Query 036585
Match_columns 304
No_of_seqs 677 out of 1111
Neff 12.0
Searched_HMMs 46136
Date Fri Mar 29 03:29:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036585.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036585hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.3E-51 2.8E-56 306.8 23.9 273 8-286 105-479 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 5.4E-50 1.2E-54 301.4 20.8 250 19-303 179-434 (459)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.6E-48 3.5E-53 293.4 18.4 247 5-286 204-458 (459)
4 KOG0315 G-protein beta subunit 100.0 6E-46 1.3E-50 261.8 27.3 268 27-301 10-302 (311)
5 KOG0263 Transcription initiati 100.0 2.9E-44 6.4E-49 289.9 22.7 236 19-289 382-650 (707)
6 KOG0286 G-protein beta subunit 100.0 3.8E-42 8.2E-47 247.9 30.2 271 11-286 48-343 (343)
7 KOG0279 G protein beta subunit 100.0 7.3E-43 1.6E-47 249.9 26.0 241 11-288 56-313 (315)
8 KOG0279 G protein beta subunit 100.0 5.9E-43 1.3E-47 250.4 25.4 251 6-291 3-265 (315)
9 KOG0271 Notchless-like WD40 re 100.0 1.4E-43 3.1E-48 264.1 19.6 250 49-302 107-454 (480)
10 KOG1446 Histone H3 (Lys4) meth 100.0 1.3E-40 2.8E-45 242.6 31.9 279 14-293 13-308 (311)
11 KOG0295 WD40 repeat-containing 100.0 1.1E-40 2.4E-45 246.9 24.7 271 10-286 100-404 (406)
12 KOG0318 WD40 repeat stress pro 100.0 2E-39 4.4E-44 250.9 31.4 279 6-288 178-560 (603)
13 KOG0284 Polyadenylation factor 100.0 5.9E-42 1.3E-46 257.1 15.4 242 14-291 95-340 (464)
14 KOG0273 Beta-transducin family 100.0 7.9E-40 1.7E-44 249.9 23.5 238 20-294 240-488 (524)
15 KOG0266 WD40 repeat-containing 100.0 1.7E-39 3.8E-44 267.0 27.4 245 21-298 165-420 (456)
16 KOG0263 Transcription initiati 100.0 3.1E-40 6.7E-45 266.7 22.1 205 10-249 443-650 (707)
17 KOG0316 Conserved WD40 repeat- 100.0 3.5E-39 7.5E-44 226.0 23.9 272 11-286 10-297 (307)
18 KOG0284 Polyadenylation factor 100.0 1.4E-40 2.9E-45 249.9 14.8 238 15-288 135-380 (464)
19 KOG0315 G-protein beta subunit 100.0 3.1E-38 6.6E-43 222.9 24.8 251 11-269 33-309 (311)
20 KOG0285 Pleiotropic regulator 100.0 7.8E-39 1.7E-43 237.0 22.5 243 11-290 144-391 (460)
21 KOG0265 U5 snRNP-specific prot 100.0 4.3E-38 9.3E-43 227.7 23.7 273 11-286 40-334 (338)
22 KOG0293 WD40 repeat-containing 100.0 1.5E-38 3.2E-43 239.5 19.9 276 10-289 216-514 (519)
23 KOG0291 WD40-repeat-containing 100.0 3.1E-37 6.7E-42 248.3 28.7 266 19-291 311-615 (893)
24 KOG0319 WD40-repeat-containing 100.0 1.5E-37 3.2E-42 249.5 26.0 277 19-301 109-591 (775)
25 KOG0266 WD40 repeat-containing 100.0 1.8E-37 4E-42 255.0 26.3 239 20-288 208-454 (456)
26 KOG0282 mRNA splicing factor [ 100.0 6.5E-39 1.4E-43 245.7 16.2 245 9-286 205-503 (503)
27 KOG0286 G-protein beta subunit 100.0 1.2E-36 2.7E-41 219.5 26.1 247 49-301 47-317 (343)
28 cd00200 WD40 WD40 domain, foun 100.0 9.9E-36 2.1E-40 233.4 33.0 262 19-286 13-289 (289)
29 KOG0281 Beta-TrCP (transducin 100.0 9.9E-39 2.2E-43 235.9 12.1 224 25-290 205-430 (499)
30 KOG0645 WD40 repeat protein [G 100.0 1.3E-35 2.8E-40 212.0 27.1 247 10-288 6-311 (312)
31 KOG0296 Angio-associated migra 100.0 7.6E-36 1.7E-40 221.4 25.6 270 10-287 98-397 (399)
32 KOG0291 WD40-repeat-containing 100.0 7.9E-36 1.7E-40 240.3 26.8 237 20-289 270-509 (893)
33 KOG0273 Beta-transducin family 100.0 8.1E-36 1.8E-40 228.1 24.7 231 20-287 281-522 (524)
34 KOG0276 Vesicle coat complex C 100.0 3.2E-36 6.9E-41 238.0 22.4 239 19-292 17-261 (794)
35 KOG0283 WD40 repeat-containing 100.0 3.4E-36 7.3E-41 245.3 22.4 237 20-291 272-579 (712)
36 KOG0275 Conserved WD40 repeat- 100.0 8.3E-37 1.8E-41 224.1 15.0 268 15-286 213-507 (508)
37 KOG0318 WD40 repeat stress pro 100.0 5.3E-34 1.1E-38 221.1 30.7 278 12-292 141-521 (603)
38 KOG1407 WD40 repeat protein [F 100.0 7.6E-35 1.6E-39 207.1 23.1 259 15-281 20-293 (313)
39 KOG0285 Pleiotropic regulator 100.0 7.1E-36 1.5E-40 221.4 18.5 217 48-299 142-360 (460)
40 KOG0319 WD40-repeat-containing 100.0 9.9E-36 2.1E-40 239.0 20.8 239 13-286 360-617 (775)
41 PLN00181 protein SPA1-RELATED; 100.0 9E-34 1.9E-38 249.5 34.3 261 19-287 487-792 (793)
42 KOG0643 Translation initiation 100.0 1.5E-34 3.3E-39 206.3 23.1 251 12-290 4-319 (327)
43 KOG0292 Vesicle coat complex C 100.0 7.2E-35 1.6E-39 238.7 24.0 267 20-291 56-324 (1202)
44 KOG0281 Beta-TrCP (transducin 100.0 2.5E-36 5.3E-41 223.3 13.5 237 9-290 228-479 (499)
45 KOG0288 WD40 repeat protein Ti 100.0 7.5E-36 1.6E-40 224.8 16.1 267 17-286 177-459 (459)
46 KOG0292 Vesicle coat complex C 100.0 6.3E-35 1.4E-39 239.1 22.2 244 20-296 14-289 (1202)
47 KOG0647 mRNA export protein (c 100.0 4.1E-34 8.8E-39 207.4 23.8 260 18-281 30-315 (347)
48 KOG0640 mRNA cleavage stimulat 100.0 6.9E-35 1.5E-39 212.5 19.9 239 18-287 115-425 (430)
49 KOG0313 Microtubule binding pr 100.0 2.6E-34 5.7E-39 214.3 22.2 263 27-302 115-392 (423)
50 KOG0296 Angio-associated migra 100.0 3.3E-34 7.2E-39 212.8 22.1 262 9-304 55-373 (399)
51 KOG0278 Serine/threonine kinas 100.0 2.7E-35 5.9E-40 208.3 15.3 244 10-292 51-301 (334)
52 KOG0276 Vesicle coat complex C 100.0 1.4E-34 3E-39 228.8 20.9 225 22-281 62-290 (794)
53 KOG0306 WD40-repeat-containing 100.0 1.7E-33 3.7E-38 226.9 24.4 270 11-289 366-665 (888)
54 KOG0277 Peroxisomal targeting 100.0 2.5E-34 5.5E-39 203.7 17.0 233 21-287 66-308 (311)
55 KOG0277 Peroxisomal targeting 100.0 9.7E-34 2.1E-38 200.8 19.5 240 16-290 9-267 (311)
56 PTZ00420 coronin; Provisional 100.0 2.1E-32 4.6E-37 225.6 30.5 224 33-292 50-297 (568)
57 PTZ00421 coronin; Provisional 100.0 2.1E-32 4.5E-37 224.5 29.8 237 21-292 26-294 (493)
58 KOG0265 U5 snRNP-specific prot 100.0 4.2E-33 9E-38 202.0 22.2 245 49-299 39-308 (338)
59 KOG0305 Anaphase promoting com 100.0 5E-33 1.1E-37 220.9 24.5 237 15-289 217-462 (484)
60 KOG0310 Conserved WD40 repeat- 100.0 8.1E-33 1.7E-37 212.6 23.2 227 19-281 72-300 (487)
61 KOG0289 mRNA splicing factor [ 100.0 4.9E-33 1.1E-37 211.0 21.7 231 25-288 229-460 (506)
62 KOG0282 mRNA splicing factor [ 100.0 8.7E-35 1.9E-39 223.1 12.4 220 47-302 204-477 (503)
63 KOG0295 WD40 repeat-containing 100.0 1.6E-33 3.5E-38 209.1 18.6 245 48-298 99-375 (406)
64 KOG0308 Conserved WD40 repeat- 100.0 1.1E-33 2.3E-38 224.5 18.1 240 25-291 35-286 (735)
65 KOG0645 WD40 repeat protein [G 100.0 4.4E-32 9.5E-37 194.1 24.4 209 48-286 5-223 (312)
66 KOG0294 WD40 repeat-containing 100.0 1E-32 2.2E-37 201.4 21.5 240 12-290 37-283 (362)
67 PTZ00421 coronin; Provisional 100.0 1.1E-31 2.4E-36 220.3 30.1 225 13-271 70-314 (493)
68 KOG0306 WD40-repeat-containing 100.0 3.5E-32 7.6E-37 219.3 26.1 281 20-303 70-596 (888)
69 KOG0313 Microtubule binding pr 100.0 2.2E-32 4.8E-37 204.1 21.5 243 9-286 135-416 (423)
70 cd00200 WD40 WD40 domain, foun 100.0 1.6E-31 3.5E-36 209.5 27.9 244 50-299 2-261 (289)
71 KOG1036 Mitotic spindle checkp 100.0 1.3E-31 2.9E-36 194.9 24.9 259 17-281 15-295 (323)
72 KOG0316 Conserved WD40 repeat- 100.0 1E-31 2.3E-36 188.6 18.5 213 49-300 9-226 (307)
73 KOG0274 Cdc4 and related F-box 100.0 2.2E-31 4.8E-36 218.8 22.8 235 14-292 245-486 (537)
74 KOG0274 Cdc4 and related F-box 100.0 4.2E-31 9E-36 217.3 23.4 229 27-297 218-451 (537)
75 KOG0289 mRNA splicing factor [ 100.0 7.8E-31 1.7E-35 199.2 22.5 243 10-286 253-504 (506)
76 KOG0640 mRNA cleavage stimulat 100.0 8.9E-32 1.9E-36 196.4 15.6 217 51-297 106-345 (430)
77 KOG0283 WD40 repeat-containing 100.0 2.3E-31 4.9E-36 217.3 19.4 214 50-301 259-546 (712)
78 PTZ00420 coronin; Provisional 100.0 1.2E-29 2.5E-34 209.5 29.4 227 11-272 67-318 (568)
79 KOG1407 WD40 repeat protein [F 100.0 1.2E-30 2.6E-35 185.9 20.0 225 51-281 14-252 (313)
80 KOG0310 Conserved WD40 repeat- 100.0 9.7E-31 2.1E-35 201.2 20.7 233 19-289 30-269 (487)
81 KOG0772 Uncharacterized conser 100.0 2.1E-30 4.5E-35 201.0 22.6 271 11-285 160-484 (641)
82 KOG0973 Histone transcription 100.0 2E-30 4.2E-35 217.2 23.0 249 17-294 71-361 (942)
83 KOG0299 U3 snoRNP-associated p 100.0 4.1E-30 8.9E-35 196.5 22.6 234 19-287 206-456 (479)
84 KOG0267 Microtubule severing p 100.0 3.4E-32 7.4E-37 218.5 10.2 224 25-283 38-262 (825)
85 KOG0643 Translation initiation 100.0 1.6E-29 3.5E-34 180.8 21.7 209 52-296 5-229 (327)
86 KOG0973 Histone transcription 100.0 7.5E-30 1.6E-34 213.7 23.2 240 20-291 18-315 (942)
87 KOG0641 WD40 repeat protein [G 100.0 1.1E-28 2.3E-33 172.9 25.3 243 18-288 92-349 (350)
88 KOG0300 WD40 repeat-containing 100.0 3.7E-30 8E-35 188.7 18.5 234 27-296 160-436 (481)
89 KOG0264 Nucleosome remodeling 100.0 7.4E-30 1.6E-34 194.8 20.1 233 21-288 130-404 (422)
90 KOG0305 Anaphase promoting com 100.0 1.3E-29 2.9E-34 201.5 22.3 236 27-300 188-432 (484)
91 PLN00181 protein SPA1-RELATED; 100.0 1.2E-28 2.6E-33 217.3 29.9 224 20-247 537-792 (793)
92 KOG0275 Conserved WD40 repeat- 100.0 6.4E-31 1.4E-35 193.3 12.4 222 19-246 267-507 (508)
93 KOG1332 Vesicle coat complex C 100.0 1.2E-29 2.7E-34 179.1 18.3 234 25-290 21-288 (299)
94 KOG0646 WD40 repeat protein [G 100.0 3.5E-29 7.6E-34 191.7 21.7 233 11-276 77-335 (476)
95 KOG2096 WD40 repeat protein [G 100.0 1.7E-28 3.7E-33 179.8 22.6 269 14-286 82-400 (420)
96 KOG0268 Sof1-like rRNA process 100.0 3.4E-30 7.5E-35 191.5 13.9 246 12-295 60-353 (433)
97 KOG1539 WD repeat protein [Gen 100.0 1.2E-27 2.6E-32 195.4 29.6 256 27-286 172-646 (910)
98 KOG0278 Serine/threonine kinas 100.0 5.7E-30 1.2E-34 181.5 14.0 241 11-289 7-255 (334)
99 KOG0293 WD40 repeat-containing 100.0 3.5E-29 7.6E-34 189.2 18.7 246 49-301 216-484 (519)
100 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 1.6E-26 3.4E-31 182.9 33.7 260 27-292 1-283 (300)
101 KOG0299 U3 snoRNP-associated p 100.0 1.3E-28 2.9E-33 188.3 20.5 235 19-290 146-412 (479)
102 KOG0639 Transducin-like enhanc 100.0 2.2E-29 4.7E-34 195.0 15.5 231 19-287 469-703 (705)
103 KOG1274 WD40 repeat protein [G 100.0 6.9E-28 1.5E-32 198.7 24.0 237 19-289 17-263 (933)
104 KOG0269 WD40 repeat-containing 100.0 7.7E-29 1.7E-33 200.7 18.1 228 21-281 93-331 (839)
105 KOG1408 WD40 repeat protein [F 100.0 1E-28 2.3E-33 198.9 17.9 248 17-291 461-716 (1080)
106 KOG1273 WD40 repeat protein [G 100.0 3.6E-28 7.8E-33 177.9 18.2 265 17-287 25-321 (405)
107 KOG0646 WD40 repeat protein [G 100.0 6.8E-28 1.5E-32 184.7 20.4 238 27-291 50-310 (476)
108 KOG0308 Conserved WD40 repeat- 100.0 3.9E-28 8.5E-33 193.2 18.7 245 10-289 65-328 (735)
109 KOG0641 WD40 repeat protein [G 100.0 3.3E-26 7.1E-31 160.5 25.6 240 19-291 36-306 (350)
110 KOG0301 Phospholipase A2-activ 100.0 4.5E-27 9.7E-32 188.4 22.5 233 12-289 51-289 (745)
111 KOG0288 WD40 repeat protein Ti 100.0 1.3E-27 2.8E-32 180.6 15.9 221 18-245 222-458 (459)
112 KOG0267 Microtubule severing p 100.0 7.7E-29 1.7E-33 199.4 9.7 221 27-288 4-226 (825)
113 KOG0269 WD40 repeat-containing 100.0 2.3E-27 5E-32 192.3 18.2 244 11-290 35-298 (839)
114 KOG1446 Histone H3 (Lys4) meth 100.0 3.9E-25 8.4E-30 162.0 27.6 247 48-297 5-272 (311)
115 KOG0639 Transducin-like enhanc 100.0 1.1E-27 2.3E-32 185.7 14.8 230 21-288 425-663 (705)
116 KOG0302 Ribosome Assembly prot 100.0 1.3E-26 2.8E-31 173.5 19.9 233 21-286 157-436 (440)
117 KOG2445 Nuclear pore complex c 100.0 1.4E-25 2.9E-30 163.8 23.8 256 16-291 11-321 (361)
118 KOG4283 Transcription-coupled 100.0 1.1E-26 2.3E-31 168.8 18.0 193 27-251 56-279 (397)
119 KOG0268 Sof1-like rRNA process 100.0 7.6E-28 1.6E-32 179.2 12.3 232 50-291 59-305 (433)
120 KOG0301 Phospholipase A2-activ 100.0 1.3E-26 2.8E-31 185.9 19.4 237 9-288 5-249 (745)
121 KOG1274 WD40 repeat protein [G 100.0 4.1E-26 8.8E-31 188.4 22.4 231 18-277 57-287 (933)
122 KOG1408 WD40 repeat protein [F 100.0 2.7E-26 5.9E-31 185.1 20.8 282 17-301 80-549 (1080)
123 KOG1445 Tumor-specific antigen 99.9 3.7E-26 8E-31 182.2 20.2 116 174-292 628-754 (1012)
124 KOG0270 WD40 repeat-containing 99.9 5.9E-26 1.3E-30 173.2 20.4 228 27-290 192-451 (463)
125 KOG0264 Nucleosome remodeling 99.9 2.7E-26 5.9E-31 175.4 17.6 207 55-288 122-347 (422)
126 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5.7E-24 1.2E-28 168.3 31.5 243 19-270 34-300 (300)
127 KOG0300 WD40 repeat-containing 99.9 9.7E-27 2.1E-31 170.9 13.8 247 29-288 126-386 (481)
128 KOG2055 WD40 repeat protein [G 99.9 1.3E-25 2.7E-30 172.3 20.4 236 17-287 215-466 (514)
129 KOG0647 mRNA export protein (c 99.9 1.7E-25 3.7E-30 162.9 20.0 240 55-298 25-292 (347)
130 KOG2106 Uncharacterized conser 99.9 9.9E-25 2.1E-29 169.3 25.3 227 20-288 251-521 (626)
131 KOG0302 Ribosome Assembly prot 99.9 5.4E-26 1.2E-30 170.1 17.6 207 55-291 149-381 (440)
132 KOG0772 Uncharacterized conser 99.9 2.4E-26 5.2E-31 178.7 16.2 219 51-289 161-395 (641)
133 KOG4283 Transcription-coupled 99.9 7.9E-26 1.7E-30 164.3 17.2 201 53-289 39-277 (397)
134 KOG0294 WD40 repeat-containing 99.9 6.3E-25 1.4E-29 160.9 21.1 232 29-301 3-251 (362)
135 KOG1332 Vesicle coat complex C 99.9 5.3E-26 1.2E-30 160.8 13.2 205 54-288 8-241 (299)
136 KOG2048 WD40 repeat protein [G 99.9 4E-24 8.7E-29 171.2 25.3 234 20-285 30-270 (691)
137 KOG2919 Guanine nucleotide-bin 99.9 4.3E-25 9.4E-30 162.4 17.8 229 25-287 121-366 (406)
138 KOG4378 Nuclear protein COP1 [ 99.9 2.7E-25 5.9E-30 172.2 17.6 218 20-272 84-305 (673)
139 KOG1034 Transcriptional repres 99.9 1.1E-25 2.3E-30 165.7 14.0 251 27-289 105-382 (385)
140 KOG1273 WD40 repeat protein [G 99.9 2.1E-24 4.5E-29 158.3 20.6 228 60-292 26-284 (405)
141 KOG1539 WD repeat protein [Gen 99.9 6.1E-23 1.3E-27 168.2 29.5 276 13-292 109-610 (910)
142 KOG2106 Uncharacterized conser 99.9 1.3E-22 2.8E-27 157.7 28.1 254 21-289 206-478 (626)
143 KOG0321 WD40 repeat-containing 99.9 2.9E-24 6.3E-29 171.0 19.0 246 21-288 106-391 (720)
144 KOG2096 WD40 repeat protein [G 99.9 4.8E-24 1E-28 156.7 18.0 228 39-290 63-310 (420)
145 KOG2055 WD40 repeat protein [G 99.9 7.4E-24 1.6E-28 162.7 19.1 234 19-287 261-511 (514)
146 KOG0650 WD40 repeat nucleolar 99.9 2.6E-23 5.6E-28 164.7 22.4 272 9-286 391-733 (733)
147 KOG1063 RNA polymerase II elon 99.9 1.7E-23 3.6E-28 168.2 21.6 269 16-290 265-650 (764)
148 KOG2048 WD40 repeat protein [G 99.9 2.3E-22 5E-27 161.3 24.7 240 19-289 73-318 (691)
149 KOG0307 Vesicle coat complex C 99.9 2.8E-24 6E-29 181.6 12.4 236 21-289 70-328 (1049)
150 KOG1036 Mitotic spindle checkp 99.9 4E-22 8.6E-27 145.8 21.8 234 56-297 12-272 (323)
151 KOG0321 WD40 repeat-containing 99.9 2.5E-23 5.5E-28 165.7 16.4 264 27-299 64-360 (720)
152 KOG4328 WD40 protein [Function 99.9 2.1E-22 4.5E-27 154.6 19.8 242 18-291 189-453 (498)
153 KOG4378 Nuclear protein COP1 [ 99.9 6.3E-23 1.4E-27 159.3 16.7 236 19-290 38-280 (673)
154 KOG2919 Guanine nucleotide-bin 99.9 7.2E-22 1.6E-26 145.6 21.1 241 20-289 54-328 (406)
155 KOG0642 Cell-cycle nuclear pro 99.9 7.2E-23 1.6E-27 161.0 16.1 249 13-292 289-565 (577)
156 KOG1538 Uncharacterized conser 99.9 2.3E-22 5E-27 161.7 19.0 260 19-290 16-295 (1081)
157 KOG4328 WD40 protein [Function 99.9 1.1E-22 2.4E-27 156.1 15.7 213 43-288 172-399 (498)
158 KOG1007 WD repeat protein TSSC 99.9 4.6E-22 1E-26 144.4 17.9 235 21-291 69-362 (370)
159 KOG0270 WD40 repeat-containing 99.9 1.6E-22 3.5E-27 154.6 15.9 200 59-294 175-410 (463)
160 KOG0649 WD40 repeat protein [G 99.9 7.8E-21 1.7E-25 134.9 23.0 240 22-302 17-288 (325)
161 KOG0322 G-protein beta subunit 99.9 3.2E-22 6.9E-27 143.4 15.8 251 11-287 7-322 (323)
162 KOG1188 WD40 repeat protein [G 99.9 4.3E-22 9.3E-27 147.6 15.9 225 28-287 41-345 (376)
163 KOG1009 Chromatin assembly com 99.9 4.1E-21 9E-26 145.5 20.1 262 19-293 69-377 (434)
164 KOG0771 Prolactin regulatory e 99.9 9.7E-22 2.1E-26 149.6 15.7 204 16-249 145-355 (398)
165 KOG2445 Nuclear pore complex c 99.9 2.3E-20 4.9E-25 136.8 21.9 213 54-289 10-257 (361)
166 KOG0644 Uncharacterized conser 99.9 1.3E-22 2.8E-27 166.5 10.9 265 13-287 185-465 (1113)
167 PRK11028 6-phosphogluconolacto 99.9 3.6E-19 7.7E-24 142.4 30.1 256 30-289 5-305 (330)
168 KOG1538 Uncharacterized conser 99.9 4.8E-21 1E-25 154.2 19.1 230 59-294 14-258 (1081)
169 KOG0290 Conserved WD40 repeat- 99.9 1.2E-20 2.7E-25 137.2 18.9 232 27-289 59-319 (364)
170 PRK01742 tolB translocation pr 99.9 2.3E-20 5.1E-25 153.6 22.8 225 36-302 183-418 (429)
171 KOG2110 Uncharacterized conser 99.9 1.5E-19 3.3E-24 135.6 24.5 234 21-291 11-251 (391)
172 COG2319 FOG: WD40 repeat [Gene 99.9 4.2E-19 9.2E-24 147.2 29.7 238 19-291 69-317 (466)
173 KOG0771 Prolactin regulatory e 99.9 2.3E-21 5.1E-26 147.5 14.4 198 61-289 148-355 (398)
174 KOG0307 Vesicle coat complex C 99.9 1.4E-21 3.1E-26 165.5 12.5 254 19-304 10-301 (1049)
175 KOG0303 Actin-binding protein 99.9 4.7E-20 1E-24 139.5 18.9 225 13-271 76-320 (472)
176 KOG1517 Guanine nucleotide bin 99.9 1E-19 2.3E-24 153.3 22.8 269 18-291 1067-1384(1387)
177 KOG1007 WD repeat protein TSSC 99.9 1.8E-20 3.9E-25 136.2 15.7 231 29-287 28-288 (370)
178 KOG4227 WD40 repeat protein [G 99.9 1.9E-19 4.2E-24 136.4 21.8 265 18-287 59-386 (609)
179 KOG0303 Actin-binding protein 99.9 2.6E-20 5.6E-25 140.9 16.7 205 51-291 75-297 (472)
180 COG2319 FOG: WD40 repeat [Gene 99.9 2E-18 4.2E-23 143.2 29.5 234 24-291 119-362 (466)
181 KOG1272 WD40-repeat-containing 99.9 1.5E-21 3.4E-26 150.3 9.7 232 15-286 129-360 (545)
182 KOG1063 RNA polymerase II elon 99.9 3.4E-19 7.3E-24 143.8 23.2 257 26-288 24-391 (764)
183 PRK03629 tolB translocation pr 99.9 1.4E-18 3.1E-23 142.7 27.4 227 38-302 180-420 (429)
184 KOG0650 WD40 repeat nucleolar 99.9 5.5E-20 1.2E-24 146.1 18.0 243 50-301 393-652 (733)
185 KOG1523 Actin-related protein 99.9 2.1E-19 4.5E-24 132.5 18.8 231 17-278 12-267 (361)
186 KOG1188 WD40 repeat protein [G 99.9 5.2E-20 1.1E-24 136.7 15.5 191 70-291 41-245 (376)
187 KOG1963 WD40 repeat protein [G 99.8 2.6E-18 5.6E-23 142.2 26.5 272 18-293 208-544 (792)
188 PRK01742 tolB translocation pr 99.8 2.6E-19 5.7E-24 147.4 20.7 210 19-271 207-426 (429)
189 KOG4497 Uncharacterized conser 99.8 2.5E-19 5.4E-24 132.8 17.6 265 20-289 13-392 (447)
190 KOG2110 Uncharacterized conser 99.8 2.6E-18 5.6E-23 129.1 23.0 194 19-249 48-249 (391)
191 KOG0649 WD40 repeat protein [G 99.8 4.5E-18 9.8E-23 121.0 22.9 231 14-278 58-303 (325)
192 KOG2394 WD40 protein DMR-N9 [G 99.8 1.8E-19 3.9E-24 141.5 17.2 227 26-269 134-383 (636)
193 KOG0290 Conserved WD40 repeat- 99.8 3.9E-19 8.4E-24 129.5 17.6 231 16-281 97-357 (364)
194 KOG1587 Cytoplasmic dynein int 99.8 8.5E-19 1.8E-23 144.1 21.7 245 37-287 222-515 (555)
195 KOG1524 WD40 repeat-containing 99.8 1.4E-19 3.1E-24 142.2 15.6 203 27-281 75-277 (737)
196 PRK04922 tolB translocation pr 99.8 4.3E-18 9.3E-23 140.5 24.7 222 37-296 184-419 (433)
197 KOG1034 Transcriptional repres 99.8 3.6E-19 7.8E-24 131.7 16.2 233 28-292 56-341 (385)
198 PRK03629 tolB translocation pr 99.8 6.1E-18 1.3E-22 139.0 25.0 215 19-271 202-428 (429)
199 KOG1523 Actin-related protein 99.8 1.7E-18 3.6E-23 127.8 17.6 205 56-290 9-238 (361)
200 PRK05137 tolB translocation pr 99.8 2.3E-17 5E-22 136.4 26.2 205 38-280 183-396 (435)
201 KOG1009 Chromatin assembly com 99.8 5.2E-19 1.1E-23 134.2 14.6 205 58-281 14-251 (434)
202 PRK02889 tolB translocation pr 99.8 2.3E-17 4.9E-22 135.8 25.5 207 37-281 176-391 (427)
203 KOG1445 Tumor-specific antigen 99.8 9.9E-19 2.2E-23 140.3 15.7 228 25-287 589-843 (1012)
204 KOG1310 WD40 repeat protein [G 99.8 4.4E-19 9.6E-24 139.9 12.4 221 49-291 42-306 (758)
205 KOG2111 Uncharacterized conser 99.8 7.8E-17 1.7E-21 119.0 23.1 234 21-289 11-257 (346)
206 KOG2139 WD40 repeat protein [G 99.8 2.2E-17 4.7E-22 124.0 20.2 223 20-281 103-366 (445)
207 KOG1524 WD40 repeat-containing 99.8 3.4E-18 7.3E-23 134.6 16.3 179 70-288 76-255 (737)
208 PRK11028 6-phosphogluconolacto 99.8 1.2E-16 2.6E-21 127.9 25.4 228 16-268 80-327 (330)
209 KOG2321 WD40 repeat protein [G 99.8 2.7E-17 5.9E-22 130.4 21.1 249 17-290 53-346 (703)
210 PRK04922 tolB translocation pr 99.8 4.4E-17 9.4E-22 134.6 23.2 213 20-270 208-432 (433)
211 KOG1963 WD40 repeat protein [G 99.8 7.8E-17 1.7E-21 133.6 24.1 258 18-281 19-313 (792)
212 PF08662 eIF2A: Eukaryotic tra 99.8 3.3E-17 7.1E-22 119.5 17.4 115 174-296 60-187 (194)
213 KOG2111 Uncharacterized conser 99.8 1E-15 2.2E-20 113.2 25.0 179 37-250 75-258 (346)
214 PRK02889 tolB translocation pr 99.8 1.9E-16 4.1E-21 130.4 23.3 212 20-271 200-425 (427)
215 KOG1334 WD40 repeat protein [G 99.8 6.7E-18 1.4E-22 131.3 13.7 269 13-287 137-465 (559)
216 TIGR02800 propeller_TolB tol-p 99.8 6.9E-16 1.5E-20 127.7 26.7 220 38-295 171-404 (417)
217 PF08662 eIF2A: Eukaryotic tra 99.8 1.1E-16 2.4E-21 116.7 18.8 158 61-256 9-186 (194)
218 KOG1310 WD40 repeat protein [G 99.8 5.8E-18 1.3E-22 133.6 12.6 221 11-255 43-310 (758)
219 PF02239 Cytochrom_D1: Cytochr 99.8 3.9E-15 8.4E-20 119.2 29.0 258 27-289 5-348 (369)
220 KOG0642 Cell-cycle nuclear pro 99.8 9.2E-18 2E-22 132.6 13.6 224 8-260 334-573 (577)
221 KOG0644 Uncharacterized conser 99.8 2.2E-19 4.7E-24 147.9 4.4 211 48-294 181-433 (1113)
222 PRK05137 tolB translocation pr 99.8 5.4E-16 1.2E-20 128.3 24.4 214 19-271 205-433 (435)
223 KOG4227 WD40 repeat protein [G 99.8 7.4E-17 1.6E-21 122.6 16.6 216 51-297 50-283 (609)
224 KOG1272 WD40-repeat-containing 99.8 1.2E-18 2.6E-23 134.6 7.1 198 53-289 125-324 (545)
225 KOG2139 WD40 repeat protein [G 99.8 9.7E-17 2.1E-21 120.6 16.7 206 58-288 99-309 (445)
226 KOG1240 Protein kinase contain 99.8 7.9E-16 1.7E-20 132.1 23.4 239 23-293 1057-1339(1431)
227 KOG0322 G-protein beta subunit 99.8 2.9E-17 6.2E-22 118.3 12.4 147 71-247 166-322 (323)
228 PRK00178 tolB translocation pr 99.8 5E-15 1.1E-19 122.8 27.7 220 38-295 180-413 (430)
229 TIGR02658 TTQ_MADH_Hv methylam 99.8 3.6E-14 7.8E-19 111.1 30.6 249 37-291 27-333 (352)
230 KOG3881 Uncharacterized conser 99.7 8.9E-16 1.9E-20 116.4 19.2 236 28-292 70-324 (412)
231 KOG3881 Uncharacterized conser 99.7 8.7E-16 1.9E-20 116.5 19.1 208 27-271 115-342 (412)
232 KOG2394 WD40 protein DMR-N9 [G 99.7 1.9E-16 4.1E-21 124.8 14.7 170 25-228 183-384 (636)
233 PF10282 Lactonase: Lactonase, 99.7 1.4E-13 3.1E-18 110.4 31.4 245 17-289 38-323 (345)
234 KOG1517 Guanine nucleotide bin 99.7 1.5E-15 3.3E-20 128.7 20.5 232 59-296 1066-1341(1387)
235 KOG2315 Predicted translation 99.7 6.2E-15 1.3E-19 116.9 22.5 263 19-293 38-395 (566)
236 PRK04792 tolB translocation pr 99.7 2.2E-14 4.8E-19 118.6 26.4 221 38-296 199-433 (448)
237 PF02239 Cytochrom_D1: Cytochr 99.7 1.5E-14 3.2E-19 115.9 24.5 232 20-257 41-356 (369)
238 PRK04792 tolB translocation pr 99.7 1.1E-14 2.3E-19 120.5 23.4 212 20-271 222-447 (448)
239 TIGR02800 propeller_TolB tol-p 99.7 1.2E-14 2.6E-19 120.4 23.6 212 20-269 194-417 (417)
240 PRK01029 tolB translocation pr 99.7 3.7E-14 8E-19 116.4 25.7 225 37-295 165-410 (428)
241 KOG1240 Protein kinase contain 99.7 3.1E-15 6.7E-20 128.6 19.3 224 42-290 1034-1275(1431)
242 PRK00178 tolB translocation pr 99.7 2.9E-14 6.3E-19 118.2 24.6 214 20-271 203-428 (430)
243 KOG4497 Uncharacterized conser 99.7 7E-14 1.5E-18 104.3 23.4 254 21-281 54-423 (447)
244 KOG2314 Translation initiation 99.7 2.2E-14 4.7E-19 113.9 21.0 268 16-293 211-578 (698)
245 KOG2321 WD40 repeat protein [G 99.7 6E-14 1.3E-18 111.8 21.0 234 56-294 50-308 (703)
246 KOG1354 Serine/threonine prote 99.7 6.8E-14 1.5E-18 104.9 19.9 240 19-289 29-360 (433)
247 KOG1587 Cytoplasmic dynein int 99.7 1E-14 2.3E-19 120.3 17.1 224 20-249 247-517 (555)
248 KOG4547 WD40 repeat-containing 99.6 4.1E-14 8.8E-19 113.0 19.1 188 67-289 3-221 (541)
249 KOG4547 WD40 repeat-containing 99.6 1.1E-13 2.4E-18 110.6 20.0 188 25-249 3-221 (541)
250 PRK01029 tolB translocation pr 99.6 3E-13 6.5E-18 111.1 23.0 217 21-272 190-426 (428)
251 TIGR02658 TTQ_MADH_Hv methylam 99.6 2.6E-11 5.6E-16 95.3 31.8 226 23-256 53-338 (352)
252 COG2706 3-carboxymuconate cycl 99.6 1.4E-11 3E-16 93.5 27.6 247 16-290 40-323 (346)
253 KOG0974 WD-repeat protein WDR6 99.6 6.8E-14 1.5E-18 118.6 16.1 188 26-249 98-289 (967)
254 KOG1409 Uncharacterized conser 99.6 8.6E-13 1.9E-17 99.0 19.6 233 11-249 17-271 (404)
255 PRK04043 tolB translocation pr 99.6 1.4E-11 3.1E-16 100.7 28.2 218 38-296 170-408 (419)
256 KOG1334 WD40 repeat protein [G 99.6 2.3E-14 4.9E-19 112.0 11.2 211 49-289 134-367 (559)
257 PF10282 Lactonase: Lactonase, 99.6 3.2E-11 7E-16 96.8 28.9 227 18-268 89-345 (345)
258 COG5354 Uncharacterized protei 99.5 3.4E-11 7.4E-16 95.1 25.7 261 20-292 76-399 (561)
259 PRK04043 tolB translocation pr 99.5 1.2E-11 2.7E-16 101.0 24.3 209 19-267 191-418 (419)
260 KOG1064 RAVE (regulator of V-A 99.5 5.4E-14 1.2E-18 125.3 10.8 190 21-257 2214-2407(2439)
261 KOG0974 WD-repeat protein WDR6 99.5 1E-12 2.3E-17 111.6 17.9 191 63-292 93-292 (967)
262 KOG2041 WD40 repeat protein [G 99.5 5.1E-12 1.1E-16 103.9 21.0 255 19-281 18-329 (1189)
263 KOG0280 Uncharacterized conser 99.5 2.2E-12 4.9E-17 94.8 16.3 217 29-280 87-321 (339)
264 COG2706 3-carboxymuconate cycl 99.5 1.4E-10 3E-15 88.2 26.0 236 36-288 15-274 (346)
265 PF08450 SGL: SMP-30/Gluconola 99.5 6.2E-10 1.3E-14 85.3 29.9 219 20-278 4-243 (246)
266 COG4946 Uncharacterized protei 99.5 3E-11 6.4E-16 94.9 22.3 216 23-280 274-508 (668)
267 KOG4532 WD40-like repeat conta 99.5 3.1E-11 6.8E-16 87.9 20.6 234 27-291 84-334 (344)
268 PLN02919 haloacid dehalogenase 99.5 1.6E-10 3.5E-15 104.5 30.1 254 20-292 572-892 (1057)
269 KOG1354 Serine/threonine prote 99.5 2.9E-12 6.2E-17 96.3 15.2 235 57-298 25-313 (433)
270 TIGR03300 assembly_YfgL outer 99.5 1.1E-10 2.4E-15 95.4 24.9 245 26-286 104-375 (377)
271 KOG0280 Uncharacterized conser 99.5 2.8E-11 6E-16 89.2 17.8 223 35-289 44-285 (339)
272 KOG4190 Uncharacterized conser 99.5 2.8E-13 6.2E-18 108.1 8.2 199 50-281 728-938 (1034)
273 KOG4190 Uncharacterized conser 99.4 1.6E-12 3.5E-17 103.9 11.1 213 12-257 729-957 (1034)
274 TIGR03300 assembly_YfgL outer 99.4 1E-09 2.2E-14 89.7 26.1 247 26-288 64-338 (377)
275 COG4946 Uncharacterized protei 99.4 2E-10 4.3E-15 90.4 20.5 192 63-294 272-483 (668)
276 KOG1064 RAVE (regulator of V-A 99.3 8E-12 1.7E-16 112.0 11.2 194 56-296 2207-2407(2439)
277 PF04762 IKI3: IKI3 family; I 99.3 1.6E-09 3.5E-14 96.5 25.2 221 57-288 75-333 (928)
278 COG5354 Uncharacterized protei 99.3 1.2E-09 2.5E-14 86.7 21.4 263 17-291 34-351 (561)
279 KOG2315 Predicted translation 99.3 3.3E-09 7.2E-14 85.1 23.8 241 38-291 12-347 (566)
280 PF04762 IKI3: IKI3 family; I 99.3 5.3E-09 1.2E-13 93.3 27.9 265 21-291 81-459 (928)
281 PF15492 Nbas_N: Neuroblastoma 99.3 8.2E-09 1.8E-13 76.4 23.9 208 22-260 4-271 (282)
282 KOG3914 WD repeat protein WDR4 99.3 6.1E-11 1.3E-15 91.0 12.8 160 60-256 65-231 (390)
283 KOG0882 Cyclophilin-related pe 99.3 9.5E-11 2.1E-15 91.4 13.4 243 27-299 20-316 (558)
284 PLN02919 haloacid dehalogenase 99.3 8.2E-09 1.8E-13 93.8 26.9 222 19-252 627-892 (1057)
285 KOG1409 Uncharacterized conser 99.3 2.9E-10 6.4E-15 85.7 14.7 239 47-293 14-275 (404)
286 COG5170 CDC55 Serine/threonine 99.3 1.8E-10 3.9E-15 85.9 13.4 228 57-291 26-312 (460)
287 KOG2041 WD40 repeat protein [G 99.3 2.9E-10 6.3E-15 93.9 15.4 220 58-281 15-279 (1189)
288 KOG3914 WD repeat protein WDR4 99.3 2.4E-10 5.2E-15 87.8 13.9 164 18-212 65-232 (390)
289 KOG4532 WD40-like repeat conta 99.2 2.7E-09 5.9E-14 78.0 17.7 193 29-249 130-332 (344)
290 KOG2695 WD40 repeat protein [G 99.2 6.4E-11 1.4E-15 89.3 9.1 160 81-270 233-402 (425)
291 KOG2314 Translation initiation 99.2 7.9E-09 1.7E-13 83.0 20.7 241 39-288 192-478 (698)
292 PF13360 PQQ_2: PQQ-like domai 99.2 2.8E-08 6.1E-13 75.9 23.6 222 36-292 2-234 (238)
293 KOG1275 PAB-dependent poly(A) 99.2 4.5E-10 9.8E-15 95.0 14.5 183 26-246 146-340 (1118)
294 COG5170 CDC55 Serine/threonine 99.2 1.4E-09 2.9E-14 81.3 15.1 236 20-286 31-365 (460)
295 KOG1912 WD40 repeat protein [G 99.2 1.1E-08 2.5E-13 85.4 20.4 236 18-287 18-303 (1062)
296 PRK11138 outer membrane biogen 99.2 6.3E-08 1.4E-12 79.6 24.5 248 27-287 120-391 (394)
297 PF07433 DUF1513: Protein of u 99.2 2.2E-07 4.8E-12 71.0 25.1 252 20-287 9-282 (305)
298 KOG0309 Conserved WD40 repeat- 99.2 5.1E-10 1.1E-14 92.7 11.7 236 21-290 73-341 (1081)
299 KOG1645 RING-finger-containing 99.1 1.2E-08 2.6E-13 78.8 17.0 244 39-289 175-462 (463)
300 KOG1832 HIV-1 Vpr-binding prot 99.1 5.2E-11 1.1E-15 100.4 3.9 214 20-279 1106-1320(1516)
301 KOG2695 WD40 repeat protein [G 99.1 5.1E-10 1.1E-14 84.6 8.7 162 31-227 228-401 (425)
302 PF15492 Nbas_N: Neuroblastoma 99.1 8.1E-08 1.8E-12 71.3 19.5 187 20-212 48-268 (282)
303 PF13360 PQQ_2: PQQ-like domai 99.1 8.5E-08 1.9E-12 73.2 20.6 200 23-254 32-236 (238)
304 PF08450 SGL: SMP-30/Gluconola 99.1 3.9E-07 8.5E-12 69.9 23.8 197 62-295 4-220 (246)
305 KOG0309 Conserved WD40 repeat- 99.1 2.7E-09 5.9E-14 88.6 11.9 229 9-272 18-257 (1081)
306 KOG1912 WD40 repeat protein [G 99.1 7.5E-08 1.6E-12 80.7 19.7 101 187-290 439-553 (1062)
307 PF00400 WD40: WD domain, G-be 99.0 8.3E-10 1.8E-14 58.0 5.4 39 92-130 1-39 (39)
308 PRK11138 outer membrane biogen 99.0 5.1E-07 1.1E-11 74.3 24.5 218 26-256 68-320 (394)
309 KOG4714 Nucleoporin [Nuclear s 99.0 3.8E-09 8.3E-14 76.9 10.2 154 23-204 97-255 (319)
310 KOG2066 Vacuolar assembly/sort 99.0 3.5E-08 7.5E-13 82.8 17.1 181 58-288 40-233 (846)
311 KOG1832 HIV-1 Vpr-binding prot 99.0 2.9E-10 6.4E-15 96.0 5.0 196 48-288 1092-1291(1516)
312 PF07433 DUF1513: Protein of u 99.0 1E-06 2.3E-11 67.4 23.5 211 59-302 6-261 (305)
313 KOG1920 IkappaB kinase complex 99.0 1E-07 2.3E-12 83.6 20.1 221 58-288 69-322 (1265)
314 KOG4649 PQQ (pyrrolo-quinoline 99.0 1.6E-06 3.4E-11 63.8 23.0 253 26-289 62-352 (354)
315 KOG2114 Vacuolar assembly/sort 99.0 9.1E-08 2E-12 81.0 18.9 206 63-292 29-247 (933)
316 KOG3617 WD40 and TPR repeat-co 99.0 3.9E-08 8.5E-13 83.2 15.9 112 16-132 16-131 (1416)
317 KOG2114 Vacuolar assembly/sort 99.0 1.5E-07 3.3E-12 79.7 19.0 210 19-257 27-252 (933)
318 KOG0882 Cyclophilin-related pe 99.0 6.2E-08 1.4E-12 76.1 14.7 211 22-256 60-313 (558)
319 PRK02888 nitrous-oxide reducta 98.9 2.8E-07 6.1E-12 77.0 19.3 226 14-280 191-451 (635)
320 PF06433 Me-amine-dh_H: Methyl 98.9 8.2E-06 1.8E-10 63.4 26.9 232 20-259 40-331 (342)
321 KOG4714 Nucleoporin [Nuclear s 98.9 5.9E-09 1.3E-13 75.9 8.4 187 28-249 48-255 (319)
322 PF00400 WD40: WD domain, G-be 98.9 5.4E-09 1.2E-13 54.9 5.5 39 47-88 1-39 (39)
323 KOG1920 IkappaB kinase complex 98.9 1.3E-06 2.8E-11 77.0 22.6 197 20-251 73-325 (1265)
324 PRK02888 nitrous-oxide reducta 98.9 1E-05 2.2E-10 68.0 25.9 250 30-289 69-405 (635)
325 PF11768 DUF3312: Protein of u 98.9 4.6E-06 1E-10 68.4 23.3 136 156-293 188-334 (545)
326 COG0823 TolB Periplasmic compo 98.8 5.6E-07 1.2E-11 73.7 17.2 206 39-281 175-390 (425)
327 PF04841 Vps16_N: Vps16, N-ter 98.8 1.8E-05 3.9E-10 65.1 26.0 226 19-278 32-277 (410)
328 PF06977 SdiA-regulated: SdiA- 98.8 1.2E-05 2.7E-10 60.7 23.0 206 52-279 16-240 (248)
329 KOG2066 Vacuolar assembly/sort 98.8 1.2E-06 2.6E-11 74.0 18.3 177 27-248 49-233 (846)
330 PF00930 DPPIV_N: Dipeptidyl p 98.8 1.3E-05 2.9E-10 64.9 24.2 257 24-290 1-315 (353)
331 KOG1275 PAB-dependent poly(A) 98.8 2.4E-07 5.1E-12 79.1 14.2 179 68-286 146-340 (1118)
332 KOG4649 PQQ (pyrrolo-quinoline 98.8 1.9E-05 4E-10 58.4 21.8 177 27-212 23-215 (354)
333 COG0823 TolB Periplasmic compo 98.8 1.9E-06 4.1E-11 70.6 17.9 181 22-238 199-389 (425)
334 PF06433 Me-amine-dh_H: Methyl 98.7 7.8E-05 1.7E-09 58.2 26.1 253 37-292 17-324 (342)
335 PF04053 Coatomer_WDAD: Coatom 98.7 6.3E-06 1.4E-10 67.8 18.6 177 56-283 31-218 (443)
336 PF00930 DPPIV_N: Dipeptidyl p 98.7 9E-05 2E-09 60.1 25.2 233 16-280 43-347 (353)
337 PF11768 DUF3312: Protein of u 98.6 2.8E-05 6E-10 64.0 20.8 72 172-248 258-329 (545)
338 COG3391 Uncharacterized conser 98.6 0.00012 2.7E-09 59.8 24.5 224 19-271 77-309 (381)
339 PF04053 Coatomer_WDAD: Coatom 98.6 6E-05 1.3E-09 62.2 22.3 224 11-290 28-264 (443)
340 cd00216 PQQ_DH Dehydrogenases 98.6 6.7E-05 1.4E-09 63.5 22.4 200 28-257 111-383 (488)
341 COG3391 Uncharacterized conser 98.6 0.00026 5.7E-09 57.9 26.3 241 18-291 33-286 (381)
342 KOG3621 WD40 repeat-containing 98.6 1.8E-06 4E-11 71.9 12.4 204 56-289 32-245 (726)
343 KOG1645 RING-finger-containing 98.5 7.8E-06 1.7E-10 63.8 14.6 218 21-248 199-461 (463)
344 COG3386 Gluconolactonase [Carb 98.5 0.00022 4.8E-09 55.9 23.5 219 23-279 32-274 (307)
345 PF08596 Lgl_C: Lethal giant l 98.5 0.00031 6.7E-09 57.3 23.8 216 59-281 3-327 (395)
346 KOG1008 Uncharacterized conser 98.5 6.8E-08 1.5E-12 79.3 2.3 198 58-289 57-274 (783)
347 KOG3617 WD40 and TPR repeat-co 98.5 9.8E-06 2.1E-10 69.3 14.5 225 10-238 54-375 (1416)
348 PF03178 CPSF_A: CPSF A subuni 98.5 0.00022 4.8E-09 57.1 21.8 178 37-248 2-202 (321)
349 KOG3621 WD40 repeat-containing 98.4 2.8E-06 6.1E-11 70.8 10.6 166 101-295 32-204 (726)
350 PF02897 Peptidase_S9_N: Proly 98.4 0.00075 1.6E-08 56.2 27.0 235 20-290 128-404 (414)
351 PF08553 VID27: VID27 cytoplas 98.4 1.6E-05 3.4E-10 69.3 15.0 138 81-247 503-646 (794)
352 PF00780 CNH: CNH domain; Int 98.4 0.00051 1.1E-08 53.7 25.8 222 25-292 5-259 (275)
353 PF06977 SdiA-regulated: SdiA- 98.4 0.00048 1E-08 52.2 21.2 201 18-245 24-247 (248)
354 cd00216 PQQ_DH Dehydrogenases 98.4 0.00039 8.5E-09 59.0 21.8 217 27-256 61-327 (488)
355 KOG1008 Uncharacterized conser 98.3 1.8E-07 3.9E-12 76.9 0.4 190 27-248 70-275 (783)
356 PF08553 VID27: VID27 cytoplas 98.2 5.8E-05 1.2E-09 65.9 14.8 99 187-287 544-646 (794)
357 PF03178 CPSF_A: CPSF A subuni 98.2 0.00079 1.7E-08 54.0 19.9 182 27-245 42-262 (321)
358 KOG4640 Anaphase-promoting com 98.2 1.3E-05 2.9E-10 66.1 9.2 93 174-270 21-115 (665)
359 PRK13616 lipoprotein LpqB; Pro 98.1 0.00061 1.3E-08 58.7 18.4 210 36-271 328-551 (591)
360 KOG4640 Anaphase-promoting com 98.1 2.6E-05 5.7E-10 64.5 8.6 96 13-112 18-115 (665)
361 PF02897 Peptidase_S9_N: Proly 98.1 0.0049 1.1E-07 51.4 23.7 203 59-292 125-362 (414)
362 COG3386 Gluconolactonase [Carb 98.1 0.0034 7.3E-08 49.4 20.4 202 63-298 30-253 (307)
363 TIGR03074 PQQ_membr_DH membran 98.1 0.0069 1.5E-07 53.9 23.7 214 27-256 194-485 (764)
364 smart00320 WD40 WD40 repeats. 98.0 1.7E-05 3.8E-10 40.7 4.9 38 93-130 3-40 (40)
365 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.0068 1.5E-07 51.9 24.2 109 27-141 69-198 (527)
366 PF14583 Pectate_lyase22: Olig 98.0 0.0039 8.5E-08 49.9 19.4 244 23-281 43-303 (386)
367 PRK13616 lipoprotein LpqB; Pro 98.0 0.001 2.2E-08 57.4 17.4 105 176-287 399-524 (591)
368 KOG1897 Damage-specific DNA bi 98.0 0.01 2.2E-07 52.6 28.8 263 23-290 495-858 (1096)
369 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.0082 1.8E-07 51.4 24.5 62 194-259 440-501 (527)
370 PF14783 BBS2_Mid: Ciliary BBS 98.0 0.0016 3.4E-08 42.1 13.6 65 60-131 2-70 (111)
371 PF14783 BBS2_Mid: Ciliary BBS 98.0 0.0016 3.4E-08 42.1 13.5 100 105-243 2-109 (111)
372 KOG2079 Vacuolar assembly/sort 97.9 3.2E-05 6.9E-10 67.9 7.5 106 184-291 98-206 (1206)
373 KOG2079 Vacuolar assembly/sort 97.9 0.00035 7.7E-09 61.7 13.3 102 26-132 98-203 (1206)
374 PF08596 Lgl_C: Lethal giant l 97.9 0.00055 1.2E-08 55.9 13.8 144 104-248 3-173 (395)
375 PF05096 Glu_cyclase_2: Glutam 97.8 0.0075 1.6E-07 45.8 21.6 194 60-288 47-259 (264)
376 smart00320 WD40 WD40 repeats. 97.8 6.8E-05 1.5E-09 38.3 4.8 39 47-88 2-40 (40)
377 COG3204 Uncharacterized protei 97.8 0.0083 1.8E-07 45.8 18.6 201 53-276 81-299 (316)
378 PF05096 Glu_cyclase_2: Glutam 97.8 0.0082 1.8E-07 45.6 22.3 184 21-236 50-249 (264)
379 PF04841 Vps16_N: Vps16, N-ter 97.8 0.0048 1E-07 51.1 17.4 51 83-135 62-112 (410)
380 PF00780 CNH: CNH domain; Int 97.8 0.01 2.2E-07 46.4 21.0 158 67-253 5-170 (275)
381 PF14583 Pectate_lyase22: Olig 97.8 0.0065 1.4E-07 48.7 17.0 220 43-277 16-254 (386)
382 PF05694 SBP56: 56kDa selenium 97.8 0.015 3.3E-07 47.3 24.1 227 27-280 87-393 (461)
383 KOG4441 Proteins containing BT 97.7 0.013 2.8E-07 50.7 19.5 228 25-291 283-549 (571)
384 KOG2395 Protein involved in va 97.7 0.0015 3.2E-08 53.6 12.4 150 67-248 343-500 (644)
385 KOG2444 WD40 repeat protein [G 97.7 0.00012 2.7E-09 53.1 5.7 136 81-249 39-178 (238)
386 PF10647 Gmad1: Lipoprotein Lp 97.7 0.015 3.3E-07 44.7 19.8 146 104-281 25-186 (253)
387 KOG2395 Protein involved in va 97.7 0.0017 3.6E-08 53.3 12.3 139 117-287 349-499 (644)
388 PHA02713 hypothetical protein; 97.7 0.0047 1E-07 53.3 16.0 65 184-251 463-536 (557)
389 PHA02713 hypothetical protein; 97.6 0.014 2.9E-07 50.6 18.6 91 196-291 433-536 (557)
390 COG3490 Uncharacterized protei 97.6 0.0068 1.5E-07 46.0 13.3 197 22-247 120-347 (366)
391 PHA03098 kelch-like protein; P 97.5 0.02 4.4E-07 49.5 17.4 189 26-250 294-513 (534)
392 PF05694 SBP56: 56kDa selenium 97.4 0.044 9.6E-07 44.7 20.6 202 19-237 133-392 (461)
393 COG3204 Uncharacterized protei 97.4 0.031 6.8E-07 42.8 16.3 155 99-281 82-253 (316)
394 PF12894 Apc4_WD40: Anaphase-p 97.4 0.00068 1.5E-08 36.5 5.0 35 217-252 10-44 (47)
395 PF15390 DUF4613: Domain of un 97.4 0.057 1.2E-06 45.5 17.9 160 58-248 20-186 (671)
396 PF14655 RAB3GAP2_N: Rab3 GTPa 97.4 0.055 1.2E-06 44.5 24.6 83 172-257 306-407 (415)
397 PF14870 PSII_BNR: Photosynthe 97.4 0.045 9.8E-07 43.0 23.0 149 99-281 141-296 (302)
398 KOG2444 WD40 repeat protein [G 97.3 0.001 2.2E-08 48.6 6.5 111 21-134 64-179 (238)
399 PF10647 Gmad1: Lipoprotein Lp 97.2 0.059 1.3E-06 41.5 21.6 153 59-240 25-187 (253)
400 PF12894 Apc4_WD40: Anaphase-p 97.2 0.0018 4E-08 34.8 5.4 34 173-207 11-44 (47)
401 KOG2280 Vacuolar assembly/sort 97.2 0.071 1.5E-06 46.2 17.0 201 19-230 36-271 (829)
402 PHA02790 Kelch-like protein; P 97.2 0.088 1.9E-06 44.9 18.1 186 25-250 270-472 (480)
403 PF12234 Rav1p_C: RAVE protein 97.2 0.029 6.3E-07 48.4 14.9 115 174-290 30-158 (631)
404 COG3490 Uncharacterized protei 97.2 0.011 2.4E-07 45.0 10.8 109 176-285 70-186 (366)
405 KOG4499 Ca2+-binding protein R 97.1 0.06 1.3E-06 39.9 16.5 140 58-228 109-263 (310)
406 PF14870 PSII_BNR: Photosynthe 97.1 0.1 2.2E-06 41.1 22.3 159 56-245 143-301 (302)
407 KOG4499 Ca2+-binding protein R 97.0 0.075 1.6E-06 39.4 17.7 96 176-271 160-264 (310)
408 PRK10115 protease 2; Provision 97.0 0.21 4.6E-06 44.6 28.3 112 19-132 130-255 (686)
409 COG3823 Glutamine cyclotransfe 97.0 0.08 1.7E-06 38.5 15.7 181 26-236 55-247 (262)
410 PF12234 Rav1p_C: RAVE protein 97.0 0.099 2.1E-06 45.3 15.8 113 105-247 32-155 (631)
411 PHA03098 kelch-like protein; P 96.9 0.18 3.9E-06 43.8 17.2 102 184-290 389-513 (534)
412 KOG3630 Nuclear pore complex, 96.8 0.021 4.6E-07 51.6 11.2 147 58-236 101-261 (1405)
413 COG3823 Glutamine cyclotransfe 96.8 0.12 2.5E-06 37.7 12.7 180 68-281 55-249 (262)
414 TIGR02604 Piru_Ver_Nterm putat 96.8 0.24 5.1E-06 40.7 17.0 103 175-281 73-204 (367)
415 KOG4441 Proteins containing BT 96.7 0.28 6.1E-06 42.7 17.2 190 26-250 332-548 (571)
416 COG4257 Vgb Streptogramin lyas 96.6 0.2 4.4E-06 38.2 20.0 241 19-295 65-312 (353)
417 PF15390 DUF4613: Domain of un 96.5 0.15 3.3E-06 43.2 13.5 114 174-288 57-184 (671)
418 COG5167 VID27 Protein involved 96.5 0.087 1.9E-06 43.7 11.5 61 229-289 572-633 (776)
419 PF14761 HPS3_N: Hermansky-Pud 96.4 0.24 5.2E-06 36.5 12.5 103 186-292 29-167 (215)
420 PF13449 Phytase-like: Esteras 96.4 0.39 8.5E-06 38.7 16.6 117 175-292 86-253 (326)
421 TIGR02604 Piru_Ver_Nterm putat 96.4 0.39 8.5E-06 39.4 15.3 151 59-237 15-202 (367)
422 KOG2377 Uncharacterized conser 96.4 0.093 2E-06 42.9 11.0 107 172-280 65-173 (657)
423 PF07995 GSDH: Glucose / Sorbo 96.3 0.45 9.7E-06 38.4 26.6 225 17-243 3-330 (331)
424 PF08728 CRT10: CRT10; InterP 96.2 0.4 8.7E-06 42.3 14.7 74 174-247 164-245 (717)
425 PF07569 Hira: TUP1-like enhan 96.2 0.065 1.4E-06 40.2 8.9 76 14-93 9-98 (219)
426 KOG1897 Damage-specific DNA bi 96.1 1.1 2.4E-05 40.7 23.7 254 26-288 594-898 (1096)
427 PRK10115 protease 2; Provision 96.0 1 2.3E-05 40.4 24.0 74 59-134 128-209 (686)
428 PF10433 MMS1_N: Mono-function 96.0 0.89 1.9E-05 39.2 24.4 239 24-270 219-503 (504)
429 PF10313 DUF2415: Uncharacteri 96.0 0.044 9.6E-07 28.6 5.1 30 175-204 2-34 (43)
430 TIGR03074 PQQ_membr_DH membran 96.0 1.2 2.6E-05 40.3 21.6 202 69-290 194-477 (764)
431 PF14761 HPS3_N: Hermansky-Pud 96.0 0.43 9.3E-06 35.2 15.3 163 70-247 29-213 (215)
432 KOG3630 Nuclear pore complex, 95.9 0.1 2.2E-06 47.6 10.0 109 20-132 105-228 (1405)
433 PF13449 Phytase-like: Esteras 95.9 0.73 1.6E-05 37.1 17.1 160 58-235 20-231 (326)
434 PF10313 DUF2415: Uncharacteri 95.9 0.054 1.2E-06 28.3 5.1 31 103-133 1-34 (43)
435 PF08728 CRT10: CRT10; InterP 95.8 0.75 1.6E-05 40.7 14.5 110 175-288 102-244 (717)
436 KOG2280 Vacuolar assembly/sort 95.7 1.3 2.8E-05 39.0 18.2 186 81-273 63-272 (829)
437 COG5167 VID27 Protein involved 95.7 0.4 8.6E-06 40.1 11.8 146 66-248 476-632 (776)
438 PF07569 Hira: TUP1-like enhan 95.5 0.15 3.3E-06 38.2 8.6 68 180-248 17-95 (219)
439 PHA02790 Kelch-like protein; P 95.4 1.5 3.2E-05 37.6 15.0 105 25-136 317-427 (480)
440 KOG2247 WD40 repeat-containing 95.3 0.0026 5.7E-08 51.8 -1.4 112 22-139 41-154 (615)
441 PF14781 BBS2_N: Ciliary BBSom 95.2 0.57 1.2E-05 31.6 11.5 108 179-292 4-129 (136)
442 KOG2377 Uncharacterized conser 95.2 0.29 6.2E-06 40.2 9.5 121 177-300 26-154 (657)
443 COG5290 IkappaB kinase complex 95.2 0.99 2.1E-05 40.0 13.1 110 177-288 250-366 (1243)
444 TIGR02276 beta_rpt_yvtn 40-res 95.2 0.15 3.3E-06 26.4 5.7 41 228-269 1-42 (42)
445 PF14655 RAB3GAP2_N: Rab3 GTPa 95.1 0.51 1.1E-05 39.1 10.9 87 53-142 303-408 (415)
446 KOG2247 WD40 repeat-containing 95.1 0.0032 7E-08 51.3 -1.5 144 104-281 36-180 (615)
447 PF10168 Nup88: Nuclear pore c 95.0 1.9 4.1E-05 38.8 14.9 76 174-250 85-181 (717)
448 COG4590 ABC-type uncharacteriz 94.8 0.19 4E-06 41.3 7.4 168 53-253 216-391 (733)
449 PF07250 Glyoxal_oxid_N: Glyox 94.7 0.97 2.1E-05 34.5 10.8 151 39-212 48-206 (243)
450 PF07995 GSDH: Glucose / Sorbo 94.7 1.9 4.1E-05 34.9 14.5 26 104-130 3-28 (331)
451 TIGR03606 non_repeat_PQQ dehyd 94.7 2.3 5.1E-05 35.8 18.8 33 102-134 29-61 (454)
452 PLN02193 nitrile-specifier pro 94.6 2.5 5.5E-05 36.1 20.4 66 184-251 328-413 (470)
453 KOG4460 Nuclear pore complex, 94.5 1.4 3E-05 37.2 11.7 79 175-253 105-203 (741)
454 KOG1916 Nuclear protein, conta 94.2 0.13 2.8E-06 45.8 5.8 171 54-253 129-328 (1283)
455 KOG1900 Nuclear pore complex, 94.2 0.68 1.5E-05 43.2 10.4 160 34-204 96-273 (1311)
456 PF03022 MRJP: Major royal jel 94.2 2.3 4.9E-05 33.6 18.6 182 83-278 35-253 (287)
457 TIGR02276 beta_rpt_yvtn 40-res 94.1 0.4 8.7E-06 24.8 6.4 30 183-212 1-31 (42)
458 PRK13684 Ycf48-like protein; P 94.1 2.7 5.8E-05 34.1 23.1 110 174-286 215-329 (334)
459 TIGR03606 non_repeat_PQQ dehyd 94.0 3.3 7.2E-05 34.9 15.6 107 172-280 28-165 (454)
460 PF11715 Nup160: Nucleoporin N 94.0 0.64 1.4E-05 40.6 9.9 74 183-256 156-256 (547)
461 PF14781 BBS2_N: Ciliary BBSom 93.6 1.5 3.2E-05 29.7 11.0 119 107-253 3-130 (136)
462 KOG1983 Tomosyn and related SN 93.6 5.2 0.00011 37.7 14.9 32 14-45 34-65 (993)
463 PRK13684 Ycf48-like protein; P 93.4 3.6 7.9E-05 33.3 24.1 110 173-287 172-286 (334)
464 PF05935 Arylsulfotrans: Aryls 93.3 4.8 0.0001 34.5 16.5 176 27-212 115-310 (477)
465 KOG1900 Nuclear pore complex, 93.2 5.5 0.00012 37.7 14.2 164 59-249 80-273 (1311)
466 KOG1916 Nuclear protein, conta 93.2 0.15 3.2E-06 45.4 4.5 107 27-137 195-328 (1283)
467 PLN02153 epithiospecifier prot 93.1 4.1 8.9E-05 33.1 22.6 66 26-94 32-113 (341)
468 PF08801 Nucleoporin_N: Nup133 93.0 4.9 0.00011 33.8 15.5 31 219-249 190-220 (422)
469 COG5276 Uncharacterized conser 93.0 3.6 7.7E-05 32.2 23.3 104 27-137 96-204 (370)
470 KOG3616 Selective LIM binding 92.9 1.8 3.8E-05 38.4 10.2 35 102-136 14-48 (1636)
471 COG4590 ABC-type uncharacteriz 92.8 0.69 1.5E-05 38.1 7.4 169 98-291 216-389 (733)
472 PF07676 PD40: WD40-like Beta 92.7 0.63 1.4E-05 23.7 4.9 30 56-87 7-38 (39)
473 PF03022 MRJP: Major royal jel 92.5 4.5 9.6E-05 32.0 18.9 182 38-236 35-253 (287)
474 COG1520 FOG: WD40-like repeat 92.4 5.5 0.00012 32.8 21.5 199 28-258 69-278 (370)
475 PF10168 Nup88: Nuclear pore c 92.2 8.6 0.00019 34.8 22.4 74 58-135 85-182 (717)
476 PF11715 Nup160: Nucleoporin N 92.2 2.3 5E-05 37.2 10.6 72 67-141 156-257 (547)
477 smart00036 CNH Domain found in 91.9 5.5 0.00012 31.8 27.2 220 27-258 13-280 (302)
478 PF03088 Str_synth: Strictosid 91.8 2.1 4.5E-05 26.8 7.8 42 191-236 33-74 (89)
479 PF07250 Glyoxal_oxid_N: Glyox 91.8 4.7 0.0001 30.8 12.0 117 179-296 72-206 (243)
480 PF05935 Arylsulfotrans: Aryls 91.6 8.1 0.00018 33.2 14.4 115 179-297 153-310 (477)
481 PLN00033 photosystem II stabil 91.5 7.2 0.00016 32.5 21.8 151 60-245 241-396 (398)
482 PF12657 TFIIIC_delta: Transcr 91.2 2.9 6.3E-05 30.1 8.6 31 103-133 86-122 (173)
483 PF12657 TFIIIC_delta: Transcr 90.1 3.1 6.8E-05 30.0 7.9 31 174-204 86-122 (173)
484 TIGR03118 PEPCTERM_chp_1 conse 89.9 8.4 0.00018 30.4 24.2 232 21-270 28-307 (336)
485 TIGR03548 mutarot_permut cycli 89.9 9.1 0.0002 30.8 21.4 25 183-207 170-198 (323)
486 PF10214 Rrn6: RNA polymerase 89.8 16 0.00035 33.6 16.9 121 173-294 79-238 (765)
