~~~f~~l~~L~~L-------------------~ 60 (350)
T 4ay9_X 5 RICHCSN-RVFLCQESKVTEIPSDL--PRNAIELRFVLT--KLRVIQKGAFSGFGDLEKI-------------------E 60 (350)
T ss_dssp SSSEEET-TEEEEESTTCCSCCTTC--CTTCSEEEEESC--CCSEECTTSSTTCTTCCEE-------------------E
T ss_pred CccEeeC-CEEEecCCCCCccCcCc--CCCCCEEEccCC--cCCCcCHHHHcCCCCCCEE-------------------E
Confidence 3455533 67888999999999877 478999999999 88888874 4555555555 4
Q ss_pred cccccc---cchhhccCCCCCCeEEe-eecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCcCCCCCCCCceeEE
Q 036584 717 YVQSKS---WNKVNTAKLVNLRDLHI-EEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASLQPLSHCQCLVDLR 792 (919)
Q Consensus 717 ~~~~~~---~~~~~l~~l~~L~~L~i-~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 792 (919)
+..+.. .....+..++++..+.+ ..+. ... . .+..+..+++|+.|.+.++....++.. ......++..|+
T Consensus 61 Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~---l~~-l-~~~~f~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~l~~l~ 134 (350)
T 4ay9_X 61 ISQNDVLEVIEADVFSNLPKLHEIRIEKANN---LLY-I-NPEAFQNLPNLQYLLISNTGIKHLPDV-HKIHSLQKVLLD 134 (350)
T ss_dssp EECCTTCCEECTTSBCSCTTCCEEEEEEETT---CCE-E-CTTSBCCCTTCCEEEEEEECCSSCCCC-TTCCBSSCEEEE
T ss_pred CcCCCCCCccChhHhhcchhhhhhhcccCCc---ccc-c-CchhhhhccccccccccccccccCCch-hhcccchhhhhh
Confidence 444431 11233556666665443 3332 111 1 125678899999999976543332211 122345677888
Q ss_pred Eceec--CCCCc-chhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccccCeeEEE-cCCCCcccceeEEecC
Q 036584 793 LSGRM--KKLPE-DMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHYVKKLGC-RAEGFPLLEILQLDAD 868 (919)
Q Consensus 793 L~~~~--~~~p~-~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~-~~~~f~~L~~L~l~~~ 868 (919)
+.++. ..+|. .+..+...++.|+|++|.++. .++.....++|+.|.+.+++.. ..++. .+.++++|+.|+++.|
T Consensus 135 l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l-~~i~~~~f~~l~~L~~LdLs~N 212 (350)
T 4ay9_X 135 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNL-EELPNDVFHGASGPVILDISRT 212 (350)
T ss_dssp EESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTC-CCCCTTTTTTEECCSEEECTTS
T ss_pred hccccccccccccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCcc-cCCCHHHhccCcccchhhcCCC
Confidence 87642 34443 344444679999999999974 4455556788999999844433 33332 3467899999999988
Q ss_pred CcccEEEccCCcccccceEEccccCccC-CcccccCCCCCCeeEecc
Q 036584 869 GLVEWQVEEGAMPVLRGLKIAAEIPKLK-IPERLRSVPPPAEWECED 914 (919)
Q Consensus 869 ~l~~~~~~~~~~p~L~~L~l~~nC~~l~-lp~~l~~L~~L~~l~~~~ 914 (919)
+++.++ ...+.+|++|.+.+ |++++ +|. +..+++|+.+++..
T Consensus 213 ~l~~lp--~~~~~~L~~L~~l~-~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 213 RIHSLP--SYGLENLKKLRARS-TYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp CCCCCC--SSSCTTCCEEECTT-CTTCCCCCC-TTTCCSCCEEECSC
T ss_pred CcCccC--hhhhccchHhhhcc-CCCcCcCCC-chhCcChhhCcCCC
Confidence 999885 45689999999999 99999 985 88999999998753
No 105
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.40 E-value=2.2e-12 Score=136.00 Aligned_cols=198 Identities=21% Similarity=0.229 Sum_probs=128.1
Q ss_pred hccc-ccceEEeecCCCccccChhhhcCCCCcEEecCCCCCcccccCc-cccccccccccccccccccCCCCcCcCcccc
Q 036584 639 IGDL-IHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVELPI-EINMMQELRHLIGNFKGTLPIENLTNLQTLK 716 (919)
Q Consensus 639 i~~L-~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~-~i~~L~~L~~L~~~~~~~~~i~~l~~L~~L~ 716 (919)
.|.+ ..+++++++++.++.+|..+. .+|++|++++| .+..+|. .+..+++|++| +
T Consensus 11 ~C~c~~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n--~l~~~~~~~~~~l~~L~~L-------------------~ 67 (270)
T 2o6q_A 11 VCSCNNNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSN--KLSSLPSKAFHRLTKLRLL-------------------Y 67 (270)
T ss_dssp SBEEETTTTEEECTTSCCSSCCSCCC--TTCSEEECCSS--CCSCCCTTSSSSCTTCCEE-------------------E
T ss_pred CCEeCCCCCEEEccCCCCCccCCCCC--CCCCEEECcCC--CCCeeCHHHhcCCCCCCEE-------------------E
Confidence 3444 358899999999999998665 68999999999 7777775 45555555554 3
Q ss_pred ccccc--ccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCcCC--CCCCCCceeEE
Q 036584 717 YVQSK--SWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASLQP--LSHCQCLVDLR 792 (919)
Q Consensus 717 ~~~~~--~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--l~~~~~L~~L~ 792 (919)
+..+. ......+..+++|+.|+++++... ... . ..+..+++|+.|.+.+ +.+..+.+ +..+++|++|+
T Consensus 68 l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~---~~~-~-~~~~~l~~L~~L~l~~---n~l~~~~~~~~~~l~~L~~L~ 139 (270)
T 2o6q_A 68 LNDNKLQTLPAGIFKELKNLETLWVTDNKLQ---ALP-I-GVFDQLVNLAELRLDR---NQLKSLPPRVFDSLTKLTYLS 139 (270)
T ss_dssp CCSSCCSCCCTTTTSSCTTCCEEECCSSCCC---CCC-T-TTTTTCSSCCEEECCS---SCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCccCeeChhhhcCCCCCCEEECCCCcCC---cCC-H-hHcccccCCCEEECCC---CccCeeCHHHhCcCcCCCEEE
Confidence 33333 112233566788888888877522 221 1 4566778888888754 33333332 56677888888
Q ss_pred Eceec-CCCCcc-hhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccccCeeEEE-cCCCCcccceeEEecCC
Q 036584 793 LSGRM-KKLPED-MHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHYVKKLGC-RAEGFPLLEILQLDADG 869 (919)
Q Consensus 793 L~~~~-~~~p~~-~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~-~~~~f~~L~~L~l~~~~ 869 (919)
|++|. ..+|.. +..+ ++|+.|+|++|.++...+..+..+++|+.|+|++|.... ++. ....+++|+.|+++.|.
T Consensus 140 Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 140 LGYNELQSLPKGVFDKL-TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR--VPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCSSCCCCCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC--CCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCcCCccCHhHccCC-cccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc--CCHHHhccccCCCEEEecCCC
Confidence 88764 445544 3444 788888888887776665667778888888887554432 221 23456777777777444
Q ss_pred c
Q 036584 870 L 870 (919)
Q Consensus 870 l 870 (919)
+
T Consensus 217 ~ 217 (270)
T 2o6q_A 217 W 217 (270)
T ss_dssp B
T ss_pred e
Confidence 3
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.36 E-value=3.5e-12 Score=135.82 Aligned_cols=172 Identities=20% Similarity=0.222 Sum_probs=117.2
Q ss_pred hhcccccceEEeecCCCccccChhhhcCCCCcEEecCCCCCcccccCccccccccccccccccccccCCCCcCcCccccc
Q 036584 638 KIGDLIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVELPIEINMMQELRHLIGNFKGTLPIENLTNLQTLKY 717 (919)
Q Consensus 638 ~i~~L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~i~~l~~L~~L~~ 717 (919)
.+..+.+|++|++++|.+..+|. +..+++|++|++++| .+..+|. +..+++|++| .+
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n--~l~~~~~-l~~l~~L~~L-------------------~l 97 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGN--KLTDIKP-LANLKNLGWL-------------------FL 97 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSS--CCCCCGG-GTTCTTCCEE-------------------EC
T ss_pred chhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCC--ccCCCcc-cccCCCCCEE-------------------EC
Confidence 35679999999999999999874 899999999999999 7777776 6666666665 33
Q ss_pred ccccccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCcCCCCCCCCceeEEEceec
Q 036584 718 VQSKSWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASLQPLSHCQCLVDLRLSGRM 797 (919)
Q Consensus 718 ~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 797 (919)
..+....+..+..+++|+.|+++++... .. ..+..+++|+.|++++ +.+..+..+..+++|+.|++++|.
T Consensus 98 ~~n~l~~~~~l~~l~~L~~L~L~~n~i~----~~---~~l~~l~~L~~L~l~~---n~l~~~~~l~~l~~L~~L~L~~N~ 167 (291)
T 1h6t_A 98 DENKVKDLSSLKDLKKLKSLSLEHNGIS----DI---NGLVHLPQLESLYLGN---NKITDITVLSRLTKLDTLSLEDNQ 167 (291)
T ss_dssp CSSCCCCGGGGTTCTTCCEEECTTSCCC----CC---GGGGGCTTCCEEECCS---SCCCCCGGGGGCTTCSEEECCSSC
T ss_pred CCCcCCCChhhccCCCCCEEECCCCcCC----CC---hhhcCCCCCCEEEccC---CcCCcchhhccCCCCCEEEccCCc
Confidence 3333222334566677777777766422 11 3456677777777743 334344456667778888887764
Q ss_pred -CCCCcchhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeecccc
Q 036584 798 -KKLPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHY 846 (919)
Q Consensus 798 -~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~ 846 (919)
..++. +..+ ++|+.|+|++|.++. .+.+..+++|+.|++++|...
T Consensus 168 l~~~~~-l~~l-~~L~~L~L~~N~i~~--l~~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 168 ISDIVP-LAGL-TKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CCCCGG-GTTC-TTCCEEECCSSCCCB--CGGGTTCTTCSEEEEEEEEEE
T ss_pred cccchh-hcCC-CccCEEECCCCcCCC--ChhhccCCCCCEEECcCCccc
Confidence 34443 5555 788888888887754 245778888888888866543
No 107
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.35 E-value=6.7e-13 Score=143.02 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=28.3
Q ss_pred ccccceEEeecCCCc-cccChhh--hcCCCCcEEecCCC
Q 036584 641 DLIHLKYLGLRNSNI-GILPSSI--VKLQRLQTLDFSGD 676 (919)
Q Consensus 641 ~L~~Lr~L~L~~~~i-~~LP~~l--~~L~~L~~L~L~~~ 676 (919)
.+.+|++|+|++|.+ ...|..+ ..+++|++|++++|
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 127 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNV 127 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecc
Confidence 356688888888888 4666666 78888888888888
No 108
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.34 E-value=1.9e-13 Score=150.89 Aligned_cols=159 Identities=13% Similarity=0.095 Sum_probs=92.9
Q ss_pred ccCC-CCCCeEEeeecCccccccccchhhHHhhc-CCCcEEEEeecCCCCccCcC------CCCCC-CCceeEEEceec-
Q 036584 728 TAKL-VNLRDLHIEEDEDEWEGETVFSFESIAKL-KNLRFLSVKLLDANSFASLQ------PLSHC-QCLVDLRLSGRM- 797 (919)
Q Consensus 728 l~~l-~~L~~L~i~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~------~l~~~-~~L~~L~L~~~~- 797 (919)
+..+ ++|+.|+++++......... ....+..+ ++|+.|+++++ .+.... .+..+ ++|++|+|++|.
T Consensus 104 l~~~~~~L~~L~Ls~N~l~~~~~~~-l~~~l~~~~~~L~~L~Ls~N---~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 104 LAAIPFTITVLDLGWNDFSSKSSSE-FKQAFSNLPASITSLNLRGN---DLGIKSSDELIQILAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSCHHH-HHHHHTTSCTTCCEEECTTS---CGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHhCCCCccEEECcCCcCCcHHHHH-HHHHHHhCCCceeEEEccCC---cCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence 4445 78999999988633111111 01234443 58999998543 332111 12233 489999998874
Q ss_pred C-CCCcchh----ccCCCcceEEEEccCCCCCCc----hhhhc-CCCCCeEEEeeccccCeeE---EEcCCCCcccceeE
Q 036584 798 K-KLPEDMH----VFLPNLECLSLSVPYPKEDPM----PALEM-LPNLIILDLHFRCHYVKKL---GCRAEGFPLLEILQ 864 (919)
Q Consensus 798 ~-~~p~~~~----~l~~~L~~L~L~~~~l~~~~~----~~l~~-lp~L~~L~L~~~~~~~~~~---~~~~~~f~~L~~L~ 864 (919)
. ..+..+. ..+++|+.|+|++|.+..... ..+.. .++|+.|+|++|....... ......+++|+.|+
T Consensus 180 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~ 259 (362)
T 3goz_A 180 ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVY 259 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEE
T ss_pred chhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEE
Confidence 2 2332332 222489999999998865433 34444 4589999998776544321 22345678888888
Q ss_pred EecCCcccE--------EEccCCcccccceEEcc
Q 036584 865 LDADGLVEW--------QVEEGAMPVLRGLKIAA 890 (919)
Q Consensus 865 l~~~~l~~~--------~~~~~~~p~L~~L~l~~ 890 (919)
++.+.+..+ ......+++|+.|++++
T Consensus 260 L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~ 293 (362)
T 3goz_A 260 LDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293 (362)
T ss_dssp EEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS
T ss_pred eccCCccccCHHHHHHHHHHhccCCceEEEecCC
Confidence 885443322 11234567788888877
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.30 E-value=4.8e-12 Score=148.00 Aligned_cols=173 Identities=20% Similarity=0.217 Sum_probs=133.5
Q ss_pred hhcccccceEEeecCCCccccChhhhcCCCCcEEecCCCCCcccccCccccccccccccccccccccCCCCcCcCccccc
Q 036584 638 KIGDLIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVELPIEINMMQELRHLIGNFKGTLPIENLTNLQTLKY 717 (919)
Q Consensus 638 ~i~~L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~i~~l~~L~~L~~ 717 (919)
.+..|.+|++|+|++|.|..+| .+..|++|+.|+|++| .+..+|. +..|++|++| .+
T Consensus 38 ~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N--~l~~~~~-l~~l~~L~~L-------------------~L 94 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN--KLTDIKP-LTNLKNLGWL-------------------FL 94 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTS--CCCCCGG-GGGCTTCCEE-------------------EC
T ss_pred chhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCC--CCCCChh-hccCCCCCEE-------------------EC
Confidence 3578999999999999999997 5999999999999999 7777776 5555555555 33
Q ss_pred ccccccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCcCCCCCCCCceeEEEceec
Q 036584 718 VQSKSWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASLQPLSHCQCLVDLRLSGRM 797 (919)
Q Consensus 718 ~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 797 (919)
..+....+..+..+++|+.|.++++... .+ ..+..+++|+.|.|+. +.+..+..+..+++|+.|+|++|.
T Consensus 95 s~N~l~~l~~l~~l~~L~~L~Ls~N~l~----~l---~~l~~l~~L~~L~Ls~---N~l~~l~~l~~l~~L~~L~Ls~N~ 164 (605)
T 1m9s_A 95 DENKIKDLSSLKDLKKLKSLSLEHNGIS----DI---NGLVHLPQLESLYLGN---NKITDITVLSRLTKLDTLSLEDNQ 164 (605)
T ss_dssp CSSCCCCCTTSTTCTTCCEEECTTSCCC----CC---GGGGGCTTCSEEECCS---SCCCCCGGGGSCTTCSEEECCSSC
T ss_pred cCCCCCCChhhccCCCCCEEEecCCCCC----CC---ccccCCCccCEEECCC---CccCCchhhcccCCCCEEECcCCc
Confidence 3333223346788899999999988633 12 4578899999999954 445555667889999999999985
Q ss_pred -CCCCcchhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccccC
Q 036584 798 -KKLPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHYV 847 (919)
Q Consensus 798 -~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~ 847 (919)
..++. +..+ ++|+.|+|++|.+.. ++.+..|++|+.|+|++|.+..
T Consensus 165 l~~~~~-l~~l-~~L~~L~Ls~N~i~~--l~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 165 ISDIVP-LAGL-TKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCCCGG-GTTC-TTCCEEECCSSCCCB--CGGGTTCTTCSEEECCSEEEEC
T ss_pred CCCchh-hccC-CCCCEEECcCCCCCC--ChHHccCCCCCEEEccCCcCcC
Confidence 44443 6666 999999999999874 3679999999999999766543
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.29 E-value=3.3e-12 Score=147.59 Aligned_cols=182 Identities=15% Similarity=0.118 Sum_probs=93.6
Q ss_pred eEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccChhhhcCCCCcEEecCCCCCcccccCccccccc
Q 036584 612 LLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVELPIEINMMQ 691 (919)
Q Consensus 612 ~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~ 691 (919)
+|++|+|++ +. +. .+|..+. ++|++|+|++|.|+.+| ..+++|++|++++| .+..+|. +.+
T Consensus 60 ~L~~L~Ls~-n~-----L~---~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N--~l~~ip~-l~~-- 120 (571)
T 3cvr_A 60 QFSELQLNR-LN-----LS---SLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDN--RLSTLPE-LPA-- 120 (571)
T ss_dssp TCSEEECCS-SC-----CS---CCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSS--CCSCCCC-CCT--
T ss_pred CccEEEeCC-CC-----CC---ccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCC--CCCCcch-hhc--
Confidence 677788877 66 66 5776553 67888888888887777 45677888888877 6666776 543
Q ss_pred ccccccc---ccccccCCCCcCcCcccccccccccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEE
Q 036584 692 ELRHLIG---NFKGTLPIENLTNLQTLKYVQSKSWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSV 768 (919)
Q Consensus 692 ~L~~L~~---~~~~~~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 768 (919)
+|++|.. ....... .+++|+.|++..|....+.. .+++|+.|++++|... ... . +. ++|+.|+|
T Consensus 121 ~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~---~lp---~-l~--~~L~~L~L 187 (571)
T 3cvr_A 121 SLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLT---FLP---E-LP--ESLEALDV 187 (571)
T ss_dssp TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCS---CCC---C-CC--TTCCEEEC
T ss_pred CCCEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCC---Ccc---h-hh--CCCCEEEC
Confidence 5555522 1111111 34444444444443111111 3445555555555321 111 1 21 45555555
Q ss_pred eecCCCCccCcCCCCCCCCc-------eeEEEceec-CCCCcchhccCCCcceEEEEccCCCCCCchhhhc
Q 036584 769 KLLDANSFASLQPLSHCQCL-------VDLRLSGRM-KKLPEDMHVFLPNLECLSLSVPYPKEDPMPALEM 831 (919)
Q Consensus 769 ~~~~~~~~~~~~~l~~~~~L-------~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~ 831 (919)
+++ .+..++.+. ++| +.|+|++|. ..+|.++..+ ++|+.|+|++|.+++..+..++.
T Consensus 188 s~N---~L~~lp~~~--~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l-~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 188 STN---LLESLPAVP--VRNHHSEETEIFFRCRENRITHIPENILSL-DPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CSS---CCSSCCCCC----------CCEEEECCSSCCCCCCGGGGGS-CTTEEEECCSSSCCHHHHHHHHH
T ss_pred cCC---CCCchhhHH--HhhhcccccceEEecCCCcceecCHHHhcC-CCCCEEEeeCCcCCCcCHHHHHH
Confidence 322 222222211 133 555555543 4455555553 55555555555555444444444
No 111
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.29 E-value=2e-11 Score=126.99 Aligned_cols=173 Identities=21% Similarity=0.255 Sum_probs=100.5
Q ss_pred ceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccCh-hhhcCCCCcEEecCCCCCcccccCccccc
Q 036584 611 FLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILPS-SIVKLQRLQTLDFSGDVGCPVELPIEINM 689 (919)
Q Consensus 611 ~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~-~l~~L~~L~~L~L~~~~~~~~~lp~~i~~ 689 (919)
...+++++++ +. +. .+|..+. .+|++|+|++|.+..++. .+..+++|++|++++| .+..++...
T Consensus 14 ~~~~~l~~~~-~~-----l~---~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~-- 78 (251)
T 3m19_A 14 EGKKEVDCQG-KS-----LD---SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN--QLQTLSAGV-- 78 (251)
T ss_dssp GGGTEEECTT-CC-----CS---SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS--CCCCCCTTT--
T ss_pred CCCeEEecCC-CC-----cc---ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC--cCCccCHhH--
Confidence 3456777777 66 66 6776655 578888888888865554 5777888888888877 555544321
Q ss_pred cccccccccccccccCCCCcCcCcccccccccccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEe
Q 036584 690 MQELRHLIGNFKGTLPIENLTNLQTLKYVQSKSWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVK 769 (919)
Q Consensus 690 L~~L~~L~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 769 (919)
+..+++|++| +++++... ... +..+..+++|+.|+++
T Consensus 79 ----------------~~~l~~L~~L----------------------~L~~n~l~---~~~--~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 79 ----------------FDDLTELGTL----------------------GLANNQLA---SLP--LGVFDHLTQLDKLYLG 115 (251)
T ss_dssp ----------------TTTCTTCCEE----------------------ECTTSCCC---CCC--TTTTTTCTTCCEEECC
T ss_pred ----------------hccCCcCCEE----------------------ECCCCccc---ccC--hhHhcccCCCCEEEcC
Confidence 2233333333 33333211 111 1334455566666653
Q ss_pred ecCCCCccCcCC--CCCCCCceeEEEceec-CCCCc-chhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccc
Q 036584 770 LLDANSFASLQP--LSHCQCLVDLRLSGRM-KKLPE-DMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCH 845 (919)
Q Consensus 770 ~~~~~~~~~~~~--l~~~~~L~~L~L~~~~-~~~p~-~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~ 845 (919)
+ +.+..+.. +..+++|+.|+|++|. ..+|. .+..+ ++|+.|+|++|.+...++..+..+++|+.|+|++|.+
T Consensus 116 ~---N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 116 G---NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL-TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp S---SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred C---CcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcC-cCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 2 23323322 4456666777776653 34443 34444 7777777777777655555677777777777776554
No 112
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.27 E-value=1.2e-12 Score=144.49 Aligned_cols=241 Identities=13% Similarity=0.162 Sum_probs=133.5
Q ss_pred cchhhhccCceEEEEEeccCccccccccccchhhh-----hhhcccc-cceEEeecCCCcccc-ChhhhcC-----CCCc
Q 036584 602 HLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLS-----EKIGDLI-HLKYLGLRNSNIGIL-PSSIVKL-----QRLQ 669 (919)
Q Consensus 602 ~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp-----~~i~~L~-~Lr~L~L~~~~i~~L-P~~l~~L-----~~L~ 669 (919)
.+|.++...+.|++|+|++ |. +. ..+ ..+..++ +|++|+|++|.|+.. +..+..+ ++|+
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~-n~-----l~---~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSL-NN-----LY---SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp HHHHHHTSCTTCCEEECTT-SC-----GG---GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred HHHHHHhCCCCceEEEccC-CC-----CC---hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 4455555556688888887 66 55 222 5566677 788888888877544 4455554 7788
Q ss_pred EEecCCCCCcccccCc-cccccccccccccccccccCCCCc-CcCccccccccc--ccch----hhccCC-CCCCeEEee
Q 036584 670 TLDFSGDVGCPVELPI-EINMMQELRHLIGNFKGTLPIENL-TNLQTLKYVQSK--SWNK----VNTAKL-VNLRDLHIE 740 (919)
Q Consensus 670 ~L~L~~~~~~~~~lp~-~i~~L~~L~~L~~~~~~~~~i~~l-~~L~~L~~~~~~--~~~~----~~l~~l-~~L~~L~i~ 740 (919)
+|++++| .+...+. .+... +..+ ++|++|++..+. .... ..+..+ ++|+.|+++
T Consensus 84 ~L~Ls~n--~l~~~~~~~l~~~---------------l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 146 (362)
T 3goz_A 84 SLNLSGN--FLSYKSSDELVKT---------------LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLR 146 (362)
T ss_dssp EEECCSS--CGGGSCHHHHHHH---------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECT
T ss_pred EEECcCC--cCChHHHHHHHHH---------------HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEcc
Confidence 8888877 5554332 22211 0111 334444444433 1111 123332 477777777
Q ss_pred ecCccccccccchhhHHhhcC-CCcEEEEeecCCCCccCcC------CCCCC-CCceeEEEceec-CC-----CCcchhc
Q 036584 741 EDEDEWEGETVFSFESIAKLK-NLRFLSVKLLDANSFASLQ------PLSHC-QCLVDLRLSGRM-KK-----LPEDMHV 806 (919)
Q Consensus 741 ~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~------~l~~~-~~L~~L~L~~~~-~~-----~p~~~~~ 806 (919)
++.....+... .+..+..++ +|+.|+++++ .+.... .+..+ ++|++|+|++|. +. ++..+..
T Consensus 147 ~N~l~~~~~~~-l~~~l~~~~~~L~~L~Ls~n---~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 147 GNDLGIKSSDE-LIQILAAIPANVNSLNLRGN---NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp TSCGGGSCHHH-HHHHHHTSCTTCCEEECTTS---CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred CCcCCHHHHHH-HHHHHhcCCccccEeeecCC---CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 76532111111 114445554 7888887543 332211 12333 478888888764 22 4445555
Q ss_pred cCCCcceEEEEccCCCCCCchh----hhcCCCCCeEEEeeccccCee------EEEcCCCCcccceeEEecCCccc
Q 036584 807 FLPNLECLSLSVPYPKEDPMPA----LEMLPNLIILDLHFRCHYVKK------LGCRAEGFPLLEILQLDADGLVE 872 (919)
Q Consensus 807 l~~~L~~L~L~~~~l~~~~~~~----l~~lp~L~~L~L~~~~~~~~~------~~~~~~~f~~L~~L~l~~~~l~~ 872 (919)
.+++|++|+|++|.+....+.. +..+++|+.|+|++|.+.... +......+++|+.|+++.|.+..
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 4468888888888887655433 356788888888866522111 11223456677777777666553
No 113
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.22 E-value=1.2e-10 Score=120.65 Aligned_cols=201 Identities=14% Similarity=0.093 Sum_probs=120.0
Q ss_pred CCCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 036584 202 EENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSF 281 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 281 (919)
-.+++||++.++.+..++..+. ....+.|+|++|+||||||+.+++.......+.. .... ... ....+....
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~---~~~~---~~~-~~~~~~~~~ 93 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCG---VCD-NCREIEQGR 93 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS---SCCS---CSH-HHHHHHTTC
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC---CCCc---ccH-HHHHHhccC
Confidence 3569999999999999998753 2358899999999999999999874221111100 0000 000 001111000
Q ss_pred cccc-cccccccCCHHHHHHHHHHHh-----ccCceEEEEecccc--hhHHHHHHhhCCCCCCCcEEEEEecchhh-hhh
Q 036584 282 NIMT-ALEDLETKTEEDLARSLRKSL-----EAYSYLMVIDDIWH--KEDWVSLKSAFPENKIGSRVIITTRIKDV-AER 352 (919)
Q Consensus 282 ~~~~-~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iivTtr~~~v-~~~ 352 (919)
.... ..........+. ...+.+.+ .+++.+||+||++. .+.++.+...+.....+..+|+||+.... ...
T Consensus 94 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~ 172 (250)
T 1njg_A 94 FVDLIEIDAASRTKVED-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 172 (250)
T ss_dssp CSSEEEEETTCGGGHHH-HHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHH
T ss_pred CcceEEecCcccccHHH-HHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHH
Confidence 0000 000000011111 22222222 34679999999975 45667777666555567888888876432 111
Q ss_pred cCCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHHHHHh
Q 036584 353 SDDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVLGGLL 413 (919)
Q Consensus 353 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~~~~l 413 (919)
.......+.+++++.++..+++...+...... -..+....|++.|+|.|..+..+...+
T Consensus 173 l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 173 ILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11222689999999999999999877543322 123567789999999999988776544
No 114
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.22 E-value=5.3e-11 Score=123.78 Aligned_cols=176 Identities=16% Similarity=0.212 Sum_probs=110.5
Q ss_pred CcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccCh
Q 036584 581 SLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILPS 660 (919)
Q Consensus 581 ~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~ 660 (919)
...+.+.+.++. . ..+|..+. +.|+.|+|++ +. +.. ..|..+.++++|++|+|++|.|+.+|.
T Consensus 14 ~~~~~l~~~~~~------l-~~~p~~~~--~~l~~L~L~~-n~-----l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 14 EGKKEVDCQGKS------L-DSVPSGIP--ADTEKLDLQS-TG-----LAT--LSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp GGGTEEECTTCC------C-SSCCSCCC--TTCCEEECTT-SC-----CCC--CCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred CCCeEEecCCCC------c-cccCCCCC--CCCCEEEccC-CC-----cCc--cCHhHhcCcccCCEEECCCCcCCccCH
Confidence 345677777662 1 23333232 5799999999 88 762 345578999999999999999977765
Q ss_pred -hhhcCCCCcEEecCCCCCcccccCccccccccccccccccccccCCCCcCcCcccccccccccchhhccCCCCCCeEEe
Q 036584 661 -SIVKLQRLQTLDFSGDVGCPVELPIEINMMQELRHLIGNFKGTLPIENLTNLQTLKYVQSKSWNKVNTAKLVNLRDLHI 739 (919)
Q Consensus 661 -~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~i 739 (919)
.+..+++|++|++++| .+..+|... ++.+++|++| ++
T Consensus 77 ~~~~~l~~L~~L~L~~n--~l~~~~~~~------------------~~~l~~L~~L----------------------~L 114 (251)
T 3m19_A 77 GVFDDLTELGTLGLANN--QLASLPLGV------------------FDHLTQLDKL----------------------YL 114 (251)
T ss_dssp TTTTTCTTCCEEECTTS--CCCCCCTTT------------------TTTCTTCCEE----------------------EC
T ss_pred hHhccCCcCCEEECCCC--cccccChhH------------------hcccCCCCEE----------------------Ec
Confidence 5899999999999999 676666432 2233333333 33
Q ss_pred eecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCcCC--CCCCCCceeEEEceec-CCCCc-chhccCCCcceEE
Q 036584 740 EEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASLQP--LSHCQCLVDLRLSGRM-KKLPE-DMHVFLPNLECLS 815 (919)
Q Consensus 740 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--l~~~~~L~~L~L~~~~-~~~p~-~~~~l~~~L~~L~ 815 (919)
+++... ... +..+..+++|+.|++++ +.+..+.. +..+++|+.|+|++|. ..+|. .+..+ ++|+.|+
T Consensus 115 ~~N~l~---~~~--~~~~~~l~~L~~L~Ls~---N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~ 185 (251)
T 3m19_A 115 GGNQLK---SLP--SGVFDRLTKLKELRLNT---NQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL-GKLQTIT 185 (251)
T ss_dssp CSSCCC---CCC--TTTTTTCTTCCEEECCS---SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC-TTCCEEE
T ss_pred CCCcCC---CcC--hhHhccCCcccEEECcC---CcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCC-CCCCEEE
Confidence 333211 111 13345556666666633 33333332 5556777777777764 34443 44454 8888888
Q ss_pred EEccCCCCC
Q 036584 816 LSVPYPKED 824 (919)
Q Consensus 816 L~~~~l~~~ 824 (919)
|++|.+.+.
T Consensus 186 l~~N~~~c~ 194 (251)
T 3m19_A 186 LFGNQFDCS 194 (251)
T ss_dssp CCSCCBCTT
T ss_pred eeCCceeCC
Confidence 888887654
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.21 E-value=1.6e-11 Score=122.57 Aligned_cols=149 Identities=16% Similarity=0.259 Sum_probs=78.0
Q ss_pred hcCCCcEEEEeecCCCCccCcCCCCCCCCceeEEEceecCCCCcchhccCCCcceEEEEccCCCCCCchhhhcCCCCCeE
Q 036584 759 KLKNLRFLSVKLLDANSFASLQPLSHCQCLVDLRLSGRMKKLPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIIL 838 (919)
Q Consensus 759 ~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L 838 (919)
.+++|+.|++.++ .+..++.+..+++|++|++++|....+..+..+ ++|++|+|++|.++...+..++.+++|++|
T Consensus 42 ~l~~L~~L~l~~n---~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANI---NVTDLTGIEYAHNIKDLTINNIHATNYNPISGL-SNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESS---CCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTC-TTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCC---CccChHHHhcCCCCCEEEccCCCCCcchhhhcC-CCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3445555555432 222223344455556666655543333344444 666666666666554445555666666666
Q ss_pred EEeeccccCeeEEEcCCCCcccceeEEecCC-cccEEEccCCcccccceEEccccCccC-CcccccCCCCCCeeEecccC
Q 036584 839 DLHFRCHYVKKLGCRAEGFPLLEILQLDADG-LVEWQVEEGAMPVLRGLKIAAEIPKLK-IPERLRSVPPPAEWECEDSR 916 (919)
Q Consensus 839 ~L~~~~~~~~~~~~~~~~f~~L~~L~l~~~~-l~~~~~~~~~~p~L~~L~l~~nC~~l~-lp~~l~~L~~L~~l~~~~~~ 916 (919)
++++|.+.... ......+++|++|+++.|. ++.++ ....+|+|+.|++++ +.++ +| .+..+++|+.+++++++
T Consensus 118 ~Ls~n~i~~~~-~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~--n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 118 DISHSAHDDSI-LTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQF--DGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ECCSSBCBGGG-HHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTT--BCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred EecCCccCcHh-HHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCC--CCCcChH-HhccCCCCCEEEeeCcc
Confidence 66644433211 1123455666666666443 55443 344566777777765 3455 55 56666777777776643
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.20 E-value=1.4e-13 Score=159.93 Aligned_cols=37 Identities=19% Similarity=0.116 Sum_probs=31.1
Q ss_pred cccccceEEeecCCCccccChhhhcCCCCcEEecCCC
Q 036584 640 GDLIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGD 676 (919)
Q Consensus 640 ~~L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~ 676 (919)
..+++|+.|+|++|.++.+|.++++|++|+.|++++|
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n 382 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENK 382 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccc
Confidence 5678888888888888888888888888888888666
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.20 E-value=6e-11 Score=118.33 Aligned_cols=40 Identities=18% Similarity=0.266 Sum_probs=24.5
Q ss_pred chhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccc
Q 036584 803 DMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCH 845 (919)
Q Consensus 803 ~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~ 845 (919)
.+..+ ++|+.|++++|.++. .+.+..+|+|+.|++++|.+
T Consensus 154 ~l~~l-~~L~~L~l~~n~i~~--~~~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 154 PLKTL-PELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp GGGGC-SSCCEEECTTBCCCC--CTTGGGCSSCCEEEECBC--
T ss_pred hhcCC-CCCCEEECCCCCCcC--hHHhccCCCCCEEEeeCccc
Confidence 34444 677777777777653 22666777777777775543
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.17 E-value=2.7e-11 Score=126.78 Aligned_cols=59 Identities=19% Similarity=0.285 Sum_probs=30.6
Q ss_pred hccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccChhhhcCCCCcEEecCCC
Q 036584 607 FERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGD 676 (919)
Q Consensus 607 ~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~ 676 (919)
+..++.|++|++++ +. +. .+| .++.+++|++|+|++|.|+.+|. +..+++|++|++++|
T Consensus 37 ~~~l~~L~~L~l~~-n~-----i~---~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 37 QKELSGVQNFNGDN-SN-----IQ---SLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHTTCSEEECTT-SC-----CC---CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS
T ss_pred hhhcCcCcEEECcC-CC-----cc---cch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC
Confidence 34455555555555 44 44 344 44555555555555555555544 555555555555555
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.15 E-value=4.1e-11 Score=125.40 Aligned_cols=168 Identities=18% Similarity=0.133 Sum_probs=99.3
Q ss_pred cCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccChhhhcCCCCcEEecCCCCCcccccCcccc
Q 036584 609 RFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVELPIEIN 688 (919)
Q Consensus 609 ~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~~i~ 688 (919)
.+..+..+++++ +. +. .++ .+..+.+|++|++++|.|+.+| .+..+++|++|++++| .+..+|. +.
T Consensus 17 ~l~~l~~l~l~~-~~-----i~---~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N--~i~~~~~-l~ 82 (263)
T 1xeu_A 17 GLANAVKQNLGK-QS-----VT---DLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN--QISDLSP-LK 82 (263)
T ss_dssp HHHHHHHHHHTC-SC-----TT---SEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS--CCCCCGG-GT
T ss_pred HHHHHHHHHhcC-CC-----cc---ccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC--ccCCChh-hc
Confidence 455566677777 66 65 565 5778888888888888888887 6888888888888888 6666554 43
Q ss_pred ccccccccccccccccCCCCcCcCcccccccccccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEE
Q 036584 689 MMQELRHLIGNFKGTLPIENLTNLQTLKYVQSKSWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSV 768 (919)
Q Consensus 689 ~L~~L~~L~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 768 (919)
.+++|++| ++..+.......+.. ++|+.|++
T Consensus 83 ~l~~L~~L-------------------~L~~N~l~~l~~~~~------------------------------~~L~~L~L 113 (263)
T 1xeu_A 83 DLTKLEEL-------------------SVNRNRLKNLNGIPS------------------------------ACLSRLFL 113 (263)
T ss_dssp TCSSCCEE-------------------ECCSSCCSCCTTCCC------------------------------SSCCEEEC
T ss_pred cCCCCCEE-------------------ECCCCccCCcCcccc------------------------------CcccEEEc
Confidence 33333333 222222111111111 44555554
Q ss_pred eecCCCCccCcCCCCCCCCceeEEEceec-CCCCcchhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeecccc
Q 036584 769 KLLDANSFASLQPLSHCQCLVDLRLSGRM-KKLPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHY 846 (919)
Q Consensus 769 ~~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~ 846 (919)
++ +.+..+..+..+++|+.|++++|. ..+| .+..+ ++|+.|+|++|.+.+. ..+..+++|+.|++++|...
T Consensus 114 ~~---N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l-~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 114 DN---NELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFL-SKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CS---SCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGC-TTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred cC---CccCCChhhcCcccccEEECCCCcCCCCh-HHccC-CCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 32 223233334555666666666553 3333 44454 7777777777776543 56667777777777765543
No 120
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.13 E-value=1e-10 Score=117.81 Aligned_cols=70 Identities=16% Similarity=0.075 Sum_probs=37.8
Q ss_pred HHhhcCCCcEEEEeecCCCCccCcCC--CCCCCCceeEEEceecCCCCcchhccCCCcceEEEEccCCCCCCchhhhcCC
Q 036584 756 SIAKLKNLRFLSVKLLDANSFASLQP--LSHCQCLVDLRLSGRMKKLPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLP 833 (919)
Q Consensus 756 ~l~~l~~L~~L~l~~~~~~~~~~~~~--l~~~~~L~~L~L~~~~~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp 833 (919)
.+..+++|+.|++.+ +.+..+.. +..+++|+.|++++|. +.... ++|+.|.++.|.+++..+..++.++
T Consensus 119 ~~~~l~~L~~L~l~~---N~l~~~~~~~~~~l~~L~~L~l~~N~-----~~~~~-~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 119 VFDKLTQLKDLRLYQ---NQLKSVPDGVFDRLTSLQYIWLHDNP-----WDCTC-PGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp TTTTCTTCCEEECCS---SCCSCCCTTTTTTCTTCCEEECCSCC-----BCCCT-TTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred HhccCCcCCEEECCC---CccceeCHHHhccCCCccEEEecCCC-----eecCC-CCHHHHHHHHHhCCceeeccCcccc
Confidence 345556666666633 22222222 4455666666666652 22222 6667777777766666666666554
Q ss_pred C
Q 036584 834 N 834 (919)
Q Consensus 834 ~ 834 (919)
.
T Consensus 190 ~ 190 (208)
T 2o6s_A 190 P 190 (208)
T ss_dssp T
T ss_pred C
Confidence 3
No 121
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.13 E-value=2.6e-10 Score=116.64 Aligned_cols=60 Identities=22% Similarity=0.180 Sum_probs=37.0
Q ss_pred CCCceeEEEceec-CCCCcchhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccc
Q 036584 785 CQCLVDLRLSGRM-KKLPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCH 845 (919)
Q Consensus 785 ~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~ 845 (919)
+++|+.|+|++|. ..+|..+..+ ++|+.|+|++|.+...+...+..+++|+.|+|.+|.+
T Consensus 111 l~~L~~L~Ls~N~l~~lp~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 111 LVHLKELFMCCNKLTELPRGIERL-THLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CTTCCEEECCSSCCCSCCTTGGGC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred chhhCeEeccCCcccccCcccccC-CCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 4444555554442 3456566555 7777777777777655555667777777777775543
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.13 E-value=1.1e-12 Score=152.55 Aligned_cols=215 Identities=16% Similarity=0.141 Sum_probs=133.5
Q ss_pred ccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCc-cccChhhhcCCCCcEEecCCCCCcccccCcc
Q 036584 608 ERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNI-GILPSSIVKLQRLQTLDFSGDVGCPVELPIE 686 (919)
Q Consensus 608 ~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i-~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~~ 686 (919)
..++.|+.|+|++ +. +. .+|..|++|.+|+.|++++|.. ..+|..+..+ + ....+|..
T Consensus 346 ~~~~~L~~L~Ls~-n~-----L~---~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~----------~--~~~~~~~~ 404 (567)
T 1dce_A 346 ATDEQLFRCELSV-EK-----ST---VLQSELESCKELQELEPENKWCLLTIILLMRAL----------D--PLLYEKET 404 (567)
T ss_dssp STTTTSSSCCCCH-HH-----HH---HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH----------C--TGGGHHHH
T ss_pred ccCccceeccCCh-hh-----HH---hhHHHHHHHHHHHHhccccchhhhhHHHHHHhc----------c--cccCCHHH
Confidence 5678899999999 88 87 8999999999999999977642 3333222111 1 23345556
Q ss_pred ccccccccccc-cccccccCCCCcCcCcccccccccccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcE
Q 036584 687 INMMQELRHLI-GNFKGTLPIENLTNLQTLKYVQSKSWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRF 765 (919)
Q Consensus 687 i~~L~~L~~L~-~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~ 765 (919)
+..|++|+.|. ... ..+++|+.+.+..+... .+. ...|+.|+++++... ..+ . +..+++|+.
T Consensus 405 l~~l~~L~~L~~l~~------n~~~~L~~l~l~~n~i~---~l~-~~~L~~L~Ls~n~l~---~lp---~-~~~l~~L~~ 467 (567)
T 1dce_A 405 LQYFSTLKAVDPMRA------AYLDDLRSKFLLENSVL---KME-YADVRVLHLAHKDLT---VLC---H-LEQLLLVTH 467 (567)
T ss_dssp HHHHHHHHHHCGGGH------HHHHHHHHHHHHHHHHH---HHH-HTTCSEEECTTSCCS---SCC---C-GGGGTTCCE
T ss_pred HHHHHhcccCcchhh------cccchhhhhhhhccccc---ccC-ccCceEEEecCCCCC---CCc---C-ccccccCcE
Confidence 66666666663 111 11223333333322211 111 124777777776422 211 3 677788888
Q ss_pred EEEeecCCCCccCcC-CCCCCCCceeEEEceec-CCCCcchhccCCCcceEEEEccCCCCCC-chhhhcCCCCCeEEEee
Q 036584 766 LSVKLLDANSFASLQ-PLSHCQCLVDLRLSGRM-KKLPEDMHVFLPNLECLSLSVPYPKEDP-MPALEMLPNLIILDLHF 842 (919)
Q Consensus 766 L~l~~~~~~~~~~~~-~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~-~~~l~~lp~L~~L~L~~ 842 (919)
|+|++ |.+..++ .++.+++|+.|+|++|. ..+| .+..+ ++|+.|+|++|.+++.. +..++.+++|+.|+|++
T Consensus 468 L~Ls~---N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l-~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 468 LDLSH---NRLRALPPALAALRCLEVLQASDNALENVD-GVANL-PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp EECCS---SCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTC-SSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred eecCc---ccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCC-CCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecC
Confidence 88754 3333332 36677888888888874 4566 66666 88888888888887665 77888888888888887
Q ss_pred ccccCeeEE--EcCCCCcccceeEE
Q 036584 843 RCHYVKKLG--CRAEGFPLLEILQL 865 (919)
Q Consensus 843 ~~~~~~~~~--~~~~~f~~L~~L~l 865 (919)
|.+...... .....+|+|+.|++
T Consensus 543 N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 543 NSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CcCCCCccHHHHHHHHCcccCccCC
Confidence 665432100 01123677877753
No 123
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.12 E-value=2e-10 Score=132.76 Aligned_cols=174 Identities=16% Similarity=0.123 Sum_probs=118.8
Q ss_pred ccceEEeecCCCccccChhhhcCCCCcEEecCCCCCcccccCcccccccccccccc---ccccccCCCCcCcCccccccc
Q 036584 643 IHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVELPIEINMMQELRHLIG---NFKGTLPIENLTNLQTLKYVQ 719 (919)
Q Consensus 643 ~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~L~~L~~---~~~~~~~i~~l~~L~~L~~~~ 719 (919)
.+|++|+|++|.++.+|..+ +++|++|+|++| .+..+| ..+++|++|.. .......+.. +|+.|++..
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N--~l~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQN--ALISLP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSS--CCSCCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhH--cCCCCEEECcCC--CCcccc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECCC
Confidence 38999999999999899877 489999999999 788999 45788888843 2222111333 788888777
Q ss_pred ccccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCcCCCCCCCCceeEEEceec-C
Q 036584 720 SKSWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASLQPLSHCQCLVDLRLSGRM-K 798 (919)
Q Consensus 720 ~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~ 798 (919)
|....+.. .+++|+.|+++++... ... . .+++|+.|+++++ .+..++.+. ++|+.|+|++|. .
T Consensus 130 N~l~~lp~--~l~~L~~L~Ls~N~l~---~lp---~---~l~~L~~L~Ls~N---~L~~lp~l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 130 NQLTMLPE--LPALLEYINADNNQLT---MLP---E---LPTSLEVLSVRNN---QLTFLPELP--ESLEALDVSTNLLE 193 (571)
T ss_dssp SCCSCCCC--CCTTCCEEECCSSCCS---CCC---C---CCTTCCEEECCSS---CCSCCCCCC--TTCCEEECCSSCCS
T ss_pred CcCCCCCC--cCccccEEeCCCCccC---cCC---C---cCCCcCEEECCCC---CCCCcchhh--CCCCEEECcCCCCC
Confidence 76332222 6778888888887532 111 2 4578888888543 333333332 788888888874 5
Q ss_pred CCCcchhccCCCc-------ceEEEEccCCCCCCchhhhcCCCCCeEEEeecccc
Q 036584 799 KLPEDMHVFLPNL-------ECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHY 846 (919)
Q Consensus 799 ~~p~~~~~l~~~L-------~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~ 846 (919)
.+|. +. .+| +.|+|++|.++ ..+..++.+++|+.|+|++|.+.
T Consensus 194 ~lp~-~~---~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 194 SLPA-VP---VRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp SCCC-CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCC
T ss_pred chhh-HH---HhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCC
Confidence 5665 32 355 88888888886 45566777888888888866553
No 124
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.11 E-value=3.4e-10 Score=115.21 Aligned_cols=180 Identities=14% Similarity=0.070 Sum_probs=115.2
Q ss_pred CCCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCC-CEEEEEEeCCCCCHHHHHHHHHHH
Q 036584 202 EENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKF-DYCAWVSVSQDYKIKDLLLRIIKS 280 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~il~~ 280 (919)
-.+++|+++.++.+.+++.... ...+.|+|++|+|||++|+.+++... ...+ ...+.+..+.......+
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~------- 85 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVV------- 85 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHH-------
T ss_pred HHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHH-------
Confidence 3568999999999999998764 33489999999999999999987421 1111 12334444333222221
Q ss_pred hcccccccccccCCHHHHHHHHHHHh------ccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecchhh-hh
Q 036584 281 FNIMTALEDLETKTEEDLARSLRKSL------EAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRIKDV-AE 351 (919)
Q Consensus 281 l~~~~~~~~~~~~~~~~~~~~l~~~l------~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~v-~~ 351 (919)
...+.... .+++.+||+||++.. ..++.+...+.....+.++|+||+.... ..
T Consensus 86 ------------------~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~ 147 (226)
T 2chg_A 86 ------------------RHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIE 147 (226)
T ss_dssp ------------------HHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCH
T ss_pred ------------------HHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCH
Confidence 11122211 256889999999764 3445555555444557788888876532 11
Q ss_pred hcCCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHHHH
Q 036584 352 RSDDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVLGG 411 (919)
Q Consensus 352 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~~~ 411 (919)
........+.+++++.++..+++.+.+...... -..+....|++.++|.|..+..+..
