BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036585
(304 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 20/242 (8%)
Query: 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
G +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S D++L++
Sbjct: 41 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD---DKTLKI 97
Query: 87 LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
+ K + KGH + V + + +SGS D +V +WD + KC L P
Sbjct: 98 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 157
Query: 147 AAA--------------YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT 192
+A YD ++ G + D + VKFS +G+ +L T
Sbjct: 158 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 217
Query: 193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGK 251
++ + + D +G L TY + + A+FS G +++SGS D V+ W++++ K
Sbjct: 218 LDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-K 275
Query: 252 EV 253
E+
Sbjct: 276 EI 277
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 42/227 (18%)
Query: 81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
D+ +++ +D K+ + GH + ++ S + +S S D+T+ +WD + KC L
Sbjct: 50 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 109
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
+ VF F+ L++ + + + +
Sbjct: 110 KGHSN---------YVF--------------------CCNFNPQSNLIVSGSFDESVRIW 140
Query: 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD 260
D G L T P + F+ +G ++S S DG W SG+ + + + D
Sbjct: 141 DVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-D 196
Query: 261 TEPPV--IKWAPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRNR 300
PPV +K++P ++ T + L W D SK L Y G
Sbjct: 197 DNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKN 241
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 20/242 (8%)
Query: 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
G +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S D++L++
Sbjct: 31 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD---DKTLKI 87
Query: 87 LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
+ K + KGH + V + + +SGS D +V +WD + KC L P
Sbjct: 88 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 147
Query: 147 AAA--------------YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT 192
+A YD ++ G + D + VKFS +G+ +L T
Sbjct: 148 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 207
Query: 193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGK 251
++ + + D +G L TY + + A+FS G +++SGS D V+ W++++ K
Sbjct: 208 LDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-K 265
Query: 252 EV 253
E+
Sbjct: 266 EI 267
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 42/227 (18%)
Query: 81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
D+ +++ +D K+ + GH + ++ S + +S S D+T+ +WD + KC L
Sbjct: 40 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 99
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
+ VF F+ L++ + + + +
Sbjct: 100 KGHSN---------YVF--------------------CCNFNPQSNLIVSGSFDESVRIW 130
Query: 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD 260
D G L T P + F+ +G ++S S DG W SG+ + + + D
Sbjct: 131 DVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-D 186
Query: 261 TEPPV--IKWAPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRNR 300
PPV +K++P ++ T + L W D SK L Y G
Sbjct: 187 DNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKN 231
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 20/242 (8%)
Query: 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
G +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S D++L++
Sbjct: 34 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD---DKTLKI 90
Query: 87 LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
+ K + KGH + V + + +SGS D +V +WD + KC L P
Sbjct: 91 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 150
Query: 147 AAA--------------YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT 192
+A YD ++ G + D + VKFS +G+ +L T
Sbjct: 151 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 210
Query: 193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGK 251
++ + + D +G L TY + + A+FS G +++SGS D V+ W++++ K
Sbjct: 211 LDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-K 268
Query: 252 EV 253
E+
Sbjct: 269 EI 270
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 42/227 (18%)
Query: 81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
D+ +++ +D K+ + GH + ++ S + +S S D+T+ +WD + KC L
Sbjct: 43 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 102
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
+ VF F+ L++ + + + +
Sbjct: 103 KGHSN---------YVF--------------------CCNFNPQSNLIVSGSFDESVRIW 133
Query: 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD 260
D G L T P + F+ +G ++S S DG W SG+ + + + D
Sbjct: 134 DVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-D 189
Query: 261 TEPPV--IKWAPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRNR 300
PPV +K++P ++ T + L W D SK L Y G
Sbjct: 190 DNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKN 234
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 20/242 (8%)
Query: 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
G +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S D++L++
Sbjct: 41 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD---DKTLKI 97
Query: 87 LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
+ K + KGH + V + + +SGS D +V +WD + KC L P
Sbjct: 98 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 157
Query: 147 AAA--------------YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT 192
+A YD ++ G + D + VKFS +G+ +L T
Sbjct: 158 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 217
Query: 193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGK 251
++ + + D +G L TY + + A+FS G +++SGS D V+ W++++ K
Sbjct: 218 LDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-K 275
Query: 252 EV 253
E+
Sbjct: 276 EI 277
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 42/227 (18%)
Query: 81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
D+ +++ +D K+ + GH + ++ S + +S S D+T+ +WD + KC L
Sbjct: 50 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 109
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
+ VF F+ L++ + + + +
Sbjct: 110 KGHSN---------YVF--------------------CCNFNPQSNLIVSGSFDESVRIW 140
Query: 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD 260
D G L T P + F+ +G ++S S DG W SG+ + + + D
Sbjct: 141 DVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-D 196
Query: 261 TEPPV--IKWAPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRNR 300
PPV +K++P ++ T + L W D SK L Y G
Sbjct: 197 DNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKN 241
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 20/242 (8%)
Query: 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
G +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S D++L++
Sbjct: 35 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD---DKTLKI 91
Query: 87 LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
+ K + KGH + V + + +SGS D +V +WD + KC L P
Sbjct: 92 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 151
Query: 147 AAA--------------YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT 192
+A YD ++ G + D + VKFS +G+ +L T
Sbjct: 152 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 211
Query: 193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGK 251
++ + + D +G L TY + + A+FS G +++SGS D V+ W++++ K
Sbjct: 212 LDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-K 269
Query: 252 EV 253
E+
Sbjct: 270 EI 271
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 42/227 (18%)
Query: 81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
D+ +++ +D K+ + GH + ++ S + +S S D+T+ +WD + KC L
Sbjct: 44 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 103
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
+ VF F+ L++ + + + +
Sbjct: 104 KGHSN---------YVF--------------------CCNFNPQSNLIVSGSFDESVRIW 134
Query: 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD 260
D G L T P + F+ +G ++S S DG W SG+ + + + D
Sbjct: 135 DVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-D 190
Query: 261 TEPPV--IKWAPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRNR 300
PPV +K++P ++ T + L W D SK L Y G
Sbjct: 191 DNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKN 235
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 20/242 (8%)
Query: 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
G +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S D++L++
Sbjct: 52 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD---DKTLKI 108
Query: 87 LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
+ K + KGH + V + + +SGS D +V +WD + KC L P
Sbjct: 109 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 168
Query: 147 AAA--------------YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT 192
+A YD ++ G + D + VKFS +G+ +L T
Sbjct: 169 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 228
Query: 193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGK 251
++ + + D +G L TY + + A+FS G +++SGS D V+ W++++ K
Sbjct: 229 LDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-K 286
Query: 252 EV 253
E+
Sbjct: 287 EI 288
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 87/225 (38%), Gaps = 42/225 (18%)
Query: 81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
D+ +++ +D K+ + GH + ++ S + +S S D+T+ +WD + KC L
Sbjct: 61 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 120
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
+ VF F+ L++ + + + +
Sbjct: 121 KGHSN---------YVF--------------------CCNFNPQSNLIVSGSFDESVRIW 151
Query: 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD 260
D G L T P + F+ +G ++S S DG W SG+ + + + D
Sbjct: 152 DVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-D 207
Query: 261 TEPPV--IKWAPGS--LMFVTGSSELSFWIPDLSK---LGAYVGR 298
PPV +K++P ++ T + L W D SK L Y G
Sbjct: 208 DNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGH 250
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 20/242 (8%)
Query: 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
G +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S D++L++
Sbjct: 59 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD---DKTLKI 115
Query: 87 LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
+ K + KGH + V + + +SGS D +V +WD + KC L P
Sbjct: 116 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 175
Query: 147 AAA--------------YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT 192
+A YD ++ G + D + VKFS +G+ +L T
Sbjct: 176 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 235
Query: 193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGK 251
++ + + D +G L TY + + A+FS G +++SGS D V+ W++++ K
Sbjct: 236 LDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-K 293
Query: 252 EV 253
E+
Sbjct: 294 EI 295
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 42/227 (18%)
Query: 81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
D+ +++ +D K+ + GH + ++ S + +S S D+T+ +WD + KC L
Sbjct: 68 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 127
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
+ VF F+ L++ + + + +
Sbjct: 128 KGHSN---------YVF--------------------CCNFNPQSNLIVSGSFDESVRIW 158
Query: 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD 260
D G L T P + F+ +G ++S S DG W SG+ + + + D
Sbjct: 159 DVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-D 214
Query: 261 TEPPV--IKWAPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRNR 300
PPV +K++P ++ T + L W D SK L Y G
Sbjct: 215 DNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKN 259
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 20/242 (8%)
Query: 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
G +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S D++L++
Sbjct: 36 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD---DKTLKI 92
Query: 87 LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
+ K + KGH + V + + +SGS D +V +WD + KC L P
Sbjct: 93 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 152
Query: 147 AAA--------------YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT 192
+A YD ++ G + D + VKFS +G+ +L T
Sbjct: 153 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 212
Query: 193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGK 251
++ + + D +G L TY + + A+FS G +++SGS D V+ W++++ K
Sbjct: 213 LDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-K 270
Query: 252 EV 253
E+
Sbjct: 271 EI 272
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 42/227 (18%)
Query: 81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
D+ +++ +D K+ + GH + ++ S + +S S D+T+ +WD + KC L
Sbjct: 45 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 104
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
+ VF F+ L++ + + + +
Sbjct: 105 KGHSN---------YVF--------------------CCNFNPQSNLIVSGSFDESVRIW 135
Query: 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD 260
D G L T P + F+ +G ++S S DG W SG+ + + + D
Sbjct: 136 DVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-D 191
Query: 261 TEPPV--IKWAPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRNR 300
PPV +K++P ++ T + L W D SK L Y G
Sbjct: 192 DNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKN 236
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 20/242 (8%)
Query: 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
G +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S D++L++
Sbjct: 35 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD---DKTLKI 91
Query: 87 LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
+ K + KGH + V + + +SGS D +V +WD + KC L P
Sbjct: 92 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 151
Query: 147 AAA--------------YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT 192
+A YD ++ G + D + VKFS +G+ +L T
Sbjct: 152 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 211
Query: 193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGK 251
++ + + D +G L TY + + A+FS G +++SGS D V+ W++++ K
Sbjct: 212 LDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-K 269
Query: 252 EV 253
E+
Sbjct: 270 EI 271
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 42/227 (18%)
Query: 81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
D+ +++ +D K+ + GH + ++ S + +S S D+T+ +WD + KC L
Sbjct: 44 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 103
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
+ VF F+ L++ + + + +
Sbjct: 104 KGHSN---------YVF--------------------CCNFNPQSNLIVSGSFDESVRIW 134