487 TIGR03548 mutarot_permut cycli 89.8 9.3 0.0002 30.8 17.3 109 26-136 72-198 (323)
488 COG1520 FOG: WD40-like repeat 89.8 10 0.00022 31.3 15.4 151 71-255 70-224 (370)
489 TIGR02171 Fb_sc_TIGR02171 Fibr 89.7 4 8.6E-05 37.3 9.5 85 186-274 320-412 (912)
490 PF11635 Med16: Mediator compl 89.7 16 0.00035 33.5 18.9 71 173-243 259-345 (753)
491 PF12768 Rax2: Cortical protei 89.5 8.8 0.00019 30.2 10.3 76 174-249 37-124 (281)
492 PF08801 Nucleoporin_N: Nup133 89.3 12 0.00026 31.5 13.8 32 174-205 190-221 (422)
493 PF10214 Rrn6: RNA polymerase 89.3 18 0.00038 33.4 20.3 115 174-289 146-277 (765)
494 TIGR03547 muta_rot_YjhT mutatr 88.7 12 0.00026 30.5 21.0 68 26-94 17-97 (346)
495 PLN02153 epithiospecifier prot 88.6 12 0.00026 30.5 17.8 69 26-94 85-171 (341)
496 PRK13615 lipoprotein LpqB; Pro 88.3 17 0.00037 31.8 16.7 139 106-278 337-487 (557)
497 smart00564 PQQ beta-propeller 88.2 1.5 3.3E-05 21.1 3.8 25 187-211 8-32 (33)
498 KOG4460 Nuclear pore complex, 88.1 16 0.00034 31.3 13.6 94 104-208 105-203 (741)
499 KOG1898 Splicing factor 3b, su 88.1 15 0.00032 34.3 11.8 93 176-268 540-640 (1205)
500 PF14727 PHTB1_N: PTHB1 N-term 88.0 15 0.00032 30.9 24.9 141 27-202 37-203 (418)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-51 Score=306.80 Aligned_cols=273 Identities=24% Similarity=0.402 Sum_probs=236.8
Q ss_pred ccceeeeecceee---EeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCce
Q 036585 8 REDKVSLELSEEI---LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 84 (304)
Q Consensus 8 ~~~~~~~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i 84 (304)
..+...+.+|.+. ++|+|+|.+|++|+.|.++|+||+.+..+..+.++|..-|.|++|+||++.|++|+. ||+|
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~---dg~I 181 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSK---DGSI 181 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhcccc---CCeE
Confidence 3445567778775 578899999999999999999999999999999999999999999999999999999 9999
Q ss_pred EEEEccCcee-eeecccccccEEEEEEcC-----CCCEEEEcccCCeEEEEeCCcceeeceEEEeccc--eeEecCCCeE
Q 036585 85 RLLSLHDNKY-SRYFKGHHDRVVLLSLCS-----SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLV 156 (304)
Q Consensus 85 ~vwd~~~~~~-~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~ 156 (304)
++||..++++ ...+.+|...|++++|.| ..++|++++.||.++|||+..++++..+..+..+ ++.+..++.+
T Consensus 182 ~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gli 261 (480)
T KOG0271|consen 182 RLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLI 261 (480)
T ss_pred EEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceE
Confidence 9999998875 467899999999999985 5679999999999999999888776665433322 2233333322
Q ss_pred E-------------------------------------------------------------------------------
Q 036585 157 F------------------------------------------------------------------------------- 157 (304)
Q Consensus 157 ~------------------------------------------------------------------------------- 157 (304)
+
T Consensus 262 ySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVS 341 (480)
T KOG0271|consen 262 YSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVS 341 (480)
T ss_pred EecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEE
Confidence 2
Q ss_pred EecCCCeEEEEe----------cCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEc
Q 036585 158 GYEKGPLDIFSV----------GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS 227 (304)
Q Consensus 158 ~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s 227 (304)
+.++..+.+|+. .+|+..|+.+.||||++++++++.|..|++||.++|+.+.++. +|-..|+.++|+
T Consensus 342 gsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfR---GHv~~VYqvaws 418 (480)
T KOG0271|consen 342 GSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFR---GHVAAVYQVAWS 418 (480)
T ss_pred ecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhh---hccceeEEEEec
Confidence 444555555542 2477889999999999999999999999999999999999999 899999999999
Q ss_pred CCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEec
Q 036585 228 PEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWI 286 (304)
Q Consensus 228 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~ 286 (304)
.|.++|++|+.|.++++||+++.+....+++|...|.++.|+|||..+++|+.| +++|.
T Consensus 419 aDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 419 ADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred cCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999999999999999999999999999999999999 88884
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.4e-50 Score=301.35 Aligned_cols=250 Identities=21% Similarity=0.297 Sum_probs=234.3
Q ss_pred eeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccC--CCeEEEEecCCCCCceEEEEccCceeee
Q 036585 19 EILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH--PTTVIYSSKNGWDESLRLLSLHDNKYSR 96 (304)
Q Consensus 19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~~d~~i~vwd~~~~~~~~ 96 (304)
..+.++.+++.|+|||.+|.++||+..+...++++.+|...+.++.|+|. +..+++++. ||++++|++.+..++.
T Consensus 179 s~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~---Dgtvklw~~~~e~~l~ 255 (459)
T KOG0272|consen 179 SGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASA---DGTVKLWKLSQETPLQ 255 (459)
T ss_pred eeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeecc---CCceeeeccCCCcchh
Confidence 45788999999999999999999999999999999999999999999997 568999998 9999999999999999
Q ss_pred ecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCc
Q 036585 97 YFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDA 176 (304)
Q Consensus 97 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 176 (304)
.+.+|...|..++|+|+|++|++++.|.+-++||++++....... +|...|
T Consensus 256 ~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QE-----------------------------GHs~~v 306 (459)
T KOG0272|consen 256 DLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQE-----------------------------GHSKGV 306 (459)
T ss_pred hhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhc-----------------------------cccccc
Confidence 999999999999999999999999999999999999987765543 788999
Q ss_pred eEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeee
Q 036585 177 NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASW 256 (304)
Q Consensus 177 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 256 (304)
.+++|.|||.++++|+.|..-+|||++++.++..+. +|..+|.+++|+|+|..||+|+.|++++|||++..+++..+
T Consensus 307 ~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~---gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~i 383 (459)
T KOG0272|consen 307 FSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA---GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTI 383 (459)
T ss_pred ceeEecCCCceeeccCccchhheeecccCcEEEEec---ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceec
Confidence 999999999999999999999999999999999999 79999999999999999999999999999999999999999
Q ss_pred eccCCCCceEEeCC-CCcEEEEecCc--eEEeccC-CccccccccCCCCCC
Q 036585 257 MSFDTEPPVIKWAP-GSLMFVTGSSE--LSFWIPD-LSKLGAYVGRNRGCM 303 (304)
Q Consensus 257 ~~~~~~i~~~~~~~-~~~~l~s~~~d--~~iw~~~-~~~~~~~~~~~~g~~ 303 (304)
++|..-|+.++|+| .|.+|+|++.| ++||... -..++.+.||+..++
T Consensus 384 pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~ 434 (459)
T KOG0272|consen 384 PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVI 434 (459)
T ss_pred ccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceE
Confidence 99999999999999 78999999999 9999875 467889999986543
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.6e-48 Score=293.42 Aligned_cols=247 Identities=23% Similarity=0.313 Sum_probs=231.1
Q ss_pred cccccceeeeeccee---eEeeccc--CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCC
Q 036585 5 QSEREDKVSLELSEE---ILQSMEV--GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG 79 (304)
Q Consensus 5 ~~~~~~~~~~~~~~~---~i~~~~~--~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~ 79 (304)
.+.....+.+.+|.. .+.|.|. +..|||++.||++++|++.+..++..+.+|...|..++|+|+|++|++++.
T Consensus 204 ~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~Tasf-- 281 (459)
T KOG0272|consen 204 VPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASF-- 281 (459)
T ss_pred cCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeeccc--
Confidence 344567788888865 4678887 679999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEe
Q 036585 80 WDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGY 159 (304)
Q Consensus 80 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (304)
|.+-++||+++++.+....+|...|.+++|+|||.++++|+.|..-+|||+++++++..+.
T Consensus 282 -D~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~------------------ 342 (459)
T KOG0272|consen 282 -DSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA------------------ 342 (459)
T ss_pred -ccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEec------------------
Confidence 9999999999999999899999999999999999999999999999999999999877665
Q ss_pred cCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcC-CCcEEEEecC
Q 036585 160 EKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-EGMFVISGSG 238 (304)
Q Consensus 160 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~ 238 (304)
+|..+|..++|+|+|..|++|+.|++++|||++..+.+.++. .|.+-|+.++|+| .|.+|++++.
T Consensus 343 -----------gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip---AH~nlVS~Vk~~p~~g~fL~Tasy 408 (459)
T KOG0272|consen 343 -----------GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP---AHSNLVSQVKYSPQEGYFLVTASY 408 (459)
T ss_pred -----------ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecc---cccchhhheEecccCCeEEEEccc
Confidence 788899999999999999999999999999999988877777 7999999999999 7889999999
Q ss_pred CCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEec
Q 036585 239 DGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWI 286 (304)
Q Consensus 239 dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~ 286 (304)
|++++||...+..+++.+.+|.+.|.++..+||+.++++++.| +++|.
T Consensus 409 D~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 409 DNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999999999999999999999999999999 99995
No 4
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6e-46 Score=261.76 Aligned_cols=268 Identities=19% Similarity=0.333 Sum_probs=237.0
Q ss_pred CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCce--eeeeccccccc
Q 036585 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK--YSRYFKGHHDR 104 (304)
Q Consensus 27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~ 104 (304)
.-+|++++.|-+||+|...+|.+..+++.....|+.+...|+++.|++++ ...|++||+++++ ++.++.+|+..
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~----~qhvRlyD~~S~np~Pv~t~e~h~kN 85 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG----NQHVRLYDLNSNNPNPVATFEGHTKN 85 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc----CCeeEEEEccCCCCCceeEEeccCCc
Confidence 35899999999999999999999999998889999999999999999998 7899999999865 68899999999
Q ss_pred EEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecc-ceeEecCC--CeEEEecCCCeEEEEecCC---------
Q 036585 105 VVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAYDDQ--GLVFGYEKGPLDIFSVGGD--------- 172 (304)
Q Consensus 105 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~--------- 172 (304)
|+++.|..+|+.+++|+.||+++|||++...+.+.+..... ..+...|+ .++.+..++.+.+|++..+
T Consensus 86 VtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe 165 (311)
T KOG0315|consen 86 VTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPE 165 (311)
T ss_pred eEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCC
Confidence 99999999999999999999999999999888887776533 34556655 3677888999999999865
Q ss_pred -CCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCc------eeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEE
Q 036585 173 -ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT------LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAW 245 (304)
Q Consensus 173 -~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~ 245 (304)
...|.++...|||..++.+...|..++|++-+.+ ++..++ .|.+.+..+.+|||+++||+++.|.+++||
T Consensus 166 ~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~---ah~~~il~C~lSPd~k~lat~ssdktv~iw 242 (311)
T KOG0315|consen 166 DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQ---AHNGHILRCLLSPDVKYLATCSSDKTVKIW 242 (311)
T ss_pred CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhee---cccceEEEEEECCCCcEEEeecCCceEEEE
Confidence 3578999999999999999999999999987643 333344 688999999999999999999999999999
Q ss_pred ecCCC-ceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCc-cccccccCCCC
Q 036585 246 SVRSG-KEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLS-KLGAYVGRNRG 301 (304)
Q Consensus 246 d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~-~~~~~~~~~~g 301 (304)
+..+. +.-..+.+|...++..+||.||+||++|+.| .++|++... +++++.+|+++
T Consensus 243 n~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~ 302 (311)
T KOG0315|consen 243 NTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKA 302 (311)
T ss_pred ecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccc
Confidence 99887 6667779999999999999999999999999 999999764 57899998875
No 5
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.9e-44 Score=289.86 Aligned_cols=236 Identities=19% Similarity=0.319 Sum_probs=219.6
Q ss_pred eeEeecccCcEEEEeeCCCeEEEEecCCc-------------------------------ceeeeecccccceeEEEEcc
Q 036585 19 EILQSMEVGIYLVTASDDESIRLYDVTAA-------------------------------TCLKTINSKKYGVDLVCFTS 67 (304)
Q Consensus 19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~-------------------------------~~~~~~~~~~~~v~~~~~~~ 67 (304)
.+..++.++.+||.|-.|..|++|.+... ....++.+|.++|....|+|
T Consensus 382 ~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP 461 (707)
T KOG0263|consen 382 TCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP 461 (707)
T ss_pred eeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecc
Confidence 34567888999999999999999998631 12245779999999999999
Q ss_pred CCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccce
Q 036585 68 HPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA 147 (304)
Q Consensus 68 ~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 147 (304)
+.++|++++. |+++|+|.+.+...+..+++|..||+.+.|+|.|-+|++++.|++.++|......+.+.+.
T Consensus 462 d~rfLlScSE---D~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifa------ 532 (707)
T KOG0263|consen 462 DRRFLLSCSE---DSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFA------ 532 (707)
T ss_pred cccceeeccC---CcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhc------
Confidence 9999999999 9999999999999999999999999999999999999999999999999999888777765
Q ss_pred eEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEc
Q 036585 148 AAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS 227 (304)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s 227 (304)
+|.+.|.|+.|+|+..++++|+.|.++++||..+|..++.|. +|.++|++++||
T Consensus 533 -----------------------ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~---GH~~~V~al~~S 586 (707)
T KOG0263|consen 533 -----------------------GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT---GHKGPVTALAFS 586 (707)
T ss_pred -----------------------ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec---CCCCceEEEEEc
Confidence 788999999999999999999999999999999999999998 899999999999
Q ss_pred CCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCC
Q 036585 228 PEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDL 289 (304)
Q Consensus 228 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~ 289 (304)
|+|++|++|+.||.|.+||+.+++++..+.+|.+.|.++.|+.+|..||+|+.| +++||+..
T Consensus 587 p~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 587 PCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 999999999999999999999999999999999999999999999999999999 99998753
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.8e-42 Score=247.86 Aligned_cols=271 Identities=18% Similarity=0.258 Sum_probs=239.9
Q ss_pred eeeeecceee---EeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEE
Q 036585 11 KVSLELSEEI---LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 87 (304)
Q Consensus 11 ~~~~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vw 87 (304)
...+++|.+- +.|.+|.++|+++|.||.+.|||.-+....+.+.....-|...+|+|.++.+++|+- |+...||
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGL---dN~Csiy 124 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGL---DNKCSIY 124 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCc---CceeEEE
Confidence 4566777654 678899999999999999999999998888888888889999999999999999998 9999999
Q ss_pred EccCc------eeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecccee--EecC---CCeE
Q 036585 88 SLHDN------KYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAA--AYDD---QGLV 156 (304)
Q Consensus 88 d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~---~~~~ 156 (304)
++.+. +..+.+.+|++.+.|+.|.+|+ .|++++.|.+..+||+++++....+..+...++ .+.| +.++
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFv 203 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFV 203 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEE
Confidence 99865 3456788999999999999855 799999999999999999999999887655543 3444 3455
Q ss_pred EEecCCCeEEEEec---------CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEc
Q 036585 157 FGYEKGPLDIFSVG---------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS 227 (304)
Q Consensus 157 ~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s 227 (304)
.+.-++..++|+++ +|++.|++++|.|+|.-|++|+.|++.++||++..+.+..+... ....+|++++||
T Consensus 204 Sg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~-~~~~gitSv~FS 282 (343)
T KOG0286|consen 204 SGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHD-SIICGITSVAFS 282 (343)
T ss_pred ecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccC-cccCCceeEEEc
Confidence 67778888888764 68999999999999999999999999999999999999888743 456789999999
Q ss_pred CCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEec
Q 036585 228 PEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWI 286 (304)
Q Consensus 228 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~ 286 (304)
..|++|++|..|..+.+||.-.++.+..+.+|...|+++..+|||..+++|+.| ++||.
T Consensus 283 ~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 283 KSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999999999999999999999999999999999999999999999999 99994
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.3e-43 Score=249.91 Aligned_cols=241 Identities=19% Similarity=0.291 Sum_probs=207.5
Q ss_pred eeeeecceee---EeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEE
Q 036585 11 KVSLELSEEI---LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 87 (304)
Q Consensus 11 ~~~~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vw 87 (304)
...+++|... +.++++|++.++++.|+++|+||+.+++..+.+.+|...|.+++|++|.+.+++|+. |.+|++|
T Consensus 56 ~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSr---DkTiklw 132 (315)
T KOG0279|consen 56 VRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSR---DKTIKLW 132 (315)
T ss_pred eeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCC---cceeeee
Confidence 4567777766 567899999999999999999999999999999999999999999999999999999 9999999
Q ss_pred EccCceeeeeccc-ccccEEEEEEcCC--CCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCe
Q 036585 88 SLHDNKYSRYFKG-HHDRVVLLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPL 164 (304)
Q Consensus 88 d~~~~~~~~~~~~-~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (304)
+............ +.+.|.|+.|+|+ ..++++++.|+++++||+++.+....+.
T Consensus 133 nt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~----------------------- 189 (315)
T KOG0279|consen 133 NTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI----------------------- 189 (315)
T ss_pred eecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc-----------------------
Confidence 9876544433332 2789999999997 6799999999999999999887766554
Q ss_pred EEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEE
Q 036585 165 DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHA 244 (304)
Q Consensus 165 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v 244 (304)
+|+..++.+++||||.+.++|+.||.+.+||++.++.+..+. +...|.+++|+|+.-.|+.+. +..|+|
T Consensus 190 ------gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~----a~~~v~sl~fspnrywL~~at-~~sIkI 258 (315)
T KOG0279|consen 190 ------GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE----AFDIVNSLCFSPNRYWLCAAT-ATSIKI 258 (315)
T ss_pred ------cccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc----CCCeEeeEEecCCceeEeecc-CCceEE
Confidence 688899999999999999999999999999999999988876 889999999999987776665 556999
Q ss_pred EecCCCceeeeeec----c-----CCCCceEEeCCCCcEEEEecCc--eEEeccC
Q 036585 245 WSVRSGKEVASWMS----F-----DTEPPVIKWAPGSLMFVTGSSE--LSFWIPD 288 (304)
Q Consensus 245 ~d~~~~~~~~~~~~----~-----~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~ 288 (304)
||+.++..+..+.. . .....+++|++||..|++|-.| +++|.+.
T Consensus 259 wdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 259 WDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 99999888776632 1 2224678999999999999988 9999763
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.9e-43 Score=250.37 Aligned_cols=251 Identities=20% Similarity=0.294 Sum_probs=220.6
Q ss_pred ccccceeeeecceeeEeecc----cCcEEEEeeCCCeEEEEecC-----CcceeeeecccccceeEEEEccCCCeEEEEe
Q 036585 6 SEREDKVSLELSEEILQSME----VGIYLVTASDDESIRLYDVT-----AATCLKTINSKKYGVDLVCFTSHPTTVIYSS 76 (304)
Q Consensus 6 ~~~~~~~~~~~~~~~i~~~~----~~~~l~~~~~d~~i~vw~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 76 (304)
++......+++|.+-|.... +-+.+++++.|.++.+|++. .|.+++.+.+|...|..+..++++++.++++
T Consensus 3 e~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~s 82 (315)
T KOG0279|consen 3 EQLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSAS 82 (315)
T ss_pred hhheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecc
Confidence 44455667888887765443 36789999999999999876 4677899999999999999999999999999
Q ss_pred cCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeE
Q 036585 77 KNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLV 156 (304)
Q Consensus 77 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (304)
. |+.+++||+.+++..+.|.+|...|.+++|+||.+.+++|+.|.+|++|++.......... .
T Consensus 83 w---D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~-~------------- 145 (315)
T KOG0279|consen 83 W---DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHE-D------------- 145 (315)
T ss_pred c---cceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEec-C-------------
Confidence 8 9999999999999999999999999999999999999999999999999987544322221 1
Q ss_pred EEecCCCeEEEEecCCCCCceEEEEecC--CcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEE
Q 036585 157 FGYEKGPLDIFSVGGDISDANVVKFSND--GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVI 234 (304)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 234 (304)
.+..-|+++.|+|+ ..++++++.|+++++||+++.+....+. +|.+.++.+++||||..++
T Consensus 146 --------------~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~---gh~~~v~t~~vSpDGslca 208 (315)
T KOG0279|consen 146 --------------SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI---GHSGYVNTVTVSPDGSLCA 208 (315)
T ss_pred --------------CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc---cccccEEEEEECCCCCEEe
Confidence 12568999999998 7899999999999999999999888888 7999999999999999999
Q ss_pred EecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc-eEEeccCCcc
Q 036585 235 SGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE-LSFWIPDLSK 291 (304)
Q Consensus 235 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~~~~~ 291 (304)
+|+.||.+.+||++.++.+..+. |...|.+++|+|+.-.|+.+... |+||+.+.+.
T Consensus 209 sGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 209 SGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLESKA 265 (315)
T ss_pred cCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCceEEEeccchh
Confidence 99999999999999999988774 88899999999999999888877 9999998765
No 9
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-43 Score=264.06 Aligned_cols=250 Identities=25% Similarity=0.394 Sum_probs=207.7
Q ss_pred eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEE
Q 036585 49 CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLL 128 (304)
Q Consensus 49 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 128 (304)
+-..+.+|.++|.|+.|+|+++.|++|+. |.++++||+.+..+..+.++|...|.|++|+|||+.|++|+.||.|++
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsG---D~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~l 183 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSG---DTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRL 183 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCC---CceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEE
Confidence 34567899999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred EeCCcceeec-eEEEeccc--eeEecCC-----C--eEEEecCCCeEEEEe---------cCCCCCceEEEEecCCcEEE
Q 036585 129 WDQRAEKCQG-LLRVQGRP--AAAYDDQ-----G--LVFGYEKGPLDIFSV---------GGDISDANVVKFSNDGRLML 189 (304)
Q Consensus 129 wd~~~~~~~~-~~~~~~~~--~~~~~~~-----~--~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~l~ 189 (304)
||..++++.. .+..+... .++|.|- . +.....++.+++|++ .+|+.+|+|+.|--+| +++
T Consensus 184 wdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liy 262 (480)
T KOG0271|consen 184 WDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIY 262 (480)
T ss_pred ecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEE
Confidence 9999887654 33333322 3344332 2 223445777777765 4699999999997555 689
Q ss_pred EeeCCCeEEEEEcCCCceeEEEE---------------------------------------------------------
Q 036585 190 LTTMEGHIHVLDSFRGTLLSTYN--------------------------------------------------------- 212 (304)
Q Consensus 190 ~~~~dg~i~~~d~~~~~~~~~~~--------------------------------------------------------- 212 (304)
+|+.|++|++|+...|...+.+.
T Consensus 263 SgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSg 342 (480)
T KOG0271|consen 263 SGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSG 342 (480)
T ss_pred ecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEe
Confidence 99999999999866543322211
Q ss_pred -------------------eCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCc
Q 036585 213 -------------------VKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSL 273 (304)
Q Consensus 213 -------------------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 273 (304)
...+|..-|+.+.||||++++|+++-|.+|++||.++|+.+.++++|-++|+.++|+.|.+
T Consensus 343 sDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR 422 (480)
T KOG0271|consen 343 SDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR 422 (480)
T ss_pred cCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCcc
Confidence 0124566788899999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCc--eEEeccCCcccc-ccccCCCCC
Q 036585 274 MFVTGSSE--LSFWIPDLSKLG-AYVGRNRGC 302 (304)
Q Consensus 274 ~l~s~~~d--~~iw~~~~~~~~-~~~~~~~g~ 302 (304)
+|++|+.| +++|++..+++. .+.||.+.+
T Consensus 423 LlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEV 454 (480)
T KOG0271|consen 423 LLVSGSKDSTLKVWDVRTKKLKQDLPGHADEV 454 (480)
T ss_pred EEEEcCCCceEEEEEeeeeeecccCCCCCceE
Confidence 99999999 999999998874 678787764
No 10
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-40 Score=242.59 Aligned_cols=279 Identities=45% Similarity=0.763 Sum_probs=251.9
Q ss_pred eecceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCce
Q 036585 14 LELSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK 93 (304)
Q Consensus 14 ~~~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~ 93 (304)
..++...+.++.+|.++++++.|.++++||..+++++.++..++.++..++|......++.++. ..|.+|+..++.+++
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sSt-k~d~tIryLsl~dNk 91 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSST-KEDDTIRYLSLHDNK 91 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccC-CCCCceEEEEeecCc
Confidence 4566778999999999999999999999999999999999999999999999998888888876 349999999999999
Q ss_pred eeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecC--CCeEEEEecC
Q 036585 94 YSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEK--GPLDIFSVGG 171 (304)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 171 (304)
.++.+.+|...|.+++.+|-+..+++++.|++|++||++..++...+.....++.+++|.|.++.... +.+++++++.
T Consensus 92 ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs 171 (311)
T KOG1446|consen 92 YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRS 171 (311)
T ss_pred eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEecc
Confidence 99999999999999999998899999999999999999999999999999999999999998875543 3577777653
Q ss_pred --------------CCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEec
Q 036585 172 --------------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS 237 (304)
Q Consensus 172 --------------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 237 (304)
.....+.+.|||||++|+.++..+.+++.|.-+|....++...+....--...+|+||++++++|+
T Consensus 172 ~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs 251 (311)
T KOG1446|consen 172 FDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGS 251 (311)
T ss_pred cCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEec
Confidence 356788999999999999999999999999999999999987655544446789999999999999
Q ss_pred CCCcEEEEecCCCceeeeeec-cCCCCceEEeCCCCcEEEEecCceEEeccCCcccc
Q 036585 238 GDGSVHAWSVRSGKEVASWMS-FDTEPPVIKWAPGSLMFVTGSSELSFWIPDLSKLG 293 (304)
Q Consensus 238 ~dg~i~v~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~s~~~d~~iw~~~~~~~~ 293 (304)
.||+|++|++++++.+..+.+ +.+++.++.|+|.-.++++++..+.+|.++...+.
T Consensus 252 ~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~~~~~~ 308 (311)
T KOG1446|consen 252 DDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPDEDALP 308 (311)
T ss_pred CCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEeccccccC
Confidence 999999999999999999988 68999999999999999999999999998766543
No 11
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-40 Score=246.89 Aligned_cols=271 Identities=17% Similarity=0.261 Sum_probs=240.6
Q ss_pred ceeeeecceee---EeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEE
Q 036585 10 DKVSLELSEEI---LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86 (304)
Q Consensus 10 ~~~~~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~v 86 (304)
+.+.+.+|... +-+.|+-..+++++.|++|++||..++++...+++|...+..++|+..|+++++++. |-.+++
T Consensus 100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSs---Dl~~~L 176 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSS---DLSAKL 176 (406)
T ss_pred chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCC---ccchhh
Confidence 34445555544 456788889999999999999999999999999999999999999999999999998 888999
Q ss_pred EEccC-ceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecc--ceeEecCCCeEEEe--cC
Q 036585 87 LSLHD-NKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAYDDQGLVFGY--EK 161 (304)
Q Consensus 87 wd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~ 161 (304)
||..+ .++++.+.+|...|.++.|-|.|.++++++.|.+|+.|++.++-++..+..+.. ..+....+|.+++. .+
T Consensus 177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~d 256 (406)
T KOG0295|consen 177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSND 256 (406)
T ss_pred eeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCC
Confidence 99987 567888889999999999999999999999999999999999999998876544 35666778877654 45
Q ss_pred CCeEEEEec---------CCCCCceEEEEecC---------------CcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCC
Q 036585 162 GPLDIFSVG---------GDISDANVVKFSND---------------GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS 217 (304)
Q Consensus 162 ~~~~~~~~~---------~~~~~v~~~~~~~~---------------~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 217 (304)
..+.+|.+. .|+-+|.+++|-|. ++++.+++.|++|++||+.++.++.++. +|
T Consensus 257 qtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~---gh 333 (406)
T KOG0295|consen 257 QTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV---GH 333 (406)
T ss_pred ceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe---cc
Confidence 677788654 47888999999762 3589999999999999999999999999 89
Q ss_pred CCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEec
Q 036585 218 RNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWI 286 (304)
Q Consensus 218 ~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~ 286 (304)
.+.|..++|+|.|+||+++..|+++++||+++.++...+..|..-++++.|+.+..++++|+-| +++|.
T Consensus 334 dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 334 DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred cceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999 88885
No 12
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2e-39 Score=250.92 Aligned_cols=279 Identities=17% Similarity=0.275 Sum_probs=215.5
Q ss_pred ccccceeeeeccee---eEeecccCcEEEEeeCCCeEEEEecCCcceeeeec---ccccceeEEEEccCCCeEEEEecCC
Q 036585 6 SEREDKVSLELSEE---ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHPTTVIYSSKNG 79 (304)
Q Consensus 6 ~~~~~~~~~~~~~~---~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~~ 79 (304)
+..+-..+++.|.. .++++|||.++|+++.||.+.+||-.+++.+..+. +|++.|.+++|+||++.+++++.
T Consensus 178 PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa-- 255 (603)
T KOG0318|consen 178 PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA-- 255 (603)
T ss_pred CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC--
Confidence 33444455555654 46789999999999999999999999999999998 89999999999999999999999
Q ss_pred CCCceEEEEccCceeeee-------------------------------------------cccccccEEEEEEcCCCCE
Q 036585 80 WDESLRLLSLHDNKYSRY-------------------------------------------FKGHHDRVVLLSLCSSKDC 116 (304)
Q Consensus 80 ~d~~i~vwd~~~~~~~~~-------------------------------------------~~~~~~~v~~~~~~~~~~~ 116 (304)
|.+++|||+.+.+.+++ +.+|...|+++..+|++++
T Consensus 256 -Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~ 334 (603)
T KOG0318|consen 256 -DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKT 334 (603)
T ss_pred -CceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCE
Confidence 99999999987654332 3689999999999999999
Q ss_pred EEEcccCCeEEEEeCCcceeeceE-----------EEec-cc---------------------------------eeEec
Q 036585 117 FISGSLDRTVLLWDQRAEKCQGLL-----------RVQG-RP---------------------------------AAAYD 151 (304)
Q Consensus 117 l~~~~~dg~i~iwd~~~~~~~~~~-----------~~~~-~~---------------------------------~~~~~ 151 (304)
|++|+.||.|.-|+..++..-+.. .... .. .++..
T Consensus 335 i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~ 414 (603)
T KOG0318|consen 335 IYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVL 414 (603)
T ss_pred EEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEc
Confidence 999999999999998876544321 0000 00 01111
Q ss_pred CCC-eEEEecCCCeEEEE-ec-----CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEE
Q 036585 152 DQG-LVFGYEKGPLDIFS-VG-----GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA 224 (304)
Q Consensus 152 ~~~-~~~~~~~~~~~~~~-~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~ 224 (304)
+++ .++..-.+.+.+.. .. .-.....+++++|+++.+++|+.||.|++|.+..+......... .|.++++++
T Consensus 415 ~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~-~h~a~iT~v 493 (603)
T KOG0318|consen 415 SDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLL-EHRAAITDV 493 (603)
T ss_pred CCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeee-cccCCceEE
Confidence 111 11111112222221 11 11235678999999999999999999999999876654432222 589999999
Q ss_pred EEcCCCcEEEEecCCCcEEEEecCCCce-eeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccC
Q 036585 225 SFSPEGMFVISGSGDGSVHAWSVRSGKE-VASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPD 288 (304)
Q Consensus 225 ~~s~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~ 288 (304)
+||||+.|||++...+.+.+||+.+.+. ...+..|.+.|.+++|+|++.++|+|+-| +.||..+
T Consensus 494 aySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~ 560 (603)
T KOG0318|consen 494 AYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVK 560 (603)
T ss_pred EECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEcc
Confidence 9999999999999999999999988776 34456699999999999999999999999 7777764
No 13
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5.9e-42 Score=257.15 Aligned_cols=242 Identities=21% Similarity=0.386 Sum_probs=217.8
Q ss_pred eecceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCce
Q 036585 14 LELSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK 93 (304)
Q Consensus 14 ~~~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~ 93 (304)
.+.....+.|.|+|+.|++|+..|.+.+|+..+-.....++.|..+|.++.|++++.++++|.. +|.|++|+..-..
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~---gG~iKyWqpnmnn 171 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDK---GGMIKYWQPNMNN 171 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCC---CceEEecccchhh
Confidence 3445667999999999999999999999998766666667899999999999999999999998 9999999986543
Q ss_pred eeeeccccc-ccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCC
Q 036585 94 YSRYFKGHH-DRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGD 172 (304)
Q Consensus 94 ~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (304)
++.++.|. ..|.+++|+|+...|++++.||+|+|||....+....+. +|
T Consensus 172 -Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~-----------------------------GH 221 (464)
T KOG0284|consen 172 -VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR-----------------------------GH 221 (464)
T ss_pred -hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheec-----------------------------cC
Confidence 45555554 899999999999999999999999999999888777664 67
Q ss_pred CCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCce
Q 036585 173 ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKE 252 (304)
Q Consensus 173 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~ 252 (304)
.-.|.+++|+|...++++++.|..|++||.++++++.++. .|+..|..+.|+|++++|++++.|..++++|+++.+.
T Consensus 222 gwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh---~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE 298 (464)
T KOG0284|consen 222 GWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH---GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE 298 (464)
T ss_pred CCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhh---hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHH
Confidence 7899999999999999999999999999999999999998 7999999999999999999999999999999999999
Q ss_pred eeeeeccCCCCceEEeCCC-CcEEEEecCc--eEEeccCCcc
Q 036585 253 VASWMSFDTEPPVIKWAPG-SLMFVTGSSE--LSFWIPDLSK 291 (304)
Q Consensus 253 ~~~~~~~~~~i~~~~~~~~-~~~l~s~~~d--~~iw~~~~~~ 291 (304)
+..+++|...++++.|+|- ..+|.+|+.| +..|.+..++
T Consensus 299 l~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~ 340 (464)
T KOG0284|consen 299 LFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE 340 (464)
T ss_pred HHHhhcchhhheeeccccccccceeeccCCCceEEEeccccc
Confidence 9999999999999999994 5688889999 8889888544
No 14
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7.9e-40 Score=249.93 Aligned_cols=238 Identities=18% Similarity=0.298 Sum_probs=218.4
Q ss_pred eEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc
Q 036585 20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK 99 (304)
Q Consensus 20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~ 99 (304)
.+.|..+|..||+|+.||.+|+|+. ++.++.++..|+++|.++.|+..|.+|++++. |+++.+||..+++..+.+.
T Consensus 240 ~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~v---D~ttilwd~~~g~~~q~f~ 315 (524)
T KOG0273|consen 240 SLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGV---DGTTILWDAHTGTVKQQFE 315 (524)
T ss_pred eEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccC---CccEEEEeccCceEEEeee
Confidence 4778889999999999999999995 58889999999999999999999999999999 9999999999999999999
Q ss_pred cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEE
Q 036585 100 GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVV 179 (304)
Q Consensus 100 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 179 (304)
.|..+-..+.|-.+ ..|++++.|+.|+++.+....+...+. +|.+.|.++
T Consensus 316 ~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~-----------------------------GH~g~V~al 365 (524)
T KOG0273|consen 316 FHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFI-----------------------------GHHGEVNAL 365 (524)
T ss_pred eccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeee-----------------------------cccCceEEE
Confidence 89988788899754 479999999999999998888777765 688999999
Q ss_pred EEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCC---------cEEEEecCCCcEEEEecCCC
Q 036585 180 KFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG---------MFVISGSGDGSVHAWSVRSG 250 (304)
Q Consensus 180 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~---------~~l~~~~~dg~i~v~d~~~~ 250 (304)
.|+|.|.+|++++.|+++++|.+........+. .|...|..+.|+|.| ..+++++.|++|++||+..+
T Consensus 366 k~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~---~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g 442 (524)
T KOG0273|consen 366 KWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ---AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG 442 (524)
T ss_pred EECCCCceEEEecCCCeeEeeecCCCcchhhhh---hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC
Confidence 999999999999999999999998888888888 788999999999965 47899999999999999999
Q ss_pred ceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCccccc
Q 036585 251 KEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKLGA 294 (304)
Q Consensus 251 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~~~ 294 (304)
.++..+..|..+|.+++|+|+|+++|+|+.| +.||.....++..
T Consensus 443 v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~ 488 (524)
T KOG0273|consen 443 VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVK 488 (524)
T ss_pred ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeE
Confidence 9999999999999999999999999999999 8999988776643
No 15
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.7e-39 Score=266.99 Aligned_cols=245 Identities=27% Similarity=0.444 Sum_probs=218.4
Q ss_pred EeecccCcEEEEeeCCCeEEEEecCCcc--eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEc-cCceeeee
Q 036585 21 LQSMEVGIYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL-HDNKYSRY 97 (304)
Q Consensus 21 i~~~~~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~-~~~~~~~~ 97 (304)
+.++++|+++++++.|+.+++|+..+.+ ..+.+.+|...|..++|+|+++++++++. |++|++||+ ..+..+++
T Consensus 165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~---D~tiriwd~~~~~~~~~~ 241 (456)
T KOG0266|consen 165 VDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSD---DKTLRIWDLKDDGRNLKT 241 (456)
T ss_pred EEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecC---CceEEEeeccCCCeEEEE
Confidence 5679999999999999999999998777 77888899999999999999999999999 999999999 55688999
Q ss_pred cccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCce
Q 036585 98 FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDAN 177 (304)
Q Consensus 98 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 177 (304)
+++|...|++++|+|+++++++|+.|++|++||++++++...+. +|...|+
T Consensus 242 l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~-----------------------------~hs~~is 292 (456)
T KOG0266|consen 242 LKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK-----------------------------GHSDGIS 292 (456)
T ss_pred ecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee-----------------------------ccCCceE
Confidence 99999999999999999999999999999999999988877775 6788999
Q ss_pred EEEEecCCcEEEEeeCCCeEEEEEcCCCc--eeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeee
Q 036585 178 VVKFSNDGRLMLLTTMEGHIHVLDSFRGT--LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVAS 255 (304)
Q Consensus 178 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~ 255 (304)
+++|++++.+|++++.|+.|++||+.++. +...+....... ++++++|+|++.++++++.|+.+++||+..++.+..