T Consensus 148 ~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 148 PIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhCceeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 111122588999999999999998876432221 1234667888999999986554433
No 125
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.08 E-value=4.5e-10 Score=114.02 Aligned_cols=52 Identities=13% Similarity=0.397 Sum_probs=32.6
Q ss_pred EEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccCh-hhhcCCCCcEEecCCC
Q 036584 614 RVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILPS-SIVKLQRLQTLDFSGD 676 (919)
Q Consensus 614 rvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~-~l~~L~~L~~L~L~~~ 676 (919)
+.+++++ +. +. .+|..+. .+|++|+|++|.|+.+|. .+..+++|++|+|++|
T Consensus 14 ~~v~c~~-~~-----l~---~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N 66 (220)
T 2v9t_B 14 NIVDCRG-KG-----LT---EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN 66 (220)
T ss_dssp TEEECTT-SC-----CS---SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS
T ss_pred CEEEcCC-CC-----cC---cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC
Confidence 3456665 55 55 5665544 566777777777766654 5666677777777766
No 126
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.05 E-value=4.1e-10 Score=123.86 Aligned_cols=58 Identities=14% Similarity=0.205 Sum_probs=32.3
Q ss_pred EEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccChh-hh-cCCCCcEEecCCCCCcccccC
Q 036584 614 RVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILPSS-IV-KLQRLQTLDFSGDVGCPVELP 684 (919)
Q Consensus 614 rvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~-l~-~L~~L~~L~L~~~~~~~~~lp 684 (919)
+++++++ +. +. .+|..+. ..|++|+|++|.|+.+|.. +. .+++|++|+|++| .+..+|
T Consensus 21 ~~l~c~~-~~-----l~---~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N--~i~~i~ 80 (361)
T 2xot_A 21 NILSCSK-QQ-----LP---NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN--HLNFIS 80 (361)
T ss_dssp TEEECCS-SC-----CS---SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS--CCCEEC
T ss_pred CEEEeCC-CC-----cC---ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC--cCCccC
Confidence 3556555 55 55 5555443 2456666666666555543 33 5666666666666 455444
No 127
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.05 E-value=5.7e-10 Score=113.20 Aligned_cols=58 Identities=21% Similarity=0.346 Sum_probs=36.6
Q ss_pred EEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccCh--hhhcCCCCcEEecCCCCCcccccC
Q 036584 614 RVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILPS--SIVKLQRLQTLDFSGDVGCPVELP 684 (919)
Q Consensus 614 rvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~--~l~~L~~L~~L~L~~~~~~~~~lp 684 (919)
+++++++ +. +. .+|..+. ..+++|+|++|.|+.++. .+..+++|++|++++| .+..+|
T Consensus 14 ~~l~~s~-n~-----l~---~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N--~i~~i~ 73 (220)
T 2v70_A 14 TTVDCSN-QK-----LN---KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN--KITDIE 73 (220)
T ss_dssp TEEECCS-SC-----CS---SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS--CCCEEC
T ss_pred CEeEeCC-CC-----cc---cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC--cCCEEC
Confidence 3667776 66 65 5665553 345677777777766632 3677777777777777 454444
No 128
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.03 E-value=6.9e-10 Score=111.66 Aligned_cols=104 Identities=22% Similarity=0.222 Sum_probs=64.1
Q ss_pred HHhhcCCCcEEEEeecCCCCccCcCC--CCCCCCceeEEEceec-CCCCcc-hhccCCCcceEEEEccCCCCCCchhhhc
Q 036584 756 SIAKLKNLRFLSVKLLDANSFASLQP--LSHCQCLVDLRLSGRM-KKLPED-MHVFLPNLECLSLSVPYPKEDPMPALEM 831 (919)
Q Consensus 756 ~l~~l~~L~~L~l~~~~~~~~~~~~~--l~~~~~L~~L~L~~~~-~~~p~~-~~~l~~~L~~L~L~~~~l~~~~~~~l~~ 831 (919)
.+..+++|+.|++++ +.+..+.. +..+++|++|++++|. ..+|.. +..+ ++|++|+|++|.++..+...+..
T Consensus 71 ~~~~l~~L~~L~Ls~---n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~ 146 (208)
T 2o6s_A 71 VFNKLTSLTYLNLST---NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKL-TQLKDLRLYQNQLKSVPDGVFDR 146 (208)
T ss_dssp TTTTCTTCCEEECCS---SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTT
T ss_pred hcCCCCCcCEEECCC---CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccC-CcCCEEECCCCccceeCHHHhcc
Confidence 345567777777743 33333332 5567788888887764 444443 3444 77888888888777555555777
Q ss_pred CCCCCeEEEeeccccCeeEEEcCCCCcccceeEEecCCcc
Q 036584 832 LPNLIILDLHFRCHYVKKLGCRAEGFPLLEILQLDADGLV 871 (919)
Q Consensus 832 lp~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~l~~~~l~ 871 (919)
+++|+.|+|++|.+. +.+++|+.|.++.++++
T Consensus 147 l~~L~~L~l~~N~~~--------~~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 147 LTSLQYIWLHDNPWD--------CTCPGIRYLSEWINKHS 178 (208)
T ss_dssp CTTCCEEECCSCCBC--------CCTTTTHHHHHHHHHCT
T ss_pred CCCccEEEecCCCee--------cCCCCHHHHHHHHHhCC
Confidence 778888877755332 34566666666633333
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.99 E-value=6.7e-10 Score=107.48 Aligned_cols=100 Identities=22% Similarity=0.240 Sum_probs=70.6
Q ss_pred CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccc-c
Q 036584 580 NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGI-L 658 (919)
Q Consensus 580 ~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~-L 658 (919)
.++++.|.+.++ ......+|..+..+++|++|++++ |. +. .+ ..++.+++|++|+|++|.+.. +
T Consensus 23 ~~~L~~L~l~~n-----~l~~~~i~~~~~~l~~L~~L~l~~-n~-----l~---~~-~~~~~l~~L~~L~Ls~N~l~~~~ 87 (168)
T 2ell_A 23 PAAVRELVLDNC-----KSNDGKIEGLTAEFVNLEFLSLIN-VG-----LI---SV-SNLPKLPKLKKLELSENRIFGGL 87 (168)
T ss_dssp TTSCSEEECCSC-----BCBTTBCSSCCGGGGGCCEEEEES-SC-----CC---CC-SSCCCCSSCCEEEEESCCCCSCC
T ss_pred cccCCEEECCCC-----CCChhhHHHHHHhCCCCCEEeCcC-CC-----CC---Ch-hhhccCCCCCEEECcCCcCchHH
Confidence 567777777777 222134566677788888888888 77 66 44 677888888888888888866 7
Q ss_pred ChhhhcCCCCcEEecCCCCCcccccC--cccccccccccc
Q 036584 659 PSSIVKLQRLQTLDFSGDVGCPVELP--IEINMMQELRHL 696 (919)
Q Consensus 659 P~~l~~L~~L~~L~L~~~~~~~~~lp--~~i~~L~~L~~L 696 (919)
|..+..+++|++|++++| .+..+| ..+..+++|++|
T Consensus 88 ~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~l~~l~~L~~L 125 (168)
T 2ell_A 88 DMLAEKLPNLTHLNLSGN--KLKDISTLEPLKKLECLKSL 125 (168)
T ss_dssp CHHHHHCTTCCEEECBSS--SCCSSGGGGGGSSCSCCCEE
T ss_pred HHHHhhCCCCCEEeccCC--ccCcchhHHHHhcCCCCCEE
Confidence 777777888888888888 666665 345555555544
No 130
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.96 E-value=1.6e-09 Score=110.68 Aligned_cols=101 Identities=24% Similarity=0.347 Sum_probs=80.8
Q ss_pred CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhhh-hcccccceEEeecCCCcccc
Q 036584 580 NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEK-IGDLIHLKYLGLRNSNIGIL 658 (919)
Q Consensus 580 ~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~-i~~L~~Lr~L~L~~~~i~~L 658 (919)
.++++.|.+.++. +....+..|..+++|++|+|++ +. +. .+|.. +..+++|++|+|++|.|+.+
T Consensus 39 ~~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~L~~-N~-----l~---~i~~~~~~~l~~L~~L~Ls~N~l~~l 103 (229)
T 3e6j_A 39 PTNAQILYLHDNQ------ITKLEPGVFDSLINLKELYLGS-NQ-----LG---ALPVGVFDSLTQLTVLDLGTNQLTVL 103 (229)
T ss_dssp CTTCSEEECCSSC------CCCCCTTTTTTCTTCCEEECCS-SC-----CC---CCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCEEEcCCCc------cCccCHHHhhCccCCcEEECCC-CC-----CC---CcChhhcccCCCcCEEECCCCcCCcc
Confidence 6888899988872 3345567788889999999998 77 76 66644 68889999999999999888
Q ss_pred Chh-hhcCCCCcEEecCCCCCcccccCccccccccccccc
Q 036584 659 PSS-IVKLQRLQTLDFSGDVGCPVELPIEINMMQELRHLI 697 (919)
Q Consensus 659 P~~-l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~L~~L~ 697 (919)
|.. +..+++|++|+|++| .+..+|..+..+++|++|.
T Consensus 104 ~~~~~~~l~~L~~L~Ls~N--~l~~lp~~~~~l~~L~~L~ 141 (229)
T 3e6j_A 104 PSAVFDRLVHLKELFMCCN--KLTELPRGIERLTHLTHLA 141 (229)
T ss_dssp CTTTTTTCTTCCEEECCSS--CCCSCCTTGGGCTTCSEEE
T ss_pred ChhHhCcchhhCeEeccCC--cccccCcccccCCCCCEEE
Confidence 765 688999999999998 7888888887777777773
No 131
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.95 E-value=1.8e-09 Score=109.50 Aligned_cols=101 Identities=22% Similarity=0.174 Sum_probs=59.8
Q ss_pred CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccC
Q 036584 580 NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILP 659 (919)
Q Consensus 580 ~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP 659 (919)
.+.++.|.+.++. +....+..|..+++|++|+|++ +. +.. ..|..+.++++|++|+|++|.|+.+|
T Consensus 31 ~~~l~~L~l~~n~------i~~i~~~~~~~l~~L~~L~Ls~-N~-----i~~--~~~~~~~~l~~L~~L~Ls~N~l~~l~ 96 (220)
T 2v9t_B 31 PETITEIRLEQNT------IKVIPPGAFSPYKKLRRIDLSN-NQ-----ISE--LAPDAFQGLRSLNSLVLYGNKITELP 96 (220)
T ss_dssp CTTCCEEECCSSC------CCEECTTSSTTCTTCCEEECCS-SC-----CCE--ECTTTTTTCSSCCEEECCSSCCCCCC
T ss_pred CcCCCEEECCCCc------CCCcCHhHhhCCCCCCEEECCC-Cc-----CCC--cCHHHhhCCcCCCEEECCCCcCCccC
Confidence 3566677766662 2223344566667777777777 66 551 23566677777777777777776666
Q ss_pred hh-hhcCCCCcEEecCCCCCcccccCc-ccccccccccc
Q 036584 660 SS-IVKLQRLQTLDFSGDVGCPVELPI-EINMMQELRHL 696 (919)
Q Consensus 660 ~~-l~~L~~L~~L~L~~~~~~~~~lp~-~i~~L~~L~~L 696 (919)
.. +..+++|++|+|++| .+..++. .+..+++|++|
T Consensus 97 ~~~f~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L 133 (220)
T 2v9t_B 97 KSLFEGLFSLQLLLLNAN--KINCLRVDAFQDLHNLNLL 133 (220)
T ss_dssp TTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEE
T ss_pred HhHccCCCCCCEEECCCC--CCCEeCHHHcCCCCCCCEE
Confidence 54 466777777777776 5555533 33334444433
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.95 E-value=4.7e-10 Score=106.19 Aligned_cols=99 Identities=22% Similarity=0.267 Sum_probs=51.0
Q ss_pred CcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccc-cC
Q 036584 581 SLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGI-LP 659 (919)
Q Consensus 581 ~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~-LP 659 (919)
++++.|.+.++ ......+|..+..+++|++|++++ |. +. .+ ..++.+++|++|+|++|.++. +|
T Consensus 17 ~~l~~L~l~~n-----~l~~~~~~~~~~~l~~L~~L~l~~-n~-----l~---~~-~~~~~l~~L~~L~Ls~n~i~~~~~ 81 (149)
T 2je0_A 17 SDVKELVLDNS-----RSNEGKLEGLTDEFEELEFLSTIN-VG-----LT---SI-ANLPKLNKLKKLELSDNRVSGGLE 81 (149)
T ss_dssp GGCSEEECTTC-----BCBTTBCCSCCTTCTTCCEEECTT-SC-----CC---CC-TTCCCCTTCCEEECCSSCCCSCTH
T ss_pred ccCeEEEccCC-----cCChhHHHHHHhhcCCCcEEECcC-CC-----CC---Cc-hhhhcCCCCCEEECCCCcccchHH
Confidence 44555555555 111123344455556666666665 55 44 33 445556666666666666644 55
Q ss_pred hhhhcCCCCcEEecCCCCCcccccC--cccccccccccc
Q 036584 660 SSIVKLQRLQTLDFSGDVGCPVELP--IEINMMQELRHL 696 (919)
Q Consensus 660 ~~l~~L~~L~~L~L~~~~~~~~~lp--~~i~~L~~L~~L 696 (919)
..+..+++|++|++++| .+..+| ..+..+++|++|
T Consensus 82 ~~~~~l~~L~~L~ls~N--~i~~~~~~~~~~~l~~L~~L 118 (149)
T 2je0_A 82 VLAEKCPNLTHLNLSGN--KIKDLSTIEPLKKLENLKSL 118 (149)
T ss_dssp HHHHHCTTCCEEECTTS--CCCSHHHHGGGGGCTTCCEE
T ss_pred HHhhhCCCCCEEECCCC--cCCChHHHHHHhhCCCCCEE
Confidence 55555666666666665 444443 344444444444
No 133
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.93 E-value=3e-09 Score=107.85 Aligned_cols=116 Identities=12% Similarity=0.041 Sum_probs=62.4
Q ss_pred EEEEecCCCCccccccCCCcccEEEEeccccccccccccc-chhhhccCceEEEEEeccCccccccccccchhhh-hhhc
Q 036584 563 RQAIYSHSPSYFWLHHGNSLARSLLLFNQWWDETLGVKRH-LPLLFERFFLLRVFDVEADLDRESTLMHWSNRLS-EKIG 640 (919)
Q Consensus 563 ~l~l~~~~~~~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~-l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp-~~i~ 640 (919)
.+.+..+....++ ....+.++.|.+.++. . ... .+..|..+++|++|+|++ +. +. .++ ..+.
T Consensus 15 ~l~~s~n~l~~iP-~~~~~~~~~L~L~~N~-----l-~~~~~~~~~~~l~~L~~L~L~~-N~-----i~---~i~~~~~~ 78 (220)
T 2v70_A 15 TVDCSNQKLNKIP-EHIPQYTAELRLNNNE-----F-TVLEATGIFKKLPQLRKINFSN-NK-----IT---DIEEGAFE 78 (220)
T ss_dssp EEECCSSCCSSCC-SCCCTTCSEEECCSSC-----C-CEECCCCCGGGCTTCCEEECCS-SC-----CC---EECTTTTT
T ss_pred EeEeCCCCcccCc-cCCCCCCCEEEcCCCc-----C-CccCchhhhccCCCCCEEECCC-Cc-----CC---EECHHHhC
Confidence 4444433333333 2224455666666662 1 111 123456666777777776 65 55 343 3566
Q ss_pred ccccceEEeecCCCccccCh-hhhcCCCCcEEecCCCCCccccc-Ccccccccccccc
Q 036584 641 DLIHLKYLGLRNSNIGILPS-SIVKLQRLQTLDFSGDVGCPVEL-PIEINMMQELRHL 696 (919)
Q Consensus 641 ~L~~Lr~L~L~~~~i~~LP~-~l~~L~~L~~L~L~~~~~~~~~l-p~~i~~L~~L~~L 696 (919)
.+.+|++|+|++|.|+.+|. .+..+++|++|+|++| .+..+ |..+..+++|++|
T Consensus 79 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L 134 (220)
T 2v70_A 79 GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN--RITCVGNDSFIGLSSVRLL 134 (220)
T ss_dssp TCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTS--CCCCBCTTSSTTCTTCSEE
T ss_pred CCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCC--cCCeECHhHcCCCccCCEE
Confidence 67777777777777755554 3666777777777766 55544 2334334443333
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.90 E-value=1.4e-09 Score=130.45 Aligned_cols=151 Identities=17% Similarity=0.070 Sum_probs=88.3
Q ss_pred CCCeeEEEEecCCCCccccccC-CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhh
Q 036584 558 ISSCRRQAIYSHSPSYFWLHHG-NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLS 636 (919)
Q Consensus 558 ~~~~r~l~l~~~~~~~~~~~~~-~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp 636 (919)
...++++.+..+.....+.... ..+|+.+.+..... ........+..+..++.|++|+|++ +. +. .+|
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~--~~n~~~~~~~~~~~l~~L~~L~Ls~-n~-----l~---~l~ 240 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDD--IENRMVMPKDSKYDDQLWHALDLSN-LQ-----IF---NIS 240 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTT-SC-----CS---CCC
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCccc--cccceecChhhhccCCCCcEEECCC-CC-----CC---CCC
Confidence 3557888886454444332211 33444444333200 0011225567788899999999999 88 77 788
Q ss_pred hhhcccccceEEeecCCCccccChhhhcCCCCcEEecCCCCCcccccCcccccccccccccc---cc-ccccCCCCcCcC
Q 036584 637 EKIGDLIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVELPIEINMMQELRHLIG---NF-KGTLPIENLTNL 712 (919)
Q Consensus 637 ~~i~~L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~L~~L~~---~~-~~~~~i~~l~~L 712 (919)
..++++.+|++|+|++|.|+.+|..+++|++|++|+|++| .+..+|..++.|++|++|.. .. ..|..++.|++|
T Consensus 241 ~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N--~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L 318 (727)
T 4b8c_D 241 ANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN--RLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNL 318 (727)
T ss_dssp GGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS--CCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTC
T ss_pred hhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC--cCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCc
Confidence 8899999999999999999999999999999999999999 78899999999999999842 22 344558888999
Q ss_pred ccccccccc
Q 036584 713 QTLKYVQSK 721 (919)
Q Consensus 713 ~~L~~~~~~ 721 (919)
+.|++..|.
T Consensus 319 ~~L~L~~N~ 327 (727)
T 4b8c_D 319 QFLGVEGNP 327 (727)
T ss_dssp CCEECTTSC
T ss_pred cEEeCCCCc
Confidence 999888776
No 135
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.90 E-value=5.4e-09 Score=113.05 Aligned_cols=185 Identities=17% Similarity=0.141 Sum_probs=113.8
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCC-CEEEEEEeCCCCCHHHHHHHHHHHh
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKF-DYCAWVSVSQDYKIKDLLLRIIKSF 281 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~il~~l 281 (919)
.+++|++..++.+.+++..+. .+.+.|+|++|+||||+|+.+++... ...+ ...++++.+..... +.+++++..+
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~ 96 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGI-DVVRNQIKHF 96 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSH-HHHHTHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccCh-HHHHHHHHHH
Confidence 569999999999999998754 33389999999999999999997421 1111 12334443332221 1122222221
Q ss_pred cccccccccccCCHHHHHHHHHHHh-ccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecchh-hhhhcCCCC
Q 036584 282 NIMTALEDLETKTEEDLARSLRKSL-EAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRIKD-VAERSDDRN 357 (919)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~~ 357 (919)
.... ..+ .+++.++|+||++.. +.++.+...+.....++.+|+||.... +........
T Consensus 97 ~~~~------------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~ 158 (323)
T 1sxj_B 97 AQKK------------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158 (323)
T ss_dssp HHBC------------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred Hhcc------------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence 1000 001 345889999999863 345555555444445678888876543 211111222
Q ss_pred ceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchH-HHHHHH
Q 036584 358 YVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLA-IVVLGG 411 (919)
Q Consensus 358 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLa-l~~~~~ 411 (919)
..+.+.+++.++..+++...+...... -..+.+..|++.++|.|.. +..+..
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDVK--YTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 589999999999999998876432221 1235677899999999954 444433
No 136
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.86 E-value=4.6e-09 Score=101.54 Aligned_cols=123 Identities=15% Similarity=0.067 Sum_probs=99.0
Q ss_pred CCCCeeEEEEecCCCC--ccccc-cCCCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccch
Q 036584 557 VISSCRRQAIYSHSPS--YFWLH-HGNSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSN 633 (919)
Q Consensus 557 ~~~~~r~l~l~~~~~~--~~~~~-~~~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~ 633 (919)
.+..+++|.+..+... .++.. ..+++|+.|.+.++. .... ..+..+++|++|+|++ |. +..
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~------l~~~--~~~~~l~~L~~L~Ls~-N~-----l~~-- 85 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG------LISV--SNLPKLPKLKKLELSE-NR-----IFG-- 85 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC------CCCC--SSCCCCSSCCEEEEES-CC-----CCS--
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC------CCCh--hhhccCCCCCEEECcC-Cc-----Cch--
Confidence 4578999999877665 44433 228999999999983 2222 5678899999999999 88 772
Q ss_pred hhhhhhcccccceEEeecCCCccccC--hhhhcCCCCcEEecCCCCCcccccCc----cccccccccccc
Q 036584 634 RLSEKIGDLIHLKYLGLRNSNIGILP--SSIVKLQRLQTLDFSGDVGCPVELPI----EINMMQELRHLI 697 (919)
Q Consensus 634 ~lp~~i~~L~~Lr~L~L~~~~i~~LP--~~l~~L~~L~~L~L~~~~~~~~~lp~----~i~~L~~L~~L~ 697 (919)
.+|..+..+++|++|+|++|.|+.+| ..+..+++|++|++++| .+..+|. .+..+++|++|.
T Consensus 86 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N--~l~~~~~~~~~~~~~l~~L~~L~ 153 (168)
T 2ell_A 86 GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC--EVTNLNDYRESVFKLLPQLTYLD 153 (168)
T ss_dssp CCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS--GGGTSTTHHHHHHTTCSSCCEET
T ss_pred HHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCC--cCcchHHHHHHHHHhCccCcEec
Confidence 37777888999999999999999887 68999999999999999 8888886 667777777774
No 137
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.84 E-value=2.8e-09 Score=100.76 Aligned_cols=123 Identities=15% Similarity=0.048 Sum_probs=98.7
Q ss_pred CCCCeeEEEEecCCCC--ccccc-cCCCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccch
Q 036584 557 VISSCRRQAIYSHSPS--YFWLH-HGNSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSN 633 (919)
Q Consensus 557 ~~~~~r~l~l~~~~~~--~~~~~-~~~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~ 633 (919)
.+.++++|.+..+... ..+.. ..+++++.|.+.++. . ... ..+..+++|++|+|++ |. +..
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-----l-~~~--~~~~~l~~L~~L~Ls~-n~-----i~~-- 78 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-----L-TSI--ANLPKLNKLKKLELSD-NR-----VSG-- 78 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-----C-CCC--TTCCCCTTCCEEECCS-SC-----CCS--
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-----C-CCc--hhhhcCCCCCEEECCC-Cc-----ccc--
Confidence 4567899999876665 34432 228999999999983 2 222 6678999999999999 88 772
Q ss_pred hhhhhhcccccceEEeecCCCccccC--hhhhcCCCCcEEecCCCCCcccccCc----cccccccccccc
Q 036584 634 RLSEKIGDLIHLKYLGLRNSNIGILP--SSIVKLQRLQTLDFSGDVGCPVELPI----EINMMQELRHLI 697 (919)
Q Consensus 634 ~lp~~i~~L~~Lr~L~L~~~~i~~LP--~~l~~L~~L~~L~L~~~~~~~~~lp~----~i~~L~~L~~L~ 697 (919)
.+|..++.+++|++|++++|.++.+| ..++.+++|++|++++| .+..+|. .+..+++|++|.
T Consensus 79 ~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N--~l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 79 GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC--EVTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp CTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC--GGGGSTTHHHHHHHHCTTCCEET
T ss_pred hHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC--cccchHHHHHHHHHHCCCccccc
Confidence 38888888999999999999998876 78999999999999999 7888876 577788887774
No 138
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.83 E-value=6.7e-09 Score=112.35 Aligned_cols=263 Identities=20% Similarity=0.109 Sum_probs=140.6
Q ss_pred CCCccccccCHHHHHHHHhcC---CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 036584 202 EENPVGFEDDTDLLLAKLLDK---EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRII 278 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 278 (919)
-.+++|++..++.+..++... ......|.|+|++|+|||++|+.+++. .... .++++.+......
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~~---~~~~~~~~~~~~~------- 78 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGVN---LRVTSGPAIEKPG------- 78 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHH--HTCC---EEEECTTTCCSHH-------
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHH--hCCC---EEEEeccccCChH-------
Confidence 357999999999888887631 223467889999999999999999973 2222 3344433222211
Q ss_pred HHhcccccccccccCCHHHHHHHHHHHhccCceEEEEecccchh--HHHHHHhhCCCC------------------CCCc
Q 036584 279 KSFNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHKE--DWVSLKSAFPEN------------------KIGS 338 (919)
Q Consensus 279 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~------------------~~gs 338 (919)
++...+...+ .++.+|+|||++... ....+...+... ..+.
T Consensus 79 ------------------~l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (324)
T 1hqc_A 79 ------------------DLAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 139 (324)
T ss_dssp ------------------HHHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCC
T ss_pred ------------------HHHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCE
Confidence 1111111111 346789999997542 333333222211 0234
Q ss_pred EEEEEecchh-hhhhcCCCC-ceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHHHHHhcCC
Q 036584 339 RVIITTRIKD-VAERSDDRN-YVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVLGGLLSTK 416 (919)
Q Consensus 339 ~iivTtr~~~-v~~~~~~~~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~~~~l~~~ 416 (919)
.+|.||.... +........ ..+.+.+++.++..+++.+.+...... -..+....|++.++|.|..+..+...+...
T Consensus 140 ~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~ 217 (324)
T 1hqc_A 140 TLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR--ITEEAALEIGRRSRGTMRVAKRLFRRVRDF 217 (324)
T ss_dssp EEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHSCSCHHHHHHHHHHHTTT
T ss_pred EEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 5666665432 211111111 578999999999999998876543322 123567889999999998887665544211
Q ss_pred ---------ChHHHHHHHHHHHHhhcCCchhhHHHHHhccccchHHHHHHHhHhc-CCCCC----------ceecHHHHH
Q 036584 417 ---------RPQEWREVRNHIWRHLRNDSIQVSYLLDLSFNDLSHQLKLCFLYLS-LFPED----------FVINVEKLI 476 (919)
Q Consensus 417 ---------~~~~w~~~~~~~~~~l~~~~~~i~~~l~~sy~~L~~~~k~c~~~~s-~fp~~----------~~i~~~~li 476 (919)
+.+....+.... ...+..++...+..+..+. .|..+ ..+++..+.
T Consensus 218 a~~~~~~~i~~~~~~~~~~~~---------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~ 282 (324)
T 1hqc_A 218 AQVAGEEVITRERALEALAAL---------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLE 282 (324)
T ss_dssp STTTSCSCCCHHHHHHHHHHH---------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHh---------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHH
Confidence 233333333221 1122334433333333222 12111 012233322
Q ss_pred H----HHHHcCCccc-CCCCCHHHHHHHHHH-HHHHcccccc
Q 036584 477 R----LLVAEGFIRQ-DEDRTMEEVAKDILD-ELINRSLIQV 512 (919)
Q Consensus 477 ~----~w~aeg~i~~-~~~~~~e~~~~~~l~-~L~~~sll~~ 512 (919)
+ +-+..|++.. ..+....+.|.+||. ++.+|+|||+
T Consensus 283 ~~l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 283 EVHEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HHTHHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHHhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 2 2445677743 345566677788876 7777887774
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.82 E-value=3.3e-09 Score=103.42 Aligned_cols=98 Identities=20% Similarity=0.145 Sum_probs=59.8
Q ss_pred CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccC
Q 036584 580 NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILP 659 (919)
Q Consensus 580 ~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP 659 (919)
+.+++.|.+.++. . . .++.....++.|++|+|++ |. +. .+ ..++.+++|++|+|++|.|+.+|
T Consensus 18 ~~~L~~L~l~~n~-----l-~-~i~~~~~~~~~L~~L~Ls~-N~-----l~---~~-~~l~~l~~L~~L~Ls~N~l~~~~ 80 (176)
T 1a9n_A 18 AVRDRELDLRGYK-----I-P-VIENLGATLDQFDAIDFSD-NE-----IR---KL-DGFPLLRRLKTLLVNNNRICRIG 80 (176)
T ss_dssp TTSCEEEECTTSC-----C-C-SCCCGGGGTTCCSEEECCS-SC-----CC---EE-CCCCCCSSCCEEECCSSCCCEEC
T ss_pred cCCceEEEeeCCC-----C-c-hhHHhhhcCCCCCEEECCC-CC-----CC---cc-cccccCCCCCEEECCCCcccccC
Confidence 5566666666662 1 1 2233333333777777777 66 65 44 46677777777777777777776
Q ss_pred hhh-hcCCCCcEEecCCCCCcccccCc--ccccccccccc
Q 036584 660 SSI-VKLQRLQTLDFSGDVGCPVELPI--EINMMQELRHL 696 (919)
Q Consensus 660 ~~l-~~L~~L~~L~L~~~~~~~~~lp~--~i~~L~~L~~L 696 (919)
..+ ..+++|++|++++| .+..+|. .+..+++|++|
T Consensus 81 ~~~~~~l~~L~~L~L~~N--~i~~~~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 81 EGLDQALPDLTELILTNN--SLVELGDLDPLASLKSLTYL 118 (176)
T ss_dssp SCHHHHCTTCCEEECCSC--CCCCGGGGGGGGGCTTCCEE
T ss_pred cchhhcCCCCCEEECCCC--cCCcchhhHhhhcCCCCCEE
Confidence 554 67777777777777 5666665 44445555444
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.78 E-value=1.5e-08 Score=109.87 Aligned_cols=219 Identities=13% Similarity=0.070 Sum_probs=98.7
Q ss_pred cccceEEeecCCCccccCh-hhhcCCCCcEEecCCCCCcccccCcc-ccccccccccccccccccCCCCcCcCccccccc
Q 036584 642 LIHLKYLGLRNSNIGILPS-SIVKLQRLQTLDFSGDVGCPVELPIE-INMMQELRHLIGNFKGTLPIENLTNLQTLKYVQ 719 (919)
Q Consensus 642 L~~Lr~L~L~~~~i~~LP~-~l~~L~~L~~L~L~~~~~~~~~lp~~-i~~L~~L~~L~~~~~~~~~i~~l~~L~~L~~~~ 719 (919)
+.+|+.|+|.. .++.++. .+..|++|+.|++++| .+..++.. +..+.++..+....... .....
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n--~i~~i~~~aF~~~~~l~~l~~~~~~~--~~~~~--------- 165 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK--TAPNLLPEALADSVTAIFIPLGSSDA--YRFKN--------- 165 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS--SCCEECTTSSCTTTCEEEECTTCTHH--HHTST---------
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCC--CccccchhhhcCCCceEEecCcchhh--hhccc---------
Confidence 78888888887 7777766 4778888888888877 56566653 33444444442110000 00000
Q ss_pred ccccchhhccCCCCCC-eEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCcCCC-CCCCCceeEEEcee-
Q 036584 720 SKSWNKVNTAKLVNLR-DLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASLQPL-SHCQCLVDLRLSGR- 796 (919)
Q Consensus 720 ~~~~~~~~l~~l~~L~-~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~L~~~- 796 (919)
......+..+.+|+ .+.+..... ..... +..-....++..+.+.+.-.. . ....+ ..+++|+.|+|.++
T Consensus 166 --~i~~~~f~~~~~L~~~i~~~~~~~--l~~~~--~~~~~~~~~~~~l~~~~~l~~-~-~~~~l~~~~~~L~~l~L~~n~ 237 (329)
T 3sb4_A 166 --RWEHFAFIEGEPLETTIQVGAMGK--LEDEI--MKAGLQPRDINFLTIEGKLDN-A-DFKLIRDYMPNLVSLDISKTN 237 (329)
T ss_dssp --TTTTSCEEESCCCEEEEEECTTCC--HHHHH--HHTTCCGGGCSEEEEEECCCH-H-HHHHHHHHCTTCCEEECTTBC
T ss_pred --cccccccccccccceeEEecCCCc--HHHHH--hhcccCccccceEEEeeeecH-H-HHHHHHHhcCCCeEEECCCCC
Confidence 00111122223333 222221110 00000 000011234444444321000 0 00001 12456666666654
Q ss_pred cCCCCcchhccCCCcceEEEEccCCCCCCchhhhcCCCCC-eEEEeeccccCeeEE-EcCCCCcccceeEEecCCcccEE
Q 036584 797 MKKLPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLI-ILDLHFRCHYVKKLG-CRAEGFPLLEILQLDADGLVEWQ 874 (919)
Q Consensus 797 ~~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~-~L~L~~~~~~~~~~~-~~~~~f~~L~~L~l~~~~l~~~~ 874 (919)
...+|...+.-+++|+.|+|.+| +......++..+++|+ .|.|. +. ...+. ..+.++++|+.|.+..++++.++
T Consensus 238 i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~-~~--l~~I~~~aF~~c~~L~~l~l~~n~i~~I~ 313 (329)
T 3sb4_A 238 ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELP-AS--VTAIEFGAFMGCDNLRYVLATGDKITTLG 313 (329)
T ss_dssp CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEEC-TT--CCEECTTTTTTCTTEEEEEECSSCCCEEC
T ss_pred cceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEc-cc--ceEEchhhhhCCccCCEEEeCCCccCccc
Confidence 34455544433466666666665 4444445566666676 66666 22 12221 23345566666666655666553
Q ss_pred Ec-cCCcccccce
Q 036584 875 VE-EGAMPVLRGL 886 (919)
Q Consensus 875 ~~-~~~~p~L~~L 886 (919)
.. ...+++|+.|
T Consensus 314 ~~aF~~~~~L~~l 326 (329)
T 3sb4_A 314 DELFGNGVPSKLI 326 (329)
T ss_dssp TTTTCTTCCCCEE
T ss_pred hhhhcCCcchhhh
Confidence 21 1234445444
No 141
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.76 E-value=8e-09 Score=113.49 Aligned_cols=163 Identities=18% Similarity=0.128 Sum_probs=88.6
Q ss_pred EEEEecCCCCccccccCCCcccEEEEecccccccccccccchhhhc-cCceEEEEEeccCccccccccccchhhh-hhhc
Q 036584 563 RQAIYSHSPSYFWLHHGNSLARSLLLFNQWWDETLGVKRHLPLLFE-RFFLLRVFDVEADLDRESTLMHWSNRLS-EKIG 640 (919)
Q Consensus 563 ~l~l~~~~~~~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~l~~~~~-~~~~LrvL~L~~~~~~~~~~i~~~~~lp-~~i~ 640 (919)
.+....+....++ ....+.++.|.+.++. +....+..|. .+++|++|+|++ +. +. .++ ..+.
T Consensus 22 ~l~c~~~~l~~iP-~~~~~~l~~L~Ls~N~------l~~l~~~~~~~~l~~L~~L~L~~-N~-----i~---~i~~~~~~ 85 (361)
T 2xot_A 22 ILSCSKQQLPNVP-QSLPSYTALLDLSHNN------LSRLRAEWTPTRLTNLHSLLLSH-NH-----LN---FISSEAFV 85 (361)
T ss_dssp EEECCSSCCSSCC-SSCCTTCSEEECCSSC------CCEECTTSSSSCCTTCCEEECCS-SC-----CC---EECTTTTT
T ss_pred EEEeCCCCcCccC-ccCCCCCCEEECCCCC------CCccChhhhhhcccccCEEECCC-Cc-----CC---ccChhhcc
Confidence 4444433333333 2224556777777762 2223344455 677777777777 66 65 443 4577
Q ss_pred ccccceEEeecCCCccccCh-hhhcCCCCcEEecCCCCCccccc-Cccccccccccccccc---cc-cccC-C---CCcC
Q 036584 641 DLIHLKYLGLRNSNIGILPS-SIVKLQRLQTLDFSGDVGCPVEL-PIEINMMQELRHLIGN---FK-GTLP-I---ENLT 710 (919)
Q Consensus 641 ~L~~Lr~L~L~~~~i~~LP~-~l~~L~~L~~L~L~~~~~~~~~l-p~~i~~L~~L~~L~~~---~~-~~~~-i---~~l~ 710 (919)
++++|++|+|++|.|+.+|. .+..+++|++|+|++| .+..+ |..+..+++|++|... .. .+.. + ..++
T Consensus 86 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N--~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~ 163 (361)
T 2xot_A 86 PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN--HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP 163 (361)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS--CCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CT
T ss_pred CCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCC--cccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCC
Confidence 77777777777777766655 4677777777777777 55555 3456666666666321 11 1111 1 3455
Q ss_pred cCccccccccc--ccchhhccCCCC--CCeEEeeecC
Q 036584 711 NLQTLKYVQSK--SWNKVNTAKLVN--LRDLHIEEDE 743 (919)
Q Consensus 711 ~L~~L~~~~~~--~~~~~~l~~l~~--L~~L~i~~~~ 743 (919)
+|+.|++..+. ......+..++. ++.|.+.++.
T Consensus 164 ~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 164 KLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp TCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred cCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 55555555554 122233444443 2455555543
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.75 E-value=4.8e-10 Score=111.77 Aligned_cols=133 Identities=18% Similarity=0.176 Sum_probs=85.6
Q ss_pred cchhhhccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccChhhhcCCCCcEEecCCCCCccc
Q 036584 602 HLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPV 681 (919)
Q Consensus 602 ~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~ 681 (919)
.++..+..+++|++|+|++ +. +. .+| .++.+++|++|+|++|.++.+|..+..+++|++|++++| .+.
T Consensus 39 ~l~~~~~~l~~L~~L~ls~-n~-----l~---~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N--~l~ 106 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALST-NN-----IE---KIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN--QIA 106 (198)
T ss_dssp CCHHHHHHTTTCSEEECSE-EE-----ES---CCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE--ECC
T ss_pred hhhHHHhcCCCCCEEECCC-CC-----Cc---ccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC--cCC
Confidence 4555777788888888888 77 76 576 777888888888888888888877777788888888888 666
Q ss_pred ccCccccccccccccccccccccCCCCcCcCccccccccccc---chhhccCCCCCCeEEeeecCccccc------cccc
Q 036584 682 ELPIEINMMQELRHLIGNFKGTLPIENLTNLQTLKYVQSKSW---NKVNTAKLVNLRDLHIEEDEDEWEG------ETVF 752 (919)
Q Consensus 682 ~lp~~i~~L~~L~~L~~~~~~~~~i~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~i~~~~~~~~~------~~~~ 752 (919)
.+| .+..+++|++|. +..+... ....+..+++|+.|++.++...... ...
T Consensus 107 ~l~-~~~~l~~L~~L~-------------------l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~- 165 (198)
T 1ds9_A 107 SLS-GIEKLVNLRVLY-------------------MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEY- 165 (198)
T ss_dssp CHH-HHHHHHHSSEEE-------------------ESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHH-
T ss_pred cCC-ccccCCCCCEEE-------------------CCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHH-
Confidence 666 466666666553 3332211 1134566677777777766421000 011
Q ss_pred hhhHHhhcCCCcEEE
Q 036584 753 SFESIAKLKNLRFLS 767 (919)
Q Consensus 753 ~~~~l~~l~~L~~L~ 767 (919)
....+..+++|+.|+
T Consensus 166 ~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 166 RIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHCSSCSEEC
T ss_pred HHHHHHhCCCcEEEC
Confidence 113466777777775
No 143
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.74 E-value=1e-08 Score=99.95 Aligned_cols=122 Identities=16% Similarity=0.025 Sum_probs=97.5
Q ss_pred CCCCeeEEEEecCCCCccccccC-CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhh
Q 036584 557 VISSCRRQAIYSHSPSYFWLHHG-NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRL 635 (919)
Q Consensus 557 ~~~~~r~l~l~~~~~~~~~~~~~-~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~l 635 (919)
.+.+++.|.+..+....++.-.. .++|+.|.+.++. . . .+ ..+..+++|++|+|++ |. +. .+
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~-----l-~-~~-~~l~~l~~L~~L~Ls~-N~-----l~---~~ 79 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE-----I-R-KL-DGFPLLRRLKTLLVNN-NR-----IC---RI 79 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSC-----C-C-EE-CCCCCCSSCCEEECCS-SC-----CC---EE
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCC-----C-C-cc-cccccCCCCCEEECCC-Cc-----cc---cc
Confidence 45678999999777665532222 4599999999983 2 1 12 4678899999999999 88 87 67
Q ss_pred hhhh-cccccceEEeecCCCccccCh--hhhcCCCCcEEecCCCCCcccccCcc----ccccccccccc
Q 036584 636 SEKI-GDLIHLKYLGLRNSNIGILPS--SIVKLQRLQTLDFSGDVGCPVELPIE----INMMQELRHLI 697 (919)
Q Consensus 636 p~~i-~~L~~Lr~L~L~~~~i~~LP~--~l~~L~~L~~L~L~~~~~~~~~lp~~----i~~L~~L~~L~ 697 (919)
|..+ +.+++|++|+|++|.|+.+|. .+..+++|++|++++| .+..+|.. +..+++|+.|+
T Consensus 80 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N--~i~~~~~~~~~~~~~l~~L~~Ld 146 (176)
T 1a9n_A 80 GEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN--PVTNKKHYRLYVIYKVPQVRVLD 146 (176)
T ss_dssp CSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS--GGGGSTTHHHHHHHHCTTCSEET
T ss_pred CcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCC--CCCCcHhHHHHHHHHCCccceeC
Confidence 7555 899999999999999999998 8999999999999999 78888875 66677766663
No 144
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.73 E-value=1.7e-09 Score=129.76 Aligned_cols=108 Identities=22% Similarity=0.192 Sum_probs=86.9
Q ss_pred hhhhhhcccccceEEeecCCCccccChhhhcCCCCcEEecCCCCCcccccCcccccccccccccc---cc-ccccCCCCc
Q 036584 634 RLSEKIGDLIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVELPIEINMMQELRHLIG---NF-KGTLPIENL 709 (919)
Q Consensus 634 ~lp~~i~~L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~L~~L~~---~~-~~~~~i~~l 709 (919)
..|..+..+.+|++|+|++|.+..+|..+..+++|++|+|++| .+..+|..+.+|++|++|.. .. ..|..++.|
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N--~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l 292 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGN--SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSC 292 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTS--CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGG
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCC--cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCC
Confidence 4567789999999999999999999999999999999999999 78899999999999999942 22 345558889
Q ss_pred CcCccccccccc-ccchhhccCCCCCCeEEeeecC
Q 036584 710 TNLQTLKYVQSK-SWNKVNTAKLVNLRDLHIEEDE 743 (919)
Q Consensus 710 ~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~i~~~~ 743 (919)
++|+.|++..|. ...+..++.+++|+.|+++++.
T Consensus 293 ~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 293 FQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp TTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred CCCCEEECCCCCCCccChhhhcCCCccEEeCCCCc
Confidence 999999988887 4344568889999999998876
No 145
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.72 E-value=2.1e-08 Score=108.57 Aligned_cols=185 Identities=15% Similarity=0.095 Sum_probs=114.8
Q ss_pred CCCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCC-CEEEEEEeCCCCCHHHHHHHHHHH
Q 036584 202 EENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKF-DYCAWVSVSQDYKIKDLLLRIIKS 280 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~il~~ 280 (919)
-.+++|+++.++.+..++..+. ...+.|+|++|+||||+|+.+++... ...+ ...+.+..+..... ..++..+
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~-~~~~~~~-- 97 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGI-NVIREKV-- 97 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHH-HTTHHHH--
T ss_pred HHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCch-HHHHHHH--
Confidence 3569999999999999998764 34589999999999999999997411 1111 11333333321000 0011111
Q ss_pred hcccccccccccCCHHHHHHHHHHH--h-ccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecchhh-hhhcC
Q 036584 281 FNIMTALEDLETKTEEDLARSLRKS--L-EAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRIKDV-AERSD 354 (919)
Q Consensus 281 l~~~~~~~~~~~~~~~~~~~~l~~~--l-~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~v-~~~~~ 354 (919)
...... + .+++.++|+||++.. +.++.+...+.....++++|+||..... .....
T Consensus 98 -------------------~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 158 (327)
T 1iqp_A 98 -------------------KEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ 158 (327)
T ss_dssp -------------------HHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred -------------------HHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHH
Confidence 111110 1 256789999999854 4556666555444557788888865431 11111
Q ss_pred CCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHHHHHh
Q 036584 355 DRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVLGGLL 413 (919)
Q Consensus 355 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~~~~l 413 (919)
.....+.+.+++.++..+++...+...... -..+....|++.++|.|..+..+...+
T Consensus 159 sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 159 SRCAIFRFRPLRDEDIAKRLRYIAENEGLE--LTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp HTEEEEECCCCCHHHHHHHHHHHHHTTTCE--ECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhCcEEEecCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 112578999999999999998876543321 223567789999999998765554443
No 146
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.66 E-value=1.7e-07 Score=98.79 Aligned_cols=170 Identities=11% Similarity=-0.011 Sum_probs=105.8
Q ss_pred CccccccCHHHHHHHHhcC--CCCcEEEEEEecCCchHHHHHHHHHcccCccC------CCCEEEEEEeCCCCCHHHHHH
Q 036584 204 NPVGFEDDTDLLLAKLLDK--EQRRLVISIYGMGGLGKTTLARKLYHNNDVKN------KFDYCAWVSVSQDYKIKDLLL 275 (919)
Q Consensus 204 ~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~------~f~~~~wv~~~~~~~~~~~~~ 275 (919)
.+.|||++++.|...|... ......+.|+|++|+|||++|+.|+++..... .| ..+.|+.....+...++.
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~~~ 99 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDALYE 99 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHHHH
Confidence 4889999999999888763 34567889999999999999999998532111 12 366777777788889999
Q ss_pred HHHHHhcccccccccccCCHHHHHHHHHHH--hccCceEEEEecccchhHHHHHHhhC--C-CCCCCcEEEEEecchhh-
Q 036584 276 RIIKSFNIMTALEDLETKTEEDLARSLRKS--LEAYSYLMVIDDIWHKEDWVSLKSAF--P-ENKIGSRVIITTRIKDV- 349 (919)
Q Consensus 276 ~il~~l~~~~~~~~~~~~~~~~~~~~l~~~--l~~~~~LlVlDdv~~~~~~~~l~~~l--~-~~~~gs~iivTtr~~~v- 349 (919)
.|.+++.+... ......+.+...+... -.+++++++||+++....-+.+...+ + .......||.++...+.
T Consensus 100 ~I~~~L~g~~~---~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 100 KIWFAISKENL---CGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHHSCCC-----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred HHHHHhcCCCC---CchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 99999965321 1122233333333321 24567999999997642212222221 1 11112233333433221
Q ss_pred --------hhhcCCCCceEecCCCChHhHHHHHHHHhc
Q 036584 350 --------AERSDDRNYVHELRFLRQDESWQLFCERAF 379 (919)
Q Consensus 350 --------~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 379 (919)
...+. ...+.+++++.++-.+++.+++.
T Consensus 177 ~~~L~~~v~SR~~--~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 177 REQINIMPSLKAH--FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHHHTCHHHHTT--EEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhhcchhhhccCC--ceEEEeCCCCHHHHHHHHHHHHH
Confidence 11221 14789999999999999998864
No 147
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.65 E-value=3e-08 Score=98.08 Aligned_cols=63 Identities=19% Similarity=0.274 Sum_probs=34.7
Q ss_pred eEEEEEeccCccccccccccchhhhhh--hcccccceEEeecCCCcccc-ChhhhcCCCCcEEecCCCCCcccccCc
Q 036584 612 LLRVFDVEADLDRESTLMHWSNRLSEK--IGDLIHLKYLGLRNSNIGIL-PSSIVKLQRLQTLDFSGDVGCPVELPI 685 (919)
Q Consensus 612 ~LrvL~L~~~~~~~~~~i~~~~~lp~~--i~~L~~Lr~L~L~~~~i~~L-P~~l~~L~~L~~L~L~~~~~~~~~lp~ 685 (919)
.|++|+|++ +. +. .++.. ++.+++|++|+|++|.|+.+ |..+..+++|++|+|++| .+..+|.
T Consensus 30 ~l~~L~l~~-n~-----i~---~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~ 95 (192)
T 1w8a_A 30 HTTELLLND-NE-----LG---RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN--KIKEISN 95 (192)
T ss_dssp TCSEEECCS-CC-----CC---SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC--CCCEECS
T ss_pred CCCEEECCC-Cc-----CC---ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC--cCCccCH
Confidence 555666666 55 44 44432 55566666666666666444 445566666666666665 4444443
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.65 E-value=7.4e-10 Score=110.41 Aligned_cols=130 Identities=18% Similarity=0.176 Sum_probs=95.3
Q ss_pred hhhhhhcccccceEEeecCCCccccChhhhcCCCCcEEecCCCCCcccccCccccccccccccccccccccCCCCcCcCc
Q 036584 634 RLSEKIGDLIHLKYLGLRNSNIGILPSSIVKLQRLQTLDFSGDVGCPVELPIEINMMQELRHLIGNFKGTLPIENLTNLQ 713 (919)
Q Consensus 634 ~lp~~i~~L~~Lr~L~L~~~~i~~LP~~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~i~~l~~L~ 713 (919)
.+|..++.+++|++|+|++|.++.+| .+..+++|++|++++| .+..+|..+..+++|+.|.