Query: 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD 260
D G L T P + F+ +G ++S S DG W SG+ + + + D
Sbjct: 135 DVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-D 190
Query: 261 TEPPV--IKWAPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRNR 300
PPV +K++P ++ T + L W D SK L Y G
Sbjct: 191 DNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKN 235
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 20/242 (8%)
Query: 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
G +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S D++L++
Sbjct: 40 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD---DKTLKI 96
Query: 87 LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
+ K + KGH + V + + +SGS D +V +WD + KC L P
Sbjct: 97 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 156
Query: 147 AAA--------------YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT 192
+A YD ++ G + D + VKFS +G+ +L T
Sbjct: 157 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 216
Query: 193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGK 251
++ + + D +G L TY + + A+FS G +++SGS D V+ W++++ K
Sbjct: 217 LDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-K 274
Query: 252 EV 253
E+
Sbjct: 275 EI 276
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 42/227 (18%)
Query: 81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
D+ +++ +D K+ + GH + ++ S + +S S D+T+ +WD + KC L
Sbjct: 49 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 108
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
+ VF F+ L++ + + + +
Sbjct: 109 KGHSN---------YVF--------------------CCNFNPQSNLIVSGSFDESVRIW 139
Query: 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD 260
D G L T P + F+ +G ++S S DG W SG+ + + + D
Sbjct: 140 DVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-D 195
Query: 261 TEPPV--IKWAPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRNR 300
PPV +K++P ++ T + L W D SK L Y G
Sbjct: 196 DNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKN 240
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 20/242 (8%)
Query: 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
G +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S D++L++
Sbjct: 41 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD---DKTLKI 97
Query: 87 LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
+ K + KGH + V + + +SGS D +V +WD + KC L P
Sbjct: 98 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 157
Query: 147 AAA--------------YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT 192
+A YD ++ G + D + VKFS +G+ +L T
Sbjct: 158 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 217
Query: 193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGK 251
++ + + D +G L TY + + A+FS G +++SGS D V+ W++++ K
Sbjct: 218 LDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-K 275
Query: 252 EV 253
E+
Sbjct: 276 EI 277
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 42/227 (18%)
Query: 81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
D+ +++ +D K+ + GH + ++ S + +S S D+T+ +WD + KC L
Sbjct: 50 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 109
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
+ VF F+ L++ + + + +
Sbjct: 110 KGHSN---------YVF--------------------CCNFNPQSNLIVSGSFDESVRIW 140
Query: 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD 260
D G L T P + F+ +G ++S S DG W SG+ + + + D
Sbjct: 141 DVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-D 196
Query: 261 TEPPV--IKWAPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRNR 300
PPV +K++P ++ T + L W D SK L Y G
Sbjct: 197 DNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKN 241
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 20/242 (8%)
Query: 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
G +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S D++L++
Sbjct: 57 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD---DKTLKI 113
Query: 87 LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
+ K + KGH + V + + +SGS D +V +WD + KC L P
Sbjct: 114 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 173
Query: 147 AAA--------------YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT 192
+A YD ++ G + D + VKFS +G+ +L T
Sbjct: 174 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 233
Query: 193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGK 251
++ + + D +G L TY + + A+FS G +++SGS D V+ W++++ K
Sbjct: 234 LDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-K 291
Query: 252 EV 253
E+
Sbjct: 292 EI 293
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 42/227 (18%)
Query: 81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
D+ +++ +D K+ + GH + ++ S + +S S D+T+ +WD + KC L
Sbjct: 66 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 125
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
+ VF F+ L++ + + + +
Sbjct: 126 KGHSN---------YVF--------------------CCNFNPQSNLIVSGSFDESVRIW 156
Query: 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD 260
D G L T P + F+ +G ++S S DG W SG+ + + + D
Sbjct: 157 DVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-D 212
Query: 261 TEPPV--IKWAPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRNR 300
PPV +K++P ++ T + L W D SK L Y G
Sbjct: 213 DNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKN 257
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 20/242 (8%)
Query: 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
G +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S D++L++
Sbjct: 38 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD---DKTLKI 94
Query: 87 LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
+ K + KGH + V + + +SGS D +V +WD + KC L P
Sbjct: 95 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 154
Query: 147 AAA--------------YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT 192
+A YD ++ G + D + VKFS +G+ +L T
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 214
Query: 193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGK 251
++ + + D +G L TY + + A+FS G +++SGS D V+ W++++ K
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-K 272
Query: 252 EV 253
E+
Sbjct: 273 EI 274
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/225 (20%), Positives = 86/225 (38%), Gaps = 38/225 (16%)
Query: 81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
D+ +++ +D K+ + GH + ++ S + +S S D+T+ +WD + KC L
Sbjct: 47 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
+ VF F+ L++ + + + +
Sbjct: 107 KGHSN---------YVF--------------------CCNFNPQSNLIVSGSFDESVRIW 137
Query: 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD 260
D G L T P + F+ +G ++S S DG W SG+ + + + D
Sbjct: 138 DVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-D 193
Query: 261 TEPPV--IKWAPGSLMFVTGSSELSFWIPDLSK---LGAYVGRNR 300
PPV +K++P + + + + + D SK L Y G
Sbjct: 194 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 238
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 111/242 (45%), Gaps = 20/242 (8%)
Query: 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
G +L +S D+ I+++ KTI+ K G+ V ++S ++ +S D++L++
Sbjct: 38 GEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD---DKTLKI 94
Query: 87 LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
+ K + KGH + V + + +SGS D +V +WD + KC L P
Sbjct: 95 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 154
Query: 147 AAA--------------YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT 192
+A YD ++ G + D + VKFS +G+ +L T
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 214
Query: 193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGK 251
++ + + D +G L TY + + A+FS G +++SGS D V+ W++++ K
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-K 272
Query: 252 EV 253
E+
Sbjct: 273 EI 274
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/225 (20%), Positives = 86/225 (38%), Gaps = 38/225 (16%)
Query: 81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
D+ +++ +D K+ + GH + ++ S + +S S D+T+ +WD + KC L
Sbjct: 47 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
+ VF F+ L++ + + + +
Sbjct: 107 KGHSN---------YVF--------------------CCNFNPQSNLIVSGSFDESVRIW 137
Query: 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD 260
D G L T P + F+ +G ++S S DG W SG+ + + + D
Sbjct: 138 DVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-D 193
Query: 261 TEPPV--IKWAPGSLMFVTGSSELSFWIPDLSK---LGAYVGRNR 300
PPV +K++P + + + + + D SK L Y G
Sbjct: 194 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 238
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 20/242 (8%)
Query: 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
G +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S D++L++
Sbjct: 38 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD---DKTLKI 94
Query: 87 LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
+ K + KGH + V + + +SGS D +V +WD + KC L P
Sbjct: 95 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 154
Query: 147 AAA--------------YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT 192
+A YD ++ G + D + VKFS +G+ +L T
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 214
Query: 193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGK 251
++ + + D +G L TY + + A+FS G +++SGS D V+ W++++ K
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-K 272
Query: 252 EV 253
E+
Sbjct: 273 EI 274
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/225 (20%), Positives = 86/225 (38%), Gaps = 38/225 (16%)
Query: 81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
D+ +++ +D K+ + GH + ++ S + +S S D+T+ +WD + KC L
Sbjct: 47 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
+ VF F+ L++ + + + +
Sbjct: 107 KGHSN---------YVF--------------------CCNFNPQSNLIVSGSFDESVRIW 137
Query: 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD 260
D G L T P + F+ +G ++S S DG W SG+ + + + D
Sbjct: 138 DVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-D 193
Query: 261 TEPPV--IKWAPGSLMFVTGSSELSFWIPDLSK---LGAYVGRNR 300
PPV +K++P + + + + + D SK L Y G
Sbjct: 194 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 238
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 111/242 (45%), Gaps = 20/242 (8%)
Query: 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
G +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S D++L++
Sbjct: 38 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD---DKTLKI 94
Query: 87 LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
+ K + KGH + V + + +SGS D +V +WD + C L P
Sbjct: 95 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDP 154
Query: 147 AAA--------------YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT 192
+A YD ++ G + D + VKFS +G+ +L T
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 214
Query: 193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGK 251
++ + + D +G L TY + + A+FS G +++SGS D V+ W++++ K
Sbjct: 215 LDNDLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQT-K 272
Query: 252 EV 253
E+
Sbjct: 273 EI 274
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 88/227 (38%), Gaps = 42/227 (18%)
Query: 81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
D+ +++ +D K+ + GH + ++ S + +S S D+T+ +WD + KC L
Sbjct: 47 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
+ VF F+ L++ + + + +
Sbjct: 107 KGHSN---------YVF--------------------CCNFNPQSNLIVSGSFDESVRIW 137
Query: 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD 260
D G L T P + F+ +G ++S S DG W SG+ + + + D
Sbjct: 138 DVKTGMCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-D 193
Query: 261 TEPPV--IKWAPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRNR 300
PPV +K++P ++ T ++L W D SK L Y G
Sbjct: 194 DNPPVSFVKFSPNGKYILAATLDNDLKLW--DYSKGKCLKTYTGHKN 238
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 111/242 (45%), Gaps = 20/242 (8%)
Query: 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
G +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S D++L++
Sbjct: 38 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD---DKTLKI 94
Query: 87 LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
+ K + KGH + V + + +SGS D +V +WD + C L P
Sbjct: 95 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDP 154
Query: 147 AAA--------------YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT 192
+A YD ++ G + D + VKFS +G+ +L T
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 214
Query: 193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGK 251
++ + + D +G L TY + + A+FS G +++SGS D V+ W++++ K
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQT-K 272
Query: 252 EV 253
E+
Sbjct: 273 EI 274
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 42/227 (18%)
Query: 81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
D+ +++ +D K+ + GH + ++ S + +S S D+T+ +WD + KC L
Sbjct: 47 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
+ VF F+ L++ + + + +
Sbjct: 107 KGHSN---------YVF--------------------CCNFNPQSNLIVSGSFDESVRIW 137
Query: 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD 260
D G L T P + F+ +G ++S S DG W SG+ + + + D
Sbjct: 138 DVKTGMCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-D 193
Query: 261 TEPPV--IKWAPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRNR 300
PPV +K++P ++ T + L W D SK L Y G
Sbjct: 194 DNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKN 238
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 96/220 (43%), Gaps = 33/220 (15%)
Query: 28 IYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYS-SKNGWDESLRL 86
+ ++TAS D + L+DV + L++ + +G D++C P+ + G D+ +
Sbjct: 167 MQILTASGDGTCALWDVESGQLLQSFHG--HGADVLCLDLAPSETGNTFVSGGCDKKAMV 224
Query: 87 LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
+ + + F+ H V + S D F SGS D T L+D RA+ R
Sbjct: 225 WDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD----------RE 274
Query: 147 AAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT 206
A Y + ++FG A+ V FS GRL+ + I+V D +G+
Sbjct: 275 VAIYSKESIIFG-----------------ASSVDFSLSGRLLFAGYNDYTINVWDVLKGS 317
Query: 207 LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWS 246
+S +R STL SP+G SGS D ++ W+
Sbjct: 318 RVSIL-FGHENRVSTLRV--SPDGTAFCSGSWDHTLRVWA 354
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 87/216 (40%), Gaps = 20/216 (9%)
Query: 93 KYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEK--------CQGLLRVQG 144
K R KGH ++V+ + C K +S S D V++WD C ++
Sbjct: 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAY 114
Query: 145 RPAAA------YDDQGLVF-----GYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM 193