T Consensus 293 ~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~ 371 (456)
T KOG0266|consen 293 GLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGT 371 (456)
T ss_pred EEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceee
Confidence 99999999999999999999999999998 456665333333 699999999999999999999999999999999999
Q ss_pred eeccCCCC---ceEEeCCCCcEEEEecCc--eEEeccC-CccccccccC
Q 036585 256 WMSFDTEP---PVIKWAPGSLMFVTGSSE--LSFWIPD-LSKLGAYVGR 298 (304)
Q Consensus 256 ~~~~~~~i---~~~~~~~~~~~l~s~~~d--~~iw~~~-~~~~~~~~~~ 298 (304)
+.+|...+ .+...++.+.++++|+.| +.+|+.. ...+..+.+|
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 372 YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGH 420 (456)
T ss_pred ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCC
Confidence 98888753 344457799999999999 9999997 5556677776
No 16
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.1e-40 Score=266.70 Aligned_cols=205 Identities=26% Similarity=0.363 Sum_probs=193.8
Q ss_pred ceeeeecceee---EeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEE
Q 036585 10 DKVSLELSEEI---LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86 (304)
Q Consensus 10 ~~~~~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~v 86 (304)
...++-+|.+. .+++|+.++|+++|.|+++|+|.+.+...+-.+++|..+|..+.|+|.|-++++++. |++.++
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~---D~tArL 519 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASH---DQTARL 519 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCC---Cceeee
Confidence 34447778776 578999999999999999999999999999999999999999999999999999988 999999
Q ss_pred EEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEE
Q 036585 87 LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDI 166 (304)
Q Consensus 87 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (304)
|......+.+.+.+|-..|.|+.|+|+..|+++|+.|.++++||+.++..++.|.
T Consensus 520 Ws~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~------------------------- 574 (707)
T KOG0263|consen 520 WSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT------------------------- 574 (707)
T ss_pred eecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec-------------------------
Confidence 9999999999999999999999999999999999999999999999999887775
Q ss_pred EEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEe
Q 036585 167 FSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWS 246 (304)
Q Consensus 167 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d 246 (304)
+|.++|.+++|||+|++|++|+.||.|.+||+.+++.+..+. +|.+.|.++.||.+|..||+|+.|++|++||
T Consensus 575 ----GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~---~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 575 ----GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK---GHTGTIYSLSFSRDGNVLASGGADNSVRLWD 647 (707)
T ss_pred ----CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh---cccCceeEEEEecCCCEEEecCCCCeEEEEE
Confidence 799999999999999999999999999999999999999998 6899999999999999999999999999999
Q ss_pred cCC
Q 036585 247 VRS 249 (304)
Q Consensus 247 ~~~ 249 (304)
+..
T Consensus 648 ~~~ 650 (707)
T KOG0263|consen 648 LTK 650 (707)
T ss_pred chh
Confidence 864
No 17
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.5e-39 Score=226.03 Aligned_cols=272 Identities=22% Similarity=0.356 Sum_probs=232.2
Q ss_pred eeeeeccee---eEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEE
Q 036585 11 KVSLELSEE---ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 87 (304)
Q Consensus 11 ~~~~~~~~~---~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vw 87 (304)
...+..+++ ++++.-+|+|.++++.|.+|++|+...+.+++++.+|...|..++.+.|...+++++. |..+.+|
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~Gg---Dk~v~vw 86 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGG---DKAVQVW 86 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCC---CceEEEE
Confidence 344555554 4667788999999999999999999999999999999999999999999999999998 9999999
Q ss_pred EccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCccee--eceEEE--eccceeEecCCCeEEEecCCC
Q 036585 88 SLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKC--QGLLRV--QGRPAAAYDDQGLVFGYEKGP 163 (304)
Q Consensus 88 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 163 (304)
|+++|+..+.+.+|.+.|..++|+.+...+++|+.|..+++||-++... ++.+.. .+...+.......+.+..++.
T Consensus 87 DV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGt 166 (307)
T KOG0316|consen 87 DVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGT 166 (307)
T ss_pred EcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCc
Confidence 9999999999999999999999999999999999999999999987654 334432 333455666777888899999
Q ss_pred eEEEEecCC-------CCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEe
Q 036585 164 LDIFSVGGD-------ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG 236 (304)
Q Consensus 164 ~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 236 (304)
++.|++... ..+|+++.|+++++..++++.|+++++.|-.+|+.+..+..+.. ...-...+++....++++|
T Consensus 167 vRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn-~eykldc~l~qsdthV~sg 245 (307)
T KOG0316|consen 167 VRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKN-MEYKLDCCLNQSDTHVFSG 245 (307)
T ss_pred EEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccccc-ceeeeeeeecccceeEEec
Confidence 999998743 47899999999999999999999999999999999999984332 2234456788888899999
Q ss_pred cCCCcEEEEecCCCceeeeeeccCCC-CceEEeCCCCcEEEEecCc-eEEec
Q 036585 237 SGDGSVHAWSVRSGKEVASWMSFDTE-PPVIKWAPGSLMFVTGSSE-LSFWI 286 (304)
Q Consensus 237 ~~dg~i~v~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~s~~~d-~~iw~ 286 (304)
++||.|++||+.+...+..+..+... +.++.++|.-.-|+++... ...|.
T Consensus 246 SEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~ 297 (307)
T KOG0316|consen 246 SEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHGDLFWY 297 (307)
T ss_pred cCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCceecee
Confidence 99999999999999999999888777 8999999987766666655 55553
No 18
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.4e-40 Score=249.88 Aligned_cols=238 Identities=22% Similarity=0.381 Sum_probs=213.0
Q ss_pred ecceee---EeecccCcEEEEeeCCCeEEEEecCCcceeeeeccc-ccceeEEEEccCCCeEEEEecCCCCCceEEEEcc
Q 036585 15 ELSEEI---LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSK-KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH 90 (304)
Q Consensus 15 ~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~ 90 (304)
+.|+.+ +.++.+|.++++|+.+|.|++|+..- +.+..++.| ...|.+++|+|+...+++++. ||+|+|||..
T Consensus 135 QaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~Sd---Dg~ikiWdf~ 210 (464)
T KOG0284|consen 135 QAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSD---DGTIKIWDFR 210 (464)
T ss_pred hhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCCCceeEEecC---CCeEEEEecc
Confidence 445554 56788999999999999999999764 444555554 489999999999999999999 9999999999
Q ss_pred CceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEec
Q 036585 91 DNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVG 170 (304)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (304)
..+....+.+|.-.|.+++|+|...++++++.|..|++||.++++++..+.
T Consensus 211 ~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh----------------------------- 261 (464)
T KOG0284|consen 211 MPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH----------------------------- 261 (464)
T ss_pred CCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhh-----------------------------
Confidence 988888899999999999999999999999999999999999999987775
Q ss_pred CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcC-CCcEEEEecCCCcEEEEecCC
Q 036585 171 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-EGMFVISGSGDGSVHAWSVRS 249 (304)
Q Consensus 171 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~v~d~~~ 249 (304)
.|...|..+.|+|++++|++++.|..+++||+++.+.+..++ +|...++++.|+| ...+|.+|+.||.|..|.+..
T Consensus 262 ~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r---~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~ 338 (464)
T KOG0284|consen 262 GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYR---GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGL 338 (464)
T ss_pred hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhh---cchhhheeeccccccccceeeccCCCceEEEeccc
Confidence 677889999999999999999999999999999888888888 7999999999999 667899999999999999986
Q ss_pred Cceeeee-eccCCCCceEEeCCCCcEEEEecCc--eEEeccC
Q 036585 250 GKEVASW-MSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPD 288 (304)
Q Consensus 250 ~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~ 288 (304)
.+++..+ .+|...|++++|+|-|.+|++|+.| +++|.-.
T Consensus 339 ~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 339 EEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred cccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 6666555 6899999999999999999999999 9999653
No 19
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.1e-38 Score=222.93 Aligned_cols=251 Identities=16% Similarity=0.277 Sum_probs=210.8
Q ss_pred eeeeecce---eeEeecccCcEEEEeeCCCeEEEEecCCcc--eeeeecccccceeEEEEccCCCeEEEEecCCCCCceE
Q 036585 11 KVSLELSE---EILQSMEVGIYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 85 (304)
Q Consensus 11 ~~~~~~~~---~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~ 85 (304)
..++++.+ +.+...|+++.||+++.- .||+||+.+++ ++.++.+|+..|.++.|..+|+.+++|+. ||+++
T Consensus 33 ~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgse---Dgt~k 108 (311)
T KOG0315|consen 33 SRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSE---DGTVK 108 (311)
T ss_pred EEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCC---CceEE
Confidence 44455443 456778899999999875 69999998764 68999999999999999999999999999 99999
Q ss_pred EEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecc---ceeEecCCCeEE--Eec
Q 036585 86 LLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR---PAAAYDDQGLVF--GYE 160 (304)
Q Consensus 86 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~ 160 (304)
|||++...+.+.++ |..+|.++..+|+...|++|..+|.|++||+....+...+-.... ..+...+++..+ ...
T Consensus 109 IWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn 187 (311)
T KOG0315|consen 109 IWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN 187 (311)
T ss_pred EEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC
Confidence 99999977777776 789999999999999999999999999999998876655543322 245566776544 445
Q ss_pred CCCeEEEEec---------------CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCC-ceeEEEEeCCCCCCcceEE
Q 036585 161 KGPLDIFSVG---------------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG-TLLSTYNVKPVSRNSTLEA 224 (304)
Q Consensus 161 ~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~~~~i~~~ 224 (304)
.|...+|++- .|++.+..+.+||++++|++++.|.+++||+.++. +....+. +|...+..+
T Consensus 188 kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~---gh~rWvWdc 264 (311)
T KOG0315|consen 188 KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLT---GHQRWVWDC 264 (311)
T ss_pred CccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEee---cCCceEEee
Confidence 6677777654 46778889999999999999999999999999887 4444444 688999999
Q ss_pred EEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeC
Q 036585 225 SFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWA 269 (304)
Q Consensus 225 ~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~ 269 (304)
+||.||.||++|+.|+.+++||+..++.++.+.+|..+..|++.+
T Consensus 265 ~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 265 AFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred eeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 999999999999999999999999999999999999888887764
No 20
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7.8e-39 Score=236.97 Aligned_cols=243 Identities=17% Similarity=0.280 Sum_probs=220.3
Q ss_pred eeeeecceeeEe---ecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEE
Q 036585 11 KVSLELSEEILQ---SMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 87 (304)
Q Consensus 11 ~~~~~~~~~~i~---~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vw 87 (304)
...+.+|-+-|. +-|.+.++++|+.|++++|||+.++++..++.+|...|..+++|+-..++++++. |+.|+.|
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~ge---dk~VKCw 220 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGE---DKQVKCW 220 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecC---CCeeEEE
Confidence 344667766554 4567899999999999999999999999999999999999999999999999998 9999999
Q ss_pred EccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEE
Q 036585 88 SLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIF 167 (304)
Q Consensus 88 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (304)
|++.++.++.+.+|-..|+|++.+|.-..|++|+.|.++++||+++...+..+.
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~-------------------------- 274 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS-------------------------- 274 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec--------------------------
Confidence 999999999999999999999999999999999999999999999987765554
Q ss_pred EecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEec
Q 036585 168 SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSV 247 (304)
Q Consensus 168 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~ 247 (304)
+|..+|..+.+.|....+++|+.|++|++||++.|+...++. .|...+.+++.+|....+|+++.|. |+-|++
T Consensus 275 ---GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt---~hkksvral~lhP~e~~fASas~dn-ik~w~~ 347 (460)
T KOG0285|consen 275 ---GHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLT---HHKKSVRALCLHPKENLFASASPDN-IKQWKL 347 (460)
T ss_pred ---CCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeee---cccceeeEEecCCchhhhhccCCcc-ceeccC
Confidence 889999999999988889999999999999999999998888 6889999999999999999999886 999999
Q ss_pred CCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCc
Q 036585 248 RSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLS 290 (304)
Q Consensus 248 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~ 290 (304)
..+..+..+.+|..-|++++.+.|+ ++++|+++ +.+|+|...
T Consensus 348 p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 348 PEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred CccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcC
Confidence 9999999999999999999998887 55666666 788888654
No 21
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=4.3e-38 Score=227.72 Aligned_cols=273 Identities=18% Similarity=0.245 Sum_probs=225.9
Q ss_pred eeeeecceee---EeecccCcEEEEeeCCCeEEEEecC-CcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEE
Q 036585 11 KVSLELSEEI---LQSMEVGIYLVTASDDESIRLYDVT-AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86 (304)
Q Consensus 11 ~~~~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~v 86 (304)
...+.+|++. +.|+|+|.+||+|+.|..|.+|++. .-+-...+++|.+.|..+.|.+|++.+++++. |.+++.
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gt---Dk~v~~ 116 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGT---DKTVRG 116 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecC---CceEEE
Confidence 3345666655 6789999999999999999999954 44566788899999999999999999999999 999999
Q ss_pred EEccCceeeeecccccccEEEEEEcCCC-CEEEEcccCCeEEEEeCCcceeeceEEEe-ccceeEecCC--CeEEEecCC
Q 036585 87 LSLHDNKYSRYFKGHHDRVVLLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQ-GRPAAAYDDQ--GLVFGYEKG 162 (304)
Q Consensus 87 wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~ 162 (304)
||+++|+.++.+++|..-|.++.-+.-| .++.+++.|+++++||+++...++.+... ....+.+... ..+.+.-++
T Consensus 117 wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn 196 (338)
T KOG0265|consen 117 WDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDN 196 (338)
T ss_pred EecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccC
Confidence 9999999999999999999998854433 46778899999999999988887776332 2234445433 455566677
Q ss_pred CeEEEEe---------cCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCC----ceeEEEEeCC-CCCCcceEEEEcC
Q 036585 163 PLDIFSV---------GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG----TLLSTYNVKP-VSRNSTLEASFSP 228 (304)
Q Consensus 163 ~~~~~~~---------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~----~~~~~~~~~~-~~~~~i~~~~~s~ 228 (304)
.+++|++ .+|...|+.+..+|+|.++.+-+.|.++++||++-. +++..+.... .-......++|+|
T Consensus 197 ~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp 276 (338)
T KOG0265|consen 197 DIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP 276 (338)
T ss_pred ceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC
Confidence 8888876 478999999999999999999999999999998743 3355555221 1123455689999
Q ss_pred CCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCceEEec
Q 036585 229 EGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSELSFWI 286 (304)
Q Consensus 229 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~iw~ 286 (304)
+++++.+|+.|..+++||......+..+++|.+.|++++|+|...+|.+++.|-+||.
T Consensus 277 ~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 277 NGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred CCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 9999999999999999999888999999999999999999999999999999966664
No 22
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-38 Score=239.52 Aligned_cols=276 Identities=22% Similarity=0.330 Sum_probs=223.3
Q ss_pred ceeeeecceee---EeecccCcEEEEeeCCCeEEEEecCCc---ceeeeecccccceeEEEEccCCCeEEEEecCCCCCc
Q 036585 10 DKVSLELSEEI---LQSMEVGIYLVTASDDESIRLYDVTAA---TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES 83 (304)
Q Consensus 10 ~~~~~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~ 83 (304)
..+.+.-|.+- ++++++|+|||+++.|.+..+|++... +...++.+|..+|..+.||||.++|++++. +..
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~---~e~ 292 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGF---DEV 292 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCc---hHh
Confidence 34445545443 678899999999999999999987643 457889999999999999999999999998 899
Q ss_pred eEEEEccCceeeeecc-cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeec--eEEEeccceeEecCCC--eEEE
Q 036585 84 LRLLSLHDNKYSRYFK-GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG--LLRVQGRPAAAYDDQG--LVFG 158 (304)
Q Consensus 84 i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~ 158 (304)
+.+||+.+|.....+. ++...+.+++|.|||..+++|+.|+++..||+....... -.+.+....++..++| .+..
T Consensus 293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v 372 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLV 372 (519)
T ss_pred eeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEE
Confidence 9999999999887776 345789999999999999999999999999987543211 1112223345556665 4446
Q ss_pred ecCCCeEEEEecC--------CCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcC-C
Q 036585 159 YEKGPLDIFSVGG--------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-E 229 (304)
Q Consensus 159 ~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~-~ 229 (304)
..+..+.++..+. ...+++++..|.+++++++.-.+..+++||++..+.+..+..+. ....+..-||-- +
T Consensus 373 ~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghk-q~~fiIrSCFgg~~ 451 (519)
T KOG0293|consen 373 TVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHK-QGHFIIRSCFGGGN 451 (519)
T ss_pred ecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhccc-ccceEEEeccCCCC
Confidence 6677777776543 45789999999999999999999999999999888888887432 223444456655 5
Q ss_pred CcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCC-cEEEEecCc--eEEeccCC
Q 036585 230 GMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGS-LMFVTGSSE--LSFWIPDL 289 (304)
Q Consensus 230 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~d--~~iw~~~~ 289 (304)
..++++|++|+.|+||+..+++++..+.||...|++++|+|.. .++|+|++| ||||-+.-
T Consensus 452 ~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 452 DKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 5899999999999999999999999999999999999999955 688999999 99997753
No 23
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.1e-37 Score=248.34 Aligned_cols=266 Identities=15% Similarity=0.230 Sum_probs=227.1
Q ss_pred eeEeecccCcEEEEeeCC-CeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee
Q 036585 19 EILQSMEVGIYLVTASDD-ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY 97 (304)
Q Consensus 19 ~~i~~~~~~~~l~~~~~d-~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~ 97 (304)
..+.+...|++||.|+.. |.+.||++++...+...++|...+.+++++|||+++++|+. ||.|+|||..++-+..+
T Consensus 311 ~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~e---DgKVKvWn~~SgfC~vT 387 (893)
T KOG0291|consen 311 LTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAE---DGKVKVWNTQSGFCFVT 387 (893)
T ss_pred eEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccC---CCcEEEEeccCceEEEE
Confidence 345666679999999865 78999999999999999999999999999999999999999 99999999999999999
Q ss_pred cccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccc---eeEecCCCeEEEecC---CCeEEEEe--
Q 036585 98 FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP---AAAYDDQGLVFGYEK---GPLDIFSV-- 169 (304)
Q Consensus 98 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~-- 169 (304)
|..|+..|+.+.|+..++.+++.+.||+|+.||+...+.-+++..+.+. +++.++.|.++.... -.+.+|.+
T Consensus 388 FteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qT 467 (893)
T KOG0291|consen 388 FTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQT 467 (893)
T ss_pred eccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeec
Confidence 9999999999999999999999999999999999999988888766554 566787786664332 24566654
Q ss_pred -------cCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCC-ceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCc
Q 036585 170 -------GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG-TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGS 241 (304)
Q Consensus 170 -------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 241 (304)
.+|+++|.+++|+|++..|++++.|.+|++||+-.. ....++. ....+..++|+|+|+.|++++-||.
T Consensus 468 GqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~----i~sdvl~vsfrPdG~elaVaTldgq 543 (893)
T KOG0291|consen 468 GQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE----IRSDVLAVSFRPDGKELAVATLDGQ 543 (893)
T ss_pred CeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe----eccceeEEEEcCCCCeEEEEEecce
Confidence 479999999999999999999999999999998654 3445555 6778999999999999999999999
Q ss_pred EEEEecCCCceeeeee--------------------ccCCCCceEEeCCCCcEEEEecCc--eEEeccCCcc
Q 036585 242 VHAWSVRSGKEVASWM--------------------SFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSK 291 (304)
Q Consensus 242 i~v~d~~~~~~~~~~~--------------------~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~ 291 (304)
|.+||.+.+..+..+. ......+.+++++||..+++|+.. +.||+...+.
T Consensus 544 Itf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 544 ITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGV 615 (893)
T ss_pred EEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhh
Confidence 9999998765543321 123568899999999999999887 9999886554
No 24
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.5e-37 Score=249.49 Aligned_cols=277 Identities=16% Similarity=0.241 Sum_probs=228.5
Q ss_pred eeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCe--EEEEecCCCCCceEEEEccCce-ee
Q 036585 19 EILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTT--VIYSSKNGWDESLRLLSLHDNK-YS 95 (304)
Q Consensus 19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~~~~d~~i~vwd~~~~~-~~ 95 (304)
-.+.+.|.|..+++|+.|+.++|||+..+.+.+.+++|.+.|.++.|+|+-.+ |+++.. |+.+++||+++.. ++
T Consensus 109 i~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~---D~~v~vwnl~~~~tcl 185 (775)
T KOG0319|consen 109 ITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGAT---DGTVRVWNLNDKRTCL 185 (775)
T ss_pred EEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCC---CceEEEEEcccCchHH
Confidence 34678888999999999999999999999999999999999999999997765 667776 9999999999655 48
Q ss_pred eecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecc----------------ce------------
Q 036585 96 RYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR----------------PA------------ 147 (304)
Q Consensus 96 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------------~~------------ 147 (304)
..+..|...|++++|.+++..+++++.|..+.+||+.+.+....++.... ..
T Consensus 186 ~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~ 265 (775)
T KOG0319|consen 186 HTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYW 265 (775)
T ss_pred HHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEE
Confidence 88899999999999999999999999999999999864433222110000 00
Q ss_pred --------------------------------------------------------------------------------
Q 036585 148 -------------------------------------------------------------------------------- 147 (304)
Q Consensus 148 -------------------------------------------------------------------------------- 147 (304)
T Consensus 266 d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs 345 (775)
T KOG0319|consen 266 DSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNS 345 (775)
T ss_pred ecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCC
Confidence
Q ss_pred -----------------------eEec--CCC--eEE-------------------------------------------
Q 036585 148 -----------------------AAYD--DQG--LVF------------------------------------------- 157 (304)
Q Consensus 148 -----------------------~~~~--~~~--~~~------------------------------------------- 157 (304)
++.+ .++ .+.
T Consensus 346 ~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~as 425 (775)
T KOG0319|consen 346 PELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGAS 425 (775)
T ss_pred CceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCcc
Confidence 0000 000 000
Q ss_pred ----EecCCCeEEEEecC------------------CCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCC
Q 036585 158 ----GYEKGPLDIFSVGG------------------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP 215 (304)
Q Consensus 158 ----~~~~~~~~~~~~~~------------------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 215 (304)
+..+..+++|.+.. |...|++++++|+.+++++|+.|.+.++|++...+...++.
T Consensus 426 ffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs--- 502 (775)
T KOG0319|consen 426 FFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS--- 502 (775)
T ss_pred EEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEee---
Confidence 33334444444332 56789999999999999999999999999999999999998
Q ss_pred CCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCcc-c
Q 036585 216 VSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSK-L 292 (304)
Q Consensus 216 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~-~ 292 (304)
+|...+.++.|+|..+.+++++.|++|+||.+.++.+++++.+|...|..+.|-.++.+|++++.| +++|++..+. +
T Consensus 503 GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~ 582 (775)
T KOG0319|consen 503 GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECE 582 (775)
T ss_pred CCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhh
Confidence 899999999999999999999999999999999999999999999999999999999999999999 9999997654 6
Q ss_pred cccccCCCC
Q 036585 293 GAYVGRNRG 301 (304)
Q Consensus 293 ~~~~~~~~g 301 (304)
..+.+|++-
T Consensus 583 ~tlD~H~Dr 591 (775)
T KOG0319|consen 583 MTLDAHNDR 591 (775)
T ss_pred hhhhhccce
Confidence 778888764
No 25
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.8e-37 Score=255.04 Aligned_cols=239 Identities=23% Similarity=0.401 Sum_probs=209.7
Q ss_pred eEeecccCcEEEEeeCCCeEEEEec-CCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeec
Q 036585 20 ILQSMEVGIYLVTASDDESIRLYDV-TAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYF 98 (304)
Q Consensus 20 ~i~~~~~~~~l~~~~~d~~i~vw~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~ 98 (304)
.+.|+++|+++++++.|++|+|||+ ..+..++++.+|...|++++|+|+++.+++|+. |++|++||++++++...+
T Consensus 208 ~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~---D~tvriWd~~~~~~~~~l 284 (456)
T KOG0266|consen 208 DVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSD---DGTVRIWDVRTGECVRKL 284 (456)
T ss_pred eeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecC---CCcEEEEeccCCeEEEee
Confidence 3789999999999999999999999 556899999999999999999999999999998 999999999999999999
Q ss_pred ccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceee--ceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCc
Q 036585 99 KGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ--GLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDA 176 (304)
Q Consensus 99 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 176 (304)
.+|.+.|.+++|++++++|++++.|+.|++||+.++... ..+... .... .+
T Consensus 285 ~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~--------------------------~~~~-~~ 337 (456)
T KOG0266|consen 285 KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGA--------------------------ENSA-PV 337 (456)
T ss_pred eccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCC--------------------------CCCC-ce
Confidence 999999999999999999999999999999999998843 332211 0122 68
Q ss_pred eEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeee
Q 036585 177 NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASW 256 (304)
Q Consensus 177 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 256 (304)
+.++|+|+++++++++.|+.+++||++.+.....+..+......+.+..+++.+.++++|+.|+.|++||+.++..+..+
T Consensus 338 ~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l 417 (456)
T KOG0266|consen 338 TSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL 417 (456)
T ss_pred eEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhh
Confidence 99999999999999999999999999999999888843221124455566789999999999999999999999999999
Q ss_pred ecc-CCCCceEEeCCCCcEEEEec--Cc--eEEeccC
Q 036585 257 MSF-DTEPPVIKWAPGSLMFVTGS--SE--LSFWIPD 288 (304)
Q Consensus 257 ~~~-~~~i~~~~~~~~~~~l~s~~--~d--~~iw~~~ 288 (304)
.+| ...+..+.++|...++++++ .| +++|..+
T Consensus 418 ~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 418 EGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 999 88999999999999999998 45 7888664
No 26
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=6.5e-39 Score=245.65 Aligned_cols=245 Identities=18% Similarity=0.292 Sum_probs=204.9
Q ss_pred cceeeeecceeeEe---ecc-cCcEEEEeeCCCeEEEEecCC-cceeeeecccccceeEEEEccCCCeEEEEecCCCCCc
Q 036585 9 EDKVSLELSEEILQ---SME-VGIYLVTASDDESIRLYDVTA-ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES 83 (304)
Q Consensus 9 ~~~~~~~~~~~~i~---~~~-~~~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~ 83 (304)
+..+...+|...+. +.| .+.+|++++.|+.|+||++.. +++++++.+|..+|..++|+++|..+++++. |+.
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sf---D~~ 281 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASF---DRF 281 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeec---cee
Confidence 34556677776554 556 689999999999999999886 8999999999999999999999999999998 999
Q ss_pred eEEEEccCceeeeecccccccEEEEEEcCCC-CEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCC
Q 036585 84 LRLLSLHDNKYSRYFKGHHDRVVLLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKG 162 (304)
Q Consensus 84 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (304)
|++||.++|++...+. ....++|+.|+|++ +.|++|+.|+.|+.||+++++.++.+.
T Consensus 282 lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd--------------------- 339 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD--------------------- 339 (503)
T ss_pred eeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH---------------------
Confidence 9999999999998886 45578999999988 799999999999999999999877664
Q ss_pred CeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEe-----------------------------
Q 036585 163 PLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV----------------------------- 213 (304)
Q Consensus 163 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~----------------------------- 213 (304)
.|-+.|..+.|-++|+.+++++.|+.+++|+.+....+.....
T Consensus 340 --------~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~i 411 (503)
T KOG0282|consen 340 --------RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAI 411 (503)
T ss_pred --------hhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEE
Confidence 3556778888888888888888888888887654322211100
Q ss_pred --------------CCC--CCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCC-cEEE
Q 036585 214 --------------KPV--SRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGS-LMFV 276 (304)
Q Consensus 214 --------------~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~ 276 (304)
..+ ..+.-..+.|||||.+|++|+.||.+.+||.++.+.+..++.|..++..+.|+|.. ..+|
T Consensus 412 fs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skva 491 (503)
T KOG0282|consen 412 FSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVA 491 (503)
T ss_pred EecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeE
Confidence 001 12345568999999999999999999999999999999999999999999999965 6899
Q ss_pred EecCc--eEEec
Q 036585 277 TGSSE--LSFWI 286 (304)
Q Consensus 277 s~~~d--~~iw~ 286 (304)
+++.+ |++|+
T Consensus 492 t~~w~G~Ikiwd 503 (503)
T KOG0282|consen 492 TCGWDGLIKIWD 503 (503)
T ss_pred ecccCceeEecC
Confidence 99999 88885
No 27
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.2e-36 Score=219.48 Aligned_cols=247 Identities=14% Similarity=0.237 Sum_probs=211.5
Q ss_pred eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEE
Q 036585 49 CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLL 128 (304)
Q Consensus 49 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 128 (304)
..++|++|...|.++.|++|.+++++++. ||.+.|||.-+...++.++.....|..++|+|.++++++|+.|....|
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSq---DGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQ---DGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSI 123 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeecc---CCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEE
Confidence 34789999999999999999999999999 999999999998888888888899999999999999999999999999
Q ss_pred EeCCccee------eceEEEeccc--eeEecCCC-eEEEecCCCeEEEEec---------CCCCCceEEEEec-CCcEEE
Q 036585 129 WDQRAEKC------QGLLRVQGRP--AAAYDDQG-LVFGYEKGPLDIFSVG---------GDISDANVVKFSN-DGRLML 189 (304)
Q Consensus 129 wd~~~~~~------~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~-~~~~l~ 189 (304)
|++.+... .+.+..+... ...+-+++ .+.+..+....+|+++ +|.+.|.++.++| +++.|+
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFv 203 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFV 203 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEE
Confidence 99986522 1222222222 23344444 5556677777788764 6999999999999 999999
Q ss_pred EeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeee--ccCCCCceEE
Q 036585 190 LTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWM--SFDTEPPVIK 267 (304)
Q Consensus 190 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~i~~~~ 267 (304)
+|+.|+..++||++.+....+|. +|...|++++|.|+|.-+++|+.|++.++||++..+.+..+. ....+|++++
T Consensus 204 Sg~cD~~aklWD~R~~~c~qtF~---ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~ 280 (343)
T KOG0286|consen 204 SGGCDKSAKLWDVRSGQCVQTFE---GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVA 280 (343)
T ss_pred ecccccceeeeeccCcceeEeec---ccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEE
Confidence 99999999999999999999999 899999999999999999999999999999999988887774 3346799999
Q ss_pred eCCCCcEEEEecCc--eEEecc-CCccccccccCCCC
Q 036585 268 WAPGSLMFVTGSSE--LSFWIP-DLSKLGAYVGRNRG 301 (304)
Q Consensus 268 ~~~~~~~l~s~~~d--~~iw~~-~~~~~~~~~~~~~g 301 (304)
||..|++|++|..| +.+||. ..+....+.||+.-
T Consensus 281 FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNR 317 (343)
T KOG0286|consen 281 FSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENR 317 (343)
T ss_pred EcccccEEEeeecCCceeEeeccccceEEEeeccCCe
Confidence 99999999999888 899986 66777888888763
No 28
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=9.9e-36 Score=233.42 Aligned_cols=262 Identities=26% Similarity=0.473 Sum_probs=228.4
Q ss_pred eeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeec
Q 036585 19 EILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYF 98 (304)
Q Consensus 19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~ 98 (304)
..+.+++++++|++++.||.+++|++.+++....+..|...+..+.|+|+++.+++++. ++.|++|++.+++.+..+
T Consensus 13 ~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---~~~i~i~~~~~~~~~~~~ 89 (289)
T cd00200 13 TCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS---DKTIRLWDLETGECVRTL 89 (289)
T ss_pred EEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcC---CCeEEEEEcCcccceEEE
Confidence 34677889999999999999999999998888888899989999999999999999998 999999999998888888
Q ss_pred ccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEec--cceeEecCCC-eEEEec-CCCeEEEEec----
Q 036585 99 KGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQG-LVFGYE-KGPLDIFSVG---- 170 (304)
Q Consensus 99 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~-~~~~~~~~~~---- 170 (304)
..|...+.++.|+|+++++++++.++.+++||+++.+....+..+. ...+.+++++ .++... ++.+.+|++.
T Consensus 90 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~ 169 (289)
T cd00200 90 TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC 169 (289)
T ss_pred eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc
Confidence 8899999999999998889888889999999999877766665333 3356677754 344444 7888888765
Q ss_pred -----CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEE
Q 036585 171 -----GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAW 245 (304)
Q Consensus 171 -----~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~ 245 (304)
.+...+.++.|+|+++.+++++.+|.|++||+++++....+. .+...+.+++|+|++.++++++.||.|++|
T Consensus 170 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~ 246 (289)
T cd00200 170 VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR---GHENGVNSVAFSPDGYLLASGSEDGTIRVW 246 (289)
T ss_pred ceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchh---hcCCceEEEEEcCCCcEEEEEcCCCcEEEE
Confidence 355689999999999999999999999999999988888775 477799999999999899998889999999
Q ss_pred ecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEec
Q 036585 246 SVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWI 286 (304)
Q Consensus 246 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~ 286 (304)
|+.+++....+..|...|.+++|+|++++|++++.| +++|+
T Consensus 247 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 247 DLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999999888888999999999999999999999998 88874
No 29
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=9.9e-39 Score=235.92 Aligned_cols=224 Identities=18% Similarity=0.343 Sum_probs=200.9
Q ss_pred ccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccccccc
Q 036585 25 EVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDR 104 (304)
Q Consensus 25 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 104 (304)
-|...+++|..|++|+|||.++..+++.+.+|++.|.|+.| +.+.+++|++ |.+|++||+++++++.++-.|...
T Consensus 205 YDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSS---DsTvrvWDv~tge~l~tlihHcea 279 (499)
T KOG0281|consen 205 YDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSS---DSTVRVWDVNTGEPLNTLIHHCEA 279 (499)
T ss_pred ecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCC---CceEEEEeccCCchhhHHhhhcce
Confidence 35778999999999999999999999999999999999999 6778999998 999999999999999999999999
Q ss_pred EEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecC
Q 036585 105 VVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSND 184 (304)
Q Consensus 105 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 184 (304)
|..+.|+ ..++++++.|.++.+||+.....+.... .+.+|...|+.+.|+
T Consensus 280 VLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rr--------------------------VLvGHrAaVNvVdfd-- 329 (499)
T KOG0281|consen 280 VLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRR--------------------------VLVGHRAAVNVVDFD-- 329 (499)
T ss_pred eEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHH--------------------------HHhhhhhheeeeccc--
Confidence 9999997 4599999999999999998765332211 113688899999994
Q ss_pred CcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCc
Q 036585 185 GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPP 264 (304)
Q Consensus 185 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~ 264 (304)
.+++++++.|.+|++|++.+++.+.++. +|...|-|+.+ .++++++|+.|.+|++||+..|.+++.+.+|..-|.
T Consensus 330 ~kyIVsASgDRTikvW~~st~efvRtl~---gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvR 404 (499)
T KOG0281|consen 330 DKYIVSASGDRTIKVWSTSTCEFVRTLN---GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR 404 (499)
T ss_pred cceEEEecCCceEEEEeccceeeehhhh---cccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhh
Confidence 6699999999999999999999999998 79999988876 789999999999999999999999999999999999
Q ss_pred eEEeCCCCcEEEEecCc--eEEeccCCc
Q 036585 265 VIKWAPGSLMFVTGSSE--LSFWIPDLS 290 (304)
Q Consensus 265 ~~~~~~~~~~l~s~~~d--~~iw~~~~~ 290 (304)
++.| |.+.+++|+.| +++|++...
T Consensus 405 ciRF--d~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 405 CIRF--DNKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred heee--cCceeeeccccceEEEEecccc
Confidence 9999 66789999999 999998654
No 30
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.3e-35 Score=212.03 Aligned_cols=247 Identities=17% Similarity=0.322 Sum_probs=199.9
Q ss_pred ceeeeeccee---eEeeccc-CcEEEEeeCCCeEEEEecCC---cceeeeec-ccccceeEEEEccCCCeEEEEecCCCC
Q 036585 10 DKVSLELSEE---ILQSMEV-GIYLVTASDDESIRLYDVTA---ATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWD 81 (304)
Q Consensus 10 ~~~~~~~~~~---~i~~~~~-~~~l~~~~~d~~i~vw~~~~---~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~d 81 (304)
..+.+++|.+ .+.++|- |..||+++.|+.||+|+... -.+...+. +|+..|..++|+|.|++|++++. |
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF---D 82 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF---D 82 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeec---c
Confidence 3455667766 4677787 88999999999999999874 34444443 69999999999999999999998 9
Q ss_pred CceEEEEccCc--eeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEe
Q 036585 82 ESLRLLSLHDN--KYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGY 159 (304)
Q Consensus 82 ~~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (304)
.++.||.-..+ +++..+.+|...|.|++|+++|++||+++.|+.|.||.+..........
T Consensus 83 ~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~a------------------ 144 (312)
T KOG0645|consen 83 ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIA------------------ 144 (312)
T ss_pred ceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEe------------------
Confidence 99999987755 5788899999999999999999999999999999999987443322211
Q ss_pred cCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcC---CCceeEEEEeCCCCCCcceEEEEcCCCcEEEEe
Q 036585 160 EKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF---RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG 236 (304)
Q Consensus 160 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~---~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 236 (304)
.++.|...|..+.|+|...+|++++.|.+|++|.-. ...+..++. +|...|.+++|+|.|..|+++
T Consensus 145 --------VL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~---g~~~TVW~~~F~~~G~rl~s~ 213 (312)
T KOG0645|consen 145 --------VLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLD---GHENTVWSLAFDNIGSRLVSC 213 (312)
T ss_pred --------eeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEec---CccceEEEEEecCCCceEEEe
Confidence 234788999999999999999999999999999876 335566666 788899999999999999999
Q ss_pred cCCCcEEEEecCC-------Cce------------------ee------------------eeeccCCCCceEEeCCC-C
Q 036585 237 SGDGSVHAWSVRS-------GKE------------------VA------------------SWMSFDTEPPVIKWAPG-S 272 (304)
Q Consensus 237 ~~dg~i~v~d~~~-------~~~------------------~~------------------~~~~~~~~i~~~~~~~~-~ 272 (304)
+.|++++||-+.+ ++. +. .-..|...|++++|+|. .
T Consensus 214 sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~ 293 (312)
T KOG0645|consen 214 SDDGTVSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVS 293 (312)
T ss_pred cCCcceEeeeeccCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCC
Confidence 9999999997432 110 00 01246677899999994 6
Q ss_pred cEEEEecCc--eEEeccC
Q 036585 273 LMFVTGSSE--LSFWIPD 288 (304)
Q Consensus 273 ~~l~s~~~d--~~iw~~~ 288 (304)
..|++++.| +++|.+.
T Consensus 294 ~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 294 NRLASGGDDGIVNFWELE 311 (312)
T ss_pred CceeecCCCceEEEEEec
Confidence 788888888 8888763
No 31
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=7.6e-36 Score=221.43 Aligned_cols=270 Identities=13% Similarity=0.200 Sum_probs=223.1
Q ss_pred ceeeeecceee---EeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEE
Q 036585 10 DKVSLELSEEI---LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86 (304)
Q Consensus 10 ~~~~~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~v 86 (304)
....+.+|.+. +.|+.+|.+||||..+|.|+||...++.....+......+.=+.|+|.+..|++|+. ||.+.+
T Consensus 98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~---DGsvWm 174 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST---DGSVWM 174 (399)
T ss_pred ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecC---CCcEEE
Confidence 45566777765 456788999999999999999999999998888766778889999999999999998 999999
Q ss_pred EEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEec-------------cceeEecCC
Q 036585 87 LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-------------RPAAAYDDQ 153 (304)
Q Consensus 87 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------------~~~~~~~~~ 153 (304)
|.+.++...+.+.+|..++++=.|.|+|+.++++..||+|++||+.++++...+.... ...+..+.+
T Consensus 175 w~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e 254 (399)
T KOG0296|consen 175 WQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSE 254 (399)
T ss_pred EECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCC
Confidence 9999988889999999999999999999999999999999999999998877665211 112233444
Q ss_pred CeEEEecCCCeEEEEecC---------CCCCceEE---EEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcc
Q 036585 154 GLVFGYEKGPLDIFSVGG---------DISDANVV---KFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST 221 (304)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~---------~~~~v~~~---~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i 221 (304)
+.+........++..... +...+.++ .++..=.++++|+.||+|.+||+...+...... |...|
T Consensus 255 ~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~----he~~V 330 (399)
T KOG0296|consen 255 GVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE----HEDGV 330 (399)
T ss_pred ccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc----CCCce
Confidence 444444443333333222 33334444 445566788999999999999999888777776 88889
Q ss_pred eEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEecc
Q 036585 222 LEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIP 287 (304)
Q Consensus 222 ~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~ 287 (304)
+.+.|-+ ..+|++++.||.|+.||.++|+++..+.+|..+|.+++.+|+.++++|+|.| .+|+..
T Consensus 331 ~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 331 TKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred EEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 9999998 7899999999999999999999999999999999999999999999999999 777754
No 32
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.9e-36 Score=240.31 Aligned_cols=237 Identities=17% Similarity=0.309 Sum_probs=218.0
Q ss_pred eEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc
Q 036585 20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK 99 (304)
Q Consensus 20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~ 99 (304)
+..+++--+.|++|-..|...+|++..-.+++.+.-...+|..++|+..|..++.++.. -|.+-||+.++...+...+
T Consensus 270 aa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~k--lgQLlVweWqsEsYVlKQQ 347 (893)
T KOG0291|consen 270 AAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSK--LGQLLVWEWQSESYVLKQQ 347 (893)
T ss_pred eeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCc--cceEEEEEeeccceeeecc
Confidence 34566667899999999999999999999999999888899999999999999999974 6899999999999999999
Q ss_pred cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEE
Q 036585 100 GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVV 179 (304)
Q Consensus 100 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 179 (304)
+|...+.+++++|||+++++|+.||.|++||..++-+..++. .|++.|+.+
T Consensus 348 gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt-----------------------------eHts~Vt~v 398 (893)
T KOG0291|consen 348 GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT-----------------------------EHTSGVTAV 398 (893)
T ss_pred ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec-----------------------------cCCCceEEE
Confidence 999999999999999999999999999999999998877765 688999999
Q ss_pred EEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCC-cEEEEecCCCceeeeeec
Q 036585 180 KFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG-SVHAWSVRSGKEVASWMS 258 (304)
Q Consensus 180 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~v~d~~~~~~~~~~~~ 258 (304)
.|+..|+.+++++.||+|+.||+...+..+++..+ ......+++..|.|..+.+|+.|. .|++|++++|+.+..+.+
T Consensus 399 ~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P--~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG 476 (893)
T KOG0291|consen 399 QFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP--EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSG 476 (893)
T ss_pred EEEecCCEEEEeecCCeEEeeeecccceeeeecCC--CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcC
Confidence 99999999999999999999999999999999853 445677889999999999999887 599999999999999999
Q ss_pred cCCCCceEEeCCCCcEEEEecCc--eEEeccCC
Q 036585 259 FDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDL 289 (304)
Q Consensus 259 ~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~ 289 (304)
|.+||.+++|+|++..|+++|.| +++|++=.
T Consensus 477 HEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~ 509 (893)
T KOG0291|consen 477 HEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFS 509 (893)
T ss_pred CCCcceeeEEccccCeEEeccccceEEEEEeec
Confidence 99999999999999999999999 99998733
No 33
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8.1e-36 Score=228.11 Aligned_cols=231 Identities=21% Similarity=0.313 Sum_probs=204.2
Q ss_pred eEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc
Q 036585 20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK 99 (304)
Q Consensus 20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~ 99 (304)
.++|...|+||++++.|+++.+||..+++..+.+..|..+-..+.|-.+. .+++.+. |+.|+|+.+....++.++.
T Consensus 281 slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~-~F~ts~t---d~~i~V~kv~~~~P~~t~~ 356 (524)
T KOG0273|consen 281 SLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND-EFATSST---DGCIHVCKVGEDRPVKTFI 356 (524)
T ss_pred EEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCc-eEeecCC---CceEEEEEecCCCcceeee
Confidence 46788889999999999999999999999999999999887888997554 5666666 9999999999999999999
Q ss_pred cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEE
Q 036585 100 GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVV 179 (304)
Q Consensus 100 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 179 (304)
+|.++|.++.|.|.+.+|++++.|++++||..........+. .|...|..+
T Consensus 357 GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~-----------------------------~Hskei~t~ 407 (524)
T KOG0273|consen 357 GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ-----------------------------AHSKEIYTI 407 (524)
T ss_pred cccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh-----------------------------hhccceeeE
Confidence 999999999999999999999999999999987766655443 566778888
Q ss_pred EEecCC---------cEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC
Q 036585 180 KFSNDG---------RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG 250 (304)
Q Consensus 180 ~~~~~~---------~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~ 250 (304)
.|+|+| ..+++++.|++|++||+..+.++..+. .|..+|++++|+|+|+|+|+|+.||.|++|+.+++
T Consensus 408 ~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~---kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 408 KWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLM---KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG 484 (524)
T ss_pred eecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeec---cCCCceEEEEecCCCcEEEecCCCCeeEeccccch
Confidence 888854 478899999999999999999999998 69999999999999999999999999999999999
Q ss_pred ceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEecc
Q 036585 251 KEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIP 287 (304)
Q Consensus 251 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~ 287 (304)
+..+.+.+ .+.|..++|+.+|.+|..+-.| +.+-++
T Consensus 485 ~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 485 KLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred heeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 99998864 4569999999999988877777 665554
No 34
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-36 Score=238.00 Aligned_cols=239 Identities=15% Similarity=0.279 Sum_probs=220.4
Q ss_pred eeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeec
Q 036585 19 EILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYF 98 (304)
Q Consensus 19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~ 98 (304)
..|.++|...+++++-.+|.|.|||.++...++.+.-..-+|.+..|-+-.+.+++|+. |..|+||+.++++.+..|
T Consensus 17 KsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsD---D~~IrVfnynt~ekV~~F 93 (794)
T KOG0276|consen 17 KSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSD---DMQIRVFNYNTGEKVKTF 93 (794)
T ss_pred eeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecC---CceEEEEecccceeeEEe
Confidence 45788999999999999999999999999999999998999999999999999999999 999999999999999999
Q ss_pred ccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcce-eeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCce
Q 036585 99 KGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEK-CQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDAN 177 (304)
Q Consensus 99 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 177 (304)
..|.+.|.+++.+|...++++++.|-+|++||.+..- +.+.+ ++|...|.
T Consensus 94 eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtf-----------------------------eGH~HyVM 144 (794)
T KOG0276|consen 94 EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTF-----------------------------EGHEHYVM 144 (794)
T ss_pred eccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEE-----------------------------cCcceEEE
Confidence 9999999999999999999999999999999987652 22333 37888999
Q ss_pred EEEEec-CCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcC--CCcEEEEecCCCcEEEEecCCCceee
Q 036585 178 VVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP--EGMFVISGSGDGSVHAWSVRSGKEVA 254 (304)
Q Consensus 178 ~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~dg~i~v~d~~~~~~~~ 254 (304)
+++|+| |.+.|++++.|++|++|.+.+..+..++. +|...|+++.|-+ |..+|++|+.|.+|+|||.++..+++
T Consensus 145 qv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~---gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~ 221 (794)
T KOG0276|consen 145 QVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLE---GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQ 221 (794)
T ss_pred EEEecCCCccceeeeeccccEEEEEcCCCCCceeee---ccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHH
Confidence 999999 56789999999999999999999999999 8999999999988 44799999999999999999999999
Q ss_pred eeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCccc
Q 036585 255 SWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKL 292 (304)
Q Consensus 255 ~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~ 292 (304)
++.+|...|+.+.|+|.-..+++|++| ++||.-..-++
T Consensus 222 TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l 261 (794)
T KOG0276|consen 222 TLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKL 261 (794)
T ss_pred HhhcccccceEEEecCCCcEEEEecCCccEEEecCcceeh
Confidence 999999999999999999999999999 99997655443
No 35
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.4e-36 Score=245.27 Aligned_cols=237 Identities=21% Similarity=0.293 Sum_probs=196.4
Q ss_pred eEeecccCcEEEEeeCCCeEEEEecCC-----------------------------------------------------
Q 036585 20 ILQSMEVGIYLVTASDDESIRLYDVTA----------------------------------------------------- 46 (304)
Q Consensus 20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~----------------------------------------------------- 46 (304)
++.|++||+|||+||.|+.|+||.+..
T Consensus 272 ~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p 351 (712)
T KOG0283|consen 272 AMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLP 351 (712)
T ss_pred EEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCC
Confidence 367889999999999999999998754
Q ss_pred -------cceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcC-CCCEEE
Q 036585 47 -------ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCS-SKDCFI 118 (304)
Q Consensus 47 -------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~ 118 (304)
.++++.+.+|.+.|..+.|+.++ +|++++. |.+|++|++...++++.|. |.+.|+|++|+| |.++|+
T Consensus 352 ~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSM---DKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFi 426 (712)
T KOG0283|consen 352 LKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSM---DKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFI 426 (712)
T ss_pred CccccccccchhhhhccchhheecccccCC-eeEeccc---cccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEe
Confidence 02234567899999999999655 7888887 9999999999999999998 999999999999 888999
Q ss_pred EcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEE
Q 036585 119 SGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIH 198 (304)
Q Consensus 119 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 198 (304)
+|+-||.++||++...+...... -..-|++++|.|||+..++|+.+|.++
T Consensus 427 SGSLD~KvRiWsI~d~~Vv~W~D------------------------------l~~lITAvcy~PdGk~avIGt~~G~C~ 476 (712)
T KOG0283|consen 427 SGSLDGKVRLWSISDKKVVDWND------------------------------LRDLITAVCYSPDGKGAVIGTFNGYCR 476 (712)
T ss_pred ecccccceEEeecCcCeeEeehh------------------------------hhhhheeEEeccCCceEEEEEeccEEE
Confidence 99999999999998776554332 225789999999999999999999999
Q ss_pred EEEcCCCceeEEEEeCC-----CCCCcceEEEEcCC-CcEEEEecCCCcEEEEecCCCceeeeeeccCCC--CceEEeCC
Q 036585 199 VLDSFRGTLLSTYNVKP-----VSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGKEVASWMSFDTE--PPVIKWAP 270 (304)
Q Consensus 199 ~~d~~~~~~~~~~~~~~-----~~~~~i~~~~~s~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~--i~~~~~~~ 270 (304)
+|++...+......... .....|+.+.|.|. ...+++.+.|..|||||.++.+++..++++... -....|+.
T Consensus 477 fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~ 556 (712)
T KOG0283|consen 477 FYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS 556 (712)
T ss_pred EEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc
Confidence 99998877766655321 11237999999984 345777889999999999988888888766433 34567999
Q ss_pred CCcEEEEecCc--eEEeccCCcc
Q 036585 271 GSLMFVTGSSE--LSFWIPDLSK 291 (304)
Q Consensus 271 ~~~~l~s~~~d--~~iw~~~~~~ 291 (304)
||++|+++++| +.||..+...
T Consensus 557 Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 557 DGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred CCCEEEEeecCceEEEEeCCCCc
Confidence 99999999999 8888875433
No 36
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.3e-37 Score=224.13 Aligned_cols=268 Identities=19% Similarity=0.300 Sum_probs=204.7
Q ss_pred ecceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeec--------ccccceeEEEEccCCCeEEEEecCCCCCceEE
Q 036585 15 ELSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTIN--------SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86 (304)
Q Consensus 15 ~~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~v 86 (304)
+.|.+...|+|||+||++|+.||.|.+||..+|+....++ .+..+|.|++|+.|...+++|+. ||.|++
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsq---DGkIKv 289 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQ---DGKIKV 289 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCc---CCcEEE
Confidence 4467788999999999999999999999999988665433 46789999999999999999999 999999
Q ss_pred EEccCceeeeecc-cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccc--eeEecCCC--eEEEecC
Q 036585 87 LSLHDNKYSRYFK-GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQG--LVFGYEK 161 (304)
Q Consensus 87 wd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~ 161 (304)
|.+++|.+++.|. .|+..|+|+.|+.|+..+++++.|.++++.-+.++++...++.+... ...+.++| .+....+
T Consensus 290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence 9999999999987 89999999999999999999999999999999999999888733222 12233333 2223334
Q ss_pred CCeEEEEecC-----------CCCCceEEEEec-CCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCC
Q 036585 162 GPLDIFSVGG-----------DISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE 229 (304)
Q Consensus 162 ~~~~~~~~~~-----------~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 229 (304)
+.+++|+.+. ...+|+.+-.-| +...++++...+++++.++ .|+.++.+....-..+...+++.||.