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n--~l~~l~~~~~~~~~L~~L~---------------- 99 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN--LIKKIENLDAVADTLEELW---------------- 99 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE--EECSCSSHHHHHHHCSEEE----------------
T ss_pred hhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC--CcccccchhhcCCcCCEEE----------------
Confidence 56668999999999999999998899 8999999999999999 7888888776666666663
Q ss_pred ccccccccccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCc------------CC
Q 036584 714 TLKYVQSKSWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASL------------QP 781 (919)
Q Consensus 714 ~L~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~------------~~ 781 (919)
+..+.......+..+++|+.|+++++... ... ....+..+++|+.|++.++ .+... ..
T Consensus 100 ---L~~N~l~~l~~~~~l~~L~~L~l~~N~i~---~~~-~~~~l~~l~~L~~L~l~~N---~l~~~~~~~~~~~~~~~~~ 169 (198)
T 1ds9_A 100 ---ISYNQIASLSGIEKLVNLRVLYMSNNKIT---NWG-EIDKLAALDKLEDLLLAGN---PLYNDYKENNATSEYRIEV 169 (198)
T ss_dssp ---EEEEECCCHHHHHHHHHSSEEEESEEECC---CHH-HHHHHTTTTTCSEEEECSC---HHHHHHHTTTTHHHHHHHH
T ss_pred ---CcCCcCCcCCccccCCCCCEEECCCCcCC---chh-HHHHHhcCCCCCEEEecCC---ccccccccccchHHHHHHH
Confidence 33333222335677889999999998532 111 1146788999999999643 33211 11
Q ss_pred CCCCCCceeEE
Q 036584 782 LSHCQCLVDLR 792 (919)
Q Consensus 782 l~~~~~L~~L~ 792 (919)
+..+++|+.|+
T Consensus 170 ~~~l~~L~~Ld 180 (198)
T 1ds9_A 170 VKRLPNLKKLD 180 (198)
T ss_dssp HHHCSSCSEEC
T ss_pred HHhCCCcEEEC
Confidence 55688999886
No 149
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.64 E-value=6.6e-08 Score=95.58 Aligned_cols=75 Identities=20% Similarity=0.270 Sum_probs=42.8
Q ss_pred ceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccCh-hhhcCCCCcEEecCCCCCcccccCc-ccc
Q 036584 611 FLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILPS-SIVKLQRLQTLDFSGDVGCPVELPI-EIN 688 (919)
Q Consensus 611 ~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~-~l~~L~~L~~L~L~~~~~~~~~lp~-~i~ 688 (919)
+.|++|+|++ +. +. .+|..+.++.+|++|+|++|.|+.+|. .+..+++|++|+|++| .+..+|. .+.
T Consensus 31 ~~l~~L~L~~-n~-----i~---~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N--~l~~i~~~~f~ 99 (193)
T 2wfh_A 31 RDVTELYLDG-NQ-----FT---LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN--RLRCIPPRTFD 99 (193)
T ss_dssp TTCCEEECCS-SC-----CC---SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CCCBCCTTTTT
T ss_pred CCCCEEECCC-Cc-----Cc---hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC--ccCEeCHHHhC
Confidence 3566666666 55 55 566666666666666666666655543 4666666666666666 5555543 233
Q ss_pred cccccccc
Q 036584 689 MMQELRHL 696 (919)
Q Consensus 689 ~L~~L~~L 696 (919)
.+++|++|
T Consensus 100 ~l~~L~~L 107 (193)
T 2wfh_A 100 GLKSLRLL 107 (193)
T ss_dssp TCTTCCEE
T ss_pred CCCCCCEE
Confidence 33333333
No 150
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.63 E-value=3.8e-08 Score=97.28 Aligned_cols=118 Identities=16% Similarity=0.127 Sum_probs=86.8
Q ss_pred eEEEEecCCCCccccccCCCcccEEEEecccccccccccccch-hhhccCceEEEEEeccCccccccccccchhhhhhhc
Q 036584 562 RRQAIYSHSPSYFWLHHGNSLARSLLLFNQWWDETLGVKRHLP-LLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIG 640 (919)
Q Consensus 562 r~l~l~~~~~~~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~l~-~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~ 640 (919)
+.+.+..+....++ .....+++.|.+.++. +....+ ..|..+++|++|+|++ +. +.. ..|..+.
T Consensus 11 ~~l~~s~~~l~~ip-~~~~~~l~~L~l~~n~------i~~~~~~~~~~~l~~L~~L~Ls~-N~-----l~~--~~~~~~~ 75 (192)
T 1w8a_A 11 TTVDCTGRGLKEIP-RDIPLHTTELLLNDNE------LGRISSDGLFGRLPHLVKLELKR-NQ-----LTG--IEPNAFE 75 (192)
T ss_dssp TEEECTTSCCSSCC-SCCCTTCSEEECCSCC------CCSBCCSCSGGGCTTCCEEECCS-SC-----CCC--BCTTTTT
T ss_pred CEEEcCCCCcCcCc-cCCCCCCCEEECCCCc------CCccCCccccccCCCCCEEECCC-CC-----CCC--cCHhHcC
Confidence 45555544444444 2335689999998882 222333 2578999999999999 88 772 3478899
Q ss_pred ccccceEEeecCCCccccCh-hhhcCCCCcEEecCCCCCccccc-Ccccccccccccc
Q 036584 641 DLIHLKYLGLRNSNIGILPS-SIVKLQRLQTLDFSGDVGCPVEL-PIEINMMQELRHL 696 (919)
Q Consensus 641 ~L~~Lr~L~L~~~~i~~LP~-~l~~L~~L~~L~L~~~~~~~~~l-p~~i~~L~~L~~L 696 (919)
.+++|++|+|++|.|+.+|. .+..+++|++|+|++| .+..+ |..+..+++|++|
T Consensus 76 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 76 GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN--QISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp TCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSS--CCCEECTTSSTTCTTCCEE
T ss_pred CcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC--cCCeeCHHHhhcCCCCCEE
Confidence 99999999999999977766 4889999999999999 66655 5566666666666
No 151
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.61 E-value=7.2e-08 Score=95.30 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=88.3
Q ss_pred EEEEecCCCCccccccCCCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhh-hhhcc
Q 036584 563 RQAIYSHSPSYFWLHHGNSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLS-EKIGD 641 (919)
Q Consensus 563 ~l~l~~~~~~~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp-~~i~~ 641 (919)
.+.+..+....++ ....++++.|.+.++. . ..+|..|..+++|++|+|++ +. +. .++ ..+.+
T Consensus 14 ~l~~~~~~l~~ip-~~~~~~l~~L~L~~n~-----i--~~ip~~~~~l~~L~~L~Ls~-N~-----i~---~i~~~~f~~ 76 (193)
T 2wfh_A 14 VVRCSNKGLKVLP-KGIPRDVTELYLDGNQ-----F--TLVPKELSNYKHLTLIDLSN-NR-----IS---TLSNQSFSN 76 (193)
T ss_dssp EEECTTSCCSSCC-SCCCTTCCEEECCSSC-----C--CSCCGGGGGCTTCCEEECCS-SC-----CC---CCCTTTTTT
T ss_pred EEEcCCCCCCcCC-CCCCCCCCEEECCCCc-----C--chhHHHhhcccCCCEEECCC-Cc-----CC---EeCHhHccC
Confidence 3444434444444 2236789999999882 2 25567889999999999999 88 77 554 56899
Q ss_pred cccceEEeecCCCccccCh-hhhcCCCCcEEecCCCCCcccccCcc-cccccccccc
Q 036584 642 LIHLKYLGLRNSNIGILPS-SIVKLQRLQTLDFSGDVGCPVELPIE-INMMQELRHL 696 (919)
Q Consensus 642 L~~Lr~L~L~~~~i~~LP~-~l~~L~~L~~L~L~~~~~~~~~lp~~-i~~L~~L~~L 696 (919)
+++|++|+|++|.|+.+|. .+..+++|++|+|++| .+..+|.. +..+++|++|
T Consensus 77 l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L 131 (193)
T 2wfh_A 77 MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN--DISVVPEGAFNDLSALSHL 131 (193)
T ss_dssp CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS--CCCBCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCC--CCCeeChhhhhcCccccEE
Confidence 9999999999999988776 6999999999999999 78888874 5556666665
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.61 E-value=4.2e-08 Score=106.21 Aligned_cols=122 Identities=16% Similarity=0.148 Sum_probs=83.6
Q ss_pred CCCceeEEEceecCCC-CcchhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccccCeeEE-EcCCCCcccc-
Q 036584 785 CQCLVDLRLSGRMKKL-PEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHYVKKLG-CRAEGFPLLE- 861 (919)
Q Consensus 785 ~~~L~~L~L~~~~~~~-p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~-~~~~~f~~L~- 861 (919)
+.++..+.+.+..... ...+...+++|+.|+|.+|.++..+..++..+++|+.|+|..| ...+. ..+.++++|+
T Consensus 201 ~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n---i~~I~~~aF~~~~~L~~ 277 (329)
T 3sb4_A 201 PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN---LKTIGQRVFSNCGRLAG 277 (329)
T ss_dssp GGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT---CCEECTTTTTTCTTCCE
T ss_pred ccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc---cceehHHHhhCChhccE
Confidence 3455666666543211 1112222599999999999988777778999999999999844 22222 2345667787
Q ss_pred eeEEecCCcccEEEc-cCCcccccceEEccccCccC-Ccc-cccCCCCCCeeEe
Q 036584 862 ILQLDADGLVEWQVE-EGAMPVLRGLKIAAEIPKLK-IPE-RLRSVPPPAEWEC 912 (919)
Q Consensus 862 ~L~l~~~~l~~~~~~-~~~~p~L~~L~l~~nC~~l~-lp~-~l~~L~~L~~l~~ 912 (919)
.|.+.. +++.++.. ...+++|+.|.+.+ ++++ ++. .+.++++|+.+..
T Consensus 278 ~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~--n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 278 TLELPA-SVTAIEFGAFMGCDNLRYVLATG--DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEECT-TCCEECTTTTTTCTTEEEEEECS--SCCCEECTTTTCTTCCCCEEEC
T ss_pred EEEEcc-cceEEchhhhhCCccCCEEEeCC--CccCccchhhhcCCcchhhhcc
Confidence 888875 67766422 23578999999976 6788 665 7889999998763
No 153
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.57 E-value=3.9e-07 Score=100.57 Aligned_cols=199 Identities=15% Similarity=0.101 Sum_probs=114.2
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFN 282 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 282 (919)
.+++|+++.++.+...+..+. ....+.|+|++|+||||+|+.+++.......+. ...+........+.....
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~ 87 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCREIEQGRF 87 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHHHHHTSCC
T ss_pred hhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHHHHhccCC
Confidence 469999999999999997753 234788999999999999999987432111110 000000011111111000
Q ss_pred cc----ccccccccCCHHHHHHHHHHH-hccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecchh-hhhhcC
Q 036584 283 IM----TALEDLETKTEEDLARSLRKS-LEAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRIKD-VAERSD 354 (919)
Q Consensus 283 ~~----~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~ 354 (919)
.. .............+...+... ..+++.++|+||++.. ..++.+...+.....+..+|++|.... +.....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~ 167 (373)
T 1jr3_A 88 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 (373)
T ss_dssp SSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHH
T ss_pred CceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHH
Confidence 00 000000111222222222111 1356789999999753 456666666654445677777775432 222122
Q ss_pred CCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHHHH
Q 036584 355 DRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVLGG 411 (919)
Q Consensus 355 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~~~ 411 (919)
.....+.+.+++.++..+++.+.+...... -..+....|++.++|.|..+..+..
T Consensus 168 sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~--~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 168 SRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred hheeEeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 223689999999999999998766432211 1234567899999999988765543
No 154
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.54 E-value=1.3e-07 Score=92.13 Aligned_cols=100 Identities=20% Similarity=0.281 Sum_probs=71.5
Q ss_pred CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhhh-hcccccceEEeecCCCcccc
Q 036584 580 NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEK-IGDLIHLKYLGLRNSNIGIL 658 (919)
Q Consensus 580 ~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~-i~~L~~Lr~L~L~~~~i~~L 658 (919)
.++++.|.+.++. .....+..|..+++|++|+|++ +. +. .+|.. ++.+++|++|+|++|.|+.+
T Consensus 27 ~~~l~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l~~-n~-----l~---~~~~~~~~~l~~L~~L~l~~N~l~~~ 91 (177)
T 2o6r_A 27 PSSATRLELESNK------LQSLPHGVFDKLTQLTKLSLSQ-NQ-----IQ---SLPDGVFDKLTKLTILYLHENKLQSL 91 (177)
T ss_dssp CTTCSEEECCSSC------CCCCCTTTTTTCTTCSEEECCS-SC-----CC---CCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCCcEEEeCCCc------ccEeCHHHhcCcccccEEECCC-Cc-----ce---EeChhHccCCCccCEEECCCCCcccc
Confidence 5678888887772 2334455677788888888888 77 66 55543 57888888888888888777
Q ss_pred Chh-hhcCCCCcEEecCCCCCcccccCccc-ccccccccc
Q 036584 659 PSS-IVKLQRLQTLDFSGDVGCPVELPIEI-NMMQELRHL 696 (919)
Q Consensus 659 P~~-l~~L~~L~~L~L~~~~~~~~~lp~~i-~~L~~L~~L 696 (919)
|.. +..+++|++|++++| .+..+|..+ ..+++|++|
T Consensus 92 ~~~~~~~l~~L~~L~l~~N--~l~~~~~~~~~~l~~L~~L 129 (177)
T 2o6r_A 92 PNGVFDKLTQLKELALDTN--QLKSVPDGIFDRLTSLQKI 129 (177)
T ss_dssp CTTTTTTCTTCCEEECCSS--CCSCCCTTTTTTCTTCCEE
T ss_pred CHHHhhCCcccCEEECcCC--cceEeCHHHhcCCcccCEE
Confidence 764 578888888888888 677777653 445555555
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.52 E-value=1.3e-07 Score=91.70 Aligned_cols=89 Identities=15% Similarity=0.174 Sum_probs=49.4
Q ss_pred CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhhh-hcccccceEEeecCCCcccc
Q 036584 580 NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEK-IGDLIHLKYLGLRNSNIGIL 658 (919)
Q Consensus 580 ~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~-i~~L~~Lr~L~L~~~~i~~L 658 (919)
.++++.|.+.++. +....+..|..+++|++|+|++ +. +. .+|.. +.++++|++|+|++|.|+.+
T Consensus 32 ~~~L~~L~Ls~N~------l~~~~~~~~~~l~~L~~L~Ls~-N~-----l~---~i~~~~~~~l~~L~~L~L~~N~l~~l 96 (174)
T 2r9u_A 32 PTDKQRLWLNNNQ------ITKLEPGVFDHLVNLQQLYFNS-NK-----LT---AIPTGVFDKLTQLTQLDLNDNHLKSI 96 (174)
T ss_dssp CTTCSEEECCSSC------CCCCCTTTTTTCTTCCEEECCS-SC-----CC---CCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCCcEEEeCCCC------ccccCHHHhcCCcCCCEEECCC-CC-----CC---ccChhHhCCcchhhEEECCCCcccee
Confidence 3556666665551 2233345556666666666666 55 55 45443 35566666666666666555
Q ss_pred Chh-hhcCCCCcEEecCCCCCcccccCc
Q 036584 659 PSS-IVKLQRLQTLDFSGDVGCPVELPI 685 (919)
Q Consensus 659 P~~-l~~L~~L~~L~L~~~~~~~~~lp~ 685 (919)
|.. +..+++|++|+|++| .+...|.
T Consensus 97 ~~~~~~~l~~L~~L~L~~N--~~~c~~~ 122 (174)
T 2r9u_A 97 PRGAFDNLKSLTHIYLYNN--PWDCECR 122 (174)
T ss_dssp CTTTTTTCTTCSEEECCSS--CBCTTBG
T ss_pred CHHHhccccCCCEEEeCCC--Ccccccc
Confidence 553 556666666666666 4444443
No 156
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.52 E-value=6.2e-08 Score=95.70 Aligned_cols=46 Identities=17% Similarity=0.283 Sum_probs=39.8
Q ss_pred CCCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcc
Q 036584 202 EENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
-..++||+++++.+.+++.... .+.+.|+|++|+|||+||+.+++.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999987743 456889999999999999999874
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.49 E-value=1.5e-06 Score=96.33 Aligned_cols=225 Identities=9% Similarity=0.066 Sum_probs=116.3
Q ss_pred cchhhhccCceEEEEEeccCccccccccccchhhhh-hhcccccceEEeecCCCccccCh-hhhcCCCCcEEecCCCCCc
Q 036584 602 HLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSE-KIGDLIHLKYLGLRNSNIGILPS-SIVKLQRLQTLDFSGDVGC 679 (919)
Q Consensus 602 ~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~-~i~~L~~Lr~L~L~~~~i~~LP~-~l~~L~~L~~L~L~~~~~~ 679 (919)
+-...|..+ .|+.+.|.. + +. .++. .+.+ .+|+.+.|.. .++.++. .+..|.+|+.+++.+| .
T Consensus 127 I~~~aF~~~-~L~~i~l~~-~------i~---~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n--~ 191 (401)
T 4fdw_A 127 IPKDAFRNS-QIAKVVLNE-G------LK---SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT--K 191 (401)
T ss_dssp ECTTTTTTC-CCSEEECCT-T------CC---EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS--C
T ss_pred ehHhhcccC-CccEEEeCC-C------cc---EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCC--c
Confidence 334456665 578888776 2 33 3433 3444 3688888875 6666654 6788888888888887 7
Q ss_pred ccccCccccccccccccccccccccCCCCcCcCcccccccccccchhhccCCCCCCeEEeeecCccccccccchhhHHhh
Q 036584 680 PVELPIEINMMQELRHLIGNFKGTLPIENLTNLQTLKYVQSKSWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAK 759 (919)
Q Consensus 680 ~~~lp~~i~~L~~L~~L~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~ 759 (919)
+..+|.......+|+.+.... +++.+ ....+..+++|+.+.+..+- .... . .++..
T Consensus 192 l~~I~~~aF~~~~L~~l~lp~----------~l~~I--------~~~aF~~~~~L~~l~l~~~l----~~I~-~-~aF~~ 247 (401)
T 4fdw_A 192 ITKLPASTFVYAGIEEVLLPV----------TLKEI--------GSQAFLKTSQLKTIEIPENV----STIG-Q-EAFRE 247 (401)
T ss_dssp CSEECTTTTTTCCCSEEECCT----------TCCEE--------CTTTTTTCTTCCCEECCTTC----CEEC-T-TTTTT
T ss_pred ceEechhhEeecccCEEEeCC----------chhee--------hhhHhhCCCCCCEEecCCCc----cCcc-c-ccccc
Confidence 788887666566666653211 01111 12223334444444443321 0000 1 23333
Q ss_pred cCCCcEEEEeecCCCCccCcCCCCCCCCceeEEEceecCC------CCcchhccCCCcceEEEEccCCCCCCchhhhcCC
Q 036584 760 LKNLRFLSVKLLDANSFASLQPLSHCQCLVDLRLSGRMKK------LPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLP 833 (919)
Q Consensus 760 l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~------~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp 833 (919)
.+|+.+.+.. ....+ .-..+..|++|+.+.+.++... ++...+.-+++|+.+.|.++ +......++..++
T Consensus 248 -~~L~~i~lp~-~i~~I-~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~ 323 (401)
T 4fdw_A 248 -SGITTVKLPN-GVTNI-ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNR 323 (401)
T ss_dssp -CCCSEEEEET-TCCEE-CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCC
T ss_pred -CCccEEEeCC-CccEE-ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEhhhhhcCCC
Confidence 4566666521 11111 1122555666666666554321 33333333467777777633 4434445666677
Q ss_pred CCCeEEEeeccccCeeEE-EcCCCCcccceeEEecCCcccE
Q 036584 834 NLIILDLHFRCHYVKKLG-CRAEGFPLLEILQLDADGLVEW 873 (919)
Q Consensus 834 ~L~~L~L~~~~~~~~~~~-~~~~~f~~L~~L~l~~~~l~~~ 873 (919)
+|+.+.|. ++. ..+. ..+.++ +|+.+.+..+.+..+
T Consensus 324 ~L~~l~lp-~~l--~~I~~~aF~~~-~L~~l~l~~n~~~~l 360 (401)
T 4fdw_A 324 KVTQLTIP-ANV--TQINFSAFNNT-GIKEVKVEGTTPPQV 360 (401)
T ss_dssp SCCEEEEC-TTC--CEECTTSSSSS-CCCEEEECCSSCCBC
T ss_pred CccEEEEC-ccc--cEEcHHhCCCC-CCCEEEEcCCCCccc
Confidence 77777775 321 1111 123344 677777765544443
No 158
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.48 E-value=3e-07 Score=98.99 Aligned_cols=182 Identities=13% Similarity=0.084 Sum_probs=112.6
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCC-EEEEEEeCCCCCHHHHHHHHHHHh
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFD-YCAWVSVSQDYKIKDLLLRIIKSF 281 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~il~~l 281 (919)
.+++|++..++.+.+++..+. ...+.|+|++|+|||++|+.+++... ...+. ..+.++.+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~----------- 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGI----------- 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCT-----------
T ss_pred HHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccCh-----------
Confidence 468999999999888887653 33489999999999999999987411 11111 1223333321110
Q ss_pred cccccccccccCCHHHHHHHHHHH--h-ccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecchh-hhhhcCC
Q 036584 282 NIMTALEDLETKTEEDLARSLRKS--L-EAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRIKD-VAERSDD 355 (919)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~l~~~--l-~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~ 355 (919)
.........+... + .+++.++|+|+++.. +..+.+...+.....+..+|+||.... +......
T Consensus 83 -----------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 83 -----------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp -----------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred -----------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 0001111111111 1 256789999999754 345667666665556778888876543 2211112
Q ss_pred CCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHHHH
Q 036584 356 RNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVLGG 411 (919)
Q Consensus 356 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~~~ 411 (919)
....+.+.+++.++..+++...+...... -..+....|++.++|.+..+.....
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp TCEEEECCCCCHHHHHHHHHHHHHTTCCC--BCHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred hCeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 22589999999999999998876543322 1234567888999999986554433
No 159
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.47 E-value=3.9e-06 Score=91.04 Aligned_cols=175 Identities=20% Similarity=0.146 Sum_probs=104.4
Q ss_pred CCCccccccCHHHHHHHHhcC---CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 036584 202 EENPVGFEDDTDLLLAKLLDK---EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRII 278 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 278 (919)
-.+++|++..++.+..++... ......|.|+|++|+|||+||+.+++. ....| +.++.+....
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~~---~~~~~~~~~~--------- 93 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE--MSANI---KTTAAPMIEK--------- 93 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCCE---EEEEGGGCCS---------
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEecchhccc---------
Confidence 357999999999998888753 334557899999999999999999873 33332 2333321111
Q ss_pred HHhcccccccccccCCHHHHHHHHHHHhccCceEEEEecccch--hHHHHHHhhCCCCC------------------CCc
Q 036584 279 KSFNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHK--EDWVSLKSAFPENK------------------IGS 338 (919)
Q Consensus 279 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~------------------~gs 338 (919)
.......+.. ..+..+|+||+++.. .....+...+.... ++.
T Consensus 94 ----------------~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T 3pfi_A 94 ----------------SGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKF 155 (338)
T ss_dssp ----------------HHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCC
T ss_pred ----------------hhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCe
Confidence 1111111111 235678999999754 22333333322111 124
Q ss_pred EEEEEecchhh-hhhcCC-CCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHHH
Q 036584 339 RVIITTRIKDV-AERSDD-RNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVLG 410 (919)
Q Consensus 339 ~iivTtr~~~v-~~~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~~ 410 (919)
.+|.+|..... ...... ....+.+++++.++...++.+.+..... .-..+....|++.+.|.|-.+..+.
T Consensus 156 ~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 156 TLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK--TCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC--EECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 56666554321 111111 1268999999999999999887654322 1224566778889999996554443
No 160
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.43 E-value=3.7e-06 Score=93.03 Aligned_cols=216 Identities=12% Similarity=0.068 Sum_probs=123.5
Q ss_pred CcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhh-hhhcccccceEEeecCCCccccC
Q 036584 581 SLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLS-EKIGDLIHLKYLGLRNSNIGILP 659 (919)
Q Consensus 581 ~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp-~~i~~L~~Lr~L~L~~~~i~~LP 659 (919)
.+|+++.+..+ ....-...|..+ .|+.+.|.. . +. .++ ..+.+|.+|+.++|.+|.++.+|
T Consensus 135 ~~L~~i~l~~~-------i~~I~~~aF~~~-~L~~i~lp~-~------l~---~I~~~aF~~c~~L~~l~l~~n~l~~I~ 196 (401)
T 4fdw_A 135 SQIAKVVLNEG-------LKSIGDMAFFNS-TVQEIVFPS-T------LE---QLKEDIFYYCYNLKKADLSKTKITKLP 196 (401)
T ss_dssp CCCSEEECCTT-------CCEECTTTTTTC-CCCEEECCT-T------CC---EECSSTTTTCTTCCEEECTTSCCSEEC
T ss_pred CCccEEEeCCC-------ccEECHHhcCCC-CceEEEeCC-C------cc---EehHHHhhCcccCCeeecCCCcceEec
Confidence 36778777554 223444566665 588999876 3 33 443 56889999999999999999999
Q ss_pred hhhhcCCCCcEEecCCCCCcccccCc-cccccccccccccccccccCCCCcCcCcccccccccccchhhccCCCCCCeEE
Q 036584 660 SSIVKLQRLQTLDFSGDVGCPVELPI-EINMMQELRHLIGNFKGTLPIENLTNLQTLKYVQSKSWNKVNTAKLVNLRDLH 738 (919)
Q Consensus 660 ~~l~~L~~L~~L~L~~~~~~~~~lp~-~i~~L~~L~~L~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~ 738 (919)
...-...+|+.+.+..+ +..++. .+..+++|+.+.... +++.+ ....+.. .+|+.+.
T Consensus 197 ~~aF~~~~L~~l~lp~~---l~~I~~~aF~~~~~L~~l~l~~----------~l~~I--------~~~aF~~-~~L~~i~ 254 (401)
T 4fdw_A 197 ASTFVYAGIEEVLLPVT---LKEIGSQAFLKTSQLKTIEIPE----------NVSTI--------GQEAFRE-SGITTVK 254 (401)
T ss_dssp TTTTTTCCCSEEECCTT---CCEECTTTTTTCTTCCCEECCT----------TCCEE--------CTTTTTT-CCCSEEE
T ss_pred hhhEeecccCEEEeCCc---hheehhhHhhCCCCCCEEecCC----------CccCc--------ccccccc-CCccEEE
Confidence 86555789999999855 666766 355667777663211 11111 1111222 3455555
Q ss_pred eeecCccccccccchhhHHhhcCCCcEEEEeecCCC--Ccc--CcCCCCCCCCceeEEEceecCCCCcchhccCCCcceE
Q 036584 739 IEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDAN--SFA--SLQPLSHCQCLVDLRLSGRMKKLPEDMHVFLPNLECL 814 (919)
Q Consensus 739 i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~--~~~~l~~~~~L~~L~L~~~~~~~p~~~~~l~~~L~~L 814 (919)
+... ..... . .++..+++|+.+.+...... ... .-..+..|++|+.+.|..+...++...+.-+++|+.|
T Consensus 255 lp~~----i~~I~-~-~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l 328 (401)
T 4fdw_A 255 LPNG----VTNIA-S-RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQL 328 (401)
T ss_dssp EETT----CCEEC-T-TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEE
T ss_pred eCCC----ccEEC-h-hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEE
Confidence 5322 11111 1 45566666666666432111 000 1122556666777766654444444333334677777
Q ss_pred EEEccCCCCCCchhhhcCCCCCeEEEeecc
Q 036584 815 SLSVPYPKEDPMPALEMLPNLIILDLHFRC 844 (919)
Q Consensus 815 ~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~ 844 (919)
.|..+ ++.....++.++ +|+.|.+.++.
T Consensus 329 ~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 329 TIPAN-VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp EECTT-CCEECTTSSSSS-CCCEEEECCSS
T ss_pred EECcc-ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 77544 333344556666 77777776443
No 161
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.42 E-value=1.2e-07 Score=103.20 Aligned_cols=129 Identities=18% Similarity=0.153 Sum_probs=76.2
Q ss_pred CCCCCceeEEEceec-CCCCcchhccCCCcceEEEEccCCCCCCchhhh--cCCCCCeEEEeec--cccCee-E-----E
Q 036584 783 SHCQCLVDLRLSGRM-KKLPEDMHVFLPNLECLSLSVPYPKEDPMPALE--MLPNLIILDLHFR--CHYVKK-L-----G 851 (919)
Q Consensus 783 ~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~--~lp~L~~L~L~~~--~~~~~~-~-----~ 851 (919)
..+|+|++|.|+++. ..+|. + .. ++|++|+|..|.+.......++ .+|+|+.|+|+.+ ...+.. + .
T Consensus 169 ~~~P~L~~L~L~g~~~l~l~~-~-~~-~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSIGK-K-PR-PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp HTCTTCCEEEEECCBTCBCCS-C-BC-TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred hcCCCCcEEEEeCCCCceecc-c-cC-CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 446677777777653 23343 2 23 7788888877776655545554 6788888877531 111110 0 1
Q ss_pred EcCCCCcccceeEEecCCccc-E---EEccCCcccccceEEccccCccC------CcccccCCCCCCeeEecccC
Q 036584 852 CRAEGFPLLEILQLDADGLVE-W---QVEEGAMPVLRGLKIAAEIPKLK------IPERLRSVPPPAEWECEDSR 916 (919)
Q Consensus 852 ~~~~~f~~L~~L~l~~~~l~~-~---~~~~~~~p~L~~L~l~~nC~~l~------lp~~l~~L~~L~~l~~~~~~ 916 (919)
.....||+|+.|.|..+.+.. . ......||+|++|+|+. +.+. ++.++.++++|+.|+++.|.
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~--n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA--GVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS--SCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC--CCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 122457888888887444432 1 11224578888888864 4555 45566777888888877654
No 162
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.41 E-value=3.3e-07 Score=89.14 Aligned_cols=105 Identities=21% Similarity=0.165 Sum_probs=76.0
Q ss_pred CCCCceeEEEceec-CCCCcc-hhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccccCeeEEEcCCCCcccc
Q 036584 784 HCQCLVDLRLSGRM-KKLPED-MHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHYVKKLGCRAEGFPLLE 861 (919)
Q Consensus 784 ~~~~L~~L~L~~~~-~~~p~~-~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~f~~L~ 861 (919)
.+++|+.|+++++. ..+|.. +..+ ++|++|+|++|.++..+...++.+++|+.|+|++|.+... .......+++|+
T Consensus 26 ~~~~l~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~ 103 (177)
T 2o6r_A 26 IPSSATRLELESNKLQSLPHGVFDKL-TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL-PNGVFDKLTQLK 103 (177)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCC
T ss_pred CCCCCcEEEeCCCcccEeCHHHhcCc-ccccEEECCCCcceEeChhHccCCCccCEEECCCCCcccc-CHHHhhCCcccC
Confidence 35788999998874 455544 4455 8899999999988766666678899999999986655421 111235678888
Q ss_pred eeEEecCCcccEEEcc-CCcccccceEEcc
Q 036584 862 ILQLDADGLVEWQVEE-GAMPVLRGLKIAA 890 (919)
Q Consensus 862 ~L~l~~~~l~~~~~~~-~~~p~L~~L~l~~ 890 (919)
+|+++.|.++.++... ..+++|+.|++++
T Consensus 104 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 104 ELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred EEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence 8888877888765443 4588888888887
No 163
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.41 E-value=2.3e-06 Score=90.33 Aligned_cols=178 Identities=17% Similarity=0.141 Sum_probs=101.5
Q ss_pred CCCccccccCHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCH
Q 036584 202 EENPVGFEDDTDLLLAKLLDK-----------EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKI 270 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 270 (919)
-.+++|.++.++.+.+.+... -...+.+.|+|++|+|||+||+.+++. .... .+.+..+.-..
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~---~~~v~~~~~~~- 89 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNAT---FIRVVGSELVK- 89 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCE---EEEEEGGGGCC-
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehHHHHH-
Confidence 356899999999998887542 123557899999999999999999984 3222 22333221100
Q ss_pred HHHHHHHHHHhcccccccccccCCHHHHHHHHHH-HhccCceEEEEecccch----------------hHHHHHHhhCC-
Q 036584 271 KDLLLRIIKSFNIMTALEDLETKTEEDLARSLRK-SLEAYSYLMVIDDIWHK----------------EDWVSLKSAFP- 332 (919)
Q Consensus 271 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~----------------~~~~~l~~~l~- 332 (919)
.... ........+.. ....++.+|+|||++.. .....+...+.
T Consensus 90 ------------------~~~~-~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 150 (285)
T 3h4m_A 90 ------------------KFIG-EGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDG 150 (285)
T ss_dssp ------------------CSTT-HHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHT
T ss_pred ------------------hccc-hHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhC
Confidence 0000 01122222222 33456789999999653 11222222222
Q ss_pred -CCCCCcEEEEEecchhhhhh--cC--CCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCc-chHH
Q 036584 333 -ENKIGSRVIITTRIKDVAER--SD--DRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGL-PLAI 406 (919)
Q Consensus 333 -~~~~gs~iivTtr~~~v~~~--~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~-PLal 406 (919)
....+..||.||........ .. -....+.++..+.++..+++...+.......+ .....|++.+.|. |-.+
T Consensus 151 ~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~l~~~~~g~~~~~i 227 (285)
T 3h4m_A 151 FDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED---VNLEEIAKMTEGCVGAEL 227 (285)
T ss_dssp TCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHHCTTCCHHHH
T ss_pred CCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc---CCHHHHHHHcCCCCHHHH
Confidence 12335677777765432211 01 11147899999999999999887654332211 1145677777774 4344
Q ss_pred H
Q 036584 407 V 407 (919)
Q Consensus 407 ~ 407 (919)
.
T Consensus 228 ~ 228 (285)
T 3h4m_A 228 K 228 (285)
T ss_dssp H
T ss_pred H
Confidence 3
No 164
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.41 E-value=3.5e-07 Score=88.27 Aligned_cols=82 Identities=18% Similarity=0.353 Sum_probs=46.4
Q ss_pred CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhhh-hcccccceEEeecCCCcccc
Q 036584 580 NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEK-IGDLIHLKYLGLRNSNIGIL 658 (919)
Q Consensus 580 ~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~-i~~L~~Lr~L~L~~~~i~~L 658 (919)
.++++.|.+.++. +....+..|..+++|++|+|++ +. +. .+|.. +..+++|++|+|++|.|+.+
T Consensus 29 ~~~l~~L~L~~N~------i~~~~~~~~~~l~~L~~L~Ls~-N~-----l~---~l~~~~f~~l~~L~~L~L~~N~l~~~ 93 (170)
T 3g39_A 29 PTTTQVLYLYDNQ------ITKLEPGVFDRLTQLTRLDLDN-NQ-----LT---VLPAGVFDKLTQLTQLSLNDNQLKSI 93 (170)
T ss_dssp CTTCSEEECCSSC------CCCCCTTTTTTCTTCSEEECCS-SC-----CC---CCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCCcEEEcCCCc------CCccChhhhcCcccCCEEECCC-CC-----cC---ccChhhccCCCCCCEEECCCCccCEe
Confidence 4556666665551 2233345556666666666666 55 55 44433 35666666666666666555
Q ss_pred Chh-hhcCCCCcEEecCCC
Q 036584 659 PSS-IVKLQRLQTLDFSGD 676 (919)
Q Consensus 659 P~~-l~~L~~L~~L~L~~~ 676 (919)
|.. +..+++|++|+|++|
T Consensus 94 ~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 94 PRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CTTTTTTCTTCCEEECCSS
T ss_pred CHHHhcCCCCCCEEEeCCC
Confidence 553 556666666666666
No 165
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.37 E-value=7.4e-06 Score=85.73 Aligned_cols=197 Identities=13% Similarity=0.090 Sum_probs=103.1
Q ss_pred CCccccccCHHHHHH-------HHhcC-CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHH
Q 036584 203 ENPVGFEDDTDLLLA-------KLLDK-EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLL 274 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~-------~L~~~-~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 274 (919)
..++|.+..++.++. .+... ......+.|+|++|+|||+||+.+++. .... .+.+..+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~---~~~i~~~~~------- 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE--SNFP---FIKICSPDK------- 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH--HTCS---EEEEECGGG-------
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEeCHHH-------
Confidence 457787777666665 33221 334678999999999999999999984 2222 122222211
Q ss_pred HHHHHHhcccccccccccCCHHHHHHHHHHHhccCceEEEEecccch-----------hH-HHHHHhhCCC---CCCCcE
Q 036584 275 LRIIKSFNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHK-----------ED-WVSLKSAFPE---NKIGSR 339 (919)
Q Consensus 275 ~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------~~-~~~l~~~l~~---~~~gs~ 339 (919)
+.+.. .......+...+......++.+|+|||++.. .. ...+...+.. .+....
T Consensus 101 ------~~g~~-----~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ 169 (272)
T 1d2n_A 101 ------MIGFS-----ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLL 169 (272)
T ss_dssp ------CTTCC-----HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEE
T ss_pred ------hcCCc-----hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEE
Confidence 00000 0000112222222333466889999998653 12 2334343332 223344
Q ss_pred EEEEecchhhhhh---cCCCCceEecCCCCh-HhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCc------chHHHHH
Q 036584 340 VIITTRIKDVAER---SDDRNYVHELRFLRQ-DESWQLFCERAFRNSKAEKGLENLGREMVQKCDGL------PLAIVVL 409 (919)
Q Consensus 340 iivTtr~~~v~~~---~~~~~~~~~l~~L~~-~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~------PLal~~~ 409 (919)
||.||...+.... .......+.+++++. ++...++.+.. .. ..+....|++.+.|. .-++..+
T Consensus 170 ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~~----~~~~~~~l~~~~~g~~~~g~ir~l~~~l 242 (272)
T 1d2n_A 170 IIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---NF----KDKERTTIAQQVKGKKVWIGIKKLLMLI 242 (272)
T ss_dssp EEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---CS----CHHHHHHHHHHHTTSEEEECHHHHHHHH
T ss_pred EEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---CC----CHHHHHHHHHHhcCCCccccHHHHHHHH
Confidence 6667766643332 112136788999988 66666665431 11 134567788888873 3333333
Q ss_pred HHHhcCCChHHHHHHHHHHH
Q 036584 410 GGLLSTKRPQEWREVRNHIW 429 (919)
Q Consensus 410 ~~~l~~~~~~~w~~~~~~~~ 429 (919)
-..........+..++..+.
T Consensus 243 ~~a~~~~~~~~~~~~~~~l~ 262 (272)
T 1d2n_A 243 EMSLQMDPEYRVRKFLALLR 262 (272)
T ss_dssp HHHTTSCGGGHHHHHHHHHH
T ss_pred HHHhhhchHHHHHHHHHHHH
Confidence 22222124455666555443
No 166
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.37 E-value=5.4e-07 Score=92.53 Aligned_cols=173 Identities=13% Similarity=0.073 Sum_probs=98.2
Q ss_pred CCccccc---cCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 036584 203 ENPVGFE---DDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIK 279 (919)
Q Consensus 203 ~~~vGr~---~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 279 (919)
++++|.+ ..++.+..+.... ..+.+.|+|++|+||||||+.+++. .......+.|++++.....
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~--------- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI--------- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS---------
T ss_pred hhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH---------
Confidence 4577643 3334444444433 3568899999999999999999974 2222334667766432110
Q ss_pred HhcccccccccccCCHHHHHHHHHHHhccCceEEEEecccchh--H--HHHHHhhCCCC-CCC-cEEEEEecchh-----
Q 036584 280 SFNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHKE--D--WVSLKSAFPEN-KIG-SRVIITTRIKD----- 348 (919)
Q Consensus 280 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~--~~~l~~~l~~~-~~g-s~iivTtr~~~----- 348 (919)
+. . ..+.+ .++.+||+||++... . .+.+...+... ..+ .++|+||+...
T Consensus 95 -~~------~------------~~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 95 -ST------A------------LLEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp -CG------G------------GGTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred -HH------H------------HHHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 00 0 00011 346799999997542 1 23333322210 112 24777776332
Q ss_pred ----hhhhcCCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHHHH
Q 036584 349 ----VAERSDDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVLGG 411 (919)
Q Consensus 349 ----v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~~~ 411 (919)
+...+... ..+.+++++.++..+++...+...... -..+....|++.++|.+-.+..+..
T Consensus 155 ~~~~l~~r~~~~-~~i~l~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 155 VLPDLVSRMHWG-LTYQLQPMMDDEKLAALQRRAAMRGLQ--LPEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp CCHHHHHHHHHS-EEEECCCCCGGGHHHHHHHHHHHTTCC--CCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hhhhhhhHhhcC-ceEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHccCCHHHHHHHHH
Confidence 11111111 578999999999999998876432221 1235667888999998876654433
No 167
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.37 E-value=5e-07 Score=87.17 Aligned_cols=70 Identities=21% Similarity=0.333 Sum_probs=40.5
Q ss_pred EEEEeccCccccccccccchhhhhhhcccccceEEeecCCCcccc-ChhhhcCCCCcEEecCCCCCcccccCccc-cccc
Q 036584 614 RVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGIL-PSSIVKLQRLQTLDFSGDVGCPVELPIEI-NMMQ 691 (919)
Q Consensus 614 rvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~L-P~~l~~L~~L~~L~L~~~~~~~~~lp~~i-~~L~ 691 (919)
++|++++ +. +. .+|..+. .+|++|+|++|.|+.+ |..+..+++|++|+|++| .+..+|..+ ..++
T Consensus 12 ~~l~~s~-n~-----l~---~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N--~l~~l~~~~f~~l~ 78 (170)
T 3g39_A 12 TTVDCSG-KS-----LA---SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN--QLTVLPAGVFDKLT 78 (170)
T ss_dssp TEEECTT-SC-----CS---SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS--CCCCCCTTTTTTCT
T ss_pred CEEEeCC-CC-----cC---ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC--CcCccChhhccCCC
Confidence 4566666 55 55 5665543 5666666666666555 345666666666666666 555555542 3344
Q ss_pred ccccc
Q 036584 692 ELRHL 696 (919)
Q Consensus 692 ~L~~L 696 (919)
+|++|
T Consensus 79 ~L~~L 83 (170)
T 3g39_A 79 QLTQL 83 (170)
T ss_dssp TCCEE
T ss_pred CCCEE
Confidence 44433
No 168
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.36 E-value=5.8e-07 Score=87.04 Aligned_cols=40 Identities=23% Similarity=0.450 Sum_probs=18.9
Q ss_pred hhhcccccceEEeecCCCccccChh-hhcCCCCcEEecCCC
Q 036584 637 EKIGDLIHLKYLGLRNSNIGILPSS-IVKLQRLQTLDFSGD 676 (919)
Q Consensus 637 ~~i~~L~~Lr~L~L~~~~i~~LP~~-l~~L~~L~~L~L~~~ 676 (919)
..++++++|++|+|++|+|+.+|.. +..+++|++|+|++|
T Consensus 51 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 51 GVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred HHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 3444444455555555444444443 244444555555444
No 169
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.35 E-value=9.9e-06 Score=84.20 Aligned_cols=182 Identities=11% Similarity=0.045 Sum_probs=99.6
Q ss_pred CCccccccCHHHHHHHHhc---CC-------CCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHH
Q 036584 203 ENPVGFEDDTDLLLAKLLD---KE-------QRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKD 272 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~---~~-------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 272 (919)
.+++|.++.++.+.+++.. .. ...+.|.|+|++|+|||++|+.+++. .... .+.++.+.-.+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~--- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVP---FLAMAGAEFVE--- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCC---EEEEETTTTSS---
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEechHHHHh---
Confidence 4688888877777655432 11 23456889999999999999999983 3322 33444432211
Q ss_pred HHHHHHHHhcccccccccccCCHHHHHHHHHHHhccCceEEEEecccch-----------------hHHHHHHhhCCC--
Q 036584 273 LLLRIIKSFNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHK-----------------EDWVSLKSAFPE-- 333 (919)
Q Consensus 273 ~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------------~~~~~l~~~l~~-- 333 (919)
.........+...+.......+.+|+|||++.. .....+...+..
T Consensus 78 ----------------~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 141 (262)
T 2qz4_A 78 ----------------VIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG 141 (262)
T ss_dssp ----------------SSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC
T ss_pred ----------------hccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC
Confidence 000001112222233333456789999999753 112233332222
Q ss_pred CCCCcEEEEEecchhhh-h-hcC--CCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcch-HHHH
Q 036584 334 NKIGSRVIITTRIKDVA-E-RSD--DRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPL-AIVV 408 (919)
Q Consensus 334 ~~~gs~iivTtr~~~v~-~-~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PL-al~~ 408 (919)
...+..||.||...... . ... -....+.++..+.++..+++...+....... ........+++.+.|.+- .+..
T Consensus 142 ~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~-~~~~~~~~l~~~~~g~~~~~l~~ 220 (262)
T 2qz4_A 142 TTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQ-SSTFYSQRLAELTPGFSGADIAN 220 (262)
T ss_dssp TTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCB-THHHHHHHHHHTCTTCCHHHHHH
T ss_pred CCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCc-chhhHHHHHHHHCCCCCHHHHHH
Confidence 22345666666554321 1 111 1125788999999999999988765433221 112234678888888764 4433
Q ss_pred H
Q 036584 409 L 409 (919)
Q Consensus 409 ~ 409 (919)
+
T Consensus 221 l 221 (262)
T 2qz4_A 221 I 221 (262)
T ss_dssp H
T ss_pred H
Confidence 3
No 170
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.33 E-value=2.4e-06 Score=93.89 Aligned_cols=202 Identities=13% Similarity=0.098 Sum_probs=108.4
Q ss_pred CCCccccccCHHH---HHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEe----CCCCCHHHHH
Q 036584 202 EENPVGFEDDTDL---LLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSV----SQDYKIKDLL 274 (919)
Q Consensus 202 ~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~----~~~~~~~~~~ 274 (919)
-+.++|++..++. +.+.+..+....+.+.|+|++|+|||++|+.+++.......| +.+.. +......+.+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF---TAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE---EEEEGGGGSCSSSCHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc---ccccchhhhhcccchhHHH
Confidence 3579999988766 455555554344689999999999999999999843211121 22222 1223344444
Q ss_pred HHHHHHhccccc------------------c--------cccccCCHHHHHHHHHHHh-----ccC----ceEEEEeccc
Q 036584 275 LRIIKSFNIMTA------------------L--------EDLETKTEEDLARSLRKSL-----EAY----SYLMVIDDIW 319 (919)
Q Consensus 275 ~~il~~l~~~~~------------------~--------~~~~~~~~~~~~~~l~~~l-----~~~----~~LlVlDdv~ 319 (919)
.+.......... . ..........+...+.+.. .++ +.+|+||+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 444333211000 0 0000000122222222221 233 4599999997
Q ss_pred ch--hHHHHHHhhCCCCCCCcEEEEEecc-------------hhhhhhcCCCCceEecCCCChHhHHHHHHHHhccCCCC
Q 036584 320 HK--EDWVSLKSAFPENKIGSRVIITTRI-------------KDVAERSDDRNYVHELRFLRQDESWQLFCERAFRNSKA 384 (919)
Q Consensus 320 ~~--~~~~~l~~~l~~~~~gs~iivTtr~-------------~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 384 (919)
.. +....+...+...... .++++|.. ..+..........+.+++++.++..+++..++......
T Consensus 200 ~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~ 278 (368)
T 3uk6_A 200 MLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVE 278 (368)
T ss_dssp GSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTCC
T ss_pred ccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 54 4455666666544333 34444431 11111111122468999999999999999876543222
Q ss_pred chhhHHHHHHHHHHcC-CcchHHHHH
Q 036584 385 EKGLENLGREMVQKCD-GLPLAIVVL 409 (919)
Q Consensus 385 ~~~~~~~~~~I~~~~~-G~PLal~~~ 409 (919)
-..+....|++.+. |.|-.+..+
T Consensus 279 --~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 279 --MSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp --BCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred --CCHHHHHHHHHHhcCCCHHHHHHH
Confidence 22345677888887 777655433
No 171
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.32 E-value=1.2e-06 Score=93.84 Aligned_cols=154 Identities=19% Similarity=0.142 Sum_probs=87.7
Q ss_pred CccccccCHHHHHHHHhcC-------------CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCH
Q 036584 204 NPVGFEDDTDLLLAKLLDK-------------EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKI 270 (919)
Q Consensus 204 ~~vGr~~~~~~l~~~L~~~-------------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 270 (919)
.++|.+..++.+.+++... ......+.|+|++|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 4778777777776655421 223457899999999999999988764221111111123333211
Q ss_pred HHHHHHHHHHhcccccccccccCCHHHHHHHHHHHhccCceEEEEeccc-----------chhHHHHHHhhCCCCCCCcE
Q 036584 271 KDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIW-----------HKEDWVSLKSAFPENKIGSR 339 (919)
Q Consensus 271 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-----------~~~~~~~l~~~l~~~~~gs~ 339 (919)
.+.. .............+.. .+..+|+||+++ ..+....+...+.....+..