P+ D++ V+ E SV + + F+N +L +
Sbjct: 115 APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASG 174
Query: 194 EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEV 253
+G + D G LL +++ L+ + S G +SG D W +RSG+ V
Sbjct: 175 DGTCALWDVESGQLLQSFHGHGADV-LCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCV 233
Query: 254 ASWMSFDTEPPVIKWAPGSLMFVTGSSELSFWIPDL 289
++ + +++ +++ P F +GS + + + DL
Sbjct: 234 QAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL 269
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 87/222 (39%), Gaps = 45/222 (20%)
Query: 65 FTSHPTTVIYSSKNG----WD-ESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSK--DCF 117
FT+ ++ +S +G WD ES +LL + F GH V+ L L S+ + F
Sbjct: 162 FTNSDMQILTASGDGTCALWDVESGQLL--------QSFHGHGADVLCLDLAPSETGNTF 213
Query: 118 ISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDAN 177
+SG D+ ++WD R+ +C VQ D + + Y G D F+ G D +
Sbjct: 214 VSGGCDKKAMVWDMRSGQC-----VQAFETHESDVNSVRY-YPSG--DAFASGSDDATCR 265
Query: 178 VVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS 237
+ D R + + + E I S FS G + +G
Sbjct: 266 LYDLRAD-REVAIYSKESIIFGASS---------------------VDFSLSGRLLFAGY 303
Query: 238 GDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGS 279
D +++ W V G V+ + ++ +P F +GS
Sbjct: 304 NDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGS 345
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Query: 27 GIYLVTASDDESIRLYDVTA--ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 84
G + SDD + RLYD+ A + + S +G V F S ++++ N D ++
Sbjct: 252 GDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDF-SLSGRLLFAGYN--DYTI 308
Query: 85 RLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLW 129
+ + GH +RV L + F SGS D T+ +W
Sbjct: 309 NVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 108/239 (45%), Gaps = 23/239 (9%)
Query: 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
G + +ASDD++++L++ L+T+ V V F+ T+ +S D++++L
Sbjct: 110 GQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDGQTIASASD---DKTVKL 165
Query: 87 LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL----RV 142
+ + + + GH V ++ S S D+TV LW++ + Q L V
Sbjct: 166 WN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV 224
Query: 143 QGRP--------AAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTME 194
+G A+A DD+ + G L + ++ G S N V F DG+ + + +
Sbjct: 225 RGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVNGVAFRPDGQTIASASDD 283
Query: 195 GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEV 253
+ + + G LL T +S +FSP+G + S S D +V W+ R+G+ +
Sbjct: 284 KTVKLWNR-NGQLLQTLTGHS---SSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHL 337
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 103/232 (44%), Gaps = 22/232 (9%)
Query: 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
G + +ASDD++++L++ L+T+ V V F+ T+ +S D++++L
Sbjct: 356 GQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVRGVAFSPDGQTIASASD---DKTVKL 411
Query: 87 LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL----RV 142
+ + + + GH V ++ S S D+TV LW++ + Q L V
Sbjct: 412 WN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV 470
Query: 143 QGRP--------AAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTME 194
+G A+A DD+ + G L + ++ G S V FS DG+ + + +
Sbjct: 471 RGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVRGVAFSPDGQTIASASDD 529
Query: 195 GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWS 246
+ + + G LL T +S +FSP+G + S S D +V W+
Sbjct: 530 KTVKLWNR-NGQLLQTLTGHS---SSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 107/237 (45%), Gaps = 23/237 (9%)
Query: 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
G + +ASDD++++L++ L+T+ V V F+ T+ +S D++++L
Sbjct: 151 GQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDGQTIASASD---DKTVKL 206
Query: 87 LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL----RV 142
+ + + + GH V ++ S S D+TV LW++ + Q L V
Sbjct: 207 WN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV 265
Query: 143 QG---RP-----AAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTME 194
G RP A+A DD+ + G L + ++ G S V FS DG+ + + +
Sbjct: 266 NGVAFRPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDGQTIASASDD 324
Query: 195 GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGK 251
+ + + G L T +S +FSP+G + S S D +V W+ R+G+
Sbjct: 325 KTVKLWNR-NGQHLQTLTGHS---SSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQ 376
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 106/237 (44%), Gaps = 23/237 (9%)
Query: 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
G + +ASDD++++L++ L+T+ V V F+ T+ +S D++++L
Sbjct: 28 GQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDGQTIASASD---DKTVKL 83
Query: 87 LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR----- 141
+ + + + GH V ++ S S D+TV LW++ + Q L
Sbjct: 84 WN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV 142
Query: 142 --VQGRP-----AAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTME 194
V P A+A DD+ + G L + ++ G S V FS DG+ + + +
Sbjct: 143 WGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDGQTIASASDD 201
Query: 195 GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGK 251
+ + + G LL T +S +FSP+G + S S D +V W+ R+G+
Sbjct: 202 KTVKLWNR-NGQLLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQ 253
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 66/156 (42%), Gaps = 33/156 (21%)
Query: 95 SRYFKGHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQ 153
S + GH V+ LS+ S + + FISGS D TV LWD LR+ R Y
Sbjct: 198 SEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWD---------LRITSRAVRTY--- 245
Query: 154 GLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV 213
G+E GDI N VKF DG+ + +G + D G L YN
Sbjct: 246 ---HGHE----------GDI---NSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNR 289
Query: 214 KPVSRNSTL----EASFSPEGMFVISGSGDGSVHAW 245
+P ++ L +FS G + +G +G + W
Sbjct: 290 EPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVW 325
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 90/237 (37%), Gaps = 47/237 (19%)
Query: 30 LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTV--IYSSKNG-------W 80
+V+AS D+SI L+ +T + K YGV T H V + S +G W
Sbjct: 398 IVSASRDKSIILWKLTK-------DDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSW 450
Query: 81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
D LRL L +R F GH V+ ++ +S S DRT+ LW+ E C+ +
Sbjct: 451 DGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE-CKYTI 509
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLD--IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIH 198
G + D + L I S D VK N L +T+ GH
Sbjct: 510 SEGGE---GHRDWVSCVRFSPNTLQPTIVSASWD----KTVKVWNLSNCKLRSTLAGHTG 562
Query: 199 VLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVAS 255
+ + + SP+G SG DG V W + GK++ S
Sbjct: 563 YVSTV---------------------AVSPDGSLCASGGKDGVVLLWDLAEGKKLYS 598
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 94/240 (39%), Gaps = 57/240 (23%)
Query: 30 LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTV---------IYSSKNGW 80
L++AS D+++ + +T + +K+GV + F H V Y+ W
Sbjct: 33 LLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 85
Query: 81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
D++LRL + + + F GH V+ + + ISGS D+T+ +W + + LL
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLL 145
Query: 141 -------RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM 193
+V+ P DD + I S G D +VK N + +
Sbjct: 146 GHNDWVSQVRVVPNEKADDDSVT---------IISAGND----KMVKAWNLNQFQIEADF 192
Query: 194 EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEV 253
GH S +TL AS P+G + S DG + W++ + K +
Sbjct: 193 IGH-------------------NSNINTLTAS--PDGTLIASAGKDGEIMLWNLAAKKAM 231
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 94/240 (39%), Gaps = 57/240 (23%)
Query: 30 LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTV---------IYSSKNGW 80
L++AS D+++ + +T + +K+GV + F H V Y+ W
Sbjct: 27 LLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 79
Query: 81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
D++LRL + + + F GH V+ + + ISGS D+T+ +W + + LL
Sbjct: 80 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLL 139
Query: 141 -------RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM 193
+V+ P DD + I S G D +VK N + +
Sbjct: 140 GHNDWVSQVRVVPNEKADDDSVT---------IISAGND----KMVKAWNLNQFQIEADF 186
Query: 194 EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEV 253
GH S +TL AS P+G + S DG + W++ + K +
Sbjct: 187 IGH-------------------NSNINTLTAS--PDGTLIASAGKDGEIMLWNLAAKKAM 225
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 94/240 (39%), Gaps = 57/240 (23%)
Query: 30 LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTV---------IYSSKNGW 80
L++AS D+++ + +T + +K+GV + F H V Y+ W
Sbjct: 33 LLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 85
Query: 81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
D++LRL + + + F GH V+ + + ISGS D+T+ +W + + LL
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLL 145
Query: 141 -------RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM 193
+V+ P DD + I S G D +VK N + +
Sbjct: 146 GHNDWVSQVRVVPNEKADDDSVT---------IISAGND----KMVKAWNLNQFQIEADF 192
Query: 194 EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEV 253
GH S +TL AS P+G + S DG + W++ + K +
Sbjct: 193 IGH-------------------NSNINTLTAS--PDGTLIASAGKDGEIMLWNLAAKKAM 231
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 94/240 (39%), Gaps = 57/240 (23%)
Query: 30 LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTV---------IYSSKNGW 80
L++AS D+++ + +T + +K+GV + F H V Y+ W
Sbjct: 33 LLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 85
Query: 81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
D++LRL + + + F GH V+ + + ISGS D+T+ +W + + LL
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLL 145
Query: 141 -------RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM 193
+V+ P DD + I S G D +VK N + +
Sbjct: 146 GHNDWVSQVRVVPNEKADDDSVT---------IISAGND----KMVKAWNLNQFQIEADF 192
Query: 194 EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEV 253
GH S +TL AS P+G + S DG + W++ + K +
Sbjct: 193 IGH-------------------NSNINTLTAS--PDGTLIASAGKDGEIMLWNLAAKKAM 231
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 94/240 (39%), Gaps = 57/240 (23%)
Query: 30 LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTV---------IYSSKNGW 80
L++AS D+++ + +T + +K+GV + F H V Y+ W
Sbjct: 33 LLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 85
Query: 81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
D++LRL + + + F GH V+ + + ISGS D+T+ +W + + LL
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLL 145
Query: 141 -------RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM 193
+V+ P DD + I S G D +VK N + +
Sbjct: 146 GHNDWVSQVRVVPNEKADDDSVT---------IISAGND----KMVKAWNLNQFQIEADF 192
Query: 194 EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEV 253
GH S +TL AS P+G + S DG + W++ + K +
Sbjct: 193 IGH-------------------NSNINTLTAS--PDGTLIASAGKDGEIMLWNLAAKKAM 231
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 70/176 (39%), Gaps = 33/176 (18%)
Query: 81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
D +R+ + + K +GH + L S D +SGS DRTV +WD R +C
Sbjct: 144 DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS--- 200
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
L E G + G DG+ + +++ + V
Sbjct: 201 --------------LTLSIEDGVTTVAVSPG------------DGKYIAAGSLDRAVRVW 234
Query: 201 DSFRGTLLSTYNVKPVS----RNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKE 252
DS G L+ + + S ++S F+ +G V+SGS D SV W++++
Sbjct: 235 DSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 290
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 90/199 (45%), Gaps = 31/199 (15%)
Query: 8 REDKVSLELS-EEILQSMEV----GIYLVTASDDESIRLYDVTAATCLKTINSK------ 56
R + SL LS E+ + ++ V G Y+ S D ++R++D ++ ++S+
Sbjct: 195 RTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTG 254
Query: 57 -KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD--NKYSRY----------FKGHHD 103
K V V FT +V+ S D S++L +L + NK + GH D
Sbjct: 255 HKDSVYSVVFTRDGQSVVSGS---LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD 311
Query: 104 RVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGP 163
V+ ++ + + +SGS DR VL WD+++ LL +QG + + G GP
Sbjct: 312 FVLSVATTQNDEYILSGSKDRGVLFWDKKS--GNPLLMLQGHRNSVI-SVAVANGSSLGP 368
Query: 164 -LDIFSVGGDISDANVVKF 181
++F+ G A + K+
Sbjct: 369 EYNVFATGSGDCKARIWKY 387
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 16/126 (12%)
Query: 179 VKFSNDGRLMLLTTMEGHIHVLDSFRGTLL------STYNVKPVSRNSTLEAS------- 225
VKFSNDG L T V G+L+ S N P + N++ S
Sbjct: 70 VKFSNDGE-YLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRS 128
Query: 226 --FSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSELS 283
FSP+G F+ +G+ D + W + + K V + + + + P V+GS + +
Sbjct: 129 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT 188
Query: 284 FWIPDL 289
I DL
Sbjct: 189 VRIWDL 194
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 226 FSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSS 280
+ P G ++SGSGD +V W +R+G + + +S + + +PG ++ S
Sbjct: 173 YFPSGDKLVSGSGDRTVRIWDLRTG-QCSLTLSIEDGVTTVAVSPGDGKYIAAGS 226
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 111/274 (40%), Gaps = 23/274 (8%)
Query: 30 LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 89
+V+AS+D +I+++D +T+ V + F H ++ S D +++L
Sbjct: 123 MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF-DHSGKLLASCSA--DMTIKLWDF 179
Query: 90 HDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAA 149
+ R GH V +S+ + D +S S D+T+ +W+ + C
Sbjct: 180 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF------TGH 233
Query: 150 YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS 209
+ +V + G L I S D + V + + + L H HV++ S
Sbjct: 234 REWVRMVRPNQDGTL-IASCSNDQTVRVWVVATKECKAEL----REHRHVVECISWAPES 288
Query: 210 TYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWA 269
+Y+ + S + S P G F++SGS D ++ W V +G + + + D W
Sbjct: 289 SYSSISEATGSETKKSGKP-GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN------WV 341
Query: 270 PGSLMFVTGSSELSFWIPDLSKLGAYVGRNRGCM 303
G L G LS D L + +N+ CM
Sbjct: 342 RGVLFHSGGKFILS--CADDKTLRVWDYKNKRCM 373
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 98/254 (38%), Gaps = 37/254 (14%)
Query: 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
G L + S D +I+L+D C++T++ + V V + ++ +S+ D+++++
Sbjct: 162 GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR---DKTIKM 218
Query: 87 LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR----- 141