T Consensus 370 gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpk 448 (508)
T KOG0275|consen 370 GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPK 448 (508)
T ss_pred ccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCC
Confidence 4444443321 122333333333 2233444444444444443 33444444432223445566789999
Q ss_pred CcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEec
Q 036585 230 GMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWI 286 (304)
Q Consensus 230 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~ 286 (304)
|.++++.++|+.++.|...+|++-..+.-|...+-.++-+|..+.+|+-++| +++|.
T Consensus 449 GewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 449 GEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999999999999999999999999999999999999999999999999999 88885
No 37
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5.3e-34 Score=221.10 Aligned_cols=278 Identities=15% Similarity=0.255 Sum_probs=221.1
Q ss_pred eeeecceeeEeeccc---C-cEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEE
Q 036585 12 VSLELSEEILQSMEV---G-IYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 87 (304)
Q Consensus 12 ~~~~~~~~~i~~~~~---~-~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vw 87 (304)
-.+.+|...+..... . =+++|++.|++|.+|+-..-+...+++.|..-|+|+.|+|||+++++++. ||.+.+|
T Consensus 141 Gei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs---Dgki~iy 217 (603)
T KOG0318|consen 141 GEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS---DGKIYIY 217 (603)
T ss_pred ceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC---CccEEEE
Confidence 345666666554432 2 37999999999999997777888889999999999999999999999999 9999999
Q ss_pred EccCceeeeecc---cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccc-----eeEecCCCeEEEe
Q 036585 88 SLHDNKYSRYFK---GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP-----AAAYDDQGLVFGY 159 (304)
Q Consensus 88 d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 159 (304)
|-.+++.+..+. +|++.|.+++|+||++.+++++.|.+++|||+.+.+.++.+...... -..|..+.++...
T Consensus 218 DGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVS 297 (603)
T KOG0318|consen 218 DGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVS 297 (603)
T ss_pred cCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEE
Confidence 999999999887 89999999999999999999999999999999999888877654331 2233434444433
Q ss_pred cCCCeE---------EEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEE-----------EEeC-----
Q 036585 160 EKGPLD---------IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLST-----------YNVK----- 214 (304)
Q Consensus 160 ~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-----------~~~~----- 214 (304)
-.+.+. +..+.+|...|+++..+|++++|++|+.||.|.-||..++..-+. +...
T Consensus 298 l~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~ 377 (603)
T KOG0318|consen 298 LSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGEL 377 (603)
T ss_pred cCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcE
Confidence 344443 445668999999999999999999999999999999765432100 0000
Q ss_pred --------------------------------------C------------------------CCCCcceEEEEcCCCcE
Q 036585 215 --------------------------------------P------------------------VSRNSTLEASFSPEGMF 232 (304)
Q Consensus 215 --------------------------------------~------------------------~~~~~i~~~~~s~~~~~ 232 (304)
+ .......+++++|+++.
T Consensus 378 ~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~ 457 (603)
T KOG0318|consen 378 FTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSE 457 (603)
T ss_pred EEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCE
Confidence 0 00112445789999999
Q ss_pred EEEecCCCcEEEEecCCCce--eeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCccc
Q 036585 233 VISGSGDGSVHAWSVRSGKE--VASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKL 292 (304)
Q Consensus 233 l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~ 292 (304)
++.|+.|+.|+||.+..... ...+..|.++|+++++|||+.+||++... +.+|+...+..
T Consensus 458 vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~ 521 (603)
T KOG0318|consen 458 VAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV 521 (603)
T ss_pred EEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce
Confidence 99999999999999987554 33456799999999999999999999887 88999876655
No 38
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=7.6e-35 Score=207.14 Aligned_cols=259 Identities=15% Similarity=0.224 Sum_probs=214.3
Q ss_pred ecceeeEeecccCcEEEEeeCCCeEEEEecCCcceeee--ecccccceeEEEEccC-CCeEEEEecCCCCCceEEEEccC
Q 036585 15 ELSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKT--INSKKYGVDLVCFTSH-PTTVIYSSKNGWDESLRLLSLHD 91 (304)
Q Consensus 15 ~~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~l~~~~~~~~d~~i~vwd~~~ 91 (304)
..+...+.+..+|..|++|+.|+++++|+++..+.... ..+|.+.|-.++|+|. ...+++++. |.+|++||++.
T Consensus 20 ~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~---dk~ir~wd~r~ 96 (313)
T KOG1407|consen 20 VQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASG---DKTIRIWDIRS 96 (313)
T ss_pred hhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecC---CceEEEEEecc
Confidence 34556789999999999999999999999987755443 5678889999999984 556777777 99999999999
Q ss_pred ceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEec-cceeEecCCC--eEEEecCCCeEEE-
Q 036585 92 NKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDDQG--LVFGYEKGPLDIF- 167 (304)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~- 167 (304)
+++........+.+ -+.|+|+|++++.++.|..|.+.|.++.+.....+... ....++..++ +++....|.+.+.
T Consensus 97 ~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILs 175 (313)
T KOG1407|consen 97 GKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILS 175 (313)
T ss_pred CcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEe
Confidence 99988887555554 47899999999999999999999999887765544322 1223333333 2223333455444
Q ss_pred --------EecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC
Q 036585 168 --------SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD 239 (304)
Q Consensus 168 --------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 239 (304)
.++.|.....|+.|+|+|++|++|+.|..+.+||+...-+.+.+. -+.-+|..+.||.||++||+|++|
T Consensus 176 ypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is---RldwpVRTlSFS~dg~~lASaSED 252 (313)
T KOG1407|consen 176 YPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS---RLDWPVRTLSFSHDGRMLASASED 252 (313)
T ss_pred ccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec---cccCceEEEEeccCcceeeccCcc
Confidence 456789999999999999999999999999999999888888887 588999999999999999999999
Q ss_pred CcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc
Q 036585 240 GSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE 281 (304)
Q Consensus 240 g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 281 (304)
..|-|=++++|..+.+++ +.++...++|+|...+||-+++|
T Consensus 253 h~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 253 HFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 999999999999998886 88999999999999999998877
No 39
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7.1e-36 Score=221.37 Aligned_cols=217 Identities=18% Similarity=0.255 Sum_probs=200.9
Q ss_pred ceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEE
Q 036585 48 TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVL 127 (304)
Q Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 127 (304)
++.+.+++|.+.|.|+++.|....+++++. |++|+|||+.+++...++.+|...|..+++++...|+++++.|+.|+
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~---DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSA---DRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCC---CceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence 445667899999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred EEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCce
Q 036585 128 LWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL 207 (304)
Q Consensus 128 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 207 (304)
.||++..+.++.+. +|.+.|.+++.+|.-..|++|+.|.++++||+++...
T Consensus 219 CwDLe~nkvIR~Yh-----------------------------GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~ 269 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYH-----------------------------GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS 269 (460)
T ss_pred EEechhhhhHHHhc-----------------------------cccceeEEEeccccceeEEecCCcceEEEeeecccce
Confidence 99999988877664 7889999999999999999999999999999999999
Q ss_pred eEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc-eEEec
Q 036585 208 LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE-LSFWI 286 (304)
Q Consensus 208 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-~~iw~ 286 (304)
+..+. +|..+|.++.+.|-...+++|+.|++|++||++.++....+..|...+.+++.+|....+|+++.| ++-|.
T Consensus 270 V~~l~---GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~ 346 (460)
T KOG0285|consen 270 VHVLS---GHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWK 346 (460)
T ss_pred EEEec---CCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceecc
Confidence 99998 899999999999988889999999999999999999999999999999999999999999999999 99998
Q ss_pred cC-CccccccccCC
Q 036585 287 PD-LSKLGAYVGRN 299 (304)
Q Consensus 287 ~~-~~~~~~~~~~~ 299 (304)
+. ...+..+.+|+
T Consensus 347 ~p~g~f~~nlsgh~ 360 (460)
T KOG0285|consen 347 LPEGEFLQNLSGHN 360 (460)
T ss_pred CCccchhhcccccc
Confidence 84 44455666554
No 40
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.9e-36 Score=239.03 Aligned_cols=239 Identities=22% Similarity=0.355 Sum_probs=210.3
Q ss_pred eeecceeeEeecc---cCcEEEEeeCCCeEEEEecCCc----ceeeeecccccceeEEEEccCC-CeEEEEecCCCCCce
Q 036585 13 SLELSEEILQSME---VGIYLVTASDDESIRLYDVTAA----TCLKTINSKKYGVDLVCFTSHP-TTVIYSSKNGWDESL 84 (304)
Q Consensus 13 ~~~~~~~~i~~~~---~~~~l~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~d~~i 84 (304)
.+++|.+.+.... .|.+|+|++.|.++++|.++++ .++....+|...|.+++++..+ .+|++++. |.++
T Consensus 360 ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~---D~tl 436 (775)
T KOG0319|consen 360 IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQ---DCTL 436 (775)
T ss_pred EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecC---CceE
Confidence 6788887765544 5789999999999999987543 3456678999999999998755 46777777 9999
Q ss_pred EEEEccCcee-----e----eecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCe
Q 036585 85 RLLSLHDNKY-----S----RYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGL 155 (304)
Q Consensus 85 ~vwd~~~~~~-----~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (304)
++|++...+. . .....|...|.+++.+|+.+++++||.|++.+||+++......++.
T Consensus 437 K~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs-------------- 502 (775)
T KOG0319|consen 437 KLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS-------------- 502 (775)
T ss_pred EEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEee--------------
Confidence 9999976221 1 1234699999999999999999999999999999999666655554
Q ss_pred EEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEE
Q 036585 156 VFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS 235 (304)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 235 (304)
+|...+.++.|+|..+.+++++.|++|++|.+.+..+++++. +|...|..+.|-.+++.|++
T Consensus 503 ---------------GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~e---GH~~aVlra~F~~~~~qliS 564 (775)
T KOG0319|consen 503 ---------------GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFE---GHTSAVLRASFIRNGKQLIS 564 (775)
T ss_pred ---------------CCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeec---CccceeEeeeeeeCCcEEEe
Confidence 899999999999999999999999999999999999999999 89999999999999999999
Q ss_pred ecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEec
Q 036585 236 GSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWI 286 (304)
Q Consensus 236 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~ 286 (304)
++.||.|++|++++++++.++..|...|+++.-+|...+++||+.| +.+|.
T Consensus 565 ~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 565 AGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred ccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 9999999999999999999999999999999999999999999999 67774
No 41
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=9e-34 Score=249.51 Aligned_cols=261 Identities=17% Similarity=0.260 Sum_probs=208.5
Q ss_pred eeEeecccCcEEEEeeCCCeEEEEecCCc----c----eeeeecccccceeEEEEccC-CCeEEEEecCCCCCceEEEEc
Q 036585 19 EILQSMEVGIYLVTASDDESIRLYDVTAA----T----CLKTINSKKYGVDLVCFTSH-PTTVIYSSKNGWDESLRLLSL 89 (304)
Q Consensus 19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~----~----~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~d~~i~vwd~ 89 (304)
..+.|+++|++||+|+.|+.|+||+..+. . +...+.. ...+.+++|++. +..|++++. |+.|++||+
T Consensus 487 ~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~las~~~---Dg~v~lWd~ 562 (793)
T PLN00181 487 CAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSYIKSQVASSNF---EGVVQVWDV 562 (793)
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEeccCCCCEEEEEeC---CCeEEEEEC
Confidence 34778899999999999999999997532 1 1222333 457899999874 678888888 999999999
Q ss_pred cCceeeeecccccccEEEEEEcC-CCCEEEEcccCCeEEEEeCCcceeeceEEEecc-ceeEe-cCCC--eEEEecCCCe
Q 036585 90 HDNKYSRYFKGHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAY-DDQG--LVFGYEKGPL 164 (304)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~-~~~~--~~~~~~~~~~ 164 (304)
.+++.+..+.+|.+.|++++|+| ++.+|++|+.|++|++||++++.....+..... ..+.+ .+++ .+.+..++.+
T Consensus 563 ~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I 642 (793)
T PLN00181 563 ARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKV 642 (793)
T ss_pred CCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeE
Confidence 99999999999999999999997 788999999999999999998877766654322 23344 2333 4556677788
Q ss_pred EEEEec----------CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCC------ceeEEEEeCCCCCCcceEEEEcC
Q 036585 165 DIFSVG----------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG------TLLSTYNVKPVSRNSTLEASFSP 228 (304)
Q Consensus 165 ~~~~~~----------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~------~~~~~~~~~~~~~~~i~~~~~s~ 228 (304)
.+|++. +|...|.++.|. ++.+|++++.|++|++||++.+ +.+..+. +|...+..++|+|
T Consensus 643 ~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~---gh~~~i~~v~~s~ 718 (793)
T PLN00181 643 YYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM---GHTNVKNFVGLSV 718 (793)
T ss_pred EEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc---CCCCCeeEEEEcC
Confidence 888764 466789999997 6788999999999999999753 4555565 6888899999999
Q ss_pred CCcEEEEecCCCcEEEEecCCCceeeee-------------eccCCCCceEEeCCCCcEEEEecCc--eEEecc
Q 036585 229 EGMFVISGSGDGSVHAWSVRSGKEVASW-------------MSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIP 287 (304)
Q Consensus 229 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~-------------~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~ 287 (304)
++++|++|+.|+.|++|+.....++..+ ..+...|.+++|+|++..|++|+.+ ++||++
T Consensus 719 ~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 719 SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 9999999999999999998765443222 2344569999999999999999988 888875
No 42
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-34 Score=206.31 Aligned_cols=251 Identities=15% Similarity=0.154 Sum_probs=209.1
Q ss_pred eeeecceeeE---eecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEE
Q 036585 12 VSLELSEEIL---QSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 88 (304)
Q Consensus 12 ~~~~~~~~~i---~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd 88 (304)
+.+++|+..+ ....+|++|++++.|.+..||-..+|+.+-++.+|++.|.|++...+.+.+++|+. |.++++||
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSA---D~t~kLWD 80 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSA---DQTAKLWD 80 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccc---cceeEEEE
Confidence 5677888775 45567999999999999999998899999999999999999999999999999999 99999999
Q ss_pred ccCceeeeecccccccEEEEEEcCCCCEEEEccc-----CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCC
Q 036585 89 LHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSL-----DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGP 163 (304)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (304)
+++|+++..++ ...+|..+.|+++|++++.... .+.|.++|++.......-.
T Consensus 81 v~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~---------------------- 137 (327)
T KOG0643|consen 81 VETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSE---------------------- 137 (327)
T ss_pred cCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhccc----------------------
Confidence 99999999887 6678999999999998777653 4679999988543211100
Q ss_pred eEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEE
Q 036585 164 LDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVH 243 (304)
Q Consensus 164 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 243 (304)
-.+..+..+.+.++..-|.|-++++++|..+|.|..||.++++....-.. .|...|+.++++||..++++++.|.+-+
T Consensus 138 ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~--~h~~~Ind~q~s~d~T~FiT~s~Dttak 215 (327)
T KOG0643|consen 138 EPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDE--EHSSKINDLQFSRDRTYFITGSKDTTAK 215 (327)
T ss_pred CceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechh--hhccccccccccCCcceEEecccCccce
Confidence 01122234557899999999999999999999999999999865543322 5788999999999999999999999999
Q ss_pred EEecCCCce-------------------------------------------------------eeeeeccCCCCceEEe
Q 036585 244 AWSVRSGKE-------------------------------------------------------VASWMSFDTEPPVIKW 268 (304)
Q Consensus 244 v~d~~~~~~-------------------------------------------------------~~~~~~~~~~i~~~~~ 268 (304)
+||..+.+. +..+++|-+||++++|
T Consensus 216 l~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAf 295 (327)
T KOG0643|consen 216 LVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAF 295 (327)
T ss_pred eeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEE
Confidence 999876442 2234688899999999
Q ss_pred CCCCcEEEEecCc--eEEeccCCc
Q 036585 269 APGSLMFVTGSSE--LSFWIPDLS 290 (304)
Q Consensus 269 ~~~~~~l~s~~~d--~~iw~~~~~ 290 (304)
+|+|+..++|++| +++..++.+
T Consensus 296 hPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 296 HPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred CCCCcccccCCCCceEEEEEeccc
Confidence 9999999999999 888877654
No 43
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.2e-35 Score=238.74 Aligned_cols=267 Identities=16% Similarity=0.216 Sum_probs=222.0
Q ss_pred eEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc
Q 036585 20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK 99 (304)
Q Consensus 20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~ 99 (304)
.+.|+|.+.++++|+.|-.|+||++++.+++.++.+|-+-|..+.|++.-..+++++. |.+|+||+..+++++..+.
T Consensus 56 gv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASD---DQTIrIWNwqsr~~iavlt 132 (1202)
T KOG0292|consen 56 GVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASD---DQTIRIWNWQSRKCIAVLT 132 (1202)
T ss_pred eeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccC---CCeEEEEeccCCceEEEEe
Confidence 4678899999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEec-CCCeEEEecCCCeEEEEecCCCCCceE
Q 036585 100 GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYD-DQGLVFGYEKGPLDIFSVGGDISDANV 178 (304)
Q Consensus 100 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~ 178 (304)
+|...|.|..|+|....++++|-|.+|++||+..-+....-...-...+... .+..++ .....+.-+.+++|...|+-
T Consensus 133 GHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLf-g~~DaVVK~VLEGHDRGVNw 211 (1202)
T KOG0292|consen 133 GHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLF-GQTDAVVKHVLEGHDRGVNW 211 (1202)
T ss_pred cCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhc-CCcCeeeeeeecccccccce
Confidence 9999999999999999999999999999999864332211110000000000 111111 22234456778999999999
Q ss_pred EEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeec
Q 036585 179 VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMS 258 (304)
Q Consensus 179 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 258 (304)
++|+|.-.++++|+.|..|++|.+...+ ......-.+|.+.|.++-|+|..+++++.++|++|+|||+...+.+.+++.
T Consensus 212 aAfhpTlpliVSG~DDRqVKlWrmnetK-aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrr 290 (1202)
T KOG0292|consen 212 AAFHPTLPLIVSGADDRQVKLWRMNETK-AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRR 290 (1202)
T ss_pred EEecCCcceEEecCCcceeeEEEecccc-ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeec
Confidence 9999999999999999999999986433 333333347999999999999999999999999999999999999999987
Q ss_pred cCCCCceEEeCCCCcEEEEecCc-eEEeccCCcc
Q 036585 259 FDTEPPVIKWAPGSLMFVTGSSE-LSFWIPDLSK 291 (304)
Q Consensus 259 ~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~~~~~ 291 (304)
.....+.++-+|..++++.|.+. +.+|.++.++
T Consensus 291 endRFW~laahP~lNLfAAgHDsGm~VFkleREr 324 (1202)
T KOG0292|consen 291 ENDRFWILAAHPELNLFAAGHDSGMIVFKLERER 324 (1202)
T ss_pred cCCeEEEEEecCCcceeeeecCCceEEEEEcccC
Confidence 78899999999999999988877 7888777554
No 44
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.5e-36 Score=223.31 Aligned_cols=237 Identities=18% Similarity=0.280 Sum_probs=205.6
Q ss_pred cceeeeecceeeEeeccc-CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEE
Q 036585 9 EDKVSLELSEEILQSMEV-GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 87 (304)
Q Consensus 9 ~~~~~~~~~~~~i~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vw 87 (304)
+....+.+|.+.+.+... .+.|++|+.|.+|+|||+++++++.++-+|...|..+.|+ ..++++++. |.++.+|
T Consensus 228 ~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSk---DrsiaVW 302 (499)
T KOG0281|consen 228 ECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSK---DRSIAVW 302 (499)
T ss_pred HHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecC---CceeEEE
Confidence 345567889998888875 6788999999999999999999999999999999999995 668999998 9999999
Q ss_pred EccCce---eeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCe
Q 036585 88 SLHDNK---YSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPL 164 (304)
Q Consensus 88 d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (304)
|+.... +.+.+.+|...|..+.|+ .+++++++.|.+|++|++.+...++.+.
T Consensus 303 dm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~----------------------- 357 (499)
T KOG0281|consen 303 DMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLN----------------------- 357 (499)
T ss_pred eccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhh-----------------------
Confidence 998754 456678999999999995 5699999999999999999998887775
Q ss_pred EEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEE
Q 036585 165 DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHA 244 (304)
Q Consensus 165 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v 244 (304)
+|...|-|+.+ .++++++|+.|.+|++||+..|.++..++ +|+.-|.++.| |.+.+++|+.||.|+|
T Consensus 358 ------gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLe---GHEeLvRciRF--d~krIVSGaYDGkikv 424 (499)
T KOG0281|consen 358 ------GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE---GHEELVRCIRF--DNKRIVSGAYDGKIKV 424 (499)
T ss_pred ------cccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHh---chHHhhhheee--cCceeeeccccceEEE
Confidence 67888888888 68999999999999999999999999999 89999999999 5678999999999999
Q ss_pred EecCCCc---------eeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCc
Q 036585 245 WSVRSGK---------EVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLS 290 (304)
Q Consensus 245 ~d~~~~~---------~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~ 290 (304)
||+..+. ++..+..|.+.|..+.| |...+++++.| |.||++.-.
T Consensus 425 Wdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 425 WDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred EecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCC
Confidence 9997653 34555779999999999 55677777766 999998543
No 45
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=7.5e-36 Score=224.78 Aligned_cols=267 Identities=22% Similarity=0.349 Sum_probs=225.5
Q ss_pred ceeeEeecccCcEEEEeeCCCeEEEEecCCcc--eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee
Q 036585 17 SEEILQSMEVGIYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY 94 (304)
Q Consensus 17 ~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~ 94 (304)
.-..+.|.++...|++|+.|..|++|++...+ .+.++.+..++++.+.|.++++++++++. |+.+++|++.+.+.
T Consensus 177 ev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~---d~~~r~Wnvd~~r~ 253 (459)
T KOG0288|consen 177 EVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASN---DKNLRLWNVDSLRL 253 (459)
T ss_pred ccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecC---CCceeeeeccchhh
Confidence 34568888888999999999999999987665 67788888899999999999999999998 99999999999999
Q ss_pred eeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEec-cceeEecCCCeEEEecCCCeEEEEecC--
Q 036585 95 SRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDDQGLVFGYEKGPLDIFSVGG-- 171 (304)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 171 (304)
..++.+|++.|+++.|......+++|+.|.+|+.||+....+.....+.. ..-+...+...+-+-.++.++.|+...
T Consensus 254 ~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~ 333 (459)
T KOG0288|consen 254 RHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSAD 333 (459)
T ss_pred hhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCc
Confidence 99999999999999999877779999999999999999988776654322 223333344444555677788888653
Q ss_pred ------CCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCC-CCCcceEEEEcCCCcEEEEecCCCcEEE
Q 036585 172 ------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV-SRNSTLEASFSPEGMFVISGSGDGSVHA 244 (304)
Q Consensus 172 ------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~v 244 (304)
-.+.|+++..++++..+++++.|.++.+.|+++.+....+..... .....+.+.|||++.|+++|+.||.|+|
T Consensus 334 ~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~i 413 (459)
T KOG0288|consen 334 KTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYI 413 (459)
T ss_pred eeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEE
Confidence 236899999999999999999999999999999998888763211 2345888999999999999999999999
Q ss_pred EecCCCceeeeeeccCC--CCceEEeCCCCcEEEEecCc--eEEec
Q 036585 245 WSVRSGKEVASWMSFDT--EPPVIKWAPGSLMFVTGSSE--LSFWI 286 (304)
Q Consensus 245 ~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~s~~~d--~~iw~ 286 (304)
|++.++++...+..... .|++++|+|.|..|++++.+ +.+|.
T Consensus 414 W~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 414 WSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 99999999887755444 59999999999999999998 88883
No 46
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.3e-35 Score=239.09 Aligned_cols=244 Identities=17% Similarity=0.254 Sum_probs=218.2
Q ss_pred eEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc
Q 036585 20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK 99 (304)
Q Consensus 20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~ 99 (304)
.++|+|...+++++-..|.|++||.+-+.++..+..|.++|..++|+|.+..+++|+. |..|+||+..+.+++.++.
T Consensus 14 glsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGD---DykIkVWnYk~rrclftL~ 90 (1202)
T KOG0292|consen 14 GLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGD---DYKIKVWNYKTRRCLFTLL 90 (1202)
T ss_pred ceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCC---ccEEEEEecccceehhhhc
Confidence 4789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEE
Q 036585 100 GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVV 179 (304)
Q Consensus 100 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 179 (304)
+|-+.|..+.|++.-.+++++|.|.+|+||+..+.+++..+. +|...|.|.
T Consensus 91 GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt-----------------------------GHnHYVMcA 141 (1202)
T KOG0292|consen 91 GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT-----------------------------GHNHYVMCA 141 (1202)
T ss_pred cccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe-----------------------------cCceEEEee
Confidence 999999999999999999999999999999999999987776 788899999
Q ss_pred EEecCCcEEEEeeCCCeEEEEEcCCCc---------------------------eeEEEEeCCCCCCcceEEEEcCCCcE
Q 036585 180 KFSNDGRLMLLTTMEGHIHVLDSFRGT---------------------------LLSTYNVKPVSRNSTLEASFSPEGMF 232 (304)
Q Consensus 180 ~~~~~~~~l~~~~~dg~i~~~d~~~~~---------------------------~~~~~~~~~~~~~~i~~~~~s~~~~~ 232 (304)
+|+|....+++++.|.+|++||+..-+ .+..+ ...+|...|+-++|+|.-..
T Consensus 142 qFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~-VLEGHDRGVNwaAfhpTlpl 220 (1202)
T KOG0292|consen 142 QFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKH-VLEGHDRGVNWAAFHPTLPL 220 (1202)
T ss_pred ccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeee-eecccccccceEEecCCcce
Confidence 999999999999999999999974211 01111 12378899999999999999
Q ss_pred EEEecCCCcEEEEecCCCce--eeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCcc-ccccc
Q 036585 233 VISGSGDGSVHAWSVRSGKE--VASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSK-LGAYV 296 (304)
Q Consensus 233 l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~-~~~~~ 296 (304)
+++|+.|..|++|.+...+. +.+..+|.+.|+++-|+|...++++.|+| ++||+.+.++ +++++
T Consensus 221 iVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr 289 (1202)
T KOG0292|consen 221 IVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR 289 (1202)
T ss_pred EEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeee
Confidence 99999999999999976553 56678999999999999999999999999 9999997654 44443
No 47
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.1e-34 Score=207.40 Aligned_cols=260 Identities=16% Similarity=0.215 Sum_probs=212.9
Q ss_pred eeeEeecc-cCcEEEEeeCCCeEEEEecCC-ccee-eeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee
Q 036585 18 EEILQSME-VGIYLVTASDDESIRLYDVTA-ATCL-KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY 94 (304)
Q Consensus 18 ~~~i~~~~-~~~~l~~~~~d~~i~vw~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~ 94 (304)
...++|+| ...+++.+|+|++||+|+++. +... +....|.++|.+++|+.+|..+++++. |+.+++||+.+++
T Consensus 30 IS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~---Dk~~k~wDL~S~Q- 105 (347)
T KOG0647|consen 30 ISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGC---DKQAKLWDLASGQ- 105 (347)
T ss_pred hheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeecc---CCceEEEEccCCC-
Confidence 34578888 466777999999999999986 3332 445578899999999999999999999 9999999999995
Q ss_pred eeecccccccEEEEEEcCCCC--EEEEcccCCeEEEEeCCcceeeceEEEeccce-eEecCCCeEEEecCCCeEEEEecC
Q 036585 95 SRYFKGHHDRVVLLSLCSSKD--CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA-AAYDDQGLVFGYEKGPLDIFSVGG 171 (304)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 171 (304)
+..+..|.++|.++.|-+... .|++|+.|++|+.||++...++..+.+++... +.....-.+++..+..+.++++++
T Consensus 106 ~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n 185 (347)
T KOG0647|consen 106 VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLEN 185 (347)
T ss_pred eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCC
Confidence 556777999999999987655 89999999999999999999888887766553 333444566777888888888865
Q ss_pred C-----------CCCceEEEEecCCcEEEEeeCCCeEEEEEcCCC--ceeEEEEeCCC---C---CCcceEEEEcCCCcE
Q 036585 172 D-----------ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG--TLLSTYNVKPV---S---RNSTLEASFSPEGMF 232 (304)
Q Consensus 172 ~-----------~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~--~~~~~~~~~~~---~---~~~i~~~~~s~~~~~ 232 (304)
. .-.+++++..++....+.|+-+|.+.+..+..+ +.-.+|+.+.. . -..|++++|+|.-..
T Consensus 186 ~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgt 265 (347)
T KOG0647|consen 186 PPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGT 265 (347)
T ss_pred CcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccce
Confidence 3 245789999999988999999999999988876 44455554321 1 235788999999999
Q ss_pred EEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEe-cCc
Q 036585 233 VISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTG-SSE 281 (304)
Q Consensus 233 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~~d 281 (304)
|++++.||+..+||-.....++....|..+|++..|+.+|.++|-+ +.|
T Consensus 266 lvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 266 LVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred EEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 9999999999999988888888888999999999999999988755 444
No 48
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=6.9e-35 Score=212.54 Aligned_cols=239 Identities=20% Similarity=0.350 Sum_probs=201.9
Q ss_pred eeeEeecccCcEEEEeeCCCeEEEEecCC------------------cceeeeecccccceeEEEEccCCCeEEEEecCC
Q 036585 18 EEILQSMEVGIYLVTASDDESIRLYDVTA------------------ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG 79 (304)
Q Consensus 18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~ 79 (304)
..+-.+++||.++|+|+.|.+|+|.|++. -..++++..|..+|+++.|+|....|++++.
T Consensus 115 cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~sr-- 192 (430)
T KOG0640|consen 115 CRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSR-- 192 (430)
T ss_pred eeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccC--
Confidence 34567899999999999999999999861 1346788899999999999999999999999
Q ss_pred CCCceEEEEccCcee---eeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeE
Q 036585 80 WDESLRLLSLHDNKY---SRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLV 156 (304)
Q Consensus 80 ~d~~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (304)
|++|+++|+..... .+.++ ...+|.++.|+|.|.+++.|....++++||+++.++...-...
T Consensus 193 -D~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd------------- 257 (430)
T KOG0640|consen 193 -DNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPD------------- 257 (430)
T ss_pred -CCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcc-------------
Confidence 99999999976432 23333 5678999999999999999999999999999998775433211
Q ss_pred EEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEe
Q 036585 157 FGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG 236 (304)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 236 (304)
..|...|+++.+++.+++.++++.||.|++||--+++++.++.... ....|.+..|..+++|+++.
T Consensus 258 -------------~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH-~gsevcSa~Ftkn~kyiLsS 323 (430)
T KOG0640|consen 258 -------------DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAH-GGSEVCSAVFTKNGKYILSS 323 (430)
T ss_pred -------------cccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhc-CCceeeeEEEccCCeEEeec
Confidence 2588899999999999999999999999999999999999887542 34678999999999999999
Q ss_pred cCCCcEEEEecCCCceeeee-------------------------------------------------eccCCCCceEE
Q 036585 237 SGDGSVHAWSVRSGKEVASW-------------------------------------------------MSFDTEPPVIK 267 (304)
Q Consensus 237 ~~dg~i~v~d~~~~~~~~~~-------------------------------------------------~~~~~~i~~~~ 267 (304)
+.|..+++|.+.+++++..+ .+|.+.++.+.
T Consensus 324 G~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~ 403 (430)
T KOG0640|consen 324 GKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIV 403 (430)
T ss_pred CCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEE
Confidence 99999999999887754433 26778888888
Q ss_pred eCCCCcEEEEecCc--eEEecc
Q 036585 268 WAPGSLMFVTGSSE--LSFWIP 287 (304)
Q Consensus 268 ~~~~~~~l~s~~~d--~~iw~~ 287 (304)
-+|.+..+++++.| .++|--
T Consensus 404 HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 404 HSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred eCCCCCceeeecccceeeeeee
Confidence 99999999999998 888853
No 49
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2.6e-34 Score=214.32 Aligned_cols=263 Identities=23% Similarity=0.340 Sum_probs=209.5
Q ss_pred CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCC---eEEEEecCCCCCceEEEEccCcee----eeecc
Q 036585 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT---TVIYSSKNGWDESLRLLSLHDNKY----SRYFK 99 (304)
Q Consensus 27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~~~~d~~i~vwd~~~~~~----~~~~~ 99 (304)
++.|++|++||.+++||.. |+...++.+|.+++..++|..... .+++++. |.++++|..+.++. ++.-+
T Consensus 115 ~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~---Dqtl~Lw~~~~~~~~~~~~~~~~ 190 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASM---DQTLRLWKWNVGENKVKALKVCR 190 (423)
T ss_pred CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecC---CceEEEEEecCchhhhhHHhHhc
Confidence 7899999999999999964 899999999999999888865444 4889988 99999999987753 33345
Q ss_pred cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEE
Q 036585 100 GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVV 179 (304)
Q Consensus 100 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 179 (304)
+|...|.++...+++..+++|+.|.++++|+..+... ..+..... .-..+...-........+..+.+|..+|.++
T Consensus 191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~-~~~E~~s~---~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V 266 (423)
T KOG0313|consen 191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEE-DELESSSN---RRRKKQKREKEGGTRTPLVTLEGHTEPVSSV 266 (423)
T ss_pred ccccceeEEEecCCCCeEEeecccceeeecccCCCcc-ccccccch---hhhhhhhhhhcccccCceEEecccccceeeE
Confidence 9999999999999999999999999999999332211 11110000 0000001111222344566788999999999
Q ss_pred EEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCc---eeeee
Q 036585 180 KFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGK---EVASW 256 (304)
Q Consensus 180 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~---~~~~~ 256 (304)
.|++ ...+++++.|.+|+.||+.++....++. ....++++.++|..++|++|+.|..|++||.+++. ...++
T Consensus 267 ~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~----~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~ 341 (423)
T KOG0313|consen 267 VWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT----TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSL 341 (423)
T ss_pred EEcC-CCceEeecccceEEEEEeecccceeeee----cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEee
Confidence 9998 6679999999999999999999998887 66789999999999999999999999999998754 35678
Q ss_pred eccCCCCceEEeCCCC-cEEEEecCc--eEEeccCCcc--ccccccCCCCC
Q 036585 257 MSFDTEPPVIKWAPGS-LMFVTGSSE--LSFWIPDLSK--LGAYVGRNRGC 302 (304)
Q Consensus 257 ~~~~~~i~~~~~~~~~-~~l~s~~~d--~~iw~~~~~~--~~~~~~~~~g~ 302 (304)
.+|.+.|.++.|+|.. .+|++++.| +++||....+ +..+.+|++-+
T Consensus 342 ~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKv 392 (423)
T KOG0313|consen 342 IGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKV 392 (423)
T ss_pred ecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceE
Confidence 9999999999999965 578899999 9999997655 66777776543
No 50
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.3e-34 Score=212.77 Aligned_cols=262 Identities=15% Similarity=0.241 Sum_probs=205.8
Q ss_pred cceeeeecceee---EeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceE
Q 036585 9 EDKVSLELSEEI---LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 85 (304)
Q Consensus 9 ~~~~~~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~ 85 (304)
...+.+..|... +...|+.++++||+.|..-.+|+..++.....+.+|+..|.++.|+.++.+|++|.- +|.|+
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdm---sG~v~ 131 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDM---SGKVL 131 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCC---CccEE
Confidence 345556666654 567788999999999999999999999999999999999999999999999999998 99999
Q ss_pred EEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeE
Q 036585 86 LLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLD 165 (304)
Q Consensus 86 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (304)
||+..++.....+......+.-+.|+|.+..|++|+.||.+.+|.+.++...+.+.
T Consensus 132 v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~------------------------ 187 (399)
T KOG0296|consen 132 VFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS------------------------ 187 (399)
T ss_pred EEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec------------------------
Confidence 99999998877776666788889999999999999999999999998876555554
Q ss_pred EEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeC-------------------------------
Q 036585 166 IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK------------------------------- 214 (304)
Q Consensus 166 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~------------------------------- 214 (304)
+|..++++=.|.|+|+.++++..||+|++||+.+++++..+...
T Consensus 188 -----Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~ 262 (399)
T KOG0296|consen 188 -----GHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNN 262 (399)
T ss_pred -----CCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEcc
Confidence 45566666666666666666666666666666666655554310
Q ss_pred -----------------CCCCCcceE---EEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcE
Q 036585 215 -----------------PVSRNSTLE---ASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLM 274 (304)
Q Consensus 215 -----------------~~~~~~i~~---~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 274 (304)
+.+...+.+ +.++..=.+.|+|+-||+|.|||+...++.... .|..+|..+.|-+ ..+
T Consensus 263 ~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~-t~~ 340 (399)
T KOG0296|consen 263 GSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLN-TDY 340 (399)
T ss_pred ccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec-cCCCceEEEEEcC-cch
Confidence 011122223 333334467889999999999999887765554 5889999999999 778
Q ss_pred EEEecCc--eEEeccCCcc-ccccccCCCCCCC
Q 036585 275 FVTGSSE--LSFWIPDLSK-LGAYVGRNRGCMD 304 (304)
Q Consensus 275 l~s~~~d--~~iw~~~~~~-~~~~~~~~~g~~d 304 (304)
|++++.+ ++.|+..... +..|.||..+++|
T Consensus 341 l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~ 373 (399)
T KOG0296|consen 341 LLTACANGKVRQWDARTGQLKFTYTGHQMGILD 373 (399)
T ss_pred heeeccCceEEeeeccccceEEEEecCchheeE
Confidence 8888888 8889886655 5689999988865
No 51
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=2.7e-35 Score=208.35 Aligned_cols=244 Identities=20% Similarity=0.362 Sum_probs=214.9
Q ss_pred ceeeeecceeeEeec---ccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEE
Q 036585 10 DKVSLELSEEILQSM---EVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86 (304)
Q Consensus 10 ~~~~~~~~~~~i~~~---~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~v 86 (304)
-.-++++|.+++-.. .+....|+++.|-+-+|||.-+|..++.+. |+.-|..++|+.|.++|++|+. +..++|
T Consensus 51 wigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~---ekllrv 126 (334)
T KOG0278|consen 51 WIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQ---EKLLRV 126 (334)
T ss_pred cEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccch---HHHhhh
Confidence 345678888876543 234567899999999999999999998886 7778999999999999999998 999999
Q ss_pred EEccCc-eeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeE
Q 036585 87 LSLHDN-KYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLD 165 (304)
Q Consensus 87 wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (304)
||++.. .+...+.+|++.|..+.|....+.+++++.|++||+||.+++..++.+...
T Consensus 127 fdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~---------------------- 184 (334)
T KOG0278|consen 127 FDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN---------------------- 184 (334)
T ss_pred hhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecC----------------------
Confidence 999875 467888999999999999998889999999999999999999998888643
Q ss_pred EEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEE
Q 036585 166 IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAW 245 (304)
Q Consensus 166 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~ 245 (304)
..|+++.++++|+++.++ ..+.|.+||..+-.+++.+. ....|.+..++|+...+++|++|..++.|
T Consensus 185 --------s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k----~P~nV~SASL~P~k~~fVaGged~~~~kf 251 (334)
T KOG0278|consen 185 --------SPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYK----MPCNVESASLHPKKEFFVAGGEDFKVYKF 251 (334)
T ss_pred --------CCCcceeeccCCCEEEEe-cCceeEEeccccccceeecc----CccccccccccCCCceEEecCcceEEEEE
Confidence 678999999999966554 56789999999999998887 56788999999999999999999999999
Q ss_pred ecCCCceeeee-eccCCCCceEEeCCCCcEEEEecCc--eEEeccCCccc
Q 036585 246 SVRSGKEVASW-MSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKL 292 (304)
Q Consensus 246 d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~ 292 (304)
|..+++.+..+ ++|.++|.|+.|+|+|...++||.| ++||.....+.
T Consensus 252 Dy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 252 DYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred eccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 99999999886 8999999999999999999999999 99998766554
No 52
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-34 Score=228.83 Aligned_cols=225 Identities=24% Similarity=0.300 Sum_probs=205.4
Q ss_pred eecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCc-eeeeeccc
Q 036585 22 QSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN-KYSRYFKG 100 (304)
Q Consensus 22 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~-~~~~~~~~ 100 (304)
.+.+--+++++|+.|..||||++++++.+..+..|.+-|.+++.+|..+++++++. |-.|++||.+.+ .+.+++.+
T Consensus 62 kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSD---Dm~iKlW~we~~wa~~qtfeG 138 (794)
T KOG0276|consen 62 KFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSD---DMTIKLWDWENEWACEQTFEG 138 (794)
T ss_pred eeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCC---ccEEEEeeccCceeeeeEEcC
Confidence 34455789999999999999999999999999999999999999999999999999 999999999875 67889999
Q ss_pred ccccEEEEEEcC-CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEE
Q 036585 101 HHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVV 179 (304)
Q Consensus 101 ~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 179 (304)
|...|.+++|+| |.+.+++++-|++|++|.+.+..+..++. +|...|+++
T Consensus 139 H~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~-----------------------------gHekGVN~V 189 (794)
T KOG0276|consen 139 HEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLE-----------------------------GHEKGVNCV 189 (794)
T ss_pred cceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeee-----------------------------ccccCcceE
Confidence 999999999999 67799999999999999998877655544 788999999
Q ss_pred EEecCC--cEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeee
Q 036585 180 KFSNDG--RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWM 257 (304)
Q Consensus 180 ~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 257 (304)
.|-+-| .+|++|+.|..|++||.++.+++.++. +|...|..+.|+|.-..+++|++||+++||+..+.+....+.
T Consensus 190 dyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLe---GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn 266 (794)
T KOG0276|consen 190 DYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLE---GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLN 266 (794)
T ss_pred EeccCCCcceEEecCCCceEEEeecchHHHHHHhh---cccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhh
Confidence 998754 699999999999999999999999999 899999999999999999999999999999999988888887
Q ss_pred ccCCCCceEEeCCCCcEEEEecCc
Q 036585 258 SFDTEPPVIKWAPGSLMFVTGSSE 281 (304)
Q Consensus 258 ~~~~~i~~~~~~~~~~~l~s~~~d 281 (304)
-.-.+++|++-.+.++.++.|.++
T Consensus 267 ~gleRvW~I~~~k~~~~i~vG~De 290 (794)
T KOG0276|consen 267 YGLERVWCIAAHKGDGKIAVGFDE 290 (794)
T ss_pred cCCceEEEEeecCCCCeEEEeccC
Confidence 777889999988888888888766
No 53
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-33 Score=226.86 Aligned_cols=270 Identities=17% Similarity=0.306 Sum_probs=230.2
Q ss_pred eeeeecceee---EeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEE
Q 036585 11 KVSLELSEEI---LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 87 (304)
Q Consensus 11 ~~~~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vw 87 (304)
...+.+|..- +.++.+...+++|+ .+++++|+..+.++++++... .+.+..|.|.++++++|.. .|.+.+|
T Consensus 366 ~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k---~Gel~vf 439 (888)
T KOG0306|consen 366 NIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTK---NGELQVF 439 (888)
T ss_pred eeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEecc---CCceEEE
Confidence 3555666554 44555566666665 468999999999999999755 7889999999999999998 9999999
Q ss_pred EccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcce-----eec--------eEEE-eccceeEecCC
Q 036585 88 SLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEK-----CQG--------LLRV-QGRPAAAYDDQ 153 (304)
Q Consensus 88 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~--------~~~~-~~~~~~~~~~~ 153 (304)
|+.+...+.+.+.|.+.|++++.+||+..+++|+.|.+|++||..--. ..+ .+.. ....++.++|+
T Consensus 440 dlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spd 519 (888)
T KOG0306|consen 440 DLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPD 519 (888)
T ss_pred EeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCC
Confidence 999999999999999999999999999999999999999999975221 111 1222 22346788999
Q ss_pred CeEE--EecCCCeEEE---------EecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcce
Q 036585 154 GLVF--GYEKGPLDIF---------SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTL 222 (304)
Q Consensus 154 ~~~~--~~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~ 222 (304)
+.++ +.-+..+++| .+.+|.-+|.++..+||++.+++|+.|..|++|-+.-|.+-+.+- +|...|+
T Consensus 520 gk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f---AHdDSvm 596 (888)
T KOG0306|consen 520 GKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF---AHDDSVM 596 (888)
T ss_pred CcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh---cccCcee
Confidence 8665 4446666665 455899999999999999999999999999999999999988888 7999999
Q ss_pred EEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCC
Q 036585 223 EASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDL 289 (304)
Q Consensus 223 ~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~ 289 (304)
++.|-|....+.+++.|+.|+-||-...+.+..+.+|...|+|++.+|+|.+++++|.| +++|.-.-
T Consensus 597 ~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 597 SVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred EEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999 99996543
No 54
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-34 Score=203.75 Aligned_cols=233 Identities=19% Similarity=0.263 Sum_probs=194.3
Q ss_pred Eeeccc-CcEEEEeeCCCeEEEEecC-CcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeec
Q 036585 21 LQSMEV-GIYLVTASDDESIRLYDVT-AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYF 98 (304)
Q Consensus 21 i~~~~~-~~~l~~~~~d~~i~vw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~ 98 (304)
+.+++. .+.+++++.||++++||.. ...+++.++.|...|.++.|++..+..+..++ ||++|++|+..-++.++++
T Consensus 66 V~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsS--WD~TiKLW~~~r~~Sv~Tf 143 (311)
T KOG0277|consen 66 VAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSS--WDGTIKLWDPNRPNSVQTF 143 (311)
T ss_pred eeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeec--cCCceEeecCCCCcceEee
Confidence 566665 5788999999999999965 34678999999999999999996655444442 6999999999999999999
Q ss_pred ccccccEEEEEEcC-CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCce
Q 036585 99 KGHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDAN 177 (304)
Q Consensus 99 ~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 177 (304)
.+|...|+...|+| .++++++++.|+++++||++.......+. .|...+.
T Consensus 144 ~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~-----------------------------ah~~Eil 194 (311)
T KOG0277|consen 144 NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE-----------------------------AHNSEIL 194 (311)
T ss_pred cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE-----------------------------eccceeE
Confidence 99999999999999 67799999999999999998654333333 4667889
Q ss_pred EEEEec-CCcEEEEeeCCCeEEEEEcCCCc-eeEEEEeCCCCCCcceEEEEcCC-CcEEEEecCCCcEEEEecCCC-cee
Q 036585 178 VVKFSN-DGRLMLLTTMEGHIHVLDSFRGT-LLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSG-KEV 253 (304)
Q Consensus 178 ~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~v~d~~~~-~~~ 253 (304)
++.|+. +...+++|+.|+.|+.||+++-+ ++..+. +|.-.|..++|||. ...||+++.|-+++|||.... ..+
T Consensus 195 ~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~---gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~ 271 (311)
T KOG0277|consen 195 CCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELN---GHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAI 271 (311)
T ss_pred eecccccCCcEEEecCCCceEEEEehhhccccceeec---CCceEEEEEecCcchhhHhhhccccceEEecccccchhhh
Confidence 999987 56788899999999999998754 455555 79999999999994 468999999999999999744 446
Q ss_pred eeeeccCCCCceEEeCC-CCcEEEEecCc--eEEecc
Q 036585 254 ASWMSFDTEPPVIKWAP-GSLMFVTGSSE--LSFWIP 287 (304)
Q Consensus 254 ~~~~~~~~~i~~~~~~~-~~~~l~s~~~d--~~iw~~ 287 (304)
.+...|..-+..+.|++ +..++|+++.| +.||+.
T Consensus 272 e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 272 ETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 66777888899999998 56799999999 888875
No 55
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.7e-34 Score=200.80 Aligned_cols=240 Identities=20% Similarity=0.281 Sum_probs=195.3
Q ss_pred cceeeEeeccc-CcEEEEee-------CCCeEEEEecCCcceeeeecc--cccceeEEEEccCCCe-EEEEecCCCCCce
Q 036585 16 LSEEILQSMEV-GIYLVTAS-------DDESIRLYDVTAATCLKTINS--KKYGVDLVCFTSHPTT-VIYSSKNGWDESL 84 (304)
Q Consensus 16 ~~~~~i~~~~~-~~~l~~~~-------~d~~i~vw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~-l~~~~~~~~d~~i 84 (304)
.|...++++|. .++||.+. ..|++.|.++...+-+..... -.+.+..++|+++... +++++. ||++
T Consensus 9 f~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~G---DGSL 85 (311)
T KOG0277|consen 9 FHGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASG---DGSL 85 (311)
T ss_pred cccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEec---CceE
Confidence 46677899987 44444442 368899999875554444432 3468999999997654 445554 9999
Q ss_pred EEEEccC-ceeeeecccccccEEEEEEcC-CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCC
Q 036585 85 RLLSLHD-NKYSRYFKGHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKG 162 (304)
Q Consensus 85 ~vwd~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (304)
++||+.. ..+++.++.|...|.++.|++ ++..+++++.|++|++|+...+..+.++.
T Consensus 86 rl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~--------------------- 144 (311)
T KOG0277|consen 86 RLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN--------------------- 144 (311)
T ss_pred EEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeec---------------------
Confidence 9999754 358899999999999999998 56678888999999999998877776654
Q ss_pred CeEEEEecCCCCCceEEEEec-CCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcC-CCcEEEEecCCC
Q 036585 163 PLDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-EGMFVISGSGDG 240 (304)
Q Consensus 163 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg 240 (304)
+|...|...+|+| ..+.+++++.||++++||++..-....+. .|...+.++.|+. +.+.|++|+.|+
T Consensus 145 --------gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~---ah~~Eil~cdw~ky~~~vl~Tg~vd~ 213 (311)
T KOG0277|consen 145 --------GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE---AHNSEILCCDWSKYNHNVLATGGVDN 213 (311)
T ss_pred --------CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE---eccceeEeecccccCCcEEEecCCCc
Confidence 6788899999999 47889999999999999998755444466 6888999999998 667899999999
Q ss_pred cEEEEecCCC-ceeeeeeccCCCCceEEeCCCC-cEEEEecCc--eEEeccCCc
Q 036585 241 SVHAWSVRSG-KEVASWMSFDTEPPVIKWAPGS-LMFVTGSSE--LSFWIPDLS 290 (304)
Q Consensus 241 ~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~d--~~iw~~~~~ 290 (304)
.|++||+++. .++.++.+|.-.|+.++|||.. ..|++++.| ++||++..+
T Consensus 214 ~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ 267 (311)
T KOG0277|consen 214 LVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ 267 (311)
T ss_pred eEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccc
Confidence 9999999885 4588889999999999999964 689999999 999999743
No 56
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=2.1e-32 Score=225.60 Aligned_cols=224 Identities=14% Similarity=0.243 Sum_probs=178.0
Q ss_pred eeCCCeEEEEecCCcceeeeecccccceeEEEEccC-CCeEEEEecCCCCCceEEEEccCce--------eeeecccccc
Q 036585 33 ASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH-PTTVIYSSKNGWDESLRLLSLHDNK--------YSRYFKGHHD 103 (304)
Q Consensus 33 ~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~d~~i~vwd~~~~~--------~~~~~~~~~~ 103 (304)
|+.++.+++|+......+..+.+|...|.+++|+|+ +..|++++. |+.|++||+.++. ++..+.+|..