T Consensus 109 ---------~l~~-----~~~g~~~~~~~~~~~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ 171 (309)
T 3syl_A 109 ---------DLVG-----QYIGHTAPKTKEVLKR---AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLV 171 (309)
T ss_dssp ---------GTCC-----SSTTCHHHHHHHHHHH---HTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCE
T ss_pred ---------Hhhh-----hcccccHHHHHHHHHh---cCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEE
Confidence 0000 0001111122222222 245699999998 33344555555554555677
Q ss_pred EEEEecchh----------hhhhcCCCCceEecCCCChHhHHHHHHHHhcc
Q 036584 340 VIITTRIKD----------VAERSDDRNYVHELRFLRQDESWQLFCERAFR 380 (919)
Q Consensus 340 iivTtr~~~----------v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~ 380 (919)
||.||.... +...+ ...+.+++++.++..+++...+..
T Consensus 172 ~i~~~~~~~~~~~~~~~~~l~~R~---~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 172 VILAGYADRMENFFQSNPGFRSRI---AHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp EEEEECHHHHHHHHHHSTTHHHHE---EEEEEECCCCHHHHHHHHHHHHHH
T ss_pred EEEeCChHHHHHHHhhCHHHHHhC---CeEEEcCCcCHHHHHHHHHHHHHH
Confidence 888876432 22221 167899999999999999877643
No 172
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.29 E-value=2.7e-06 Score=92.88 Aligned_cols=195 Identities=11% Similarity=0.058 Sum_probs=111.6
Q ss_pred CCCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCcc--CCCCEEEEEEeCCCCCHHHHHHHHHH
Q 036584 202 EENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVK--NKFDYCAWVSVSQDYKIKDLLLRIIK 279 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~--~~f~~~~wv~~~~~~~~~~~~~~il~ 279 (919)
-.+++|+++.++.+..++..+. ...+.|+|++|+||||+|+.+++..... ..+ .+..++.+..... ..+.+.+.
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~ 111 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKS-RILELNASDERGI-SIVREKVK 111 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT-SEEEECSSSCCCH-HHHTTHHH
T ss_pred HHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhCCCccccc-ceEEEccccccch-HHHHHHHH
Confidence 3579999999999999987764 2238999999999999999998742111 111 1333443332222 22222222
Q ss_pred HhcccccccccccCCHHHHHHHHHHHhccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecchh-hhhhcCCC
Q 036584 280 SFNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRIKD-VAERSDDR 356 (919)
Q Consensus 280 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~ 356 (919)
.+...... . .... .....-.+++-+|++|+++.. .....+...+.......++|++|.... +.......
T Consensus 112 ~~~~~~~~-~--~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR 183 (353)
T 1sxj_D 112 NFARLTVS-K--PSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQ 183 (353)
T ss_dssp HHHHSCCC-C--CCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHH
T ss_pred HHhhhccc-c--cchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhcc
Confidence 22111000 0 0000 000011234569999999753 334555554443344567777765432 21111111
Q ss_pred CceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHHH
Q 036584 357 NYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVLG 410 (919)
Q Consensus 357 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~~ 410 (919)
...+.+.+++.++....+...+...... -..+....|++.++|.|..+..+.
T Consensus 184 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 184 CSKFRFKALDASNAIDRLRFISEQENVK--CDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred CceEEeCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2578999999999999998876433221 123567889999999998654443
No 173
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.25 E-value=5.2e-06 Score=92.72 Aligned_cols=177 Identities=14% Similarity=0.068 Sum_probs=102.9
Q ss_pred CCCccccccCH---HHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 036584 202 EENPVGFEDDT---DLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRII 278 (919)
Q Consensus 202 ~~~~vGr~~~~---~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 278 (919)
-.+++|.+..+ ..+...+..+. ...+.|+|++|+||||||+.+++. .... ++.++.......-++.++
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~~--~~~~-----f~~l~a~~~~~~~ir~~~ 95 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARY--ANAD-----VERISAVTSGVKEIREAI 95 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHHH--TTCE-----EEEEETTTCCHHHHHHHH
T ss_pred HHHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHHH--hCCC-----eEEEEeccCCHHHHHHHH
Confidence 35689988777 67777777765 468999999999999999999984 3322 222221111111111111
Q ss_pred HHhcccccccccccCCHHHHHHHHHH-HhccCceEEEEecccchh--HHHHHHhhCCCCCCCcEEEE-Eecchh--hhhh
Q 036584 279 KSFNIMTALEDLETKTEEDLARSLRK-SLEAYSYLMVIDDIWHKE--DWVSLKSAFPENKIGSRVII-TTRIKD--VAER 352 (919)
Q Consensus 279 ~~l~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiv-Ttr~~~--v~~~ 352 (919)
..... ...+++.+|+||+++... ..+.+...+..+ ...+|. ||.+.. +...
T Consensus 96 ---------------------~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~a 152 (447)
T 3pvs_A 96 ---------------------ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSA 152 (447)
T ss_dssp ---------------------HHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHH
T ss_pred ---------------------HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHH
Confidence 11111 124568899999997542 334444444331 233444 444432 1111
Q ss_pred cCCCCceEecCCCChHhHHHHHHHHhccCC-----CCchhhHHHHHHHHHHcCCcchHHHHHH
Q 036584 353 SDDRNYVHELRFLRQDESWQLFCERAFRNS-----KAEKGLENLGREMVQKCDGLPLAIVVLG 410 (919)
Q Consensus 353 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~-----~~~~~~~~~~~~I~~~~~G~PLal~~~~ 410 (919)
.......+.+++++.++...++.+.+.... ....-..+....|++.++|.+-.+..+.
T Consensus 153 L~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 153 LLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp HHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 112226888999999999999988765411 1122234567778888999887654433
No 174
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.20 E-value=8.6e-05 Score=79.38 Aligned_cols=182 Identities=18% Similarity=0.125 Sum_probs=102.2
Q ss_pred CCccccccCHHHHHHHHhcC----------CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHH
Q 036584 203 ENPVGFEDDTDLLLAKLLDK----------EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKD 272 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 272 (919)
.+++|.++.++.+.+.+... ....+.|.|+|++|+|||+||+.+++... .. ..+.++.+.-..
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~---~~~~i~~~~l~~--- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NS---TFFSISSSDLVS--- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SC---EEEEEECCSSCC---
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CC---cEEEEEhHHHHh---
Confidence 46888888888887766421 12346899999999999999999998420 11 123333332110
Q ss_pred HHHHHHHHhcccccccccccCCHHHHHHHHHHHh-ccCceEEEEecccch---------h----HHHHHHhhCCC---CC
Q 036584 273 LLLRIIKSFNIMTALEDLETKTEEDLARSLRKSL-EAYSYLMVIDDIWHK---------E----DWVSLKSAFPE---NK 335 (919)
Q Consensus 273 ~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~---------~----~~~~l~~~l~~---~~ 335 (919)
...... ......+.+.. ..++.+|+||+++.. + ....+...+.. ..
T Consensus 85 ----------------~~~g~~-~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~ 147 (322)
T 1xwi_A 85 ----------------KWLGES-EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 147 (322)
T ss_dssp ----------------SSCCSC-HHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCC
T ss_pred ----------------hhhhHH-HHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccC
Confidence 001112 22333333333 457889999999754 1 11223322222 23
Q ss_pred CCcEEEEEecchhhh-hhc-CCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcch-HHHHHH
Q 036584 336 IGSRVIITTRIKDVA-ERS-DDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPL-AIVVLG 410 (919)
Q Consensus 336 ~gs~iivTtr~~~v~-~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PL-al~~~~ 410 (919)
.+..||.||...... ... .-....+.++..+.++..+++..+........ .......|++.+.|..- .|..+.
T Consensus 148 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l--~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 148 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL--TEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp TTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC--CHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345555566543211 100 01125788999999999999988764332211 12456778899988743 344443
No 175
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.19 E-value=1.4e-05 Score=86.01 Aligned_cols=179 Identities=18% Similarity=0.105 Sum_probs=103.8
Q ss_pred CCCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 036584 202 EENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSF 281 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 281 (919)
-++++|.++.++.+.+++..+. ...++.+.|++|+|||++|+.+++. .. ...+.++.+.. . ...++..+...
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~~-~-~~~i~~~~~~~ 96 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSDC-K-IDFVRGPLTNF 96 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTTC-C-HHHHHTHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEccccc-C-HHHHHHHHHHH
Confidence 3579999999999999998653 3357888889999999999999984 22 22444554432 1 22222222211
Q ss_pred cccccccccccCCHHHHHHHHHHHhccCceEEEEecccchh---HHHHHHhhCCCCCCCcEEEEEecchhh-hhhcCCCC
Q 036584 282 NIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHKE---DWVSLKSAFPENKIGSRVIITTRIKDV-AERSDDRN 357 (919)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---~~~~l~~~l~~~~~gs~iivTtr~~~v-~~~~~~~~ 357 (919)
.... ...+++.+|++||++... ..+.+...+.....+.++|+||....- ........
T Consensus 97 ~~~~-------------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~ 157 (324)
T 3u61_B 97 ASAA-------------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC 157 (324)
T ss_dssp HHBC-------------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS
T ss_pred Hhhc-------------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC
Confidence 1100 012367899999998643 444555444433345678887765431 11111111
Q ss_pred ceEecCCCChHhHHHHH-------HHHhccCCCCchhhHHHHHHHHHHcCCcchHHHH
Q 036584 358 YVHELRFLRQDESWQLF-------CERAFRNSKAEKGLENLGREMVQKCDGLPLAIVV 408 (919)
Q Consensus 358 ~~~~l~~L~~~~~~~lf-------~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~ 408 (919)
..+.+++++.++-.+++ .+.+.......+ ..+....|++.++|.+-.+..
T Consensus 158 ~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~-~~~~~~~l~~~~~gd~R~a~~ 214 (324)
T 3u61_B 158 RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIA-DMKVVAALVKKNFPDFRKTIG 214 (324)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBS-CHHHHHHHHHHTCSCTTHHHH
T ss_pred cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHhCCCCHHHHHH
Confidence 57899999988843332 222221111111 025677888999988875443
No 176
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.19 E-value=8.3e-06 Score=89.05 Aligned_cols=195 Identities=12% Similarity=0.080 Sum_probs=104.0
Q ss_pred CCccccccCHHHHHHHH-hcCCCCcEEEEEEecCCchHHHHHHHHHccc-C-ccC--CCCE-------------------
Q 036584 203 ENPVGFEDDTDLLLAKL-LDKEQRRLVISIYGMGGLGKTTLARKLYHNN-D-VKN--KFDY------------------- 258 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L-~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~-~-~~~--~f~~------------------- 258 (919)
.+++|.+..++.+.+++ ..+. ... +.|+|++|+||||+|+.++... . ..+ .++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 91 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSP 91 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECS
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeeccc
Confidence 46889988888888877 4433 223 8999999999999999988731 1 000 0111
Q ss_pred -EEEEEeCCCC-CHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHHhccCceEEEEecccch--hHHHHHHhhCCCC
Q 036584 259 -CAWVSVSQDY-KIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHK--EDWVSLKSAFPEN 334 (919)
Q Consensus 259 -~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~ 334 (919)
.+.+..+... ......++++..+..... ..... .+ ..+.+++-++|||++... +....+...+...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 92 YHLEITPSDMGNNDRIVIQELLKEVAQMEQ--------VDFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp SEEEECCC----CCHHHHHHHHHHHTTTTC----------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ceEEecHhhcCCcchHHHHHHHHHHHHhcc--------ccccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 0111111000 000012222222211000 00000 00 002336679999999754 3344454444333
Q ss_pred CCCcEEEEEecch-hhhhhcCCCCceEecCCCChHhHHHHHHHHhccCCCCchhh-HHHHHHHHHHcCCcchHHHHHHH
Q 036584 335 KIGSRVIITTRIK-DVAERSDDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGL-ENLGREMVQKCDGLPLAIVVLGG 411 (919)
Q Consensus 335 ~~gs~iivTtr~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~-~~~~~~I~~~~~G~PLal~~~~~ 411 (919)
..+..+|++|... .+..........+.+.+++.++..+.+.+.+...... -. .+.+..|++.++|.+-.+..+..
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ--LETKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE--ECCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC--CCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3467777777653 2222222223689999999999999998876432211 11 35677899999999976655443
No 177
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.19 E-value=2.4e-05 Score=85.15 Aligned_cols=183 Identities=14% Similarity=0.028 Sum_probs=104.4
Q ss_pred CCCccccccCHHHHHHHHhc----------CCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHH
Q 036584 202 EENPVGFEDDTDLLLAKLLD----------KEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIK 271 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 271 (919)
-.+++|.+..++.+.+.+.. .....+.|.|+|++|+|||+||+.+++. ... ..+.++.+.-..
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~---~~~~i~~~~l~~-- 155 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGA---TFFSISASSLTS-- 155 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTC---EEEEEEGGGGCC--
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCC---eEEEEehHHhhc--
Confidence 35689999999999888753 1123568999999999999999999984 222 234444432111
Q ss_pred HHHHHHHHHhcccccccccccCCHHHHHHHHHHHh-ccCceEEEEecccch-------------hHHHHHHhhCCC----
Q 036584 272 DLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSL-EAYSYLMVIDDIWHK-------------EDWVSLKSAFPE---- 333 (919)
Q Consensus 272 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~-------------~~~~~l~~~l~~---- 333 (919)
.... ........+.... ..++.+|+||+++.. .....+...+..
T Consensus 156 -----------------~~~g-~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 217 (357)
T 3d8b_A 156 -----------------KWVG-EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTS 217 (357)
T ss_dssp -----------------SSTT-HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----
T ss_pred -----------------cccc-hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccccc
Confidence 0000 0122222333322 456789999999543 112333333322
Q ss_pred CCCCcEEEEEecchh-hhhhc-CCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCC-cchHHHHHH
Q 036584 334 NKIGSRVIITTRIKD-VAERS-DDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDG-LPLAIVVLG 410 (919)
Q Consensus 334 ~~~gs~iivTtr~~~-v~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G-~PLal~~~~ 410 (919)
...+..||.||.... +.... .-....+.++..+.++..+++...+...... -..+....|++.+.| .+-.+..+.
T Consensus 218 ~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 218 SEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC--LSEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC--CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC--ccHHHHHHHHHHcCCCCHHHHHHHH
Confidence 123455565665432 11111 1111577899999999999988776433221 113456778888988 444555543
Q ss_pred H
Q 036584 411 G 411 (919)
Q Consensus 411 ~ 411 (919)
.
T Consensus 296 ~ 296 (357)
T 3d8b_A 296 R 296 (357)
T ss_dssp H
T ss_pred H
Confidence 3
No 178
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.18 E-value=4.7e-06 Score=93.35 Aligned_cols=180 Identities=17% Similarity=0.122 Sum_probs=102.0
Q ss_pred Ccc-ccccCH--HHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCC--CEEEEEEeCCCCCHHHHHHHHH
Q 036584 204 NPV-GFEDDT--DLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKF--DYCAWVSVSQDYKIKDLLLRII 278 (919)
Q Consensus 204 ~~v-Gr~~~~--~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~il 278 (919)
.|| |..... ..+......... ...+.|+|++|+||||||+.+++. ....+ ..+++++.. .+..++.
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~~------~~~~~~~ 176 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITSE------KFLNDLV 176 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEHH------HHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeHH------HHHHHHH
Confidence 455 644332 233333333322 668999999999999999999984 32222 224555543 2333444
Q ss_pred HHhcccccccccccCCHHHHHHHHHHHhccCceEEEEecccchh----HHHHHHhhCCC-CCCCcEEEEEecchh-----
Q 036584 279 KSFNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHKE----DWVSLKSAFPE-NKIGSRVIITTRIKD----- 348 (919)
Q Consensus 279 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----~~~~l~~~l~~-~~~gs~iivTtr~~~----- 348 (919)
..+... .. ..+.+.+..++-+|+|||++... ..+.+...+.. ...|..||+||....
T Consensus 177 ~~~~~~---------~~----~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~ 243 (440)
T 2z4s_A 177 DSMKEG---------KL----NEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSE 243 (440)
T ss_dssp HHHHTT---------CH----HHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSS
T ss_pred HHHHcc---------cH----HHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHH
Confidence 333221 11 12333344367899999997432 22333333221 134677888887532
Q ss_pred ----hhhhcCCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHH
Q 036584 349 ----VAERSDDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVV 408 (919)
Q Consensus 349 ----v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~ 408 (919)
+...+... ..+.+++++.++..+++.+.+...... -..++...|++.++|.+--+.-
T Consensus 244 l~~~L~sR~~~g-~~i~l~~p~~e~r~~iL~~~~~~~~~~--i~~e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 244 FQDRLVSRFQMG-LVAKLEPPDEETRKSIARKMLEIEHGE--LPEEVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp CCHHHHHHHHSS-BCCBCCCCCHHHHHHHHHHHHHHHTCC--CCTTHHHHHHHHCCSCHHHHHH
T ss_pred HHHHHHhhccCC-eEEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhcCCCHHHHHH
Confidence 22222221 468899999999999998876432211 1123466788888988865543
No 179
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.16 E-value=2.5e-05 Score=83.77 Aligned_cols=177 Identities=19% Similarity=0.150 Sum_probs=103.3
Q ss_pred CCccccccCHHHHHHHHhc----------CCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHH
Q 036584 203 ENPVGFEDDTDLLLAKLLD----------KEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKD 272 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 272 (919)
.+++|.++.++.+.+.+.. .....+.|.|+|++|+|||+||+.+++. .... .+.++.+ +
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~v~~~------~ 86 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANST---FFSVSSS------D 86 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCE---EEEEEHH------H
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCC---EEEEchH------H
Confidence 5689999999998887731 1223457999999999999999999984 3222 2223221 1
Q ss_pred HHHHHHHHhcccccccccccCCHHHHHHHHHHHh-ccCceEEEEecccchh-------------HHHHHHhhCC---CCC
Q 036584 273 LLLRIIKSFNIMTALEDLETKTEEDLARSLRKSL-EAYSYLMVIDDIWHKE-------------DWVSLKSAFP---ENK 335 (919)
Q Consensus 273 ~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~-------------~~~~l~~~l~---~~~ 335 (919)
+ .....+ ........+.+.. ..++.+|+||+++... ....+...+. ...
T Consensus 87 l----~~~~~g----------~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 152 (322)
T 3eie_A 87 L----VSKWMG----------ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 152 (322)
T ss_dssp H----HTTTGG----------GHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSC
T ss_pred H----hhcccc----------hHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccC
Confidence 1 111100 1122333333333 4567899999997431 1233333332 233
Q ss_pred CCcEEEEEecchhh-----hhhcCCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCc-chHHHHH
Q 036584 336 IGSRVIITTRIKDV-----AERSDDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGL-PLAIVVL 409 (919)
Q Consensus 336 ~gs~iivTtr~~~v-----~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~-PLal~~~ 409 (919)
.+..||.||..... ...+ ...+.++..+.++-.+++..++....... .......|++.+.|. +-.|..+
T Consensus 153 ~~v~vi~atn~~~~ld~al~~Rf---~~~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~~l~~la~~t~g~sg~di~~l 227 (322)
T 3eie_A 153 QGVLVLGATNIPWQLDSAIRRRF---ERRIYIPLPDLAARTTMFEINVGDTPCVL--TKEDYRTLGAMTEGYSGSDIAVV 227 (322)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHC---CEEEECCCCCHHHHHHHHHHHHTTCCCCC--CHHHHHHHHHTTTTCCHHHHHHH
T ss_pred CceEEEEecCChhhCCHHHHccc---CeEEEeCCCCHHHHHHHHHHHhccCCCCC--CHHHHHHHHHHcCCCCHHHHHHH
Confidence 45566667765322 2221 15778899999999999988775433211 123466788888874 4344433
No 180
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.15 E-value=8.1e-06 Score=93.63 Aligned_cols=190 Identities=15% Similarity=0.077 Sum_probs=108.1
Q ss_pred CCCccccccCHHHHHHHHhcCC---------------CCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCC
Q 036584 202 EENPVGFEDDTDLLLAKLLDKE---------------QRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQ 266 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~~~---------------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 266 (919)
-.+++|+++.++.+.+++.... ...+.+.|+|++|+||||+|+.+++.. .+ .++.++.+.
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~-~~i~in~s~ 112 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GY-DILEQNASD 112 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TC-EEEEECTTS
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CC-CEEEEeCCC
Confidence 3579999999999999997510 134689999999999999999999843 22 244455554
Q ss_pred CCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHH--HhccCceEEEEecccch-----hHHHHHHhhCCCCCCCcE
Q 036584 267 DYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRK--SLEAYSYLMVIDDIWHK-----EDWVSLKSAFPENKIGSR 339 (919)
Q Consensus 267 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~--~l~~~~~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~ 339 (919)
..... ++...+........ .. .......+ ...+++.+||||+++.. ..+..+...+... +..
T Consensus 113 ~~~~~-~~~~~i~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~ 181 (516)
T 1sxj_A 113 VRSKT-LLNAGVKNALDNMS---VV-----GYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STP 181 (516)
T ss_dssp CCCHH-HHHHTGGGGTTBCC---ST-----TTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSC
T ss_pred cchHH-HHHHHHHHHhcccc---HH-----HHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCC
Confidence 43332 22222222111110 00 00000000 11356789999999753 1234444333222 233
Q ss_pred EEEEecchh---hhhhcCCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcc-hHHHHHH
Q 036584 340 VIITTRIKD---VAERSDDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLP-LAIVVLG 410 (919)
Q Consensus 340 iivTtr~~~---v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~P-Lal~~~~ 410 (919)
||+++.... +.. .......+.+++++.++..+++...+....... ..+....|++.++|.+ -++..+.
T Consensus 182 iIli~~~~~~~~l~~-l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i--~~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 182 LILICNERNLPKMRP-FDRVCLDIQFRRPDANSIKSRLMTIAIREKFKL--DPNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp EEEEESCTTSSTTGG-GTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHTTTCHHHHHHHHT
T ss_pred EEEEEcCCCCccchh-hHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHHHHHHH
Confidence 555544322 222 222236789999999999999887764322211 1234677899999955 4455443
No 181
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.13 E-value=2.4e-05 Score=84.38 Aligned_cols=182 Identities=12% Similarity=0.045 Sum_probs=100.9
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccccc-c-cc
Q 036584 212 TDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTA-L-ED 289 (919)
Q Consensus 212 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-~-~~ 289 (919)
.+.+...+..+. -...+.++|++|+|||++|+.+++...-...-+ ...+..-...+.+...-..... . +.
T Consensus 11 ~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-------~~~c~~c~~c~~~~~~~~~d~~~~~~~ 82 (334)
T 1a5t_A 11 FEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRYLLCQQPQG-------HKSCGHCRGCQLMQAGTHPDYYTLAPE 82 (334)
T ss_dssp HHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-------TBCCSCSHHHHHHHHTCCTTEEEECCC
T ss_pred HHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHHHhCCCCCC-------CCCCCCCHHHHHHhcCCCCCEEEEecc
Confidence 445555555442 245789999999999999999987421111000 0000000011111111000000 0 00
Q ss_pred --cccCCHHHHHHHHHHHh-----ccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecchh-hhhhcCCCCce
Q 036584 290 --LETKTEEDLARSLRKSL-----EAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRIKD-VAERSDDRNYV 359 (919)
Q Consensus 290 --~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~~~~ 359 (919)
......+++. .+.+.+ .+++-++|+|+++.. +..+.+...+.....++.+|++|.+.. +...+......
T Consensus 83 ~~~~~~~i~~ir-~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~ 161 (334)
T 1a5t_A 83 KGKNTLGVDAVR-EVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRL 161 (334)
T ss_dssp TTCSSBCHHHHH-HHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred ccCCCCCHHHHH-HHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhccee
Confidence 0111223322 233332 355789999999854 455667777665555677777776543 33333333368
Q ss_pred EecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHH
Q 036584 360 HELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVL 409 (919)
Q Consensus 360 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~ 409 (919)
+.+.+++.++..+.+.+.. .. . .+.+..+++.++|.|..+..+
T Consensus 162 ~~~~~~~~~~~~~~L~~~~---~~-~---~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 162 HYLAPPPEQYAVTWLSREV---TM-S---QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp EECCCCCHHHHHHHHHHHC---CC-C---HHHHHHHHHHTTTCHHHHHHT
T ss_pred eeCCCCCHHHHHHHHHHhc---CC-C---HHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999999998775 11 1 244577999999999766544
No 182
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.12 E-value=5e-05 Score=83.83 Aligned_cols=181 Identities=14% Similarity=0.073 Sum_probs=100.1
Q ss_pred CCCccccccCHHHHHHHHhcC----------CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHH
Q 036584 202 EENPVGFEDDTDLLLAKLLDK----------EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIK 271 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 271 (919)
-.+++|.+..++.+..++... ....+.|.|+|++|+|||+||+.+++. .... .+.++.+.-..
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~~---~~~v~~~~l~~-- 186 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNAT---FFNISAASLTS-- 186 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTCE---EEEECSCCC----
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcCc---EEEeeHHHhhc--
Confidence 357899999999998888421 112468899999999999999999873 2222 23333332111
Q ss_pred HHHHHHHHHhcccccccccccCCHHHHHHHHHHHh-ccCceEEEEecccch-------------hHHHHHHhhCC---C-
Q 036584 272 DLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSL-EAYSYLMVIDDIWHK-------------EDWVSLKSAFP---E- 333 (919)
Q Consensus 272 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~-------------~~~~~l~~~l~---~- 333 (919)
.. .... ......+.... ...+.+|+||+++.. .....+...+. .
T Consensus 187 ~~-----------------~g~~-~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 248 (389)
T 3vfd_A 187 KY-----------------VGEG-EKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSA 248 (389)
T ss_dssp ----------------------C-HHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC--
T ss_pred cc-----------------cchH-HHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccccc
Confidence 00 0011 12222233322 445689999999743 11122222221 1
Q ss_pred CCCCcEEEEEecchh-hhhhc-CCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcch-HHHHH
Q 036584 334 NKIGSRVIITTRIKD-VAERS-DDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPL-AIVVL 409 (919)
Q Consensus 334 ~~~gs~iivTtr~~~-v~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PL-al~~~ 409 (919)
......||.||.... +.... .-....+.++..+.++..+++...+...... -..+....|++.+.|..- ++..+
T Consensus 249 ~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 249 GDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP--LTQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp ---CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC--SCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 122345555665432 11111 1111468899999999999998776443222 123456788888888654 44444
No 183
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.11 E-value=5.1e-05 Score=82.38 Aligned_cols=177 Identities=19% Similarity=0.173 Sum_probs=100.2
Q ss_pred CCccccccCHHHHHHHHhcC----------CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHH
Q 036584 203 ENPVGFEDDTDLLLAKLLDK----------EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKD 272 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 272 (919)
.+++|.+..++.+.+.+... ....+-|.|+|++|+|||+||+.+++. .... .+.++.+ +
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~---~~~v~~~------~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANST---FFSVSSS------D 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCE---EEEEEHH------H
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCC---EEEeeHH------H
Confidence 46899999988888877421 122346889999999999999999984 3222 2223222 1
Q ss_pred HHHHHHHHhcccccccccccCCHHHHHHHHHHHh-ccCceEEEEecccchh-------------HHHHHHhhCC---CCC
Q 036584 273 LLLRIIKSFNIMTALEDLETKTEEDLARSLRKSL-EAYSYLMVIDDIWHKE-------------DWVSLKSAFP---ENK 335 (919)
Q Consensus 273 ~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~-------------~~~~l~~~l~---~~~ 335 (919)
+ .... .... ......+.... ..++.+|+||+++... ....+...+. ...
T Consensus 120 l----~~~~---------~g~~-~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~ 185 (355)
T 2qp9_X 120 L----VSKW---------MGES-EKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 185 (355)
T ss_dssp H----HSCC------------C-HHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---
T ss_pred H----hhhh---------cchH-HHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccC
Confidence 1 1110 0111 22233333333 4578899999997531 1223332222 223
Q ss_pred CCcEEEEEecchh-----hhhhcCCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCc-chHHHHH
Q 036584 336 IGSRVIITTRIKD-----VAERSDDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGL-PLAIVVL 409 (919)
Q Consensus 336 ~gs~iivTtr~~~-----v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~-PLal~~~ 409 (919)
.+..||.||.... +... ....+.++..+.++..+++..++....... -......|++.+.|. +-.|..+
T Consensus 186 ~~v~vI~atn~~~~ld~al~rR---f~~~i~i~~P~~~~r~~il~~~l~~~~~~~--~~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 186 QGVLVLGATNIPWQLDSAIRRR---FERRIYIPLPDLAARTTMFEINVGDTPSVL--TKEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp CCEEEEEEESCGGGSCHHHHHT---CCEEEECCCCCHHHHHHHHHHHHTTSCBCC--CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCeEEEeecCCcccCCHHHHcc---cCEEEEeCCcCHHHHHHHHHHHHhhCCCCC--CHHHHHHHHHHcCCCCHHHHHHH
Confidence 3555666665442 2221 125778999999999999988765432211 123457788889884 4344443
No 184
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.07 E-value=0.00012 Score=77.47 Aligned_cols=177 Identities=15% Similarity=0.099 Sum_probs=100.7
Q ss_pred CCccccccCHHHHHHHHhcC----------CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHH
Q 036584 203 ENPVGFEDDTDLLLAKLLDK----------EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKD 272 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 272 (919)
.+++|.+..++.+.+.+... ....+.+.|+|++|+||||+|+.+++. .... .+.++.+.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~~---~~~i~~~~l~~--- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSAT---FLNISAASLTS--- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTCE---EEEEESTTTSS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEeeHHHHhh---
Confidence 56899999999888877431 113468899999999999999999984 2222 23344432110
Q ss_pred HHHHHHHHhcccccccccccCCHHHHHHHHHHHh-ccCceEEEEecccch-------------hHHHHHH---hhCCCC-
Q 036584 273 LLLRIIKSFNIMTALEDLETKTEEDLARSLRKSL-EAYSYLMVIDDIWHK-------------EDWVSLK---SAFPEN- 334 (919)
Q Consensus 273 ~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~-------------~~~~~l~---~~l~~~- 334 (919)
. . ..........+.... ..++.+|+||+++.. .....+. ..++..
T Consensus 93 -----------~-----~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 155 (297)
T 3b9p_A 93 -----------K-----Y-VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNP 155 (297)
T ss_dssp -----------S-----S-CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC---
T ss_pred -----------c-----c-cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccC
Confidence 0 0 011223333333333 456789999999643 1111222 223322
Q ss_pred -CCCcEEEEEecchh-----hhhhcCCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcch-HHH
Q 036584 335 -KIGSRVIITTRIKD-----VAERSDDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPL-AIV 407 (919)
Q Consensus 335 -~~gs~iivTtr~~~-----v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PL-al~ 407 (919)
+.+..||.||.... +...+ ...+.++..+.++..+++...+...... -..+....|++.+.|.+- ++.
T Consensus 156 ~~~~v~vi~~tn~~~~l~~~l~~R~---~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~~~~~la~~~~g~~~~~l~ 230 (297)
T 3b9p_A 156 DGDRIVVLAATNRPQELDEAALRRF---TKRVYVSLPDEQTRELLLNRLLQKQGSP--LDTEALRRLAKITDGYSGSDLT 230 (297)
T ss_dssp ---CEEEEEEESCGGGBCHHHHHHC---CEEEECCCCCHHHHHHHHHHHHGGGSCC--SCHHHHHHHHHHTTTCCHHHHH
T ss_pred CCCcEEEEeecCChhhCCHHHHhhC---CeEEEeCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHHHH
Confidence 23455666666532 22222 1567788888888888887765432211 113456778888999876 444
Q ss_pred HH
Q 036584 408 VL 409 (919)
Q Consensus 408 ~~ 409 (919)
.+
T Consensus 231 ~l 232 (297)
T 3b9p_A 231 AL 232 (297)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 185
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.04 E-value=3.7e-05 Score=82.60 Aligned_cols=166 Identities=14% Similarity=0.184 Sum_probs=92.0
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccC
Q 036584 214 LLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETK 293 (919)
Q Consensus 214 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~ 293 (919)
.+..++..+......+.|+|++|+||||||+.+++..... .+ .+++++.. .+...+...+.. .
T Consensus 25 ~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-~~-~~~~i~~~------~~~~~~~~~~~~---------~ 87 (324)
T 1l8q_A 25 VVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-GY-RVIYSSAD------DFAQAMVEHLKK---------G 87 (324)
T ss_dssp HHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-TC-CEEEEEHH------HHHHHHHHHHHH---------T
T ss_pred HHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-CC-EEEEEEHH------HHHHHHHHHHHc---------C
Confidence 3444444433245678999999999999999999842111 12 24555443 233333333321 0
Q ss_pred CHHHHHHHHHHHhccCceEEEEecccchh---H-HHHHHhhCCC-CCCCcEEEEEecchh---------hhhhcCCCCce
Q 036584 294 TEEDLARSLRKSLEAYSYLMVIDDIWHKE---D-WVSLKSAFPE-NKIGSRVIITTRIKD---------VAERSDDRNYV 359 (919)
Q Consensus 294 ~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---~-~~~l~~~l~~-~~~gs~iivTtr~~~---------v~~~~~~~~~~ 359 (919)
.... +...+ .++-+|+|||+.... . .+.+...+.. ...|..||+||.+.. +...+... ..
T Consensus 88 ~~~~----~~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~-~~ 161 (324)
T 1l8q_A 88 TINE----FRNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGG-IL 161 (324)
T ss_dssp CHHH----HHHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTS-EE
T ss_pred cHHH----HHHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCc-eE
Confidence 1111 22222 236799999997543 2 2233332221 123567888775432 12222111 56
Q ss_pred EecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHH
Q 036584 360 HELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAI 406 (919)
Q Consensus 360 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal 406 (919)
+.+++ +.++..+++...+...... --.+....|++.+ |.+-.+
T Consensus 162 i~l~~-~~~e~~~il~~~~~~~~~~--l~~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 162 VEIEL-DNKTRFKIIKEKLKEFNLE--LRKEVIDYLLENT-KNVREI 204 (324)
T ss_dssp EECCC-CHHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHC-SSHHHH
T ss_pred EEeCC-CHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHhC-CCHHHH
Confidence 89999 9999999998887533222 1134567788888 776543
No 186
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.98 E-value=5.7e-07 Score=98.58 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=18.8
Q ss_pred ccceEEeecCCCccc--cChhhhcCCCCcEEecCCC
Q 036584 643 IHLKYLGLRNSNIGI--LPSSIVKLQRLQTLDFSGD 676 (919)
Q Consensus 643 ~~Lr~L~L~~~~i~~--LP~~l~~L~~L~~L~L~~~ 676 (919)
.+|++|+|++|.|+. +..-...+.+|++|+|++|
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n 136 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN 136 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC
Confidence 466666666666632 1122233456666666666
No 187
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.97 E-value=7.7e-06 Score=76.35 Aligned_cols=111 Identities=17% Similarity=0.123 Sum_probs=65.9
Q ss_pred CccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCc-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 036584 204 NPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDV-KNKFDYCAWVSVSQDYKIKDLLLRIIKSFN 282 (919)
Q Consensus 204 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 282 (919)
.++|++..+.++.+.+..-......|.|+|++|+|||++|+.+++.... ...| + ++++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~---v-~~~~~~~~~------------ 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEF---V-YRELTPDNA------------ 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCC---E-EEECCTTTS------------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCE---E-EECCCCCcc------------
Confidence 5789999999999888653333446789999999999999999974211 2222 2 555432211
Q ss_pred ccccccccccCCHHHHHHHHHHHhccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecc
Q 036584 283 IMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRI 346 (919)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~ 346 (919)
..... .+. ....-.|+||+++.. +....+...+.......++|.||..
T Consensus 66 ----------~~~~~---~~~---~a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ----------PQLND---FIA---LAQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ----------SCHHH---HHH---HHTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ----------hhhhc---HHH---HcCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 00011 111 113457899999754 3344555555433445677777764
No 188
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.96 E-value=0.00016 Score=76.50 Aligned_cols=175 Identities=15% Similarity=0.144 Sum_probs=99.8
Q ss_pred CCccccccCHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHH
Q 036584 203 ENPVGFEDDTDLLLAKLLDK-----------EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIK 271 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 271 (919)
.+++|.++.++.+.+++... -...+.|.|+|++|+|||+||+.+++. .... ++.+. ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~-----~i~v~----~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIK----GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCE-----EEEEC----HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCC-----EEEEE----hH
Confidence 46889988888888776531 123567999999999999999999984 3222 23332 12
Q ss_pred HHHHHHHHHhcccccccccccCCHHHHHHHHHHHhccCceEEEEecccchh----------------HHHHHHhhCCC--
Q 036584 272 DLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHKE----------------DWVSLKSAFPE-- 333 (919)
Q Consensus 272 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~l~~-- 333 (919)
++.. ...+.. ...+...+.......+.+|+||+++... ....+...+..
T Consensus 84 ~l~~----~~~g~~---------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~ 150 (301)
T 3cf0_A 84 ELLT----MWFGES---------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 150 (301)
T ss_dssp HHHH----HHHTTC---------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC
T ss_pred HHHh----hhcCch---------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc
Confidence 2222 221111 1122222333334568999999997421 12334433322
Q ss_pred CCCCcEEEEEecchhhh-hh-cC--CCCceEecCCCChHhHHHHHHHHhccCCCC-chhhHHHHHHHHHHcCCcchH
Q 036584 334 NKIGSRVIITTRIKDVA-ER-SD--DRNYVHELRFLRQDESWQLFCERAFRNSKA-EKGLENLGREMVQKCDGLPLA 405 (919)
Q Consensus 334 ~~~gs~iivTtr~~~v~-~~-~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~~~~~~I~~~~~G~PLa 405 (919)
...+..||.||...+.. .. .. -....+.++..+.++-.+++.......... ... ...+++.+.|.|-+
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 151 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp TTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCHH
T ss_pred CCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCHH
Confidence 22356667677654322 11 11 122578899999999999987776432221 111 23566677777654
No 189
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.94 E-value=0.00013 Score=81.84 Aligned_cols=181 Identities=18% Similarity=0.153 Sum_probs=101.0
Q ss_pred CCccccccCHHHHHHHHhc----------CCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHH
Q 036584 203 ENPVGFEDDTDLLLAKLLD----------KEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKD 272 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 272 (919)
.+++|.++.++.+.+.+.. .....+.|.|+|++|+|||+||+.+++... . .-++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~-~-----~~~~~v~~~~---- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-N-----STFFSISSSD---- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC-S-----SEEEEECCC-----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC-C-----CCEEEEeHHH----
Confidence 5688999888888887732 112346899999999999999999998420 1 1233333221
Q ss_pred HHHHHHHHhcccccccccccCCHHHHHHHHHHHh-ccCceEEEEecccch-------------hHHHHHHhhCCC---CC
Q 036584 273 LLLRIIKSFNIMTALEDLETKTEEDLARSLRKSL-EAYSYLMVIDDIWHK-------------EDWVSLKSAFPE---NK 335 (919)
Q Consensus 273 ~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~-------------~~~~~l~~~l~~---~~ 335 (919)
+. ....+. ..... ..+.+.. ..++.+|+||+++.. .....+...+.. ..
T Consensus 204 l~----~~~~g~------~~~~~----~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 269 (444)
T 2zan_A 204 LV----SKWLGE------SEKLV----KNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 269 (444)
T ss_dssp ------------------CCCTH----HHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCC
T ss_pred HH----hhhcch------HHHHH----HHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCC
Confidence 11 111010 01111 2222222 456789999999753 112344444433 23
Q ss_pred CCcEEEEEecchhhhh-h-cCCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcc-hHHHHH
Q 036584 336 IGSRVIITTRIKDVAE-R-SDDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLP-LAIVVL 409 (919)
Q Consensus 336 ~gs~iivTtr~~~v~~-~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~P-Lal~~~ 409 (919)
.+..||.||....... . ..-....+.++..+.++...+|..++...... ........|++.+.|.. -.|..+
T Consensus 270 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~--l~~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 270 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNS--LTEADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp SSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEE--CCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 4566666765432111 1 11112577888889999999998876433211 11244677888898854 344443
No 190
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.93 E-value=6.3e-06 Score=89.47 Aligned_cols=43 Identities=16% Similarity=0.187 Sum_probs=26.8
Q ss_pred hhhhhhcccccceEEeecCCCc----------cccChhhhcCCCCcEEecCCC
Q 036584 634 RLSEKIGDLIHLKYLGLRNSNI----------GILPSSIVKLQRLQTLDFSGD 676 (919)
Q Consensus 634 ~lp~~i~~L~~Lr~L~L~~~~i----------~~LP~~l~~L~~L~~L~L~~~ 676 (919)
.+..++..+++|+.|.+..... ..++..+..+++|+.|+|++|
T Consensus 130 ~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~ 182 (362)
T 2ra8_A 130 GIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGT 182 (362)
T ss_dssp HHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECC
T ss_pred HHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCC
Confidence 3455567778888888865422 124444566677777777665
No 191
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.93 E-value=0.0001 Score=80.98 Aligned_cols=173 Identities=15% Similarity=0.156 Sum_probs=101.6
Q ss_pred CCCccccccCHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCH
Q 036584 202 EENPVGFEDDTDLLLAKLLDK-----------EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKI 270 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 270 (919)
=.++.|.++.+++|.+.+... -...+-|.++|++|+|||.||+.+++. .... .+.++.+.-.+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~---~~~v~~s~l~s- 253 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGAN---FIFSPASGIVD- 253 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCE---EEEEEGGGTCC-
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehhhhcc-
Confidence 356889998888887766531 234578999999999999999999984 3322 23344332111
Q ss_pred HHHHHHHHHHhcccccccccccCCHHHHHHHHHHHh-ccCceEEEEecccch----------------hHHHHHHhhCCC
Q 036584 271 KDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSL-EAYSYLMVIDDIWHK----------------EDWVSLKSAFPE 333 (919)
Q Consensus 271 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~ 333 (919)
..... ....++.+.... ...+++|++|+++.. .....++..+..
T Consensus 254 ------------------k~~Ge-se~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 314 (437)
T 4b4t_L 254 ------------------KYIGE-SARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDG 314 (437)
T ss_dssp ------------------SSSSH-HHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHS
T ss_pred ------------------ccchH-HHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhc
Confidence 00011 122333333333 567899999999732 012334444432
Q ss_pred --CCCCcEEEEEecchhhhhhc--CC--CCceEecCCCChHhHHHHHHHHhccCCCC-chhhHHHHHHHHHHcCCcc
Q 036584 334 --NKIGSRVIITTRIKDVAERS--DD--RNYVHELRFLRQDESWQLFCERAFRNSKA-EKGLENLGREMVQKCDGLP 403 (919)
Q Consensus 334 --~~~gs~iivTtr~~~v~~~~--~~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~~~~~~I~~~~~G~P 403 (919)
...+..||.||...+..... .. ....+.++.-+.++-.++|+.+....... ..+ ...|++.+.|.-
T Consensus 315 ~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 315 FDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp SSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred ccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 23356677777655433221 11 22578888888888888988776443221 112 356778887764
No 192
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.91 E-value=7.9e-05 Score=80.51 Aligned_cols=172 Identities=16% Similarity=0.124 Sum_probs=100.1
Q ss_pred CCccccccCHHHHHHHHhc-----------CCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHH
Q 036584 203 ENPVGFEDDTDLLLAKLLD-----------KEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIK 271 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 271 (919)
.++.|.++.+++|.+.+.- +-...+-|.++|++|+|||.||+.+++. ...+ .+.|+.+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~---f~~v~~s~l~s-- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCK---FIRVSGAELVQ-- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCE---EEEEEGGGGSC--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCC---ceEEEhHHhhc--
Confidence 5678999888888776643 1233567899999999999999999984 3333 23344332111
Q ss_pred HHHHHHHHHhcccccccccccCCHHHHHHHHHHHh-ccCceEEEEecccch------------h----HHHHHHhhCCC-
Q 036584 272 DLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSL-EAYSYLMVIDDIWHK------------E----DWVSLKSAFPE- 333 (919)
Q Consensus 272 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~------------~----~~~~l~~~l~~- 333 (919)
..-+. .+..++.+.... ...+++|++|+++.. . ....++..+..
T Consensus 221 -----------------k~vGe-se~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 282 (405)
T 4b4t_J 221 -----------------KYIGE-GSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF 282 (405)
T ss_dssp -----------------SSTTH-HHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT
T ss_pred -----------------cccch-HHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc
Confidence 00011 122333333333 567899999999732 0 12233333332
Q ss_pred -CCCCcEEEEEecchhhh---hh-cCCCCceEecCCCChHhHHHHHHHHhccCCCC-chhhHHHHHHHHHHcCCcc
Q 036584 334 -NKIGSRVIITTRIKDVA---ER-SDDRNYVHELRFLRQDESWQLFCERAFRNSKA-EKGLENLGREMVQKCDGLP 403 (919)
Q Consensus 334 -~~~gs~iivTtr~~~v~---~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~~~~~~I~~~~~G~P 403 (919)
...+..||.||...+.. -. -+-....+.++.-+.++-.++|+.+....... ..+ ..+|++.+.|.-
T Consensus 283 ~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 283 ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp TCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred CCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 23345566676544322 11 11223688999999999999998776432211 112 456778888765
No 193
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.89 E-value=0.00011 Score=81.27 Aligned_cols=143 Identities=14% Similarity=0.090 Sum_probs=65.6
Q ss_pred HHhhcCCCcEEEEeecCCCCccCcCCCCCCCCceeEEEceecCCCCcchhccCCCcceEEEEccCCCCCCchhhhcCCCC
Q 036584 756 SIAKLKNLRFLSVKLLDANSFASLQPLSHCQCLVDLRLSGRMKKLPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNL 835 (919)
Q Consensus 756 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L 835 (919)
.+..+.+|+.+.+... ...+ ....+..++.|+.+.+.... ++...+..+.+|+.+.+..+ +......++..+++|
T Consensus 248 ~f~~~~~l~~~~~~~~-~~~i-~~~~F~~~~~l~~~~~~~~~--i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L 322 (394)
T 4fs7_A 248 VFYGCTDLESISIQNN-KLRI-GGSLFYNCSGLKKVIYGSVI--VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSL 322 (394)
T ss_dssp TTTTCSSCCEEEECCT-TCEE-CSCTTTTCTTCCEEEECSSE--ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred cccccccceeEEcCCC-ccee-eccccccccccceeccCcee--eccccccccccccccccccc-cceechhhhcCCCCC
Confidence 3445555666555211 1111 11224445555555443321 22222222466777776544 332333456667777
Q ss_pred CeEEEeeccccCeeEE-EcCCCCcccceeEEecCCcccEEEc-cCCcccccceEEccccCccC-CcccccCCCCCCee
Q 036584 836 IILDLHFRCHYVKKLG-CRAEGFPLLEILQLDADGLVEWQVE-EGAMPVLRGLKIAAEIPKLK-IPERLRSVPPPAEW 910 (919)
Q Consensus 836 ~~L~L~~~~~~~~~~~-~~~~~f~~L~~L~l~~~~l~~~~~~-~~~~p~L~~L~l~~nC~~l~-lp~~l~~L~~L~~l 910 (919)
+.+.|. +.. ..+. ..+.++.+|+.+.|.. +++.+... ...+++|+++.+.. .++ +...+.++++|+.+
T Consensus 323 ~~i~lp-~~v--~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~lp~---~~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 323 VSIDLP-YLV--EEIGKRSFRGCTSLSNINFPL-SLRKIGANAFQGCINLKKVELPK---RLEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp CEECCC-TTC--CEECTTTTTTCTTCCEECCCT-TCCEECTTTBTTCTTCCEEEEEG---GGGGGGGGBCTTCEEEEE
T ss_pred CEEEeC-Ccc--cEEhHHhccCCCCCCEEEECc-cccEehHHHhhCCCCCCEEEECC---CCEEhhheecCCCCCcEE
Confidence 777765 221 1221 1234455666666642 24444211 12355666666654 233 44445555555543
No 194
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.88 E-value=6e-05 Score=81.58 Aligned_cols=175 Identities=10% Similarity=0.071 Sum_probs=101.7
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCC-EEEEEEeCCCCCHHHHHHHHHHHh
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFD-YCAWVSVSQDYKIKDLLLRIIKSF 281 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~il~~l 281 (919)
..++|.+..++.+..++..+. ...+.++|++|+||||+|+.+++... ...+. .+.-++.+....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~------------ 89 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRG------------ 89 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCS------------
T ss_pred HHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCccccc------------
Confidence 457888888888888887654 33389999999999999999987411 11111 112222221111
Q ss_pred cccccccccccCCHHHHHHHHHHHh------ccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecchh-hhhh
Q 036584 282 NIMTALEDLETKTEEDLARSLRKSL------EAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRIKD-VAER 352 (919)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~l~~~l------~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~ 352 (919)
.+.+.+.+.... .+.+-++|+|+++.. +..+.+...+......+++|++|.... +...
T Consensus 90 -------------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~ 156 (340)
T 1sxj_C 90 -------------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPA 156 (340)
T ss_dssp -------------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred -------------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchh
Confidence 122222222211 234678999999643 344455544433334566777765432 2111
Q ss_pred cCCCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHH
Q 036584 353 SDDRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIV 407 (919)
Q Consensus 353 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~ 407 (919)
.......+.+.+++.++..+.+.+.+-..... -..+..+.|++.++|.+--+.