+ + F GH + V ++ S S D+TV +W ++C+ LR
Sbjct: 219 WEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV 278
Query: 142 ---VQGRPAAAYDDQGLVFGYE---KGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEG 195
+ P ++Y G E G F + G S +K + M L T+ G
Sbjct: 279 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSG--SRDKTIKMWDVSTGMCLMTLVG 336
Query: 196 HIH-------------VLDSFRGTLLSTYNVKPVSRNSTLEA--------SFSPEGMFVI 234
H + +L L ++ K TL A F +V+
Sbjct: 337 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV 396
Query: 235 SGSGDGSVHAWSVR 248
+GS D +V W R
Sbjct: 397 TGSVDQTVKVWECR 410
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 12 VSLELSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTT 71
+S E +S + G +L++ S D++I+++DV+ CL T+ V V F S
Sbjct: 293 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKF 352
Query: 72 VIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQ 131
++ + D++LR+ + + + H V L + ++GS+D+TV +W+
Sbjct: 353 ILSCAD---DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409
Query: 132 R 132
R
Sbjct: 410 R 410
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 97/246 (39%), Gaps = 28/246 (11%)
Query: 30 LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 89
+++ S D ++++++ C+ T+ V C H V+ S+ D +LR+ +
Sbjct: 172 IISGSTDRTLKVWNAETGECIHTLYGHTSTVR--CMHLHEKRVVSGSR---DATLRVWDI 226
Query: 90 HDNKYSRYFKGHHDRVVLLSLCSSKDC--FISGSLDRTVLLWDQRAEKCQGLLRVQGRPA 147
+ GH V C D +SG+ D V +WD E C L +QG
Sbjct: 227 ETGQCLHVLMGH----VAAVRCVQYDGRRVVSGAYDFMVKVWDPETETC--LHTLQGHTN 280
Query: 148 AAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL 207
Y Q G LD D+ N + + G L + ME ++L S G
Sbjct: 281 RVYSLQFDGIHVVSGSLDTSIRVWDVETGNCI-HTLTGHQSLTSGMELKDNILVS--GNA 337
Query: 208 LSTYNVKPVSRNSTLEASFSPEGM------------FVISGSGDGSVHAWSVRSGKEVAS 255
ST + + L+ P FVI+ S DG+V W +++G+ + +
Sbjct: 338 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRN 397
Query: 256 WMSFDT 261
++ ++
Sbjct: 398 LVTLES 403
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/236 (20%), Positives = 103/236 (43%), Gaps = 25/236 (10%)
Query: 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
G +V+ SDD +++++ CL+T+ GV ++S I S + D +L++
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMRDNIIISGST-DRTLKV 183
Query: 87 LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQG 144
+ + GH V + L + +SGS D T+ +WD +C +L V
Sbjct: 184 WNAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDIETGQCLHVLMGHVAA 241
Query: 145 RPAAAYDDQGLVFGYEKGPLDIF---------SVGGDISDANVVKFSNDGRLMLLTTMEG 195
YD + +V G + ++ ++ G + ++F DG ++ +++
Sbjct: 242 VRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDT 299
Query: 196 HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGK 251
I V D G + T ++ + +L + + ++SG+ D +V W +++G+
Sbjct: 300 SIRVWDVETGNCIHT-----LTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ 350
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 16/110 (14%)
Query: 27 GIYLVTASDDESIRLYDVTAATCLKTI---NSKKYGVDLVCFTSHPTTVIYSSKNGWDES 83
GI++V+ S D SIR++DV C+ T+ S G++L I S N D +
Sbjct: 289 GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL-------KDNILVSGNA-DST 340
Query: 84 LRLLSLHDNKYSRYFKG---HHDRVVLLSLCSSKDCFISGSLDRTVLLWD 130
+++ + + + +G H V L +K+ I+ S D TV LWD
Sbjct: 341 VKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWD 388
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 78/204 (38%), Gaps = 49/204 (24%)
Query: 93 KYSRYFKGHHDRVV-LLSLCSSKDCFISGSLDRTVLLWDQRAEKC--------QGLLRVQ 143
K + KGH D V+ L C ++ +SGS D T+ +W KC G+ Q
Sbjct: 109 KSPKVLKGHDDHVITCLQFCGNR--IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ 166
Query: 144 GRP----AAAYDDQGLVFGYEKGPLDIFSVGGDIS--------DANVVKFSNDGRLML-- 189
R + + D V+ E G I ++ G S + VV S D L +
Sbjct: 167 MRDNIIISGSTDRTLKVWNAETGEC-IHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWD 225
Query: 190 ------LTTMEGHI-----------HVLDSFRGTLLSTYNVKPVSRNSTLEA------SF 226
L + GH+ V+ ++ ++ + + TL+ S
Sbjct: 226 IETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL 285
Query: 227 SPEGMFVISGSGDGSVHAWSVRSG 250
+G+ V+SGS D S+ W V +G
Sbjct: 286 QFDGIHVVSGSLDTSIRVWDVETG 309
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 88/233 (37%), Gaps = 45/233 (19%)
Query: 30 LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP---TTVIYSS------KNGW 80
+++AS D++I ++ +T + YG+ H + V+ SS W
Sbjct: 54 ILSASRDKTIIMWKLTR-------DETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW 106
Query: 81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
D +LRL L +R F GH V+ ++ S +SGS D+T+ LW+ C+
Sbjct: 107 DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG-VCK--Y 163
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
VQ + + P+ I S G D +VK N L T GH L
Sbjct: 164 TVQDESHSEWVSCVRFSPNSSNPI-IVSCGWD----KLVKVWNLANCKLKTNHIGHTGYL 218
Query: 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEV 253
++ + SP+G SG DG W + GK +
Sbjct: 219 NT---------------------VTVSPDGSLCASGGKDGQAMLWDLNEGKHL 250
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 106/249 (42%), Gaps = 33/249 (13%)
Query: 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
G + ++ S D ++RL+D+T T + V V F+S ++ S+ D++++L
Sbjct: 98 GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR---DKTIKL 154
Query: 87 L-SLHDNKYSRYFKGHHDRV--VLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG----- 138
+L KY+ + H + V V S SS +S D+ V +W+ K +
Sbjct: 155 WNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGH 214
Query: 139 ---LLRVQGRP------AAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLML 189
L V P + D Q +++ +G GGDI N + FS + +
Sbjct: 215 TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI--INALCFSPNRYWLC 272
Query: 190 LTT--------MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGS 241
T +EG I ++D + ++ST + + ++L ++S +G + +G D
Sbjct: 273 AATGPSIKIWDLEGKI-IVDELKQEVISTSSKAEPPQCTSL--AWSADGQTLFAGYTDNL 329
Query: 242 VHAWSVRSG 250
V W V G
Sbjct: 330 VRVWQVTIG 338
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 91/238 (38%), Gaps = 57/238 (23%)
Query: 30 LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTV---------IYSSKNGW 80
L++AS D+++ + +T + +K+GV + F H V Y+ W
Sbjct: 33 LLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 85
Query: 81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
D++LRL + + + F GH V + + ISGS D+T+ +W + + LL
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLL 145
Query: 141 -------RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM 193
+V+ P DD + I S G D VK N + +
Sbjct: 146 GHNDWVSQVRVVPNEKADDDSVT---------IISAGND----KXVKAWNLNQFQIEADF 192
Query: 194 EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGK 251
GH S +TL AS P+G + S DG + W++ + K
Sbjct: 193 IGH-------------------NSNINTLTAS--PDGTLIASAGKDGEIXLWNLAAKK 229
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
G Y ++AS D+++RL+DV + K V V + +I S+ D+++++
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSR---DKTIKV 133
Query: 87 LSLHDNKYSRYFKGHHDRVVLLSLCSSKDC------FISGSLDRTVLLWD 130
++ + GH+D V + + ++ IS D+ V W+
Sbjct: 134 WTIKGQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWN 182
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 88/233 (37%), Gaps = 45/233 (19%)
Query: 30 LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP---TTVIYSS------KNGW 80
+++AS D++I ++ +T + YG+ H + V+ SS W
Sbjct: 31 ILSASRDKTIIMWKLTR-------DETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW 83
Query: 81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
D +LRL L +R F GH V+ ++ S +SGS D+T+ LW+ C+
Sbjct: 84 DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV-CK--Y 140
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
VQ + + P+ I S G D +VK N L T GH L
Sbjct: 141 TVQDESHSEWVSCVRFSPNSSNPI-IVSCGWD----KLVKVWNLANCKLKTNHIGHTGYL 195
Query: 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEV 253
++ + SP+G SG DG W + GK +
Sbjct: 196 NT---------------------VTVSPDGSLCASGGKDGQAMLWDLNEGKHL 227
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 106/249 (42%), Gaps = 33/249 (13%)
Query: 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
G + ++ S D ++RL+D+T T + V V F+S ++ S+ D++++L
Sbjct: 75 GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR---DKTIKL 131
Query: 87 L-SLHDNKYSRYFKGHHDRV--VLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG----- 138
+L KY+ + H + V V S SS +S D+ V +W+ K +
Sbjct: 132 WNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGH 191
Query: 139 ---LLRVQGRP------AAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLML 189
L V P + D Q +++ +G GGDI N + FS + +
Sbjct: 192 TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI--INALCFSPNRYWLC 249
Query: 190 LTT--------MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGS 241
T +EG I ++D + ++ST + + ++L ++S +G + +G D
Sbjct: 250 AATGPSIKIWDLEGKI-IVDELKQEVISTSSKAEPPQCTSL--AWSADGQTLFAGYTDNL 306
Query: 242 VHAWSVRSG 250
V W V G
Sbjct: 307 VRVWQVTIG 315
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 20/166 (12%)
Query: 98 FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAY------D 151
+GH VV + + + S SLD + LWD E + + + P A+ D
Sbjct: 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWD--LENGKQIKSIDAGPVDAWTLAFSPD 133
Query: 152 DQGLVFGYEKGPLDIFSVGGDISDANV---------VKFSNDGRLMLLTTMEGHIHVLDS 202
Q L G G ++IF V + ++ + +S DG+ + ++G I++ D
Sbjct: 134 SQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDI 193
Query: 203 FRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVR 248
G LL T + S +FSP+ +++ S DG + + V+
Sbjct: 194 ATGKLLHTLEGHAMPIRSL---TFSPDSQLLVTASDDGYIKIYDVQ 236
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 27/213 (12%)
Query: 92 NKYSRYFK---GHHDRVVLLSLCSSK----DCFISGSLDRTVLLWDQRAEKCQGLLRVQG 144
N+Y FK H D + ++ ++K + ++GSLD V +W R E+ ++G
Sbjct: 19 NQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEG 78
Query: 145 R-------------PAAA---YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLM 188
P AA D ++ E G I S+ DA + FS D + +
Sbjct: 79 HQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGK-QIKSIDAGPVDAWTLAFSPDSQYL 137
Query: 189 LLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVR 248
T G +++ G + + + L ++SP+G ++ SG+ DG ++ + +
Sbjct: 138 ATGTHVGKVNIFGVESGKKEYSLDTRG---KFILSIAYSPDGKYLASGAIDGIINIFDIA 194
Query: 249 SGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE 281
+GK + + + ++P S + VT S +
Sbjct: 195 TGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDD 227
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 61/148 (41%), Gaps = 14/148 (9%)
Query: 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
G YL + + D I ++D+ L T+ + + F+ ++ +S +G+ +++
Sbjct: 176 GKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY---IKI 232
Query: 87 LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
+ + GH V+ ++ C F+S S D++V +WD C
Sbjct: 233 YDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF------ 286
Query: 147 AAAYDDQGLVFG--YEKGPLDIFSVGGD 172
+D Q V+G Y I SVG D
Sbjct: 287 ---FDHQDQVWGVKYNGNGSKIVSVGDD 311
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Query: 29 YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 88
Y+V+AS D +I++++ + ++T+N K G+ C V+ S D ++RL
Sbjct: 268 YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI--ACLQYRDRLVVSGSS---DNTIRLWD 322
Query: 89 LHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWD 130
+ R +GH + V + + + +SG+ D + +WD
Sbjct: 323 IECGACLRVLEGHEELVRCIRFDNKR--IVSGAYDGKIKVWD 362
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 18/148 (12%)
Query: 30 LVTASDDESIRLYDV---TAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
+VT S D SI ++D+ T T + + + V++V F Y D ++++
Sbjct: 226 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK-----YIVSASGDRTIKV 280
Query: 87 LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV-QGR 145
+ ++ R GH + L +SGS D T+ LWD +C LRV +G
Sbjct: 281 WNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDI---ECGACLRVLEGH 335
Query: 146 P----AAAYDDQGLVFGYEKGPLDIFSV 169
+D++ +V G G + ++ +
Sbjct: 336 EELVRCIRFDNKRIVSGAYDGKIKVWDL 363
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 70/184 (38%), Gaps = 23/184 (12%)
Query: 81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRA------- 133
D ++++ + + R GH V+ L + I+GS D TV +WD
Sbjct: 152 DNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTL 209
Query: 134 -EKCQGLLRVQ---GRPAAAYDDQGLVFGYEKGPLDIF---SVGGDISDANVVKFSNDGR 186
C+ +L ++ G D+ + P DI + G + NVV F D +
Sbjct: 210 IHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDK 267
Query: 187 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWS 246
++ + + I V ++ + T N + A V+SGS D ++ W
Sbjct: 268 YIVSASGDRTIKVWNTSTCEFVRTLN-----GHKRGIACLQYRDRLVVSGSSDNTIRLWD 322
Query: 247 VRSG 250
+ G
Sbjct: 323 IECG 326
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 10/107 (9%)
Query: 30 LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 89
+V+ S D +IRL+D+ CL+ + + V + F + ++ + +G + L++
Sbjct: 309 VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KRIVSGAYDGKIKVWDLVAA 366
Query: 90 HDNKYS------RYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWD 130
D + R H RV L + +S S D T+L+WD
Sbjct: 367 LDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ--IVSSSHDDTILIWD 411
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/143 (20%), Positives = 65/143 (45%), Gaps = 19/143 (13%)
Query: 117 FISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAA----YDDQGLVFGYEKGPLDIFSVG-G 171
+SG D T+ +WD+ +C+ +L G + YD++ ++ G + ++ V G
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRIL--TGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTG 203
Query: 172 DISDANV--------VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE 223
++ + + ++F+N +M+ + + I V D T ++ V R +
Sbjct: 204 EMLNTLIHHCEAVLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV 261
Query: 224 ASFSPEGMFVISGSGDGSVHAWS 246
F + +++S SGD ++ W+
Sbjct: 262 VDF--DDKYIVSASGDRTIKVWN 282
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 67/177 (37%), Gaps = 33/177 (18%)
Query: 80 WDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL 139
WD SLRL +L + + F GH V+ ++ +SG D + +W+ + E L
Sbjct: 87 WDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTL 146
Query: 140 LRVQGRPAAAYDD--QGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHI 197
R A+ D + F I S G D N+VK + L+T ++GH
Sbjct: 147 SR------GAHTDWVSCVRFSPSLDAPVIVSGGWD----NLVKVWDLATGRLVTDLKGHT 196
Query: 198 HVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVA 254
+ + S + SP+G S DG W + G+ ++
Sbjct: 197 NYVTSV---------------------TVSPDGSLCASSDKDGVARLWDLTKGEALS 232