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~---DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSE---DLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeC---CCeEEEEECCCCCccccccccceEEeecCCC
Confidence 567889999998888888899999999999999997 789999998 9999999997642 3446778999
Q ss_pred cEEEEEEcCCCCE-EEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEe
Q 036585 104 RVVLLSLCSSKDC-FISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFS 182 (304)
Q Consensus 104 ~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 182 (304)
.|.+++|+|++.. +++++.|++|++||+++++....+. +...|.+++|+
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~------------------------------~~~~V~Slsws 176 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN------------------------------MPKKLSSLKWN 176 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe------------------------------cCCcEEEEEEC
Confidence 9999999998875 5788999999999999876544332 33568999999
Q ss_pred cCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcce-----EEEEcCCCcEEEEecCCC----cEEEEecCC-Cce
Q 036585 183 NDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTL-----EASFSPEGMFVISGSGDG----SVHAWSVRS-GKE 252 (304)
Q Consensus 183 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~-----~~~~s~~~~~l~~~~~dg----~i~v~d~~~-~~~ 252 (304)
|+|.+|++++.|+.|++||+++++.+..+. .|.+.+. ...|++++.+|++++.|+ .|+|||+++ .++
T Consensus 177 pdG~lLat~s~D~~IrIwD~Rsg~~i~tl~---gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~p 253 (568)
T PTZ00420 177 IKGNLLSGTCVGKHMHIIDPRKQEIASSFH---IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSA 253 (568)
T ss_pred CCCCEEEEEecCCEEEEEECCCCcEEEEEe---cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCc
Confidence 999999999999999999999999988887 4555433 234568999999887664 799999985 555
Q ss_pred eeeee--ccCCCCceEEeCCCCcEEEEecCc--eEEeccCCccc
Q 036585 253 VASWM--SFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKL 292 (304)
Q Consensus 253 ~~~~~--~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~ 292 (304)
+..+. .+.+.+......+++.++++|+.| +++|++..+.+
T Consensus 254 l~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~ 297 (568)
T PTZ00420 254 LVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSI 297 (568)
T ss_pred eEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcE
Confidence 55543 222333333345568889999888 99999976543
No 57
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=2.1e-32 Score=224.53 Aligned_cols=237 Identities=14% Similarity=0.205 Sum_probs=184.2
Q ss_pred EeecccCcEEEEeeCCCeEEEEecCCccee-------------eeecccccceeEEEEcc-CCCeEEEEecCCCCCceEE
Q 036585 21 LQSMEVGIYLVTASDDESIRLYDVTAATCL-------------KTINSKKYGVDLVCFTS-HPTTVIYSSKNGWDESLRL 86 (304)
Q Consensus 21 i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~d~~i~v 86 (304)
....+++..+++++.+.....|+...+..+ ..+.+|.+.|.+++|+| ++..|++++. |++|++
T Consensus 26 ~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~---DgtIkI 102 (493)
T PTZ00421 26 STALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASE---DGTIMG 102 (493)
T ss_pred ccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeC---CCEEEE
Confidence 344556566677766666667765433221 24678999999999999 7889999998 999999
Q ss_pred EEccCc-------eeeeecccccccEEEEEEcCCC-CEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEE
Q 036585 87 LSLHDN-------KYSRYFKGHHDRVVLLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFG 158 (304)
Q Consensus 87 wd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (304)
||+.++ +++..+.+|...|.+++|+|++ ++|++++.|++|++||+++++....+
T Consensus 103 Wdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l------------------ 164 (493)
T PTZ00421 103 WGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVI------------------ 164 (493)
T ss_pred EecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEE------------------
Confidence 999764 3466788999999999999975 69999999999999999987654433
Q ss_pred ecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCc-ceEEEEcCCCcEEEEec
Q 036585 159 YEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS-TLEASFSPEGMFVISGS 237 (304)
Q Consensus 159 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~-i~~~~~s~~~~~l~~~~ 237 (304)
..|...|.+++|+|+|.+|++++.|+.|++||+++++.+..+. .|... ...+.|.+++..+++++
T Consensus 165 -----------~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~---~H~~~~~~~~~w~~~~~~ivt~G 230 (493)
T PTZ00421 165 -----------KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE---AHASAKSQRCLWAKRKDLIITLG 230 (493)
T ss_pred -----------cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe---cCCCCcceEEEEcCCCCeEEEEe
Confidence 2577789999999999999999999999999999999888777 45443 44678999887777654
Q ss_pred ----CCCcEEEEecCCCce-eeeeecc-CCCCceEEeCCCCcEEEEecC-c--eEEeccCCccc
Q 036585 238 ----GDGSVHAWSVRSGKE-VASWMSF-DTEPPVIKWAPGSLMFVTGSS-E--LSFWIPDLSKL 292 (304)
Q Consensus 238 ----~dg~i~v~d~~~~~~-~~~~~~~-~~~i~~~~~~~~~~~l~s~~~-d--~~iw~~~~~~~ 292 (304)
.|+.|++||+++... +.....+ ...+....|++++.+|++++. | +++|++...++
T Consensus 231 ~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 231 CSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERL 294 (493)
T ss_pred cCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCce
Confidence 478999999987543 3333323 334556678999999988874 5 99999876554
No 58
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=4.2e-33 Score=201.99 Aligned_cols=245 Identities=19% Similarity=0.253 Sum_probs=208.6
Q ss_pred eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEcc-CceeeeecccccccEEEEEEcCCCCEEEEcccCCeEE
Q 036585 49 CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH-DNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVL 127 (304)
Q Consensus 49 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 127 (304)
++..+.+|++.|+.+.|+|+|..|++++. |..|.+|++. ..+....+++|.+.|..+.|.++++.+++++.|.+++
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~---Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGS---DRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVR 115 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCC---cceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEE
Confidence 45567899999999999999999999999 9999999964 3455677889999999999999999999999999999
Q ss_pred EEeCCcceeeceEEEeccceeEecCCC-----eEEEecCCCeEEEEecC--------CCCCceEEEEecCCcEEEEeeCC
Q 036585 128 LWDQRAEKCQGLLRVQGRPAAAYDDQG-----LVFGYEKGPLDIFSVGG--------DISDANVVKFSNDGRLMLLTTME 194 (304)
Q Consensus 128 iwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~d 194 (304)
.||.++++....++.+....-+..|.. ...+.+++.+++|+++. ...+++++.|..++..+.+|+-|
T Consensus 116 ~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggId 195 (338)
T KOG0265|consen 116 GWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGID 195 (338)
T ss_pred EEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeecccc
Confidence 999999999998887766554444432 33467789999999872 35688999999999999999999
Q ss_pred CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC----ceeeeeeccCC----CCceE
Q 036585 195 GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG----KEVASWMSFDT----EPPVI 266 (304)
Q Consensus 195 g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~----~~~~~~~~~~~----~i~~~ 266 (304)
+.|++||++.+.....+. +|..+|+.+..+|+|.++.+-+.|.++++||++.. +++..+.+|.. ....+
T Consensus 196 n~ikvWd~r~~d~~~~ls---Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~c 272 (338)
T KOG0265|consen 196 NDIKVWDLRKNDGLYTLS---GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKC 272 (338)
T ss_pred CceeeeccccCcceEEee---cccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhccee
Confidence 999999999999999998 89999999999999999999999999999999753 33666665532 34567
Q ss_pred EeCCCCcEEEEecCc--eEEeccCCc-cccccccCC
Q 036585 267 KWAPGSLMFVTGSSE--LSFWIPDLS-KLGAYVGRN 299 (304)
Q Consensus 267 ~~~~~~~~l~s~~~d--~~iw~~~~~-~~~~~~~~~ 299 (304)
+|+|++..+..|+.| +.+|+.... -+..+.||.
T Consensus 273 swsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~ 308 (338)
T KOG0265|consen 273 SWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHY 308 (338)
T ss_pred eccCCCCccccccccceEEEeecccccEEEEcCCcc
Confidence 899999999999999 888888664 456667665
No 59
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-33 Score=220.86 Aligned_cols=237 Identities=16% Similarity=0.228 Sum_probs=208.3
Q ss_pred ecceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecc-cccceeEEEEccCCCeEEEEecCCCCCceEEEEccCce
Q 036585 15 ELSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK 93 (304)
Q Consensus 15 ~~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~ 93 (304)
+.....+.++++|.+|++|..+|.|.|||..+.+.+..+.+ |...|.+++|. +..+.+|+. ++.|..+|++..+
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr---~~~I~~~dvR~~~ 291 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSR---DGKILNHDVRISQ 291 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecC---CCcEEEEEEecch
Confidence 34455688999999999999999999999999999999998 99999999996 777888887 9999999999877
Q ss_pred eeee-cccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCC
Q 036585 94 YSRY-FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGD 172 (304)
Q Consensus 94 ~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (304)
.... +.+|...|..++|++++.++++|+.|+.+.|||.....+...+ ..|
T Consensus 292 ~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~-----------------------------~~H 342 (484)
T KOG0305|consen 292 HVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTF-----------------------------TEH 342 (484)
T ss_pred hhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEE-----------------------------ecc
Confidence 5554 8899999999999999999999999999999999555544333 368
Q ss_pred CCCceEEEEecC-CcEEEEe--eCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEe--cCCCcEEEEec
Q 036585 173 ISDANVVKFSND-GRLMLLT--TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG--SGDGSVHAWSV 247 (304)
Q Consensus 173 ~~~v~~~~~~~~-~~~l~~~--~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~--~~dg~i~v~d~ 247 (304)
...|.+++|+|- ..+||+| +.|+.|++||..+++.+.... ....|..+.|++..+-|+++ ..++.|.||+.
T Consensus 343 ~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd----tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ 418 (484)
T KOG0305|consen 343 TAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD----TGSQVCSLIWSKKYKELLSTHGYSENQITLWKY 418 (484)
T ss_pred ceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc----cCCceeeEEEcCCCCEEEEecCCCCCcEEEEec
Confidence 899999999994 5677775 469999999999999988886 77899999999988777665 46778999999
Q ss_pred CCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCC
Q 036585 248 RSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDL 289 (304)
Q Consensus 248 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~ 289 (304)
.+.+++..+.+|...|..++++|||..+++|+.| +++|.+-.
T Consensus 419 ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 419 PSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred cccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 9999999999999999999999999999999999 99998743
No 60
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.1e-33 Score=212.60 Aligned_cols=227 Identities=20% Similarity=0.262 Sum_probs=195.0
Q ss_pred eeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeec
Q 036585 19 EILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYF 98 (304)
Q Consensus 19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~ 98 (304)
-.+.+-.||++||.|...|.|+|+|.++...++.+..|+.++..+.|+|+++.+++.+++ |+.+++||+.+......+
T Consensus 72 ~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sD--d~v~k~~d~s~a~v~~~l 149 (487)
T KOG0310|consen 72 YSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSD--DKVVKYWDLSTAYVQAEL 149 (487)
T ss_pred eEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCC--CceEEEEEcCCcEEEEEe
Confidence 346677789999999999999999988777889999999999999999977665555443 899999999998876688
Q ss_pred ccccccEEEEEEcC-CCCEEEEcccCCeEEEEeCCcce-eeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCc
Q 036585 99 KGHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEK-CQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDA 176 (304)
Q Consensus 99 ~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 176 (304)
.+|++.|.|.+|+| ++..+++|+.||+|++||++... .+..+ .|..+|
T Consensus 150 ~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el------------------------------nhg~pV 199 (487)
T KOG0310|consen 150 SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL------------------------------NHGCPV 199 (487)
T ss_pred cCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe------------------------------cCCCce
Confidence 99999999999999 45689999999999999999873 33333 377899
Q ss_pred eEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeee
Q 036585 177 NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASW 256 (304)
Q Consensus 177 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 256 (304)
..+.+-|.|..+++++.+ .+++||+.+|........ .|...|+|+++..++..|++|+-|+.|++||+.+.+.+..+
T Consensus 200 e~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~--~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~ 276 (487)
T KOG0310|consen 200 ESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMF--NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW 276 (487)
T ss_pred eeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhh--cccceEEEEEeecCCceEeecccccceEEEEccceEEEEee
Confidence 999999999988887754 899999986654443331 48899999999999999999999999999999888988888
Q ss_pred eccCCCCceEEeCCCCcEEEEecCc
Q 036585 257 MSFDTEPPVIKWAPGSLMFVTGSSE 281 (304)
Q Consensus 257 ~~~~~~i~~~~~~~~~~~l~s~~~d 281 (304)
. ..++|.+++.+|+++.++.|..+
T Consensus 277 ~-~~~pvLsiavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 277 K-YPGPVLSIAVSPDDQTVVIGMSN 300 (487)
T ss_pred e-cccceeeEEecCCCceEEEeccc
Confidence 5 67899999999999999999999
No 61
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=4.9e-33 Score=211.01 Aligned_cols=231 Identities=21% Similarity=0.257 Sum_probs=207.4
Q ss_pred ccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccccccc
Q 036585 25 EVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDR 104 (304)
Q Consensus 25 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 104 (304)
+..+.+++|+.|..+.++|...++.+..+.||...|+.+.++|+...+++++. |..|+||.............|..+
T Consensus 229 ~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSa---d~~i~vws~~~~s~~~~~~~h~~~ 305 (506)
T KOG0289|consen 229 PSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASA---DEIIRVWSVPLSSEPTSSRPHEEP 305 (506)
T ss_pred CCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCC---cceEEeeccccccCcccccccccc
Confidence 33588999999999999999999999999999999999999999999999998 999999999888888888899999
Q ss_pred EEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecC
Q 036585 105 VVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSND 184 (304)
Q Consensus 105 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 184 (304)
|+.+..+|.|.||++++.|++..+.|++++......... ...-.+++.+|+||
T Consensus 306 V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~---------------------------~s~v~~ts~~fHpD 358 (506)
T KOG0289|consen 306 VTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE---------------------------TSDVEYTSAAFHPD 358 (506)
T ss_pred ceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec---------------------------cccceeEEeeEcCC
Confidence 999999999999999999999999999999876655422 12235789999999
Q ss_pred CcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeecc-CCCC
Q 036585 185 GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSF-DTEP 263 (304)
Q Consensus 185 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~i 263 (304)
|..|.+|..||.+++||+.++.....|. +|.++|..++|+.+|-||++++.|+.|++||++..+...++... ..++
T Consensus 359 gLifgtgt~d~~vkiwdlks~~~~a~Fp---ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v 435 (506)
T KOG0289|consen 359 GLIFGTGTPDGVVKIWDLKSQTNVAKFP---GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEV 435 (506)
T ss_pred ceEEeccCCCceEEEEEcCCccccccCC---CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccc
Confidence 9999999999999999999998777777 79999999999999999999999999999999988877777433 2379
Q ss_pred ceEEeCCCCcEEEEecCceEEeccC
Q 036585 264 PVIKWAPGSLMFVTGSSELSFWIPD 288 (304)
Q Consensus 264 ~~~~~~~~~~~l~s~~~d~~iw~~~ 288 (304)
.++.|.+.|.+|+.++.+++||.+.
T Consensus 436 ~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 436 NSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred eeEEEcCCCCeEEeecceeEEEEEe
Confidence 9999999999999999998877665
No 62
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=8.7e-35 Score=223.12 Aligned_cols=220 Identities=22% Similarity=0.386 Sum_probs=190.1
Q ss_pred cceeeeecccccceeEEEEcc-CCCeEEEEecCCCCCceEEEEccC-ceeeeecccccccEEEEEEcCCCCEEEEcccCC
Q 036585 47 ATCLKTINSKKYGVDLVCFTS-HPTTVIYSSKNGWDESLRLLSLHD-NKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDR 124 (304)
Q Consensus 47 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 124 (304)
.+.+.++.+|+..|.++.|.| .+.+|++++. |+.|+||++.. +++++++.+|..+|..++|+++|..|++++.|+
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gm---D~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~ 280 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGM---DGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDR 280 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCC---CceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecce
Confidence 356788999999999999999 7888888888 99999999987 889999999999999999999999999999999
Q ss_pred eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCC-cEEEEeeCCCeEEEEEcC
Q 036585 125 TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSF 203 (304)
Q Consensus 125 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~ 203 (304)
.+++||++++++...+... ..++++.|+|++ +.|++|+.|+.|+.||++
T Consensus 281 ~lKlwDtETG~~~~~f~~~------------------------------~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiR 330 (503)
T KOG0282|consen 281 FLKLWDTETGQVLSRFHLD------------------------------KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIR 330 (503)
T ss_pred eeeeeccccceEEEEEecC------------------------------CCceeeecCCCCCcEEEEecCCCcEEEEecc
Confidence 9999999999999888643 467899999998 889999999999999999
Q ss_pred CCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCcee------------------------------
Q 036585 204 RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEV------------------------------ 253 (304)
Q Consensus 204 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~------------------------------ 253 (304)
+++.+..+. .|-+.|..+.|-++|+++++.+.|++++||+.+..-++
T Consensus 331 s~kvvqeYd---~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN 407 (503)
T KOG0282|consen 331 SGKVVQEYD---RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDN 407 (503)
T ss_pred chHHHHHHH---hhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCc
Confidence 999998887 58899999999999999999999999999997654211
Q ss_pred ----------------eeeeccC--CCCceEEeCCCCcEEEEecCc--eEEeccCCccc-cccccCCCCC
Q 036585 254 ----------------ASWMSFD--TEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKL-GAYVGRNRGC 302 (304)
Q Consensus 254 ----------------~~~~~~~--~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~-~~~~~~~~g~ 302 (304)
+.+.+|. +.-..+.|||||++|++|+.| +.+|+|+..++ ..+..|+.-|
T Consensus 408 ~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~c 477 (503)
T KOG0282|consen 408 YIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPC 477 (503)
T ss_pred eEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcce
Confidence 1123442 334568899999999999999 88999977554 6677776555
No 63
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-33 Score=209.05 Aligned_cols=245 Identities=17% Similarity=0.291 Sum_probs=206.0
Q ss_pred ceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEE
Q 036585 48 TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVL 127 (304)
Q Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 127 (304)
.+.+.+.+|..+|..+-|+|+-..+++++. |++|++||..+++....+++|++.+..+.|+..|+++++++.|-.++
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~---d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~ 175 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASE---DATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAK 175 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecC---CceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchh
Confidence 455667789999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred EEeCCc-ceeeceEEEec--cceeEecCCC--eEEEecCCCeEEEEe---------cCCCCCceEEEEecCCcEEEEeeC
Q 036585 128 LWDQRA-EKCQGLLRVQG--RPAAAYDDQG--LVFGYEKGPLDIFSV---------GGDISDANVVKFSNDGRLMLLTTM 193 (304)
Q Consensus 128 iwd~~~-~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~l~~~~~ 193 (304)
+||..+ .++.+.+..+. ...+.+-|.+ .+-...+..++.|++ .+|..-|..++.+.||.++++++.
T Consensus 176 LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~ 255 (406)
T KOG0295|consen 176 LWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN 255 (406)
T ss_pred heeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC
Confidence 999886 33333332222 2233343333 333555666776654 467888999999999999999999
Q ss_pred CCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCC---------------CcEEEEecCCCcEEEEecCCCceeeeeec
Q 036585 194 EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE---------------GMFVISGSGDGSVHAWSVRSGKEVASWMS 258 (304)
Q Consensus 194 dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~---------------~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 258 (304)
|.++++|-+.++++...+. .|+.++.+++|.|. ++++.+++.|++|++||+.++.++.++.+
T Consensus 256 dqtl~vW~~~t~~~k~~lR---~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~g 332 (406)
T KOG0295|consen 256 DQTLRVWVVATKQCKAELR---EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVG 332 (406)
T ss_pred CceEEEEEeccchhhhhhh---ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEec
Confidence 9999999999998888887 68899999999773 25899999999999999999999999999
Q ss_pred cCCCCceEEeCCCCcEEEEecCc--eEEeccCCcc-ccccccC
Q 036585 259 FDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSK-LGAYVGR 298 (304)
Q Consensus 259 ~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~-~~~~~~~ 298 (304)
|...|..++|+|.|+||+++.+| +++|++...+ .+.+..|
T Consensus 333 hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah 375 (406)
T KOG0295|consen 333 HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH 375 (406)
T ss_pred ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC
Confidence 99999999999999999999999 9999996544 4444443
No 64
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-33 Score=224.55 Aligned_cols=240 Identities=19% Similarity=0.326 Sum_probs=210.1
Q ss_pred ccCcEEEEeeCCCeEEEEecCCcc------eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCc--eeee
Q 036585 25 EVGIYLVTASDDESIRLYDVTAAT------CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN--KYSR 96 (304)
Q Consensus 25 ~~~~~l~~~~~d~~i~vw~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~--~~~~ 96 (304)
+.++||+|||.||.|++|+..... .+..++.|...|+.++...+++.|++++. |-+|++|+...+ -++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~Ss---DtTVK~W~~~~~~~~c~s 111 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASS---DTTVKVWNAHKDNTFCMS 111 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecC---CceEEEeecccCcchhHh
Confidence 457899999999999999986432 36778889999999999999999999999 999999999877 5788
Q ss_pred ecccccccEEEEEE-cCCCCEEEEcccCCeEEEEeCCccee--eceEEEeccceeEecCCCeEEEecCCCeEEEEec-CC
Q 036585 97 YFKGHHDRVVLLSL-CSSKDCFISGSLDRTVLLWDQRAEKC--QGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVG-GD 172 (304)
Q Consensus 97 ~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 172 (304)
++..|.+.|.|+++ .++..++++|+.|+.|.+||+.++.. +..+..- ..-++. ++
T Consensus 112 tir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~---------------------t~~sl~sG~ 170 (735)
T KOG0308|consen 112 TIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNV---------------------TVNSLGSGP 170 (735)
T ss_pred hhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccc---------------------ccccCCCCC
Confidence 89999999999999 77888999999999999999998744 2222111 011111 57
Q ss_pred CCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCce
Q 036585 173 ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKE 252 (304)
Q Consensus 173 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~ 252 (304)
...|.+++.++.|..++.|+.++.+++||.++.+.+..+. +|...|..+..++||+.+++++.||+|++||+...++
T Consensus 171 k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr---GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrC 247 (735)
T KOG0308|consen 171 KDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR---GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRC 247 (735)
T ss_pred ccceeeeecCCcceEEEecCcccceEEeccccccceeeee---ccccceEEEEEcCCCCeEeecCCCceEEeeeccccce
Confidence 7889999999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred eeeeeccCCCCceEEeCCCCcEEEEecCceEEeccCCcc
Q 036585 253 VASWMSFDTEPPVIKWAPGSLMFVTGSSELSFWIPDLSK 291 (304)
Q Consensus 253 ~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~iw~~~~~~ 291 (304)
+.++..|...|+++..+|+-.++++|+.|..|+..++..
T Consensus 248 l~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 248 LATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred eeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence 999999999999999999999999999997777666554
No 65
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.4e-32 Score=194.07 Aligned_cols=209 Identities=14% Similarity=0.213 Sum_probs=178.3
Q ss_pred ceeeeecccccceeEEEEccC-CCeEEEEecCCCCCceEEEEccCc---eeeeec-ccccccEEEEEEcCCCCEEEEccc
Q 036585 48 TCLKTINSKKYGVDLVCFTSH-PTTVIYSSKNGWDESLRLLSLHDN---KYSRYF-KGHHDRVVLLSLCSSKDCFISGSL 122 (304)
Q Consensus 48 ~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~d~~i~vwd~~~~---~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~ 122 (304)
..++.+++|++.+..++|+|- |..|++++. |+.|++|+...+ .+...+ .+|+..|.+++|+|.|++|++++.
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~---Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF 81 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGT---DKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF 81 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecC---CceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeec
Confidence 356778899999999999998 888999998 999999999853 233333 369999999999999999999999
Q ss_pred CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEc
Q 036585 123 DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDS 202 (304)
Q Consensus 123 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~ 202 (304)
|.++.||.-..+.... +-.+++|...|.+++|+++|++||+++.|..|.+|..
T Consensus 82 D~t~~Iw~k~~~efec---------------------------v~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ 134 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFEC---------------------------VATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEI 134 (312)
T ss_pred cceEEEeecCCCceeE---------------------------EeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEe
Confidence 9999999765433221 1234589999999999999999999999999999999
Q ss_pred CCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecC---CCceeeeeeccCCCCceEEeCCCCcEEEEec
Q 036585 203 FRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVR---SGKEVASWMSFDTEPPVIKWAPGSLMFVTGS 279 (304)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 279 (304)
..+...........|...|..+.|+|...+|++++.|++|++|+-. +-.+++++.+|...|.+++|+|.|..|++++
T Consensus 135 deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s 214 (312)
T KOG0645|consen 135 DEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCS 214 (312)
T ss_pred cCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEec
Confidence 8665544444444799999999999999999999999999999876 3467899999999999999999999999999
Q ss_pred Cc--eEEec
Q 036585 280 SE--LSFWI 286 (304)
Q Consensus 280 ~d--~~iw~ 286 (304)
.| ++||.
T Consensus 215 dD~tv~Iw~ 223 (312)
T KOG0645|consen 215 DDGTVSIWR 223 (312)
T ss_pred CCcceEeee
Confidence 99 99997
No 66
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-32 Score=201.36 Aligned_cols=240 Identities=18% Similarity=0.288 Sum_probs=208.3
Q ss_pred eeeecceeeEeecc-cCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCC--eEEEEecCCCCCceEEEE
Q 036585 12 VSLELSEEILQSME-VGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT--TVIYSSKNGWDESLRLLS 88 (304)
Q Consensus 12 ~~~~~~~~~i~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~~~~d~~i~vwd 88 (304)
...+.|...+...+ +|.++|+||.|-+|+|||+.+...+..+..|.+.|+++.|.+.-. .|++|+. ||.|.+|+
T Consensus 37 F~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sd---DG~i~iw~ 113 (362)
T KOG0294|consen 37 FAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSD---DGHIIIWR 113 (362)
T ss_pred ccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecC---CCcEEEEE
Confidence 34456777777665 589999999999999999999999999999999999999999876 8999998 99999999
Q ss_pred ccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEE
Q 036585 89 LHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFS 168 (304)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (304)
...-+.+.++++|.+.|+.++.+|.+++.++.+.|+.++.||+-+++.....+...
T Consensus 114 ~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~------------------------ 169 (362)
T KOG0294|consen 114 VGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN------------------------ 169 (362)
T ss_pred cCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC------------------------
Confidence 99999999999999999999999999999999999999999999888766655332
Q ss_pred ecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecC
Q 036585 169 VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVR 248 (304)
Q Consensus 169 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~ 248 (304)
..+.+.|+|.|.+|+++..+ .|-+|.+.+......+. ....+.++.|- ++.+|++|..|+.|.+||..
T Consensus 170 ------~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~----~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~d 237 (362)
T KOG0294|consen 170 ------KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIE----NPKRILCATFL-DGSELLVGGDNEWISLKDTD 237 (362)
T ss_pred ------cceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhh----ccccceeeeec-CCceEEEecCCceEEEeccC
Confidence 23449999999999988876 68899998877776665 33456666664 66789999999999999999
Q ss_pred CCceeeeeeccCCCCceEEe--CCCCcEEEEecCc--eEEeccCCc
Q 036585 249 SGKEVASWMSFDTEPPVIKW--APGSLMFVTGSSE--LSFWIPDLS 290 (304)
Q Consensus 249 ~~~~~~~~~~~~~~i~~~~~--~~~~~~l~s~~~d--~~iw~~~~~ 290 (304)
+..+...+.+|..+|-++.+ .|++.+|+|+|.| |++|+.+.+
T Consensus 238 s~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 238 SDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred CCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 99999999999999999984 5678999999999 999999877
No 67
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=1.1e-31 Score=220.27 Aligned_cols=225 Identities=15% Similarity=0.149 Sum_probs=179.5
Q ss_pred eeeccee---eEeecc-cCcEEEEeeCCCeEEEEecCCc-------ceeeeecccccceeEEEEccCC-CeEEEEecCCC
Q 036585 13 SLELSEE---ILQSME-VGIYLVTASDDESIRLYDVTAA-------TCLKTINSKKYGVDLVCFTSHP-TTVIYSSKNGW 80 (304)
Q Consensus 13 ~~~~~~~---~i~~~~-~~~~l~~~~~d~~i~vw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~ 80 (304)
.+.+|.+ .+.|+| ++++|++++.|++|++||+.++ +++..+.+|...|.+++|+|++ ..|++++.
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~--- 146 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA--- 146 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC---
Confidence 3556654 366788 7889999999999999999764 3567889999999999999986 68888888
Q ss_pred CCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEec
Q 036585 81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYE 160 (304)
Q Consensus 81 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (304)
|+.|+|||+++++.+..+.+|...|.+++|+|++.+|++++.|+.|++||+++++....+.
T Consensus 147 DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~------------------- 207 (493)
T PTZ00421 147 DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE------------------- 207 (493)
T ss_pred CCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe-------------------
Confidence 9999999999999999999999999999999999999999999999999999887655443
Q ss_pred CCCeEEEEecCCCC-CceEEEEecCCcEEEEee----CCCeEEEEEcCCCcee-EEEEeCCCCCCcceEEEEcCCCcEEE
Q 036585 161 KGPLDIFSVGGDIS-DANVVKFSNDGRLMLLTT----MEGHIHVLDSFRGTLL-STYNVKPVSRNSTLEASFSPEGMFVI 234 (304)
Q Consensus 161 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~----~dg~i~~~d~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~ 234 (304)
+|.. ....+.|.+++..+++++ .|+.|++||+++.... ..... .....+....|++++++|+
T Consensus 208 ----------~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~--d~~~~~~~~~~d~d~~~L~ 275 (493)
T PTZ00421 208 ----------AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDL--DQSSALFIPFFDEDTNLLY 275 (493)
T ss_pred ----------cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEecc--CCCCceEEEEEcCCCCEEE
Confidence 2332 234577888877777654 4789999999875533 22221 1334555678999999999
Q ss_pred Eec-CCCcEEEEecCCCceeeeeec-cCCCCceEEeCCC
Q 036585 235 SGS-GDGSVHAWSVRSGKEVASWMS-FDTEPPVIKWAPG 271 (304)
Q Consensus 235 ~~~-~dg~i~v~d~~~~~~~~~~~~-~~~~i~~~~~~~~ 271 (304)
+++ .|+.|++||+.+++++..... +..++..++|.|.
T Consensus 276 lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 276 IGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred EEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 887 599999999999887665533 4567889999884
No 68
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.5e-32 Score=219.34 Aligned_cols=281 Identities=19% Similarity=0.269 Sum_probs=224.6
Q ss_pred eEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc
Q 036585 20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK 99 (304)
Q Consensus 20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~ 99 (304)
.+..+++..+||.|-.||.|++|+..+.....++.+|...|+++.|...|..|++|+. |+.|.+||+-...-...+.
T Consensus 70 ~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGsk---Dt~IIvwDlV~E~Gl~rL~ 146 (888)
T KOG0306|consen 70 CLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSK---DTDIIVWDLVGEEGLFRLR 146 (888)
T ss_pred EeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCC---CccEEEEEeccceeeEEee
Confidence 3455567788999999999999999999999999999999999999999999999999 9999999999888888999
Q ss_pred cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccc---------------------------------
Q 036585 100 GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--------------------------------- 146 (304)
Q Consensus 100 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--------------------------------- 146 (304)
+|.+.|+.+-|..+.+++++.+.|+.|++||+++..+..+.-.+...
T Consensus 147 GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~ 226 (888)
T KOG0306|consen 147 GHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKE 226 (888)
T ss_pred cchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeeccccccc
Confidence 99999999999988889999999999999999887654431100000
Q ss_pred ----------------------eeEecCCCeEE-----------------------------------------------
Q 036585 147 ----------------------AAAYDDQGLVF----------------------------------------------- 157 (304)
Q Consensus 147 ----------------------~~~~~~~~~~~----------------------------------------------- 157 (304)
....+.+..++
T Consensus 227 ~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~s 306 (888)
T KOG0306|consen 227 TNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKS 306 (888)
T ss_pred ccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhh
Confidence 00001111100
Q ss_pred --------------------------------------------------------------------------------
Q 036585 158 -------------------------------------------------------------------------------- 157 (304)
Q Consensus 158 -------------------------------------------------------------------------------- 157 (304)
T Consensus 307 l~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~ 386 (888)
T KOG0306|consen 307 LSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSI 386 (888)
T ss_pred HHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCce
Confidence
Q ss_pred -------------------------------------------EecCCCeEEEEec---------CCCCCceEEEEecCC
Q 036585 158 -------------------------------------------GYEKGPLDIFSVG---------GDISDANVVKFSNDG 185 (304)
Q Consensus 158 -------------------------------------------~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~ 185 (304)
+..+|.+.+|++. .|.+.+..++.+||+
T Consensus 387 ~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~ 466 (888)
T KOG0306|consen 387 LLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDN 466 (888)
T ss_pred eeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCC
Confidence 3344444444432 378889999999999
Q ss_pred cEEEEeeCCCeEEEEEcCC-----CceeEEEEeC----CCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeee
Q 036585 186 RLMLLTTMEGHIHVLDSFR-----GTLLSTYNVK----PVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASW 256 (304)
Q Consensus 186 ~~l~~~~~dg~i~~~d~~~-----~~~~~~~~~~----~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 256 (304)
+.+++|+.|.+|++||..- +...+.+... -.-...|.++.+||||++|+++=-|++|+||-+.+.+..-.+
T Consensus 467 ~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsL 546 (888)
T KOG0306|consen 467 KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSL 546 (888)
T ss_pred CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeee
Confidence 9999999999999999641 1111111110 014578999999999999999999999999999999999999
Q ss_pred eccCCCCceEEeCCCCcEEEEecCc--eEEeccCCccc-cccccCCCCCC
Q 036585 257 MSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKL-GAYVGRNRGCM 303 (304)
Q Consensus 257 ~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~-~~~~~~~~g~~ 303 (304)
.||.-||.|+..+||++.++|||.| ++||-++...- +.+.+|.+.+|
T Consensus 547 YGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm 596 (888)
T KOG0306|consen 547 YGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVM 596 (888)
T ss_pred cccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCcee
Confidence 9999999999999999999999999 99999987665 45666776654
No 69
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2.2e-32 Score=204.12 Aligned_cols=243 Identities=22% Similarity=0.296 Sum_probs=199.4
Q ss_pred cceeeeecceeeEee----ccc--CcEEEEeeCCCeEEEEecCCcce----eeeecccccceeEEEEccCCCeEEEEecC
Q 036585 9 EDKVSLELSEEILQS----MEV--GIYLVTASDDESIRLYDVTAATC----LKTINSKKYGVDLVCFTSHPTTVIYSSKN 78 (304)
Q Consensus 9 ~~~~~~~~~~~~i~~----~~~--~~~l~~~~~d~~i~vw~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 78 (304)
+....+.+|.+.+.. .++ ...+++++.|.++++|..+.++. +..-++|...|.+++..+++..+++++.
T Consensus 135 k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~- 213 (423)
T KOG0313|consen 135 KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSW- 213 (423)
T ss_pred ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecc-
Confidence 345566777766552 222 34799999999999999886643 2334599999999999999999999998
Q ss_pred CCCCceEEEEccC-------------------------ceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCc
Q 036585 79 GWDESLRLLSLHD-------------------------NKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRA 133 (304)
Q Consensus 79 ~~d~~i~vwd~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 133 (304)
|..|++|+.++ +.++.++.+|+++|.++.|++ ...+++++.|.+|+.||+++
T Consensus 214 --D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDlet 290 (423)
T KOG0313|consen 214 --DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLET 290 (423)
T ss_pred --cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeec
Confidence 99999999321 124556789999999999998 66899999999999999999
Q ss_pred ceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEe
Q 036585 134 EKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV 213 (304)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 213 (304)
+.....+.. ...++++.++|..++|++|+.|..|++||.+++.-......
T Consensus 291 g~~~~~~~~------------------------------~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s 340 (423)
T KOG0313|consen 291 GGLKSTLTT------------------------------NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQS 340 (423)
T ss_pred ccceeeeec------------------------------CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEe
Confidence 988776652 35678999999999999999999999999988754333333
Q ss_pred CCCCCCcceEEEEcCCC-cEEEEecCCCcEEEEecCCCc-eeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEec
Q 036585 214 KPVSRNSTLEASFSPEG-MFVISGSGDGSVHAWSVRSGK-EVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWI 286 (304)
Q Consensus 214 ~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~ 286 (304)
..+|.+.|.++.|+|.. ..|++|+.|+++++||+++.+ ++..+.+|...|.++.|+ ++..+++|+.| ++|+.
T Consensus 341 ~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 341 LIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFK 416 (423)
T ss_pred eecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEec
Confidence 33799999999999954 568899999999999999987 899999999999999997 56689999999 66654
No 70
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.6e-31 Score=209.53 Aligned_cols=244 Identities=22% Similarity=0.420 Sum_probs=205.4
Q ss_pred eeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEE
Q 036585 50 LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLW 129 (304)
Q Consensus 50 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 129 (304)
+.++.+|..+|.+++|+|+++.+++++. |+.+++|++.+++....+..|...+..+.|+|+++++++++.+|.+++|
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~---~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 78 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSG---DGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLW 78 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeec---CcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEE
Confidence 3467789999999999999999999998 9999999999988888888899999999999999999999999999999
Q ss_pred eCCcceeeceEEEec--cceeEecCCC-eEEEec-CCCeEEEEec---------CCCCCceEEEEecCCcEEEEeeCCCe
Q 036585 130 DQRAEKCQGLLRVQG--RPAAAYDDQG-LVFGYE-KGPLDIFSVG---------GDISDANVVKFSNDGRLMLLTTMEGH 196 (304)
Q Consensus 130 d~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~-~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~dg~ 196 (304)
|+++++....+..+. ...+.+.+++ .++... ++.+.+|++. .|...+.+++|+|++.++++++.+|.
T Consensus 79 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 158 (289)
T cd00200 79 DLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGT 158 (289)
T ss_pred EcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCc
Confidence 999876666655433 3345666654 333333 7778888765 36778999999999998888888999
Q ss_pred EEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEE
Q 036585 197 IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFV 276 (304)
Q Consensus 197 i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 276 (304)
|++||+++++....+. .+...+.+++|+|+++.+++++.|+.|++||+++++.+..+..|...+.+++|+|++.+++
T Consensus 159 i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 235 (289)
T cd00200 159 IKLWDLRTGKCVATLT---GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLA 235 (289)
T ss_pred EEEEEccccccceeEe---cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEE
Confidence 9999999888888887 5777999999999999999999999999999999998888888999999999999999999
Q ss_pred EecCc--eEEeccCC-ccccccccCC
Q 036585 277 TGSSE--LSFWIPDL-SKLGAYVGRN 299 (304)
Q Consensus 277 s~~~d--~~iw~~~~-~~~~~~~~~~ 299 (304)
+++.+ +++|+... ..+..+..|.
T Consensus 236 ~~~~~~~i~i~~~~~~~~~~~~~~~~ 261 (289)
T cd00200 236 SGSEDGTIRVWDLRTGECVQTLSGHT 261 (289)
T ss_pred EEcCCCcEEEEEcCCceeEEEccccC
Confidence 88855 99999874 3344444444
No 71
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.3e-31 Score=194.89 Aligned_cols=259 Identities=18% Similarity=0.264 Sum_probs=210.6
Q ss_pred ceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee
Q 036585 17 SEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR 96 (304)
Q Consensus 17 ~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~ 96 (304)
....+.+++.+..|+.+++||++++|++....+...++ |..++.+.+|.+ ...+++|+. ||.|+++|+++++...
T Consensus 15 ~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~---dg~vr~~Dln~~~~~~ 89 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGL---DGQVRRYDLNTGNEDQ 89 (323)
T ss_pred ceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEecc---CceEEEEEecCCccee
Confidence 34457888888999999999999999999876555554 778999999986 567888887 9999999999987554
Q ss_pred ecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecc-ceeEecCCCeEEEecCCCeEEEEecCC---
Q 036585 97 YFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVFGYEKGPLDIFSVGGD--- 172 (304)
Q Consensus 97 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 172 (304)
+..|..+|.|+.+++....+++|+.|++|++||.+.......+..... ..+....+.++++..+..+.+|++...
T Consensus 90 -igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~ 168 (323)
T KOG1036|consen 90 -IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEP 168 (323)
T ss_pred -eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccch
Confidence 455999999999999888999999999999999998655555544332 245556677888899999999998753
Q ss_pred --------CCCceEEEEecCCcEEEEeeCCCeEEEEEcCCC----ceeEEEEeCCC------CCCcceEEEEcCCCcEEE
Q 036585 173 --------ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG----TLLSTYNVKPV------SRNSTLEASFSPEGMFVI 234 (304)
Q Consensus 173 --------~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~----~~~~~~~~~~~------~~~~i~~~~~s~~~~~l~ 234 (304)
...++++++-|++.-+++++-||.|.+=.+... +....|+.+.. .-.+|++++|+|-...||
T Consensus 169 ~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfa 248 (323)
T KOG1036|consen 169 FQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFA 248 (323)
T ss_pred hhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEE
Confidence 245789999999888999999999888665544 33344443221 123799999999989999
Q ss_pred EecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc
Q 036585 235 SGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE 281 (304)
Q Consensus 235 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 281 (304)
||+.||.|.+||+.+.+.+..+......|.+++|+.+|..||.++.-
T Consensus 249 TgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy 295 (323)
T KOG1036|consen 249 TGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSY 295 (323)
T ss_pred ecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEech
Confidence 99999999999999999999998788889999999999999998753
No 72
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-31 Score=188.63 Aligned_cols=213 Identities=17% Similarity=0.326 Sum_probs=187.8
Q ss_pred eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEE
Q 036585 49 CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLL 128 (304)
Q Consensus 49 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 128 (304)
....+..+.++|..+.|+-+|++.++++. |.+|++|+...+.+++++.+|...|..++.+.|+..|++|+.|..+.+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGs---drtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~v 85 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGS---DRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQV 85 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCC---CceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEE
Confidence 34567889999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred EeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCC--c
Q 036585 129 WDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG--T 206 (304)
Q Consensus 129 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~--~ 206 (304)
||+.+++..+.+. +|...|+.++|+.+...+++|+.|.++++||.++. +
T Consensus 86 wDV~TGkv~Rr~r-----------------------------gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~e 136 (307)
T KOG0316|consen 86 WDVNTGKVDRRFR-----------------------------GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFE 136 (307)
T ss_pred EEcccCeeeeecc-----------------------------cccceeeEEEecCcceEEEeccccceeEEEEcccCCCC
Confidence 9999999988776 78889999999999999999999999999999764 4
Q ss_pred eeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEE
Q 036585 207 LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSF 284 (304)
Q Consensus 207 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~i 284 (304)
+++.+. .....|.++.. .+..+++|+.||+++.||++.|+....+.+ .||++++|++|++....++-| +++
T Consensus 137 PiQild---ea~D~V~Si~v--~~heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrL 209 (307)
T KOG0316|consen 137 PIQILD---EAKDGVSSIDV--AEHEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRL 209 (307)
T ss_pred ccchhh---hhcCceeEEEe--cccEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeee
Confidence 555555 45677887776 456899999999999999999988766654 489999999999999999988 888
Q ss_pred eccCCcc-ccccccCCC
Q 036585 285 WIPDLSK-LGAYVGRNR 300 (304)
Q Consensus 285 w~~~~~~-~~~~~~~~~ 300 (304)
.+-+..+ ++.|+||+.
T Consensus 210 lDk~tGklL~sYkGhkn 226 (307)
T KOG0316|consen 210 LDKETGKLLKSYKGHKN 226 (307)
T ss_pred cccchhHHHHHhccccc
Confidence 8876654 578888764
No 73
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=2.2e-31 Score=218.85 Aligned_cols=235 Identities=19% Similarity=0.329 Sum_probs=202.7
Q ss_pred eecceeeEeecc---cCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEcc
Q 036585 14 LELSEEILQSME---VGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH 90 (304)
Q Consensus 14 ~~~~~~~i~~~~---~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~ 90 (304)
+.+|.+.+.... -+++|++|+.|.++++||..++++...+.+|...+.++.. ....+++|+. |.+|++|+++
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~~sgs~---D~tVkVW~v~ 319 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLLVSGSR---DNTVKVWDVT 319 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc--cCceEeeccC---CceEEEEecc
Confidence 677777655433 3789999999999999999999999999999999998887 5667777777 9999999999
Q ss_pred CceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEec
Q 036585 91 DNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVG 170 (304)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (304)
+++.+..+.+|.++|.++..+ +.++++|+.|++|++||+.+++++..+.
T Consensus 320 n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~----------------------------- 368 (537)
T KOG0274|consen 320 NGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLS----------------------------- 368 (537)
T ss_pred CcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeec-----------------------------
Confidence 999999999999999999997 7799999999999999999888877765
Q ss_pred CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCC-ceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCC
Q 036585 171 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG-TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRS 249 (304)
Q Consensus 171 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~ 249 (304)
+|...|.++.+.+. ..+++|+.|++|++||+++. +++.++. .|..-+..+.+ .+++|++++.|+.|++||..+
T Consensus 369 gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~---~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~ 442 (537)
T KOG0274|consen 369 GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQ---GHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEE 442 (537)
T ss_pred CCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhc---CCccccccccc--ccceeEeccccccEEEeeccc
Confidence 78899999988665 88999999999999999999 8888888 57676655544 678999999999999999999
Q ss_pred Cceeeeeec-cCCCCceEEeCCCCcEEEEecCc--eEEeccCCccc
Q 036585 250 GKEVASWMS-FDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKL 292 (304)
Q Consensus 250 ~~~~~~~~~-~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~ 292 (304)
+++++.+.+ |...|..+++. ...+++++.| +++|++...++
T Consensus 443 ~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 443 GECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred CceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCch
Confidence 999999988 67888888876 3455566666 99998876554
No 74
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=4.2e-31 Score=217.25 Aligned_cols=229 Identities=22% Similarity=0.365 Sum_probs=205.9
Q ss_pred CcEEEEeeCCCeEEEEecCCcceeee-ecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccE
Q 036585 27 GIYLVTASDDESIRLYDVTAATCLKT-INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRV 105 (304)
Q Consensus 27 ~~~l~~~~~d~~i~vw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v 105 (304)
.+++++++.|++|++||..++..+.. +.+|.+.|.++++..-+..+++|+. |.++++||..++++..++.+|...|
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~---D~t~rvWd~~sg~C~~~l~gh~stv 294 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGST---DKTERVWDCSTGECTHSLQGHTSSV 294 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEec---CCcEEeEecCCCcEEEEecCCCceE
Confidence 67899999999999999999998888 9999999999999887899999998 9999999999999999999999999
Q ss_pred EEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCC
Q 036585 106 VLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDG 185 (304)
Q Consensus 106 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 185 (304)
.++... ...+++|+.|.+|++|++.++..+..+. +|..+|+++.++ +
T Consensus 295 ~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~-----------------------------~h~~~V~~v~~~--~ 341 (537)
T KOG0274|consen 295 RCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLR-----------------------------GHTGPVNCVQLD--E 341 (537)
T ss_pred EEEEcc--CceEeeccCCceEEEEeccCcceEEEec-----------------------------cccccEEEEEec--C
Confidence 998875 4578889999999999999888877664 577899999997 8
Q ss_pred cEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC-ceeeeeeccCCCCc
Q 036585 186 RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG-KEVASWMSFDTEPP 264 (304)
Q Consensus 186 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~i~ 264 (304)
.++++|+.||+|++||..+++++.++. +|...|+++.+.+. .++++|+.|+.|++||+.+. +++..+.+|..-+.
T Consensus 342 ~~lvsgs~d~~v~VW~~~~~~cl~sl~---gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~ 417 (537)
T KOG0274|consen 342 PLLVSGSYDGTVKVWDPRTGKCLKSLS---GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVS 417 (537)
T ss_pred CEEEEEecCceEEEEEhhhceeeeeec---CCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccc
Confidence 899999999999999999999999999 79999999988765 89999999999999999999 99999999999887
Q ss_pred eEEeCCCCcEEEEecCc--eEEeccCCc-ccccccc
Q 036585 265 VIKWAPGSLMFVTGSSE--LSFWIPDLS-KLGAYVG 297 (304)
Q Consensus 265 ~~~~~~~~~~l~s~~~d--~~iw~~~~~-~~~~~~~ 297 (304)
.+.+ .+++|++++.| +++|+.+.. .++.+.+
T Consensus 418 ~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~ 451 (537)
T KOG0274|consen 418 SLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEG 451 (537)
T ss_pred cccc--ccceeEeccccccEEEeecccCceeeeecc
Confidence 6665 67799999999 999988654 4455555
No 75
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=7.8e-31 Score=199.15 Aligned_cols=243 Identities=14% Similarity=0.181 Sum_probs=208.6
Q ss_pred ceeeeecceeeE---eecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEE
Q 036585 10 DKVSLELSEEIL---QSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86 (304)
Q Consensus 10 ~~~~~~~~~~~i---~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~v 86 (304)
-...+++|...+ .++++...+++++.|..|+||.............|..+|+.+..+|.|.+|++++. |++..+
T Consensus 253 ~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~---d~~w~F 329 (506)
T KOG0289|consen 253 ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASN---DGTWAF 329 (506)
T ss_pred hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecC---CceEEE
Confidence 344567776654 45677889999999999999999888888888999999999999999999999999 999999
Q ss_pred EEccCceeeeecccc--cccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCe
Q 036585 87 LSLHDNKYSRYFKGH--HDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPL 164 (304)
Q Consensus 87 wd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (304)
.|++++..+...... .-.+++.+|+|||..|.+|..|+.++|||+.++.....|.
T Consensus 330 sd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp----------------------- 386 (506)
T KOG0289|consen 330 SDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP----------------------- 386 (506)
T ss_pred EEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC-----------------------
Confidence 999999877665532 2358999999999999999999999999999887665554
Q ss_pred EEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEE
Q 036585 165 DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHA 244 (304)
Q Consensus 165 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v 244 (304)
+|.++|..++|+.+|-+|++++.|+.|++||+|..+...++... ....+.++.|.+.|.+|+.++.|=.|++
T Consensus 387 ------ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~--~~~~v~s~~fD~SGt~L~~~g~~l~Vy~ 458 (506)
T KOG0289|consen 387 ------GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLD--EKKEVNSLSFDQSGTYLGIAGSDLQVYI 458 (506)
T ss_pred ------CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecc--ccccceeEEEcCCCCeEEeecceeEEEE
Confidence 78899999999999999999999999999999999988888853 3347999999999999999987766666
Q ss_pred EecC--CCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEec
Q 036585 245 WSVR--SGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWI 286 (304)
Q Consensus 245 ~d~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~ 286 (304)
++-. +..++..+..|.+..+++.|....+++++++.| .+++.
T Consensus 459 ~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 459 CKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred EecccccceeeehhhhcccccceeeecccceEEeeccchhheEEee
Confidence 6632 456778888899999999999999999999999 66654
No 76
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=8.9e-32 Score=196.37 Aligned_cols=217 Identities=20% Similarity=0.307 Sum_probs=186.4
Q ss_pred eeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccC------------c------eeeeecccccccEEEEEEcC
Q 036585 51 KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD------------N------KYSRYFKGHHDRVVLLSLCS 112 (304)
Q Consensus 51 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~------------~------~~~~~~~~~~~~v~~~~~~~ 112 (304)
..+..|+.++.+.+|+|||.++++|+. |..|+|.|++. + -.++++-.|.++|.++.|+|
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsa---D~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSA---DASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCC---cceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence 345679999999999999999999999 99999999871 1 13566778999999999999
Q ss_pred CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEee
Q 036585 113 SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT 192 (304)
Q Consensus 113 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 192 (304)
....|++++.|++|+++|+......+.++.- ....+|.++.|+|.|.++++|.
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~---------------------------qd~~~vrsiSfHPsGefllvgT 235 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKRAFKVF---------------------------QDTEPVRSISFHPSGEFLLVGT 235 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHHHHHHh---------------------------hccceeeeEeecCCCceEEEec
Confidence 9999999999999999999876554433321 1335789999999999999999
Q ss_pred CCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeee-eccC-CCCceEEeCC
Q 036585 193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASW-MSFD-TEPPVIKWAP 270 (304)
Q Consensus 193 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~-~~i~~~~~~~ 270 (304)
.-..+++||+.+.++...-.....|.+.|+++.+++.+++.++++.||.|++||--+++++.++ ..|. ..|.+..|..
T Consensus 236 dHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk 315 (430)
T KOG0640|consen 236 DHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK 315 (430)
T ss_pred CCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEcc
Confidence 9999999999999988877766779999999999999999999999999999999999998888 4564 4689999999
Q ss_pred CCcEEEEecCc--eEEeccCCc-ccccccc
Q 036585 271 GSLMFVTGSSE--LSFWIPDLS-KLGAYVG 297 (304)
Q Consensus 271 ~~~~l~s~~~d--~~iw~~~~~-~~~~~~~ 297 (304)
+++++.+.+.| +++|.+... .+.+|.|
T Consensus 316 n~kyiLsSG~DS~vkLWEi~t~R~l~~YtG 345 (430)
T KOG0640|consen 316 NGKYILSSGKDSTVKLWEISTGRMLKEYTG 345 (430)
T ss_pred CCeEEeecCCcceeeeeeecCCceEEEEec
Confidence 99999999999 999998654 4566654
No 77
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-31 Score=217.26 Aligned_cols=214 Identities=17% Similarity=0.298 Sum_probs=176.3
Q ss_pred eeeec-ccccceeEEEEccCCCeEEEEecCCCCCceEEEEccC--------------------------------c----
Q 036585 50 LKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD--------------------------------N---- 92 (304)
Q Consensus 50 ~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~--------------------------------~---- 92 (304)
.+.+. .|.+.|.++.|++||++||+|+. |+.|+||.+.. .
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGe---D~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~ 335 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGE---DGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSR 335 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCC---CceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccc
Confidence 45566 89999999999999999999999 99999998765 0
Q ss_pred ------------------------eeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecccee
Q 036585 93 ------------------------KYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAA 148 (304)
Q Consensus 93 ------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 148 (304)
++++.+.+|.+.|..+.|+.++ +|++++.|.+|++|++....++..|.