T Consensus 157 i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~--i~~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 157 LLSQCTRFRFQPLPQEAIERRIANVLVHEKLK--LSPNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHTTTCC--BCHHHHHHHHHHHTTCHHHHH
T ss_pred HHhhceeEeccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 11222578899999999999887766322221 113456778899999887543
No 195
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.85 E-value=7.6e-06 Score=79.95 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=39.5
Q ss_pred CCCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcc
Q 036584 202 EENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
-..++||+++++.+.+.+.... .+.+.|+|++|+|||+||+.+++.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~--~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRT--KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS--SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999987743 456789999999999999999874
No 196
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.85 E-value=0.00012 Score=80.52 Aligned_cols=173 Identities=16% Similarity=0.137 Sum_probs=99.7
Q ss_pred CCCccccccCHHHHHHHHhc-----------CCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCH
Q 036584 202 EENPVGFEDDTDLLLAKLLD-----------KEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKI 270 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 270 (919)
=.++.|.++.+++|.+.+.. +-...+-|.+||++|+|||.||+.+++. .... .+.++.+.-.+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~---f~~v~~s~l~~- 253 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNAT---FLKLAAPQLVQ- 253 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCE---EEEEEGGGGCS-
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCC---EEEEehhhhhh-
Confidence 35688999988888776532 1234678999999999999999999984 3322 23333332110
Q ss_pred HHHHHHHHHHhcccccccccccCCHHHHHHHHHHHh-ccCceEEEEecccch-------h---------HHHHHHhhCCC
Q 036584 271 KDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSL-EAYSYLMVIDDIWHK-------E---------DWVSLKSAFPE 333 (919)
Q Consensus 271 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~-------~---------~~~~l~~~l~~ 333 (919)
...+ .....++.+.... ...+++|++|+++.. . ....++..+..
T Consensus 254 ------------------~~vG-ese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg 314 (434)
T 4b4t_M 254 ------------------MYIG-EGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDG 314 (434)
T ss_dssp ------------------SCSS-HHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTT
T ss_pred ------------------cccc-hHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhc
Confidence 0001 1123333333333 456899999998632 0 12234444443
Q ss_pred C--CCCcEEEEEecchhhhhhc--C--CCCceEecCCCChHhHHHHHHHHhccCCCC-chhhHHHHHHHHHHcCCcc
Q 036584 334 N--KIGSRVIITTRIKDVAERS--D--DRNYVHELRFLRQDESWQLFCERAFRNSKA-EKGLENLGREMVQKCDGLP 403 (919)
Q Consensus 334 ~--~~gs~iivTtr~~~v~~~~--~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~~~~~~I~~~~~G~P 403 (919)
. ..+..||.||...+..... . -....+.++..+.++-.++|+.+....... .-+ ..+|++.+.|.-
T Consensus 315 ~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 315 FSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFN 387 (434)
T ss_dssp SCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCC
T ss_pred cCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 2 2345566677655433221 1 112578898889998888987765432221 112 355778887754
No 197
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.83 E-value=0.00022 Score=73.63 Aligned_cols=178 Identities=14% Similarity=0.058 Sum_probs=91.9
Q ss_pred CCccccccCHHHHHHHHh---cC-------CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHH
Q 036584 203 ENPVGFEDDTDLLLAKLL---DK-------EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKD 272 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~---~~-------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 272 (919)
.+++|.+..++.+.+.+. .. ....+-+.|+|++|+||||||+.+++. .... .+.++.+.-..
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~i~~~~~~~--- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVP---FFTISGSDFVE--- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCC---EEEECSCSSTT---
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCC---EEEEeHHHHHH---
Confidence 467888777766655432 21 012345889999999999999999984 2222 23333221100
Q ss_pred HHHHHHHHhcccccccccccCCHHHHHHHHHHHhccCceEEEEecccch----------------hHHHHHHhhCCC--C
Q 036584 273 LLLRIIKSFNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHK----------------EDWVSLKSAFPE--N 334 (919)
Q Consensus 273 ~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~--~ 334 (919)
.........+...+.......+.++++|+++.. .....+...+.. .
T Consensus 84 ----------------~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (257)
T 1lv7_A 84 ----------------MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG 147 (257)
T ss_dssp ----------------SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS
T ss_pred ----------------HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc
Confidence 000111223333333333456789999998422 112223322221 2
Q ss_pred CCCcEEEEEecchhhh-hhc-C--CCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCC-cchHHH
Q 036584 335 KIGSRVIITTRIKDVA-ERS-D--DRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDG-LPLAIV 407 (919)
Q Consensus 335 ~~gs~iivTtr~~~v~-~~~-~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G-~PLal~ 407 (919)
..+..||.||...+.. ... . -....+.++..+.++-.+++..+.......++. ....++..+.| .+--+.
T Consensus 148 ~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~---~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 148 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI---DAAIIARGTPGFSGADLA 222 (257)
T ss_dssp SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCCHHHHH
T ss_pred CCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc---cHHHHHHHcCCCCHHHHH
Confidence 2345566666554321 111 1 112567788888888888887665332111111 12346667777 554333
No 198
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.82 E-value=4.8e-06 Score=79.25 Aligned_cols=87 Identities=9% Similarity=0.000 Sum_probs=61.8
Q ss_pred CCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccccCe-eEEEcCC---CCcccceeEEe-cCCcccEEE-ccCCccc
Q 036584 809 PNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHYVK-KLGCRAE---GFPLLEILQLD-ADGLVEWQV-EEGAMPV 882 (919)
Q Consensus 809 ~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~-~~~~~~~---~f~~L~~L~l~-~~~l~~~~~-~~~~~p~ 882 (919)
.+|+.|+|++|.++...+..+..+++|+.|+|++|..... .+..-.. ..++|++|+|+ |+++++-.. ....+|+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 4688899998888877777888899999999986543322 2111111 13579999998 888875322 1245899
Q ss_pred ccceEEccccCccC
Q 036584 883 LRGLKIAAEIPKLK 896 (919)
Q Consensus 883 L~~L~l~~nC~~l~ 896 (919)
|++|+|++ |++++
T Consensus 141 L~~L~L~~-c~~It 153 (176)
T 3e4g_A 141 LKYLFLSD-LPGVK 153 (176)
T ss_dssp CCEEEEES-CTTCC
T ss_pred CCEEECCC-CCCCC
Confidence 99999999 99887
No 199
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.81 E-value=1.3e-05 Score=87.31 Aligned_cols=71 Identities=17% Similarity=0.184 Sum_probs=33.2
Q ss_pred hccCceEEEEEeccCccccccccccchhhh-hhhcccccceEEeecCCCccccCh-hhhcCCCCcEEecCCCCCcccccC
Q 036584 607 FERFFLLRVFDVEADLDRESTLMHWSNRLS-EKIGDLIHLKYLGLRNSNIGILPS-SIVKLQRLQTLDFSGDVGCPVELP 684 (919)
Q Consensus 607 ~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp-~~i~~L~~Lr~L~L~~~~i~~LP~-~l~~L~~L~~L~L~~~~~~~~~lp 684 (919)
+..+.+|++|+|++++. +. .+| ..|++|.+|++|+|++|.|+.+|+ .+.+|++|+.|+|++| .+..+|
T Consensus 27 l~~~~~L~~L~l~~~n~-----l~---~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N--~l~~~~ 96 (347)
T 2ifg_A 27 LPGAENLTELYIENQQH-----LQ---HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN--ALESLS 96 (347)
T ss_dssp SCSCSCCSEEECCSCSS-----CC---EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS--CCSCCC
T ss_pred CCCCCCeeEEEccCCCC-----CC---CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC--ccceeC
Confidence 44444555555542133 33 332 334555555555555555544433 3455555555555555 444444
Q ss_pred ccc
Q 036584 685 IEI 687 (919)
Q Consensus 685 ~~i 687 (919)
..+
T Consensus 97 ~~~ 99 (347)
T 2ifg_A 97 WKT 99 (347)
T ss_dssp STT
T ss_pred HHH
Confidence 433
No 200
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.81 E-value=0.0002 Score=79.27 Aligned_cols=286 Identities=9% Similarity=0.034 Sum_probs=137.8
Q ss_pred cchhhhccCceEEEEEeccCccccccccccchhhh-hhhcccccceEEeecCCCccccCh-hhhcCCCCcEEecCCCCCc
Q 036584 602 HLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLS-EKIGDLIHLKYLGLRNSNIGILPS-SIVKLQRLQTLDFSGDVGC 679 (919)
Q Consensus 602 ~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp-~~i~~L~~Lr~L~L~~~~i~~LP~-~l~~L~~L~~L~L~~~~~~ 679 (919)
+-...|..|.+|+.+.|.. . ++ .++ ..+.++.+|+.++|..+ ++.++. .+..+.+|+.+.+..+
T Consensus 62 Ig~~AF~~c~~L~~i~lp~-~------i~---~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~--- 127 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPS-T------VR---EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM--- 127 (394)
T ss_dssp ECTTTTTTCTTEEEEECCT-T------CC---EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT---
T ss_pred hHHHHhhCCCCceEEEeCC-C------cc---CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc---
Confidence 3445677777888887764 2 33 343 34677788888887643 555544 4666777776665543
Q ss_pred ccccCcc-cccccccccccc---ccccccCCCCcCcCccccccccc-ccchhhccCCCCCCeEEeeecCccc--------
Q 036584 680 PVELPIE-INMMQELRHLIG---NFKGTLPIENLTNLQTLKYVQSK-SWNKVNTAKLVNLRDLHIEEDEDEW-------- 746 (919)
Q Consensus 680 ~~~lp~~-i~~L~~L~~L~~---~~~~~~~i~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~i~~~~~~~-------- 746 (919)
+..++.. +..+..+..... .......+..+++|+.+.+.... ......+..+.+|+.+.+..+-...
T Consensus 128 l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~ 207 (394)
T 4fs7_A 128 LKSIGVEAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAEC 207 (394)
T ss_dssp CCEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTC
T ss_pred eeeecceeeecccccccccCccccccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCCceEeCchhhccc
Confidence 2222221 122211111110 00111124444444444332211 1112223334444444332210000
Q ss_pred ----------cccccchhhHHhhcCCCcEEEEeecCCCCccCcCCCCCCCCceeEEEceecCCCCcchhccCCCcceEEE
Q 036584 747 ----------EGETVFSFESIAKLKNLRFLSVKLLDANSFASLQPLSHCQCLVDLRLSGRMKKLPEDMHVFLPNLECLSL 816 (919)
Q Consensus 747 ----------~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~p~~~~~l~~~L~~L~L 816 (919)
..... . .......+|+.+.+.. ....+ +-..+..+..|+.+.+..+...++...+..+.+++.+.+
T Consensus 208 ~~L~~i~~~~~~~~i-~-~~~~~~~~l~~i~ip~-~~~~i-~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~ 283 (394)
T 4fs7_A 208 ILLENMEFPNSLYYL-G-DFALSKTGVKNIIIPD-SFTEL-GKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIY 283 (394)
T ss_dssp TTCCBCCCCTTCCEE-C-TTTTTTCCCCEEEECT-TCCEE-CSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEE
T ss_pred cccceeecCCCceEe-e-hhhcccCCCceEEECC-Cceec-ccccccccccceeEEcCCCcceeeccccccccccceecc
Confidence 00000 0 1112234555555421 01111 112245566777777765543333333333466776666
Q ss_pred EccCCCCCCchhhhcCCCCCeEEEeeccccCeeEE-EcCCCCcccceeEEecCCcccEEEcc-CCcccccceEEccccCc
Q 036584 817 SVPYPKEDPMPALEMLPNLIILDLHFRCHYVKKLG-CRAEGFPLLEILQLDADGLVEWQVEE-GAMPVLRGLKIAAEIPK 894 (919)
Q Consensus 817 ~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~-~~~~~f~~L~~L~l~~~~l~~~~~~~-~~~p~L~~L~l~~nC~~ 894 (919)
....+. ...+..+++|+.+.+. +.. ..+. ....++.+|+.+.|. +.++.+.... ..+.+|+.+.+.. .
T Consensus 284 ~~~~i~---~~~F~~~~~L~~i~l~-~~i--~~I~~~aF~~c~~L~~i~lp-~~v~~I~~~aF~~c~~L~~i~lp~---~ 353 (394)
T 4fs7_A 284 GSVIVP---EKTFYGCSSLTEVKLL-DSV--KFIGEEAFESCTSLVSIDLP-YLVEEIGKRSFRGCTSLSNINFPL---S 353 (394)
T ss_dssp CSSEEC---TTTTTTCTTCCEEEEC-TTC--CEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCTTCCEECCCT---T
T ss_pred Cceeec---cccccccccccccccc-ccc--ceechhhhcCCCCCCEEEeC-CcccEEhHHhccCCCCCCEEEECc---c
Confidence 554432 2356678888888886 322 1221 223456778887775 3456553211 2356788887764 2
Q ss_pred cC-Ccc-cccCCCCCCeeEeccc
Q 036584 895 LK-IPE-RLRSVPPPAEWECEDS 915 (919)
Q Consensus 895 l~-lp~-~l~~L~~L~~l~~~~~ 915 (919)
++ ++. .+..+++|+.+.+...
T Consensus 354 l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 354 LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCEECTTTBTTCTTCCEEEEEGG
T ss_pred ccEehHHHhhCCCCCCEEEECCC
Confidence 55 543 5788888988888653
No 201
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=8.1e-05 Score=81.69 Aligned_cols=174 Identities=18% Similarity=0.156 Sum_probs=94.5
Q ss_pred CCCCccccccCHHHHHHHHhc-----------CCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCC
Q 036584 201 VEENPVGFEDDTDLLLAKLLD-----------KEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYK 269 (919)
Q Consensus 201 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 269 (919)
.-.++.|.++.+++|.+.+.. +-...+-|.++|++|+|||+||+.+++. ...+ .+.++.++-.+
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~--~~~~---~~~v~~~~l~~ 244 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS--TKAA---FIRVNGSEFVH 244 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH--HTCE---EEEEEGGGTCC
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---eEEEecchhhc
Confidence 335788999998888776643 1234567999999999999999999984 3323 23344332111
Q ss_pred HHHHHHHHHHHhcccccccccccCCHHHHHHHHHHHh-ccCceEEEEecccch------------h----HHHHHHhhCC
Q 036584 270 IKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSL-EAYSYLMVIDDIWHK------------E----DWVSLKSAFP 332 (919)
Q Consensus 270 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~------------~----~~~~l~~~l~ 332 (919)
..-+. ....++.+.... ...+++|++|+++.. . ....++..+.
T Consensus 245 -------------------~~~Ge-~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ld 304 (428)
T 4b4t_K 245 -------------------KYLGE-GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMD 304 (428)
T ss_dssp -------------------SSCSH-HHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHH
T ss_pred -------------------cccch-hHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhh
Confidence 00011 122233333333 467899999998632 0 1223333332
Q ss_pred C--CCCCcEEEEEecchhhh---hhc-CCCCceEecCCCC-hHhHHHHHHHHhccCCCC-chhhHHHHHHHHHHcCCcc
Q 036584 333 E--NKIGSRVIITTRIKDVA---ERS-DDRNYVHELRFLR-QDESWQLFCERAFRNSKA-EKGLENLGREMVQKCDGLP 403 (919)
Q Consensus 333 ~--~~~gs~iivTtr~~~v~---~~~-~~~~~~~~l~~L~-~~~~~~lf~~~~~~~~~~-~~~~~~~~~~I~~~~~G~P 403 (919)
. ...+..||.||...+.. -.- +-....+.++.++ .++-..+|..+....... ..+ ...|++.+.|.-
T Consensus 305 g~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 305 GFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp HSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTCC
T ss_pred CCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCCC
Confidence 2 23355666677544321 111 1112467776665 445555666555332211 112 356777787764
No 202
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.77 E-value=0.00028 Score=77.22 Aligned_cols=172 Identities=15% Similarity=0.103 Sum_probs=98.9
Q ss_pred CCccccccCHHHHHHHHhc-----------CCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHH
Q 036584 203 ENPVGFEDDTDLLLAKLLD-----------KEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIK 271 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 271 (919)
.++.|.++.+++|.+.+.- +-...+-|.++|++|+|||.||+.+++. .... .+.++.+.-.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~---fi~vs~s~L~s-- 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDAT---FIRVIGSELVQ-- 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCE---EEEEEGGGGCC--
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCC---eEEEEhHHhhc--
Confidence 4688999888888776532 1234678999999999999999999984 3333 23343332110
Q ss_pred HHHHHHHHHhcccccccccccCCHHHHHHHHHHHh-ccCceEEEEecccch------------h----HHHHHHhhCCC-
Q 036584 272 DLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSL-EAYSYLMVIDDIWHK------------E----DWVSLKSAFPE- 333 (919)
Q Consensus 272 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~------------~----~~~~l~~~l~~- 333 (919)
..-.. .+..++.+.... ...+++|++|+++.. . ....++..+..
T Consensus 282 -----------------k~vGe-sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 343 (467)
T 4b4t_H 282 -----------------KYVGE-GARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGF 343 (467)
T ss_dssp -----------------CSSSH-HHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSS
T ss_pred -----------------ccCCH-HHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhcc
Confidence 00011 122333333333 567899999998732 0 11223333322
Q ss_pred -CCCCcEEEEEecchhhhh---h-cCCCCceEecCCCChHhHHHHHHHHhccCCCC-chhhHHHHHHHHHHcCCcc
Q 036584 334 -NKIGSRVIITTRIKDVAE---R-SDDRNYVHELRFLRQDESWQLFCERAFRNSKA-EKGLENLGREMVQKCDGLP 403 (919)
Q Consensus 334 -~~~gs~iivTtr~~~v~~---~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~~~~~~I~~~~~G~P 403 (919)
...+..||.||...+... . -+-....+.++..+.++-.++|+.+....... .-+ ...|++.|.|.-
T Consensus 344 ~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 344 DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp CCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred CCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 223445566665443221 1 11223788899999999999998776433221 112 355778888764
No 203
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.75 E-value=0.00027 Score=76.63 Aligned_cols=172 Identities=15% Similarity=0.130 Sum_probs=98.5
Q ss_pred CCccccccCHHHHHHHHhc-----------CCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHH
Q 036584 203 ENPVGFEDDTDLLLAKLLD-----------KEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIK 271 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 271 (919)
.++.|.++.+++|.+.+.. +-...+-|.++|++|+|||.||+.+++. .... .+.++.++-.+
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~---fi~v~~s~l~s-- 254 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSAT---FLRIVGSELIQ-- 254 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCE---EEEEESGGGCC--
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCC---EEEEEHHHhhh--
Confidence 4677898888888776643 1124578999999999999999999984 3323 23333331100
Q ss_pred HHHHHHHHHhcccccccccccCCHHHHHHHHHHHh-ccCceEEEEecccch----------------hHHHHHHhhCC--
Q 036584 272 DLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSL-EAYSYLMVIDDIWHK----------------EDWVSLKSAFP-- 332 (919)
Q Consensus 272 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~----------------~~~~~l~~~l~-- 332 (919)
..-. ..+..++.+.... ...+++|++|+++.. .....++..+.
T Consensus 255 -----------------k~vG-esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~ 316 (437)
T 4b4t_I 255 -----------------KYLG-DGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGF 316 (437)
T ss_dssp -----------------SSSS-HHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHC
T ss_pred -----------------ccCc-hHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCc
Confidence 0001 1123334444433 456899999998732 01223333332
Q ss_pred CCCCCcEEEEEecchhhhhhc--C--CCCceEecCCCChHhHHHHHHHHhccCCCC-chhhHHHHHHHHHHcCCcc
Q 036584 333 ENKIGSRVIITTRIKDVAERS--D--DRNYVHELRFLRQDESWQLFCERAFRNSKA-EKGLENLGREMVQKCDGLP 403 (919)
Q Consensus 333 ~~~~gs~iivTtr~~~v~~~~--~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~~~~~~I~~~~~G~P 403 (919)
....+..||.||...+..... . -....+.++.-+.++-.++|+.+....... ..+ ...|++.+.|.-
T Consensus 317 ~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 317 DDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp CCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCC
T ss_pred CCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 223345566677655433221 1 112567888888888889998776432221 112 355777787764
No 204
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.74 E-value=0.001 Score=71.53 Aligned_cols=173 Identities=21% Similarity=0.177 Sum_probs=93.1
Q ss_pred CCccccccCHHHHHHHHhcC---CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 036584 203 ENPVGFEDDTDLLLAKLLDK---EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIK 279 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 279 (919)
..++|.+..++.+...+..+ ......+.|+|++|+||||||+.+++. ....|. ..+ ++...
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~~---~~s-g~~~~---------- 88 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNIH---VTS-GPVLV---------- 88 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCEE---EEE-TTTCC----------
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCEE---EEe-chHhc----------
Confidence 45778777667666666542 223467899999999999999999983 222211 111 11100
Q ss_pred HhcccccccccccCCHHHHHHHHHHHhccCceEEEEecccch--hHHHHHHhhCCCC--------C----------CCcE
Q 036584 280 SFNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHK--EDWVSLKSAFPEN--------K----------IGSR 339 (919)
Q Consensus 280 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~--------~----------~gs~ 339 (919)
...++.. +...+ .++-++++|++... ...+.+...+... + ....
T Consensus 89 --------------~~~~l~~-~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 89 --------------KQGDMAA-ILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp --------------SHHHHHH-HHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCE
T ss_pred --------------CHHHHHH-HHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeE
Confidence 0111111 11112 23457788887643 2223332211110 0 0112
Q ss_pred EE-EEecchhhhhhcCCC-CceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHH
Q 036584 340 VI-ITTRIKDVAERSDDR-NYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVL 409 (919)
Q Consensus 340 ii-vTtr~~~v~~~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~ 409 (919)
++ .|++...+....... ...+.+++.+.++-.+++.+.+..... ....+.+..|+++++|.|-.+..+
T Consensus 153 li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~--~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 153 LVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV--EIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC--CBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred EEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHhcCCChHHHHHH
Confidence 22 344433322221111 135789999999999999887643222 222456888999999999755433
No 205
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.74 E-value=3.5e-05 Score=83.74 Aligned_cols=91 Identities=16% Similarity=0.060 Sum_probs=72.4
Q ss_pred CCccccccC-CCcccEEEEec-ccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhhhhcccccceEE
Q 036584 571 PSYFWLHHG-NSLARSLLLFN-QWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYL 648 (919)
Q Consensus 571 ~~~~~~~~~-~~~lrsL~~~~-~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L 648 (919)
...++. .. +.+|+.|.+.+ + .+....+..|..+++|++|+|++ |. +.. ..|..|++|++|++|
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n------~l~~~~~~~~~~l~~L~~L~l~~-N~-----l~~--~~~~~~~~l~~L~~L 85 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQ------HLQHLELRDLRGLGELRNLTIVK-SG-----LRF--VAPDAFHFTPRLSRL 85 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCS------SCCEECGGGSCSCCCCSEEECCS-SC-----CCE--ECTTGGGSCSCCCEE
T ss_pred CCccCC-CCCCCCeeEEEccCCC------CCCCcChhHhccccCCCEEECCC-Cc-----cce--eCHHHhcCCcCCCEE
Confidence 444554 23 77899999986 5 23445667899999999999999 88 772 345578999999999
Q ss_pred eecCCCccccChhhhcCCCCcEEecCCC
Q 036584 649 GLRNSNIGILPSSIVKLQRLQTLDFSGD 676 (919)
Q Consensus 649 ~L~~~~i~~LP~~l~~L~~L~~L~L~~~ 676 (919)
+|++|.|+.+|..+.....|+.|+|.+|
T Consensus 86 ~l~~N~l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 86 NLSFNALESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp ECCSSCCSCCCSTTTCSCCCCEEECCSS
T ss_pred eCCCCccceeCHHHcccCCceEEEeeCC
Confidence 9999999999986655445999999999
No 206
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.73 E-value=2.4e-05 Score=85.64 Aligned_cols=58 Identities=14% Similarity=0.186 Sum_probs=32.8
Q ss_pred ceEEEEEeccCccccccccccchhhhhhh-cccccceEEeecCCCccccC-----hhh-hcCCCCcEEecCCC
Q 036584 611 FLLRVFDVEADLDRESTLMHWSNRLSEKI-GDLIHLKYLGLRNSNIGILP-----SSI-VKLQRLQTLDFSGD 676 (919)
Q Consensus 611 ~~LrvL~L~~~~~~~~~~i~~~~~lp~~i-~~L~~Lr~L~L~~~~i~~LP-----~~l-~~L~~L~~L~L~~~ 676 (919)
+.|++|+|++ |. +.. .-...+ ..+.+|++|+|++|.|+..+ ..+ ...++|++|+|++|
T Consensus 101 ~~L~~L~Ls~-n~-----l~~--~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n 165 (372)
T 3un9_A 101 HALDEVNLAS-CQ-----LDP--AGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN 165 (372)
T ss_dssp SCEEEEECTT-CC-----CCH--HHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS
T ss_pred CCceEEEecC-CC-----CCH--HHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCC
Confidence 5777777777 65 542 112222 34566777777777764322 122 23566777777777
No 207
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.72 E-value=0.00018 Score=75.96 Aligned_cols=146 Identities=16% Similarity=0.069 Sum_probs=89.4
Q ss_pred ccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccC-cc-CCCCEEEEEEeCC-CCCHHHHHHHHHHHhcc
Q 036584 207 GFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNND-VK-NKFDYCAWVSVSQ-DYKIKDLLLRIIKSFNI 283 (919)
Q Consensus 207 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~-~~-~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~ 283 (919)
|-++.++.+.+.+..+. .....++|++|+||||+|+.+++... .. .+.+ ..++..+. .... +.+++++..+..
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~i-d~ir~li~~~~~ 76 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGI-DDIRTIKDFLNY 76 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCH-HHHHHHHHHHTS
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCH-HHHHHHHHHHhh
Confidence 33455667777776654 67899999999999999999987311 11 2333 34444332 1121 112333333221
Q ss_pred cccccccccCCHHHHHHHHHHHhccCceEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecch-hhhhhcCCCCceE
Q 036584 284 MTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRIK-DVAERSDDRNYVH 360 (919)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~~~~ 360 (919)
.. ..+++-++|+|+++.. +..+.++..+-.....+.+|++|.+. .+...+... .+
T Consensus 77 ~p--------------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR--~~ 134 (305)
T 2gno_A 77 SP--------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR--VF 134 (305)
T ss_dssp CC--------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT--SE
T ss_pred cc--------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce--eE
Confidence 10 1245679999999854 45667777766555577777776543 333333343 89
Q ss_pred ecCCCChHhHHHHHHHHh
Q 036584 361 ELRFLRQDESWQLFCERA 378 (919)
Q Consensus 361 ~l~~L~~~~~~~lf~~~~ 378 (919)
++.+++.++..+.+.+..
T Consensus 135 ~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 135 RVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEECCCCHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHh
Confidence 999999999999998775
No 208
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.71 E-value=3.5e-05 Score=87.00 Aligned_cols=148 Identities=15% Similarity=0.146 Sum_probs=79.4
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCc---cCCC-C-EEEEEEeCCCCCHHHHHHHH
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDV---KNKF-D-YCAWVSVSQDYKIKDLLLRI 277 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~---~~~f-~-~~~wv~~~~~~~~~~~~~~i 277 (919)
+.+|||+++++.+...|.... ..-+.|+|++|+|||++|+.+++.... .... + ..+.++.+
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~------------ 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG------------ 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC------------
Confidence 569999999999999997643 345689999999999999999874110 0011 1 12222222
Q ss_pred HHHhcccccccccccCCHHHHHHHHHHHhccCceEEEEecccchhHHHHHHhhCCCCCCCcEEEEEecchhhhhh-----
Q 036584 278 IKSFNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHKEDWVSLKSAFPENKIGSRVIITTRIKDVAER----- 352 (919)
Q Consensus 278 l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~----- 352 (919)
....+ .. ......+.. ..-..++.+|++| ...+....+...+..+ ..++|.+|...+....
T Consensus 246 -~~~~g-----~~-e~~~~~~~~---~~~~~~~~iLfiD--~~~~a~~~L~~~L~~g--~v~vI~at~~~e~~~~~~~~~ 311 (468)
T 3pxg_A 246 -TKYRG-----EF-EDRLKKVMD---EIRQAGNIILFID--AAIDASNILKPSLARG--ELQCIGATTLDEYRKYIEKDA 311 (468)
T ss_dssp --------------CTTHHHHHH---HHHTCCCCEEEEC--C--------CCCTTSS--SCEEEEECCTTTTHHHHTTCS
T ss_pred -ccccc-----hH-HHHHHHHHH---HHHhcCCeEEEEe--CchhHHHHHHHhhcCC--CEEEEecCCHHHHHHHhhcCH
Confidence 00000 00 011122222 2223567899999 2222222333333322 3556666554431111
Q ss_pred -cCCCCceEecCCCChHhHHHHHHHHh
Q 036584 353 -SDDRNYVHELRFLRQDESWQLFCERA 378 (919)
Q Consensus 353 -~~~~~~~~~l~~L~~~~~~~lf~~~~ 378 (919)
.......+.++..+.++..+++....
T Consensus 312 al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 312 ALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp HHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 11111578999999999999998654
No 209
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.71 E-value=0.00019 Score=80.94 Aligned_cols=173 Identities=12% Similarity=0.097 Sum_probs=99.0
Q ss_pred CCccccccCHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHH
Q 036584 203 ENPVGFEDDTDLLLAKLLDK-----------EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIK 271 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 271 (919)
..++|.+..++++.+++... ....+-|.|+|++|+|||++|+.+++. .... .+.++.+
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~---fv~vn~~------ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGP------ 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSE---EEEEEHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCC---EEEEEch------
Confidence 46899999999998887642 233557899999999999999999883 3222 2333321
Q ss_pred HHHHHHHHHhcccccccccccCCHHHHHHHHHHHhccCceEEEEecccch-------------hHHHHHHhhCCC--CCC
Q 036584 272 DLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHK-------------EDWVSLKSAFPE--NKI 336 (919)
Q Consensus 272 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~l~~--~~~ 336 (919)
++...+. ......+...+.....+++.+|+||+++.. .....+...+.. ...
T Consensus 273 ----~l~~~~~---------g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~ 339 (489)
T 3hu3_A 273 ----EIMSKLA---------GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (489)
T ss_dssp ----HHHTSCT---------THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTS
T ss_pred ----Hhhhhhc---------chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCC
Confidence 1111111 011122333333444567889999999421 112233333321 223
Q ss_pred CcEEEEEecchhh-hhhcC---CCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCc
Q 036584 337 GSRVIITTRIKDV-AERSD---DRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGL 402 (919)
Q Consensus 337 gs~iivTtr~~~v-~~~~~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~ 402 (919)
+..||.||..... ..... .....+.++..+.++-.+++..++.......+ ....++++.+.|.
T Consensus 340 ~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~---~~l~~la~~t~g~ 406 (489)
T 3hu3_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD---VDLEQVANETHGH 406 (489)
T ss_dssp CEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTT---CCHHHHHHTCTTC
T ss_pred ceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcch---hhHHHHHHHccCC
Confidence 4555656654422 11111 12257889999999999999887643322111 1134566777765
No 210
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.70 E-value=0.00018 Score=76.63 Aligned_cols=47 Identities=28% Similarity=0.374 Sum_probs=37.2
Q ss_pred CCccccccCHHHHHHHHhcC------------CCCcEEEEEEecCCchHHHHHHHHHcc
Q 036584 203 ENPVGFEDDTDLLLAKLLDK------------EQRRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..++|.++.++.+...+... ......+.|+|++|+|||++|+.+++.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46889998888888777541 122456889999999999999999984
No 211
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.65 E-value=0.00029 Score=78.77 Aligned_cols=174 Identities=16% Similarity=0.085 Sum_probs=96.5
Q ss_pred CCccccccCHHHHHHHHhc---C-------CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHH
Q 036584 203 ENPVGFEDDTDLLLAKLLD---K-------EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKD 272 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~---~-------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 272 (919)
.+++|.++.++++.+.+.. . -.-.+-|.|+|++|+|||+||+.+++. ....| +.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~f---~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVPF---FHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCCE---EEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCCe---eeCCHHHHHHH--
Confidence 4688888877776655432 1 112345889999999999999999984 33222 33333321110
Q ss_pred HHHHHHHHhcccccccccccCCHHHHHHHHHHHhccCceEEEEecccch----------------hHHHHHHhhCCC--C
Q 036584 273 LLLRIIKSFNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHK----------------EDWVSLKSAFPE--N 334 (919)
Q Consensus 273 ~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~--~ 334 (919)
+ ...........+.......+.+|+||+++.. .....+...+.. .
T Consensus 89 --------~---------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~ 151 (476)
T 2ce7_A 89 --------F---------VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS 151 (476)
T ss_dssp --------C---------TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG
T ss_pred --------H---------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC
Confidence 0 0001112223333444567899999999642 122333333321 1
Q ss_pred CCCcEEEEEecchhhhh--hcC--CCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcc
Q 036584 335 KIGSRVIITTRIKDVAE--RSD--DRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLP 403 (919)
Q Consensus 335 ~~gs~iivTtr~~~v~~--~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 403 (919)
..+..||.||...+... ... -....+.++..+.++-.+++..++.......+ . ....|++.+.|..
T Consensus 152 ~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~-v--~l~~la~~t~G~s 221 (476)
T 2ce7_A 152 KEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAED-V--NLEIIAKRTPGFV 221 (476)
T ss_dssp GGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT-C--CHHHHHHTCTTCC
T ss_pred CCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcch-h--hHHHHHHhcCCCc
Confidence 23556677776654322 111 12247888888888888888776643221111 1 1344788888887
No 212
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.65 E-value=0.00028 Score=73.27 Aligned_cols=62 Identities=16% Similarity=0.088 Sum_probs=40.4
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCC
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQ 266 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 266 (919)
+.++|.+..+..+.+.+.........|.|+|.+|+|||++|+.+++. ....-...+.++++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~--~~~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL--SSRWQGPFISLNCAA 67 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT--STTTTSCEEEEEGGG
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh--cCccCCCeEEEecCC
Confidence 35789999888888777653223356889999999999999999974 221112245555554
No 213
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.63 E-value=3e-05 Score=72.10 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=34.4
Q ss_pred CccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcc
Q 036584 204 NPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 204 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
.++|++..++++.+.+..-......|.|+|.+|+|||++|+.+++.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 5789998888888887652222345789999999999999999874
No 214
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.61 E-value=9.7e-05 Score=90.17 Aligned_cols=155 Identities=13% Similarity=0.095 Sum_probs=83.2
Q ss_pred CCCCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCc---cCC--CCEEEEEEeCCCCCHHHHHH
Q 036584 201 VEENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDV---KNK--FDYCAWVSVSQDYKIKDLLL 275 (919)
Q Consensus 201 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~---~~~--f~~~~wv~~~~~~~~~~~~~ 275 (919)
.-+.++||++++..++..|.... ..-+.|+|++|+||||+|+.+++.... ... -..+++++++.-..
T Consensus 168 ~ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------ 239 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------ 239 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------
T ss_pred CCcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc------
Confidence 34569999999999999997753 345789999999999999999874211 011 12244444321100
Q ss_pred HHHHHhcccccccccccCCHHHHHHHHHHHhc--cCceEEEEecccchh-------HHH---HHHhhCCCCCCCcEEEEE
Q 036584 276 RIIKSFNIMTALEDLETKTEEDLARSLRKSLE--AYSYLMVIDDIWHKE-------DWV---SLKSAFPENKIGSRVIIT 343 (919)
Q Consensus 276 ~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~-------~~~---~l~~~l~~~~~gs~iivT 343 (919)
+. .... ........+.+.+. +++.+|++|+++... .++ .+...+..+ +..+|.+
T Consensus 240 -------g~----~~~g-~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~--~i~~I~a 305 (854)
T 1qvr_A 240 -------GA----KYRG-EFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG--ELRLIGA 305 (854)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTT--CCCEEEE
T ss_pred -------cC----ccch-HHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC--CeEEEEe
Confidence 00 0000 12222233333332 367899999997542 121 233333221 3345555
Q ss_pred ecchhh-----hhhcCCCCceEecCCCChHhHHHHHHHH
Q 036584 344 TRIKDV-----AERSDDRNYVHELRFLRQDESWQLFCER 377 (919)
Q Consensus 344 tr~~~v-----~~~~~~~~~~~~l~~L~~~~~~~lf~~~ 377 (919)
|...+. ..........+.+++++.++..+++...
T Consensus 306 t~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 306 TTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp ECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred cCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 543332 1111122246899999999999998654
No 215
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.58 E-value=5e-05 Score=73.75 Aligned_cols=99 Identities=23% Similarity=0.264 Sum_probs=53.8
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKS 305 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 305 (919)
...+.|+|++|+||||||+.+++.......+. +++++ ..++...+........ . .... +.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~~------~~~~~~~~~~~~~~~~-------~--~~~~----~~ 97 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFFD------TKDLIFRLKHLMDEGK-------D--TKFL----KT 97 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEEE------HHHHHHHHHHHHHHTC-------C--SHHH----HH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEEE------HHHHHHHHHHHhcCch-------H--HHHH----HH
Confidence 46899999999999999999997432122221 33433 3344444443332211 0 0111 22
Q ss_pred hccCceEEEEecccc--hhHHH--HHHhhCCC-CCCCcEEEEEec
Q 036584 306 LEAYSYLMVIDDIWH--KEDWV--SLKSAFPE-NKIGSRVIITTR 345 (919)
Q Consensus 306 l~~~~~LlVlDdv~~--~~~~~--~l~~~l~~-~~~gs~iivTtr 345 (919)
+. ++-+|||||++. .+.|. .+...+.. ...|..+|+||.
T Consensus 98 ~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn 141 (180)
T 3ec2_A 98 VL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTN 141 (180)
T ss_dssp HH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred hc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 22 467999999973 33332 22222221 124677888886
No 216
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.55 E-value=0.00021 Score=76.11 Aligned_cols=62 Identities=16% Similarity=0.219 Sum_probs=42.4
Q ss_pred CCccccccCHHHHHHHHhcC-------CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCC
Q 036584 203 ENPVGFEDDTDLLLAKLLDK-------EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQ 266 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 266 (919)
..++|.+..++.+...+... ......+.|+|++|+|||++|+.+++. ....-...+.+.++.
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTE 85 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGG
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeeccc
Confidence 35778888888887777653 112358999999999999999999973 222222245555543
No 217
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.55 E-value=0.00043 Score=77.89 Aligned_cols=96 Identities=16% Similarity=0.052 Sum_probs=57.4
Q ss_pred eEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEe----------c----chhhhhhcCCCCceEecCCCChHhHHHHH
Q 036584 311 YLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITT----------R----IKDVAERSDDRNYVHELRFLRQDESWQLF 374 (919)
Q Consensus 311 ~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt----------r----~~~v~~~~~~~~~~~~l~~L~~~~~~~lf 374 (919)
-++++|+++.. +.++.+...+...... .+|+.| . ...+..........+.+.+++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 39999999754 5677787777654444 344344 2 11111111122246799999999999999
Q ss_pred HHHhccCCCCchhhHHHHHHHHHHc-CCcchHHHHH
Q 036584 375 CERAFRNSKAEKGLENLGREMVQKC-DGLPLAIVVL 409 (919)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~I~~~~-~G~PLal~~~ 409 (919)
..++...... -..+....|++.+ +|.|..+..+
T Consensus 376 ~~~~~~~~~~--~~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 376 KIRAQTEGIN--ISEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHTCC--BCHHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHhCCC--CCHHHHHHHHHHccCCCHHHHHHH
Confidence 8776321111 1234566777777 7888755443
No 218
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.49 E-value=5.8e-05 Score=78.65 Aligned_cols=48 Identities=19% Similarity=0.159 Sum_probs=36.6
Q ss_pred CCCccccccCHHHHHHHHhc----------CCCCcEEEEEEecCCchHHHHHHHHHcc
Q 036584 202 EENPVGFEDDTDLLLAKLLD----------KEQRRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
-.+++|.++.++.+.+.+.. +....+-+.|+|++|+|||+||+.+++.
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 35689999998888876652 1112234789999999999999999984
No 219
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.41 E-value=0.00021 Score=75.57 Aligned_cols=47 Identities=23% Similarity=0.254 Sum_probs=38.3
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..++|++..+.++.+.+.........|.|+|.+|+|||++|+.+++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHh
Confidence 35889999999998888764333456889999999999999999974
No 220
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.40 E-value=0.00095 Score=79.01 Aligned_cols=176 Identities=13% Similarity=0.089 Sum_probs=99.7
Q ss_pred CCccccccCHHHHHHHHhc----C-------CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHH
Q 036584 203 ENPVGFEDDTDLLLAKLLD----K-------EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIK 271 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~----~-------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 271 (919)
.++.|.++.+++|.+++.- + -...+-|.++|++|+|||+||+.++++ ...+ .+.|+.++
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~---~~~v~~~~----- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGPE----- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCE---EEEEEHHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCe---EEEEEhHH-----
Confidence 4578999999988887642 1 124568999999999999999999983 3333 23443321
Q ss_pred HHHHHHHHHhcccccccccccCCHHHHHHHHHHHhccCceEEEEecccch---------h----HHHHHHhhCCCC--CC
Q 036584 272 DLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHK---------E----DWVSLKSAFPEN--KI 336 (919)
Q Consensus 272 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---------~----~~~~l~~~l~~~--~~ 336 (919)
+.... .......+...+....+..+.+|+||+++.. + ...+++..+... ..
T Consensus 274 -----l~sk~---------~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~ 339 (806)
T 3cf2_A 274 -----IMSKL---------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (806)
T ss_dssp -----HHSSC---------TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGG
T ss_pred -----hhccc---------chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccC
Confidence 11110 1111222333333334567899999999742 0 112333222211 12
Q ss_pred CcEEEEEecchhhh-hhcC---CCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchH
Q 036584 337 GSRVIITTRIKDVA-ERSD---DRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLA 405 (919)
Q Consensus 337 gs~iivTtr~~~v~-~~~~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLa 405 (919)
+..||.||...+.. .... -....++++..+.++-.++|+.+........ + .-..+|++++.|.--|
T Consensus 340 ~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~-d--vdl~~lA~~T~Gfsga 409 (806)
T 3cf2_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD-D--VDLEQVANETHGHVGA 409 (806)
T ss_dssp CEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECT-T--CCHHHHHHHCCSCCHH
T ss_pred CEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCc-c--cCHHHHHHhcCCCCHH
Confidence 34445555544322 1111 1226789999999999999987653322111 1 1145688888887643
No 221
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.38 E-value=0.00021 Score=70.71 Aligned_cols=52 Identities=17% Similarity=0.091 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCCCC--cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeC
Q 036584 212 TDLLLAKLLDKEQR--RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVS 265 (919)
Q Consensus 212 ~~~l~~~L~~~~~~--~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 265 (919)
++.+.+++...... .+.+.|+|++|+|||+||+.+++. .......++|++++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 38 IRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP 91 (202)
T ss_dssp HHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH
T ss_pred HHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH
Confidence 34455555543221 268899999999999999999984 33333446676553
No 222
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.35 E-value=0.0011 Score=79.98 Aligned_cols=156 Identities=17% Similarity=0.138 Sum_probs=88.3
Q ss_pred CCCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCcc----CCCCEEEEE-EeCCCCCHHHHHHH
Q 036584 202 EENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVK----NKFDYCAWV-SVSQDYKIKDLLLR 276 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv-~~~~~~~~~~~~~~ 276 (919)
-+.++||+.+++.+.+.|.... ..-+.|+|++|+||||+|+.+++..... ....+.+|. +.+.-
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l--------- 253 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL--------- 253 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-----------
T ss_pred CCCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH---------
Confidence 3569999999999999997653 4467899999999999999998732110 011222222 21110
Q ss_pred HHHHhcccccccccccCCHHHHHHHHHHHh-ccCceEEEEecccch----------hHHHHHHhhCCCCCCCcEEEEEec
Q 036584 277 IIKSFNIMTALEDLETKTEEDLARSLRKSL-EAYSYLMVIDDIWHK----------EDWVSLKSAFPENKIGSRVIITTR 345 (919)
Q Consensus 277 il~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~----------~~~~~l~~~l~~~~~gs~iivTtr 345 (919)
+... .. ..........+.+.+ ..++.+|++|+++.. .+...+...+... .+..+|.+|.
T Consensus 254 ----~~~~----~~-~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~-~~~~~I~at~ 323 (758)
T 1r6b_X 254 ----LAGT----KY-RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTT 323 (758)
T ss_dssp -----CCC----CC-SSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS-CCCEEEEEEC
T ss_pred ----hccc----cc-cchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC-CCeEEEEEeC
Confidence 0000 00 112233333444444 345789999999754 1222223222222 2456666665
Q ss_pred chhhhhhcC------CCCceEecCCCChHhHHHHHHHHh
Q 036584 346 IKDVAERSD------DRNYVHELRFLRQDESWQLFCERA 378 (919)
Q Consensus 346 ~~~v~~~~~------~~~~~~~l~~L~~~~~~~lf~~~~ 378 (919)
..+...... .....+.++..+.++..+++....
T Consensus 324 ~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred chHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 544321111 111468899999999998887643
No 223
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.34 E-value=0.00016 Score=74.28 Aligned_cols=83 Identities=16% Similarity=0.149 Sum_probs=59.0
Q ss_pred hhccCceEEEEEeccCccccccccccchhhhhhhcccccceEEeecCCCccccChhhhcCC--CCcEEecCCCCCccc-c
Q 036584 606 LFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIGILPSSIVKLQ--RLQTLDFSGDVGCPV-E 682 (919)
Q Consensus 606 ~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~l~~L~--~L~~L~L~~~~~~~~-~ 682 (919)
...+++.|++|+|++ |. +.....+|..+..+++|++|+|++|.|..+ ..+..+. +|++|+|++| .+. .
T Consensus 165 ~~~~l~~L~~L~Ls~-N~-----l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~N--pl~~~ 235 (267)
T 3rw6_A 165 IEENIPELLSLNLSN-NR-----LYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGN--SLCDT 235 (267)
T ss_dssp HHHHCTTCCEEECTT-SC-----CCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTS--TTGGG
T ss_pred HHhhCCCCCEEECCC-CC-----CCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCC--cCccc
Confidence 335788899999999 77 663224556777899999999999999776 3455555 8999999998 443 3
Q ss_pred cCc-------cccccccccccc
Q 036584 683 LPI-------EINMMQELRHLI 697 (919)
Q Consensus 683 lp~-------~i~~L~~L~~L~ 697 (919)
+|. .+..+++|+.|+
T Consensus 236 ~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 236 FRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CSSHHHHHHHHHHHCTTCCEES
T ss_pred cCcchhHHHHHHHHCcccCeEC
Confidence 442 245566666664
No 224
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.30 E-value=0.0007 Score=81.56 Aligned_cols=151 Identities=15% Similarity=0.106 Sum_probs=80.9
Q ss_pred CCCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccC---ccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 036584 202 EENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNND---VKNKFDYCAWVSVSQDYKIKDLLLRII 278 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~il 278 (919)
-+.+|||+++++.+...|.... ..-+.|+|++|+|||++|+.+++... +.......-++.+.- .
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-----------g 245 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-----------G 245 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--------------
T ss_pred CCCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-----------c
Confidence 3579999999999999997743 33578999999999999999987410 000111111121111 0
Q ss_pred HHhcccccccccccCCHHHHHHHHHHHhccCceEEEEecccchhHHHHHHhhCCCCCCCcEEEEEecchhhhhhc-----
Q 036584 279 KSFNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHKEDWVSLKSAFPENKIGSRVIITTRIKDVAERS----- 353 (919)
Q Consensus 279 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~----- 353 (919)
....+ . ....... .+......++.+|++| ...+....+...+. ....++|.||...+.....
T Consensus 246 ~~~~G-----~-~e~~l~~---~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~a 312 (758)
T 3pxi_A 246 TKYRG-----E-FEDRLKK---VMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAA 312 (758)
T ss_dssp -------------CTTHHH---HHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSH
T ss_pred ccccc-----h-HHHHHHH---HHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHH
Confidence 00000 0 0111122 2222334678899999 22222223333333 2235666666544421111
Q ss_pred -CCCCceEecCCCChHhHHHHHHHHh
Q 036584 354 -DDRNYVHELRFLRQDESWQLFCERA 378 (919)
Q Consensus 354 -~~~~~~~~l~~L~~~~~~~lf~~~~ 378 (919)
......+.++..+.++..+++....
T Consensus 313 l~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 313 LERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 0111578999999999999998654
No 225
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.19 E-value=0.0011 Score=69.74 Aligned_cols=24 Identities=25% Similarity=0.544 Sum_probs=21.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
.+.+.++|++|+|||+||+.+++.
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467889999999999999999984
No 226
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.16 E-value=0.0007 Score=81.59 Aligned_cols=149 Identities=12% Similarity=0.143 Sum_probs=82.8
Q ss_pred CCccccccCHHHHHHHHhcCC-------CCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHH
Q 036584 203 ENPVGFEDDTDLLLAKLLDKE-------QRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLL 275 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 275 (919)
..++|.+..++.+...+.... .....+.++|++|+|||++|+.+++. ....-...+.++++.-...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~----- 563 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEK----- 563 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSS-----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhcccc-----
Confidence 468999999988888887421 12337999999999999999999974 2222223455555432110
Q ss_pred HHHHHhcccccccccccCCHHHHHHHHHHHh-ccCceEEEEecccch--hHHHHHHhhCCC-----------CCCCcEEE
Q 036584 276 RIIKSFNIMTALEDLETKTEEDLARSLRKSL-EAYSYLMVIDDIWHK--EDWVSLKSAFPE-----------NKIGSRVI 341 (919)
Q Consensus 276 ~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~--~~~~~l~~~l~~-----------~~~gs~ii 341 (919)
. ... ...+...+ +....+|+||+++.. +....+...+.. .....+||
T Consensus 564 --------------~-~~~----~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI 624 (758)
T 3pxi_A 564 --------------H-STS----GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILI 624 (758)
T ss_dssp --------------C-CCC-------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEE
T ss_pred --------------c-ccc----cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEE
Confidence 0 000 11111222 233459999999754 334444433321 11346788
Q ss_pred EEecchh---------hhhhc-----CCCCceEecCCCChHhHHHHHHHH
Q 036584 342 ITTRIKD---------VAERS-----DDRNYVHELRFLRQDESWQLFCER 377 (919)
Q Consensus 342 vTtr~~~---------v~~~~-----~~~~~~~~l~~L~~~~~~~lf~~~ 377 (919)
+||.... +.... .-....+.+.+++.++..+++...