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 30 LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT---TVIYSSKNGWDESLRL 86
+V+ D ++R+++V C+ T++ + + C P+ VI S GWD +++
Sbjct: 124 IVSGGRDNALRVWNVKGE-CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSG--GWDNLVKV 180
Query: 87 LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWD 130
L + KGH + V +++ S D LWD
Sbjct: 181 WDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWD 224
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 91/226 (40%), Gaps = 36/226 (15%)
Query: 29 YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 88
+++ SDD IR+++ T K ++ + + + HPT S + D +++L +
Sbjct: 69 WIIVGSDDFRIRVFNYN--TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD-DLTVKLWN 125
Query: 89 LHDN-KYSRYFKGHHDRVVLLSLCSSKD--CFISGSLDRTVLLWDQRAEKCQGLLRVQGR 145
+N + F+GH V+ ++ + KD F SG LDRTV +W L
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAF-NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 146 PAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG 205
Y D Y P + + SD +K + + T+EGH+ + SF
Sbjct: 185 RGVNYVD------YYPLPDKPYMITA--SDDLTIKIWDYQTKSCVATLEGHMSNV-SF-- 233
Query: 206 TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGK 251
A F P +ISGS DG++ W+ + K
Sbjct: 234 ------------------AVFHPTLPIIISGSEDGTLKIWNSSTYK 261
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 91/226 (40%), Gaps = 36/226 (15%)
Query: 29 YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 88
+++ SDD IR+++ T K ++ + + + HPT S + D +++L +
Sbjct: 69 WIIVGSDDFRIRVFNYN--TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD-DLTVKLWN 125
Query: 89 LHDN-KYSRYFKGHHDRVVLLSLCSSKD--CFISGSLDRTVLLWDQRAEKCQGLLRVQGR 145
+N + F+GH V+ ++ + KD F SG LDRTV +W L
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAF-NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 146 PAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG 205
Y D Y P + + SD +K + + T+EGH+ + SF
Sbjct: 185 RGVNYVD------YYPLPDKPYMITA--SDDLTIKIWDYQTKSCVATLEGHMSNV-SF-- 233
Query: 206 TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGK 251
A F P +ISGS DG++ W+ + K
Sbjct: 234 ------------------AVFHPTLPIIISGSEDGTLKIWNSSTYK 261
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 58/177 (32%), Gaps = 30/177 (16%)
Query: 79 GWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG 138
G D++L++ + K H D V+ + S + S D+ V +WD
Sbjct: 634 GADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS------- 686
Query: 139 LLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIH 198
G+ YD+ N F+N +LL T
Sbjct: 687 ---ATGKLVHTYDEHS-------------------EQVNCCHFTNKSNHLLLATGSNDF- 723
Query: 199 VLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVAS 255
L + N NS FSP+ + S S DG++ W VRS E S
Sbjct: 724 FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKS 780
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 49/265 (18%), Positives = 102/265 (38%), Gaps = 22/265 (8%)
Query: 29 YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 88
Y+ T S D+ ++++D + T + V+ FT+ ++ ++ + D L+L
Sbjct: 671 YIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSN-DFFLKLWD 729
Query: 89 LHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAA 148
L+ + GH + V + S S D T+ LWD R+ + + V
Sbjct: 730 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINV------ 783
Query: 149 AYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL 208
+ E P D+ + +S DG +++ + + + D LL
Sbjct: 784 ----KRFFLSSEDPPEDVEVI------VKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLL 832
Query: 209 STYNVKPVSRNSTLE-ASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIK 267
+ + +ST++ FSP + V W++ S +VA + +
Sbjct: 833 AEIH---TGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVM 889
Query: 268 WAPGSLMFVTGSSELSFWIPDLSKL 292
++P F+T S + + + + K+
Sbjct: 890 FSPDGSSFLTASDDQTIRVWETKKV 914
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 45/264 (17%), Positives = 92/264 (34%), Gaps = 62/264 (23%)
Query: 60 VDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFIS 119
V C + H V + ++G +++++ L +N+ GH V + + IS
Sbjct: 964 VSCCCLSPHLEYVAFGDEDG---AIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLIS 1020
Query: 120 GSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVV 179
S D + +W+ + + +Q D + L D+ ++
Sbjct: 1021 SSEDSVIQVWNWQT---GDYVFLQAHQETVKDFRLL------------------QDSRLL 1059
Query: 180 KFSNDGRLMLLTTMEGHIHV-LDSFRGTLLSTYNVKPVSRNSTLEA-------------- 224
+S DG + + + G I +GT+LS ++ S+ A
Sbjct: 1060 SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP 1119
Query: 225 --------------SFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPV----- 265
+FS +G+ + +G +G + W+V G+ + S E
Sbjct: 1120 LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGG 1179
Query: 266 ----IKWAPGSLMFVTGSSELSFW 285
+ ++P S V+ L +W
Sbjct: 1180 WVTDVCFSPDSKTLVSAGGYLKWW 1203
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 58/177 (32%), Gaps = 30/177 (16%)
Query: 79 GWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG 138
G D++L++ + K H D V+ + S + S D+ V +WD
Sbjct: 641 GADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS------- 693
Query: 139 LLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIH 198
G+ YD+ N F+N +LL T
Sbjct: 694 ---ATGKLVHTYDEHS-------------------EQVNCCHFTNKSNHLLLATGSNDF- 730
Query: 199 VLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVAS 255
L + N NS FSP+ + S S DG++ W VRS E S
Sbjct: 731 FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKS 787
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 49/265 (18%), Positives = 102/265 (38%), Gaps = 22/265 (8%)
Query: 29 YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 88
Y+ T S D+ ++++D + T + V+ FT+ ++ ++ + D L+L
Sbjct: 678 YIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSN-DFFLKLWD 736
Query: 89 LHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAA 148
L+ + GH + V + S S D T+ LWD R+ + + V
Sbjct: 737 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINV------ 790
Query: 149 AYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL 208
+ E P D+ + +S DG +++ + + + D LL
Sbjct: 791 ----KRFFLSSEDPPEDVEVI------VKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLL 839
Query: 209 STYNVKPVSRNSTLE-ASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIK 267
+ + +ST++ FSP + V W++ S +VA + +
Sbjct: 840 AEIH---TGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVM 896
Query: 268 WAPGSLMFVTGSSELSFWIPDLSKL 292
++P F+T S + + + + K+
Sbjct: 897 FSPDGSSFLTASDDQTIRVWETKKV 921
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 45/264 (17%), Positives = 92/264 (34%), Gaps = 62/264 (23%)
Query: 60 VDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFIS 119
V C + H V + ++G +++++ L +N+ GH V + + IS
Sbjct: 971 VSCCCLSPHLEYVAFGDEDG---AIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLIS 1027
Query: 120 GSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVV 179
S D + +W+ + + +Q D + L D+ ++
Sbjct: 1028 SSEDSVIQVWNWQT---GDYVFLQAHQETVKDFRLL------------------QDSRLL 1066
Query: 180 KFSNDGRLMLLTTMEGHIHV-LDSFRGTLLSTYNVKPVSRNSTLEA-------------- 224
+S DG + + + G I +GT+LS ++ S+ A
Sbjct: 1067 SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP 1126
Query: 225 --------------SFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPV----- 265
+FS +G+ + +G +G + W+V G+ + S E
Sbjct: 1127 LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGG 1186
Query: 266 ----IKWAPGSLMFVTGSSELSFW 285
+ ++P S V+ L +W
Sbjct: 1187 WVTDVCFSPDSKTLVSAGGYLKWW 1210
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/245 (20%), Positives = 97/245 (39%), Gaps = 42/245 (17%)
Query: 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFT---SHPTTVIYSSKNGWDES 83
G L+ + ++ ++D+ A T I ++ C+ S + V +S + D +
Sbjct: 109 GCTLIVGGEASTLSIWDLAAPT--PRIKAELTSSAPACYALAISPDSKVCFSCCS--DGN 164
Query: 84 LRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ 143
+ + LH+ R F+GH D + + + +G LD TV WD R +
Sbjct: 165 IAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR----------E 214
Query: 144 GRPAAAYDDQGLVFGYEKGPL-DIFSVGGDISDANV--------------------VKFS 182
GR +D +F P + +VG + S+ V +KF+
Sbjct: 215 GRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFA 274
Query: 183 NDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSV 242
G+ + T G ++L+++R T + +S L S + ++++GSGD
Sbjct: 275 YCGKWFVST---GKDNLLNAWR-TPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKA 330
Query: 243 HAWSV 247
+ V
Sbjct: 331 TVYEV 335
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 91/226 (40%), Gaps = 36/226 (15%)
Query: 29 YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 88
+++ SDD IR+++ T K ++ + + + HPT S + D +++L +
Sbjct: 69 WIIVGSDDFRIRVFNYN--TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD-DLTVKLWN 125
Query: 89 LHDN-KYSRYFKGHHDRVVLLSLCSSKD--CFISGSLDRTVLLWDQRAEKCQGLLRVQGR 145
+N + F+GH V+ ++ + KD F SG LDRTV +W L
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAF-NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 146 PAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG 205
Y D Y P + + SD +K + + T+EGH+ + SF
Sbjct: 185 RGVNYVD------YYPLPDKPYMITA--SDDLTIKIWDYQTKSCVATLEGHMSNV-SF-- 233
Query: 206 TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGK 251
A F P +ISGS DG++ W+ + K
Sbjct: 234 ------------------AVFHPTLPIIISGSEDGTLKIWNSSTYK 261
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 91/226 (40%), Gaps = 36/226 (15%)
Query: 29 YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 88
+++ SDD IR+++ T K ++ + + + HPT S + D +++L +
Sbjct: 69 WIIVGSDDFRIRVFNYN--TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD-DLTVKLWN 125
Query: 89 LHDN-KYSRYFKGHHDRVVLLSLCSSKD--CFISGSLDRTVLLWDQRAEKCQGLLRVQGR 145
+N + F+GH V+ ++ + KD F SG LDRTV +W L
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAF-NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 146 PAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG 205
Y D Y P + + SD +K + + T+EGH+ + SF
Sbjct: 185 RGVNYVD------YYPLPDKPYMITA--SDDLTIKIWDYQTKSCVATLEGHMSNV-SF-- 233
Query: 206 TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGK 251
A F P +ISGS DG++ W+ + K
Sbjct: 234 ------------------AVFHPTLPIIISGSEDGTLKIWNSSTYK 261
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 87/212 (41%), Gaps = 25/212 (11%)
Query: 30 LVTASDDESIRLYDVTAATCLK--TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 87
T D +IR++DVT + C++ T++ ++ G V + I S D +L
Sbjct: 267 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS--LDGTLNFY 324
Query: 88 SLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRA--EKCQGLL----- 140
L ++ + GH+ + L++ + ISGS D ++ W + + L+
Sbjct: 325 ELGHDEVLKTISGHNKGITALTV----NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN 380
Query: 141 -RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHV 199
+ Q + ++DD V G K S V +NDG +LT + + +
Sbjct: 381 SKAQEYSSISWDDTLKVNGITKHEFG--------SQPKVASANNDGFTAVLTN-DDDLLI 431
Query: 200 LDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM 231
L SF G ++ + + +L ++ G+
Sbjct: 432 LQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGL 463
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%)
Query: 222 LEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE 281
+ S +P+ +SG+ D S W VR G ++ +++ I + P F TGS +
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 247
Query: 282 LSFWIPDL 289
+ + DL
Sbjct: 248 ATCRLFDL 255
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 64/164 (39%), Gaps = 24/164 (14%)
Query: 101 HHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAY----DDQGLV 156
H V+ LSL F+SG+ D + LWD R C+ A +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 157 FGYEKGPLDIFSVGGD-----------ISDANVVKFSNDGRLMLLTTMEGHIHVLDSF-- 203
G + +F + D I V FS GRL+L + + +V D+
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 204 -RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWS 246
R +L+ ++ +R S L + +GM V +GS D + W+
Sbjct: 303 DRAGVLAGHD----NRVSCL--GVTDDGMAVATGSWDSFLKIWN 340
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 9/115 (7%)
Query: 30 LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 89
V+ + D S +L+DV C +T + ++ +CF + S D + RL L
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD---DATCRLFDL 255
Query: 90 HDNKYSRYFKGHHDRVVL----LSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
++ + HD ++ +S S ++G D +WD G+L
Sbjct: 256 RADQELMTYS--HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 171 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG 230
G ++ + + D RL+L + +G + + DS+ + + P+ + + +++P G
Sbjct: 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSY---TTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 231 MFVISGSGDG--SVHAWSVRSGK 251
+V G D S++ R G
Sbjct: 110 NYVACGGLDNICSIYNLKTREGN 132
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%)
Query: 222 LEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE 281
+ S +P+ +SG+ D S W VR G ++ +++ I + P F TGS +
Sbjct: 199 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 258
Query: 282 LSFWIPDL 289
+ + DL
Sbjct: 259 ATCRLFDL 266
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 64/164 (39%), Gaps = 24/164 (14%)
Query: 101 HHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAY----DDQGLV 156
H V+ LSL F+SG+ D + LWD R C+ A +
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 253
Query: 157 FGYEKGPLDIFSVGGD-----------ISDANVVKFSNDGRLMLLTTMEGHIHVLDSF-- 203
G + +F + D I V FS GRL+L + + +V D+
Sbjct: 254 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 313
Query: 204 -RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWS 246
R +L+ ++ +R S L + +GM V +GS D + W+
Sbjct: 314 DRAGVLAGHD----NRVSCL--GVTDDGMAVATGSWDSFLKIWN 351
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 9/115 (7%)
Query: 30 LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 89
V+ + D S +L+DV C +T + ++ +CF + S D + RL L
Sbjct: 210 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD---DATCRLFDL 266
Query: 90 HDNKYSRYFKGHHDRVVL----LSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
++ + HD ++ +S S ++G D +WD G+L
Sbjct: 267 RADQELMTYS--HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 319
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%)
Query: 222 LEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE 281
+ S +P+ +SG+ D S W VR G ++ +++ I + P F TGS +
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 247
Query: 282 LSFWIPDL 289
+ + DL
Sbjct: 248 ATCRLFDL 255
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 66/164 (40%), Gaps = 24/164 (14%)
Query: 101 HHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVF- 157
H V+ LSL F+SG+ D + LWD R C+ A + G F