T Consensus 336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~------- 407 (712)
T KOG0283|consen 336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS------- 407 (712)
T ss_pred ccccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-------
Confidence 1234467899999999999765 89999999999999999999998886
Q ss_pred EecCCCeEEEecCCCeEEEEecCCCCCceEEEEec-CCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEc
Q 036585 149 AYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS 227 (304)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s 227 (304)
|...|+|++|+| |.++|++|+-||+|+||++...+...-.. ...-|++++|+
T Consensus 408 -----------------------HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D----l~~lITAvcy~ 460 (712)
T KOG0283|consen 408 -----------------------HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND----LRDLITAVCYS 460 (712)
T ss_pred -----------------------cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh----hhhhheeEEec
Confidence 778999999999 78999999999999999998877665554 55899999999
Q ss_pred CCCcEEEEecCCCcEEEEecCCCceeeeee--cc------CCCCceEEeCCCCc-EEEEecCc--eEEeccC-Ccccccc
Q 036585 228 PEGMFVISGSGDGSVHAWSVRSGKEVASWM--SF------DTEPPVIKWAPGSL-MFVTGSSE--LSFWIPD-LSKLGAY 295 (304)
Q Consensus 228 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~------~~~i~~~~~~~~~~-~l~s~~~d--~~iw~~~-~~~~~~~ 295 (304)
|||++.+.|+.+|.+++|++...+...... .| ...|+++.|.|... .+++.+.| |||++.. .+.+..|
T Consensus 461 PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~Kf 540 (712)
T KOG0283|consen 461 PDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKF 540 (712)
T ss_pred cCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhh
Confidence 999999999999999999998877654441 11 23799999998543 34444555 9999984 4445677
Q ss_pred ccCCCC
Q 036585 296 VGRNRG 301 (304)
Q Consensus 296 ~~~~~g 301 (304)
+|.+.+
T Consensus 541 KG~~n~ 546 (712)
T KOG0283|consen 541 KGFRNT 546 (712)
T ss_pred cccccC
Confidence 766554
No 78
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=1.2e-29 Score=209.47 Aligned_cols=227 Identities=13% Similarity=0.166 Sum_probs=172.9
Q ss_pred eeeeecceee---Eeeccc-CcEEEEeeCCCeEEEEecCCcc--------eeeeecccccceeEEEEccCCCeE-EEEec
Q 036585 11 KVSLELSEEI---LQSMEV-GIYLVTASDDESIRLYDVTAAT--------CLKTINSKKYGVDLVCFTSHPTTV-IYSSK 77 (304)
Q Consensus 11 ~~~~~~~~~~---i~~~~~-~~~l~~~~~d~~i~vw~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~ 77 (304)
...+.+|... +.|+|+ +++|++|+.|++|+|||+.++. ++..+.+|...|.+++|+|++..+ ++++.
T Consensus 67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~ 146 (568)
T PTZ00420 67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGF 146 (568)
T ss_pred EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeC
Confidence 4456666653 667886 7899999999999999997542 344678899999999999998865 57777
Q ss_pred CCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEE
Q 036585 78 NGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVF 157 (304)
Q Consensus 78 ~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (304)
|+.|++||+.+++.+..+. |...|.+++|+|+|.+|++++.|+.|++||+++++....+.
T Consensus 147 ---DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~---------------- 206 (568)
T PTZ00420 147 ---DSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFH---------------- 206 (568)
T ss_pred ---CCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEe----------------
Confidence 9999999999998777775 66789999999999999999999999999999987765554
Q ss_pred EecCCCeEEEEecCCCCCc-----eEEEEecCCcEEEEeeCCC----eEEEEEcCC-CceeEEEEeCCCCCCcceEEEEc
Q 036585 158 GYEKGPLDIFSVGGDISDA-----NVVKFSNDGRLMLLTTMEG----HIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFS 227 (304)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg----~i~~~d~~~-~~~~~~~~~~~~~~~~i~~~~~s 227 (304)
+|.+.+ ....|++++.++++++.++ +|++||+++ ++++..+... ...+.+......
T Consensus 207 -------------gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld-~~~~~L~p~~D~ 272 (568)
T PTZ00420 207 -------------IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSID-NASAPLIPHYDE 272 (568)
T ss_pred -------------cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEec-CCccceEEeeeC
Confidence 233332 2234568889999887764 799999985 5556555422 233344434445
Q ss_pred CCCcEEEEecCCCcEEEEecCCCce--eeeeeccCCCCceEEeCCCC
Q 036585 228 PEGMFVISGSGDGSVHAWSVRSGKE--VASWMSFDTEPPVIKWAPGS 272 (304)
Q Consensus 228 ~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~~ 272 (304)
+++.++++|+.|+.|++|++..+.. +..+. +..+..+++|.|..
T Consensus 273 ~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 273 STGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred CCCCEEEEEECCCeEEEEEccCCcEEeecccc-cCCCccceEEcccc
Confidence 5688899999999999999977643 22223 56788999999964
No 79
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.2e-30 Score=185.87 Aligned_cols=225 Identities=19% Similarity=0.344 Sum_probs=193.8
Q ss_pred eeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee--cccccccEEEEEEcC-CCCEEEEcccCCeEE
Q 036585 51 KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY--FKGHHDRVVLLSLCS-SKDCFISGSLDRTVL 127 (304)
Q Consensus 51 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~ 127 (304)
+.+++|...+.+++|+.+|..|++++. |+++.+|+++..+.... ..+|.+.|-.++|+| +...|++++.|.+|+
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~---dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir 90 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSF---DKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIR 90 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeeccc---CCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEE
Confidence 557789999999999999999999999 99999999987754443 458999999999997 567999999999999
Q ss_pred EEeCCcceeeceEEEecc-ceeEecCCCeEE--EecCCCeEEEEecC--------CCCCceEEEEecCCcEEEEeeCCCe
Q 036585 128 LWDQRAEKCQGLLRVQGR-PAAAYDDQGLVF--GYEKGPLDIFSVGG--------DISDANVVKFSNDGRLMLLTTMEGH 196 (304)
Q Consensus 128 iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~ 196 (304)
+||++.+++......... ..+.++|++..+ +..+..+...+... ....++.+.|+.++.+|+.....|.
T Consensus 91 ~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 91 IWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred EEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence 999999999887766544 457788887554 44445555555443 3356788999988888888888899
Q ss_pred EEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEE
Q 036585 197 IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFV 276 (304)
Q Consensus 197 i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 276 (304)
|.|.....-+++..++ .|.....|+.|+|+|+|+|+|+.|-.+.+||+...-+++.+..+.-+|+.+.|+.||++||
T Consensus 171 v~ILsypsLkpv~si~---AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIK---AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred EEEEeccccccccccc---cCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceee
Confidence 9999999999999998 7889999999999999999999999999999999889999999999999999999999999
Q ss_pred EecCc
Q 036585 277 TGSSE 281 (304)
Q Consensus 277 s~~~d 281 (304)
+||+|
T Consensus 248 SaSED 252 (313)
T KOG1407|consen 248 SASED 252 (313)
T ss_pred ccCcc
Confidence 99999
No 80
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=9.7e-31 Score=201.22 Aligned_cols=233 Identities=17% Similarity=0.248 Sum_probs=195.5
Q ss_pred eeEeecccCc-EEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee
Q 036585 19 EILQSMEVGI-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY 97 (304)
Q Consensus 19 ~~i~~~~~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~ 97 (304)
..+.++|... -+|+++. -.+.+|+..+.....++......+++++|-.||+.+++|.. .|.|+|||+.+...++.
T Consensus 30 ssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~---sG~V~vfD~k~r~iLR~ 105 (487)
T KOG0310|consen 30 SSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDE---SGHVKVFDMKSRVILRQ 105 (487)
T ss_pred eeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCC---cCcEEEeccccHHHHHH
Confidence 3466777532 3444443 46999999988888888888889999999999999999998 99999999877778889
Q ss_pred cccccccEEEEEEcCC-CCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCc
Q 036585 98 FKGHHDRVVLLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDA 176 (304)
Q Consensus 98 ~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 176 (304)
+.+|+.++....|+|+ +..|++|+.|+.+++||+.+.... .++.+|+..|
T Consensus 106 ~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~-----------------------------~~l~~htDYV 156 (487)
T KOG0310|consen 106 LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQ-----------------------------AELSGHTDYV 156 (487)
T ss_pred HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEE-----------------------------EEecCCccee
Confidence 9999999999999995 557888999999999999887642 2234799999
Q ss_pred eEEEEecCC-cEEEEeeCCCeEEEEEcCCC-ceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC-cee
Q 036585 177 NVVKFSNDG-RLMLLTTMEGHIHVLDSFRG-TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG-KEV 253 (304)
Q Consensus 177 ~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~-~~~ 253 (304)
.+.+|+|.. ..+++|+.||.|++||++.. ..+.++. |..+|..+.+-|.|..+++++. +.|+|||+-+| +.+
T Consensus 157 R~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln----hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll 231 (487)
T KOG0310|consen 157 RCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN----HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLL 231 (487)
T ss_pred EeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec----CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceeh
Confidence 999999964 47889999999999999987 6666665 8999999999999999999974 46999999854 555
Q ss_pred eeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCC
Q 036585 254 ASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDL 289 (304)
Q Consensus 254 ~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~ 289 (304)
..+..|...|+|+++..++..|++++-| +++|++..
T Consensus 232 ~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~ 269 (487)
T KOG0310|consen 232 TSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTN 269 (487)
T ss_pred hhhhcccceEEEEEeecCCceEeecccccceEEEEccc
Confidence 5566699999999999999999999999 99998543
No 81
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.98 E-value=2.1e-30 Score=200.96 Aligned_cols=271 Identities=17% Similarity=0.307 Sum_probs=208.7
Q ss_pred eeeeecceeeEe---ecccCcEEEEeeCCCeEEEEecCCcc----eeeeec-ccccceeEEEEccCCCeEEEEecCCCCC
Q 036585 11 KVSLELSEEILQ---SMEVGIYLVTASDDESIRLYDVTAAT----CLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDE 82 (304)
Q Consensus 11 ~~~~~~~~~~i~---~~~~~~~l~~~~~d~~i~vw~~~~~~----~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~d~ 82 (304)
.+.+++|..+|. +-|.|-+|++|+.|.+|++||++... ..+.+. .....|+++.|++.+..|++.+. ..
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg---~a 236 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG---SA 236 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec---Cc
Confidence 345666776655 44679999999999999999987532 222232 23347999999999999998887 88
Q ss_pred ceEEEEccCceeee------------ecccccccEEEEEEcCCC-CEEEEcccCCeEEEEeCCcceee-ceEEEec----
Q 036585 83 SLRLLSLHDNKYSR------------YFKGHHDRVVLLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQ-GLLRVQG---- 144 (304)
Q Consensus 83 ~i~vwd~~~~~~~~------------~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~---- 144 (304)
..+|+|-...+.+. .-++|...++|.+|+|.. ..|++++.||++++||+...+.. .+++...
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 99999976543322 235899999999999954 58999999999999999765533 3333321
Q ss_pred ---cceeEecCCCeEE--EecCCCeEEEEec------------CCCC--CceEEEEecCCcEEEEeeCCCeEEEEEcCCC
Q 036585 145 ---RPAAAYDDQGLVF--GYEKGPLDIFSVG------------GDIS--DANVVKFSNDGRLMLLTTMEGHIHVLDSFRG 205 (304)
Q Consensus 145 ---~~~~~~~~~~~~~--~~~~~~~~~~~~~------------~~~~--~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 205 (304)
.....|++++..+ +..+|.+++|+.. .|.. .|+++.||++|++|++-+.|+++++||+++.
T Consensus 317 Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred ccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence 2246788887544 6778999999864 2554 8999999999999999999999999999875
Q ss_pred c-eeEEEEeCCCCCCcceEEEEcCCCcEEEEec------CCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEe
Q 036585 206 T-LLSTYNVKPVSRNSTLEASFSPEGMFVISGS------GDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTG 278 (304)
Q Consensus 206 ~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~------~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 278 (304)
+ ++...... ....+-+.++|||+.++|++|. ..|.+.+||..+.+.+..+.-....|..+.|+|--+.+..+
T Consensus 397 kkpL~~~tgL-~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~g 475 (641)
T KOG0772|consen 397 KKPLNVRTGL-PTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAG 475 (641)
T ss_pred ccchhhhcCC-CccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeee
Confidence 4 44444322 2455677899999999999985 34689999999999999987778889999999988888888
Q ss_pred cCc--eEEe
Q 036585 279 SSE--LSFW 285 (304)
Q Consensus 279 ~~d--~~iw 285 (304)
+.| +++|
T Consensus 476 sgdG~~~vy 484 (641)
T KOG0772|consen 476 SGDGTAHVY 484 (641)
T ss_pred cCCCceEEE
Confidence 877 5544
No 82
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.98 E-value=2e-30 Score=217.16 Aligned_cols=249 Identities=16% Similarity=0.198 Sum_probs=205.2
Q ss_pred ceeeEeecccCcEEEEeeCCCeEEEEecCC------------------cceeeeecccccceeEEEEccCCCeEEEEecC
Q 036585 17 SEEILQSMEVGIYLVTASDDESIRLYDVTA------------------ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN 78 (304)
Q Consensus 17 ~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 78 (304)
...++.|++||++||+|+.|+.|.||+... .+.+..+.+|...|..++|+|++.+|++++.
T Consensus 71 sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~- 149 (942)
T KOG0973|consen 71 SVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSL- 149 (942)
T ss_pred ceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecc-
Confidence 345688999999999999999999999762 2366788999999999999999999999998
Q ss_pred CCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEE
Q 036585 79 GWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFG 158 (304)
Q Consensus 79 ~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (304)
|++|.+|+..+.+.+..+.+|...|..+.|.|-|++|++-+.|++|++|++.+-...+.+..+-...
T Consensus 150 --DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~----------- 216 (942)
T KOG0973|consen 150 --DNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEES----------- 216 (942)
T ss_pred --cceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhC-----------
Confidence 9999999999999999999999999999999999999999999999999977655555443221100
Q ss_pred ecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC----CCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcC-----C
Q 036585 159 YEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM----EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-----E 229 (304)
Q Consensus 159 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~-----~ 229 (304)
........+.|||||++|++... -..+.|.+-.+.+.-..+. +|..++.+++|+| .
T Consensus 217 ------------~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~Lv---GH~~p~evvrFnP~lfe~~ 281 (942)
T KOG0973|consen 217 ------------PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLV---GHSAPVEVVRFNPKLFERN 281 (942)
T ss_pred ------------CCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeee---cCCCceEEEEeChHHhccc
Confidence 12235677999999999998632 3368888887777777777 7999999999998 1
Q ss_pred Cc------------EEEEecCCCcEEEEecCCCceeeee-eccCCCCceEEeCCCCcEEEEecCc--eEEeccCCccccc
Q 036585 230 GM------------FVISGSGDGSVHAWSVRSGKEVASW-MSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKLGA 294 (304)
Q Consensus 230 ~~------------~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~~~ 294 (304)
.+ .+|+|+.|++|.||.....+++... .-....|..++|+|||..|+.+|.| +.+..++-+.+..
T Consensus 282 ~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG~ 361 (942)
T KOG0973|consen 282 NKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELGV 361 (942)
T ss_pred cccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhCc
Confidence 12 6789999999999999887776554 3346789999999999999999999 6667766655543
No 83
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=4.1e-30 Score=196.47 Aligned_cols=234 Identities=22% Similarity=0.328 Sum_probs=198.2
Q ss_pred eeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeec
Q 036585 19 EILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYF 98 (304)
Q Consensus 19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~ 98 (304)
-.+..++||+|||+|+.|..|.||+.++.+.++.+.+|.+.|.+++|-.....+++++. |++|++|+++....+.++
T Consensus 206 l~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~---Drsvkvw~~~~~s~vetl 282 (479)
T KOG0299|consen 206 LTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASA---DRSVKVWSIDQLSYVETL 282 (479)
T ss_pred EEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeec---CCceEEEehhHhHHHHHH
Confidence 34778899999999999999999999999999999999999999999999999999998 999999999999999999
Q ss_pred ccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceE
Q 036585 99 KGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANV 178 (304)
Q Consensus 99 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 178 (304)
-+|++.|.++.....++.+-+|+.|+++++|++..... ..+. ++.+.+.|
T Consensus 283 yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq-lifr-----------------------------g~~~sidc 332 (479)
T KOG0299|consen 283 YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ-LIFR-----------------------------GGEGSIDC 332 (479)
T ss_pred hCCccceeeechhcccceEEeccccceeEEEeccccce-eeee-----------------------------CCCCCeee
Confidence 99999999999988888888888999999999943322 2222 45667888
Q ss_pred EEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCC---------CCCcceEEEEcCCCcEEEEecCCCcEEEEecCC
Q 036585 179 VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV---------SRNSTLEASFSPEGMFVISGSGDGSVHAWSVRS 249 (304)
Q Consensus 179 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~---------~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~ 249 (304)
++|-.+. .|++|+.+|.|.+|++.+.+++.+....++ +...|++++..|...++++|+.+|.|++|-+.+
T Consensus 333 v~~In~~-HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~ 411 (479)
T KOG0299|consen 333 VAFINDE-HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIED 411 (479)
T ss_pred EEEeccc-ceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecC
Confidence 9997554 599999999999999999999988774322 123789999999999999999999999999977
Q ss_pred C----ceeeeeeccCCCCceEEeCCCCcEEEEecCc----eEEecc
Q 036585 250 G----KEVASWMSFDTEPPVIKWAPGSLMFVTGSSE----LSFWIP 287 (304)
Q Consensus 250 ~----~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d----~~iw~~ 287 (304)
+ +++..+. -.+-|++++|+++|+.+++|... .+-|..
T Consensus 412 g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~ 456 (479)
T KOG0299|consen 412 GLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCL 456 (479)
T ss_pred Cccccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeEe
Confidence 6 3455554 67889999999999966666544 565644
No 84
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=3.4e-32 Score=218.50 Aligned_cols=224 Identities=19% Similarity=0.366 Sum_probs=208.6
Q ss_pred ccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccccccc
Q 036585 25 EVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDR 104 (304)
Q Consensus 25 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 104 (304)
..++.+++|+.|..+-+|.+.....+..|.+|..+|.++.|++....|++|+. +|+|++||++..+.++++.+|...
T Consensus 38 ~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Llaagsa---sgtiK~wDleeAk~vrtLtgh~~~ 114 (825)
T KOG0267|consen 38 KSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSA---SGTIKVWDLEEAKIVRTLTGHLLN 114 (825)
T ss_pred ccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhccccc---CCceeeeehhhhhhhhhhhccccC
Confidence 45789999999999999999888888889999999999999999999999998 999999999999999999999999
Q ss_pred EEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecC
Q 036585 105 VVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSND 184 (304)
Q Consensus 105 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 184 (304)
+.++.|+|-+.++++|+.|+.+++||.+...+...+. +|...+..+.|+|+
T Consensus 115 ~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~-----------------------------s~~~vv~~l~lsP~ 165 (825)
T KOG0267|consen 115 ITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK-----------------------------SHTRVVDVLRLSPD 165 (825)
T ss_pred cceeeeccceEEeccccccccceehhhhccCceeeec-----------------------------CCcceeEEEeecCC
Confidence 9999999999999999999999999999777766654 57778999999999
Q ss_pred CcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCc
Q 036585 185 GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPP 264 (304)
Q Consensus 185 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~ 264 (304)
|++++.++.|..+++||+..|+....|. .|...+..+.|+|..-.+++|+.|+++++||+++.+.+.........|.
T Consensus 166 Gr~v~~g~ed~tvki~d~~agk~~~ef~---~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~ 242 (825)
T KOG0267|consen 166 GRWVASGGEDNTVKIWDLTAGKLSKEFK---SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVR 242 (825)
T ss_pred CceeeccCCcceeeeecccccccccccc---cccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCce
Confidence 9999999999999999999999999998 7889999999999999999999999999999999999888888889999
Q ss_pred eEEeCCCCcEEEEecCc-eE
Q 036585 265 VIKWAPGSLMFVTGSSE-LS 283 (304)
Q Consensus 265 ~~~~~~~~~~l~s~~~d-~~ 283 (304)
+++|+|++..+++|... .+
T Consensus 243 ~~~fn~~~~~~~~G~q~sl~ 262 (825)
T KOG0267|consen 243 SLAFNPDGKIVLSGEQISLS 262 (825)
T ss_pred eeeecCCceeeecCchhhhh
Confidence 99999999999998877 55
No 85
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.6e-29 Score=180.75 Aligned_cols=209 Identities=22% Similarity=0.297 Sum_probs=183.5
Q ss_pred eecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeC
Q 036585 52 TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQ 131 (304)
Q Consensus 52 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 131 (304)
.+++|..+++.+.++.+|.+|++++. |....||-..+|+.+.++.+|++.|+|++..-+.+.+++|+.|.++++||+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaK---D~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAK---DSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDV 81 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecC---CCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEc
Confidence 46789999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC-----CCeEEEEEcC---
Q 036585 132 RAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM-----EGHIHVLDSF--- 203 (304)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~~~d~~--- 203 (304)
++++++..++.. .+|..+.|+++|++++.... .+.|.++|++
T Consensus 82 ~tGk~la~~k~~------------------------------~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~ 131 (327)
T KOG0643|consen 82 ETGKQLATWKTN------------------------------SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDS 131 (327)
T ss_pred CCCcEEEEeecC------------------------------CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCCh
Confidence 999998887633 57888999999998877654 4679999998
Q ss_pred ----CCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCce-eeeeeccCCCCceEEeCCCCcEEEEe
Q 036585 204 ----RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKE-VASWMSFDTEPPVIKWAPGSLMFVTG 278 (304)
Q Consensus 204 ----~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~s~ 278 (304)
..++...+. .+...++.+-|+|-+++|++|.+||.|.+||+++++. +.....|...|+.++++||..+++++
T Consensus 132 ~~~~s~ep~~kI~---t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~ 208 (327)
T KOG0643|consen 132 SDIDSEEPYLKIP---TPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITG 208 (327)
T ss_pred hhhcccCceEEec---CCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEec
Confidence 344455555 4678999999999999999999999999999999855 55668899999999999999999999
Q ss_pred cCc--eEEeccC-Cccccccc
Q 036585 279 SSE--LSFWIPD-LSKLGAYV 296 (304)
Q Consensus 279 ~~d--~~iw~~~-~~~~~~~~ 296 (304)
+.| -++||.. ++.+++|.
T Consensus 209 s~Dttakl~D~~tl~v~Kty~ 229 (327)
T KOG0643|consen 209 SKDTTAKLVDVRTLEVLKTYT 229 (327)
T ss_pred ccCccceeeeccceeeEEEee
Confidence 999 8999874 34444443
No 86
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=7.5e-30 Score=213.70 Aligned_cols=240 Identities=18% Similarity=0.274 Sum_probs=202.6
Q ss_pred eEeecccCcEEEEee--CCCeEEEEecCC------------cceeeeecccccceeEEEEccCCCeEEEEecCCCCCceE
Q 036585 20 ILQSMEVGIYLVTAS--DDESIRLYDVTA------------ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 85 (304)
Q Consensus 20 ~i~~~~~~~~l~~~~--~d~~i~vw~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~ 85 (304)
.|..+|+|..+|||+ .|+.++||+.+. .+.+.+...|.+.|.|+.|+|||++||+|+. |+.|.
T Consensus 18 SIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD---D~~v~ 94 (942)
T KOG0973|consen 18 SIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD---DRLVM 94 (942)
T ss_pred EEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC---cceEE
Confidence 578899999999999 999999998652 2345667789999999999999999999999 99999
Q ss_pred EEEccC-------c-----------eeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccce
Q 036585 86 LLSLHD-------N-----------KYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA 147 (304)
Q Consensus 86 vwd~~~-------~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 147 (304)
||.... + +.+..+.+|...|..++|+|++.+|++++.|++|.+||.++.+....+.
T Consensus 95 iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~------ 168 (942)
T KOG0973|consen 95 IWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR------ 168 (942)
T ss_pred EeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee------
Confidence 999872 0 2466788999999999999999999999999999999999987766665
Q ss_pred eEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCC---CCCCcceEE
Q 036585 148 AAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP---VSRNSTLEA 224 (304)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~---~~~~~i~~~ 224 (304)
+|.+.|..+.|.|-|++|++-+.|++|++|++.+....+.+..+- ........+
T Consensus 169 -----------------------~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~Rl 225 (942)
T KOG0973|consen 169 -----------------------GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRL 225 (942)
T ss_pred -----------------------cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeec
Confidence 788999999999999999999999999999988777776665321 234467789
Q ss_pred EEcCCCcEEEEec----CCCcEEEEecCCCceeeeeeccCCCCceEEeCCC-----Cc------------EEEEecCc--
Q 036585 225 SFSPEGMFVISGS----GDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPG-----SL------------MFVTGSSE-- 281 (304)
Q Consensus 225 ~~s~~~~~l~~~~----~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-----~~------------~l~s~~~d-- 281 (304)
.|||||++|++.. .-.++.|.+-.+.+.-..+.+|.+++.+++|+|. .. .+|+|+.|
T Consensus 226 SWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrS 305 (942)
T KOG0973|consen 226 SWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRS 305 (942)
T ss_pred ccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCcc
Confidence 9999999999874 2346889988777878888999999999999981 11 67889999
Q ss_pred eEEeccCCcc
Q 036585 282 LSFWIPDLSK 291 (304)
Q Consensus 282 ~~iw~~~~~~ 291 (304)
+.||.....+
T Consensus 306 lSVW~T~~~R 315 (942)
T KOG0973|consen 306 LSVWNTALPR 315 (942)
T ss_pred EEEEecCCCC
Confidence 9999885544
No 87
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.1e-28 Score=172.90 Aligned_cols=243 Identities=17% Similarity=0.270 Sum_probs=199.0
Q ss_pred eeeEeecccCcEEEEeeCCCeEEEEecCC--cce---eeeecccccceeEEEEccC----CCeEEEEecCCCCCceEEEE
Q 036585 18 EEILQSMEVGIYLVTASDDESIRLYDVTA--ATC---LKTINSKKYGVDLVCFTSH----PTTVIYSSKNGWDESLRLLS 88 (304)
Q Consensus 18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~--~~~---~~~~~~~~~~v~~~~~~~~----~~~l~~~~~~~~d~~i~vwd 88 (304)
.-.+.|+|+|++|++|+.|.+|++.-.+. .+. -..+..|.+.|..++|-.+ +..|++++.+ |..|++-|
T Consensus 92 iyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gag--dc~iy~td 169 (350)
T KOG0641|consen 92 IYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAG--DCKIYITD 169 (350)
T ss_pred EEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCC--cceEEEee
Confidence 34578899999999999999999976543 222 2457779999999999754 4467777654 89999999
Q ss_pred ccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEE
Q 036585 89 LHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFS 168 (304)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (304)
...++..+.+.+|++.|.++- +-++-.+++|+.|.+|++||++-..++..+...-..
T Consensus 170 c~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~---------------------- 226 (350)
T KOG0641|consen 170 CGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHD---------------------- 226 (350)
T ss_pred cCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccC----------------------
Confidence 999999999999999998763 336789999999999999999988877765422110
Q ss_pred ecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecC
Q 036585 169 VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVR 248 (304)
Q Consensus 169 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~ 248 (304)
-.-..+.|.+++..|.|++|++|-.|....+||++.++.+..+. .|...|.++.|||...|+++++.|..|++-|++
T Consensus 227 ~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~---phsadir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 227 GGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH---PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred CCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC---CCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence 00123678999999999999999999999999999999999998 799999999999999999999999999999986
Q ss_pred CC----ceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccC
Q 036585 249 SG----KEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPD 288 (304)
Q Consensus 249 ~~----~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~ 288 (304)
.. -++.....|...+..+.|+|..--+++.+.| ..+|.++
T Consensus 304 gdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 304 GDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred cchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 32 1233446788888999999999888888888 9999775
No 88
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.7e-30 Score=188.74 Aligned_cols=234 Identities=19% Similarity=0.274 Sum_probs=202.3
Q ss_pred CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEc------cCc--------
Q 036585 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL------HDN-------- 92 (304)
Q Consensus 27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~------~~~-------- 92 (304)
...+.+++.|.+.+||.++++.++.++.+|.+.|+++.|++.+.++++++. |++-.||.. ...
T Consensus 160 qpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSG---D~taHIW~~av~~~vP~~~a~~~hSs 236 (481)
T KOG0300|consen 160 QPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASG---DETAHIWKAAVNWEVPSNNAPSDHSS 236 (481)
T ss_pred CcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccC---CcchHHHHHhhcCcCCCCCCCCCCCc
Confidence 468899999999999999999999999999999999999999999999998 999999962 110
Q ss_pred --------------------------eeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccc
Q 036585 93 --------------------------KYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146 (304)
Q Consensus 93 --------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 146 (304)
.++..+.+|.+.|.+..|...++.+++++.|.+..+||++++..+..+.
T Consensus 237 EeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~Lt----- 311 (481)
T KOG0300|consen 237 EEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILT----- 311 (481)
T ss_pred hhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceecccc-----
Confidence 1245577899999999999999999999999999999999998877665
Q ss_pred eeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEE
Q 036585 147 AAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF 226 (304)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~ 226 (304)
+|....+.++-+|..+++++++.|-+.++||++. .+.......+|...|+++.|
T Consensus 312 ------------------------GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe--aI~sV~VFQGHtdtVTS~vF 365 (481)
T KOG0300|consen 312 ------------------------GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE--AIQSVAVFQGHTDTVTSVVF 365 (481)
T ss_pred ------------------------CcchhccccccCCcceEEEEeccCceeEeccchh--hcceeeeecccccceeEEEE
Confidence 7888899999999999999999999999999983 33333333489999999999
Q ss_pred cCCCcEEEEecCCCcEEEEecCCCc-eeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCccccccc
Q 036585 227 SPEGMFVISGSGDGSVHAWSVRSGK-EVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKLGAYV 296 (304)
Q Consensus 227 s~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~~~~~ 296 (304)
..+. .+++|+.|.+|+|||+++.+ ++.++. ...+++.++.+..+..++.--++ +++|+++..++..+.
T Consensus 366 ~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlP 436 (481)
T KOG0300|consen 366 NTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLP 436 (481)
T ss_pred ecCC-ceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCC
Confidence 8765 58899999999999999865 456664 56789999999998888888777 999999999987765
No 89
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=7.4e-30 Score=194.77 Aligned_cols=233 Identities=15% Similarity=0.243 Sum_probs=184.5
Q ss_pred Eeeccc-CcEEEEeeCCCeEEEEecCCcc----------eeeeecccccceeEEEEccCCC-eEEEEecCCCCCceEEEE
Q 036585 21 LQSMEV-GIYLVTASDDESIRLYDVTAAT----------CLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDESLRLLS 88 (304)
Q Consensus 21 i~~~~~-~~~l~~~~~d~~i~vw~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~d~~i~vwd 88 (304)
++.+|. ..++|+.+..+.+.|||..+.. +-.++.+|...-..++|++... .|++++. |+.|++||
T Consensus 130 aRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~---d~~i~lwd 206 (422)
T KOG0264|consen 130 ARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD---DHTICLWD 206 (422)
T ss_pred hhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC---CCcEEEEe
Confidence 556665 4678888899999999986422 2236889998788899999655 5666776 99999999
Q ss_pred ccCce-------eeeecccccccEEEEEEcC-CCCEEEEcccCCeEEEEeCCcc--eeeceEEEeccceeEecCCCeEEE
Q 036585 89 LHDNK-------YSRYFKGHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAE--KCQGLLRVQGRPAAAYDDQGLVFG 158 (304)
Q Consensus 89 ~~~~~-------~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 158 (304)
+.... +...+.+|...|..++|++ +..+|++++.|+.+.|||+|+. +.....
T Consensus 207 i~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~------------------ 268 (422)
T KOG0264|consen 207 INAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSV------------------ 268 (422)
T ss_pred ccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccc------------------
Confidence 97542 3456789999999999998 5668999999999999999963 222211
Q ss_pred ecCCCeEEEEecCCCCCceEEEEecC-CcEEEEeeCCCeEEEEEcCCCc-eeEEEEeCCCCCCcceEEEEcCC-CcEEEE
Q 036585 159 YEKGPLDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGT-LLSTYNVKPVSRNSTLEASFSPE-GMFVIS 235 (304)
Q Consensus 159 ~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~ 235 (304)
.+|.+.+++++|+|- +..||+|+.|++|.+||+|+.+ ++.++. +|...|.++.|||. ...||+
T Consensus 269 -----------~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e---~H~dev~~V~WSPh~etvLAS 334 (422)
T KOG0264|consen 269 -----------KAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE---GHEDEVFQVEWSPHNETVLAS 334 (422)
T ss_pred -----------cccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceecc---CCCcceEEEEeCCCCCceeEe
Confidence 368899999999994 5678889999999999999754 444555 79999999999995 567889
Q ss_pred ecCCCcEEEEecCCC--------------ceeeeeeccCCCCceEEeCCCCcE-EEEecCc--eEEeccC
Q 036585 236 GSGDGSVHAWSVRSG--------------KEVASWMSFDTEPPVIKWAPGSLM-FVTGSSE--LSFWIPD 288 (304)
Q Consensus 236 ~~~dg~i~v~d~~~~--------------~~~~~~~~~~~~i~~~~~~~~~~~-l~s~~~d--~~iw~~~ 288 (304)
++.|+.+.|||+..- +++..-.||...|..+.|+|+..+ +++.++| +.||.+.
T Consensus 335 Sg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 335 SGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 999999999999642 123444789999999999998865 5667777 9999875
No 90
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.3e-29 Score=201.49 Aligned_cols=236 Identities=16% Similarity=0.260 Sum_probs=202.3
Q ss_pred CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccc-ccccE
Q 036585 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKG-HHDRV 105 (304)
Q Consensus 27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~v 105 (304)
.+.+|+|.. ..|.+|+..+++.......+...|+++.|+++|.+|++|.. +|.|.|||..+.+.+..+.+ |...|
T Consensus 188 ~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~---~g~v~iwD~~~~k~~~~~~~~h~~rv 263 (484)
T KOG0305|consen 188 ANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTS---DGTVQIWDVKEQKKTRTLRGSHASRV 263 (484)
T ss_pred CCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeec---CCeEEEEehhhccccccccCCcCcee
Confidence 456777754 47999999998876666666889999999999999999999 99999999999999999998 99999
Q ss_pred EEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCC
Q 036585 106 VLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDG 185 (304)
Q Consensus 106 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 185 (304)
-+++|. +..+.+|+.|+.|..+|++..+..... +.+|...|..++|++|+
T Consensus 264 g~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~----------------------------~~~H~qeVCgLkws~d~ 313 (484)
T KOG0305|consen 264 GSLAWN--SSVLSSGSRDGKILNHDVRISQHVVST----------------------------LQGHRQEVCGLKWSPDG 313 (484)
T ss_pred EEEecc--CceEEEecCCCcEEEEEEecchhhhhh----------------------------hhcccceeeeeEECCCC
Confidence 999997 668999999999999999987654431 23688899999999999
Q ss_pred cEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcC-CCcEEEEec--CCCcEEEEecCCCceeeeeeccCCC
Q 036585 186 RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-EGMFVISGS--GDGSVHAWSVRSGKEVASWMSFDTE 262 (304)
Q Consensus 186 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~--~dg~i~v~d~~~~~~~~~~~~~~~~ 262 (304)
+++++|+.|+.+.|||....++...+. .|...|.+++|+| ....||+|+ .|+.|++||..+++.+..+. -...
T Consensus 314 ~~lASGgnDN~~~Iwd~~~~~p~~~~~---~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQ 389 (484)
T KOG0305|consen 314 NQLASGGNDNVVFIWDGLSPEPKFTFT---EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQ 389 (484)
T ss_pred CeeccCCCccceEeccCCCccccEEEe---ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCc
Confidence 999999999999999998888888888 7999999999999 667888875 79999999999999988875 5578
Q ss_pred CceEEeCCCCcEEEEecCc----eEEeccCC-ccccccccCCC
Q 036585 263 PPVIKWAPGSLMFVTGSSE----LSFWIPDL-SKLGAYVGRNR 300 (304)
Q Consensus 263 i~~~~~~~~~~~l~s~~~d----~~iw~~~~-~~~~~~~~~~~ 300 (304)
|.+|.|++..+-|+++... +.||.+.. ..+..+.+|..
T Consensus 390 VcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~ 432 (484)
T KOG0305|consen 390 VCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS 432 (484)
T ss_pred eeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc
Confidence 9999999998766665443 99999954 55667777764
No 91
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.2e-28 Score=217.28 Aligned_cols=224 Identities=14% Similarity=0.193 Sum_probs=179.8
Q ss_pred eEeecc-cCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEcc-CCCeEEEEecCCCCCceEEEEccCceeeee
Q 036585 20 ILQSME-VGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTS-HPTTVIYSSKNGWDESLRLLSLHDNKYSRY 97 (304)
Q Consensus 20 ~i~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~ 97 (304)
.+.+.+ .+.+|++++.||+|++||+.+++.+..+.+|...|.+++|+| ++..|++++. |+.|++||+.+++.+..
T Consensus 537 ~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~---Dg~v~iWd~~~~~~~~~ 613 (793)
T PLN00181 537 GICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSD---DGSVKLWSINQGVSIGT 613 (793)
T ss_pred eEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcC---CCEEEEEECCCCcEEEE
Confidence 355555 478999999999999999999999999999999999999997 7889999998 99999999999988888
Q ss_pred cccccccEEEEEEc-CCCCEEEEcccCCeEEEEeCCccee-eceEEEecc--ceeEecC-CCeEEEecCCCeEEEEec--
Q 036585 98 FKGHHDRVVLLSLC-SSKDCFISGSLDRTVLLWDQRAEKC-QGLLRVQGR--PAAAYDD-QGLVFGYEKGPLDIFSVG-- 170 (304)
Q Consensus 98 ~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~-- 170 (304)
+..+ ..+.++.|+ +++.+|++|+.|+.|++||+++... ...+..+.. ..+.+.+ ...+.+..++.+++|++.
T Consensus 614 ~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~ 692 (793)
T PLN00181 614 IKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMS 692 (793)
T ss_pred EecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCC
Confidence 7744 679999995 5789999999999999999987652 333332222 2344433 334556677888888754
Q ss_pred -------------CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeC----------CCCCCcceEEEEc
Q 036585 171 -------------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK----------PVSRNSTLEASFS 227 (304)
Q Consensus 171 -------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~----------~~~~~~i~~~~~s 227 (304)
+|...+..++|+|++.+|++|+.|+.|++|+.........+... ..+...|.+++|+
T Consensus 693 ~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws 772 (793)
T PLN00181 693 ISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWR 772 (793)
T ss_pred ccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEc
Confidence 45667888999999999999999999999998766554433211 1244569999999
Q ss_pred CCCcEEEEecCCCcEEEEec
Q 036585 228 PEGMFVISGSGDGSVHAWSV 247 (304)
Q Consensus 228 ~~~~~l~~~~~dg~i~v~d~ 247 (304)
|++..|++|+.||.|+||++
T Consensus 773 ~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 773 GQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCCeEEEecCCCcEEEEec
Confidence 99999999999999999996
No 92
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=6.4e-31 Score=193.32 Aligned_cols=222 Identities=19% Similarity=0.349 Sum_probs=196.0
Q ss_pred eeEeecccCcEEEEeeCCCeEEEEecCCcceeeeec-ccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee
Q 036585 19 EILQSMEVGIYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY 97 (304)
Q Consensus 19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~ 97 (304)
-++.|+.|...+|+|+.||.|++|.+.+|.+++.+. .|..+|+|+.|+.|+..+++++. |.++++--+.+|++++.
T Consensus 267 lci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sf---D~tvRiHGlKSGK~LKE 343 (508)
T KOG0275|consen 267 LCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASF---DQTVRIHGLKSGKCLKE 343 (508)
T ss_pred EEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccc---cceEEEeccccchhHHH
Confidence 456788889999999999999999999999999998 79999999999999999999998 99999999999999999
Q ss_pred cccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccc----e---eEecCCCeEEEecCCCeEEEEec
Q 036585 98 FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP----A---AAYDDQGLVFGYEKGPLDIFSVG 170 (304)
Q Consensus 98 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~ 170 (304)
+++|...|....|.++|..+++++.||+|++|+..+..+...++..+.. . +.-+|...++....+.+.+.++.
T Consensus 344 frGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q 423 (508)
T KOG0275|consen 344 FRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ 423 (508)
T ss_pred hcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc
Confidence 9999999999999999999999999999999999999998888764422 1 11244556667777777777665
Q ss_pred CC-----------CCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC
Q 036585 171 GD-----------ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD 239 (304)
Q Consensus 171 ~~-----------~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 239 (304)
+. .+..-+...+|.|.++++.+.|+.++.|...+|+...++. .|...+..++-+|..+.||+-++|
T Consensus 424 GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~---VhEkdvIGl~HHPHqNllAsYsED 500 (508)
T KOG0275|consen 424 GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLP---VHEKDVIGLTHHPHQNLLASYSED 500 (508)
T ss_pred ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeee---cccccccccccCcccchhhhhccc
Confidence 42 3455667899999999999999999999999999999998 688889999999999999999999
Q ss_pred CcEEEEe
Q 036585 240 GSVHAWS 246 (304)
Q Consensus 240 g~i~v~d 246 (304)
|.+++|.
T Consensus 501 gllKLWk 507 (508)
T KOG0275|consen 501 GLLKLWK 507 (508)
T ss_pred chhhhcC
Confidence 9999994
No 93
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.2e-29 Score=179.07 Aligned_cols=234 Identities=14% Similarity=0.185 Sum_probs=187.0
Q ss_pred ccCcEEEEeeCCCeEEEEecCCc---ceeeeecccccceeEEEEcc--CCCeEEEEecCCCCCceEEEEccCcee--eee
Q 036585 25 EVGIYLVTASDDESIRLYDVTAA---TCLKTINSKKYGVDLVCFTS--HPTTVIYSSKNGWDESLRLLSLHDNKY--SRY 97 (304)
Q Consensus 25 ~~~~~l~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~d~~i~vwd~~~~~~--~~~ 97 (304)
-.|++|||++.|++|+|+.++.+ +++.+|.+|.++|..++|.. .|..|++++. ||.|.||.-++++- ...
T Consensus 21 yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsY---DgkVIiWke~~g~w~k~~e 97 (299)
T KOG1332|consen 21 YYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSY---DGKVIIWKEENGRWTKAYE 97 (299)
T ss_pred hhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeec---CceEEEEecCCCchhhhhh
Confidence 35999999999999999998754 56789999999999999987 7999999998 99999999988753 345
Q ss_pred cccccccEEEEEEcCC--CCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCC
Q 036585 98 FKGHHDRVVLLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISD 175 (304)
Q Consensus 98 ~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (304)
...|...|.+++|.|. |-.|++++.||.|.+.+.+....-..-+ ....|.-.
T Consensus 98 ~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~k--------------------------i~~aH~~G 151 (299)
T KOG1332|consen 98 HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSK--------------------------IVFAHEIG 151 (299)
T ss_pred hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchh--------------------------hhhccccc
Confidence 6689999999999984 5589999999999999887651111100 01246778
Q ss_pred ceEEEEecC---C-----------cEEEEeeCCCeEEEEEcCCCcee--EEEEeCCCCCCcceEEEEcCCC----cEEEE
Q 036585 176 ANVVKFSND---G-----------RLMLLTTMEGHIHVLDSFRGTLL--STYNVKPVSRNSTLEASFSPEG----MFVIS 235 (304)
Q Consensus 176 v~~~~~~~~---~-----------~~l~~~~~dg~i~~~d~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~----~~l~~ 235 (304)
|++++|.|. | +.|++|+.|..|+||+..+++.. .++. .|...|..++|.|.- .+||+
T Consensus 152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~---~H~dwVRDVAwaP~~gl~~s~iAS 228 (299)
T KOG1332|consen 152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLE---GHKDWVRDVAWAPSVGLPKSTIAS 228 (299)
T ss_pred cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhh---hcchhhhhhhhccccCCCceeeEE
Confidence 888888885 4 56999999999999999876433 3344 799999999999953 57999
Q ss_pred ecCCCcEEEEecCCC-ce--eeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCc
Q 036585 236 GSGDGSVHAWSVRSG-KE--VASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLS 290 (304)
Q Consensus 236 ~~~dg~i~v~d~~~~-~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~ 290 (304)
++.||++.||..+.. ++ ...+......+..+.||+.|+.|+.++.| +++|.-+.+
T Consensus 229 ~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 229 CSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred ecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence 999999999987532 11 22234466789999999999999988888 999977654
No 94
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.5e-29 Score=191.72 Aligned_cols=233 Identities=20% Similarity=0.265 Sum_probs=197.9
Q ss_pred eeeeecceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEcc
Q 036585 11 KVSLELSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH 90 (304)
Q Consensus 11 ~~~~~~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~ 90 (304)
...+++.-.++..++.|.+|+.|+..|.|++|.+.+|+++..+..|-..|+|+.|+-|+.++++++. ||.|.+|.+.
T Consensus 77 ~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgsk---Dg~V~vW~l~ 153 (476)
T KOG0646|consen 77 YIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSK---DGAVLVWLLT 153 (476)
T ss_pred hcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCC---CccEEEEEEE
Confidence 3445666777888899999999989999999999999999999999999999999999999999999 9999999874
Q ss_pred ---------CceeeeecccccccEEEEEEcCC--CCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEe
Q 036585 91 ---------DNKYSRYFKGHHDRVVLLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGY 159 (304)
Q Consensus 91 ---------~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (304)
+-++.+.+..|+-+|+.+...+. ..++++++.|.++++||+..+..+..+..+
T Consensus 154 ~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp---------------- 217 (476)
T KOG0646|consen 154 DLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP---------------- 217 (476)
T ss_pred eecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC----------------
Confidence 23577889999999999988764 458999999999999999999877766533
Q ss_pred cCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCce-------------eEEEEeCCCCCC--cceEE
Q 036585 160 EKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL-------------LSTYNVKPVSRN--STLEA 224 (304)
Q Consensus 160 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-------------~~~~~~~~~~~~--~i~~~ 224 (304)
..+.+++.+|.+..+++|+.+|.|.+.++.+... ...+....+|.+ .|+|+
T Consensus 218 --------------~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcL 283 (476)
T KOG0646|consen 218 --------------SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCL 283 (476)
T ss_pred --------------CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEE
Confidence 5789999999999999999999999988754321 011222235666 99999
Q ss_pred EEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEE
Q 036585 225 SFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFV 276 (304)
Q Consensus 225 ~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 276 (304)
+++-||..|++|+.||.|.|||+.+.++++++....++|+.+.+.|-.+...
T Consensus 284 ais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~ 335 (476)
T KOG0646|consen 284 AISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGII 335 (476)
T ss_pred EEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccccee
Confidence 9999999999999999999999999999999877889999999977544333
No 95
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.7e-28 Score=179.85 Aligned_cols=269 Identities=19% Similarity=0.227 Sum_probs=195.3
Q ss_pred eecceee---EeecccCcEEEEeeCCCeEEEEecCCccee--eeec--ccccceeEEEEccCCCeEEEEecCCCCCceEE
Q 036585 14 LELSEEI---LQSMEVGIYLVTASDDESIRLYDVTAATCL--KTIN--SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86 (304)
Q Consensus 14 ~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~--~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~v 86 (304)
+++|.+. +.|+.||++|+|++.|++|++|++.+.... +.++ -.-+..+.+.|+||-+-+++.... ..++++
T Consensus 82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~--g~~l~v 159 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKR--GNKLCV 159 (420)
T ss_pred hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEcc--CCEEEE
Confidence 3445544 567889999999999999999998863221 1111 112356789999999887777653 778999
Q ss_pred EEccCc---eeee---------ecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecc--ceeEecC
Q 036585 87 LSLHDN---KYSR---------YFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAYDD 152 (304)
Q Consensus 87 wd~~~~---~~~~---------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~ 152 (304)
|.+... .... .-+.|+-.+..+-...++.++++++.|..|.+|+++ ++.+..+..... ...+.+|
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP 238 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP 238 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC
Confidence 987532 2111 112466677778777888999999999999999998 777766654322 2355667
Q ss_pred CCeEEEe-------------------cCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCC-------Cc
Q 036585 153 QGLVFGY-------------------EKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR-------GT 206 (304)
Q Consensus 153 ~~~~~~~-------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------~~ 206 (304)
+|.++.. -....+++.+.+|.+.|..++|+|+...+++.+.||++++||+.- .+
T Consensus 239 ~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk 318 (420)
T KOG2096|consen 239 DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPK 318 (420)
T ss_pred CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCch
Confidence 7654411 123345667889999999999999999999999999999999741 22
Q ss_pred eeEEEE-eCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeee-eccCCCCceEEeCCCCcEEEEecCc-eE
Q 036585 207 LLSTYN-VKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASW-MSFDTEPPVIKWAPGSLMFVTGSSE-LS 283 (304)
Q Consensus 207 ~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~d-~~ 283 (304)
.+++.. ......+....++++|+|+.||.+. ...+++|..++++....+ ..|...|.+|+|+++|++++++++. ++
T Consensus 319 ~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr~vr 397 (420)
T KOG2096|consen 319 ILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDRYVR 397 (420)
T ss_pred HhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecceeee
Confidence 222221 1111233344799999999888774 457999999998877666 5699999999999999999999988 77
Q ss_pred Eec
Q 036585 284 FWI 286 (304)
Q Consensus 284 iw~ 286 (304)
+..
T Consensus 398 v~~ 400 (420)
T KOG2096|consen 398 VIR 400 (420)
T ss_pred eec
Confidence 764
No 96
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=3.4e-30 Score=191.53 Aligned_cols=246 Identities=16% Similarity=0.272 Sum_probs=192.4
Q ss_pred eeeecceeeEeeccc---C-cEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEE
Q 036585 12 VSLELSEEILQSMEV---G-IYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 87 (304)
Q Consensus 12 ~~~~~~~~~i~~~~~---~-~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vw 87 (304)
-.+.+|.+-+.++.- . ..+++|+.||.|++||+.+.++..+++.|.+.|..+++.. ..+++++. |.+|+.|
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgd---DKtvK~w 134 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGD---DKTVKQW 134 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecC---Ccceeee
Confidence 345777777776643 2 5689999999999999999999999999999999999976 67777777 8888888
Q ss_pred EccC--------------------------------------ceeeeecccccccEEEEEEcCCC-CEEEEcccCCeEEE
Q 036585 88 SLHD--------------------------------------NKYSRYFKGHHDRVVLLSLCSSK-DCFISGSLDRTVLL 128 (304)
Q Consensus 88 d~~~--------------------------------------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i 128 (304)
.++. ..+++.+.--.+.|.++.|+|-. ..|+++..|+.|.+
T Consensus 135 k~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvL 214 (433)
T KOG0268|consen 135 KIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVL 214 (433)
T ss_pred eccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEE
Confidence 7432 11223333334567888888844 47778889999999
Q ss_pred EeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCc-e
Q 036585 129 WDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT-L 207 (304)
Q Consensus 129 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~ 207 (304)
||+++.+++..+... ..-+.++|+|.+-.|++++.|..++.||++..+ +
T Consensus 215 yD~R~~~Pl~KVi~~------------------------------mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p 264 (433)
T KOG0268|consen 215 YDLRQASPLKKVILT------------------------------MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRP 264 (433)
T ss_pred EecccCCccceeeee------------------------------ccccceecCccccceeeccccccceehhhhhhccc
Confidence 999999888766533 244679999988889999999999999998643 3
Q ss_pred eEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeee-ccCCCCceEEeCCCCcEEEEecCc--eEE
Q 036585 208 LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWM-SFDTEPPVIKWAPGSLMFVTGSSE--LSF 284 (304)
Q Consensus 208 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~~~d--~~i 284 (304)
+..+. .|.+.|.++.|||.|+-+++|+.|.+|+||..+.+.....+. ..-..|.++.||.|.+++++||+| +++
T Consensus 265 ~~v~~---dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRl 341 (433)
T KOG0268|consen 265 LNVHK---DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRL 341 (433)
T ss_pred chhhc---ccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceee
Confidence 44444 789999999999999999999999999999998776544431 123468999999999999999999 999
Q ss_pred eccCC-cccccc
Q 036585 285 WIPDL-SKLGAY 295 (304)
Q Consensus 285 w~~~~-~~~~~~ 295 (304)
|.-.. +++..+
T Consensus 342 Wka~Aseklgv~ 353 (433)
T KOG0268|consen 342 WKAKASEKLGVI 353 (433)
T ss_pred eecchhhhcCCC
Confidence 97643 444433
No 97
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=1.2e-27 Score=195.41 Aligned_cols=256 Identities=20% Similarity=0.356 Sum_probs=205.2
Q ss_pred CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEE
Q 036585 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVV 106 (304)
Q Consensus 27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~ 106 (304)
=+.++.|+.+|.+++|++++++.+++++++...|+++.-+|--..++.|.. +|+|.++++..++.+.+++...++|+
T Consensus 172 LNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~---~G~ViifNlK~dkil~sFk~d~g~Vt 248 (910)
T KOG1539|consen 172 LNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE---NGTVIIFNLKFDKILMSFKQDWGRVT 248 (910)
T ss_pred eeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc---CceEEEEEcccCcEEEEEEcccccee
Confidence 467889999999999999999999999999999999999999999999998 99999999999999999994469999
Q ss_pred EEEEcCCCC-EEEEcccCCeEEEEeCCcceeeceEEE-e-----------ccce-e-----------Eec-CCC------
Q 036585 107 LLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRV-Q-----------GRPA-A-----------AYD-DQG------ 154 (304)
Q Consensus 107 ~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~-~-----------~~~~-~-----------~~~-~~~------ 154 (304)
+++|..||+ .+++++..|.+.+||++..+....... + +.+. + .++ ++|
T Consensus 249 slSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR 328 (910)
T KOG1539|consen 249 SLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLR 328 (910)
T ss_pred EEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchhee
Confidence 999999987 566777789999999987665443221 0 0000 0 000 000
Q ss_pred -------------------eEE----------------------------------------------------------
Q 036585 155 -------------------LVF---------------------------------------------------------- 157 (304)
Q Consensus 155 -------------------~~~---------------------------------------------------------- 157 (304)
..+
T Consensus 329 ~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE 408 (910)
T KOG1539|consen 329 SRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENARE 408 (910)
T ss_pred eccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchh
Confidence 000
Q ss_pred ---------------------------------------------------------EecCCCeEEEEec----------
Q 036585 158 ---------------------------------------------------------GYEKGPLDIFSVG---------- 170 (304)
Q Consensus 158 ---------------------------------------------------------~~~~~~~~~~~~~---------- 170 (304)
++..+.+.+++++
T Consensus 409 ~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~ 488 (910)
T KOG1539|consen 409 KEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGD 488 (910)
T ss_pred hhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeeccccc
Confidence 5556666666554
Q ss_pred --CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEe-----------------------------------
Q 036585 171 --GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV----------------------------------- 213 (304)
Q Consensus 171 --~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~----------------------------------- 213 (304)
.|..+|+.++...-++.+++++.+|.+.+||..+...+..+..