T Consensus 625 ~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 625 MTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp EEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred EeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 8887311 01111 111157888899888888777554
No 227
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.13 E-value=0.003 Score=65.57 Aligned_cols=151 Identities=12% Similarity=0.086 Sum_probs=80.0
Q ss_pred CCccccccCHHHHHHHHhcC----------C-CCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHH
Q 036584 203 ENPVGFEDDTDLLLAKLLDK----------E-QRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIK 271 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~----------~-~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 271 (919)
.++.|.++.++.+.+.+... + .-.+-+.|+|++|+||||||+.++..... ..+++...+-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~- 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNM- 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSS-
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhh-
Confidence 35667777666666544210 0 11123999999999999999999984221 2444443321110
Q ss_pred HHHHHHHHHhcccccccccccCCHHHHHHHHHHHh-ccCceEEEEecccch-------------hHHHHHHhhCCCC--C
Q 036584 272 DLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSL-EAYSYLMVIDDIWHK-------------EDWVSLKSAFPEN--K 335 (919)
Q Consensus 272 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~-------------~~~~~l~~~l~~~--~ 335 (919)
........+..+.+.. ...+.++++|+++.. .....+...+..+ .
T Consensus 84 -------------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~ 144 (274)
T 2x8a_A 84 -------------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEAR 144 (274)
T ss_dssp -------------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCST
T ss_pred -------------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccccc
Confidence 0000111222333332 345789999998642 1112233333322 1
Q ss_pred CCcEEEEEecchhhhhhc----CCCCceEecCCCChHhHHHHHHHHh
Q 036584 336 IGSRVIITTRIKDVAERS----DDRNYVHELRFLRQDESWQLFCERA 378 (919)
Q Consensus 336 ~gs~iivTtr~~~v~~~~----~~~~~~~~l~~L~~~~~~~lf~~~~ 378 (919)
...-++.+|...++.... +-....+.++..+.++-.++++...
T Consensus 145 ~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 145 QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp TCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred CCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 234455566655433221 1222678899999999899988765
No 228
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.10 E-value=0.003 Score=70.96 Aligned_cols=171 Identities=16% Similarity=0.047 Sum_probs=91.4
Q ss_pred CCCccccccCHHHHHHHHhc---CC-------CCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHH
Q 036584 202 EENPVGFEDDTDLLLAKLLD---KE-------QRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIK 271 (919)
Q Consensus 202 ~~~~vGr~~~~~~l~~~L~~---~~-------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 271 (919)
-.+++|.++.+.++.+.... .. .-.+-|.|+|++|+||||||+.++... .. ..+.++.+.-..
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~--~~---~~i~i~g~~~~~-- 102 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--RV---PFITASGSDFVE-- 102 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT--TC---CEEEEEGGGGTS--
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CC---CEEEEehhHHHH--
Confidence 35688988777666555432 10 112348999999999999999999842 22 233444332100
Q ss_pred HHHHHHHHHhcccccccccccCCHHHHHHHHHHHhc----cCceEEEEecccch------------h----HHHHHHhhC
Q 036584 272 DLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSLE----AYSYLMVIDDIWHK------------E----DWVSLKSAF 331 (919)
Q Consensus 272 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~----~~~~LlVlDdv~~~------------~----~~~~l~~~l 331 (919)
.........+...++ ..+.++++|+++.. + ....+...+
T Consensus 103 ---------------------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~L 161 (499)
T 2dhr_A 103 ---------------------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM 161 (499)
T ss_dssp ---------------------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHG
T ss_pred ---------------------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHh
Confidence 000111222333332 24579999999532 1 123444444
Q ss_pred CCC--CCCcEEEEEecchhhhhh--cC--CCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcc
Q 036584 332 PEN--KIGSRVIITTRIKDVAER--SD--DRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLP 403 (919)
Q Consensus 332 ~~~--~~gs~iivTtr~~~v~~~--~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 403 (919)
... ..+..|+.||...+.... .. -....+.++..+.++-.+++..++......++. ....|+..+.|+.
T Consensus 162 dg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv---~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 162 DGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV---DLALLAKRTPGFV 236 (499)
T ss_dssp GGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSS---TTHHHHTTSCSCC
T ss_pred cccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHH---HHHHHHHhcCCCC
Confidence 322 223445556665544221 11 112578899899998888887665322111111 1344667777765
No 229
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.04 E-value=0.0002 Score=69.71 Aligned_cols=117 Identities=11% Similarity=0.041 Sum_probs=68.5
Q ss_pred cchhhhccCceEEEEEeccCc-cccccccccchhhhhhhcccccceEEeecCCCcc-----ccChhhhcCCCCcEEecCC
Q 036584 602 HLPLLFERFFLLRVFDVEADL-DRESTLMHWSNRLSEKIGDLIHLKYLGLRNSNIG-----ILPSSIVKLQRLQTLDFSG 675 (919)
Q Consensus 602 ~l~~~~~~~~~LrvL~L~~~~-~~~~~~i~~~~~lp~~i~~L~~Lr~L~L~~~~i~-----~LP~~l~~L~~L~~L~L~~ 675 (919)
.+...+...+.|+.|+|++ + ...+..+. .+...+....+|++|+|++|.|+ .+...+...++|++|+|++
T Consensus 27 ~l~~~l~~~~~L~~L~L~~-n~~i~~~g~~---~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~ 102 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNN-IMNIPVPTLK---ACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVES 102 (185)
T ss_dssp HHHHHHTTCTTCCEEECTT-CTTCCHHHHH---HHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHhcCCCCCEEEecC-CCCCCHHHHH---HHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcC
Confidence 3445566777788888887 6 51111112 34555666777888888888773 3455566667788888887
Q ss_pred CCCcccc-----cCccccccccccccccccccccCCCCcCcCccccc--cccc------ccchhhccCCCCCCeEEeeec
Q 036584 676 DVGCPVE-----LPIEINMMQELRHLIGNFKGTLPIENLTNLQTLKY--VQSK------SWNKVNTAKLVNLRDLHIEED 742 (919)
Q Consensus 676 ~~~~~~~-----lp~~i~~L~~L~~L~~~~~~~~~i~~l~~L~~L~~--~~~~------~~~~~~l~~l~~L~~L~i~~~ 742 (919)
| .+.. +...+ ...++|++|++ ..+. ......+...++|+.|+++++
T Consensus 103 N--~i~~~g~~~l~~~L-------------------~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 103 N--FISGSGILALVEAL-------------------QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp S--CCCHHHHHHHHHGG-------------------GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred C--cCCHHHHHHHHHHH-------------------HhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 7 4432 11122 22334555555 3333 112334556678888888877
Q ss_pred C
Q 036584 743 E 743 (919)
Q Consensus 743 ~ 743 (919)
.
T Consensus 162 ~ 162 (185)
T 1io0_A 162 Q 162 (185)
T ss_dssp S
T ss_pred C
Confidence 5
No 230
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.03 E-value=0.00043 Score=65.77 Aligned_cols=84 Identities=15% Similarity=0.093 Sum_probs=44.8
Q ss_pred CceeEEEceecC--CCCcchhccCCCcceEEEEccC-CCCCCchhhhcC----CCCCeEEEeecccc-CeeEEEcCCCCc
Q 036584 787 CLVDLRLSGRMK--KLPEDMHVFLPNLECLSLSVPY-PKEDPMPALEML----PNLIILDLHFRCHY-VKKLGCRAEGFP 858 (919)
Q Consensus 787 ~L~~L~L~~~~~--~~p~~~~~l~~~L~~L~L~~~~-l~~~~~~~l~~l----p~L~~L~L~~~~~~-~~~~~~~~~~f~ 858 (919)
.|++|+++++.- .--..+.. +++|++|+|++|. ++...+..++.+ ++|++|+|++|... ...+. ....++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~-~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEG-LQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALHHFR 139 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTT-CSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGGCT
T ss_pred eEeEEeCcCCCccHHHHHHhcC-CCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHhcCC
Confidence 566666666531 00111223 3677777777773 555555555554 36777777754322 22221 123467
Q ss_pred ccceeEEe-cCCccc
Q 036584 859 LLEILQLD-ADGLVE 872 (919)
Q Consensus 859 ~L~~L~l~-~~~l~~ 872 (919)
+|++|+++ |++++.
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 77777777 666664
No 231
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.01 E-value=0.0023 Score=65.75 Aligned_cols=173 Identities=17% Similarity=0.107 Sum_probs=85.8
Q ss_pred CCccccccCHHHHHHHHhc---C------C-CCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHH
Q 036584 203 ENPVGFEDDTDLLLAKLLD---K------E-QRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKD 272 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~---~------~-~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 272 (919)
.+++|.++.+.++.+.... . + .-.+-+.|+|++|+||||||+.++... .. ..+.+... .
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~--~~---~~i~~~~~------~ 84 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--RV---PFITASGS------D 84 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT--TC---CEEEEEHH------H
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh--CC---CEEEeeHH------H
Confidence 4577776665555443321 0 0 011238999999999999999999842 21 22333321 1
Q ss_pred HHHHHHHHhcccccccccccCCHHHHHHHHHHHh-ccCceEEEEecccch------------hH----HHHHHhhCCCCC
Q 036584 273 LLLRIIKSFNIMTALEDLETKTEEDLARSLRKSL-EAYSYLMVIDDIWHK------------ED----WVSLKSAFPENK 335 (919)
Q Consensus 273 ~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~------------~~----~~~l~~~l~~~~ 335 (919)
+..... . ........+.+.. ...+.++++|+++.. .. ...+...+..+.
T Consensus 85 ----~~~~~~---------~-~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~ 150 (254)
T 1ixz_A 85 ----FVEMFV---------G-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 150 (254)
T ss_dssp ----HHHSCT---------T-HHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCC
T ss_pred ----HHHHHh---------h-HHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCC
Confidence 111000 0 0111222333333 245689999999532 11 123333333222
Q ss_pred --CCcEEEEEecchhhhhhc--C--CCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcc
Q 036584 336 --IGSRVIITTRIKDVAERS--D--DRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLP 403 (919)
Q Consensus 336 --~gs~iivTtr~~~v~~~~--~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 403 (919)
....++.||...+..... . -....+.++..+.++-.+++...+.......+. ....|++.+.|.-
T Consensus 151 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~---~~~~la~~~~G~~ 221 (254)
T 1ixz_A 151 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV---DLALLAKRTPGFV 221 (254)
T ss_dssp TTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred CCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCccc---CHHHHHHHcCCCC
Confidence 223344455554432211 1 122578888899888888887665322111111 1234666776654
No 232
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.96 E-value=0.0022 Score=68.80 Aligned_cols=151 Identities=17% Similarity=0.148 Sum_probs=83.7
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFN 282 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 282 (919)
..++|+++.++.+...+..+. -+.++|++|+|||+||+.+.+. ....| ..+.........++... ..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~----~vll~G~pGtGKT~la~~la~~--~~~~~---~~i~~~~~~~~~~l~g~----~~ 93 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG----HILLEGVPGLAKTLSVNTLAKT--MDLDF---HRIQFTPDLLPSDLIGT----MI 93 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC----CEEEESCCCHHHHHHHHHHHHH--TTCCE---EEEECCTTCCHHHHHEE----EE
T ss_pred cceeCcHHHHHHHHHHHHcCC----eEEEECCCCCcHHHHHHHHHHH--hCCCe---EEEecCCCCChhhcCCc----ee
Confidence 468999998888888887643 6889999999999999999983 33332 33444433333322111 00
Q ss_pred ccccccccccCCHHHHHHHHHHHhccC---ceEEEEecccch--hHHHHHHhhCCC-----------CCCCcEEEEEecc
Q 036584 283 IMTALEDLETKTEEDLARSLRKSLEAY---SYLMVIDDIWHK--EDWVSLKSAFPE-----------NKIGSRVIITTRI 346 (919)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~LlVlDdv~~~--~~~~~l~~~l~~-----------~~~gs~iivTtr~ 346 (919)
........ ..... ..++++|+++.. .....+...+.. ......||.|+..
T Consensus 94 ~~~~~~~~--------------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np 159 (331)
T 2r44_A 94 YNQHKGNF--------------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNP 159 (331)
T ss_dssp EETTTTEE--------------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECT
T ss_pred ecCCCCce--------------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCC
Confidence 00000000 00111 258999999754 233333332221 1224455555552
Q ss_pred hh------hhhhc-CCCCceEecCCCChHhHHHHHHHHhcc
Q 036584 347 KD------VAERS-DDRNYVHELRFLRQDESWQLFCERAFR 380 (919)
Q Consensus 347 ~~------v~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~ 380 (919)
.+ +.... .-....+.+++.+.++-.+++.+.+..
T Consensus 160 ~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 160 VEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp TCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred CcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 22 11111 111135889999999999999887643
No 233
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.93 E-value=0.003 Score=75.97 Aligned_cols=173 Identities=12% Similarity=0.098 Sum_probs=94.1
Q ss_pred CCccccccCHHHHHHHHhc-----------CCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHH
Q 036584 203 ENPVGFEDDTDLLLAKLLD-----------KEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIK 271 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 271 (919)
.+++|.++.++++.+++.. .-.....|.|+|++|+||||||+.++.. ....| +.++.+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~~----- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE----- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHHH-----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEchH-----
Confidence 5689999999999988864 1123457999999999999999999983 33222 3333211
Q ss_pred HHHHHHHHHhcccccccccccCCHHHHHHHHHHHhccCceEEEEecccch-------------hHHHHHHhhCCC--CCC
Q 036584 272 DLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWHK-------------EDWVSLKSAFPE--NKI 336 (919)
Q Consensus 272 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~l~~--~~~ 336 (919)
+ .... .......+...+.......+.++++|+++.. .....+...+.. ...
T Consensus 274 -----l----~~~~-----~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~ 339 (806)
T 1ypw_A 274 -----I----MSKL-----AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (806)
T ss_dssp -----H----SSSS-----TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTS
T ss_pred -----h----hhhh-----hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccc
Confidence 0 0000 0001112222233333556789999999521 011223222221 122
Q ss_pred CcEEEEEecchhhh-hhcC---CCCceEecCCCChHhHHHHHHHHhccCCCC-chhhHHHHHHHHHHcCCcc
Q 036584 337 GSRVIITTRIKDVA-ERSD---DRNYVHELRFLRQDESWQLFCERAFRNSKA-EKGLENLGREMVQKCDGLP 403 (919)
Q Consensus 337 gs~iivTtr~~~v~-~~~~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~~~~~~I~~~~~G~P 403 (919)
+..+|.||...... .... .....+.+...+.++-.+++...+-..... ... ..+++..+.|..
T Consensus 340 ~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~----l~~la~~t~g~~ 407 (806)
T 1ypw_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp CCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCC----THHHHHSCSSCC
T ss_pred cEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccch----hHHHHHhhcCcc
Confidence 44556566543221 1111 111467788889999999887665332211 111 234556666654
No 234
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.91 E-value=0.00031 Score=68.37 Aligned_cols=89 Identities=13% Similarity=0.025 Sum_probs=55.5
Q ss_pred CCcccEEEEecc-cccccccccccchhhhccCceEEEEEeccCccccccccccc--hhhhhhhcccccceEEeecCCCcc
Q 036584 580 NSLARSLLLFNQ-WWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWS--NRLSEKIGDLIHLKYLGLRNSNIG 656 (919)
Q Consensus 580 ~~~lrsL~~~~~-~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~--~~lp~~i~~L~~Lr~L~L~~~~i~ 656 (919)
.+.+++|.+.++ ..++. ....+...+...+.|++|+|++ |. +.+. ..+...+...+.|++|+|++|.|+
T Consensus 35 ~~~L~~L~L~~n~~i~~~--g~~~l~~~L~~~~~L~~L~Ls~-n~-----i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVP--TLKACAEALKTNTYVKKFSIVG-TR-----SNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp CTTCCEEECTTCTTCCHH--HHHHHHHHHTTCCSCCEEECTT-SC-----CCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred CCCCCEEEecCCCCCCHH--HHHHHHHHHHhCCCcCEEECcC-CC-----CChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 567777777765 43211 1123344556667788888888 66 4421 134455556677888888888774
Q ss_pred c-----cChhhhcCCCCcEEec--CCC
Q 036584 657 I-----LPSSIVKLQRLQTLDF--SGD 676 (919)
Q Consensus 657 ~-----LP~~l~~L~~L~~L~L--~~~ 676 (919)
. +...+...++|++|+| ++|
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N 133 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQ 133 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSS
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCC
Confidence 3 5566777777888888 666
No 235
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.90 E-value=0.011 Score=65.11 Aligned_cols=282 Identities=10% Similarity=0.097 Sum_probs=134.5
Q ss_pred cccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhh-hhhcccccceEEeecCCCccccCh
Q 036584 582 LARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLS-EKIGDLIHLKYLGLRNSNIGILPS 660 (919)
Q Consensus 582 ~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp-~~i~~L~~Lr~L~L~~~~i~~LP~ 660 (919)
.|+++.+... ...+-...|..|.+|+.+.+.. +. ...++ .++ ..+..+..|+.+.+..+ ++.++.
T Consensus 65 ~L~sI~iP~s-------vt~Ig~~AF~~C~~L~~i~~~~-n~--p~~l~---~Ig~~aF~~c~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 65 VLTSVQIPDT-------VTEIGSNAFYNCTSLKRVTIQD-NK--PSCVK---KIGRQAFMFCSELTDIPILDS-VTEIDS 130 (394)
T ss_dssp CCCEEEECTT-------CCEECTTTTTTCTTCCEEEEGG-GC--CCCCC---EECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred cCEEEEECCC-------eeEEhHHHhhCCccCceEeecC-CC--CCeee---EechhhchhcccceeeccCCc-cceehh
Confidence 4777777544 2234456677888888887765 21 00033 332 34566777777766543 445544
Q ss_pred -hhhcCCCCcEEecCCCCCcccccCc-ccccccccccccccc----ccccCCCCcCcCccccccccc-ccchhhccCCCC
Q 036584 661 -SIVKLQRLQTLDFSGDVGCPVELPI-EINMMQELRHLIGNF----KGTLPIENLTNLQTLKYVQSK-SWNKVNTAKLVN 733 (919)
Q Consensus 661 -~l~~L~~L~~L~L~~~~~~~~~lp~-~i~~L~~L~~L~~~~----~~~~~i~~l~~L~~L~~~~~~-~~~~~~l~~l~~ 733 (919)
.+..+.+|+.+.+..+ +..++. .+..+.+|+.+.... .....+. ..+|+.+.+...- ......+..+.+
T Consensus 131 ~aF~~c~~L~~i~lp~~---~~~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF~-~~~l~~i~ip~~~~~i~~~af~~c~~ 206 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEG---VTSVADGMFSYCYSLHTVTLPDSVTAIEERAFT-GTALTQIHIPAKVTRIGTNAFSECFA 206 (394)
T ss_dssp TTTTTCTTCCEEECCTT---CCEECTTTTTTCTTCCEEECCTTCCEECTTTTT-TCCCSEEEECTTCCEECTTTTTTCTT
T ss_pred hhhhhhcccccccccce---eeeecccceecccccccccccceeeEecccccc-ccceeEEEECCcccccccchhhhccc
Confidence 4677778888887654 344444 344455555552110 0011122 1334444332211 112233344445
Q ss_pred CCeEEeeecCccccccccch--------hhHHhhcCCCcEEEEeecCCCCcc--CcCCCCCCCCceeEEEceecCCCCcc
Q 036584 734 LRDLHIEEDEDEWEGETVFS--------FESIAKLKNLRFLSVKLLDANSFA--SLQPLSHCQCLVDLRLSGRMKKLPED 803 (919)
Q Consensus 734 L~~L~i~~~~~~~~~~~~~~--------~~~l~~l~~L~~L~l~~~~~~~~~--~~~~l~~~~~L~~L~L~~~~~~~p~~ 803 (919)
+................... .........+..+.+. +.+. +-..+..+..|+.+.+......+..+
T Consensus 207 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip----~~v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~ 282 (394)
T 4gt6_A 207 LSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP----NGVARIETHAFDSCAYLASVKMPDSVVSIGTG 282 (394)
T ss_dssp CCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC----TTEEEECTTTTTTCSSCCEEECCTTCCEECTT
T ss_pred cceecccccccccccceeecccccccccccccccccccceEEcC----CcceEcccceeeecccccEEecccccceecCc
Confidence 54444332211000000000 0000011122222220 1111 11225567778888776544333333
Q ss_pred hhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccccCeeE-EEcCCCCcccceeEEecCCcccEEEc-cCCcc
Q 036584 804 MHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHYVKKL-GCRAEGFPLLEILQLDADGLVEWQVE-EGAMP 881 (919)
Q Consensus 804 ~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~-~~~~~~f~~L~~L~l~~~~l~~~~~~-~~~~p 881 (919)
.+.-+++|+.+.+... +......++..+++|+.+.|. +.. ..+ ...+.++.+|+.+.|. +.++.+... ...++
T Consensus 283 aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp-~~v--~~I~~~aF~~C~~L~~i~ip-~sv~~I~~~aF~~C~ 357 (394)
T 4gt6_A 283 AFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIP-EGI--TQILDDAFAGCEQLERIAIP-SSVTKIPESAFSNCT 357 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTC--CEECTTTTTTCTTCCEEEEC-TTCCBCCGGGGTTCT
T ss_pred ccccccccccccCCCc-ccccCceeecCCCCcCEEEeC-Ccc--cEehHhHhhCCCCCCEEEEC-cccCEEhHhHhhCCC
Confidence 3333477888887543 333444567778888888886 221 122 1234556778877775 335544321 23467
Q ss_pred cccceEEcc
Q 036584 882 VLRGLKIAA 890 (919)
Q Consensus 882 ~L~~L~l~~ 890 (919)
+|+.+.+.+
T Consensus 358 ~L~~i~~~~ 366 (394)
T 4gt6_A 358 ALNNIEYSG 366 (394)
T ss_dssp TCCEEEESS
T ss_pred CCCEEEECC
Confidence 777777765
No 236
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.85 E-value=0.027 Score=61.49 Aligned_cols=78 Identities=9% Similarity=0.127 Sum_probs=43.1
Q ss_pred CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhh-hhhcccccceEEeecCCCcccc
Q 036584 580 NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLS-EKIGDLIHLKYLGLRNSNIGIL 658 (919)
Q Consensus 580 ~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp-~~i~~L~~Lr~L~L~~~~i~~L 658 (919)
..+++++.+... ...+-...|..|.+|+.++|.. + +. .++ ..+.++ .|..+.+.. .++.+
T Consensus 45 ~~~i~~v~ip~~-------vt~Ig~~aF~~C~~L~~I~lp~-~------v~---~Ig~~aF~~c-~l~~i~~~~-~l~~I 105 (379)
T 4h09_A 45 RDRISEVRVNSG-------ITSIGEANFNSCYNMTKVTVAS-T------VT---SIGDGAFADT-KLQSYTGME-RVKKF 105 (379)
T ss_dssp GGGCSEEEECTT-------EEEECTTTTTTCTTCCEEEECT-T------CC---EECTTTTTTC-CCCEEEECT-TCCEE
T ss_pred ccCCEEEEeCCC-------ccChHHHHhhCCCCCCEEEeCC-c------ce---EechhhhcCC-CCceEECCc-eeeEe
Confidence 456777777544 2234455677788888888765 2 33 333 234444 466665543 35555
Q ss_pred ChhhhcCCCCcEEecCCC
Q 036584 659 PSSIVKLQRLQTLDFSGD 676 (919)
Q Consensus 659 P~~l~~L~~L~~L~L~~~ 676 (919)
+...-...+|+.+.+..+
T Consensus 106 ~~~aF~~~~L~~i~lp~~ 123 (379)
T 4h09_A 106 GDYVFQGTDLDDFEFPGA 123 (379)
T ss_dssp CTTTTTTCCCSEEECCTT
T ss_pred ccceeccCCcccccCCCc
Confidence 543222346777777654
No 237
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.84 E-value=0.0012 Score=61.35 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=27.5
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeC
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVS 265 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 265 (919)
...+.|+|+.|+|||||++.++...... .+ .++++...
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~ 73 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAA 73 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHH
Confidence 4689999999999999999999843221 11 25666554
No 238
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.83 E-value=0.0067 Score=63.15 Aligned_cols=173 Identities=17% Similarity=0.088 Sum_probs=87.2
Q ss_pred CCccccccCHHHHHHHHhcC---------C-CCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHH
Q 036584 203 ENPVGFEDDTDLLLAKLLDK---------E-QRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKD 272 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~---------~-~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 272 (919)
++++|.++.++++.+....- + .-.+-+.|+|++|+||||||+.++... .. ..+.+... .
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~--~~---~~i~~~~~------~ 108 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--RV---PFITASGS------D 108 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT--TC---CEEEEEHH------H
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc--CC---CEEEecHH------H
Confidence 46778776666655443211 0 011238999999999999999999843 21 23333321 1
Q ss_pred HHHHHHHHhcccccccccccCCHHHHHHHHHHHh-ccCceEEEEecccch------------hH----HHHHHhhCCCCC
Q 036584 273 LLLRIIKSFNIMTALEDLETKTEEDLARSLRKSL-EAYSYLMVIDDIWHK------------ED----WVSLKSAFPENK 335 (919)
Q Consensus 273 ~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~------------~~----~~~l~~~l~~~~ 335 (919)
+...... ........+.+.. ...+.++|+|+++.. .. ...+...+..+.
T Consensus 109 ----~~~~~~~----------~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~ 174 (278)
T 1iy2_A 109 ----FVEMFVG----------VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 174 (278)
T ss_dssp ----HHHSTTT----------HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCC
T ss_pred ----HHHHHhh----------HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC
Confidence 1110000 0011122233332 245689999999531 11 123333333322
Q ss_pred C--CcEEEEEecchhhhhh--cC--CCCceEecCCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcc
Q 036584 336 I--GSRVIITTRIKDVAER--SD--DRNYVHELRFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLP 403 (919)
Q Consensus 336 ~--gs~iivTtr~~~v~~~--~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 403 (919)
. ...++.||...++... .. -....+.++..+.++-.+++..++.......+. ....|++.+.|..
T Consensus 175 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~---~~~~la~~~~G~~ 245 (278)
T 1iy2_A 175 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV---DLALLAKRTPGFV 245 (278)
T ss_dssp TTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred CCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCccc---CHHHHHHHcCCCC
Confidence 2 2334445554433221 11 122578899999988888887665322111111 1334667777765
No 239
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.78 E-value=0.0042 Score=67.92 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.3
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
...+.|+|++|+|||++|+.+++.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999999983
No 240
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.76 E-value=0.0046 Score=61.77 Aligned_cols=89 Identities=22% Similarity=0.262 Sum_probs=52.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccc-------cccc-cccCCHH
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMT-------ALED-LETKTEE 296 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~-------~~~~-~~~~~~~ 296 (919)
...++.|+|++|+||||||..++. . .-..++|++....++...+. .+....+... .... .......
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~--~---~~~~v~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL--L---SGKKVAYVDTEGGFSPERLV-QMAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--H---HCSEEEEEESSCCCCHHHHH-HHHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--H---cCCcEEEEECCCCCCHHHHH-HHHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 356999999999999999999986 1 22468888887755654443 3333322100 0000 0111123
Q ss_pred HHHHHHHHHhccCceEEEEeccc
Q 036584 297 DLARSLRKSLEAYSYLMVIDDIW 319 (919)
Q Consensus 297 ~~~~~l~~~l~~~~~LlVlDdv~ 319 (919)
+....++..+..++-+||+|.+.
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcH
Confidence 34444444444457799999874
No 241
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.74 E-value=0.0099 Score=65.44 Aligned_cols=259 Identities=11% Similarity=0.052 Sum_probs=142.5
Q ss_pred CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhh-hhhcccccceEEeecCCCcccc
Q 036584 580 NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLS-EKIGDLIHLKYLGLRNSNIGIL 658 (919)
Q Consensus 580 ~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp-~~i~~L~~Lr~L~L~~~~i~~L 658 (919)
+.+|+++.+..+. + ......-...|..+..|+.+.+.. + +. .++ ..+..+.+|+.+.+..+ +..+
T Consensus 86 C~~L~~i~~~~n~--p-~~l~~Ig~~aF~~c~~L~~i~~~~-~------~~---~I~~~aF~~c~~L~~i~lp~~-~~~I 151 (394)
T 4gt6_A 86 CTSLKRVTIQDNK--P-SCVKKIGRQAFMFCSELTDIPILD-S------VT---EIDSEAFHHCEELDTVTIPEG-VTSV 151 (394)
T ss_dssp CTTCCEEEEGGGC--C-CCCCEECTTTTTTCTTCCBCGGGT-T------CS---EECTTTTTTCTTCCEEECCTT-CCEE
T ss_pred CccCceEeecCCC--C-CeeeEechhhchhcccceeeccCC-c------cc---eehhhhhhhhcccccccccce-eeee
Confidence 7899999887641 0 112234455678888888776655 2 23 333 34677889999998753 4444
Q ss_pred Ch-hhhcCCCCcEEecCCCCCcccccCccccccccccccccc----cccccCCCCcCcCcccccccccccc---------
Q 036584 659 PS-SIVKLQRLQTLDFSGDVGCPVELPIEINMMQELRHLIGN----FKGTLPIENLTNLQTLKYVQSKSWN--------- 724 (919)
Q Consensus 659 P~-~l~~L~~L~~L~L~~~~~~~~~lp~~i~~L~~L~~L~~~----~~~~~~i~~l~~L~~L~~~~~~~~~--------- 724 (919)
+. .+..+.+|+.+.+..+ +..+........+|+.+... ......+..+.++............
T Consensus 152 ~~~~F~~c~~L~~i~~~~~---~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~ 228 (394)
T 4gt6_A 152 ADGMFSYCYSLHTVTLPDS---VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKS 228 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT---CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEEC
T ss_pred cccceecccccccccccce---eeEeccccccccceeEEEECCcccccccchhhhccccceecccccccccccceeeccc
Confidence 44 5778889999988765 55555544444555555211 1111224444454443322111000
Q ss_pred ------hhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCccCcCCCCCCCCceeEEEceecC
Q 036584 725 ------KVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSFASLQPLSHCQCLVDLRLSGRMK 798 (919)
Q Consensus 725 ------~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 798 (919)
.........+..+.+... .... ...++..+.+|+++.+... ...+ +-..+..++.|+.+.+.....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~ip~~-----v~~i-~~~aF~~c~~L~~i~lp~~-~~~I-~~~aF~~c~~L~~i~l~~~i~ 300 (394)
T 4gt6_A 229 ANGDYALIRYPSQREDPAFKIPNG-----VARI-ETHAFDSCAYLASVKMPDS-VVSI-GTGAFMNCPALQDIEFSSRIT 300 (394)
T ss_dssp TTSCEEEEECCTTCCCSEEECCTT-----EEEE-CTTTTTTCSSCCEEECCTT-CCEE-CTTTTTTCTTCCEEECCTTCC
T ss_pred ccccccccccccccccceEEcCCc-----ceEc-ccceeeecccccEEecccc-ccee-cCcccccccccccccCCCccc
Confidence 000011112222222111 1111 1156677788888887321 1111 223366778888888876555
Q ss_pred CCCcchhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccccCeeE-EEcCCCCcccceeEEec
Q 036584 799 KLPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHYVKKL-GCRAEGFPLLEILQLDA 867 (919)
Q Consensus 799 ~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~-~~~~~~f~~L~~L~l~~ 867 (919)
.++...+.-+.+|+.+.|..+ ++.....++.++.+|+.+.|. ++.. .+ ...+.++++|+.+.+..
T Consensus 301 ~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip-~sv~--~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 301 ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIP-SSVT--KIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEC-TTCC--BCCGGGGTTCTTCCEEEESS
T ss_pred ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEEC-cccC--EEhHhHhhCCCCCCEEEECC
Confidence 566555544688888888765 333344577888888888886 3321 11 12345677788877763
No 242
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.68 E-value=0.0014 Score=68.23 Aligned_cols=69 Identities=16% Similarity=0.188 Sum_probs=46.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEe--CCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSV--SQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLR 303 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 303 (919)
.+++.|+|++|+||||||.+++.. . -..++|++. ++..+ . ...+.+.....+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~--~---G~~VlyIs~~~eE~v~-------------~-------~~~~le~~l~~i~ 177 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA--L---GGKDKYATVRFGEPLS-------------G-------YNTDFNVFVDDIA 177 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH--H---HTTSCCEEEEBSCSST-------------T-------CBCCHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh--C---CCCEEEEEecchhhhh-------------h-------hhcCHHHHHHHHH
Confidence 457889999999999999999874 1 112456766 32211 0 0134566667777
Q ss_pred HHhccCceEEEEecccc
Q 036584 304 KSLEAYSYLMVIDDIWH 320 (919)
Q Consensus 304 ~~l~~~~~LlVlDdv~~ 320 (919)
+.+...+ +||+|++..
T Consensus 178 ~~l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 178 RAMLQHR-VIVIDSLKN 193 (331)
T ss_dssp HHHHHCS-EEEEECCTT
T ss_pred HHHhhCC-EEEEecccc
Confidence 7776666 999999853
No 243
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.59 E-value=0.0039 Score=71.47 Aligned_cols=46 Identities=26% Similarity=0.412 Sum_probs=33.1
Q ss_pred CccccccCHHHHHHHHhc----CCCCcEEEEEEecCCchHHHHHHHHHcc
Q 036584 204 NPVGFEDDTDLLLAKLLD----KEQRRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 204 ~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
+++|.++..+.+.+.+.- .......+.|+|++|+||||||+.++..
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 467776666666544332 1224568999999999999999999973
No 244
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.56 E-value=0.011 Score=71.33 Aligned_cols=47 Identities=17% Similarity=0.144 Sum_probs=36.8
Q ss_pred CCccccccCHHHHHHHHhcC-------CCCcEEEEEEecCCchHHHHHHHHHcc
Q 036584 203 ENPVGFEDDTDLLLAKLLDK-------EQRRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..++|.++.++.+...+... ......+.++|++|+|||++|+.+++.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~ 511 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 35789988888887777532 122347999999999999999999984
No 245
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.56 E-value=0.006 Score=65.24 Aligned_cols=100 Identities=15% Similarity=0.103 Sum_probs=62.4
Q ss_pred HHHHHHHh-cCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccccccc-cc
Q 036584 213 DLLLAKLL-DKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALE-DL 290 (919)
Q Consensus 213 ~~l~~~L~-~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~-~~ 290 (919)
..+...|- .+=....++.|+|++|+||||||..++..... .=..++|++....++.. .++.++...... -.
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~--~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~ 119 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK--MGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLIS 119 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEE
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEecccccchH-----HHHHcCCchhhhhhh
Confidence 45555554 33234579999999999999999999874221 11347899888777654 344444321100 11
Q ss_pred ccCCHHHHHHHHHHHhc-cCceEEEEeccc
Q 036584 291 ETKTEEDLARSLRKSLE-AYSYLMVIDDIW 319 (919)
Q Consensus 291 ~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~ 319 (919)
...+.++....+...++ .+.-++|+|.+-
T Consensus 120 ~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 120 QPDHGEQALEIVDELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp CCSSHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred hccCHHHHHHHHHHHhhhcCCCeEEehHhh
Confidence 23455666666666554 556799999874
No 246
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.39 E-value=0.0091 Score=60.61 Aligned_cols=105 Identities=11% Similarity=0.136 Sum_probs=57.9
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccC----CCCEEEEEEeCCCCCHHHHHHHHHHHhcccc----
Q 036584 214 LLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKN----KFDYCAWVSVSQDYKIKDLLLRIIKSFNIMT---- 285 (919)
Q Consensus 214 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~---- 285 (919)
.+..+|..+=....++.|+|++|+|||||+..++....... .-..++|++....+....+ ..++..++...
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~ 90 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVL 90 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHH
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHh
Confidence 34444433322346999999999999999999987322211 2357899988776554433 33444443211
Q ss_pred -cccccccCCHHH---HHHHHHHHhc-cCceEEEEeccc
Q 036584 286 -ALEDLETKTEED---LARSLRKSLE-AYSYLMVIDDIW 319 (919)
Q Consensus 286 -~~~~~~~~~~~~---~~~~l~~~l~-~~~~LlVlDdv~ 319 (919)
...-....+..+ ....+.+.+. .+.-+||+|++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 91 DNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred hCeEEEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 000001122222 2333444443 466788888874
No 247
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.36 E-value=0.0028 Score=64.91 Aligned_cols=81 Identities=14% Similarity=0.130 Sum_probs=58.7
Q ss_pred CCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhhhhhcccc--cceEEeecCCCc-c
Q 036584 580 NSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLSEKIGDLI--HLKYLGLRNSNI-G 656 (919)
Q Consensus 580 ~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp~~i~~L~--~Lr~L~L~~~~i-~ 656 (919)
+++|++|.++++.. .....++..+..+++|++|+|++ |. +. .+ ..+..+. +|++|+|++|.+ .
T Consensus 169 l~~L~~L~Ls~N~l----~~l~~l~~~~~~l~~L~~L~Ls~-N~-----i~---~~-~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 169 IPELLSLNLSNNRL----YRLDDMSSIVQKAPNLKILNLSG-NE-----LK---SE-RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp CTTCCEEECTTSCC----CCCGGGTTHHHHSTTCCEEECTT-SC-----CC---SG-GGGGGGTTSCCSEEECTTSTTGG
T ss_pred CCCCCEEECCCCCC----CCCccchhHHhhCCCCCEEECCC-Cc-----cC---Cc-hhhhhcccCCcceEEccCCcCcc
Confidence 56677888877731 11124456778999999999999 88 76 34 3455555 999999999999 4
Q ss_pred ccCh-------hhhcCCCCcEEecC
Q 036584 657 ILPS-------SIVKLQRLQTLDFS 674 (919)
Q Consensus 657 ~LP~-------~l~~L~~L~~L~L~ 674 (919)
.+|. .+..+++|+.||-.
T Consensus 235 ~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 235 TFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp GCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred ccCcchhHHHHHHHHCcccCeECCc
Confidence 4552 37889999999743
No 248
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.32 E-value=0.016 Score=60.11 Aligned_cols=87 Identities=9% Similarity=0.095 Sum_probs=54.4
Q ss_pred EEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccccccc-ccccCCHHHH-HHHHHHH
Q 036584 228 VISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALE-DLETKTEEDL-ARSLRKS 305 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~-~~~~~~~~~~-~~~l~~~ 305 (919)
++-|+|++|+||||||.+++........=..++||+..+.++.. .++.++.....- -....+.++. ...+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 78999999999999999887642211112468999998888763 255555432110 1123344555 3333222
Q ss_pred --h-ccCceEEEEeccc
Q 036584 306 --L-EAYSYLMVIDDIW 319 (919)
Q Consensus 306 --l-~~~~~LlVlDdv~ 319 (919)
+ .++.-+||+|-+-
T Consensus 105 ~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HTCCTTCCEEEEEECST
T ss_pred HHhhccCceEEEEeccc
Confidence 2 4567899999984
No 249
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.30 E-value=0.058 Score=58.77 Aligned_cols=273 Identities=8% Similarity=-0.003 Sum_probs=130.6
Q ss_pred CCeeEEEEecCCCCccccc--cCCCcccEEEEecccccccccccccchhhhccCceEEEEEeccCccccccccccchhhh
Q 036584 559 SSCRRQAIYSHSPSYFWLH--HGNSLARSLLLFNQWWDETLGVKRHLPLLFERFFLLRVFDVEADLDRESTLMHWSNRLS 636 (919)
Q Consensus 559 ~~~r~l~l~~~~~~~~~~~--~~~~~lrsL~~~~~~~~~~~~~~~~l~~~~~~~~~LrvL~L~~~~~~~~~~i~~~~~lp 636 (919)
.+++.+.+. ......... ..+.+|+++.+... ...+-...|..++ |..+.+.. + +. .++
T Consensus 46 ~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~-------v~~Ig~~aF~~c~-l~~i~~~~-~------l~---~I~ 106 (379)
T 4h09_A 46 DRISEVRVN-SGITSIGEANFNSCYNMTKVTVAST-------VTSIGDGAFADTK-LQSYTGME-R------VK---KFG 106 (379)
T ss_dssp GGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT-------CCEECTTTTTTCC-CCEEEECT-T------CC---EEC
T ss_pred cCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc-------ceEechhhhcCCC-CceEECCc-e------ee---Eec
Confidence 356666665 333222211 12788999988654 2234455677774 44444433 1 33 444
Q ss_pred hhhcccccceEEeecCCCccccChh-hhcCCCCcEEecCCCCCcccccCc-ccccccccccccccc--------------
Q 036584 637 EKIGDLIHLKYLGLRNSNIGILPSS-IVKLQRLQTLDFSGDVGCPVELPI-EINMMQELRHLIGNF-------------- 700 (919)
Q Consensus 637 ~~i~~L~~Lr~L~L~~~~i~~LP~~-l~~L~~L~~L~L~~~~~~~~~lp~-~i~~L~~L~~L~~~~-------------- 700 (919)
.......+|+.+.+..+ +..+... +.+ .+|..+.+..+ +..+.. .+..+.+|.......
T Consensus 107 ~~aF~~~~L~~i~lp~~-~~~i~~~~F~~-~~l~~~~~~~~---v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~ 181 (379)
T 4h09_A 107 DYVFQGTDLDDFEFPGA-TTEIGNYIFYN-SSVKRIVIPKS---VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYN 181 (379)
T ss_dssp TTTTTTCCCSEEECCTT-CCEECTTTTTT-CCCCEEEECTT---CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEE
T ss_pred cceeccCCcccccCCCc-ccccccccccc-ceeeeeeccce---eeccccchhcccccccccccccccceeecccceecc
Confidence 44333347888888654 3333332 332 34555555443 222322 223334444331100
Q ss_pred ---ccccCCCCcCcCccccccccc-ccchhhccCCCCCCeEEeeecCccccccccchhhHHhhcCCCcEEEEeecCCCCc
Q 036584 701 ---KGTLPIENLTNLQTLKYVQSK-SWNKVNTAKLVNLRDLHIEEDEDEWEGETVFSFESIAKLKNLRFLSVKLLDANSF 776 (919)
Q Consensus 701 ---~~~~~i~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 776 (919)
.....+.....+..+...... ...........+|+.+.+...- .... . ..+..+.+|+.+.+.. ....+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~----~~i~-~-~~f~~~~~L~~i~lp~-~v~~I 254 (379)
T 4h09_A 182 KNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSGV----TTLG-D-GAFYGMKALDEIAIPK-NVTSI 254 (379)
T ss_dssp TTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTTC----CEEC-T-TTTTTCSSCCEEEECT-TCCEE
T ss_pred cccceeccccccccccccccccceeEEeecccccccccceeeeccce----eEEc-c-ccccCCccceEEEcCC-CccEe
Confidence 000001122222222111111 1122233444556655554321 1111 1 4556667777777631 11111
Q ss_pred cCcCCCCCCCCceeEEEceecCCCCcchhccCCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeeccccCeeEE-EcCC
Q 036584 777 ASLQPLSHCQCLVDLRLSGRMKKLPEDMHVFLPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRCHYVKKLG-CRAE 855 (919)
Q Consensus 777 ~~~~~l~~~~~L~~L~L~~~~~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~-~~~~ 855 (919)
+-..+..+.+|+.+.+......++...+.-+++|+.+.+.++.++.....++.++++|+.+.|. +.. ..+. ..+.
T Consensus 255 -~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp-~~l--~~I~~~aF~ 330 (379)
T 4h09_A 255 -GSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP-TAL--KTIQVYAFK 330 (379)
T ss_dssp -CTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC-TTC--CEECTTTTT
T ss_pred -CccccceeehhccccccccceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC-ccc--cEEHHHHhh
Confidence 1223556777888887665555554444445788888887776654455667788888888876 222 1221 1234
Q ss_pred CCcccceeEEe
Q 036584 856 GFPLLEILQLD 866 (919)
Q Consensus 856 ~f~~L~~L~l~ 866 (919)
++.+|+.+.+.
T Consensus 331 ~C~~L~~i~ip 341 (379)
T 4h09_A 331 NCKALSTISYP 341 (379)
T ss_dssp TCTTCCCCCCC
T ss_pred CCCCCCEEEEC
Confidence 45666666553
No 250
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.28 E-value=0.056 Score=58.00 Aligned_cols=166 Identities=12% Similarity=-0.051 Sum_probs=104.0
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccC
Q 036584 214 LLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETK 293 (919)
Q Consensus 214 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~ 293 (919)
++.+.+. + .-.++..++|+.|.||++.+..+.+... ...|+....+......+.
T Consensus 8 ~l~~~l~-~-~~~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~----------------------- 61 (343)
T 1jr3_D 8 QLRAQLN-E-GLRAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDW----------------------- 61 (343)
T ss_dssp THHHHHH-H-CCCSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCH-----------------------
T ss_pred HHHHHHh-c-CCCcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCH-----------------------
Confidence 3444444 2 2356899999999999999998876311 223432212222222222
Q ss_pred CHHHHHHHHHH-HhccCceEEEEecccc---hhHHHHHHhhCCCCCCCcEEEEEecc-------hhhhhhcCCCCceEec
Q 036584 294 TEEDLARSLRK-SLEAYSYLMVIDDIWH---KEDWVSLKSAFPENKIGSRVIITTRI-------KDVAERSDDRNYVHEL 362 (919)
Q Consensus 294 ~~~~~~~~l~~-~l~~~~~LlVlDdv~~---~~~~~~l~~~l~~~~~gs~iivTtr~-------~~v~~~~~~~~~~~~l 362 (919)
.++.+.+.. -+-+.+-++|+|+++. .+.++.+...+..-..++.+|+++.. ..+...+......++.
T Consensus 62 --~~l~~~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~ 139 (343)
T 1jr3_D 62 --NAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTC 139 (343)
T ss_dssp --HHHHHHHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEE
T ss_pred --HHHHHHhcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEe
Confidence 333333222 2345677899999865 35678888877765567777776643 2344444444478999
Q ss_pred CCCChHhHHHHHHHHhccCCCCchhhHHHHHHHHHHcCCcchHHHHH
Q 036584 363 RFLRQDESWQLFCERAFRNSKAEKGLENLGREMVQKCDGLPLAIVVL 409 (919)
Q Consensus 363 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLal~~~ 409 (919)
.+++.++....+.+.+-.... .-..+.+..|++.++|.+..+...
T Consensus 140 ~~l~~~~l~~~l~~~~~~~g~--~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 140 QTPEQAQLPRWVAARAKQLNL--ELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp CCCCTTHHHHHHHHHHHHTTC--EECHHHHHHHHHSSTTCHHHHHHH
T ss_pred eCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhchHHHHHHHH
Confidence 999999999888877644332 122356788999999998877653
No 251
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.23 E-value=0.0096 Score=59.95 Aligned_cols=117 Identities=19% Similarity=0.185 Sum_probs=62.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccc------c---c-------
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTAL------E---D------- 289 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~------~---~------- 289 (919)
..++.|+|++|+|||||++.++...... -..++|++... ....+...+ ..++..... . .
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE--SRDSIIRQA-KQFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSS--CHHHHHHHH-HHTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEccc--CHHHHHHHH-HHhcchHHHHhhCCEEEEeccccccCc
Confidence 4589999999999999999998532111 12366766543 333333332 233221100 0 0
Q ss_pred ---cccCCHHHHHHHHHHHhc-cCce--EEEEeccc-----chhHHHHHHhhCCC--CCCCcEEEEEecch
Q 036584 290 ---LETKTEEDLARSLRKSLE-AYSY--LMVIDDIW-----HKEDWVSLKSAFPE--NKIGSRVIITTRIK 347 (919)
Q Consensus 290 ---~~~~~~~~~~~~l~~~l~-~~~~--LlVlDdv~-----~~~~~~~l~~~l~~--~~~gs~iivTtr~~ 347 (919)
....+..++...+.+.+. .++- +||+|... +......+...+.. ...|..||++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 011245666666666553 3444 99999986 22222333322221 12467888888765
No 252
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.22 E-value=0.0096 Score=72.53 Aligned_cols=47 Identities=21% Similarity=0.270 Sum_probs=37.4
Q ss_pred CCccccccCHHHHHHHHhcC-------CCCcEEEEEEecCCchHHHHHHHHHcc
Q 036584 203 ENPVGFEDDTDLLLAKLLDK-------EQRRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..++|.+..++.+...+... ......+.|+|++|+|||++|+.+++.