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 158 -GYEKGPLDIFSVGGD-----------ISDANVVKFSNDGRLMLLTTMEGHIHVLDSF-- 203
G + +F + D I V FS GRL+L + + +V D+
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 204 -RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWS 246
R +L+ ++ +R S L + +GM V +GS D + W+
Sbjct: 303 DRAGVLAGHD----NRVSCL--GVTDDGMAVATGSWDSFLKIWN 340
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 9/115 (7%)
Query: 30 LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 89
V+ + D S +L+DV C +T + ++ +CF + S D + RL L
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD---DATCRLFDL 255
Query: 90 HDNKYSRYFKGHHDRVVL----LSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
++ + HD ++ +S S ++G D +WD G+L
Sbjct: 256 RADQELMTYS--HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 171 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG 230
G ++ + + D RL+L + +G + + DS+ + + P+ + + +++P G
Sbjct: 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSY---TTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 231 MFVISGSGDG--SVHAWSVRSGK 251
+V G D S++ R G
Sbjct: 110 NYVACGGLDNICSIYNLKTREGN 132
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%)
Query: 222 LEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE 281
+ S +P+ +SG+ D S W VR G ++ +++ I + P F TGS +
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 247
Query: 282 LSFWIPDL 289
+ + DL
Sbjct: 248 ATCRLFDL 255
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 64/164 (39%), Gaps = 24/164 (14%)
Query: 101 HHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAY----DDQGLV 156
H V+ LSL F+SG+ D + LWD R C+ A +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 157 FGYEKGPLDIFSVGGD-----------ISDANVVKFSNDGRLMLLTTMEGHIHVLDSF-- 203
G + +F + D I V FS GRL+L + + +V D+
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 204 -RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWS 246
R +L+ ++ +R S L + +GM V +GS D + W+
Sbjct: 303 DRAGVLAGHD----NRVSCL--GVTDDGMAVATGSWDSFLKIWN 340
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 9/115 (7%)
Query: 30 LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 89
V+ + D S +L+DV C +T + ++ +CF + S D + RL L
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD---DATCRLFDL 255
Query: 90 HDNKYSRYFKGHHDRVVL----LSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
++ + HD ++ +S S ++G D +WD G+L
Sbjct: 256 RADQELMTYS--HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%)
Query: 222 LEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE 281
+ S +P+ +SG+ D S W VR G ++ +++ I + P F TGS +
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 247
Query: 282 LSFWIPDL 289
+ + DL
Sbjct: 248 ATCRLFDL 255
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 66/164 (40%), Gaps = 24/164 (14%)
Query: 101 HHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVF- 157
H V+ LSL F+SG+ D + LWD R C+ A + G F
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 158 -GYEKGPLDIFSVGGD-----------ISDANVVKFSNDGRLMLLTTMEGHIHVLDSF-- 203
G + +F + D I V FS GRL+L + + +V D+
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 204 -RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWS 246
R +L+ ++ +R S L + +GM V +GS D + W+
Sbjct: 303 DRAGVLAGHD----NRVSCL--GVTDDGMAVATGSWDSFLKIWN 340
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 9/115 (7%)
Query: 30 LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 89
V+ + D S +L+DV C +T + ++ +CF + S D + RL L
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD---DATCRLFDL 255
Query: 90 HDNKYSRYFKGHHDRVVL----LSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
++ + HD ++ +S S ++G D +WD G+L
Sbjct: 256 RADQELMTYS--HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 29 YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 88
Y++T +DD+ IR+YD L ++ GV + + +H ++ S D ++R+
Sbjct: 134 YVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGST---DRTVRVWD 189
Query: 89 LHDNKYSRYFKGHHDRVVLLSLCSSKDC--FISGSLDRTVLLWDQRAE 134
+ + F+GH+ V L + K+ ++GS D T+ +W E
Sbjct: 190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE 237
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 112/264 (42%), Gaps = 50/264 (18%)
Query: 30 LVTASDDESIRLYDVTAATCLKTI---NSKKYGVDLVCFTSHPTTVIYSSKNG---W--- 80
LV+ S D ++R++D+ C NS +D+V + + V S N W
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 235
Query: 81 ---------DESLRLLSLHDNKYSRYF----KGHHDRVVLLSLCSSKDCFISGSLDRTVL 127
+E L H + + YF +GH V +S + +SGS D T++
Sbjct: 236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVS--GHGNIVVSGSYDNTLI 293
Query: 128 LWDQRAEKCQGLL-----RV--------QGRPAAAYDDQGL-VFGYEKGPLDIFSVGGDI 173
+WD KC +L R+ + R +A D + ++ E G L +++ G
Sbjct: 294 VWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGEL-XYTLQGHT 352
Query: 174 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA--SFSPEGM 231
+ +++ S+ + ++ +G S RG + Y+ K ++ L A +F
Sbjct: 353 ALVGLLRLSD--KFLVSAAADG------SIRGWDANDYSRKFSYHHTNLSAITTFYVSDN 404
Query: 232 FVISGSGDGSVHAWSVRSGKEVAS 255
++SGS + + +++RSGK V +
Sbjct: 405 ILVSGS-ENQFNIYNLRSGKLVHA 427
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 11/136 (8%)
Query: 4 SQSEREDKVSLELSEEILQSM---EVGIYLVTASDDESIRLYDVTAA---TCLKTINSKK 57
+Q + E +LE E ++S+ G L T S D+S+ +++V C+ +NS
Sbjct: 91 NQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHT 150
Query: 58 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY--SRYFKGHHDRVVLLSLCSSKD 115
V V + HP+ + +S + +D++++L ++ + +GH V L+ S
Sbjct: 151 QDVKHVVW--HPSQELLASAS-YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQ 207
Query: 116 CFISGSLDRTVLLWDQ 131
S S DRTV +W Q
Sbjct: 208 RLASCSDDRTVRIWRQ 223
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 218 RNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG--KEVASWMSFDTEPPVIKWAPGSLMF 275
+ + + ++SP G ++ S S D + W + V + + E + WAP +
Sbjct: 61 QRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLL 120
Query: 276 VTGSSELSFWIPDLSKLGAY 295
T S + S W+ ++ + Y
Sbjct: 121 ATCSRDKSVWVWEVDEEDEY 140
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 29 YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 88
Y++T +DD+ IR+YD L ++ GV + + +H ++ S D ++R+
Sbjct: 134 YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGST---DRTVRVWD 189
Query: 89 LHDNKYSRYFKGHHDRVVLLSLCSSKDC--FISGSLDRTVLLWDQRAE 134
+ + F+GH+ V L + K+ ++GS D T+ +W E
Sbjct: 190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE 237
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 12/94 (12%)
Query: 31 VTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH--PTTVIYSSKNGWDESLRLLS 88
++AS D +IR++D+ + T+ V L+ + + S GWD
Sbjct: 326 ISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDA------ 379
Query: 89 LHDNKYSRYFKGHHDRV-VLLSLCSSKDCFISGS 121
N YSR F HH + + + S + +SGS
Sbjct: 380 ---NDYSRKFSYHHTNLSAITTFYVSDNILVSGS 410
Score = 27.3 bits (59), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 9/111 (8%)
Query: 34 SDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVI--------YSSKNGWDESLR 85
S + +RL + LK + K+ H T+VI Y D+ +R
Sbjct: 86 SQQDRLRLSFLENIFILKNWYNPKFVPQRTTLRGHMTSVITCLQFEDNYVITGADDKMIR 145
Query: 86 LLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKC 136
+ + K+ GH V L +SGS DRTV +WD + C
Sbjct: 146 VYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCC 195
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 78/193 (40%), Gaps = 37/193 (19%)
Query: 111 CSSKDCFISGSLDRTVLLWDQRAEKCQG-------LLRVQGRPAAAYDDQGLVFGYEKGP 163
C +K C ++GS D ++ LWD +C + RV+ P Y ++ K P
Sbjct: 84 CFTKYC-VTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYF-LAILDNVMKNP 141
Query: 164 LDIFSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFRGTLLSTYNVKPVSRNSTL 222
I N+ + D LT + E IH + + G +T
Sbjct: 142 GSI----------NIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV----------- 180
Query: 223 EASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVI---KWAPGSLMFVTGS 279
A +S +G ++I+G DG + + V + E S D I +++P F+T S
Sbjct: 181 -AGWSTKGKYIIAGHKDGKISKYDVSNNYEYVD--SIDLHEKSISDMQFSPDLTYFITSS 237
Query: 280 SELSFWIPDLSKL 292
+ + ++ D+S L
Sbjct: 238 RDTNSFLVDVSTL 250
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 179 VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG 238
VK++ +G L+ + + V S G L T + + S F+ + ++GS
Sbjct: 38 VKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK---YCVTGSA 94
Query: 239 DGSVHAWSVRSGKEVASWMS 258
D S+ W V +G+ VA+W S
Sbjct: 95 DYSIKLWDVSNGQCVATWKS 114
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 8/111 (7%)
Query: 30 LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFT----SHPTTVIYSSKNGWDESLR 85
++ ASD ++ L+++ L KY D + T S T + K D S++
Sbjct: 108 ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGK---DFSVK 164
Query: 86 LLSLHDNKYSRYFKGHHDRVVLLSLCSSKDC-FISGSLDRTVLLWDQRAEK 135
+ L + + H V ++ C KD F+S D +LLWD R K
Sbjct: 165 VWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPK 215
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 69/168 (41%), Gaps = 32/168 (19%)
Query: 98 FKGHHDRVVLLSL-CSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLV 156
+GH RV +++ ++++ +S D +L+WD G AA L
Sbjct: 127 LEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDV------------GTGAAV-----LT 169
Query: 157 FGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV 216
G + P I+SV +S DG L+ + + + V++ +GT+++ + +P
Sbjct: 170 LGPDVHPDTIYSV----------DWSRDGALICTSCRDKRVRVIEPRKGTVVAEKD-RPH 218
Query: 217 SRNSTLEASFSPEGMFVISG---SGDGSVHAWSVRSGKEVASWMSFDT 261
+ A F EG + +G + V W + +E S DT
Sbjct: 219 EGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDT 266
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 86/212 (40%), Gaps = 25/212 (11%)
Query: 30 LVTASDDESIRLYDVTAATCLK--TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 87
T D +IR++DVT + C++ T++ ++ G V + I S D +L
Sbjct: 267 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS--LDGTLNFY 324
Query: 88 SLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRA--EKCQGLL----- 140
L ++ + GH+ + L++ + ISGS D + W + + L+
Sbjct: 325 ELGHDEVLKTISGHNKGITALTV----NPLISGSYDGRIXEWSSSSXHQDHSNLIVSLDN 380
Query: 141 -RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHV 199
+ Q + ++DD V G K S V +NDG +LT + + +
Sbjct: 381 SKAQEYSSISWDDTLKVNGITKHEFG--------SQPKVASANNDGFTAVLTN-DDDLLI 431
Query: 200 LDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM 231
L SF G ++ + + +L ++ G+
Sbjct: 432 LQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGL 463
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 69/168 (41%), Gaps = 32/168 (19%)
Query: 98 FKGHHDRVVLLSL-CSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLV 156
+GH RV +++ ++++ +S D +L+WD G AA L
Sbjct: 127 LEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDV------------GTGAAV-----LT 169
Query: 157 FGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV 216
G + P I+SV +S DG L+ + + + V++ +GT+++ + +P
Sbjct: 170 LGPDVHPDTIYSV----------DWSRDGALICTSCRDKRVRVIEPRKGTVVAEKD-RPH 218
Query: 217 SRNSTLEASFSPEGMFVISG---SGDGSVHAWSVRSGKEVASWMSFDT 261
+ A F EG + +G + V W + +E S DT
Sbjct: 219 EGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDT 266
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 226 FSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSELSF 284
FSP F+ + DG + W++++ K++ ++ F+ E V+K A + +S+ +F
Sbjct: 259 FSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDNILCLATSDDTF 316
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 226 FSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSELSF 284
FSP F+ + DG + W++++ K++ ++ F+ E V+K A + +S+ +F
Sbjct: 259 FSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDNILCLATSDDTF 316
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 34.3 bits (77), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 226 FSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSELSF 284
FSP F+ + DG + W++++ K++ ++ F+ E V+K A + +S+ +F
Sbjct: 259 FSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDNILCLATSDDTF 316
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 34.3 bits (77), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 226 FSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSELSF 284
FSP F+ + DG + W++++ K++ ++ F+ E V+K A + +S+ +F
Sbjct: 259 FSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDNILCLATSDDTF 316
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 21/124 (16%)
Query: 29 YLVTASDDESIRLYDVTAATC-LKTINSKKYGVDLVCFTSHPTTV-------IYSSKNGW 80
YL++ASDD +I L+D+ A + I++K FT H V ++ S G
Sbjct: 196 YLLSASDDHTICLWDINATPKEHRVIDAKN------IFTGHTAVVEDVAWHLLHESLFGS 249
Query: 81 ---DESLRLLSLHDN---KYSRYFKGHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRA 133
D+ L + +N K S H V LS S+ +GS D+TV LWD R
Sbjct: 250 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 309
Query: 134 EKCQ 137
K +
Sbjct: 310 LKLK 313
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 21/124 (16%)
Query: 29 YLVTASDDESIRLYDVTAATC-LKTINSKKYGVDLVCFTSHPTTV-------IYSSKNGW 80
YL++ASDD +I L+D+ A + I++K FT H V ++ S G
Sbjct: 200 YLLSASDDHTICLWDINATPKEHRVIDAKN------IFTGHTAVVEDVAWHLLHESLFGS 253
Query: 81 ---DESLRLLSLHDN---KYSRYFKGHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRA 133
D+ L + +N K S H V LS S+ +GS D+TV LWD R
Sbjct: 254 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 313
Query: 134 EKCQ 137
K +
Sbjct: 314 LKLK 317
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 21/124 (16%)
Query: 29 YLVTASDDESIRLYDVTAATC-LKTINSKKYGVDLVCFTSHPTTV-------IYSSKNGW 80
YL++ASDD +I L+D+ A + I++K FT H V ++ S G
Sbjct: 198 YLLSASDDHTICLWDINATPKEHRVIDAKN------IFTGHTAVVEDVAWHLLHESLFGS 251
Query: 81 ---DESLRLLSLHDN---KYSRYFKGHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRA 133
D+ L + +N K S H V LS S+ +GS D+TV LWD R
Sbjct: 252 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 311
Query: 134 EKCQ 137
K +
Sbjct: 312 LKLK 315
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 68/149 (45%), Gaps = 8/149 (5%)
Query: 152 DQGLVFGYEKGPLDIFSVGGDISD-ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLST 210
D V +E P S G+ + + V+++ DG L T +G I + + GT
Sbjct: 168 DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGV 227
Query: 211 Y---NVKPVSRN-STLEASFSPEGMFVISGSGDGSVHAWSV---RSGKEVASWMSFDTEP 263
+ ++K V+ + S ++SP+G + S S D ++ W+V + K + + +
Sbjct: 228 FEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQ 287
Query: 264 PVIKWAPGSLMFVTGSSELSFWIPDLSKL 292
I W +L+ ++ + ++F P+L +
Sbjct: 288 LGIIWTKQALVSISANGFINFVNPELGSI 316
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Query: 175 DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA-SFSPEGMFV 233