T Consensus 489 ~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kv 568 (910)
T KOG1539|consen 489 SPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKV 568 (910)
T ss_pred CccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhh
Confidence 3667888888888888899999999999999876653333211
Q ss_pred ---CCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc---eEEec
Q 036585 214 ---KPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE---LSFWI 286 (304)
Q Consensus 214 ---~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---~~iw~ 286 (304)
..+|.+.|++++|||||++|++++.|++|++||+.++.++..+. -..+.+++.|+|+|.+|||+..| +.+|.
T Consensus 569 vR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 569 VREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred hHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 12588899999999999999999999999999999999988774 56788999999999999999988 67773
No 98
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=5.7e-30 Score=181.50 Aligned_cols=241 Identities=14% Similarity=0.206 Sum_probs=208.4
Q ss_pred eeeeecceeeEe---e---cccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCce
Q 036585 11 KVSLELSEEILQ---S---MEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 84 (304)
Q Consensus 11 ~~~~~~~~~~i~---~---~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i 84 (304)
++.-.+|...+- + .|+|-+|++++.|+.-.+-+-++|.-+-++.+|++.|....++.+....++++. |-+-
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaa---dfta 83 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAA---DFTA 83 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcc---cchh
Confidence 444555655532 3 357999999999999999999999999999999999999999999888889888 9999
Q ss_pred EEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCe
Q 036585 85 RLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPL 164 (304)
Q Consensus 85 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (304)
++||.-+|..+.++. |..-|.+++|+.|.++|++|+.+..+++||++..+....
T Consensus 84 kvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~------------------------- 137 (334)
T KOG0278|consen 84 KVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPK------------------------- 137 (334)
T ss_pred hhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCch-------------------------
Confidence 999999999999997 999999999999999999999999999999986543211
Q ss_pred EEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEE
Q 036585 165 DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHA 244 (304)
Q Consensus 165 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v 244 (304)
.+.+|.+.|..+.|....+.+++++.|++||+||.++++.+.++. ...+|+++.++++|++|.++. .+.|.+
T Consensus 138 ---E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~----~~s~VtSlEvs~dG~ilTia~-gssV~F 209 (334)
T KOG0278|consen 138 ---EISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE----FNSPVTSLEVSQDGRILTIAY-GSSVKF 209 (334)
T ss_pred ---hhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe----cCCCCcceeeccCCCEEEEec-CceeEE
Confidence 123788999999999999999999999999999999999999998 678999999999999887764 567999
Q ss_pred EecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCC
Q 036585 245 WSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDL 289 (304)
Q Consensus 245 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~ 289 (304)
||.++..+++.+. ....|.+...+|+...+++|++| +.-||++.
T Consensus 210 wdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~T 255 (334)
T KOG0278|consen 210 WDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNT 255 (334)
T ss_pred eccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccC
Confidence 9999999988886 44678999999999999999999 55556544
No 99
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.5e-29 Score=189.25 Aligned_cols=246 Identities=16% Similarity=0.277 Sum_probs=205.2
Q ss_pred eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCc---eeeeecccccccEEEEEEcCCCCEEEEcccCCe
Q 036585 49 CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN---KYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRT 125 (304)
Q Consensus 49 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 125 (304)
..+.+..|...|..+.||++|++||+++. |.+..+|++... +..+++.+|..+|..+.|+||.++|++++.|..
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSk---D~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~ 292 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASK---DSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEV 292 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccC---CceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHh
Confidence 34567789999999999999999999999 999999988654 346788899999999999999999999999999
Q ss_pred EEEEeCCcceeeceEEEe---ccceeEecCCC--eEEEecCCCeEEEEecCC---------CCCceEEEEecCCcEEEEe
Q 036585 126 VLLWDQRAEKCQGLLRVQ---GRPAAAYDDQG--LVFGYEKGPLDIFSVGGD---------ISDANVVKFSNDGRLMLLT 191 (304)
Q Consensus 126 i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~ 191 (304)
+++||..++.....+... ...+.+|.|++ .+.+..+..+..|++.+. ...|.++++++||+++++.
T Consensus 293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v 372 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLV 372 (519)
T ss_pred eeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEE
Confidence 999999999888777654 23456788877 566778888999988763 3468899999999999999
Q ss_pred eCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCC--CceEEeC
Q 036585 192 TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTE--PPVIKWA 269 (304)
Q Consensus 192 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~--i~~~~~~ 269 (304)
+.|..|++|+..+........ ...+|++++.|.|++++++.-.+..+++||++..+.+..+.||... +-.-+|.
T Consensus 373 ~~d~~i~l~~~e~~~dr~lis----e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFg 448 (519)
T KOG0293|consen 373 TVDKKIRLYNREARVDRGLIS----EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFG 448 (519)
T ss_pred ecccceeeechhhhhhhcccc----ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccC
Confidence 999999999988766555444 6689999999999999999999999999999988889999888754 3333565
Q ss_pred C-CCcEEEEecCc--eEEeccCCcc-ccccccCCCC
Q 036585 270 P-GSLMFVTGSSE--LSFWIPDLSK-LGAYVGRNRG 301 (304)
Q Consensus 270 ~-~~~~l~s~~~d--~~iw~~~~~~-~~~~~~~~~g 301 (304)
. +..++++||+| ++||+-...+ +..+.||...
T Consensus 449 g~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~ 484 (519)
T KOG0293|consen 449 GGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKT 484 (519)
T ss_pred CCCcceEEecCCCceEEEEEccCCceeEeecCCcce
Confidence 4 45899999999 8899875544 5778887643
No 100
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.97 E-value=1.6e-26 Score=182.90 Aligned_cols=260 Identities=11% Similarity=0.140 Sum_probs=190.2
Q ss_pred CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEE-EecCCCCCceEEEEccCceeeeecccccccE
Q 036585 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIY-SSKNGWDESLRLLSLHDNKYSRYFKGHHDRV 105 (304)
Q Consensus 27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v 105 (304)
++.+++++.|+.+++||+.+++.+..+..+. .+..++|+|+++.+++ +.. ++.|++||..+++....+..+.. +
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~---~~~v~~~d~~~~~~~~~~~~~~~-~ 75 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASD---SDTIQVIDLATGEVIGTLPSGPD-P 75 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECC---CCeEEEEECCCCcEEEeccCCCC-c
Confidence 4678899999999999999999888887665 4678999999998754 444 89999999999887776665443 5
Q ss_pred EEEEEcCCCCEEEE-cccCCeEEEEeCCcceeeceEEEe-ccceeEecCCCeEEEec--CC-CeEEEEecC--------C
Q 036585 106 VLLSLCSSKDCFIS-GSLDRTVLLWDQRAEKCQGLLRVQ-GRPAAAYDDQGLVFGYE--KG-PLDIFSVGG--------D 172 (304)
Q Consensus 106 ~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~--------~ 172 (304)
..+.|+|+++.+++ ++.++.+++||+++.+....+... ....+.+++++..+... ++ .+..++... .
T Consensus 76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~ 155 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV 155 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc
Confidence 67899999987655 456899999999987766655432 23456777777544322 22 233334321 1
Q ss_pred CCCceEEEEecCCcEEEEe-eCCCeEEEEEcCCCceeEEEEeCCC----CCCcceEEEEcCCCcEEEEe-cCCCcEEEEe
Q 036585 173 ISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTLLSTYNVKPV----SRNSTLEASFSPEGMFVISG-SGDGSVHAWS 246 (304)
Q Consensus 173 ~~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~~-~~dg~i~v~d 246 (304)
......++|+|++++++++ ..++.|++||+++++....+..... .......++|+|++++++++ +.++.+.+||
T Consensus 156 ~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d 235 (300)
T TIGR03866 156 DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVD 235 (300)
T ss_pred CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEE
Confidence 2345678999999988655 4689999999999887776652210 11233568899999986554 4567899999
Q ss_pred cCCCceeeeeeccCCCCceEEeCCCCcEEEEecC-c--eEEeccCCccc
Q 036585 247 VRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSS-E--LSFWIPDLSKL 292 (304)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-d--~~iw~~~~~~~ 292 (304)
+++++.+..+. +...+.+++|+|++++|++++. + +++|+.+..+.
T Consensus 236 ~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 236 AKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred CCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 99888766553 4567899999999999987643 3 99999977653
No 101
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.3e-28 Score=188.26 Aligned_cols=235 Identities=17% Similarity=0.189 Sum_probs=198.9
Q ss_pred eeEeecccCcEEEEeeCCCeEEEEecCCccee----ee-------------e-cccccceeEEEEccCCCeEEEEecCCC
Q 036585 19 EILQSMEVGIYLVTASDDESIRLYDVTAATCL----KT-------------I-NSKKYGVDLVCFTSHPTTVIYSSKNGW 80 (304)
Q Consensus 19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~----~~-------------~-~~~~~~v~~~~~~~~~~~l~~~~~~~~ 80 (304)
-.+..++++++.++++.+++|.-|++.+++.. .. - +.|...+.+++.++|+++|++|+.
T Consensus 146 ~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~--- 222 (479)
T KOG0299|consen 146 TSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGR--- 222 (479)
T ss_pred eEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCC---
Confidence 34667889999999999999999998877532 11 1 267788999999999999999998
Q ss_pred CCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEec
Q 036585 81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYE 160 (304)
Q Consensus 81 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (304)
|..|.||+..+.+.++.+++|.+.|.+++|......+++++.|+.+++|+++....+.++-
T Consensus 223 d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly------------------- 283 (479)
T KOG0299|consen 223 DRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY------------------- 283 (479)
T ss_pred CceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh-------------------
Confidence 9999999999999999999999999999999888899999999999999998877665553
Q ss_pred CCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCC
Q 036585 161 KGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG 240 (304)
Q Consensus 161 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 240 (304)
+|++.|..+....-++.+-+|+.|+++++|++... ....+. ++.+.+-|++|-. ..++++|+.||
T Consensus 284 ----------GHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifr---g~~~sidcv~~In-~~HfvsGSdnG 348 (479)
T KOG0299|consen 284 ----------GHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFR---GGEGSIDCVAFIN-DEHFVSGSDNG 348 (479)
T ss_pred ----------CCccceeeechhcccceEEeccccceeEEEecccc-ceeeee---CCCCCeeeEEEec-ccceeeccCCc
Confidence 78889999998888888888899999999999443 333444 5788899999975 45889999999
Q ss_pred cEEEEecCCCceeeeee-cc-----------CCCCceEEeCCCCcEEEEecCc--eEEeccCCc
Q 036585 241 SVHAWSVRSGKEVASWM-SF-----------DTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLS 290 (304)
Q Consensus 241 ~i~v~d~~~~~~~~~~~-~~-----------~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~ 290 (304)
.|.+|++...+++.... .| ...|++++..|...++++|+.+ +++|..+-+
T Consensus 349 ~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 349 SIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred eEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 99999999888876552 12 2378999999999999999998 999988543
No 102
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.97 E-value=2.2e-29 Score=195.03 Aligned_cols=231 Identities=16% Similarity=0.253 Sum_probs=199.0
Q ss_pred eeEeecccCcEEEEeeCCCeEEEEecCCcc--eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee
Q 036585 19 EILQSMEVGIYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR 96 (304)
Q Consensus 19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~ 96 (304)
.....++||+.|++|+.-.++.|||+.... ....+....-..++++.+||.+..+++.. ||.|.|||+.+...++
T Consensus 469 RSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccs---dGnI~vwDLhnq~~Vr 545 (705)
T KOG0639|consen 469 RSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCS---DGNIAVWDLHNQTLVR 545 (705)
T ss_pred eeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeecc---CCcEEEEEcccceeee
Confidence 346678999999999999999999998544 33445444456788999999999999998 9999999999999999
Q ss_pred ecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCc
Q 036585 97 YFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDA 176 (304)
Q Consensus 97 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 176 (304)
.|++|++.+.|+..+++|..|.+|+-|.+||-||+++++...... -.+.|
T Consensus 546 qfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd------------------------------F~SQI 595 (705)
T KOG0639|consen 546 QFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD------------------------------FSSQI 595 (705)
T ss_pred cccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh------------------------------hhhhh
Confidence 999999999999999999999999999999999999987765543 22578
Q ss_pred eEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeee
Q 036585 177 NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASW 256 (304)
Q Consensus 177 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 256 (304)
.++.++|++.++++|-.++.+.+......+..... .|+..|.++.|.+.|+++++.+.|+.+..|.+--|..+...
T Consensus 596 fSLg~cP~~dWlavGMens~vevlh~skp~kyqlh----lheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs 671 (705)
T KOG0639|consen 596 FSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLH----LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS 671 (705)
T ss_pred eecccCCCccceeeecccCcEEEEecCCccceeec----ccccEEEEEEecccCceeeecCchhhhhhccCccccceeec
Confidence 88999999999999999999999887554443333 38899999999999999999999999999999888877776
Q ss_pred eccCCCCceEEeCCCCcEEEEecCc--eEEecc
Q 036585 257 MSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIP 287 (304)
Q Consensus 257 ~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~ 287 (304)
+ ...+|.++..+.|.++++||+.| -.+|.+
T Consensus 672 k-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 672 K-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred c-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 5 45789999999999999999999 667653
No 103
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=6.9e-28 Score=198.67 Aligned_cols=237 Identities=14% Similarity=0.201 Sum_probs=201.7
Q ss_pred eeEeecccCcEEEEeeCCCeEEEEecCCc-ceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee
Q 036585 19 EILQSMEVGIYLVTASDDESIRLYDVTAA-TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY 97 (304)
Q Consensus 19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~ 97 (304)
..+.+.++|++|++++.||.|++|+.... +...++..+...|.+++. ...+|++++. +++|.+|.+.+++.-..
T Consensus 17 t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~---~~tv~~y~fps~~~~~i 91 (933)
T KOG1274|consen 17 TLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSE---QNTVLRYKFPSGEEDTI 91 (933)
T ss_pred EEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeec---cceEEEeeCCCCCccce
Confidence 45788899999999999999999997765 555555556667777766 5669999998 99999999999887767
Q ss_pred cccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCce
Q 036585 98 FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDAN 177 (304)
Q Consensus 98 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 177 (304)
+...+-++.+++|+.+|++++.|+.|-.|++-++........++ +|..+|.
T Consensus 92 L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr-----------------------------gh~apVl 142 (933)
T KOG1274|consen 92 LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR-----------------------------GHDAPVL 142 (933)
T ss_pred eeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeec-----------------------------ccCCcee
Confidence 77778899999999999999999999999999998877666554 7889999
Q ss_pred EEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCC-----CCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCce
Q 036585 178 VVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV-----SRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKE 252 (304)
Q Consensus 178 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-----~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~ 252 (304)
++.|+|++++||+.+.||.|++||+.++....++..... ....+..++|+|++..++....|+.|++|+..+.+.
T Consensus 143 ~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~ 222 (933)
T KOG1274|consen 143 QLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWEL 222 (933)
T ss_pred eeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCcee
Confidence 999999999999999999999999999888777653211 134567899999988888888999999999999888
Q ss_pred eeeee--ccCCCCceEEeCCCCcEEEEecCc--eEEeccCC
Q 036585 253 VASWM--SFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDL 289 (304)
Q Consensus 253 ~~~~~--~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~ 289 (304)
...+. .+...+..+.|+|.|+|||+++.+ |.||+++.
T Consensus 223 ~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 223 QFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred heeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 77773 344558999999999999999999 99999984
No 104
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.7e-29 Score=200.73 Aligned_cols=228 Identities=15% Similarity=0.226 Sum_probs=188.5
Q ss_pred Eeecc-cCcEEEEeeCCCeEEEEecCC---cceeeeecccccceeEEEEccCC-CeEEEEecCCCCCceEEEEccCceee
Q 036585 21 LQSME-VGIYLVTASDDESIRLYDVTA---ATCLKTINSKKYGVDLVCFTSHP-TTVIYSSKNGWDESLRLLSLHDNKYS 95 (304)
Q Consensus 21 i~~~~-~~~~l~~~~~d~~i~vw~~~~---~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~d~~i~vwd~~~~~~~ 95 (304)
|.|.. +.++|||++..|.|.+||+.. .+++..+..|+..+++++|++.. .+|++|+. ||.|++||++..+..
T Consensus 93 VkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQ---Dg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 93 VKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQ---DGTVKCWDLRSKKSK 169 (839)
T ss_pred cccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCC---CceEEEEeeeccccc
Confidence 44442 368999999999999999987 66778899999999999999855 56677777 999999999999999
Q ss_pred eecccccccEEEEEEcC-CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCC
Q 036585 96 RYFKGHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDIS 174 (304)
Q Consensus 96 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (304)
.++.+....|..+.|+| .+.+|+++...|.+++||+|....-.. .+..|.+
T Consensus 170 ~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~----------------------------k~~AH~G 221 (839)
T KOG0269|consen 170 STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK----------------------------KLTAHNG 221 (839)
T ss_pred ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHH----------------------------HhhcccC
Confidence 99998899999999999 677899999999999999987543211 1236889
Q ss_pred CceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcE-EEEec--CCCcEEEEecCCC-
Q 036585 175 DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF-VISGS--GDGSVHAWSVRSG- 250 (304)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~--~dg~i~v~d~~~~- 250 (304)
+|.++.|+|++.+||+|+.|+.|+|||+.+.+....... ....++.+++|-|+..+ ||+++ .|-.|+|||++..
T Consensus 222 pV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI--nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY 299 (839)
T KOG0269|consen 222 PVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI--NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY 299 (839)
T ss_pred ceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEE--eecceeeeeeeccCccchhhhhhccccceEEEEeecccc
Confidence 999999999999999999999999999987655444433 25679999999997765 55554 5778999999764
Q ss_pred ceeeeeeccCCCCceEEeCC-CCcEEEEecCc
Q 036585 251 KEVASWMSFDTEPPVIKWAP-GSLMFVTGSSE 281 (304)
Q Consensus 251 ~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~d 281 (304)
-+..++..|...++.++|.. |-..|.+++.|
T Consensus 300 IP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD 331 (839)
T KOG0269|consen 300 IPYATFLEHTDSVTGIAWDSGDRINLWSCSKD 331 (839)
T ss_pred ccceeeeccCccccceeccCCCceeeEeecCc
Confidence 34677889999999999966 55678888888
No 105
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1e-28 Score=198.85 Aligned_cols=248 Identities=12% Similarity=0.208 Sum_probs=209.9
Q ss_pred ceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEcc---CCCeEEEEecCCCCCceEEEEccC-c
Q 036585 17 SEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTS---HPTTVIYSSKNGWDESLRLLSLHD-N 92 (304)
Q Consensus 17 ~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~~~~d~~i~vwd~~~-~ 92 (304)
.-..+..+|+|++||+|..-|.++||++...+....+..|...|.|+.++. ..++|++++. |..|.|||+.. -
T Consensus 461 G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasr---dRlIHV~Dv~rny 537 (1080)
T KOG1408|consen 461 GFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASR---DRLIHVYDVKRNY 537 (1080)
T ss_pred ceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccC---CceEEEEeccccc
Confidence 445788999999999999999999999999999999999999999999986 3467888888 99999999964 3
Q ss_pred eeeeecccccccEEEEEEcCCC--CEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEec
Q 036585 93 KYSRYFKGHHDRVVLLSLCSSK--DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVG 170 (304)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (304)
.+++++.+|...|+++.|.-+| ..+++++.|+.|.+--.+.......+..+...
T Consensus 538 ~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t------------------------ 593 (1080)
T KOG1408|consen 538 DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQT------------------------ 593 (1080)
T ss_pred chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccc------------------------
Confidence 5778899999999999998876 68999999987765322211111111111000
Q ss_pred CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC
Q 036585 171 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG 250 (304)
Q Consensus 171 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~ 250 (304)
-....+..++..|..+++++++.|..|+|||+.+++..+.|+....+++....+...|.|.||++.+.|.++.++|..++
T Consensus 594 ~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg 673 (1080)
T KOG1408|consen 594 LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG 673 (1080)
T ss_pred cccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc
Confidence 12245778999999999999999999999999999999999988888888999999999999999999999999999999
Q ss_pred ceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCcc
Q 036585 251 KEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSK 291 (304)
Q Consensus 251 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~ 291 (304)
+++.++.+|...|+.+.|.+|.+.|++.+.| |.||.+....
T Consensus 674 EcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~m 716 (1080)
T KOG1408|consen 674 ECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLTM 716 (1080)
T ss_pred hhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchhH
Confidence 9999999999999999999999999999999 7788776543
No 106
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.6e-28 Score=177.88 Aligned_cols=265 Identities=17% Similarity=0.270 Sum_probs=194.0
Q ss_pred ceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee
Q 036585 17 SEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR 96 (304)
Q Consensus 17 ~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~ 96 (304)
+...++|++.|.+||+|+.||.|.|||+.|...-+.+.+|..+|.+++||++|+.|++++. |..|.+||+..|.+++
T Consensus 25 ~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~---D~si~lwDl~~gs~l~ 101 (405)
T KOG1273|consen 25 LAECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSR---DWSIKLWDLLKGSPLK 101 (405)
T ss_pred ccceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecC---CceeEEEeccCCCcee
Confidence 3567899999999999999999999999999988999999999999999999999999999 9999999999999888
Q ss_pred ecccccccEEEEEEcCCC-CEEEEcccCCeEEEEeCCcceeeceEEEecc-------ceeEecCCCe--EEEecCCCeEE
Q 036585 97 YFKGHHDRVVLLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-------PAAAYDDQGL--VFGYEKGPLDI 166 (304)
Q Consensus 97 ~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~~~~~~~~--~~~~~~~~~~~ 166 (304)
.+. ...+|+.+.|+|.. +.+++.-.+..-.+-++..+.. ..+..... ....++..+. +.+...|.+.+
T Consensus 102 rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv 179 (405)
T KOG1273|consen 102 RIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLV 179 (405)
T ss_pred EEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEEecCcceEEE
Confidence 887 67899999999843 3333333333344444433211 11111000 0112444443 33444455555
Q ss_pred EEecC----------CCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCC-------cee--EEEEeCCCCCCcceEEEEc
Q 036585 167 FSVGG----------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG-------TLL--STYNVKPVSRNSTLEASFS 227 (304)
Q Consensus 167 ~~~~~----------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-------~~~--~~~~~~~~~~~~i~~~~~s 227 (304)
++... ....|..+.++..|++|++-+.|..|+.|+++.- ++. ..++- ...+.+-.+++||
T Consensus 180 ~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qD-vVNk~~Wk~ccfs 258 (405)
T KOG1273|consen 180 YDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQD-VVNKLQWKKCCFS 258 (405)
T ss_pred EecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHH-HHhhhhhhheeec
Confidence 54332 1267788999999999999999999999997621 111 11110 0123344578999
Q ss_pred CCCcEEEEecC-CCcEEEEecCCCceeeeeeccC-CCCceEEeCCCCcEEEEecCc-eEEecc
Q 036585 228 PEGMFVISGSG-DGSVHAWSVRSGKEVASWMSFD-TEPPVIKWAPGSLMFVTGSSE-LSFWIP 287 (304)
Q Consensus 228 ~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~s~~~d-~~iw~~ 287 (304)
.+|.|+++++. ...++||.-..|.+++.+.|.. .....+.|+|-...+++-..+ ++||..
T Consensus 259 ~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~~ 321 (405)
T KOG1273|consen 259 GDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASGVVYIWAV 321 (405)
T ss_pred CCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCCceEEEEe
Confidence 99999988863 4579999999999999998776 457789999999999998777 999964
No 107
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=6.8e-28 Score=184.75 Aligned_cols=238 Identities=12% Similarity=0.167 Sum_probs=195.1
Q ss_pred CcEEEEeeC-CCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccE
Q 036585 27 GIYLVTASD-DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRV 105 (304)
Q Consensus 27 ~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v 105 (304)
++|++++.. ...+.+|.+..........--.++|.+++-+|+|.+|+.++. .+.|++|.+.+|..+..+.+|-..|
T Consensus 50 ~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i---~g~lYlWelssG~LL~v~~aHYQ~I 126 (476)
T KOG0646|consen 50 NEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTI---SGNLYLWELSSGILLNVLSAHYQSI 126 (476)
T ss_pred hhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecc---cCcEEEEEeccccHHHHHHhhccce
Confidence 456666654 346889998766555544445568999999999999999987 9999999999999999999999999
Q ss_pred EEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecC-
Q 036585 106 VLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSND- 184 (304)
Q Consensus 106 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 184 (304)
+|+.|+-|+.+|++|+.||.|.+|++..--.. .. +.....+..+..|.-+|+++...+.
T Consensus 127 TcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a--~~------------------~~~~~p~~~f~~HtlsITDl~ig~Gg 186 (476)
T KOG0646|consen 127 TCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA--DN------------------DHSVKPLHIFSDHTLSITDLQIGSGG 186 (476)
T ss_pred eEEEEeCCCcEEEecCCCccEEEEEEEeeccc--cc------------------CCCccceeeeccCcceeEEEEecCCC
Confidence 99999999999999999999999986432110 00 0012234445578889999888765
Q ss_pred -CcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCc------------
Q 036585 185 -GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGK------------ 251 (304)
Q Consensus 185 -~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~------------ 251 (304)
..++++++.|.++++||+..+..+.++. ....+.+++.+|.++.+++|+++|.|.+.++....
T Consensus 187 ~~~rl~TaS~D~t~k~wdlS~g~LLlti~----fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~ 262 (476)
T KOG0646|consen 187 TNARLYTASEDRTIKLWDLSLGVLLLTIT----FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRH 262 (476)
T ss_pred ccceEEEecCCceEEEEEeccceeeEEEe----cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccc
Confidence 4679999999999999999999999987 56889999999999999999999999998875422
Q ss_pred ----eeeeeeccCC--CCceEEeCCCCcEEEEecCc--eEEeccCCcc
Q 036585 252 ----EVASWMSFDT--EPPVIKWAPGSLMFVTGSSE--LSFWIPDLSK 291 (304)
Q Consensus 252 ----~~~~~~~~~~--~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~ 291 (304)
.+..+.+|.+ +|+|++.+-||..|++|+.| +.||++...+
T Consensus 263 ~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 263 EENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred cccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 2455678888 99999999999999999999 9999986544
No 108
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.9e-28 Score=193.18 Aligned_cols=245 Identities=21% Similarity=0.305 Sum_probs=200.1
Q ss_pred ceeeeecceeeEee---cccCcEEEEeeCCCeEEEEecCCc--ceeeeecccccceeEEEE-ccCCCeEEEEecCCCCCc
Q 036585 10 DKVSLELSEEILQS---MEVGIYLVTASDDESIRLYDVTAA--TCLKTINSKKYGVDLVCF-TSHPTTVIYSSKNGWDES 83 (304)
Q Consensus 10 ~~~~~~~~~~~i~~---~~~~~~l~~~~~d~~i~vw~~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~~~~d~~ 83 (304)
...+++.|.+-+.- ..+|+.|+++|.|-+|++|+...+ -+..++..|...|.|++. .++...+++|+- |+.
T Consensus 65 ~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGL---D~~ 141 (735)
T KOG0308|consen 65 YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGL---DRK 141 (735)
T ss_pred hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCC---Ccc
Confidence 34556666655432 345889999999999999999877 577889999999999999 778888888887 999
Q ss_pred eEEEEccCce--ee--------eecc-cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecC
Q 036585 84 LRLLSLHDNK--YS--------RYFK-GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDD 152 (304)
Q Consensus 84 i~vwd~~~~~--~~--------~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 152 (304)
|.+||++++. .+ ..+. ++..+|++++.++.+..+++|+..+.+++||.++.+.+..++
T Consensus 142 IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr----------- 210 (735)
T KOG0308|consen 142 IFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR----------- 210 (735)
T ss_pred EEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeee-----------
Confidence 9999999772 22 2333 788899999999999999999999999999999987765554
Q ss_pred CCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcE
Q 036585 153 QGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF 232 (304)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 232 (304)
+|...|..+..++||..+++++.||+|++||+...+++.++. .|...+.++..+|+-.+
T Consensus 211 ------------------GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~---vH~e~VWaL~~~~sf~~ 269 (735)
T KOG0308|consen 211 ------------------GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI---VHKEGVWALQSSPSFTH 269 (735)
T ss_pred ------------------ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE---eccCceEEEeeCCCcce
Confidence 789999999999999999999999999999999999999998 68888999999999999
Q ss_pred EEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCc--EEEEecCceEEeccCC
Q 036585 233 VISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSL--MFVTGSSELSFWIPDL 289 (304)
Q Consensus 233 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s~~~d~~iw~~~~ 289 (304)
+++|+.||.|+.-|+++......+-....+|..+..+...+ +++|...+|+=|....
T Consensus 270 vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 270 VYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred EEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcc
Confidence 99999999999999998644333434556777777764332 4444444477775543
No 109
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.3e-26 Score=160.51 Aligned_cols=240 Identities=15% Similarity=0.222 Sum_probs=189.8
Q ss_pred eeEeecccCcEEEEeeCCCeEEEEecCC------c-----c----eeeeecccccceeEEEEccCCCeEEEEecCCCCCc
Q 036585 19 EILQSMEVGIYLVTASDDESIRLYDVTA------A-----T----CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES 83 (304)
Q Consensus 19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~------~-----~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~ 83 (304)
..+.|.|.|.+.++|+...++||--... + + ....-+.|.+.|+|.+|+|+|..+++|+. |.+
T Consensus 36 rav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn---dk~ 112 (350)
T KOG0641|consen 36 RAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN---DKT 112 (350)
T ss_pred eeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC---Cce
Confidence 4588999999999999999999865431 1 0 11223468899999999999999999998 999
Q ss_pred eEEEEccCcee-----eeecccccccEEEEEEcCC----CCEEEEcc-cCCeEEEEeCCcceeeceEEEeccceeEecCC
Q 036585 84 LRLLSLHDNKY-----SRYFKGHHDRVVLLSLCSS----KDCFISGS-LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQ 153 (304)
Q Consensus 84 i~vwd~~~~~~-----~~~~~~~~~~v~~~~~~~~----~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 153 (304)
|++...+...+ -..+.-|.+.|..++|..+ +..|++++ .|..|++-|..+++....+.
T Consensus 113 ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s------------ 180 (350)
T KOG0641|consen 113 IKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS------------ 180 (350)
T ss_pred EEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec------------
Confidence 99987764322 2345668999999999743 44677655 46677777777776654443
Q ss_pred CeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCC----CCCCcceEEEEcCC
Q 036585 154 GLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP----VSRNSTLEASFSPE 229 (304)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~----~~~~~i~~~~~s~~ 229 (304)
+|.+-|.++ ++=+|-.+++|+.|.+|++||++-..++.++.... .....|.+++..|.
T Consensus 181 -----------------ghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdps 242 (350)
T KOG0641|consen 181 -----------------GHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPS 242 (350)
T ss_pred -----------------CCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCC
Confidence 566666544 34467889999999999999999888777765221 12357899999999
Q ss_pred CcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCcc
Q 036585 230 GMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSK 291 (304)
Q Consensus 230 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~ 291 (304)
|++|++|-.|....+||++.++.++.+..|...|.++.|+|...++.+++.| |++-++....
T Consensus 243 grll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdl 306 (350)
T KOG0641|consen 243 GRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDL 306 (350)
T ss_pred cceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccch
Confidence 9999999999999999999999999999999999999999999999999999 7877776544
No 110
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=4.5e-27 Score=188.45 Aligned_cols=233 Identities=18% Similarity=0.229 Sum_probs=196.5
Q ss_pred eeeecceeeEee----c-ccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEE
Q 036585 12 VSLELSEEILQS----M-EVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86 (304)
Q Consensus 12 ~~~~~~~~~i~~----~-~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~v 86 (304)
..++++.+.+.. . .++-.+++|+.|.++.+|...+..++..+.+|...|.+++...++. +++|+- |.++++
T Consensus 51 ~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSW---D~Takv 126 (745)
T KOG0301|consen 51 HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSW---DSTAKV 126 (745)
T ss_pred eecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEeccc---ccceEE
Confidence 345556666554 2 2345699999999999999999999999999999999999888887 888886 999999
Q ss_pred EEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEE
Q 036585 87 LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDI 166 (304)
Q Consensus 87 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (304)
|.. +++...+++|+..|+++..-|++ .+++|+.|.+|++|.- ++..+++.
T Consensus 127 W~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~------------------------- 176 (745)
T KOG0301|consen 127 WRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFS------------------------- 176 (745)
T ss_pred ecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhc-------------------------
Confidence 976 45666799999999999999988 8999999999999985 55555554
Q ss_pred EEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEe
Q 036585 167 FSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWS 246 (304)
Q Consensus 167 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d 246 (304)
+|...|+.+++-+++. |++++.||.|++|++ +++.+.++. +|...+.++...+++..++++++|++++||+
T Consensus 177 ----gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~---ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~ 247 (745)
T KOG0301|consen 177 ----GHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMH---GHTNFVYSISMALSDGLIVSTGEDRTLRIWK 247 (745)
T ss_pred ----cchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeee---ccceEEEEEEecCCCCeEEEecCCceEEEee
Confidence 7889999999998765 889999999999998 788888887 7999999999888889999999999999998
Q ss_pred cCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc-eEEeccCC
Q 036585 247 VRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE-LSFWIPDL 289 (304)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~~~ 289 (304)
.. ++.+.+.-....|+++.+-++|..++.+|+. ++||..+-
T Consensus 248 ~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 248 KD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred cC--ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence 65 7777776555689999999998876666555 88887663
No 111
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=1.3e-27 Score=180.59 Aligned_cols=221 Identities=21% Similarity=0.308 Sum_probs=180.1
Q ss_pred eeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee
Q 036585 18 EEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY 97 (304)
Q Consensus 18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~ 97 (304)
...+.+-++++++++++.|+.+++|++...+...++.+|++.|+++.|......+++++. |.+|++||+....+.++
T Consensus 222 it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~---DRtiK~WDl~k~~C~kt 298 (459)
T KOG0288|consen 222 ITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSA---DRTIKLWDLQKAYCSKT 298 (459)
T ss_pred cceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccc---cchhhhhhhhhhheecc
Confidence 445677788999999999999999999999999999999999999999988888999988 99999999999887776
Q ss_pred cccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccc-eeEecCCC--eEEEecCCCeEEEEecC---
Q 036585 98 FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP-AAAYDDQG--LVFGYEKGPLDIFSVGG--- 171 (304)
Q Consensus 98 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~--- 171 (304)
+. ....+..+..+ ...+++|-.|++|++||.++..........+.. .+..+.++ .+....+..+.++++..
T Consensus 299 ~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI 375 (459)
T KOG0288|consen 299 VL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI 375 (459)
T ss_pred cc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccE
Confidence 65 33445555554 557889999999999999999888877766533 33444444 33344555666665543
Q ss_pred ----------CCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCc
Q 036585 172 ----------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGS 241 (304)
Q Consensus 172 ----------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 241 (304)
.....+.+.|||++.|+++|+.||.|+||++.++++...+.... ....|++++|+|.|.+|++++.++.
T Consensus 376 ~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~-s~~aI~s~~W~~sG~~Llsadk~~~ 454 (459)
T KOG0288|consen 376 RQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLST-SNAAITSLSWNPSGSGLLSADKQKA 454 (459)
T ss_pred EEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCC-CCcceEEEEEcCCCchhhcccCCcc
Confidence 22457889999999999999999999999999999998888532 2237999999999999999999999
Q ss_pred EEEE
Q 036585 242 VHAW 245 (304)
Q Consensus 242 i~v~ 245 (304)
+.+|
T Consensus 455 v~lW 458 (459)
T KOG0288|consen 455 VTLW 458 (459)
T ss_pred eEec
Confidence 9998
No 112
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=7.7e-29 Score=199.39 Aligned_cols=221 Identities=19% Similarity=0.372 Sum_probs=195.6
Q ss_pred CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEE
Q 036585 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVV 106 (304)
Q Consensus 27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~ 106 (304)
+.+++....+-.+++||.+. +..|...+.++..-..++.+++|+. |..+.+|.+.....+..+.+|..+|.
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~---~~k~~L~~i~kp~~i~S~~~hespIe 74 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGE---DEKVNLWAIGKPNAITSLTGHESPIE 74 (825)
T ss_pred ccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCC---ceeeccccccCCchhheeeccCCcce
Confidence 34455555566678888643 3457777888887667788888887 99999999988877888999999999
Q ss_pred EEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCc
Q 036585 107 LLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGR 186 (304)
Q Consensus 107 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 186 (304)
++.|++...+|++|+.+|+|++||++..+.++.+. +|...+..+.|+|-+.
T Consensus 75 Sl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLt-----------------------------gh~~~~~sv~f~P~~~ 125 (825)
T KOG0267|consen 75 SLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLT-----------------------------GHLLNITSVDFHPYGE 125 (825)
T ss_pred eeecCcchhhhcccccCCceeeeehhhhhhhhhhh-----------------------------ccccCcceeeeccceE
Confidence 99999999999999999999999999887766553 6778899999999999
Q ss_pred EEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceE
Q 036585 187 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVI 266 (304)
Q Consensus 187 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~ 266 (304)
+++.|+.|+.+++||.+...+...+. +|...+..+.|+|+|++++.+++|..++|||+..|+....|..|.+.+..+
T Consensus 126 ~~a~gStdtd~~iwD~Rk~Gc~~~~~---s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sl 202 (825)
T KOG0267|consen 126 FFASGSTDTDLKIWDIRKKGCSHTYK---SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSL 202 (825)
T ss_pred EeccccccccceehhhhccCceeeec---CCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccccccccccc
Confidence 99999999999999999888888888 688889999999999999999999999999999999999999999999999
Q ss_pred EeCCCCcEEEEecCc--eEEeccC
Q 036585 267 KWAPGSLMFVTGSSE--LSFWIPD 288 (304)
Q Consensus 267 ~~~~~~~~l~s~~~d--~~iw~~~ 288 (304)
.|+|..-++++|+.| +++|+++
T Consensus 203 e~hp~e~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 203 EFHPLEVLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred ccCchhhhhccCCCCceeeeeccc
Confidence 999999999999999 9999988
No 113
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.3e-27 Score=192.26 Aligned_cols=244 Identities=20% Similarity=0.294 Sum_probs=189.3
Q ss_pred eeeeecceeeEeecccCcEEEEeeCCCeEEEEecCCcc----eeeeeccc---ccceeEEEEcc-CCCeEEEEecCCCCC
Q 036585 11 KVSLELSEEILQSMEVGIYLVTASDDESIRLYDVTAAT----CLKTINSK---KYGVDLVCFTS-HPTTVIYSSKNGWDE 82 (304)
Q Consensus 11 ~~~~~~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~----~~~~~~~~---~~~v~~~~~~~-~~~~l~~~~~~~~d~ 82 (304)
...++.+..+|...++-..++.++.. .++||.+.... +....... ...+..+.|.. +.++|++++. .|
T Consensus 35 ~~~~k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~---nG 110 (839)
T KOG0269|consen 35 NCKLKAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCST---NG 110 (839)
T ss_pred eeecccccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecC---CC
Confidence 34467788889999998888888864 68888776432 21111111 12455677775 4567888887 99
Q ss_pred ceEEEEccC---ceeeeecccccccEEEEEEcC-CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEE
Q 036585 83 SLRLLSLHD---NKYSRYFKGHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFG 158 (304)
Q Consensus 83 ~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (304)
.|.+||+.. .+.+..|..|...+.++.|++ ...+|++|++||+|++||++..+....+.
T Consensus 111 ~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~----------------- 173 (839)
T KOG0269|consen 111 VISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR----------------- 173 (839)
T ss_pred cEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc-----------------
Confidence 999999987 567778999999999999998 55689999999999999999888776665
Q ss_pred ecCCCeEEEEecCCCCCceEEEEec-CCcEEEEeeCCCeEEEEEcCCCc-eeEEEEeCCCCCCcceEEEEcCCCcEEEEe
Q 036585 159 YEKGPLDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGT-LLSTYNVKPVSRNSTLEASFSPEGMFVISG 236 (304)
Q Consensus 159 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 236 (304)
+....|+.++|+| .+.+|+++...|.+++||++... +...+. .|.++|.++.|+|++.+||+|
T Consensus 174 ------------~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~---AH~GpV~c~nwhPnr~~lATG 238 (839)
T KOG0269|consen 174 ------------SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLT---AHNGPVLCLNWHPNREWLATG 238 (839)
T ss_pred ------------ccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhh---cccCceEEEeecCCCceeeec
Confidence 2345789999999 46789999999999999998653 344455 799999999999999999999
Q ss_pred cCCCcEEEEecCCCceeeee-eccCCCCceEEeCCCCc-EEEEecCc----eEEeccCCc
Q 036585 237 SGDGSVHAWSVRSGKEVASW-MSFDTEPPVIKWAPGSL-MFVTGSSE----LSFWIPDLS 290 (304)
Q Consensus 237 ~~dg~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~-~l~s~~~d----~~iw~~~~~ 290 (304)
+.|+.|+|||+.+.+..... .....++.+++|-|+.+ +|++++.- |+||++...
T Consensus 239 GRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP 298 (839)
T KOG0269|consen 239 GRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP 298 (839)
T ss_pred CCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc
Confidence 99999999999865543222 22457899999999875 56666543 899988654
No 114
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.9e-25 Score=162.05 Aligned_cols=247 Identities=15% Similarity=0.218 Sum_probs=200.2
Q ss_pred ceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEccc--CCe
Q 036585 48 TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSL--DRT 125 (304)
Q Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~ 125 (304)
++.+.+......|.++.|+++|..+++++. |.++++||..++++++++..+...+..+.|......++.++. |.+
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~---dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~t 81 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSE---DDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDT 81 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecC---CCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCc
Confidence 344455555678999999999999999888 999999999999999999888888999999877777777765 889
Q ss_pred EEEEeCCcceeeceEEEeccce--eEecCC--CeEEEecCCCeEEEEecCCC-------CCceEEEEecCCcEEEEeeCC
Q 036585 126 VLLWDQRAEKCQGLLRVQGRPA--AAYDDQ--GLVFGYEKGPLDIFSVGGDI-------SDANVVKFSNDGRLMLLTTME 194 (304)
Q Consensus 126 i~iwd~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~d 194 (304)
|+..++.+.+.++.+..+...+ +..+|. ..+-+..++.+++|+++.+. ..-...+|+|+|-++|++...
T Consensus 82 IryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGS 161 (311)
T ss_pred eEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCC
Confidence 9999999999999998776654 344444 35556778899999998533 233467999999999999988
Q ss_pred CeEEEEEcCCC--ceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCC---ceEEeC
Q 036585 195 GHIHVLDSFRG--TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEP---PVIKWA 269 (304)
Q Consensus 195 g~i~~~d~~~~--~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i---~~~~~~ 269 (304)
..|++||++.- .+..++..........+.+.|||||++|+.+...+.+++.|.-+|..+..+..+...- -...|.
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft 241 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFT 241 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEEC
Confidence 89999999863 4556666544456788999999999999999999999999999999988887665443 577899
Q ss_pred CCCcEEEEecCc--eEEeccCCc-ccccccc
Q 036585 270 PGSLMFVTGSSE--LSFWIPDLS-KLGAYVG 297 (304)
Q Consensus 270 ~~~~~l~s~~~d--~~iw~~~~~-~~~~~~~ 297 (304)
||++++++|+.| +.+|+.+.. ++..+.+
T Consensus 242 Pds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 242 PDSKFVLSGSDDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred CCCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence 999999999998 888988553 3444444
No 115
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=1.1e-27 Score=185.72 Aligned_cols=230 Identities=13% Similarity=0.226 Sum_probs=191.3
Q ss_pred EeecccCcEEEEeeCCCeEEEEecCCc---ceeeeecc--cccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceee
Q 036585 21 LQSMEVGIYLVTASDDESIRLYDVTAA---TCLKTINS--KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYS 95 (304)
Q Consensus 21 i~~~~~~~~l~~~~~d~~i~vw~~~~~---~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~ 95 (304)
+..+...++++||+. |.|+|||+... .++..+.. ....+.++.+.||++.|++|+. -.++.|||+....+.
T Consensus 425 vtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGe---astlsiWDLAapTpr 500 (705)
T KOG0639|consen 425 VTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGE---ASTLSIWDLAAPTPR 500 (705)
T ss_pred EEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccc---cceeeeeeccCCCcc
Confidence 455667889999986 67999998743 23333332 3457889999999999999998 889999999876543
Q ss_pred e--ecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCC
Q 036585 96 R--YFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDI 173 (304)
Q Consensus 96 ~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (304)
. .+.......++++.+||.+..+++..||.|.|||+.+...++.+. +|.
T Consensus 501 ikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq-----------------------------Ght 551 (705)
T KOG0639|consen 501 IKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ-----------------------------GHT 551 (705)
T ss_pred hhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc-----------------------------CCC
Confidence 2 233233467889999999999999999999999999887766664 889
Q ss_pred CCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCcee
Q 036585 174 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEV 253 (304)
Q Consensus 174 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~ 253 (304)
..+.||.+++||..|.+|+-|.+|+.||+++++.+.... ....|.++.++|++.+|+.|.+++.+.|..... ...
T Consensus 552 DGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd----F~SQIfSLg~cP~~dWlavGMens~vevlh~sk-p~k 626 (705)
T KOG0639|consen 552 DGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD----FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK-PEK 626 (705)
T ss_pred CCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh----hhhhheecccCCCccceeeecccCcEEEEecCC-ccc
Confidence 999999999999999999999999999999998877765 567899999999999999999999999988643 445
Q ss_pred eeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccC
Q 036585 254 ASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPD 288 (304)
Q Consensus 254 ~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~ 288 (304)
..+..|...|.++.|.+.|+++++.+.| +..|...
T Consensus 627 yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtP 663 (705)
T KOG0639|consen 627 YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 663 (705)
T ss_pred eeecccccEEEEEEecccCceeeecCchhhhhhccCc
Confidence 6677899999999999999999999999 8888653
No 116
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.95 E-value=1.3e-26 Score=173.50 Aligned_cols=233 Identities=16% Similarity=0.284 Sum_probs=179.8
Q ss_pred Eeeccc--CcEEEEeeCCCeEEEEecCC----------------cceeeeecccccceeEEEEccCCC-eEEEEecCCCC
Q 036585 21 LQSMEV--GIYLVTASDDESIRLYDVTA----------------ATCLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGWD 81 (304)
Q Consensus 21 i~~~~~--~~~l~~~~~d~~i~vw~~~~----------------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~d 81 (304)
+...+. ..+.++-+..|.|.||++.. .+++.++.+|...-+.++|||-.. .|++|.. -
T Consensus 157 vr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc---~ 233 (440)
T KOG0302|consen 157 VRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDC---V 233 (440)
T ss_pred eeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCcc---c
Confidence 444444 35677778899999999742 356788899999999999999443 4777777 8
Q ss_pred CceEEEEccCceee---eecccccccEEEEEEcCC-CCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEE
Q 036585 82 ESLRLLSLHDNKYS---RYFKGHHDRVVLLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVF 157 (304)
Q Consensus 82 ~~i~vwd~~~~~~~---~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (304)
+.|++|...++.-. ..+.+|+..|..++|+|. ...|++|+.||.|+|||+|.+.....+..
T Consensus 234 ~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~--------------- 298 (440)
T KOG0302|consen 234 KGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST--------------- 298 (440)
T ss_pred cceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe---------------
Confidence 89999999887532 346679999999999995 45899999999999999998854433321
Q ss_pred EecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCC---CceeEEEEeCCCCCCcceEEEEcC-CCcEE
Q 036585 158 GYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR---GTLLSTYNVKPVSRNSTLEASFSP-EGMFV 233 (304)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~---~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l 233 (304)
+.|.+.|+.+.|+....+|++|+.||+++|||+++ ++++..+. .|..+|+++.|+| +...|
T Consensus 299 ------------kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk---~Hk~pItsieW~p~e~s~i 363 (440)
T KOG0302|consen 299 ------------KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFK---YHKAPITSIEWHPHEDSVI 363 (440)
T ss_pred ------------eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEE---eccCCeeEEEeccccCceE
Confidence 25788999999999888999999999999999975 56677777 6999999999999 45678
Q ss_pred EEecCCCcEEEEecCCCce----------------eeeeecc--CCCCceEEeCCCC-cEEEEecCc-eEEec
Q 036585 234 ISGSGDGSVHAWSVRSGKE----------------VASWMSF--DTEPPVIKWAPGS-LMFVTGSSE-LSFWI 286 (304)
Q Consensus 234 ~~~~~dg~i~v~d~~~~~~----------------~~~~~~~--~~~i~~~~~~~~~-~~l~s~~~d-~~iw~ 286 (304)
++++.|..|.+||+.--.- .+-+--| ...+..+.|+++- .++++.+.| +.||.
T Consensus 364 aasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfk 436 (440)
T KOG0302|consen 364 AASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFK 436 (440)
T ss_pred EeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEE
Confidence 8888999999999853110 0111123 3457889999864 366666666 77764
No 117
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.4e-25 Score=163.83 Aligned_cols=256 Identities=12% Similarity=0.196 Sum_probs=188.5
Q ss_pred cceee---EeecccCcEEEEeeCCCeEEEEecCC----cceeeeecccccceeEEEEcc--CCCeEEEEecCCCCCceEE
Q 036585 16 LSEEI---LQSMEVGIYLVTASDDESIRLYDVTA----ATCLKTINSKKYGVDLVCFTS--HPTTVIYSSKNGWDESLRL 86 (304)
Q Consensus 16 ~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~----~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~d~~i~v 86 (304)
+|.+. +.+...|+++|+++.|++++|||.++ ..+....+.|.+.|..+.|.+ -|+.+++++. |+++.|
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~---Drtv~i 87 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSY---DRTVSI 87 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEec---CCceee
Confidence 44444 45556799999999999999999653 356677889999999999976 4788999998 999999
Q ss_pred EEccCc---------eeeeecccccccEEEEEEcC--CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCe
Q 036585 87 LSLHDN---------KYSRYFKGHHDRVVLLSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGL 155 (304)
Q Consensus 87 wd~~~~---------~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (304)
|.-... ....++......|+.+.|.| -|-.+++++.||.+|||+.-....+.............+|
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~p--- 164 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDP--- 164 (361)
T ss_pred eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCC---
Confidence 976321 12345566678999999998 4668999999999999987655443332221111111111
Q ss_pred EEEecCCCeEEEEecCCCCCceEEEEecC---CcEEEEeeCC-----CeEEEEEcCCCc-eeEEEEeCCCCCCcceEEEE
Q 036585 156 VFGYEKGPLDIFSVGGDISDANVVKFSND---GRLMLLTTME-----GHIHVLDSFRGT-LLSTYNVKPVSRNSTLEASF 226 (304)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d-----g~i~~~d~~~~~-~~~~~~~~~~~~~~i~~~~~ 226 (304)
...+..+..|+.|+|. ..+|++|+.+ +.++||....+. ........+.+..+|+.++|
T Consensus 165 -------------p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~w 231 (361)
T KOG2445|consen 165 -------------PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISW 231 (361)
T ss_pred -------------cccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeee
Confidence 1135567788999884 4678888876 578888765432 33333333479999999999
Q ss_pred cCC----CcEEEEecCCCcEEEEecCCC--------------------ceeeeeeccCCCCceEEeCCCCcEEEEecCc-
Q 036585 227 SPE----GMFVISGSGDGSVHAWSVRSG--------------------KEVASWMSFDTEPPVIKWAPGSLMFVTGSSE- 281 (304)
Q Consensus 227 s~~----~~~l~~~~~dg~i~v~d~~~~--------------------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d- 281 (304)
.|+ -..||+++.|| |+||.++.. +.+..+..|.+.|..+.|+-.|..|++.+.|
T Consensus 232 APn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG 310 (361)
T KOG2445|consen 232 APNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDG 310 (361)
T ss_pred ccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCc
Confidence 995 35799999999 999998731 1355568899999999999999999999999
Q ss_pred -eEEeccCCcc
Q 036585 282 -LSFWIPDLSK 291 (304)
Q Consensus 282 -~~iw~~~~~~ 291 (304)
+|+|.-+...