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~ 611 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 611 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 35799999888888877642 112358999999999999999999874
No 253
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.20 E-value=0.035 Score=59.49 Aligned_cols=101 Identities=22% Similarity=0.153 Sum_probs=60.6
Q ss_pred HHHHHHHHh-cCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccccccc-c
Q 036584 212 TDLLLAKLL-DKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALE-D 289 (919)
Q Consensus 212 ~~~l~~~L~-~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~-~ 289 (919)
...+...|. .+=....++.|+|.+|+||||||.+++..... .=..++|++....++.. .++.++...... -
T Consensus 46 ~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~--~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i 118 (349)
T 2zr9_A 46 SISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA--AGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLV 118 (349)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEE
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEE
Confidence 344555554 33223569999999999999999999863221 12358899988776653 234443321100 1
Q ss_pred cccCCHHHHHHHHHHHhc-cCceEEEEeccc
Q 036584 290 LETKTEEDLARSLRKSLE-AYSYLMVIDDIW 319 (919)
Q Consensus 290 ~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~ 319 (919)
....+.++....+....+ .+.-+||+|.+-
T Consensus 119 ~~~~~~e~~l~~~~~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 119 SQPDTGEQALEIADMLVRSGALDIIVIDSVA 149 (349)
T ss_dssp ECCSSHHHHHHHHHHHHTTTCCSEEEEECGG
T ss_pred ecCCCHHHHHHHHHHHHhcCCCCEEEEcChH
Confidence 122345566555555443 456799999974
No 254
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.20 E-value=0.026 Score=60.51 Aligned_cols=69 Identities=16% Similarity=0.167 Sum_probs=46.0
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccC----CCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 036584 213 DLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKN----KFDYCAWVSVSQDYKIKDLLLRIIKSFN 282 (919)
Q Consensus 213 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~ 282 (919)
..+...|..+=....++.|+|.+|+||||||..++....... .-..++|++....++...+. .++..++
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g 181 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFN 181 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcC
Confidence 445555544433467999999999999999999987422211 23578999998877766544 3444443
No 255
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.18 E-value=0.012 Score=62.70 Aligned_cols=106 Identities=15% Similarity=0.234 Sum_probs=61.0
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccC----CCCEEEEEEeCCCCCHHHHHHHHHHHhccccc--
Q 036584 213 DLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKN----KFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTA-- 286 (919)
Q Consensus 213 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-- 286 (919)
..+...|..+=....++.|+|.+|+||||||..++....... .-..++|++....++.+.+. +++..++....
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~ 172 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNV 172 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHH
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHH
Confidence 444444433322356999999999999999999986422211 12468999998877766554 34455433210
Q ss_pred ---ccccccCCHH---HHHHHHHHHhc--cCceEEEEeccc
Q 036584 287 ---LEDLETKTEE---DLARSLRKSLE--AYSYLMVIDDIW 319 (919)
Q Consensus 287 ---~~~~~~~~~~---~~~~~l~~~l~--~~~~LlVlDdv~ 319 (919)
..-....+.+ ++...+...++ .+.-+||+|.+.
T Consensus 173 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 173 MNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHTEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred hccEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 0001112222 34445555553 456688888873
No 256
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.04 E-value=0.014 Score=62.13 Aligned_cols=107 Identities=14% Similarity=0.128 Sum_probs=61.8
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccC---------CC-----CEEEEEEeCCCCCHHHHHHHH
Q 036584 212 TDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKN---------KF-----DYCAWVSVSQDYKIKDLLLRI 277 (919)
Q Consensus 212 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~---------~f-----~~~~wv~~~~~~~~~~~~~~i 277 (919)
...+...|..+=....++.|+|.+|+||||||..++....... .. ..++|++....++.+.+.. +
T Consensus 84 ~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~ 162 (322)
T 2i1q_A 84 SSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-M 162 (322)
T ss_dssp CHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-H
T ss_pred ChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-H
Confidence 3445555543323457999999999999999999886422211 11 4789999988877665553 3
Q ss_pred HHHhccccc-----ccccccCCHH---HHHHHHHHHhc--cCceEEEEeccc
Q 036584 278 IKSFNIMTA-----LEDLETKTEE---DLARSLRKSLE--AYSYLMVIDDIW 319 (919)
Q Consensus 278 l~~l~~~~~-----~~~~~~~~~~---~~~~~l~~~l~--~~~~LlVlDdv~ 319 (919)
+..++.... ..-....+.+ ++...+.+.++ .+.-+||+|.+-
T Consensus 163 ~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 163 AEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp HHHHTCCHHHHHHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred HHHcCCCHHHHhcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 444433210 0001112222 24444555554 345688888874
No 257
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.02 E-value=0.0024 Score=63.51 Aligned_cols=113 Identities=15% Similarity=0.019 Sum_probs=60.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHH
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRK 304 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 304 (919)
...++.|+|..|.||||++..+.+. ...+-..++.+....... ....++..++.... ........++...+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d~r---~~~~i~srlG~~~~--~~~~~~~~~i~~~i~~ 83 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKIDTR---SIRNIQSRTGTSLP--SVEVESAPEILNYIMS 83 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCCGG---GCSSCCCCCCCSSC--CEEESSTHHHHHHHHS
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccCch---HHHHHHHhcCCCcc--ccccCCHHHHHHHHHH
Confidence 3578999999999999999888873 333222344443332211 11123333332111 1112233455555555
Q ss_pred HhccCc-eEEEEecccch--hHHHHHHhhCCCCCCCcEEEEEecch
Q 036584 305 SLEAYS-YLMVIDDIWHK--EDWVSLKSAFPENKIGSRVIITTRIK 347 (919)
Q Consensus 305 ~l~~~~-~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~ 347 (919)
.+.+.+ -+||+|.+... +..+.+ ..+.+ .|..||+|.+..
T Consensus 84 ~~~~~~~dvViIDEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFDDRICEVA-NILAE--NGFVVIISGLDK 126 (223)
T ss_dssp TTSCTTCCEEEECSGGGSCTHHHHHH-HHHHH--TTCEEEEECCSB
T ss_pred HhhCCCCCEEEEecCccCcHHHHHHH-HHHHh--CCCeEEEEeccc
Confidence 554444 49999999643 233333 22222 267899999843
No 258
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.98 E-value=0.0068 Score=58.36 Aligned_cols=117 Identities=19% Similarity=0.073 Sum_probs=61.6
Q ss_pred EEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCC---CCHHHHHHHHHHHhcccccccc--ccc-------CC
Q 036584 227 LVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQD---YKIKDLLLRIIKSFNIMTALED--LET-------KT 294 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~il~~l~~~~~~~~--~~~-------~~ 294 (919)
..|.|++..|.||||.|--..- +..++=..+.++..-.. .....++..+ .+........ ... ..
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L--~v~~~~~g~gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPH--GVEFQVMATGFTWETQNREADTAA 104 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGG--TCEEEECCTTCCCCGGGHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhC--CcEEEEcccccccCCCCcHHHHHH
Confidence 4677888888999999987776 33333333555544332 2233333333 1111000000 000 11
Q ss_pred HHHHHHHHHHHhccCc-eEEEEecccch-----hHHHHHHhhCCCCCCCcEEEEEecch
Q 036584 295 EEDLARSLRKSLEAYS-YLMVIDDIWHK-----EDWVSLKSAFPENKIGSRVIITTRIK 347 (919)
Q Consensus 295 ~~~~~~~l~~~l~~~~-~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~iivTtr~~ 347 (919)
........++.+...+ =|||||++... -..+.+...+........||+|+|..
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 1223344445554444 49999998542 22344555555555567899999986
No 259
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.96 E-value=0.0039 Score=65.89 Aligned_cols=54 Identities=17% Similarity=0.155 Sum_probs=34.5
Q ss_pred CHHHHHHHHhcCCC-CcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeC
Q 036584 211 DTDLLLAKLLDKEQ-RRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVS 265 (919)
Q Consensus 211 ~~~~l~~~L~~~~~-~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 265 (919)
..+.+.+++..... ....+.|+|++|+|||+||..+++.... ..-..+++++++
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~-~~g~~v~~~~~~ 190 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSE-KKGVSTTLLHFP 190 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHH-HSCCCEEEEEHH
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEHH
Confidence 34455566665322 2468899999999999999999984220 222235566553
No 260
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.88 E-value=0.018 Score=62.00 Aligned_cols=101 Identities=18% Similarity=0.149 Sum_probs=61.4
Q ss_pred HHHHHHHHh-cCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccc-cc
Q 036584 212 TDLLLAKLL-DKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTAL-ED 289 (919)
Q Consensus 212 ~~~l~~~L~-~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~-~~ 289 (919)
...|...|. .+=....++.|+|.+|+||||||..++..... .-..++|++....++.. .+..++..... .-
T Consensus 59 ~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~--~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i 131 (366)
T 1xp8_A 59 SLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQK--AGGTCAFIDAEHALDPV-----YARALGVNTDELLV 131 (366)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEE
T ss_pred CHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHH--CCCeEEEEECCCChhHH-----HHHHcCCCHHHcee
Confidence 345555554 22223568999999999999999998864221 12358999998877654 23344332110 00
Q ss_pred cccCCHHHHHHHHHHHhc-cCceEEEEeccc
Q 036584 290 LETKTEEDLARSLRKSLE-AYSYLMVIDDIW 319 (919)
Q Consensus 290 ~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~ 319 (919)
.+..+.+++...+....+ ...-+||+|.+.
T Consensus 132 ~~~~~~e~~l~~l~~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 132 SQPDNGEQALEIMELLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp ECCSSHHHHHHHHHHHHTTTCCSEEEEECTT
T ss_pred ecCCcHHHHHHHHHHHHhcCCCCEEEEeChH
Confidence 122355666666666554 445699999974
No 261
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.78 E-value=0.021 Score=61.24 Aligned_cols=101 Identities=16% Similarity=0.114 Sum_probs=59.7
Q ss_pred HHHHHHHHh-cCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccc-cc
Q 036584 212 TDLLLAKLL-DKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTAL-ED 289 (919)
Q Consensus 212 ~~~l~~~L~-~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~-~~ 289 (919)
...+...|. .+=...+++.|+|.+|+||||||..++..... .-..++|++....++... +..++..... .-
T Consensus 48 ~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~--~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i 120 (356)
T 1u94_A 48 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLC 120 (356)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEE
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCCCccHHH-----HHHcCCChhheee
Confidence 344555554 23223569999999999999999998864221 223589999987776432 3344332110 00
Q ss_pred cccCCHHHHHHHHHHHh-ccCceEEEEeccc
Q 036584 290 LETKTEEDLARSLRKSL-EAYSYLMVIDDIW 319 (919)
Q Consensus 290 ~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~ 319 (919)
.+..+.+++...+.... ..+.-+||+|.+-
T Consensus 121 ~~~~~~e~~~~~~~~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 121 SQPDTGEQALEICDALARSGAVDVIVVDSVA 151 (356)
T ss_dssp ECCSSHHHHHHHHHHHHHHTCCSEEEEECGG
T ss_pred eCCCCHHHHHHHHHHHHhccCCCEEEEcCHH
Confidence 11224455555555444 3455699999974
No 262
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.76 E-value=0.056 Score=57.14 Aligned_cols=64 Identities=23% Similarity=0.157 Sum_probs=43.5
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 036584 213 DLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSF 281 (919)
Q Consensus 213 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 281 (919)
..+-+.+ .+=....++.|.|.+|+||||||..++.+....+ ..++|++.. .+...+...++...
T Consensus 56 ~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 56 TELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp HHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred HHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 4444444 3323456999999999999999999986432222 578888876 45666666666543
No 263
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.66 E-value=0.013 Score=59.79 Aligned_cols=23 Identities=30% Similarity=0.379 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
-.+++|+|++|+|||||++.++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 46999999999999999998883
No 264
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.41 E-value=0.25 Score=49.35 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
-.+++|+|+.|.|||||.+.++.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999986
No 265
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.40 E-value=0.04 Score=60.01 Aligned_cols=70 Identities=16% Similarity=0.237 Sum_probs=43.8
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCc----cCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 036584 212 TDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDV----KNKFDYCAWVSVSQDYKIKDLLLRIIKSFN 282 (919)
Q Consensus 212 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 282 (919)
...+...|..+=..-.++.|+|++|+|||||+..++-.... ...-..++|++....+....+ +.+++.++
T Consensus 164 ~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~g 237 (400)
T 3lda_A 164 SKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFG 237 (400)
T ss_dssp CHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred ChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcC
Confidence 34555555443233569999999999999999977532111 113356899988776655443 33555544
No 266
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.37 E-value=0.062 Score=54.46 Aligned_cols=36 Identities=28% Similarity=0.385 Sum_probs=28.0
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcc
Q 036584 214 LLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 214 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
.+..|+....+....|.|+|++|.|||.+|..+++.
T Consensus 92 ~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 92 VFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 456666554244567999999999999999999973
No 267
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.24 E-value=0.15 Score=51.27 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
-.+++|+|+.|+|||||++.++.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999986
No 268
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.21 E-value=0.2 Score=50.95 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
-.+++|+|+.|+|||||.+.++.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999985
No 269
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.05 E-value=0.014 Score=57.73 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=26.3
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHc
Q 036584 214 LLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 214 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
+|.+.+........+|+|+|+.|.|||||++.+..
T Consensus 10 ~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 10 GVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34444433233467999999999999999999986
No 270
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.97 E-value=0.082 Score=52.85 Aligned_cols=46 Identities=20% Similarity=0.351 Sum_probs=32.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcccCcc----CCCCEEEEEEeCCCCCH
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHNNDVK----NKFDYCAWVSVSQDYKI 270 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~ 270 (919)
.-.+++|+|++|+|||||++.++...... ..-..++|+.....+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 35699999999999999999997521111 12356888876654443
No 271
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.97 E-value=0.071 Score=57.16 Aligned_cols=105 Identities=14% Similarity=0.183 Sum_probs=57.0
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCC----CEEEEEEeCCCCCHHHHHHHHHHHhccccc---
Q 036584 214 LLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKF----DYCAWVSVSQDYKIKDLLLRIIKSFNIMTA--- 286 (919)
Q Consensus 214 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f----~~~~wv~~~~~~~~~~~~~~il~~l~~~~~--- 286 (919)
.+...|..+=..-.++.|+|++|+|||||+..++......... ..++|++....+.... +..+.+.......
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~-i~~i~q~~~~~~~~v~ 197 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVL 197 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH-HHHHHHTTTCCHHHHG
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH-HHHHHHHcCCCHHHHh
Confidence 3444443332346799999999999999999998742111111 2458998876654333 3334443322100
Q ss_pred --ccccccCC---HHHHHHHHHHHhc------cCceEEEEeccc
Q 036584 287 --LEDLETKT---EEDLARSLRKSLE------AYSYLMVIDDIW 319 (919)
Q Consensus 287 --~~~~~~~~---~~~~~~~l~~~l~------~~~~LlVlDdv~ 319 (919)
..-....+ ..++...+...+. .++-+||+|.+-
T Consensus 198 ~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~t 241 (349)
T 1pzn_A 198 KHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 241 (349)
T ss_dssp GGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSS
T ss_pred hCEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCch
Confidence 00000111 2233444444453 467799999874
No 272
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.86 E-value=0.05 Score=56.45 Aligned_cols=43 Identities=19% Similarity=0.128 Sum_probs=29.5
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccC--------CCCEEEEEEeCCCC
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKN--------KFDYCAWVSVSQDY 268 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~--------~f~~~~wv~~~~~~ 268 (919)
-.++.|+|++|+|||||+..++....... .-..+++++..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~ 80 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPP 80 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCH
Confidence 45999999999999999999885321110 01346777776543
No 273
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.86 E-value=0.066 Score=56.06 Aligned_cols=91 Identities=16% Similarity=0.158 Sum_probs=48.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHH--HHHHHHHHHhcccccccccccCCHHHH-HHH
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIK--DLLLRIIKSFNIMTALEDLETKTEEDL-ARS 301 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~il~~l~~~~~~~~~~~~~~~~~-~~~ 301 (919)
...+|.|+|++|+||||++..++.... ..-..+.++... .+... +-+...++..+.... +.....+...+ ...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~-~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAAD-TFRAAAIEQLKIWGERVGATVI-SHSEGADPAAVAFDA 178 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEE-CCSTTCCHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHH--hcCCEEEEEccc-cccHHHHHHHHHHHHHcCCcEE-ecCCccCHHHHHHHH
Confidence 357999999999999999999987322 221235555543 22221 222333333332111 11112222222 334
Q ss_pred HHHHhccCceEEEEeccc
Q 036584 302 LRKSLEAYSYLMVIDDIW 319 (919)
Q Consensus 302 l~~~l~~~~~LlVlDdv~ 319 (919)
+...+....-++|+|-.-
T Consensus 179 l~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 179 VAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHHTTCSEEEEEECC
T ss_pred HHHHHhcCCCEEEEECCC
Confidence 555555555688889763
No 274
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.83 E-value=0.019 Score=56.28 Aligned_cols=41 Identities=39% Similarity=0.551 Sum_probs=31.3
Q ss_pred cccCHHHHHHHHhcC-CCCcEEEEEEecCCchHHHHHHHHHc
Q 036584 208 FEDDTDLLLAKLLDK-EQRRLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 208 r~~~~~~l~~~L~~~-~~~~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
|++.++.+.+.+... .....+|+|.|+.|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344556677766653 23467999999999999999999986
No 275
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.82 E-value=0.016 Score=65.05 Aligned_cols=43 Identities=23% Similarity=0.284 Sum_probs=36.8
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..++|+++.++.+...+..+. -|.|+|++|+|||+||+.+++.
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~----~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC----EEEEECCSSSSHHHHHHHGGGG
T ss_pred hhhHHHHHHHHHHHHHHhcCC----eeEeecCchHHHHHHHHHHHHH
Confidence 468899888888888777653 6889999999999999999984
No 276
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.82 E-value=0.096 Score=57.43 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
...+|.++|.+|+||||++..++..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 3689999999999999999888763
No 277
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.81 E-value=0.24 Score=50.47 Aligned_cols=22 Identities=41% Similarity=0.475 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036584 227 LVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
.+++|+|+.|.|||||.+.++.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999985
No 278
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.77 E-value=0.018 Score=61.24 Aligned_cols=102 Identities=11% Similarity=0.042 Sum_probs=52.7
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCc-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhccccccccccc
Q 036584 214 LLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDV-KNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLET 292 (919)
Q Consensus 214 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~ 292 (919)
++++.+..-. +.+.++|+|++|+|||||++.+.+.... ...+.+ +++-+++..... .++.+.+.........+.
T Consensus 163 raID~~~pi~-rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER~~Ev---~~~~~~~~~~vV~atade 237 (422)
T 3ice_A 163 RVLDLASPIG-RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDERPEEV---TEMQRLVKGEVVASTFDE 237 (422)
T ss_dssp HHHHHHSCCB-TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSCHHHH---HHHHTTCSSEEEEECTTS
T ss_pred eeeeeeeeec-CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCChHHH---HHHHHHhCeEEEEeCCCC
Confidence 3445444422 2458899999999999999998863211 123344 356677654322 223333321100001111
Q ss_pred CCHH-----HHHHHHHHHh--ccCceEEEEecccc
Q 036584 293 KTEE-----DLARSLRKSL--EAYSYLMVIDDIWH 320 (919)
Q Consensus 293 ~~~~-----~~~~~l~~~l--~~~~~LlVlDdv~~ 320 (919)
.... ...-.+.+++ +++..||++||+-.
T Consensus 238 p~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR 272 (422)
T 3ice_A 238 PASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITR 272 (422)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchH
Confidence 1111 1111223333 58899999999853
No 279
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.73 E-value=0.013 Score=63.65 Aligned_cols=46 Identities=28% Similarity=0.302 Sum_probs=34.4
Q ss_pred CccccccCHHHHHHHHh-------------cCCCCcEEEEEEecCCchHHHHHHHHHcc
Q 036584 204 NPVGFEDDTDLLLAKLL-------------DKEQRRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 204 ~~vGr~~~~~~l~~~L~-------------~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
.++|.+..++.+...+. ........|.++|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 36787777777777663 11113457899999999999999999984
No 280
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.62 E-value=0.012 Score=63.30 Aligned_cols=112 Identities=16% Similarity=0.168 Sum_probs=63.3
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCC-CEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKF-DYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRK 304 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 304 (919)
..+++|+|+.|.|||||.+.+... ..... ..++.+.-.-.+..... ...-..... .... ......+..
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i~t~ed~~e~~~~~~-----~~~v~q~~~-~~~~---~~~~~~La~ 191 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHILTIEDPIEFVHESK-----KCLVNQREV-HRDT---LGFSEALRS 191 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEEEEEESSCCSCCCCS-----SSEEEEEEB-TTTB---SCHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEEEEccCcHHhhhhcc-----ccceeeeee-cccc---CCHHHHHHH
Confidence 359999999999999999998762 21111 12222221111110000 000000000 1111 223447888
Q ss_pred HhccCceEEEEecccchhHHHHHHhhCCCCCCCcEEEEEecchhhhh
Q 036584 305 SLEAYSYLMVIDDIWHKEDWVSLKSAFPENKIGSRVIITTRIKDVAE 351 (919)
Q Consensus 305 ~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 351 (919)
.|...+=+|++|+..+.+.++.+.... ..|..||+|+...+.+.
T Consensus 192 aL~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 192 ALREDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp HTTSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHHH
T ss_pred HhhhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHHH
Confidence 888889999999999877776655442 23666888888766553
No 281
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.52 E-value=0.0036 Score=60.50 Aligned_cols=22 Identities=27% Similarity=0.075 Sum_probs=19.1
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036584 227 LVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
.++.|+|+.|+||||++..++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999966665
No 282
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.52 E-value=0.16 Score=53.77 Aligned_cols=25 Identities=40% Similarity=0.474 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
...+++|+|+.|+||||+++.++..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999863
No 283
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.51 E-value=0.015 Score=55.67 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036584 227 LVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999997
No 284
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.49 E-value=0.28 Score=52.35 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
-.+++|+|+.|.|||||.+.+..
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHhc
Confidence 45899999999999999999985
No 285
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.49 E-value=0.0093 Score=71.76 Aligned_cols=151 Identities=14% Similarity=0.081 Sum_probs=80.1
Q ss_pred CCccccccCHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHH
Q 036584 203 ENPVGFEDDTDLLLAKLLDK-----------EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIK 271 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 271 (919)
.+++|.++.++.+.+.+... -.....+.++|++|+||||||+.+++. ....|- .++.+.-.+
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~--~~~~~i---~v~~~~l~~-- 549 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQANFI---SIKGPELLT-- 549 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHH--HTCCCC---CCCCSSSTT--
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHH--hCCCEE---EEechHhhh--
Confidence 46788888888887776532 013456889999999999999999984 333321 111111100
Q ss_pred HHHHHHHHHhcccccccccccCCHHHHHHHHHHHh-ccCceEEEEecccch----------------hHHHHHHhhCCCC
Q 036584 272 DLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSL-EAYSYLMVIDDIWHK----------------EDWVSLKSAFPEN 334 (919)
Q Consensus 272 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~~ 334 (919)
....... .....+.+.. ...+.+|++|+++.. .....++..+...
T Consensus 550 -----------------~~~g~~~-~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~ 611 (806)
T 1ypw_A 550 -----------------MWFGESE-ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 611 (806)
T ss_dssp -----------------CCTTTSS-HHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC--
T ss_pred -----------------hhcCccH-HHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcc
Confidence 0000111 2222333333 345679999998642 1124455555432
Q ss_pred C--CCcEEEEEecchhhh-hhcC---CCCceEecCCCChHhHHHHHHHHh
Q 036584 335 K--IGSRVIITTRIKDVA-ERSD---DRNYVHELRFLRQDESWQLFCERA 378 (919)
Q Consensus 335 ~--~gs~iivTtr~~~v~-~~~~---~~~~~~~l~~L~~~~~~~lf~~~~ 378 (919)
. .+..||.||...+.. .... -....+.++..+.++-.++++.+.
T Consensus 612 ~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l 661 (806)
T 1ypw_A 612 STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp ----CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTT
T ss_pred cccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHh
Confidence 2 233445555433221 1111 111466777788888888887665
No 286
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.48 E-value=0.033 Score=65.97 Aligned_cols=151 Identities=15% Similarity=0.151 Sum_probs=77.5
Q ss_pred CCccccccCHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHH
Q 036584 203 ENPVGFEDDTDLLLAKLLDK-----------EQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIK 271 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 271 (919)
.++.|.++.++.+.+.+... -...+-|.++|++|+|||.+|+.+++. .... ++.++. .
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e--~~~~-----f~~v~~----~ 545 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIKG----P 545 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT--TTCE-----EEECCH----H
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH--hCCc-----eEEecc----c
Confidence 45667777777766655432 123456889999999999999999984 3322 334431 1
Q ss_pred HHHHHHHHHhcccccccccccCCHHHHHHHHHHHh-ccCceEEEEecccch---------h-------HHHHHHhhCCCC
Q 036584 272 DLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSL-EAYSYLMVIDDIWHK---------E-------DWVSLKSAFPEN 334 (919)
Q Consensus 272 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~---------~-------~~~~l~~~l~~~ 334 (919)
+++... -... +..++.+.+.. +..+++|+||+++.. + ...+++..+...
T Consensus 546 ----~l~s~~---------vGes-e~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~ 611 (806)
T 3cf2_A 546 ----ELLTMW---------FGES-EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 611 (806)
T ss_dssp ----HHHTTT---------CSSC-HHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSS
T ss_pred ----hhhccc---------cchH-HHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCC
Confidence 122111 1122 23444455444 557899999999742 0 123344444332
Q ss_pred C--CCcEEEEEecchhh---hhhc-CCCCceEecCCCChHhHHHHHHHHh
Q 036584 335 K--IGSRVIITTRIKDV---AERS-DDRNYVHELRFLRQDESWQLFCERA 378 (919)
Q Consensus 335 ~--~gs~iivTtr~~~v---~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~ 378 (919)
. .+.-||-||...+. |-.- +-....+.++.-+.++-.++|+.+.
T Consensus 612 ~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 612 STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp CSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 2 23333334433321 1111 1122677787777777777776655
No 287
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.48 E-value=0.1 Score=52.73 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=29.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCC
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQD 267 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 267 (919)
..++.|.|++|+||||||..++.... ..=..++|++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~--~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGL--KMGEPGIYVALEEH 62 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEESSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccCC
Confidence 45899999999999999988875321 12235788876543
No 288
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.42 E-value=0.051 Score=55.58 Aligned_cols=111 Identities=19% Similarity=0.197 Sum_probs=58.9
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCC-CCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQ-DYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRK 304 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 304 (919)
..+++|+|+.|+|||||++.+..- ....+...+++.-.. .+-.... ..+...... ..+. ..+...+..
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~~i~~~~~~~-----~~~v~q~~~-gl~~---~~l~~~la~ 93 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYVFKHK-----KSIVNQREV-GEDT---KSFADALRA 93 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEESSCCSCCCCS-----SSEEEEEEB-TTTB---SCHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCCcceeecCCc-----ceeeeHHHh-CCCH---HHHHHHHHH
Confidence 569999999999999999998862 221112333332111 0000000 000000000 0111 123456667
Q ss_pred HhccCceEEEEecccchhHHHHHHhhCCCCCCCcEEEEEecchhhh
Q 036584 305 SLEAYSYLMVIDDIWHKEDWVSLKSAFPENKIGSRVIITTRIKDVA 350 (919)
Q Consensus 305 ~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 350 (919)
.+..++=+|++|+.-+.+....+.... ..|.-|++||...++.
T Consensus 94 aL~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 94 ALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp HHHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred HHhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 776678899999997655444433322 2366688888766543
No 289
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.40 E-value=0.52 Score=52.36 Aligned_cols=71 Identities=20% Similarity=0.102 Sum_probs=45.6
Q ss_pred ccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 036584 207 GFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSF 281 (919)
Q Consensus 207 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 281 (919)
|..--...+-..+ .+=....++.|.|.+|+||||+|..++.+.... .=..++|++... +...+...++...
T Consensus 182 ~i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE~--~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 182 GVRTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLEM--PAAQLTLRMMCSE 252 (444)
T ss_dssp -CCCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred cccCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECCC--CHHHHHHHHHHHH
Confidence 3334445565555 443345699999999999999999998742221 113478877763 4556666666543
No 290
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.36 E-value=0.086 Score=57.84 Aligned_cols=65 Identities=26% Similarity=0.361 Sum_probs=43.6
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCC-HHHHHHHHHHH
Q 036584 214 LLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYK-IKDLLLRIIKS 280 (919)
Q Consensus 214 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~ 280 (919)
++++.|..-. +-+-++|.|.+|+|||+|+.++.+.. .+.+-+.++++-+++... ..+++.++...
T Consensus 142 r~ID~l~pig-kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYA-KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEE-TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccc-cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 5566665421 23568999999999999999998742 223346678888887654 44566666543
No 291
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.33 E-value=0.025 Score=54.91 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=21.5
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
..+++|+|++|+|||||++.+..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999987
No 292
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.27 E-value=0.037 Score=57.60 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=23.2
Q ss_pred CCCcEEEEEEecCCchHHHHHHHHHcc
Q 036584 223 EQRRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 223 ~~~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
.....+|+|+|..|+||||||+.+...
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345679999999999999999998763
No 293
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.26 E-value=0.1 Score=57.16 Aligned_cols=25 Identities=40% Similarity=0.436 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
...+|.++|++|+||||++..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999988864
No 294
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.22 E-value=0.021 Score=54.43 Aligned_cols=20 Identities=50% Similarity=0.655 Sum_probs=18.8
Q ss_pred EEEEEEecCCchHHHHHHHH
Q 036584 227 LVISIYGMGGLGKTTLARKL 246 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v 246 (919)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 295
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.20 E-value=0.18 Score=52.58 Aligned_cols=90 Identities=19% Similarity=0.128 Sum_probs=47.8
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCC-HHHHHHHHHHHhcccccccccccCCHHHHHHHHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYK-IKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRK 304 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 304 (919)
..+++++|.+|+||||++..++.... ..-..+.++....... ..+.+.......+.... +.....+...+.....+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~--~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~-~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK--KKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVY-GEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH--HTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEE-CCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEE-ecCCCCCHHHHHHHHHH
Confidence 67999999999999999999886322 2222356665543222 22333333333222110 01112344455444444
Q ss_pred Hhc-cCceEEEEecc
Q 036584 305 SLE-AYSYLMVIDDI 318 (919)
Q Consensus 305 ~l~-~~~~LlVlDdv 318 (919)
.++ ..-=++++|-.
T Consensus 175 ~~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 554 33337888875
No 296
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.20 E-value=0.24 Score=52.36 Aligned_cols=54 Identities=19% Similarity=0.169 Sum_probs=38.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFN 282 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 282 (919)
...++.|.|.+|+||||+|..++.+... +=..++|++.. -+...+...++....
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlE--ms~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLE--MSAEQLALRALSDLT 98 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESS--SCHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCC--CCHHHHHHHHHHHhh
Confidence 3469999999999999999999875322 22457777765 456677777765543
No 297
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.19 E-value=0.021 Score=54.25 Aligned_cols=22 Identities=32% Similarity=0.230 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036584 227 LVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
.+|+|.|++|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999987
No 298
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.19 E-value=0.14 Score=56.51 Aligned_cols=104 Identities=21% Similarity=0.203 Sum_probs=61.7
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCC-HHHHHHHHHHHhccc-------c
Q 036584 214 LLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYK-IKDLLLRIIKSFNIM-------T 285 (919)
Q Consensus 214 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~-------~ 285 (919)
++++.|..-. +-+-++|.|.+|+|||+|+.++.+.. .+.+-+.++++-+++... ..+++.++...-... .
T Consensus 154 rvID~l~pig-kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~r 231 (498)
T 1fx0_B 154 KVVNLLAPYR-RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESK 231 (498)
T ss_dssp TTHHHHSCCC-TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCC
T ss_pred eEeeeecccc-cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccc
Confidence 4555555422 23468999999999999999998742 223446788888887664 445666665431111 0
Q ss_pred --------cccccccCCHHHHHHHHHHHhc---cCceEEEEeccc
Q 036584 286 --------ALEDLETKTEEDLARSLRKSLE---AYSYLMVIDDIW 319 (919)
Q Consensus 286 --------~~~~~~~~~~~~~~~~l~~~l~---~~~~LlVlDdv~ 319 (919)
+.+...........-.+.++++ ++..||++||+-
T Consensus 232 tvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 232 VALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp EEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 0000111122233444556663 588999999984
No 299
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.16 E-value=0.12 Score=53.87 Aligned_cols=24 Identities=38% Similarity=0.419 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..+++|+|++|+||||++..++..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 569999999999999999998863
No 300
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.10 E-value=0.025 Score=54.21 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036584 227 LVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999986
No 301
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.09 E-value=0.023 Score=55.58 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=21.3
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
.++|.|+|++|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 302
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.02 E-value=0.5 Score=48.91 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
..+++|+|+.|.|||||.+.++.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46999999999999999999986
No 303
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.91 E-value=0.027 Score=54.15 Aligned_cols=24 Identities=21% Similarity=0.494 Sum_probs=21.5
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
.++++|+|+.|+|||||++.+...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 458999999999999999999863
No 304
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.88 E-value=0.44 Score=53.08 Aligned_cols=69 Identities=22% Similarity=0.215 Sum_probs=43.3
Q ss_pred ccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 036584 207 GFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIK 279 (919)
Q Consensus 207 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 279 (919)
|..--...+.+.+ .+=....++.|.|.+|+||||||..++....... =..++|++... +...+...++.
T Consensus 185 ~i~tG~~~LD~~~-gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~~~ 253 (454)
T 2r6a_A 185 GIPTGFTELDRMT-SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRMLC 253 (454)
T ss_dssp SBCCSCHHHHHHH-SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCCCCcHHHHhhc-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHHHH
Confidence 3334445555555 3323456999999999999999999987532211 12578887654 34556655543
No 305
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.83 E-value=0.034 Score=54.44 Aligned_cols=24 Identities=42% Similarity=0.505 Sum_probs=22.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..+|+|+|++|+||||+|+.+...
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999999873
No 306
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.81 E-value=0.17 Score=55.37 Aligned_cols=24 Identities=42% Similarity=0.425 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..++.|+|++|+||||++..++..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999999873
No 307
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.78 E-value=0.028 Score=54.20 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
.+.|.|+|++|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999987
No 308
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.68 E-value=0.26 Score=54.19 Aligned_cols=40 Identities=33% Similarity=0.230 Sum_probs=27.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeC
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVS 265 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 265 (919)
..++|.|+|.+|+||||++..++........+ .+.-++..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~-kVllvd~D 138 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKK-KVLVVSAD 138 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCC-CEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEEecC
Confidence 46899999999999999999988632222122 35555554
No 309
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.67 E-value=0.025 Score=53.86 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036584 227 LVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
.+|+|+|++|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 310
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.64 E-value=0.038 Score=53.56 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=21.4
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 311
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.62 E-value=0.39 Score=53.15 Aligned_cols=70 Identities=23% Similarity=0.147 Sum_probs=44.7
Q ss_pred cccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 036584 206 VGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKS 280 (919)
Q Consensus 206 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 280 (919)
.|...-...+-+.+ .+=....++.|.|.+|+||||+|..++.+.... =..++|++.... ...+...++..
T Consensus 178 ~gi~TG~~~LD~~l-gGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEms--~~ql~~R~~~~ 247 (444)
T 3bgw_A 178 TGVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEMG--KKENIKRLIVT 247 (444)
T ss_dssp CSBCCSCHHHHHHH-SSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSSC--TTHHHHHHHHH
T ss_pred CCcCCCcHHHHhhc-CCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCCC--HHHHHHHHHHH
Confidence 34444455666655 332345699999999999999999998753222 235778776643 34455555543
No 312
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.62 E-value=0.12 Score=66.92 Aligned_cols=100 Identities=17% Similarity=0.141 Sum_probs=61.9
Q ss_pred HHHHHHHh-cCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccccc-cccc
Q 036584 213 DLLLAKLL-DKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTA-LEDL 290 (919)
Q Consensus 213 ~~l~~~L~-~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-~~~~ 290 (919)
..+..+|. .+=.+.+.|.|+|++|+|||+||.++..... .+=..++|+++...++... ++.++.... ..-.
T Consensus 1413 ~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~--~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~ 1485 (2050)
T 3cmu_A 1413 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCS 1485 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEE
T ss_pred HHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEEcccccCHHH-----HHHcCCCchhceee
Confidence 34555555 3323467999999999999999999987422 2223588998888776655 334432110 0001
Q ss_pred ccCCHHHHHHHHHHHh-ccCceEEEEeccc
Q 036584 291 ETKTEEDLARSLRKSL-EAYSYLMVIDDIW 319 (919)
Q Consensus 291 ~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~ 319 (919)
...+.++..+.+++.. +.+.-+||+|.+.
T Consensus 1486 ~~~~~E~~l~~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1486 QPDTGEQALEICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp CCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred cCChHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 1223455666666555 4567899999994
No 313
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.54 E-value=0.037 Score=53.69 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHHcc
Q 036584 227 LVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
.+|.|.|++|+||||+|+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999873
No 314
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.52 E-value=0.34 Score=48.57 Aligned_cols=104 Identities=16% Similarity=0.166 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHccc-CccCCC-CEEEEEEeCCCCCHHHHHHHHHHHhccccc---
Q 036584 212 TDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNN-DVKNKF-DYCAWVSVSQDYKIKDLLLRIIKSFNIMTA--- 286 (919)
Q Consensus 212 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~-~~~~~f-~~~~wv~~~~~~~~~~~~~~il~~l~~~~~--- 286 (919)
.++++..+..+ +.+.|.|+.|+||||+...+.-+. ...... ...+.+..........+...+...+.....
T Consensus 66 q~~~i~~i~~g----~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~ 141 (235)
T 3llm_A 66 ESEILEAISQN----SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSC 141 (235)
T ss_dssp HHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSE
T ss_pred HHHHHHHHhcC----CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceE
Confidence 44555555554 488999999999998766554321 111222 223333333222233334444433322100
Q ss_pred -------------ccccccCCHHHHHHHHHHHhccCceEEEEecccc
Q 036584 287 -------------LEDLETKTEEDLARSLRKSLEAYSYLMVIDDIWH 320 (919)
Q Consensus 287 -------------~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~ 320 (919)
....--.+...+.+.+...+.+ --+||+|+++.
T Consensus 142 g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~-~~~lVlDEah~ 187 (235)
T 3llm_A 142 GYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRG-ISHVIVDEIHE 187 (235)
T ss_dssp EEEETTEEECCCSSSEEEEEEHHHHHHHHHHCCTT-CCEEEECCTTS
T ss_pred EEeechhhccCCCCCeEEEECHHHHHHHHHhhhcC-CcEEEEECCcc
Confidence 0011113455666666554433 34899999986
No 315
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.41 E-value=0.026 Score=54.25 Aligned_cols=22 Identities=45% Similarity=0.634 Sum_probs=20.1
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036584 227 LVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
+.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999986
No 316
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.38 E-value=0.039 Score=52.47 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=19.5
Q ss_pred cEEEEEEecCCchHHHHHHHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLY 247 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~ 247 (919)
..+++|+|+.|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999654
No 317
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.33 E-value=0.23 Score=52.25 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..++|+|+|.+|+||||++..++..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999998863
No 318
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.32 E-value=0.04 Score=53.93 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=21.4
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
..+|+|.|+.|+|||||++.+..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 319
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.32 E-value=0.042 Score=54.19 Aligned_cols=24 Identities=29% Similarity=0.609 Sum_probs=21.8
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..+|+|+|+.|+|||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 568999999999999999999873
No 320
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.31 E-value=0.18 Score=55.42 Aligned_cols=62 Identities=23% Similarity=0.299 Sum_probs=37.6
Q ss_pred HHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCC-HHHHHHHHH
Q 036584 215 LLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYK-IKDLLLRII 278 (919)
Q Consensus 215 l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il 278 (919)
.++.|..-. +-+.++|+|.+|+|||||++.+....... .-+..+++-+++..+ ..+++.++.
T Consensus 141 ~ID~L~pi~-kGq~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 141 VVDLLAPYI-KGGKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp HHHHHSCEE-TTCEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred HHHHHhhhc-cCCEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhh
Confidence 455554321 12368899999999999999998742222 224456777776543 334444443
No 321
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.30 E-value=0.22 Score=51.89 Aligned_cols=90 Identities=20% Similarity=0.203 Sum_probs=46.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCH-HHHHHHHHHHhcccccccccccCCHHHHHHHHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKI-KDLLLRIIKSFNIMTALEDLETKTEEDLARSLRK 304 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 304 (919)
..+++|+|.+|+||||++..++.... ..-..+.++........ ...+.......+...- +.....+..++......
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~--~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~-~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVL-EVMDGESPESIRRRVEE 174 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH--HTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEE-ECCTTCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCcccHhHHHHHHHhcccCCeEEE-EcCCCCCHHHHHHHHHH
Confidence 57999999999999999999987422 22123555554322211 1112233333222110 00012334444433333
Q ss_pred Hh-ccCceEEEEecc
Q 036584 305 SL-EAYSYLMVIDDI 318 (919)
Q Consensus 305 ~l-~~~~~LlVlDdv 318 (919)
.+ ....=++|+|--
T Consensus 175 ~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 175 KARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHTCCEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 33 345558888975
No 322
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.28 E-value=0.37 Score=54.57 Aligned_cols=54 Identities=11% Similarity=0.044 Sum_probs=38.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSF 281 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 281 (919)
...++.|.|.+|+||||||..++.+.... +=..++|++... +...+...++...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 45689999999999999999998753222 123578887765 4566766665543
No 323
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.27 E-value=0.3 Score=52.51 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
-.+++|+|+.|+|||||.+.++-
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHc
Confidence 45899999999999999999985
No 324
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.25 E-value=0.045 Score=52.18 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=21.3
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
..+|+|+|++|+||||+++.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 325
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.21 E-value=0.044 Score=53.73 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.4
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..+++|+|+.|+|||||++.+...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 358999999999999999999863
No 326
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.19 E-value=0.046 Score=52.87 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036584 227 LVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
.+++|+|++|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999985
No 327
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.19 E-value=0.031 Score=54.79 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=21.4
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..+|+|.|++|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999873
No 328
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.17 E-value=0.036 Score=53.16 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
.++|.|.|++|+||||+|+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999999986
No 329
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.15 E-value=0.064 Score=51.80 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcc
Q 036584 212 TDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 212 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
+..+..++.. -++...+.|+|++|+||||+|..+++.
T Consensus 45 ~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 4455555544 223457999999999999999999874
No 330
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.14 E-value=0.056 Score=57.16 Aligned_cols=40 Identities=28% Similarity=0.427 Sum_probs=28.5
Q ss_pred ccCHHHHHHHHhcC--CCCcEEEEEEecCCchHHHHHHHHHc
Q 036584 209 EDDTDLLLAKLLDK--EQRRLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 209 ~~~~~~l~~~L~~~--~~~~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
++-.+.+++.+... .+....|.|+|++|+||||+++.++.
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 34445555555431 23456799999999999999998886
No 331
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.13 E-value=0.036 Score=54.49 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..++|+|+|++|+|||||++.+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999873
No 332
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.12 E-value=0.044 Score=55.88 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHHcc
Q 036584 227 LVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
++|.|.|++|+||||||+.++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999999873
No 333
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.08 E-value=0.043 Score=53.07 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036584 227 LVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 334
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.05 E-value=0.048 Score=52.56 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
...|+|.|++|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 335
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.04 E-value=0.051 Score=55.08 Aligned_cols=24 Identities=25% Similarity=0.162 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHHc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
....|+|.|++|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999986
No 336
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.04 E-value=0.043 Score=51.88 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=20.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHHc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
..++|+|.|++|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 337
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.99 E-value=0.049 Score=52.10 Aligned_cols=22 Identities=45% Similarity=0.625 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHHcc
Q 036584 228 VISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
No 338
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.99 E-value=0.054 Score=53.50 Aligned_cols=25 Identities=36% Similarity=0.432 Sum_probs=22.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
+.++|.|.|++|+||||.|+.++..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999873
No 339
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=92.98 E-value=0.39 Score=64.48 Aligned_cols=136 Identities=15% Similarity=0.144 Sum_probs=73.0
Q ss_pred EEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccc--cccCCHHHHHHHHHH
Q 036584 227 LVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALED--LETKTEEDLARSLRK 304 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~--~~~~~~~~~~~~l~~ 304 (919)
+-|.++|++|+|||++|+.+... . ..+ ..+.++.+...+...+...+-..+........ ....
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~--~-~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~----------- 1332 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRN--S-SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPK----------- 1332 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS--C-SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEB-----------
T ss_pred CeEEEECCCCCCHHHHHHHHHhc--C-CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCC-----------
Confidence 57889999999999999877763 2 223 35567777776666655555444332110000 0000
Q ss_pred HhccCceEEEEecccch--------hHHHHHHhhCCC------CCC------CcEEEEEecchh------hhhhcCCCCc
Q 036584 305 SLEAYSYLMVIDDIWHK--------EDWVSLKSAFPE------NKI------GSRVIITTRIKD------VAERSDDRNY 358 (919)
Q Consensus 305 ~l~~~~~LlVlDdv~~~--------~~~~~l~~~l~~------~~~------gs~iivTtr~~~------v~~~~~~~~~ 358 (919)
-.+++.++++||++-. ...+.+...+.. ... +..+|.++-... +.........
T Consensus 1333 -~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~ 1411 (2695)
T 4akg_A 1333 -SDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAA 1411 (2695)
T ss_dssp -SSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEE
T ss_pred -CCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheee
Confidence 0367889999997532 122233332211 111 233444443221 1111111115
Q ss_pred eEecCCCChHhHHHHHHHHh
Q 036584 359 VHELRFLRQDESWQLFCERA 378 (919)
Q Consensus 359 ~~~l~~L~~~~~~~lf~~~~ 378 (919)
.+.++..+.++-..+|....
T Consensus 1412 vi~i~~P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1412 ILYLGYPSGKSLSQIYEIYY 1431 (2695)
T ss_dssp EEECCCCTTTHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 68888888888888887654
No 340
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.98 E-value=0.038 Score=53.35 Aligned_cols=22 Identities=45% Similarity=0.634 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036584 227 LVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 341
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.97 E-value=0.06 Score=52.97 Aligned_cols=23 Identities=43% Similarity=0.644 Sum_probs=21.5
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
..+|+|+|++|+||||+|+.+..
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 342
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.96 E-value=0.073 Score=55.34 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHHc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
...+|.|.|++|+||||+|+.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 343
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.94 E-value=0.057 Score=53.29 Aligned_cols=24 Identities=46% Similarity=0.535 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHHc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
...+|+|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 344
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.89 E-value=0.053 Score=52.72 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 345
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.88 E-value=0.059 Score=52.70 Aligned_cols=24 Identities=38% Similarity=0.470 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHHc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
+..+|+|.|+.|+||||+|+.+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999997
No 346
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.87 E-value=0.051 Score=52.66 Aligned_cols=24 Identities=21% Similarity=0.535 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
.++|+|+|+.|+|||||++.+...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 568999999999999999999863
No 347
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.87 E-value=0.08 Score=57.71 Aligned_cols=105 Identities=10% Similarity=0.114 Sum_probs=56.5
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCcc--CCCCEEEEEEeCCCC-CHHHHHHHHHHHh--ccccccc
Q 036584 214 LLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVK--NKFDYCAWVSVSQDY-KIKDLLLRIIKSF--NIMTALE 288 (919)
Q Consensus 214 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~--~~f~~~~wv~~~~~~-~~~~~~~~il~~l--~~~~~~~ 288 (919)
+.++.|..-. +-+-++|.|.+|+|||+|+.++++..... ..=-.++++-+++.. ...+++.++...- ....-..