+++ V SND + + + + +HV ++ + S VK + + + + +FS G F+
Sbjct: 450 NSSCVALSNDKQFVAVGGQDSKVHV---YKLSGASVSEVKTIVHPAEITSVAFSNNGAFL 506
Query: 234 ISGSGDGSVHAWSVRSGKEVA---SWMSFDTEPPVIKWAPGSLMFVTGSSELSFWIPDLS 290
++ V +SV + E+A SW + + W+P ++ TGS + S + +++
Sbjct: 507 VATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN 566
Query: 291 K 291
K
Sbjct: 567 K 567
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 21/124 (16%)
Query: 29 YLVTASDDESIRLYDVTAATCL-KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL--- 84
+L++ASDD +I L+D++A K +++K FT H V S + ESL
Sbjct: 192 HLLSASDDHTICLWDISAVPKEGKVVDAK------TIFTGHTAVVEDVSWHLLHESLFGS 245
Query: 85 -----RLL-----SLHDNKYSRYFKGHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRA 133
+L+ S + +K S H V LS S+ +GS D+TV LWD R
Sbjct: 246 VADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 305
Query: 134 EKCQ 137
K +
Sbjct: 306 LKLK 309
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 186 RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAW 245
R +L T EG I VLDS L + VS + L+ F P G +IS S D + W
Sbjct: 107 RRFILGTTEGDIKVLDS-NFNLQREIDQAHVSEITKLK--FFPSGEALISSSQDMQLKIW 163
Query: 246 SVRSG 250
SV+ G
Sbjct: 164 SVKDG 168
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 38/203 (18%), Positives = 80/203 (39%), Gaps = 14/203 (6%)
Query: 81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
D L++ S+ D R GH V +++ +S SLD T+ LW+
Sbjct: 157 DMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTF 216
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
+ P + L G ++ +I + S N ++F G+ ++ GH+ +
Sbjct: 217 NRKENPHDGVNSIALFVGTDRQLHEIST-----SKKNNLEFGTYGKYVI----AGHVSGV 267
Query: 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEG---MFVISGSGDGSVHAWSVRSGKEVASWM 257
+ ++ S+ + S + +G ++ +G +G + W +RS +
Sbjct: 268 ITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEF 327
Query: 258 SFDTEPPV--IKWAPGSLMFVTG 278
+ P+ + +A G+L +G
Sbjct: 328 LINEGTPINNVYFAAGALFVSSG 350
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 186 RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAW 245
R +L T EG I VLDS L + VS + L+ F P G +IS S D + W
Sbjct: 110 RRFILGTTEGDIKVLDS-NFNLQREIDQAHVSEITKLK--FFPSGEALISSSQDMQLKIW 166
Query: 246 SVRSG 250
SV+ G
Sbjct: 167 SVKDG 171
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 40/203 (19%), Positives = 81/203 (39%), Gaps = 14/203 (6%)
Query: 81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
D L++ S+ D R GH V +++ +S SLD T+ LW+
Sbjct: 160 DMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTF 219
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
+ P + L G ++ +I + S N ++F G+ ++ + G I V
Sbjct: 220 NRKENPHDGVNSIALFVGTDRQLHEIST-----SKKNNLEFGTYGKYVIAGHVSGVITVH 274
Query: 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEG---MFVISGSGDGSVHAWSVRSGKEVASWM 257
+ F ++ S+ + S + +G ++ +G +G + W +RS +
Sbjct: 275 NVFS----KEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEF 330
Query: 258 SFDTEPPV--IKWAPGSLMFVTG 278
+ P+ + +A G+L +G
Sbjct: 331 LINEGTPINNVYFAAGALFVSSG 353
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 80 WDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWD 130
WD++LRL L + F GH V ++ +S +R + LW+
Sbjct: 96 WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN 146
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 12/111 (10%)
Query: 30 LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTT---------VIYSSKNGW 80
+++A + I+L+++ + + + + C P Y + GW
Sbjct: 133 ILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGW 192
Query: 81 DESLRLLSLHDNKYSRY-FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWD 130
D L++ + N RY FK H V LS+ + +G D+ +L+WD
Sbjct: 193 DGRLKVW--NTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWD 241
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 9/60 (15%)
Query: 81 DESLRLLSLHDNKYSRYF-------KGHHDRVVLLSLCSSKDCF-ISGSLDRTVLLWDQR 132
D+++ + L++ + + YF GH+ V L+L S ++CF IS S D+T+ LWD R
Sbjct: 48 DKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLAL-SQENCFAISSSWDKTLRLWDLR 106
>pdb|1CP9|B Chain B, Crystal Structure Of Penicillin G Acylase From The Bro1
Mutant Strain Of Providencia Rettgeri
Length = 553
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 24/123 (19%)
Query: 51 KTINS------KKYGVDLVCFTSHPTTVIYSSKN--GWDESLRLLSLHDNKYSRYFKGHH 102
KT+N+ +KYG + + + T + + N G ++L + H N+Y +G
Sbjct: 425 KTLNTTYQKMIEKYGDNPANWQTPATALTFRENNFFGIPQALPQENFHQNEYHN--RGTE 482
Query: 103 DRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQ-GLVFGYEK 161
+ +++ + + V WD A G + QG+P+ Y DQ L + K
Sbjct: 483 NDLIVFT-------------EEGVSAWDVVAPGQSGFISPQGKPSPHYQDQLSLYQQFGK 529
Query: 162 GPL 164
PL
Sbjct: 530 KPL 532
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 61/178 (34%), Gaps = 32/178 (17%)
Query: 79 GWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISG-SLDRTVLLWDQRAEKCQ 137
G D++L++ + K H D V+ + S+ D FI+ S+D+ V +W+
Sbjct: 640 GADKTLQVFKAETGEKLLEIKAHEDEVLCCAF-STDDRFIATCSVDKKVKIWNS------ 692
Query: 138 GLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHI 197
+ G YD+ N F+N +LL T
Sbjct: 693 ----MTGELVHTYDEHS-------------------EQVNCCHFTNSSHHLLLATGSSDC 729
Query: 198 HVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVAS 255
L + N NS FSP+ + S S DG++ W S E S
Sbjct: 730 -FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKS 786
Score = 30.8 bits (68), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 30/148 (20%), Positives = 58/148 (39%), Gaps = 42/148 (28%)
Query: 27 GIYLVTASDDESIRLYDVTAATC------------------------------LKTINSK 56
G +T+SDD++IRL++ T C L+ IN +
Sbjct: 900 GSSFLTSSDDQTIRLWE-TKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGR 958
Query: 57 KYGVDLV--------CFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLL 108
+D + C + H + + +NG ++ +L L +N+ + H V +
Sbjct: 959 TGQIDYLTEAQVSCCCLSPHLQYIAFGDENG---AIEILELVNNRIFQSRFQHKKTVWHI 1015
Query: 109 SLCSSKDCFISGSLDRTVLLWDQRAEKC 136
+ + IS S D + +W+ + +KC
Sbjct: 1016 QFTADEKTLISSSDDAEIQVWNWQLDKC 1043
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 8/111 (7%)
Query: 30 LVTASDDESIRLYDVTAATCLKTINSKKYG----VDLVCFTSHPTTVIYSSKNGWDESLR 85
++ ASD ++ L+++ L KY V V S T + SK D ++
Sbjct: 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSK---DICIK 152
Query: 86 LLSLHDNKYSRYFKGHHDRVVLLSLCSSKD-CFISGSLDRTVLLWDQRAEK 135
+ L ++ H +V ++ KD F+S S D +LLWD R K
Sbjct: 153 VWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK 203
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 51/123 (41%), Gaps = 19/123 (15%)
Query: 29 YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTV-------IYSSKNGW- 80
+L++ASDD ++ L+D+ A I K FT H V ++ S G
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAK-----AIFTGHSAVVEDVAWHLLHESLFGSV 248
Query: 81 --DESLRLLSLHDN---KYSRYFKGHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAE 134
D+ L + N K S H V LS S+ +GS D+TV LWD R
Sbjct: 249 ADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 308
Query: 135 KCQ 137
K +
Sbjct: 309 KLK 311
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 78/192 (40%), Gaps = 48/192 (25%)
Query: 117 FISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIF------SVG 170
+S S D TV LWD A +G + D + + G+ D+ S+
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKI---------VDAKAIFTGHSAVVEDVAWHLLHESLF 245
Query: 171 GDISDANVVKFSNDGRLMLLTTMEGHI----HVLDSFRGTLLSTYNVKPVSRNSTLEASF 226
G ++D D +LM+ T H++D+ + SF
Sbjct: 246 GSVAD--------DQKLMIWDTRSNTTSKPSHLVDAHTAEVNCL--------------SF 283
Query: 227 SPEGMFVI-SGSGDGSVHAWSVRSGK-EVASWMSFDTEPPVIKWAPGSLMFVTGSS---E 281
+P F++ +GS D +V W +R+ K ++ ++ S E + W+P + + S
Sbjct: 284 NPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRR 343
Query: 282 LSFWIPDLSKLG 293
L+ W DLSK+G
Sbjct: 344 LNVW--DLSKIG 353
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 51/123 (41%), Gaps = 19/123 (15%)
Query: 29 YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTV-------IYSSKNGW- 80
+L++ASDD ++ L+D+ A I K FT H V ++ S G
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAK-----AIFTGHSAVVEDVAWHLLHESLFGSV 248
Query: 81 --DESLRLLSLHDN---KYSRYFKGHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAE 134
D+ L + N K S H V LS S+ +GS D+TV LWD R
Sbjct: 249 ADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 308
Query: 135 KCQ 137
K +
Sbjct: 309 KLK 311
>pdb|4I37|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant R402g
Length = 536
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 57 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDC 116
KYG L CF H + ++ + D L + K + +GH D + L+ C ++
Sbjct: 340 KYGESL-CFVQHVASGLWLTYAAPDPKALRLGVLKKKAILHQEGHMDDALFLTRCQQEES 398
Query: 117 FISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
+G + T L++Q +GL G+P
Sbjct: 399 QAAGMIHSTAGLYNQFI---KGLDSFSGKP 425
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 34 SDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES-LRLLSLHDN 92
+ D IR+++V + CL +++ V + ++ H +I S +G+ ++ L +
Sbjct: 309 TSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELI--SGHGFAQNQLVIWKYPTM 365
Query: 93 KYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLW 129
KGH RV+ L++ S + D T+ LW
Sbjct: 366 AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 34 SDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES-LRLLSLHDN 92
+ D IR+++V + CL +++ V + ++ H +I S +G+ ++ L +
Sbjct: 298 TSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELI--SGHGFAQNQLVIWKYPTM 354
Query: 93 KYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLW 129
KGH RV+ L++ S + D T+ LW
Sbjct: 355 AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 54/136 (39%), Gaps = 8/136 (5%)
Query: 38 SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY 97
+I +Y +T T + + ++ F ++ +S +G +LR+ +
Sbjct: 228 AIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDG---TLRIWHGGNGNSQNC 284
Query: 98 FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAA----YDDQ 153
F GH +V S D IS S+D +V LW + L V G P A D Q
Sbjct: 285 FYGHSQSIVSASWVGD-DKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQ 343
Query: 154 GLVFGYEKGPLDIFSV 169
+ G ++++ +
Sbjct: 344 KYAVAFMDGQVNVYDL 359
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 34 SDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES-LRLLSLHDN 92
+ D IR+++V + CL +++ V + ++ H +I S +G+ ++ L +
Sbjct: 218 TSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELI--SGHGFAQNQLVIWKYPTM 274
Query: 93 KYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLW 129
KGH RV+ L++ S + D T+ LW
Sbjct: 275 AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|2ABJ|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|D Chain D, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|G Chain G, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|J Chain J, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate
Length = 366
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 44 VTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD----ESLRLLSLHDNKYSRYF 98
VT AT LK V FT H TV +SS+ GW+ + L+ LSLH + ++
Sbjct: 12 VTPATILKEKPDPNNLVFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHY 70
>pdb|2COG|A Chain A, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
4-Methylvalerate
pdb|2COG|B Chain B, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
4-Methylvalerate
pdb|2COI|A Chain A, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COI|B Chain B, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COJ|A Chain A, Crystal Structure Of Reduced Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COJ|B Chain B, Crystal Structure Of Reduced Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
Length = 386
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 44 VTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD----ESLRLLSLHDNKYSRYF 98
VT AT LK V FT H TV +SS+ GW+ + L+ LSLH + ++
Sbjct: 32 VTPATILKEKPDPNNLVFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHY 90
>pdb|4I2S|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant I404m
Length = 536
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 57 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDC 116
KYG L CF H + ++ + D L + K + +GH D + L+ C ++
Sbjct: 340 KYGESL-CFVQHVASGLWLTYAAPDPKALRLGVLKKKAILHQEGHMDDALFLTRCQQEES 398
Query: 117 FISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
+ + T L++Q +GL G+P
Sbjct: 399 QAARMMHSTAGLYNQFI---KGLDSFSGKP 425
>pdb|3IUB|A Chain A, Crystal Structure Of Pantothenate Synthetase From
Mycobacterium Tuberculosis In Complex With
5-Methoxy-N-(5-
Methylpyridin-2-Ylsulfonyl)-1h-Indole-2-Carboxamide
pdb|3IUB|B Chain B, Crystal Structure Of Pantothenate Synthetase From
Mycobacterium Tuberculosis In Complex With
5-Methoxy-N-(5-
Methylpyridin-2-Ylsulfonyl)-1h-Indole-2-Carboxamide
pdb|3IUE|A Chain A, Crystal Structure Of Pantothenate Synthetase In Complex
With 2-(5-
Methoxy-2-(5-Methylpyridin-2-Ylsulfonylcarbamoyl)-1h-
Indol-1-Yl) Acetic Acid
pdb|3IUE|B Chain B, Crystal Structure Of Pantothenate Synthetase In Complex
With 2-(5-
Methoxy-2-(5-Methylpyridin-2-Ylsulfonylcarbamoyl)-1h-
Indol-1-Yl) Acetic Acid
pdb|3IVC|A Chain A, Crystal Structure Of Pantothenate Synthetase In Complex
With 2-(2-
((Benzofuran-2-Ylmethoxy)carbonyl)-5-Methoxy-1h-Indol-1-
Yl)acetic Acid
pdb|3IVC|B Chain B, Crystal Structure Of Pantothenate Synthetase In Complex
With 2-(2-
((Benzofuran-2-Ylmethoxy)carbonyl)-5-Methoxy-1h-Indol-1-
Yl)acetic Acid
pdb|3IVG|A Chain A, Crystal Structure Of Pantothenate Synthetase In Complex
With 2-(2-
((Benzofuran-2-Sulfonamido)methyl)-5-Methoxy-1h-Indol-1-
Yl)acetic Acid
pdb|3IVG|B Chain B, Crystal Structure Of Pantothenate Synthetase In Complex
With 2-(2-
((Benzofuran-2-Sulfonamido)methyl)-5-Methoxy-1h-Indol-1-
Yl)acetic Acid
pdb|3IVX|A Chain A, Crystal Structure Of Pantothenate Synthetase In Complex
With 2-(2-
(Benzofuran-2-Ylsulfonylcarbamoyl)-5-Methoxy-1h-Indol-1-
Yl)acetic Acid
pdb|3IVX|B Chain B, Crystal Structure Of Pantothenate Synthetase In Complex
With 2-(2-
(Benzofuran-2-Ylsulfonylcarbamoyl)-5-Methoxy-1h-Indol-1-
Yl)acetic Acid
pdb|4DDH|A Chain A, Pantothenate Synthetase In Complex With
6-methoxy-1-benzofuran-3-yl Acetic Acid
pdb|4DDH|B Chain B, Pantothenate Synthetase In Complex With
6-methoxy-1-benzofuran-3-yl Acetic Acid
pdb|4DDK|A Chain A, Pantothenate Synthetase In Complex With
1,3-benzodioxole-5-carboxylic Acid
pdb|4DDK|B Chain B, Pantothenate Synthetase In Complex With
1,3-benzodioxole-5-carboxylic Acid
pdb|4DDM|A Chain A, Pantothenate Synthetase In Complex With
2,1,3-benzothiadiazole-5- Carboxylic Acid
pdb|4DDM|B Chain B, Pantothenate Synthetase In Complex With
2,1,3-benzothiadiazole-5- Carboxylic Acid
Length = 301
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 159 YEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM----EGHIHVL 200
+ G L+++S GD++D + R+ML+ TM EGH+ ++
Sbjct: 6 FHPGELNVYSAPGDVADVSRALRLTGRRVMLVPTMGALHEGHLALV 51
>pdb|3COV|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.5 Ang Resolution- Apo Form
pdb|3COV|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.5 Ang Resolution- Apo Form
pdb|3COW|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.8 Ang Resolution- In
Complex With Sulphonamide Inhibitor 2
pdb|3COW|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.8 Ang Resolution- In
Complex With Sulphonamide Inhibitor 2
pdb|3COY|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 2.05 Ang Resolution- In
Complex With Sulphonamide Inhibitor 3
pdb|3COY|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 2.05 Ang Resolution- In
Complex With Sulphonamide Inhibitor 3
pdb|3COZ|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 2.0 Ang Resolution- In
Complex With Sulphonamide Inhibitor 4
pdb|3COZ|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 2.0 Ang Resolution- In
Complex With Sulphonamide Inhibitor 4
pdb|3IMC|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.6 Ang Resolution In Complex
With Fragment Compound 5- Methoxyindole, Sulfate And
Glycerol
pdb|3IMC|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.6 Ang Resolution In Complex
With Fragment Compound 5- Methoxyindole, Sulfate And
Glycerol
pdb|3IME|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 2.40 Ang Resolution In
Complex With Fragment Compound 1-Benzofuran-2-Carboxylic
Acid
pdb|3IME|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 2.40 Ang Resolution In
Complex With Fragment Compound 1-Benzofuran-2-Carboxylic
Acid
pdb|3IMG|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.8 Ang Resolution In A
Ternary Complex With Fragment Compounds 5-Methoxyindole
And 1-Benzofuran-2-Carboxylic Acid
pdb|3IMG|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.8 Ang Resolution In A
Ternary Complex With Fragment Compounds 5-Methoxyindole
And 1-Benzofuran-2-Carboxylic Acid
pdb|3IOB|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.80 Ang Resolution In
Complex With 5'-deoxy-5'- Thioadenosine
pdb|3IOB|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.80 Ang Resolution In
Complex With 5'-deoxy-5'- Thioadenosine
pdb|3IOC|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 2.50 Ang Resolution In
Complex With 5'-Deoxy-5'- (Benzyldisulfanyl)-Adenosine
pdb|3IOC|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 2.50 Ang Resolution In
Complex With 5'-Deoxy-5'- (Benzyldisulfanyl)-Adenosine
pdb|3IOD|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.75 Ang Resolution In
Complex With 5'-Deoxy-5'-((3-
Nitrobenzyl)disulfanyl)-Adenosine
pdb|3IOD|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.75 Ang Resolution In
Complex With 5'-Deoxy-5'-((3-
Nitrobenzyl)disulfanyl)-Adenosine
pdb|3IOE|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.95 Ang Resolution In
Complex With 5'-Deoxy-5'-((R)-3,
4-Dihydroxybutylthio)-Adenosine
pdb|3IOE|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.95 Ang Resolution In
Complex With 5'-Deoxy-5'-((R)-3,
4-Dihydroxybutylthio)-Adenosine
Length = 301
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 159 YEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM----EGHIHVL 200
+ G L+++S GD++D + R+ML+ TM EGH+ ++
Sbjct: 7 FHPGELNVYSAPGDVADVSRALRLTGRRVMLVPTMGALHEGHLALV 52
>pdb|1MOP|A Chain A, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis
pdb|1MOP|B Chain B, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis
pdb|1N2B|A Chain A, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis In Complex With Ampcpp And Pantoate, Higher
Occupancy Of Pantoate And Lower Occupancy Of Ampcpp In
Subunit A
pdb|1N2B|B Chain B, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis In Complex With Ampcpp And Pantoate, Higher
Occupancy Of Pantoate And Lower Occupancy Of Ampcpp In
Subunit A
pdb|1N2E|A Chain A, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis In Complex With Ampcpp And Pantoate
pdb|1N2E|B Chain B, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis In Complex With Ampcpp And Pantoate
pdb|1N2G|A Chain A, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis In Complex With Ampcpp
pdb|1N2G|B Chain B, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis In Complex With Ampcpp
pdb|1N2H|A Chain A, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis In Complex With A Reaction Intermediate,
Pantoyl Adenylate
pdb|1N2H|B Chain B, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis In Complex With A Reaction Intermediate,
Pantoyl Adenylate
pdb|1N2I|A Chain A, Crystal Structure Of Pantothenate Synthetase From M.
Tuberculosis In Complex With A Reaction Intermediate,
Pantoyl Adenylate, Different Occupancies Of Pantoyl
Adenylate
pdb|1N2I|B Chain B, Crystal Structure Of Pantothenate Synthetase From M.
Tuberculosis In Complex With A Reaction Intermediate,
Pantoyl Adenylate, Different Occupancies Of Pantoyl
Adenylate
pdb|1N2J|A Chain A, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis In Complex With Pantoate
pdb|1N2J|B Chain B, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis In Complex With Pantoate
pdb|1N2O|A Chain A, Crystal Structure Of Pantothenate Synthetase From M.
Tuberculosis, Low Occupancy Of Beta-Alanine At The
Pantoate Binding Sites
pdb|1N2O|B Chain B, Crystal Structure Of Pantothenate Synthetase From M.
Tuberculosis, Low Occupancy Of Beta-Alanine At The
Pantoate Binding Sites
pdb|2A7X|A Chain A, Crystal Structure Of A Pantothenate Synthetase Complexed
With Amp
pdb|2A84|A Chain A, Crystal Structure Of A Pantothenate Synthetase Complexed
With Atp
pdb|2A86|A Chain A, Crystal Structure Of A Pantothenate Synthetase Complexed
With Amp And Beta-Alanine
pdb|2A86|B Chain B, Crystal Structure Of A Pantothenate Synthetase Complexed
With Amp And Beta-Alanine
pdb|2A88|A Chain A, Crystal Structure Of A Pantothenate Synthetase, Apo Enzyme
In C2 Space Group
pdb|3ISJ|A Chain A, Crystal Structure Of Pantothenate Synthetase From
Mycobacterium Tuberculosis In Complex With
5-Methoxy-N-(Methylsulfonyl)-1h-Indole- 2-Carboxamide
pdb|3ISJ|B Chain B, Crystal Structure Of Pantothenate Synthetase From
Mycobacterium Tuberculosis In Complex With
5-Methoxy-N-(Methylsulfonyl)-1h-Indole- 2-Carboxamide
pdb|3LE8|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.70 Angstrom Resolution In
Complex With 2-
(2-((Benzofuran-2-Carboxamido)methyl)-5-Methoxy-1h-
Indol-1- Yl)acetic Acid
pdb|3LE8|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.70 Angstrom Resolution In
Complex With 2-
(2-((Benzofuran-2-Carboxamido)methyl)-5-Methoxy-1h-
Indol-1- Yl)acetic Acid
Length = 300
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 159 YEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM----EGHIHVL 200
+ G L+++S GD++D + R+ML+ TM EGH+ ++
Sbjct: 6 FHPGELNVYSAPGDVADVSRALRLTGRRVMLVPTMGALHEGHLALV 51
>pdb|4I6I|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-559) Disease Mutant R45c
Length = 559
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 57 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDC 116
KYG L CF H + ++ + D L + K + +GH D + L+ C ++
Sbjct: 340 KYGESL-CFVQHVASGLWLTYAAPDPKALRLGVLKKKAILHQEGHMDDALFLTRCQQEES 398
Query: 117 FISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
+ + T L++Q +GL G+P
Sbjct: 399 QAARMIHSTAGLYNQFI---KGLDSFSGKP 425
>pdb|4I0Y|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant C36r
Length = 536
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 57 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDC 116
KYG L CF H + ++ + D L + K + +GH D + L+ C ++
Sbjct: 340 KYGESL-CFVQHVASGLWLTYAAPDPKALRLGVLKKKAILHQEGHMDDALFLTRCQQEES 398
Query: 117 FISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
+ + T L++Q +GL G+P
Sbjct: 399 QAARMIHSTAGLYNQFI---KGLDSFSGKP 425
>pdb|4I7I|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant L14r
Length = 536
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 57 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDC 116
KYG L CF H + ++ + D L + K + +GH D + L+ C ++
Sbjct: 340 KYGESL-CFVQHVASGLWLTYAAPDPKALRLGVLKKKAILHQEGHMDDALFLTRCQQEES 398
Query: 117 FISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
+ + T L++Q +GL G+P
Sbjct: 399 QAARMIHSTAGLYNQFI---KGLDSFSGKP 425
>pdb|4I3N|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant D61n
Length = 536
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 57 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDC 116
KYG L CF H + ++ + D L + K + +GH D + L+ C ++
Sbjct: 340 KYGESL-CFVQHVASGLWLTYAAPDPKALRLGVLKKKAILHQEGHMDDALFLTRCQQEES 398
Query: 117 FISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
+ + T L++Q +GL G+P
Sbjct: 399 QAARMIHSTAGLYNQFI---KGLDSFSGKP 425
>pdb|2XOA|A Chain A, Crystal Structure Of The N-Terminal Three Domains Of The
Skeletal Muscle Ryanodine Receptor (Ryr1)
Length = 559
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 57 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDC 116
KYG L CF H + ++ + D L + K + +GH D + L+ C ++
Sbjct: 340 KYGESL-CFVQHVASGLWLTYAAPDPKALRLGVLKKKAILHQEGHMDDALFLTRCQQEES 398
Query: 117 FISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
+ + T L++Q +GL G+P
Sbjct: 399 QAARMIHSTAGLYNQFI---KGLDSFSGKP 425
>pdb|4I8M|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant V219i
Length = 536
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 57 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDC 116
KYG L CF H + ++ + D L + K + +GH D + L+ C ++
Sbjct: 340 KYGESL-CFVQHVASGLWLTYAAPDPKALRLGVLKKKAILHQEGHMDDALFLTRCQQEES 398
Query: 117 FISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
+ + T L++Q +GL G+P
Sbjct: 399 QAARMIHSTAGLYNQFI---KGLDSFSGKP 425
>pdb|4I1E|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant G249r
Length = 536
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 57 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDC 116
KYG L CF H + ++ + D L + K + +GH D + L+ C ++
Sbjct: 340 KYGESL-CFVQHVASGLWLTYAAPDPKALRLGVLKKKAILHQEGHMDDALFLTRCQQEES 398
Query: 117 FISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
+ + T L++Q +GL G+P
Sbjct: 399 QAARMIHSTAGLYNQFI---KGLDSFSGKP 425
>pdb|4I96|A Chain A, Crystal Structure Of The N-terminal Two Domains Of The
Skeletal Muscle Ryanodine Receptor (rabbit Ryr1)
Residues 217-536
Length = 320
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 57 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDC 116
KYG L CF H + ++ + D L + K + +GH D + L+ C ++
Sbjct: 124 KYGESL-CFVQHVASGLWLTYAAPDPKALRLGVLKKKAILHQEGHMDDALFLTRCQQEES 182
Query: 117 FISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
+ + T L++Q +GL G+P
Sbjct: 183 QAARMIHSTAGLYNQ---FIKGLDSFSGKP 209
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
Query: 39 IRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY- 97
+ +YDV + T L+T+ + V + + H + S++G + HD + + +
Sbjct: 158 VDIYDVESQTKLRTMAGHQARVGCLSWNRH--VLSSGSRSG------AIHHHDVRIANHQ 209
Query: 98 ---FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRA 133
+GH V L+ S SG D V +WD R+
Sbjct: 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS 248
>pdb|2FL8|A Chain A, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|B Chain B, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|C Chain C, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|D Chain D, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|E Chain E, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|F Chain F, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|G Chain G, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|H Chain H, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|I Chain I, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|J Chain J, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|K Chain K, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|L Chain L, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|M Chain M, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|N Chain N, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|O Chain O, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|P Chain P, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|Q Chain Q, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|R Chain R, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL9|A Chain A, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|B Chain B, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|C Chain C, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|D Chain D, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|E Chain E, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|F Chain F, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|G Chain G, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|H Chain H, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|I Chain I, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|J Chain J, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|K Chain K, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|L Chain L, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|M Chain M, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|N Chain N, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|O Chain O, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|P Chain P, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|Q Chain Q, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|R Chain R, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
Length = 602
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 181 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTL 222
SN R L ++G LD FRGT + N++ R + L
Sbjct: 159 ISNVARKEFLVEVQGQTDFLDVFRGTSYNVNNIRVKHRGNEL 200
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,313,198
Number of Sequences: 62578
Number of extensions: 389098
Number of successful extensions: 1710
Number of sequences better than 100.0: 100
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 1070
Number of HSP's gapped (non-prelim): 344
length of query: 304
length of database: 14,973,337
effective HSP length: 98
effective length of query: 206
effective length of database: 8,840,693
effective search space: 1821182758
effective search space used: 1821182758
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)