T Consensus 140 raID~l~pig-rGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~ 218 (465)
T 3vr4_D 140 SAIDHLNTLV-RGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFM 218 (465)
T ss_dssp HHHHTTSCCB-TTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEE
T ss_pred eEEecccccc-cCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEE
Confidence 4455554322 12346899999999999999999854331 111156667676554 3445555544421 1100000
Q ss_pred -ccccCC-----HHHHHHHHHHHhc---cCceEEEEeccc
Q 036584 289 -DLETKT-----EEDLARSLRKSLE---AYSYLMVIDDIW 319 (919)
Q Consensus 289 -~~~~~~-----~~~~~~~l~~~l~---~~~~LlVlDdv~ 319 (919)
..+... .....-.+.++++ ++..||++||+-
T Consensus 219 atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 219 NLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 111111 1112233455553 689999999984
No 348
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.83 E-value=0.054 Score=53.15 Aligned_cols=24 Identities=29% Similarity=0.695 Sum_probs=21.5
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..+|+|+|+.|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999873
No 349
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.83 E-value=0.054 Score=52.53 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
..+|+|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 350
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.77 E-value=0.031 Score=60.20 Aligned_cols=45 Identities=31% Similarity=0.281 Sum_probs=32.4
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..++|.+..++.+...+.... ..-|.|+|++|+|||+||+.+++.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHh
Confidence 458898875555444443322 234889999999999999999974
No 351
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.77 E-value=0.05 Score=53.25 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=20.2
Q ss_pred EEEEEecCCchHHHHHHHHHcc
Q 036584 228 VISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
.|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999873
No 352
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.68 E-value=0.045 Score=53.48 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=20.4
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
.++++|+|+.|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35789999999999999999986
No 353
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.66 E-value=0.064 Score=52.53 Aligned_cols=24 Identities=38% Similarity=0.407 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHHc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
...+|+|.|++|+||||+|+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999986
No 354
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.65 E-value=0.051 Score=51.82 Aligned_cols=21 Identities=48% Similarity=0.591 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 036584 228 VISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~ 248 (919)
.|.|.|++|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 355
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.63 E-value=0.056 Score=52.98 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=19.9
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 036584 228 VISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~ 248 (919)
+|+|.|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999986
No 356
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.61 E-value=0.066 Score=51.60 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
...+|.|.|++|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999874
No 357
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.61 E-value=0.21 Score=53.00 Aligned_cols=105 Identities=13% Similarity=0.117 Sum_probs=57.1
Q ss_pred EEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHHh
Q 036584 227 LVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRKSL 306 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l 306 (919)
..++|+|+.|.|||||++.+..- .. .-...+.+.-....... ....... -... .-......+...|
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~--~~-~~~g~i~i~~~~e~~~~--------~~~~~i~--~~~g-gg~~~r~~la~aL 237 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF--IP-KEERIISIEDTEEIVFK--------HHKNYTQ--LFFG-GNITSADCLKSCL 237 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG--SC-TTSCEEEEESSCCCCCS--------SCSSEEE--EECB-TTBCHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--Cc-CCCcEEEECCeeccccc--------cchhEEE--EEeC-CChhHHHHHHHHh
Confidence 48999999999999999999973 22 23445665533221100 0000000 0000 0112234456677
Q ss_pred ccCceEEEEecccchhHHHHHHhhCCCCCCCcEEEEEecchh
Q 036584 307 EAYSYLMVIDDIWHKEDWVSLKSAFPENKIGSRVIITTRIKD 348 (919)
Q Consensus 307 ~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 348 (919)
..++-+|++|+....+.++.+.. +..+ +.-+|+||...+
T Consensus 238 ~~~p~ilildE~~~~e~~~~l~~-~~~g--~~tvi~t~H~~~ 276 (330)
T 2pt7_A 238 RMRPDRIILGELRSSEAYDFYNV-LCSG--HKGTLTTLHAGS 276 (330)
T ss_dssp TSCCSEEEECCCCSTHHHHHHHH-HHTT--CCCEEEEEECSS
T ss_pred hhCCCEEEEcCCChHHHHHHHHH-HhcC--CCEEEEEEcccH
Confidence 77888999999987665554433 2221 222566665444
No 358
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.61 E-value=0.062 Score=51.71 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
...|+|.|++|+||||+|+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999986
No 359
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.60 E-value=0.13 Score=55.54 Aligned_cols=110 Identities=15% Similarity=0.162 Sum_probs=58.1
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCC-CEEEEEEeCCCCCHHHHHHHHHHHhcccccccccccCCHHHHHHHHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKF-DYCAWVSVSQDYKIKDLLLRIIKSFNIMTALEDLETKTEEDLARSLRK 304 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 304 (919)
..+++|+|+.|+||||+++.+... ..... ..++++...-... .. .....-... .. ..+...+...+..
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~--~~~~~~g~I~~~e~~~e~~----~~---~~~~~v~Q~-~~-g~~~~~~~~~l~~ 204 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYV----FK---HKKSIVNQR-EV-GEDTKSFADALRA 204 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHH--HHHHSCCEEEEEESSCCSC----CC---CSSSEEEEE-EB-TTTBSCSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh--cCcCCCcEEEEecccHhhh----hc---cCceEEEee-ec-CCCHHHHHHHHHH
Confidence 568999999999999999999863 22111 2233333211100 00 000000000 00 0011122446677
Q ss_pred HhccCceEEEEecccchhHHHHHHhhCCCCCCCcEEEEEecchhh
Q 036584 305 SLEAYSYLMVIDDIWHKEDWVSLKSAFPENKIGSRVIITTRIKDV 349 (919)
Q Consensus 305 ~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v 349 (919)
.+...+-+|++|.+.+.+....+.... ..|..|+.|+...++
T Consensus 205 ~L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~~ 246 (372)
T 2ewv_A 205 ALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 246 (372)
T ss_dssp HTTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCSH
T ss_pred HhhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcchH
Confidence 777778899999998766554433332 235567777765543
No 360
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=92.59 E-value=0.09 Score=57.28 Aligned_cols=105 Identities=12% Similarity=0.221 Sum_probs=56.6
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCcc--------CCCC-EEEEEEeCCCCC-HHHHHHHHHHH--h
Q 036584 214 LLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVK--------NKFD-YCAWVSVSQDYK-IKDLLLRIIKS--F 281 (919)
Q Consensus 214 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~--------~~f~-~~~wv~~~~~~~-~~~~~~~il~~--l 281 (919)
+.++.|..-. +-+-++|.|.+|+|||+|+.++++..... ++=+ .++++-+++... ..++..++... +
T Consensus 136 raID~l~pig-rGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~ 214 (464)
T 3gqb_B 136 STIDVMNTLV-RGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGAL 214 (464)
T ss_dssp HHHHTTSCCB-TTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGG
T ss_pred eeeecccccc-cCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccc
Confidence 4455454322 13356899999999999999999864431 1111 566776766543 44555554332 1
Q ss_pred cccccc-cccccCCHH-----HHHHHHHHHhc---cCceEEEEeccc
Q 036584 282 NIMTAL-EDLETKTEE-----DLARSLRKSLE---AYSYLMVIDDIW 319 (919)
Q Consensus 282 ~~~~~~-~~~~~~~~~-----~~~~~l~~~l~---~~~~LlVlDdv~ 319 (919)
....-. ...+..... ...-.+.++++ ++..||++||+-
T Consensus 215 ~rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 215 SRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp GGEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred cceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 110000 011111111 12233455553 688999999984
No 361
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.58 E-value=0.062 Score=55.07 Aligned_cols=23 Identities=30% Similarity=0.642 Sum_probs=21.3
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 362
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.58 E-value=0.05 Score=59.74 Aligned_cols=47 Identities=28% Similarity=0.374 Sum_probs=33.9
Q ss_pred CCccccccCHHHHHHHHhcC------------CCCcEEEEEEecCCchHHHHHHHHHcc
Q 036584 203 ENPVGFEDDTDLLLAKLLDK------------EQRRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..++|.++.++.+...+... ....+-|.++|++|+||||+|+.++..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 45777777777766555321 112456889999999999999999983
No 363
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.57 E-value=0.043 Score=52.84 Aligned_cols=21 Identities=33% Similarity=0.594 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 036584 228 VISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~ 248 (919)
+|.|.|++|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 364
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=92.56 E-value=0.15 Score=56.24 Aligned_cols=102 Identities=15% Similarity=0.178 Sum_probs=55.4
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHH-HHHHcccCccCCCCE-EEEEEeCCCCC-HHHHHHHHHHHhccccc--cc
Q 036584 214 LLLAKLLDKEQRRLVISIYGMGGLGKTTLA-RKLYHNNDVKNKFDY-CAWVSVSQDYK-IKDLLLRIIKSFNIMTA--LE 288 (919)
Q Consensus 214 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~-~~wv~~~~~~~-~~~~~~~il~~l~~~~~--~~ 288 (919)
+.++.+..-. +-+-++|.|.+|+|||+|| ..+.+.. .-+. ++++-+++... ..++...+...-..... ..
T Consensus 164 raID~l~Pig-rGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~ 238 (515)
T 2r9v_A 164 KAIDSMIPIG-RGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVV 238 (515)
T ss_dssp HHHHHHSCEE-TTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEE
T ss_pred cccccccccc-cCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEE
Confidence 4555555421 2346789999999999995 5777742 2443 57777776644 34455555432111100 00
Q ss_pred -ccccCCHH-----HHHHHHHHHh--ccCceEEEEecccc
Q 036584 289 -DLETKTEE-----DLARSLRKSL--EAYSYLMVIDDIWH 320 (919)
Q Consensus 289 -~~~~~~~~-----~~~~~l~~~l--~~~~~LlVlDdv~~ 320 (919)
..+..... ...-.+.+++ +++..||++||+-.
T Consensus 239 atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 239 ASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 11111111 1122334444 57899999999853
No 365
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.51 E-value=0.064 Score=52.66 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036584 227 LVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 366
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.51 E-value=0.057 Score=53.95 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036584 227 LVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
.+|+|+|++|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999986
No 367
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=92.50 E-value=0.16 Score=56.02 Aligned_cols=91 Identities=14% Similarity=0.172 Sum_probs=49.7
Q ss_pred cEEEEEEecCCchHHHHH-HHHHcccCccCCCC-EEEEEEeCCCCC-HHHHHHHHHHHhccc--------ccccccccCC
Q 036584 226 RLVISIYGMGGLGKTTLA-RKLYHNNDVKNKFD-YCAWVSVSQDYK-IKDLLLRIIKSFNIM--------TALEDLETKT 294 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~~~~~~-~~~~~~~il~~l~~~--------~~~~~~~~~~ 294 (919)
-+-++|.|.+|+|||+|| ..+.+.. . -+ .++++-+++... ..++...+...-... .+.+.....-
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~--~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 238 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQ--G--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL 238 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCC--T--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhh--c--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHH
Confidence 346789999999999995 5777742 2 34 357777776543 334444433211000 0000111111
Q ss_pred HHHHHHHHHHHh--ccCceEEEEecccc
Q 036584 295 EEDLARSLRKSL--EAYSYLMVIDDIWH 320 (919)
Q Consensus 295 ~~~~~~~l~~~l--~~~~~LlVlDdv~~ 320 (919)
.....-.+.+++ +++..||++||+-.
T Consensus 239 a~~~a~tiAEyfrd~G~dVLli~Dsltr 266 (507)
T 1fx0_A 239 APYTGAALAEYFMYRERHTLIIYDDLSK 266 (507)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 122233333444 58999999999853
No 368
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.44 E-value=0.068 Score=52.67 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
...|+|.|++|+||||+|+.+...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999874
No 369
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.43 E-value=0.06 Score=52.46 Aligned_cols=23 Identities=39% Similarity=0.382 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
..+|+|.|++|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 370
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=92.43 E-value=0.11 Score=56.87 Aligned_cols=105 Identities=12% Similarity=0.119 Sum_probs=57.2
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCC--CCEEEEEEeCCCC-CHHHHHHHHHHHhccccc--cc
Q 036584 214 LLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNK--FDYCAWVSVSQDY-KIKDLLLRIIKSFNIMTA--LE 288 (919)
Q Consensus 214 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~--~~ 288 (919)
++++.|..-. +-+-++|.|.+|+|||+|+.+++++...... =+.++++-+++.. ...+++.++...-..... ..
T Consensus 141 r~ID~l~pig-rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~ 219 (469)
T 2c61_A 141 STIDGTNTLV-RGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFL 219 (469)
T ss_dssp HHHHTTSCCB-TTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEE
T ss_pred Eeeeeeeccc-cCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEE
Confidence 4455554421 2345678899999999999999986443221 1356677676654 344555555543111100 00
Q ss_pred -ccccCC-----HHHHHHHHHHHh---ccCceEEEEeccc
Q 036584 289 -DLETKT-----EEDLARSLRKSL---EAYSYLMVIDDIW 319 (919)
Q Consensus 289 -~~~~~~-----~~~~~~~l~~~l---~~~~~LlVlDdv~ 319 (919)
..+... .....-.+.+++ +++..||++||+-
T Consensus 220 ~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 220 NLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 111111 111223344454 3689999999973
No 371
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.35 E-value=0.069 Score=51.64 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
..+|+|.|++|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 372
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.34 E-value=0.065 Score=54.39 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
..+|+|+|++|+|||||++.++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999995
No 373
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.33 E-value=0.082 Score=49.34 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=21.8
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..+++|+|+.|.|||||++.++.-
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 569999999999999999999873
No 374
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.32 E-value=0.051 Score=51.60 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036584 227 LVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999987
No 375
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.31 E-value=0.071 Score=54.35 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHHc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
...+|+|.|++|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 376
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.30 E-value=0.068 Score=52.59 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
..+++|+|+.|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45999999999999999999986
No 377
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.22 E-value=0.069 Score=50.26 Aligned_cols=24 Identities=33% Similarity=0.275 Sum_probs=21.8
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
.+++.|+|+.|+|||||+..+...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999999999873
No 378
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.20 E-value=0.088 Score=55.36 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=22.2
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHc
Q 036584 224 QRRLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 224 ~~~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
....+|+|.|+.|+|||||++.+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3466999999999999999999876
No 379
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.17 E-value=0.097 Score=53.33 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHHc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
...+|.|.|++|+||||+|+.+..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 380
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.15 E-value=0.088 Score=52.49 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
....|+|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999875
No 381
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.14 E-value=0.069 Score=52.23 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
...|.|.|++|+||||+|+.+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 382
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.13 E-value=0.049 Score=52.31 Aligned_cols=23 Identities=39% Similarity=0.397 Sum_probs=17.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 383
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.13 E-value=0.08 Score=55.66 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHHc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
...+|+|+|+.|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 467999999999999999999986
No 384
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.10 E-value=0.11 Score=55.15 Aligned_cols=53 Identities=11% Similarity=0.007 Sum_probs=34.4
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCc-cCCCCEEEEEEeCCC
Q 036584 213 DLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDV-KNKFDYCAWVSVSQD 267 (919)
Q Consensus 213 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~ 267 (919)
-++++.+..-. +-+-++|+|.+|+|||+|+..+.+.... ...+.+ +++-+++.
T Consensus 163 iraID~l~Pig-rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPIG-KGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDER 216 (427)
T ss_dssp HHHHHHHSCCB-TTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCC
T ss_pred chhhhhccccc-CCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccC
Confidence 45666665532 2456799999999999999999874221 123333 45666654
No 385
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.07 E-value=0.22 Score=50.30 Aligned_cols=49 Identities=20% Similarity=0.280 Sum_probs=32.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRI 277 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 277 (919)
..++.|.|.+|+|||++|.+++.+. ....-..+++++.... .+.+...+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E~~--~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLEER--ARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSSC--HHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeecccCC--HHHHHHHH
Confidence 4699999999999999999876531 1122234667766543 44444443
No 386
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.02 E-value=0.32 Score=62.99 Aligned_cols=108 Identities=15% Similarity=0.096 Sum_probs=68.6
Q ss_pred ccccccCHHHHHHHHh-cCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcc
Q 036584 205 PVGFEDDTDLLLAKLL-DKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNI 283 (919)
Q Consensus 205 ~vGr~~~~~~l~~~L~-~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 283 (919)
..+..--...+...|. .+=....++.|+|++|+||||||.+++..... .=..++|++....++... ++.++.
T Consensus 361 ~~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~--~G~~vlyis~E~s~~~~~-----a~~lGv 433 (2050)
T 3cmu_A 361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIY-----ARKLGV 433 (2050)
T ss_dssp CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEECTTSCCCHHH-----HHHTTC
T ss_pred CceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHh--cCCeEEEEEcCCCHHHHH-----HHHcCC
Confidence 3444455566777665 33234569999999999999999999874322 223589999888777542 444443
Q ss_pred ccccc-ccccCCHHHHHHHHHHHh-ccCceEEEEeccc
Q 036584 284 MTALE-DLETKTEEDLARSLRKSL-EAYSYLMVIDDIW 319 (919)
Q Consensus 284 ~~~~~-~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~ 319 (919)
....- -.+..+.+++...+.... +.+.-+||+|-+.
T Consensus 434 d~~~L~I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 434 DIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp CTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred CHHHeEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHH
Confidence 21100 112345667766666554 3556799999985
No 387
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.02 E-value=0.073 Score=50.22 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 036584 228 VISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~ 248 (919)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 388
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.02 E-value=0.064 Score=53.27 Aligned_cols=24 Identities=38% Similarity=0.563 Sum_probs=21.4
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..+++|+|+.|+|||||++.+...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 458999999999999999999873
No 389
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.91 E-value=0.077 Score=52.76 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
...|.|.|++|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
No 390
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.90 E-value=0.14 Score=49.62 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=20.1
Q ss_pred EEEEEecCCchHHHHHHHHHcc
Q 036584 228 VISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
.|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 391
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.88 E-value=0.084 Score=52.12 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=21.3
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 392
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=91.86 E-value=0.087 Score=55.42 Aligned_cols=41 Identities=22% Similarity=0.313 Sum_probs=28.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCC
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQD 267 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 267 (919)
+.+||+|+|-|||||||.+..+.. .....=..+.-|++...
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~--aLA~~GkkVllID~Dpq 87 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSA--AFSILGKRVLQIGCDPK 87 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEESSS
T ss_pred CceEEEEECCCccCHHHHHHHHHH--HHHHCCCeEEEEecCCC
Confidence 478999999999999998877765 22222223667776643
No 393
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.85 E-value=0.34 Score=53.62 Aligned_cols=24 Identities=42% Similarity=0.577 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHHc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
...+++|+|..|+|||||++.++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 457999999999999999999986
No 394
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.85 E-value=0.23 Score=63.35 Aligned_cols=104 Identities=15% Similarity=0.112 Sum_probs=65.8
Q ss_pred ccCHHHHHHHHh-cCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcccccc
Q 036584 209 EDDTDLLLAKLL-DKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTAL 287 (919)
Q Consensus 209 ~~~~~~l~~~L~-~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~ 287 (919)
..-...+...|. .+=...+++.|+|.+|+||||||.+++..... .=..++|++....++... ++.++.....
T Consensus 365 sTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~--~G~~vlyis~E~s~~~~~-----a~~lGvd~~~ 437 (1706)
T 3cmw_A 365 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIY-----ARKLGVDIDN 437 (1706)
T ss_dssp CCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEECTTSCCCHHH-----HHHTTCCGGG
T ss_pred ccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH--hCCCeEEEEccCchHHHH-----HHHcCCCHHH
Confidence 333456666664 33234569999999999999999999874222 224689999988877531 4444432110
Q ss_pred -cccccCCHHHHHHHHHHHh-ccCceEEEEeccc
Q 036584 288 -EDLETKTEEDLARSLRKSL-EAYSYLMVIDDIW 319 (919)
Q Consensus 288 -~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~ 319 (919)
.-.+..+.+++...+.... +.+.-+||+|-+.
T Consensus 438 L~i~~~~~~e~~l~~l~~lv~~~~~~lVVIDSL~ 471 (1706)
T 3cmw_A 438 LLCSQPDTGEQALEICDALARSGAVDVIVVDSVA 471 (1706)
T ss_dssp CEEECCSSHHHHHHHHHHHHHHTCCSEEEESCST
T ss_pred eEEcCCCCHHHHHHHHHHHHHhcCCCEEEECCHH
Confidence 0112335566666666555 3456799999985
No 395
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.83 E-value=0.083 Score=52.40 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..+++|+|+.|+|||||.+.+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 569999999999999999999863
No 396
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.82 E-value=0.078 Score=53.02 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
...|.|.|++|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999987
No 397
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.78 E-value=0.084 Score=52.02 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..+|+|.|+.|+||||+|+.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 398
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.72 E-value=0.082 Score=51.21 Aligned_cols=21 Identities=52% Similarity=0.835 Sum_probs=19.9
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 036584 228 VISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~ 248 (919)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 399
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.71 E-value=0.099 Score=52.97 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
..+|+|.|+.|+|||||++.+..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999999976
No 400
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.71 E-value=0.096 Score=50.05 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
..+|+|.|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 401
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.70 E-value=0.088 Score=53.61 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=21.3
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
..+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999996
No 402
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.66 E-value=0.073 Score=50.42 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHHcc
Q 036584 227 LVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
++++|+|..|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999863
No 403
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.64 E-value=0.086 Score=52.33 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
+..+|+|+|.+|+|||||+..+...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3679999999999999999999874
No 404
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.62 E-value=0.056 Score=53.40 Aligned_cols=22 Identities=45% Similarity=0.638 Sum_probs=20.1
Q ss_pred EEEEEecCCchHHHHHHHHHcc
Q 036584 228 VISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
+|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999863
No 405
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.62 E-value=0.68 Score=51.83 Aligned_cols=25 Identities=40% Similarity=0.470 Sum_probs=21.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..++|+|+|.+|+||||++..++..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999863
No 406
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.60 E-value=0.094 Score=50.74 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHHc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
.-.+|+|.|+.|+||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 407
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=91.57 E-value=0.23 Score=54.85 Aligned_cols=102 Identities=16% Similarity=0.191 Sum_probs=55.2
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHH-HHHHcccCccCCCCE-EEEEEeCCCCC-HHHHHHHHHHHhccccc--cc
Q 036584 214 LLLAKLLDKEQRRLVISIYGMGGLGKTTLA-RKLYHNNDVKNKFDY-CAWVSVSQDYK-IKDLLLRIIKSFNIMTA--LE 288 (919)
Q Consensus 214 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~-~~wv~~~~~~~-~~~~~~~il~~l~~~~~--~~ 288 (919)
+.++.+..-. +-+-++|.|.+|+|||+|| ..+.+.. +-+. ++++-+++... ..++...+...-..... ..
T Consensus 151 raID~l~Pig-rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~ 225 (502)
T 2qe7_A 151 KAIDSMIPIG-RGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVT 225 (502)
T ss_dssp HHHHHSSCCB-TTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEE
T ss_pred eecccccccc-cCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEE
Confidence 4555554422 2346789999999999995 5777742 2343 47777776644 34445554432111000 00
Q ss_pred -ccccCCHHH-----HHHHHHHHh--ccCceEEEEecccc
Q 036584 289 -DLETKTEED-----LARSLRKSL--EAYSYLMVIDDIWH 320 (919)
Q Consensus 289 -~~~~~~~~~-----~~~~l~~~l--~~~~~LlVlDdv~~ 320 (919)
..+...... ..-.+.+++ +++..||++||+-.
T Consensus 226 atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 226 ASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 111111111 122334444 57899999999853
No 408
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.50 E-value=0.098 Score=54.75 Aligned_cols=24 Identities=38% Similarity=0.540 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHHc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
...+|+|+|++|+||||+++.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 356999999999999999999986
No 409
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.50 E-value=0.16 Score=54.74 Aligned_cols=38 Identities=29% Similarity=0.392 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcc
Q 036584 212 TDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 212 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
...+.+.+.....+..+|+|+|.+|+|||||+..+...
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 34455555544456789999999999999999998763
No 410
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.46 E-value=0.16 Score=51.03 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=25.5
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEE
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWV 262 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 262 (919)
-.+++|+|+.|+|||||++.+.. ......+.+++
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G---l~~p~~G~I~~ 64 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC---LDKPTEGEVYI 64 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT---SSCCSEEEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhc---CCCCCceEEEE
Confidence 45899999999999999999985 22333444444
No 411
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.41 E-value=0.11 Score=51.32 Aligned_cols=24 Identities=42% Similarity=0.559 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..+|.|.|++|+||||+|+.+...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 412
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.40 E-value=0.085 Score=52.53 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
...|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999987
No 413
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.32 E-value=0.098 Score=51.16 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
...|+|.|+.|+||||+++.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999973
No 414
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.29 E-value=0.47 Score=52.12 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
...+|.|+|++|+||||+|+.++..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999999873
No 415
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.23 E-value=0.22 Score=48.41 Aligned_cols=49 Identities=16% Similarity=0.221 Sum_probs=29.8
Q ss_pred EEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 036584 228 VISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRII 278 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 278 (919)
.|+|-|..|+||||.++.+++. ....-..+++..-.......+.++.++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~--L~~~g~~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY--LEKRGKKVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCCCCcHHHHHHHHh
Confidence 4788999999999999999873 332222344443333333344444444
No 416
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.20 E-value=0.099 Score=51.72 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=19.3
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 036584 228 VISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~ 248 (919)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 417
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.09 E-value=0.12 Score=53.45 Aligned_cols=24 Identities=29% Similarity=0.592 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHHc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999999983
No 418
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=91.08 E-value=0.33 Score=53.40 Aligned_cols=103 Identities=15% Similarity=0.187 Sum_probs=54.7
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHH-HHHHcccCccCCCCEEEEEEeCCCCC-HHHHHHHHHHHhccc--cccc-
Q 036584 214 LLLAKLLDKEQRRLVISIYGMGGLGKTTLA-RKLYHNNDVKNKFDYCAWVSVSQDYK-IKDLLLRIIKSFNIM--TALE- 288 (919)
Q Consensus 214 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~--~~~~- 288 (919)
+.++.|..-. +-+-++|.|..|+|||+|| ..+.+. +..--.++++-+++... ..++...+...-... .-..
T Consensus 151 kaID~l~Pig-rGQR~~Ifg~~g~GKT~l~l~~I~n~---~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~a 226 (513)
T 3oaa_A 151 KAVDSMIPIG-RGQRELIIGDRQTGKTALAIDAIINQ---RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVA 226 (513)
T ss_dssp HHHHHHSCCB-TTCBCEEEESSSSSHHHHHHHHHHTT---SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEE
T ss_pred eeeccccccc-cCCEEEeecCCCCCcchHHHHHHHhh---ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEE
Confidence 4555555422 2346789999999999996 567763 22222357888887644 345555543321110 0000
Q ss_pred ccccCCHH-----HHHHHHHHHh--ccCceEEEEecccc
Q 036584 289 DLETKTEE-----DLARSLRKSL--EAYSYLMVIDDIWH 320 (919)
Q Consensus 289 ~~~~~~~~-----~~~~~l~~~l--~~~~~LlVlDdv~~ 320 (919)
..+..... .....+.+++ +++..||++||+-.
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 265 (513)
T 3oaa_A 227 TASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSK 265 (513)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChHH
Confidence 11111111 1122233444 58899999999853
No 419
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.07 E-value=0.092 Score=50.68 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHHcc
Q 036584 228 VISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
+++|+|+.|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999998864
No 420
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.99 E-value=0.2 Score=58.12 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=35.5
Q ss_pred CCccccccCHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcc
Q 036584 203 ENPVGFEDDTDLLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 203 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..++|.+..++.+...+..+ ..+.|+|++|+||||||+.++..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhcc
Confidence 45788887777777777664 48899999999999999999983
No 421
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.98 E-value=0.11 Score=51.48 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=19.3
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 036584 228 VISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~ 248 (919)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999986
No 422
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.97 E-value=1.1 Score=51.67 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
-.+++|+|+.|+|||||.+.+.-
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhc
Confidence 45999999999999999999985
No 423
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.95 E-value=0.086 Score=53.40 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036584 227 LVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
.+|+|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 424
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.90 E-value=0.18 Score=51.90 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
-.+++|+|+.|+|||||++.+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999999985
No 425
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.89 E-value=0.13 Score=50.95 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 426
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.79 E-value=0.19 Score=51.28 Aligned_cols=23 Identities=43% Similarity=0.520 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
-.+++|+|+.|+|||||++.++.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999985
No 427
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.76 E-value=0.13 Score=50.51 Aligned_cols=23 Identities=30% Similarity=0.232 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHHcc
Q 036584 227 LVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
.+++|+|+.|.|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999853
No 428
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.76 E-value=0.14 Score=53.79 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=21.5
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
.++|+|+|+.|+||||||..++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999997
No 429
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.74 E-value=0.12 Score=52.02 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036584 227 LVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
.+++|+|+.|.|||||.+.++.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999985
No 430
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.74 E-value=0.13 Score=53.69 Aligned_cols=24 Identities=50% Similarity=0.548 Sum_probs=21.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..+++|+|+.|+||||+++.++.-
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 579999999999999999999863
No 431
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.65 E-value=0.083 Score=52.97 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=16.4
Q ss_pred cEEEEEEecCCchHHHHHHHHH-c
Q 036584 226 RLVISIYGMGGLGKTTLARKLY-H 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~-~ 248 (919)
..+++|+|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 3589999999999999999998 5
No 432
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.65 E-value=0.12 Score=51.50 Aligned_cols=23 Identities=39% Similarity=0.385 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
-.+++|+|+.|+|||||.+.++.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999985
No 433
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.65 E-value=0.11 Score=51.64 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHHcc
Q 036584 227 LVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..|.|.|++|+||||+|+.+...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999873
No 434
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=90.62 E-value=0.38 Score=53.15 Aligned_cols=106 Identities=18% Similarity=0.251 Sum_probs=56.2
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHH-HHHHcccCc----cCCCC-EEEEEEeCCCCC-HHHHHHHHHHHhccccc
Q 036584 214 LLLAKLLDKEQRRLVISIYGMGGLGKTTLA-RKLYHNNDV----KNKFD-YCAWVSVSQDYK-IKDLLLRIIKSFNIMTA 286 (919)
Q Consensus 214 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa-~~v~~~~~~----~~~f~-~~~wv~~~~~~~-~~~~~~~il~~l~~~~~ 286 (919)
+.++.+..-. +-+-++|.|.+|+|||+|| ..+.+.... .++-+ .++++-+++... ..++...+...-.....
T Consensus 151 raID~l~Pig-rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~t 229 (510)
T 2ck3_A 151 KAVDSLVPIG-RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYT 229 (510)
T ss_dssp HHHHHHSCCB-TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGE
T ss_pred eeeccccccc-cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccc
Confidence 4566555422 2346789999999999995 567664221 12233 467777776644 34455555432111000
Q ss_pred --cc-ccccCCHH-----HHHHHHHHHh--ccCceEEEEecccc
Q 036584 287 --LE-DLETKTEE-----DLARSLRKSL--EAYSYLMVIDDIWH 320 (919)
Q Consensus 287 --~~-~~~~~~~~-----~~~~~l~~~l--~~~~~LlVlDdv~~ 320 (919)
.. ..+..... ...-.+.+++ +++..||++||+-.
T Consensus 230 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 230 IVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred eEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence 00 11111111 1122334444 57899999999853
No 435
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=90.62 E-value=0.9 Score=52.38 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
..+++|+|+.|.|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999985
No 436
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.58 E-value=0.13 Score=50.48 Aligned_cols=78 Identities=17% Similarity=0.226 Sum_probs=43.0
Q ss_pred EEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccc---c--cccccccCCHHHHHHHH
Q 036584 228 VISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIM---T--ALEDLETKTEEDLARSL 302 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~---~--~~~~~~~~~~~~~~~~l 302 (919)
+|.|.|++|+||||.|+.++.. |. ...++. .+++++-+..-... . ....-.....+-....+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~------~g-~~~ist------GdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv 68 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE------KG-FVHIST------GDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALI 68 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH------HC-CEEEEH------HHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH------HC-CeEEcH------HHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHH
Confidence 5789999999999999999973 21 223333 34444333221100 0 00000112334556667
Q ss_pred HHHhccCceEEEEeccc
Q 036584 303 RKSLEAYSYLMVIDDIW 319 (919)
Q Consensus 303 ~~~l~~~~~LlVlDdv~ 319 (919)
.+.+..... +|||+.-
T Consensus 69 ~~~l~~~~~-~ilDGfP 84 (206)
T 3sr0_A 69 EEVFPKHGN-VIFDGFP 84 (206)
T ss_dssp HHHCCSSSC-EEEESCC
T ss_pred HHhhccCCc-eEecCCc
Confidence 777755443 6889874
No 437
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.57 E-value=0.12 Score=51.41 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 438
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.55 E-value=0.21 Score=49.87 Aligned_cols=24 Identities=38% Similarity=0.606 Sum_probs=22.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
...|+|.|++|+||||+++.+...
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 568999999999999999999984
No 439
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.52 E-value=0.13 Score=54.24 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=21.2
Q ss_pred EEEEEEecCCchHHHHHHHHHcc
Q 036584 227 LVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
.+|+|.|+.|+||||||..++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999999873
No 440
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.51 E-value=0.14 Score=53.07 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=21.3
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
.++|+|.|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999999997
No 441
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.51 E-value=0.15 Score=53.58 Aligned_cols=24 Identities=42% Similarity=0.437 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHHc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
...+|+|.|+.|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999986
No 442
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.49 E-value=0.26 Score=51.43 Aligned_cols=51 Identities=16% Similarity=0.157 Sum_probs=32.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIK 279 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 279 (919)
..+++|.|++|+|||||++.++....... =..++|++... ....+...++.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~-G~~v~~~~~e~--~~~~~~~r~~~ 85 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLIG 85 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTS-CCCEEEEESSS--CHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHc-CCeEEEEeCcC--CHHHHHHHHHH
Confidence 45999999999999999999987422221 11466766543 33444444433
No 443
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.39 E-value=0.22 Score=50.78 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
-.+++|+|+.|+|||||++.++.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 45899999999999999999985
No 444
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.38 E-value=0.2 Score=46.96 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHHcc
Q 036584 227 LVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 445
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.35 E-value=0.14 Score=53.71 Aligned_cols=22 Identities=36% Similarity=0.347 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036584 227 LVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
++|.|+|+.|+||||||..++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999997
No 446
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.28 E-value=0.22 Score=50.37 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
-.+++|+|+.|.|||||++.++.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999985
No 447
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.24 E-value=0.14 Score=48.60 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
.++++|+|+.|+|||||+..+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 568999999999999999999873
No 448
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.22 E-value=0.14 Score=50.53 Aligned_cols=21 Identities=29% Similarity=0.256 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 036584 228 VISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~ 248 (919)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 449
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.20 E-value=0.22 Score=50.06 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
-.+++|+|+.|.|||||.+.++.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999985
No 450
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.15 E-value=0.13 Score=49.35 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHHcc
Q 036584 228 VISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999873
No 451
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.14 E-value=0.14 Score=50.13 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=20.1
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 036584 228 VISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~ 248 (919)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999987
No 452
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.13 E-value=0.22 Score=50.91 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
-.+++|+|+.|.|||||++.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 45899999999999999999986
No 453
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.10 E-value=0.14 Score=50.97 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 036584 228 VISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~ 248 (919)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 454
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.05 E-value=0.15 Score=49.24 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=21.4
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
.-.|+|+|.+|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999874
No 455
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.05 E-value=0.24 Score=50.79 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
-.+++|+|+.|+|||||++.++.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999985
No 456
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.05 E-value=0.24 Score=53.36 Aligned_cols=35 Identities=26% Similarity=0.172 Sum_probs=26.3
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHc
Q 036584 214 LLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 214 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
.+++-+.-.-....+++|+|++|+|||||++.++.
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 33444433333456999999999999999999997
No 457
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=89.95 E-value=1 Score=51.61 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHHcc
Q 036584 227 LVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
+++.|.|.+|.||||++..+...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~ 227 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADL 227 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 58899999999999999998863
No 458
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.89 E-value=0.16 Score=50.92 Aligned_cols=24 Identities=38% Similarity=0.394 Sum_probs=21.3
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
...|.|.|++|+||||+|+.+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999873
No 459
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=89.73 E-value=0.21 Score=47.70 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
...-|+|+|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999874
No 460
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.71 E-value=0.18 Score=50.89 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
-.+++|+|+.|.|||||++.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 56999999999999999999975
No 461
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=89.69 E-value=1.2 Score=60.37 Aligned_cols=85 Identities=16% Similarity=0.101 Sum_probs=52.4
Q ss_pred HHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccccc---ccccc
Q 036584 215 LLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTA---LEDLE 291 (919)
Q Consensus 215 l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---~~~~~ 291 (919)
+++.+... .+.|.++|++|+|||++++.+... .. .+ ..+.++.+..-+...++..+-..+..... ..-..
T Consensus 1296 ll~~ll~~---~~pvLL~GptGtGKT~li~~~L~~--l~-~~-~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~ 1368 (3245)
T 3vkg_A 1296 VLHAWLSE---HRPLILCGPPGSGKTMTLTSTLRA--FP-DF-EVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLR 1368 (3245)
T ss_dssp HHHHHHHT---TCCCEEESSTTSSHHHHHHHHGGG--CT-TE-EEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEE
T ss_pred HHHHHHHC---CCcEEEECCCCCCHHHHHHHHHHh--CC-CC-ceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccC
Confidence 44444443 246789999999999998887752 22 22 35678888888877777666444432110 00000
Q ss_pred cCCHHHHHHHHHHHh-ccCceEEEEeccc
Q 036584 292 TKTEEDLARSLRKSL-EAYSYLMVIDDIW 319 (919)
Q Consensus 292 ~~~~~~~~~~l~~~l-~~~~~LlVlDdv~ 319 (919)
. . .||+.++++||+.
T Consensus 1369 p-------------~~~Gk~~VlFiDDiN 1384 (3245)
T 3vkg_A 1369 P-------------TQLGKWLVVFCDEIN 1384 (3245)
T ss_dssp E-------------SSTTCEEEEEETTTT
T ss_pred C-------------CcCCceEEEEecccC
Confidence 0 1 2678888899996
No 462
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=89.63 E-value=0.18 Score=53.82 Aligned_cols=25 Identities=48% Similarity=0.562 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
...+++|+|+.|+||||+++.++.-
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 3579999999999999999999863
No 463
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.61 E-value=0.28 Score=50.24 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
-.+++|+|+.|.|||||++.++.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999999985
No 464
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.59 E-value=0.17 Score=53.06 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036584 227 LVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 465
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.59 E-value=0.16 Score=51.81 Aligned_cols=23 Identities=35% Similarity=0.338 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
-.+++|+|+.|+|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999985
No 466
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.58 E-value=0.17 Score=52.28 Aligned_cols=24 Identities=33% Similarity=0.286 Sum_probs=21.8
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
.++|.|.|+.|+||||||..++..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 568999999999999999999973
No 467
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.57 E-value=0.14 Score=50.55 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
-.+++|+|+.|.|||||.+.++.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999986
No 468
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=89.56 E-value=0.56 Score=52.18 Aligned_cols=58 Identities=16% Similarity=0.201 Sum_probs=40.5
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHH-HHHHH
Q 036584 214 LLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIK-DLLLR 276 (919)
Q Consensus 214 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~ 276 (919)
++++.|..-. +-+-++|.|..|+|||+|+.++.+.. +-+.++++-+++....- +++.+
T Consensus 216 rvID~l~Pig-kGqr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~ 274 (588)
T 3mfy_A 216 RVIDTFFPQA-KGGTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEE 274 (588)
T ss_dssp HHHHHHSCEE-TTCEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHH
T ss_pred chhhccCCcc-cCCeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHH
Confidence 5666665422 23578999999999999999998742 23578888888776543 44444
No 469
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.51 E-value=0.17 Score=51.27 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
-.+++|+|+.|.|||||++.++.
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999987
No 470
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.41 E-value=0.28 Score=51.06 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHHc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
...+++|+|+.|.|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 356899999999999999999986
No 471
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.40 E-value=0.21 Score=51.03 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
+..++.+.|.||+||||++..+...
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999863
No 472
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.38 E-value=0.19 Score=51.53 Aligned_cols=23 Identities=39% Similarity=0.439 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
-.+++|+|+.|+|||||++.++.
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999987
No 473
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.36 E-value=0.44 Score=46.87 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
...|+|.|+.|+||||+++.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 474
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.24 E-value=0.28 Score=51.21 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
-.+++|+|+.|.|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 46899999999999999999975
No 475
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.19 E-value=0.19 Score=48.19 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
.+.|.|.|++|+||||||..+..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999987
No 476
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.19 E-value=0.18 Score=49.07 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
.-.|+|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999999874
No 477
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=89.19 E-value=0.42 Score=53.35 Aligned_cols=58 Identities=14% Similarity=0.237 Sum_probs=39.7
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCC-CHHHHHHH
Q 036584 214 LLLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDY-KIKDLLLR 276 (919)
Q Consensus 214 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~ 276 (919)
++++.|..-. +-+-++|.|..|+|||+|+.++.+.. +-+.++++-+++.. ...+++.+
T Consensus 221 rvID~l~Pig-rGqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 221 RVIDTFFPVT-KGGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp HHHHHHSCCB-TTCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHHH
T ss_pred hhhhccCCcc-CCCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHH
Confidence 5666665532 24578999999999999999998742 23568888887663 33344433
No 478
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.18 E-value=0.19 Score=51.32 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
-.+++|+|+.|.|||||++.++.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999986
No 479
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.06 E-value=0.18 Score=50.95 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
-.+++|+|+.|.|||||.+.++.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999986
No 480
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=88.90 E-value=0.26 Score=48.51 Aligned_cols=104 Identities=17% Similarity=0.218 Sum_probs=54.5
Q ss_pred EEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccccc------ccccccCCHHHHHHH
Q 036584 228 VISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTA------LEDLETKTEEDLARS 301 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~------~~~~~~~~~~~~~~~ 301 (919)
.|.+.|.||+||||+|..+..... ...++ +.++.+....+... ...+..+..... .......+.+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~-~~G~~-V~v~d~D~q~~~~~--~al~~gl~~~~~~~~~~~~~~~~e~~l~~~--- 80 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL-RQGVR-VMAGVVETHGRAET--EALLNGLPQQPLLRTEYRGMTLEEMDLDAL--- 80 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH-HTTCC-EEEEECCCTTCHHH--HHHHTTSCBCCCEEEEETTEEEEECCHHHH---
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH-HCCCC-EEEEEeCCCCChhH--HHHhcCccccCcceeecCCcccccccHHHH---
Confidence 478899999999999888887422 22333 55556654433321 112222221100 001112333322
Q ss_pred HHHHhccCceEEEEecccch--------hHHHHHHhhCCCCCCCcEEEEEec
Q 036584 302 LRKSLEAYSYLMVIDDIWHK--------EDWVSLKSAFPENKIGSRVIITTR 345 (919)
Q Consensus 302 l~~~l~~~~~LlVlDdv~~~--------~~~~~l~~~l~~~~~gs~iivTtr 345 (919)
+..++=++|+|++-.. .-|..+...++. |..|+.|+.
T Consensus 81 ----L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~s---gidVitT~N 125 (228)
T 2r8r_A 81 ----LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAA---GIDVYTTVN 125 (228)
T ss_dssp ----HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHT---TCEEEEEEE
T ss_pred ----HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcC---CCCEEEEcc
Confidence 2235679999986421 246666554432 445777765
No 481
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=88.85 E-value=0.36 Score=51.36 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=22.2
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHc
Q 036584 224 QRRLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 224 ~~~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
....+++|+|++|+|||||.+.+..
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999985
No 482
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=88.78 E-value=0.19 Score=51.75 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
-.+++|+|+.|+|||||++.++.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999999986
No 483
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.78 E-value=0.2 Score=50.91 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
..+++|+|+.|.|||||.+.++.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 484
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.74 E-value=0.24 Score=45.93 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHHcc
Q 036584 227 LVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
+-|+|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999999874
No 485
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=88.70 E-value=0.44 Score=47.60 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=26.3
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEE
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWV 262 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 262 (919)
...|.|.|+.|+||||+++.+..... ...+..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeee
Confidence 46899999999999999999987422 2345534443
No 486
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=88.65 E-value=0.31 Score=43.63 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=29.5
Q ss_pred ccceEEeecCCCccccChh-hhcCCCCcEEecCCC
Q 036584 643 IHLKYLGLRNSNIGILPSS-IVKLQRLQTLDFSGD 676 (919)
Q Consensus 643 ~~Lr~L~L~~~~i~~LP~~-l~~L~~L~~L~L~~~ 676 (919)
.+|++|+|++|.|+.+|.. +..+++|++|+|++|
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 3689999999999989874 688999999999988
No 487
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.61 E-value=0.26 Score=47.21 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.4
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999874
No 488
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=88.56 E-value=0.37 Score=51.36 Aligned_cols=23 Identities=43% Similarity=0.492 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHHc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
-.+++|+|+.|+|||||.+.++-
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 45899999999999999999986
No 489
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.54 E-value=0.22 Score=46.23 Aligned_cols=22 Identities=36% Similarity=0.711 Sum_probs=19.9
Q ss_pred EEEEEecCCchHHHHHHHHHcc
Q 036584 228 VISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
-|.|+|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999865
No 490
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=88.53 E-value=0.38 Score=43.03 Aligned_cols=37 Identities=22% Similarity=0.072 Sum_probs=25.4
Q ss_pred CCCcceEEEEccCCCCCCchhhhcCCCCCeEEEeecc
Q 036584 808 LPNLECLSLSVPYPKEDPMPALEMLPNLIILDLHFRC 844 (919)
Q Consensus 808 ~~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~ 844 (919)
+++|+.|+|++|.|+......+..+++|+.|+|.+|.
T Consensus 30 p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 30 PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4567777777777766555666777777777777554
No 491
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.48 E-value=0.62 Score=59.56 Aligned_cols=99 Identities=16% Similarity=0.134 Sum_probs=64.2
Q ss_pred HHHHHHhc-CCCCcEEEEEEecCCchHHHHHHHHHcccCccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccccccc-ccc
Q 036584 214 LLLAKLLD-KEQRRLVISIYGMGGLGKTTLARKLYHNNDVKNKFDYCAWVSVSQDYKIKDLLLRIIKSFNIMTALE-DLE 291 (919)
Q Consensus 214 ~l~~~L~~-~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~-~~~ 291 (919)
.|...|-. +=++-++|-|+|+.|+||||||.++... ....=...+|+.+.+..+..- ++.++.....- -..
T Consensus 1418 ~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~--~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~ 1490 (1706)
T 3cmw_A 1418 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQ 1490 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEEC
T ss_pred HHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHH--HHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeC
Confidence 34444442 2235679999999999999999999863 333335589999988877653 66666533211 112
Q ss_pred cCCHHHHHHHHHHHh-ccCceEEEEeccc
Q 036584 292 TKTEEDLARSLRKSL-EAYSYLMVIDDIW 319 (919)
Q Consensus 292 ~~~~~~~~~~l~~~l-~~~~~LlVlDdv~ 319 (919)
...-++....+...+ .+..-+||+|-|-
T Consensus 1491 p~~~e~~l~~~~~~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1491 PDTGEQALEICDALARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp CSSHHHHHHHHHHHHHHTCCSEEEESCST
T ss_pred CCcHHHHHHHHHHHHHcCCCCEEEEccHH
Confidence 233355566666666 4567799999873
No 492
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=88.47 E-value=0.22 Score=54.29 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=25.6
Q ss_pred HHHHHhcCCCCcEEEEEEecCCchHHHHHHHHHc
Q 036584 215 LLAKLLDKEQRRLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 215 l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
+.+.|........+++|+|+.|+|||||.+.+..
T Consensus 58 i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 58 ISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred hhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 3333333323457999999999999999999987
No 493
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.44 E-value=0.36 Score=45.58 Aligned_cols=25 Identities=40% Similarity=0.511 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHHcc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
+...|+|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567899999999999999999864
No 494
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.41 E-value=0.21 Score=49.90 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHHc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
...+|+|.|+.|+||||+++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 357999999999999999999987
No 495
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=88.33 E-value=0.24 Score=50.82 Aligned_cols=22 Identities=41% Similarity=0.726 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHHcc
Q 036584 228 VISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 228 vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
.++|+|+.|+|||||.+.++.-
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999863
No 496
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.33 E-value=0.23 Score=46.79 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHcc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
.--|+|+|.+|+|||||...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346899999999999999999864
No 497
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=88.24 E-value=0.24 Score=46.79 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHHcc
Q 036584 227 LVISIYGMGGLGKTTLARKLYHN 249 (919)
Q Consensus 227 ~vv~I~G~~GiGKTtLa~~v~~~ 249 (919)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999874
No 498
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.20 E-value=0.25 Score=49.61 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHHc
Q 036584 225 RRLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 225 ~~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
...+|+|.|+.|+||||+++.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
No 499
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=88.15 E-value=0.42 Score=50.94 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.1
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHc
Q 036584 224 QRRLVISIYGMGGLGKTTLARKLYH 248 (919)
Q Consensus 224 ~~~~vv~I~G~~GiGKTtLa~~v~~ 248 (919)
.+..+|+|+|.+|+|||||+..+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3468999999999999999999875
No 500
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=88.14 E-value=2.6 Score=50.87 Aligned_cols=123 Identities=14% Similarity=0.166 Sum_probs=63.4
Q ss_pred cEEEEEEecCCchHHHHHHHHHcccCcc-----CCCCEEEEEEeCCC-------CCHH-----------HHHHHHHHHhc
Q 036584 226 RLVISIYGMGGLGKTTLARKLYHNNDVK-----NKFDYCAWVSVSQD-------YKIK-----------DLLLRIIKSFN 282 (919)
Q Consensus 226 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~-----~~f~~~~wv~~~~~-------~~~~-----------~~~~~il~~l~ 282 (919)
..+++|+|+.|.|||||++.+..- .+. ... .+.+ +.+. .+.. ....++++.++
T Consensus 461 Ge~v~LiGpNGsGKSTLLk~LagG-~i~g~~~~~~~-~~~~--v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lg 536 (986)
T 2iw3_A 461 ARRYGICGPNGCGKSTLMRAIANG-QVDGFPTQEEC-RTVY--VEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFG 536 (986)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHT-CSTTCCCTTTS-CEEE--TTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC-CcCCCccccce-eEEE--EcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcC
Confidence 358999999999999999999841 111 111 1222 2221 1222 22344455554
Q ss_pred cccc--ccccccCCHHHHHH-HHHHHhccCceEEEEecccc---hhHHHHHHhhCCCCCCCcEEEEEecchhhhhhcC
Q 036584 283 IMTA--LEDLETKTEEDLAR-SLRKSLEAYSYLMVIDDIWH---KEDWVSLKSAFPENKIGSRVIITTRIKDVAERSD 354 (919)
Q Consensus 283 ~~~~--~~~~~~~~~~~~~~-~l~~~l~~~~~LlVlDdv~~---~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~ 354 (919)
.... .......+-.+.++ .|.+.+-.++-+|+||.--+ ...-..+...+.. .|..||++|.+........
T Consensus 537 L~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~a 612 (986)
T 2iw3_A 537 FTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVC 612 (986)
T ss_dssp CCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHC
T ss_pred CChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhC
Confidence 3110 00122333333333 34556666788999998532 2222222222222 3666888888776665443
Done!