T Consensus 311 ~VRLWkany~n 321 (361)
T KOG2445|consen 311 CVRLWKANYNN 321 (361)
T ss_pred eeeehhhhhhh
Confidence 9999765543
No 118
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=1.1e-26 Score=168.82 Aligned_cols=193 Identities=19% Similarity=0.305 Sum_probs=156.6
Q ss_pred CcEEEEeeCCCeEEEEecCCcce---------------eeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccC
Q 036585 27 GIYLVTASDDESIRLYDVTAATC---------------LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD 91 (304)
Q Consensus 27 ~~~l~~~~~d~~i~vw~~~~~~~---------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~ 91 (304)
|+|+++|+.||.|.|||++.... ...-.+|+..|..+.|-|-..-+++.++ +|.+++|||.++
T Consensus 56 grymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssS--FDhtlKVWDtnT 133 (397)
T KOG4283|consen 56 GRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSS--FDHTLKVWDTNT 133 (397)
T ss_pred ceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeeccc--ccceEEEeeccc
Confidence 89999999999999999975321 0112368889999999997766665554 399999999999
Q ss_pred ceeeeecccccccEEEEEEcCC---CCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEE
Q 036585 92 NKYSRYFKGHHDRVVLLSLCSS---KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFS 168 (304)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (304)
.+....|+ ..+.|++-+++|- -.++++|..+-.|++-|+.++.....+.
T Consensus 134 lQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls--------------------------- 185 (397)
T KOG4283|consen 134 LQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS--------------------------- 185 (397)
T ss_pred ceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec---------------------------
Confidence 98888777 6788999999983 3367788888999999999998876664
Q ss_pred ecCCCCCceEEEEecCCcE-EEEeeCCCeEEEEEcCCC-ceeEE-----------EEeCCCCCCcceEEEEcCCCcEEEE
Q 036585 169 VGGDISDANVVKFSNDGRL-MLLTTMEGHIHVLDSFRG-TLLST-----------YNVKPVSRNSTLEASFSPEGMFVIS 235 (304)
Q Consensus 169 ~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~~d~~~~-~~~~~-----------~~~~~~~~~~i~~~~~s~~~~~l~~ 235 (304)
+|.+.|.++.|+|...+ |++|+.||.|++||++.. .+... .+..+.|.+.+..++|+.++.++++
T Consensus 186 --GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~ 263 (397)
T KOG4283|consen 186 --GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLAS 263 (397)
T ss_pred --cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhh
Confidence 88999999999998776 667899999999999754 22222 2223467888999999999999999
Q ss_pred ecCCCcEEEEecCCCc
Q 036585 236 GSGDGSVHAWSVRSGK 251 (304)
Q Consensus 236 ~~~dg~i~v~d~~~~~ 251 (304)
++.|..+++|+..+|+
T Consensus 264 ~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 264 CGTDDRIRVWNMESGR 279 (397)
T ss_pred ccCccceEEeecccCc
Confidence 9999999999998765
No 119
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=7.6e-28 Score=179.15 Aligned_cols=232 Identities=16% Similarity=0.219 Sum_probs=183.9
Q ss_pred eeeecccccceeEEEEccCC-CeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEE
Q 036585 50 LKTINSKKYGVDLVCFTSHP-TTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLL 128 (304)
Q Consensus 50 ~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 128 (304)
+..+.+|..+|.|++=+|.. ..+++|+. ||.|++||+.+.++...++.|.+.|..+++.. ..+++++.|.+|+.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~---DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSC---DGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQ 133 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhcccc---CceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceee
Confidence 45678999999999999987 78899998 99999999999999999999999999999986 57899999999999
Q ss_pred EeCCcceeeceEEEeccc-eeEecCCCeEEEecCCCeEEEEecC---------CCCCceEEEEecCCc-EEEEeeCCCeE
Q 036585 129 WDQRAEKCQGLLRVQGRP-AAAYDDQGLVFGYEKGPLDIFSVGG---------DISDANVVKFSNDGR-LMLLTTMEGHI 197 (304)
Q Consensus 129 wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~-~l~~~~~dg~i 197 (304)
|-++.. ...++...... -+.-......+......+.+|+... ....+.++.|+|... .|+++..|+.|
T Consensus 134 wk~~~~-p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsI 212 (433)
T KOG0268|consen 134 WKIDGP-PLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSI 212 (433)
T ss_pred eeccCC-cceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCce
Confidence 997753 33333221111 1111122233334444566776542 335678899999764 56667799999
Q ss_pred EEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC-ceeeeeeccCCCCceEEeCCCCcEEE
Q 036585 198 HVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG-KEVASWMSFDTEPPVIKWAPGSLMFV 276 (304)
Q Consensus 198 ~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~ 276 (304)
.+||+++++++.... ....-+.++|+|.+--+.+|++|..++.||++.. +++....+|.+.|.++.|||.|+-++
T Consensus 213 vLyD~R~~~Pl~KVi----~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efv 288 (433)
T KOG0268|consen 213 VLYDLRQASPLKKVI----LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFV 288 (433)
T ss_pred EEEecccCCccceee----eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhc
Confidence 999999999998887 4556677999997777889999999999999875 45777899999999999999999999
Q ss_pred EecCc--eEEeccCCcc
Q 036585 277 TGSSE--LSFWIPDLSK 291 (304)
Q Consensus 277 s~~~d--~~iw~~~~~~ 291 (304)
+||.| |+||..+-..
T Consensus 289 sgsyDksIRIf~~~~~~ 305 (433)
T KOG0268|consen 289 SGSYDKSIRIFPVNHGH 305 (433)
T ss_pred cccccceEEEeecCCCc
Confidence 99999 9999876543
No 120
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=1.3e-26 Score=185.85 Aligned_cols=237 Identities=19% Similarity=0.306 Sum_probs=199.2
Q ss_pred cceeeeecceeeEee--cccCcEEEEeeCCCeEEEEecCCccee--eeecccccceeE-EEEcc-CCCeEEEEecCCCCC
Q 036585 9 EDKVSLELSEEILQS--MEVGIYLVTASDDESIRLYDVTAATCL--KTINSKKYGVDL-VCFTS-HPTTVIYSSKNGWDE 82 (304)
Q Consensus 9 ~~~~~~~~~~~~i~~--~~~~~~l~~~~~d~~i~vw~~~~~~~~--~~~~~~~~~v~~-~~~~~-~~~~l~~~~~~~~d~ 82 (304)
+....+++|..-++. .-++-.++++|.||++++|+-...+.+ ..+.+|.+-+.+ +++.+ ++-.+++|+. |.
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~---D~ 81 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGM---DT 81 (745)
T ss_pred eeEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecc---cc
Confidence 345567777765544 334668999999999999997655443 446677777766 78875 4446888888 99
Q ss_pred ceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCC
Q 036585 83 SLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKG 162 (304)
Q Consensus 83 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (304)
+|.+|...+..+...+++|+..|.++....++. +++|+.|.++++|-...-.. .
T Consensus 82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~--~----------------------- 135 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVY--S----------------------- 135 (745)
T ss_pred eEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhc--c-----------------------
Confidence 999999999999999999999999999887776 99999999999997653321 1
Q ss_pred CeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcE
Q 036585 163 PLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSV 242 (304)
Q Consensus 163 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 242 (304)
+.+|+..|.+++.-|.+ .+++|+.|.+|++|.- ++.++++. +|...|..+++-+++ .+++++.||.|
T Consensus 136 ------l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~---gHtD~VRgL~vl~~~-~flScsNDg~I 202 (745)
T KOG0301|consen 136 ------LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFS---GHTDCVRGLAVLDDS-HFLSCSNDGSI 202 (745)
T ss_pred ------cCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhc---cchhheeeeEEecCC-CeEeecCCceE
Confidence 34799999999999988 7999999999999984 78888888 799999999998775 57789999999
Q ss_pred EEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccC
Q 036585 243 HAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPD 288 (304)
Q Consensus 243 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~ 288 (304)
+.|++ +++.+.++.+|..-+.++...+++..++++++| ++||.-+
T Consensus 203 r~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 203 RLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred EEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 99998 889999999999999999988888999999999 9999876
No 121
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.1e-26 Score=188.35 Aligned_cols=231 Identities=16% Similarity=0.227 Sum_probs=190.7
Q ss_pred eeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee
Q 036585 18 EEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY 97 (304)
Q Consensus 18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~ 97 (304)
..+..+...+++|++++.+++|.+|...+++.-..+...+-++.+++|+.+|+.++.|+. |-.|++.++.+......
T Consensus 57 ~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsd---D~~vK~~~~~D~s~~~~ 133 (933)
T KOG1274|consen 57 ELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSD---DTAVKLLNLDDSSQEKV 133 (933)
T ss_pred ceeEEEeecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecC---ceeEEEEeccccchhee
Confidence 334444556889999999999999999888766566666778999999999999999999 99999999999999999
Q ss_pred cccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCce
Q 036585 98 FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDAN 177 (304)
Q Consensus 98 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 177 (304)
+++|.++|.++.|+|++++|++.+-||.|++||+.++.....+..-....-. .....+.
T Consensus 134 lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~---------------------~~s~i~~ 192 (933)
T KOG1274|consen 134 LRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEF---------------------ILSRICT 192 (933)
T ss_pred ecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccc---------------------cccceee
Confidence 9999999999999999999999999999999999988776665421111000 0134567
Q ss_pred EEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeee
Q 036585 178 VVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWM 257 (304)
Q Consensus 178 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 257 (304)
.++|+|+|..|++.+.|+.|++|+..+++....+.... +...+..++|+|+|+|||+++.||.|.|||.++-+. .
T Consensus 193 ~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~-~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~ 267 (933)
T KOG1274|consen 193 RLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKL-SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----H 267 (933)
T ss_pred eeeecCCCCeEEeeccCCeEEEEccCCceeheeecccc-cccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----c
Confidence 89999998889999999999999999999888887543 334489999999999999999999999999987222 2
Q ss_pred ccCCCCceEEeCCCCcEEEE
Q 036585 258 SFDTEPPVIKWAPGSLMFVT 277 (304)
Q Consensus 258 ~~~~~i~~~~~~~~~~~l~s 277 (304)
.....|.+++|.|+...+-.
T Consensus 268 ~~~~~Vc~~aw~p~~n~it~ 287 (933)
T KOG1274|consen 268 EFKRAVCCEAWKPNANAITL 287 (933)
T ss_pred cccceeEEEecCCCCCeeEE
Confidence 34567999999998765543
No 122
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=2.7e-26 Score=185.07 Aligned_cols=282 Identities=15% Similarity=0.176 Sum_probs=204.1
Q ss_pred ceeeEeecccCcEEEEee--CCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee
Q 036585 17 SEEILQSMEVGIYLVTAS--DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY 94 (304)
Q Consensus 17 ~~~~i~~~~~~~~l~~~~--~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~ 94 (304)
.-..++++++|+|+|+|- ....++||++.....+..+..|+..|.|++|+|.++++++.+..- |-.|.+||.+.+..
T Consensus 80 ~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQH-DMIVnv~dWr~N~~ 158 (1080)
T KOG1408|consen 80 PLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQH-DMIVNVNDWRVNSS 158 (1080)
T ss_pred ceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeecccc-ceEEEhhhhhhccc
Confidence 345688999999999996 566799999999999999999999999999999999999887643 88899998876554
Q ss_pred eeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeece---------------------------------EE
Q 036585 95 SRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL---------------------------------LR 141 (304)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---------------------------------~~ 141 (304)
...-+ -...|..++|+.++.|+++.+. ..|++|.++.++.... +.
T Consensus 159 ~asnk-iss~Vsav~fsEdgSYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfa 236 (1080)
T KOG1408|consen 159 GASNK-ISSVVSAVAFSEDGSYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFA 236 (1080)
T ss_pred ccccc-cceeEEEEEEccCCceeeeeee-eeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEE
Confidence 44333 4568999999999999999875 7899998875541110 00
Q ss_pred Ee-----------------------ccc----------------------------------------------------
Q 036585 142 VQ-----------------------GRP---------------------------------------------------- 146 (304)
Q Consensus 142 ~~-----------------------~~~---------------------------------------------------- 146 (304)
.. ...
T Consensus 237 it~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~ 316 (1080)
T KOG1408|consen 237 ITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKN 316 (1080)
T ss_pred EecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccc
Confidence 00 000
Q ss_pred ------------eeEecCCC--eEEEecCCCeEEEEecC------------CCCCceEEEEec-----------CCcEEE
Q 036585 147 ------------AAAYDDQG--LVFGYEKGPLDIFSVGG------------DISDANVVKFSN-----------DGRLML 189 (304)
Q Consensus 147 ------------~~~~~~~~--~~~~~~~~~~~~~~~~~------------~~~~v~~~~~~~-----------~~~~l~ 189 (304)
...+++.. ....|.+..+.+|++.. |...|..+.--| -...|+
T Consensus 317 s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~ 396 (1080)
T KOG1408|consen 317 SESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFT 396 (1080)
T ss_pred cccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCcccee
Confidence 01111111 12267777888887764 333333333222 012488
Q ss_pred EeeCCCeEEEEEcCCCceeEEEEe----------------------------------CCCCCCcceEEEEcCCCcEEEE
Q 036585 190 LTTMEGHIHVLDSFRGTLLSTYNV----------------------------------KPVSRNSTLEASFSPEGMFVIS 235 (304)
Q Consensus 190 ~~~~dg~i~~~d~~~~~~~~~~~~----------------------------------~~~~~~~i~~~~~s~~~~~l~~ 235 (304)
+++.|++|++||+..+..-..+.. .-.....+.+++.||+|++||+
T Consensus 397 TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAs 476 (1080)
T KOG1408|consen 397 TCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLAS 476 (1080)
T ss_pred EecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecc
Confidence 999999999999875322111100 0012446889999999999999
Q ss_pred ecCCCcEEEEecCCCceeeeeeccCCCCceEEeCC---CCcEEEEecCc--eEEeccCC--ccccccccCCCC
Q 036585 236 GSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAP---GSLMFVTGSSE--LSFWIPDL--SKLGAYVGRNRG 301 (304)
Q Consensus 236 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~s~~~d--~~iw~~~~--~~~~~~~~~~~g 301 (304)
|..-|.++||++.+.+....+..|...|.|+.|+. ..++||+++.| |.|||... ..++++.+|...
T Consensus 477 GDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSss 549 (1080)
T KOG1408|consen 477 GDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSS 549 (1080)
T ss_pred cCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccc
Confidence 99999999999999998889999999999999986 35799999999 88998743 345666665543
No 123
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.95 E-value=3.7e-26 Score=182.17 Aligned_cols=116 Identities=15% Similarity=0.240 Sum_probs=99.3
Q ss_pred CCceEEEEec-CCcEEEEeeCCCeEEEEEcCCC-------ceeEEEEeCCCCCCcceEEEEcC-CCcEEEEecCCCcEEE
Q 036585 174 SDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRG-------TLLSTYNVKPVSRNSTLEASFSP-EGMFVISGSGDGSVHA 244 (304)
Q Consensus 174 ~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~-------~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~v 244 (304)
..|+.+.|+| |...|++++.||.|++|.+..+ ++...+. .|...|+++.|+| ..+.|++++.|.+|++
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt---~h~eKI~slRfHPLAadvLa~asyd~Ti~l 704 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILT---IHGEKITSLRFHPLAADVLAVASYDSTIEL 704 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeee---cccceEEEEEecchhhhHhhhhhccceeee
Confidence 4577888888 6678999999999999998654 3334445 6889999999999 5568999999999999
Q ss_pred EecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCccc
Q 036585 245 WSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKL 292 (304)
Q Consensus 245 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~ 292 (304)
||+++++....+.+|.+.|.+++|||+|+.+|+.+.| +++|....+..
T Consensus 705 WDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~ 754 (1012)
T KOG1445|consen 705 WDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ 754 (1012)
T ss_pred eehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC
Confidence 9999999999999999999999999999999999999 77776655443
No 124
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.9e-26 Score=173.18 Aligned_cols=228 Identities=17% Similarity=0.195 Sum_probs=174.8
Q ss_pred CcEEEEeeCCCeEEEEecCCc---cee------------------eeecccccceeEEEEccCCC-eEEEEecCCCCCce
Q 036585 27 GIYLVTASDDESIRLYDVTAA---TCL------------------KTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDESL 84 (304)
Q Consensus 27 ~~~l~~~~~d~~i~vw~~~~~---~~~------------------~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~d~~i 84 (304)
|+|+|.|+.|..|.|||+.=. .+. ..-.+|+..|..++|+..-+ .|++|+. |.+|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsa---D~TV 268 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSA---DKTV 268 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCC---CceE
Confidence 789999999999999997511 000 11236888999999988655 5666666 9999
Q ss_pred EEEEccCceeeeecccccccEEEEEEcC-CCCEEEEcccCCeEEEEeCCcceeec-eEEEeccceeEecCCCeEEEecCC
Q 036585 85 RLLSLHDNKYSRYFKGHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQG-LLRVQGRPAAAYDDQGLVFGYEKG 162 (304)
Q Consensus 85 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 162 (304)
++||+.++++..++..|.+.|.++.|+| ....|++|+.|+++.+.|.|...... ..+
T Consensus 269 ~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk--------------------- 327 (463)
T KOG0270|consen 269 KLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK--------------------- 327 (463)
T ss_pred EEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE---------------------
Confidence 9999999999999999999999999999 56689999999999999998532211 111
Q ss_pred CeEEEEecCCCCCceEEEEecCC-cEEEEeeCCCeEEEEEcCCC-ceeEEEEeCCCCCCcceEEEEcCC-CcEEEEecCC
Q 036585 163 PLDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRG-TLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 239 (304)
Q Consensus 163 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~d 239 (304)
-.+.|..++|.|.. ..++++..||+++-+|+|+. +++.+++ .|..+|.++++++. ..++++++.|
T Consensus 328 ---------~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~---AHd~~ISgl~~n~~~p~~l~t~s~d 395 (463)
T KOG0270|consen 328 ---------FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLK---AHDDEISGLSVNIQTPGLLSTASTD 395 (463)
T ss_pred ---------eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEE---eccCCcceEEecCCCCcceeecccc
Confidence 12578889998864 56778889999999999875 8888888 79999999999985 4578899999
Q ss_pred CcEEEEecCCCce--eeeeeccCCCCceEEeCCCCc-EEEEecCc--eEEeccCCc
Q 036585 240 GSVHAWSVRSGKE--VASWMSFDTEPPVIKWAPGSL-MFVTGSSE--LSFWIPDLS 290 (304)
Q Consensus 240 g~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~-~l~s~~~d--~~iw~~~~~ 290 (304)
+.|++|++....+ +..-..--+...|.++.|+-. +++.|+.. ++||++-..
T Consensus 396 ~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 396 KVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred ceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence 9999999865443 222111223467777888764 45555555 899998543
No 125
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=2.7e-26 Score=175.41 Aligned_cols=207 Identities=17% Similarity=0.281 Sum_probs=163.3
Q ss_pred ccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCce----------eeeecccccccEEEEEEcCCC-CEEEEcccC
Q 036585 55 SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK----------YSRYFKGHHDRVVLLSLCSSK-DCFISGSLD 123 (304)
Q Consensus 55 ~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~----------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d 123 (304)
.|.+.|+.+...|+...++++... .+.+.|||...-. +-..+.+|.+.-+++.|++.. ..|++++.|
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~--~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTS--SGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCC--CCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 478889999999987776665432 8999999986532 122677899888899999843 489999999
Q ss_pred CeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecC-CcEEEEeeCCCeEEEEEc
Q 036585 124 RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDS 202 (304)
Q Consensus 124 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~ 202 (304)
++|++||+.......... .....+.+|...|..++|++- ..+|++++.|+.+.|||+
T Consensus 200 ~~i~lwdi~~~~~~~~~~----------------------~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~ 257 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVV----------------------DPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDT 257 (422)
T ss_pred CcEEEEeccccccCCccc----------------------cceEEeecCCcceehhhccccchhhheeecCCCeEEEEEc
Confidence 999999997654421100 011223478899999999994 567888999999999999
Q ss_pred CC--CceeEEEEeCCCCCCcceEEEEcC-CCcEEEEecCCCcEEEEecCCC-ceeeeeeccCCCCceEEeCCCC-cEEEE
Q 036585 203 FR--GTLLSTYNVKPVSRNSTLEASFSP-EGMFVISGSGDGSVHAWSVRSG-KEVASWMSFDTEPPVIKWAPGS-LMFVT 277 (304)
Q Consensus 203 ~~--~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~~l~s 277 (304)
|+ .+...... .|.+.+.+++|+| ++..||+|+.|++|.+||+++. +++..+.+|...|.++.|+|.. ..||+
T Consensus 258 R~~~~~~~~~~~---ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLAS 334 (422)
T KOG0264|consen 258 RSNTSKPSHSVK---AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLAS 334 (422)
T ss_pred CCCCCCCccccc---ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEe
Confidence 95 33444444 7999999999999 6677899999999999999985 4588889999999999999965 67888
Q ss_pred ecCc--eEEeccC
Q 036585 278 GSSE--LSFWIPD 288 (304)
Q Consensus 278 ~~~d--~~iw~~~ 288 (304)
++.| +.+||+.
T Consensus 335 Sg~D~rl~vWDls 347 (422)
T KOG0264|consen 335 SGTDRRLNVWDLS 347 (422)
T ss_pred cccCCcEEEEecc
Confidence 8888 8888875
No 126
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=5.7e-24 Score=168.30 Aligned_cols=243 Identities=14% Similarity=0.176 Sum_probs=182.4
Q ss_pred eeEeecccCcEE-EEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee
Q 036585 19 EILQSMEVGIYL-VTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY 97 (304)
Q Consensus 19 ~~i~~~~~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~ 97 (304)
..+.++++|+.+ ++++.++.|++||..+++.+..+..+. .+..++|+|+++.+++++.. ++.+++||+.+.+.+..
T Consensus 34 ~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~--~~~l~~~d~~~~~~~~~ 110 (300)
T TIGR03866 34 RGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFALHPNGKILYIANED--DNLVTVIDIETRKVLAE 110 (300)
T ss_pred CceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEEECCCCCEEEEEcCC--CCeEEEEECCCCeEEeE
Confidence 447788999876 566788999999999988887776554 35678999999988766532 88999999998877776
Q ss_pred cccccccEEEEEEcCCCCEEEEcccCC-eEEEEeCCcceeeceEEEe-ccceeEecCCCeEE--Ee-cCCCeEEEEecCC
Q 036585 98 FKGHHDRVVLLSLCSSKDCFISGSLDR-TVLLWDQRAEKCQGLLRVQ-GRPAAAYDDQGLVF--GY-EKGPLDIFSVGGD 172 (304)
Q Consensus 98 ~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~ 172 (304)
+. +...+.+++|+|++++++++..++ .+.+||.++++........ ....+.+++++..+ .. .++.+.+|++...
T Consensus 111 ~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~ 189 (300)
T TIGR03866 111 IP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATR 189 (300)
T ss_pred ee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc
Confidence 65 234568899999999999888765 5677898877665443322 23346677777533 22 3567888876532
Q ss_pred C----------------CCceEEEEecCCcEEEEe-eCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEE
Q 036585 173 I----------------SDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS 235 (304)
Q Consensus 173 ~----------------~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 235 (304)
. .....++|+|++++++++ ..++.+.+||+++++....+. +...+.+++|+|+|++|++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~ 265 (300)
T TIGR03866 190 KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL----VGQRVWQLAFTPDEKYLLT 265 (300)
T ss_pred eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE----eCCCcceEEECCCCCEEEE
Confidence 1 012458899999986554 456789999999888776554 3457889999999999988
Q ss_pred e-cCCCcEEEEecCCCceeeeeeccCCCCceEEeCC
Q 036585 236 G-SGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAP 270 (304)
Q Consensus 236 ~-~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~ 270 (304)
+ ..++.|++||+++++++..+... ...+.++++|
T Consensus 266 ~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 266 TNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 6 46899999999999999988754 5669998876
No 127
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=9.7e-27 Score=170.92 Aligned_cols=247 Identities=15% Similarity=0.243 Sum_probs=193.5
Q ss_pred EEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEE
Q 036585 29 YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLL 108 (304)
Q Consensus 29 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~ 108 (304)
.|++.-.++++. .++++.+.+|+.+|..++.....+.+.+++. |.+.+||.+++++++..+.+|.+.|.++
T Consensus 126 rivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASA---DhTA~iWs~Esg~CL~~Y~GH~GSVNsi 196 (481)
T KOG0300|consen 126 RIVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASA---DHTARIWSLESGACLATYTGHTGSVNSI 196 (481)
T ss_pred hheeeecCCcee------EeehhhhcccccceeeehhhcCCcceeeccc---ccceeEEeeccccceeeecccccceeeE
Confidence 344444555422 3456778899999999999888888888888 9999999999999999999999999999
Q ss_pred EEcCCCCEEEEcccCCeEEEEeCC----cceeeceEEEecccee-EecCCCeEE----Eec--CCCeEEEEecCCCCCce
Q 036585 109 SLCSSKDCFISGSLDRTVLLWDQR----AEKCQGLLRVQGRPAA-AYDDQGLVF----GYE--KGPLDIFSVGGDISDAN 177 (304)
Q Consensus 109 ~~~~~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~--~~~~~~~~~~~~~~~v~ 177 (304)
+|++.+.++++++.|++..||... ..+....-........ .-+++..-. ..+ .-.+.+..+.+|...|.
T Consensus 197 kfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~ 276 (481)
T KOG0300|consen 197 KFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVS 276 (481)
T ss_pred EeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceE
Confidence 999999999999999999999732 1111110000000000 001111111 111 12345667789999999
Q ss_pred EEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC-ceeeee
Q 036585 178 VVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG-KEVASW 256 (304)
Q Consensus 178 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~ 256 (304)
+..|-..|+.+++++.|.+..+||+++++.+..+. +|....+.++-+|..+++++.+.|.+.++||++.. ..+..|
T Consensus 277 a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~Lt---GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VF 353 (481)
T KOG0300|consen 277 ACDWLAGGQQMVTASWDRTANLWDVETGEVVNILT---GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVF 353 (481)
T ss_pred ehhhhcCcceeeeeeccccceeeeeccCceecccc---CcchhccccccCCcceEEEEeccCceeEeccchhhcceeeee
Confidence 99999999999999999999999999999999998 89999999999999999999999999999999853 347788
Q ss_pred eccCCCCceEEeCCCCcEEEEecCc--eEEeccC
Q 036585 257 MSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPD 288 (304)
Q Consensus 257 ~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~ 288 (304)
++|...|+++.|.-+. .+++|++| +++|++.
T Consensus 354 QGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLr 386 (481)
T KOG0300|consen 354 QGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLR 386 (481)
T ss_pred cccccceeEEEEecCC-ceeecCCCceEEEeeec
Confidence 9999999999998775 56788888 9999984
No 128
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.3e-25 Score=172.27 Aligned_cols=236 Identities=14% Similarity=0.202 Sum_probs=196.6
Q ss_pred ceeeEeecccCcEEEEeeCCCeEEEEecC--CcceeeeecccccceeEEEEccCCC-eEEEEecCCCCCceEEEEccCce
Q 036585 17 SEEILQSMEVGIYLVTASDDESIRLYDVT--AATCLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDESLRLLSLHDNK 93 (304)
Q Consensus 17 ~~~~i~~~~~~~~l~~~~~d~~i~vw~~~--~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~d~~i~vwd~~~~~ 93 (304)
....+.|+|....|++++.|+++++|.+. ....++.+.....+|.+.+|.|+|. .+++++. ...++.||+.+.+
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r---rky~ysyDle~ak 291 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGR---RKYLYSYDLETAK 291 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEeccc---ceEEEEeeccccc
Confidence 34568899999999999999999999876 3456777777788999999999999 7777777 8899999999876
Q ss_pred ee--eeccccc-ccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEec
Q 036585 94 YS--RYFKGHH-DRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVG 170 (304)
Q Consensus 94 ~~--~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (304)
.. ....++. ..+.....+|++++++..+..|.|.+....+++.+..++..
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie--------------------------- 344 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE--------------------------- 344 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec---------------------------
Confidence 43 3333443 35778889999999999999999999999998888887754
Q ss_pred CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCC-
Q 036585 171 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRS- 249 (304)
Q Consensus 171 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~- 249 (304)
+.|..++|+.+++.|++++.+|.|++||+++..++.++... ..-.-+.+|.|+++.|||+|+..|.|.|||.++
T Consensus 345 ---G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~--G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~ 419 (514)
T KOG2055|consen 345 ---GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDD--GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSC 419 (514)
T ss_pred ---cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeec--CccceeeeeecCCCceEEeccCcceEEEeccchh
Confidence 56788999999999999999999999999999999988842 122345678889999999999999999999753
Q ss_pred -----CceeeeeeccCCCCceEEeCCCCcEEEEecCc----eEEecc
Q 036585 250 -----GKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE----LSFWIP 287 (304)
Q Consensus 250 -----~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d----~~iw~~ 287 (304)
.+++..+..-...|+++.|+||.+.||.+|.- +++-.+
T Consensus 420 ~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHv 466 (514)
T KOG2055|consen 420 FASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHV 466 (514)
T ss_pred hccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEec
Confidence 46677777778899999999999999988865 665544
No 129
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.7e-25 Score=162.89 Aligned_cols=240 Identities=16% Similarity=0.202 Sum_probs=150.5
Q ss_pred ccccceeEEEEccCCCeEEEEecCCCCCceEEEEccC-cee-eeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCC
Q 036585 55 SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-NKY-SRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQR 132 (304)
Q Consensus 55 ~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~-~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 132 (304)
...+.|.+++|||....++++++ ||++||+|+++. +.. .+....|.++|.+++|+.+|..+++|+.|+.+++||+.
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~S--WD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGS--WDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA 102 (347)
T ss_pred CcccchheeEeccccCceEEecc--cCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEcc
Confidence 35678999999997776665554 699999999987 332 24556799999999999999999999999999999999
Q ss_pred cceeeceEEEeccc-eeEecCCC----eEEEecCCCeEEEEecCCCCCceEEEE-------ecCCcEEEEeeCCCeEEEE
Q 036585 133 AEKCQGLLRVQGRP-AAAYDDQG----LVFGYEKGPLDIFSVGGDISDANVVKF-------SNDGRLMLLTTMEGHIHVL 200 (304)
Q Consensus 133 ~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~l~~~~~dg~i~~~ 200 (304)
+++....-...... .+.+-+.. ++.+.-++.++.|+.+.. .++..+.+ +--...++++..+..|.+|
T Consensus 103 S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~-~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vy 181 (347)
T KOG0647|consen 103 SGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS-NPVATLQLPERVYAADVLYPMAVVATAERHIAVY 181 (347)
T ss_pred CCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCC-CeeeeeeccceeeehhccCceeEEEecCCcEEEE
Confidence 99654433211111 11111111 123333444444443321 11111111 1112233444444444444
Q ss_pred EcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC--ceeeeeeccCC---------CCceEEeC
Q 036585 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG--KEVASWMSFDT---------EPPVIKWA 269 (304)
Q Consensus 201 d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~--~~~~~~~~~~~---------~i~~~~~~ 269 (304)
+++.+......... ..+-.+.+++..+|....+.|+-+|.+.|..+..+ +.-..++.|.. .|++|+|+
T Consensus 182 nL~n~~te~k~~~S-pLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~Fh 260 (347)
T KOG0647|consen 182 NLENPPTEFKRIES-PLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFH 260 (347)
T ss_pred EcCCCcchhhhhcC-cccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEee
Confidence 44333222111111 13445777888888777799999999999988776 33344555652 47889999
Q ss_pred CCCcEEEEecCc--eEEeccCCc-cccccccC
Q 036585 270 PGSLMFVTGSSE--LSFWIPDLS-KLGAYVGR 298 (304)
Q Consensus 270 ~~~~~l~s~~~d--~~iw~~~~~-~~~~~~~~ 298 (304)
|....|+|++.| ..+||-+.+ +|+....+
T Consensus 261 P~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~ 292 (347)
T KOG0647|consen 261 PVHGTLVTAGSDGTFSFWDKDARTKLKTSETH 292 (347)
T ss_pred cccceEEEecCCceEEEecchhhhhhhccCcC
Confidence 999999999999 888988653 45554443
No 130
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=9.9e-25 Score=169.32 Aligned_cols=227 Identities=21% Similarity=0.334 Sum_probs=182.3
Q ss_pred eEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee-----
Q 036585 20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY----- 94 (304)
Q Consensus 20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~----- 94 (304)
.+.|.++|+ ++||..+|.|.||+..+.+..+....|.+.|.+++...+|..|- |+. |..|..||-.-.+.
T Consensus 251 ~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgK---DRki~~Wd~~y~k~r~~el 325 (626)
T KOG2106|consen 251 CVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGK---DRKIILWDDNYRKLRETEL 325 (626)
T ss_pred EEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCc---cceEEeccccccccccccC
Confidence 466667665 67899999999999988888777779999999999999997666 777 99999998321100
Q ss_pred ------e-----------------------------eecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeece
Q 036585 95 ------S-----------------------------RYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL 139 (304)
Q Consensus 95 ------~-----------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 139 (304)
+ ....+|.+..+.++.+|+.+++++++.|+.+++|+ ..+.+..
T Consensus 326 Pe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt 403 (626)
T KOG2106|consen 326 PEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWT 403 (626)
T ss_pred chhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEE
Confidence 0 11246888889999999999999999999999999 4444433
Q ss_pred EEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCC
Q 036585 140 LRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN 219 (304)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~ 219 (304)
.. -..++.++.|+|.| .+++|+..|...+.|.++...+.... ...
T Consensus 404 ~~------------------------------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~----d~~ 448 (626)
T KOG2106|consen 404 KI------------------------------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT----DNE 448 (626)
T ss_pred EE------------------------------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe----cCC
Confidence 32 22567889999999 89999999999999999865555554 378
Q ss_pred cceEEEEcCCCcEEEEecCCCcEEEEecCCC-ceeeee-eccCCCCceEEeCCCCcEEEEecCc--eEEeccC
Q 036585 220 STLEASFSPEGMFVISGSGDGSVHAWSVRSG-KEVASW-MSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPD 288 (304)
Q Consensus 220 ~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~ 288 (304)
++++++|+|+|.+||.|+.|+.|++|.+... ...... +.+..+|+.+.|++|+++|.+-+.| +..|...
T Consensus 449 ~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 449 QLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred ceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccc
Confidence 9999999999999999999999999998654 333333 3345899999999999999999998 8888544
No 131
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.95 E-value=5.4e-26 Score=170.14 Aligned_cols=207 Identities=16% Similarity=0.303 Sum_probs=160.4
Q ss_pred ccccceeEEEEccCCC--eEEEEecCCCCCceEEEEccC----------------ceeeeecccccccEEEEEEcCC-CC
Q 036585 55 SKKYGVDLVCFTSHPT--TVIYSSKNGWDESLRLLSLHD----------------NKYSRYFKGHHDRVVLLSLCSS-KD 115 (304)
Q Consensus 55 ~~~~~v~~~~~~~~~~--~l~~~~~~~~d~~i~vwd~~~----------------~~~~~~~~~~~~~v~~~~~~~~-~~ 115 (304)
.|.+.++.+.-++-++ +.++-+. .|.|+||++.. .+++.++.+|...=++++|+|- ..
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse---~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSE---NGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred ccccccceeeecccCCcceeeeecc---cCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 4666777777776554 3444444 99999999853 2467788899999999999992 23
Q ss_pred EEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCC-cEEEEeeCC
Q 036585 116 CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDG-RLMLLTTME 194 (304)
Q Consensus 116 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d 194 (304)
.|++|.--+.|++|...++.-.. ...+ +.+|...|..++|||.. ..|++|+.|
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~v----d~~P----------------------f~gH~~SVEDLqWSptE~~vfaScS~D 279 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKV----DQRP----------------------FTGHTKSVEDLQWSPTEDGVFASCSCD 279 (440)
T ss_pred ccccCccccceEeeeeccCceee----cCcc----------------------ccccccchhhhccCCccCceEEeeecC
Confidence 58888888899999987754321 1111 12588899999999964 578889999
Q ss_pred CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCC---CceeeeeeccCCCCceEEeCCC
Q 036585 195 GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRS---GKEVASWMSFDTEPPVIKWAPG 271 (304)
Q Consensus 195 g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~---~~~~~~~~~~~~~i~~~~~~~~ 271 (304)
|+|+|||++.+.....+.. ..|...|+.+.|+....+||+|+.||+++|||+++ ++++..++.|..+|++|.|+|.
T Consensus 280 gsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~ 358 (440)
T KOG0302|consen 280 GSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPH 358 (440)
T ss_pred ceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccc
Confidence 9999999999844333322 26889999999999888999999999999999986 5678899999999999999995
Q ss_pred C-cEEEEecCc--eEEeccCCcc
Q 036585 272 S-LMFVTGSSE--LSFWIPDLSK 291 (304)
Q Consensus 272 ~-~~l~s~~~d--~~iw~~~~~~ 291 (304)
. ..|++++.| +.|||+..++
T Consensus 359 e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 359 EDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred cCceEEeccCCCcEEEEEeeccC
Confidence 3 556666666 9999997654
No 132
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=2.4e-26 Score=178.65 Aligned_cols=219 Identities=13% Similarity=0.167 Sum_probs=167.0
Q ss_pred eeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCce----eeeecc-cccccEEEEEEcCCCCEEEEcccCCe
Q 036585 51 KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK----YSRYFK-GHHDRVVLLSLCSSKDCFISGSLDRT 125 (304)
Q Consensus 51 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~----~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~ 125 (304)
..+++|+..|.++++.|.|..+++|+. |..|++||+.... ..+.+. .....|.++.|++.+..|++.+....
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~---Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSL---DYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccc---cceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence 457788899999999999999999998 9999999997532 222222 23457999999999999999888899
Q ss_pred EEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCC-cEEEEeeCCCeEEEEEcCC
Q 036585 126 VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFR 204 (304)
Q Consensus 126 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~ 204 (304)
.+++|-.........+. ... -..+....+|...+++.+|+|.. ..|++++.||++++||+..
T Consensus 238 akl~DRdG~~~~e~~KG-DQY----------------I~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~ 300 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKG-DQY----------------IRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNN 300 (641)
T ss_pred eeEEccCCceeeeeecc-chh----------------hhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCC
Confidence 99999554433322221 110 11233445788999999999975 5789999999999999976
Q ss_pred Cce-eEEEE--eCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCce---eeeeeccCC--CCceEEeCCCCcEEE
Q 036585 205 GTL-LSTYN--VKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKE---VASWMSFDT--EPPVIKWAPGSLMFV 276 (304)
Q Consensus 205 ~~~-~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~~~--~i~~~~~~~~~~~l~ 276 (304)
.+. ...+. ...+..-+++.++|+|||+++|+|+.||+|.+|+..+... ...-..|.. .|+||.||+||++|+
T Consensus 301 ~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~Ll 380 (641)
T KOG0772|consen 301 TKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLL 380 (641)
T ss_pred chhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhh
Confidence 432 33333 2223456889999999999999999999999999855322 222356776 899999999999999
Q ss_pred EecCc--eEEeccCC
Q 036585 277 TGSSE--LSFWIPDL 289 (304)
Q Consensus 277 s~~~d--~~iw~~~~ 289 (304)
+-+.| +++|++..
T Consensus 381 SRg~D~tLKvWDLrq 395 (641)
T KOG0772|consen 381 SRGFDDTLKVWDLRQ 395 (641)
T ss_pred hccCCCceeeeeccc
Confidence 99988 99999864
No 133
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=7.9e-26 Score=164.33 Aligned_cols=201 Identities=15% Similarity=0.270 Sum_probs=164.5
Q ss_pred ecccccceeEEEEcc-CCCeEEEEecCCCCCceEEEEccCcee----------e-----eecccccccEEEEEEcC-CCC
Q 036585 53 INSKKYGVDLVCFTS-HPTTVIYSSKNGWDESLRLLSLHDNKY----------S-----RYFKGHHDRVVLLSLCS-SKD 115 (304)
Q Consensus 53 ~~~~~~~v~~~~~~~-~~~~l~~~~~~~~d~~i~vwd~~~~~~----------~-----~~~~~~~~~v~~~~~~~-~~~ 115 (304)
...|.+.|+++...+ .++++++|+. ||.|.+||++.... . ..-.+|.-.|..+.|-| |..
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGga---dgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG 115 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGA---DGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG 115 (397)
T ss_pred eccCCCccceeeeccccceEEeecCC---CccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc
Confidence 345888999999987 6789999998 99999999976421 1 11235778999999999 666
Q ss_pred EEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecC---CcEEEEee
Q 036585 116 CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSND---GRLMLLTT 192 (304)
Q Consensus 116 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~ 192 (304)
.|.+++.|.++++||..+.+....++.+ +.|.+-++||- .-++++|.
T Consensus 116 mFtssSFDhtlKVWDtnTlQ~a~~F~me------------------------------~~VYshamSp~a~sHcLiA~gt 165 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQEAVDFKME------------------------------GKVYSHAMSPMAMSHCLIAAGT 165 (397)
T ss_pred eeecccccceEEEeecccceeeEEeecC------------------------------ceeehhhcChhhhcceEEEEec
Confidence 8999999999999999998887777644 34555666663 45788899
Q ss_pred CCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcE-EEEecCCCcEEEEecCCC-ceeee--------------e
Q 036585 193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF-VISGSGDGSVHAWSVRSG-KEVAS--------------W 256 (304)
Q Consensus 193 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~dg~i~v~d~~~~-~~~~~--------------~ 256 (304)
.+-.|++.|+.+|....++. +|...|.++.|+|...+ |++|+.||.|++||++.. .+... -
T Consensus 166 r~~~VrLCDi~SGs~sH~Ls---GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n 242 (397)
T KOG4283|consen 166 RDVQVRLCDIASGSFSHTLS---GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTN 242 (397)
T ss_pred CCCcEEEEeccCCcceeeec---cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccc
Confidence 99999999999999999999 89999999999997766 788999999999999753 22222 2
Q ss_pred eccCCCCceEEeCCCCcEEEEecCc--eEEeccCC
Q 036585 257 MSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDL 289 (304)
Q Consensus 257 ~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~ 289 (304)
..|.+.+++++|..++.++++.+.| +++|+...
T Consensus 243 ~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 243 TAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES 277 (397)
T ss_pred ccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence 4677889999999999999999988 99998754
No 134
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=6.3e-25 Score=160.87 Aligned_cols=232 Identities=13% Similarity=0.220 Sum_probs=186.1
Q ss_pred EEEEeeCCCeEEEEecCC------------cceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee
Q 036585 29 YLVTASDDESIRLYDVTA------------ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR 96 (304)
Q Consensus 29 ~l~~~~~d~~i~vw~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~ 96 (304)
.|++|++...|.=+++.- ..++..+..|.+++++++. ++.++++|+. |.+|+|||+.......
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGss---DetI~IYDm~k~~qlg 77 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSS---DETIHIYDMRKRKQLG 77 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCC---CCcEEEEeccchhhhc
Confidence 366777776666555431 1234567789999999999 7999999999 9999999999999999
Q ss_pred ecccccccEEEEEEcCCCC--EEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCC
Q 036585 97 YFKGHHDRVVLLSLCSSKD--CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDIS 174 (304)
Q Consensus 97 ~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (304)
.+..|.+.|+++.|.++.. .|++|+.||.|.+|+...-.....++ +|..
T Consensus 78 ~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK-----------------------------~H~~ 128 (362)
T KOG0294|consen 78 ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLK-----------------------------AHKG 128 (362)
T ss_pred ceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeec-----------------------------cccc
Confidence 9999999999999998665 89999999999999998877666665 6778
Q ss_pred CceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceee
Q 036585 175 DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVA 254 (304)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~ 254 (304)
.|+.++.+|.|++.++.+.|+.+++||+-.|+.....+. ....+.+.|+|.|.+++.+..++ |-+|.+.+.+...
T Consensus 129 ~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L----~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~ 203 (362)
T KOG0294|consen 129 QVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL----KNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFR 203 (362)
T ss_pred ccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc----CCcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhh
Confidence 899999999999999999999999999999988777763 33444599999999998887665 9999998877766
Q ss_pred eeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCC-ccccccccCCCC
Q 036585 255 SWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDL-SKLGAYVGRNRG 301 (304)
Q Consensus 255 ~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~-~~~~~~~~~~~g 301 (304)
.+.. ...+.++.|- ++..|++|++| +++||-+. ..+..+.+|+.-
T Consensus 204 ~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~R 251 (362)
T KOG0294|consen 204 EIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENR 251 (362)
T ss_pred hhhc-cccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhh
Confidence 6542 2557777775 45677777777 99999974 445566666643
No 135
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=5.3e-26 Score=160.83 Aligned_cols=205 Identities=17% Similarity=0.261 Sum_probs=167.3
Q ss_pred cccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCc---eeeeecccccccEEEEEEcC--CCCEEEEcccCCeEEE
Q 036585 54 NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN---KYSRYFKGHHDRVVLLSLCS--SKDCFISGSLDRTVLL 128 (304)
Q Consensus 54 ~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i 128 (304)
..|.+.|..+...--|++|+++++ |++|+|+..+++ +.+.++.+|.+||..++|.. -|.+|++++.||.|.|
T Consensus 8 t~H~D~IHda~lDyygkrlATcsS---D~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi 84 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSS---DGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII 84 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecC---CccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence 358888988888889999999999 999999999865 46778999999999999975 7899999999999999
Q ss_pred EeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecC--CcEEEEeeCCCeEEEEEcCCCc
Q 036585 129 WDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSND--GRLMLLTTMEGHIHVLDSFRGT 206 (304)
Q Consensus 129 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~ 206 (304)
|.-+.++-.+... ...|...|++++|.|. |-.|++++.||.|.+.+.++..
T Consensus 85 Wke~~g~w~k~~e---------------------------~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g 137 (299)
T KOG1332|consen 85 WKEENGRWTKAYE---------------------------HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG 137 (299)
T ss_pred EecCCCchhhhhh---------------------------hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC
Confidence 9988774433322 1257889999999886 5688999999999999887641
Q ss_pred eeEEEEeCCCCCCcceEEEEcCC---C-----------cEEEEecCCCcEEEEecCCCc--eeeeeeccCCCCceEEeCC
Q 036585 207 LLSTYNVKPVSRNSTLEASFSPE---G-----------MFVISGSGDGSVHAWSVRSGK--EVASWMSFDTEPPVIKWAP 270 (304)
Q Consensus 207 ~~~~~~~~~~~~~~i~~~~~s~~---~-----------~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~i~~~~~~~ 270 (304)
.-.+-.....|.-.+++++|.|. | +.|++|+.|+.|+||+..+++ .-..+.+|...|+.++|.|
T Consensus 138 ~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP 217 (299)
T KOG1332|consen 138 GWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAP 217 (299)
T ss_pred CccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhcc
Confidence 11111122268889999999995 4 569999999999999998753 3445889999999999999
Q ss_pred CC----cEEEEecCc--eEEeccC
Q 036585 271 GS----LMFVTGSSE--LSFWIPD 288 (304)
Q Consensus 271 ~~----~~l~s~~~d--~~iw~~~ 288 (304)
.- .+||+++.| +.||..+
T Consensus 218 ~~gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 218 SVGLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred ccCCCceeeEEecCCCcEEEEEec
Confidence 64 689999999 8888765
No 136
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4e-24 Score=171.22 Aligned_cols=234 Identities=13% Similarity=0.151 Sum_probs=190.0
Q ss_pred eEeecccCcEEEEeeCCCeEEEEecCCcc-eeeeeccc-ccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee
Q 036585 20 ILQSMEVGIYLVTASDDESIRLYDVTAAT-CLKTINSK-KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY 97 (304)
Q Consensus 20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~ 97 (304)
+++++...+.||.+-.||.|.+|++..+= +...+.++ ...|.+++|++ +..|++.+. +|.|.-||+.++++...
T Consensus 30 slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~---sg~i~EwDl~~lk~~~~ 105 (691)
T KOG2048|consen 30 SLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGL---SGSITEWDLHTLKQKYN 105 (691)
T ss_pred EEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecC---CceEEEEecccCceeEE
Confidence 35566668889999999999999998643 33445554 46799999995 456666666 99999999999999999
Q ss_pred cccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCce
Q 036585 98 FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDAN 177 (304)
Q Consensus 98 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 177 (304)
+....+.|++++.+|.+..++.|+.||.+..++...++........ ...+.+.
T Consensus 106 ~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~---------------------------rq~sRvL 158 (691)
T KOG2048|consen 106 IDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLM---------------------------RQKSRVL 158 (691)
T ss_pred ecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecc---------------------------cccceEE
Confidence 9988899999999999999999999998888887766654433221 2347889
Q ss_pred EEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeC-----CCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCce
Q 036585 178 VVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK-----PVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKE 252 (304)
Q Consensus 178 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-----~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~ 252 (304)
+++|+|++..++.|+.||.|++||..++......... .....-|.++.|-.++ .|++|..-|+|.+||...+.+
T Consensus 159 slsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTL 237 (691)
T KOG2048|consen 159 SLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTL 237 (691)
T ss_pred EEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcch
Confidence 9999999999999999999999999998877733211 1123346677766554 789999999999999999999
Q ss_pred eeeeeccCCCCceEEeCCCCcEEEEecCceEEe
Q 036585 253 VASWMSFDTEPPVIKWAPGSLMFVTGSSELSFW 285 (304)
Q Consensus 253 ~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~iw 285 (304)
++....|.+.|.+++..+++.++++++.|-++.
T Consensus 238 iqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii 270 (691)
T KOG2048|consen 238 IQSHSCHDADVLALAVADNEDRVFSAGVDPKII 270 (691)
T ss_pred hhhhhhhhcceeEEEEcCCCCeEEEccCCCceE
Confidence 999999999999999999999999999994333
No 137
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.94 E-value=4.3e-25 Score=162.38 Aligned_cols=229 Identities=15% Similarity=0.258 Sum_probs=179.5
Q ss_pred ccCcEEEEeeCCCeEEEEecCCcceeeeecc--cc---cceeEEEEccCCCeEEEEecCCCCCceEEEEc-cCcee--ee
Q 036585 25 EVGIYLVTASDDESIRLYDVTAATCLKTINS--KK---YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL-HDNKY--SR 96 (304)
Q Consensus 25 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~--~~---~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~-~~~~~--~~ 96 (304)
|+.+++|+.+.+.-|++||.-+|+....+.. |. ....+++|+|||.+|++|- ..+|+++|+ +.|.. +.
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy----krcirvFdt~RpGr~c~vy 196 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY----KRCIRVFDTSRPGRDCPVY 196 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc----cceEEEeeccCCCCCCcch
Confidence 4578999999999999999999998887764 33 3467899999999999997 889999999 45532 11
Q ss_pred e-c----ccccccEEEEEEcC-CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEec
Q 036585 97 Y-F----KGHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVG 170 (304)
Q Consensus 97 ~-~----~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (304)
. + .+..+-+.+++|+| +...++.++....+-||.-....+...+ .
T Consensus 197 ~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll-----------------------------g 247 (406)
T KOG2919|consen 197 TTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL-----------------------------G 247 (406)
T ss_pred hhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeee-----------------------------c
Confidence 1 1 12366789999999 5558999999888888876666554443 3
Q ss_pred CCCCCceEEEEecCCcEEEEeeC-CCeEEEEEcCCC-ceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecC
Q 036585 171 GDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFRG-TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVR 248 (304)
Q Consensus 171 ~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~ 248 (304)
+|.+.|+.++|.++|+.|++|+. +-.|..||++.. .++..+..+....+.-.-....|++++|++|+.||.|++||++
T Consensus 248 gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk 327 (406)
T KOG2919|consen 248 GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLK 327 (406)
T ss_pred ccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecC
Confidence 78899999999999999999876 678999999864 4444554333322333336677899999999999999999999
Q ss_pred C-CceeeeeeccCCCCceEEeCCCCcEEEEecCceEEecc
Q 036585 249 S-GKEVASWMSFDTEPPVIKWAPGSLMFVTGSSELSFWIP 287 (304)
Q Consensus 249 ~-~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~iw~~ 287 (304)
+ +..+..+..+...++.++++|--.++|+++.. +++..
T Consensus 328 ~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq-r~f~~ 366 (406)
T KOG2919|consen 328 DLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ-RIFKY 366 (406)
T ss_pred CCCCcccccccccccccceecCcccceeeeccCc-eeecC
Confidence 8 77788888899999999999998888888776 44433
No 138
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.94 E-value=2.7e-25 Score=172.20 Aligned_cols=218 Identities=16% Similarity=0.226 Sum_probs=185.8
Q ss_pred eEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc
Q 036585 20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK 99 (304)
Q Consensus 20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~ 99 (304)
++.+.....|+++|+..+.|+|||++...+.+.+++|...|+++.++....+|++++. .|.|.|..+.++.....|.
T Consensus 84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~---gGdiiih~~~t~~~tt~f~ 160 (673)
T KOG4378|consen 84 CVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSD---GGDIIIHGTKTKQKTTTFT 160 (673)
T ss_pred HHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEecc---CCcEEEEecccCcccccee
Confidence 3555566789999999999999999977778889999999999999999999999998 8999999999988777777
Q ss_pred cc-cccEEEEEEcCCCC-EEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCce
Q 036585 100 GH-HDRVVLLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDAN 177 (304)
Q Consensus 100 ~~-~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 177 (304)
.. ...|.-+.|+|..+ +|.+++.+|.|.+||+....+...+. +.|..+..
T Consensus 161 ~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~----------------------------~~HsAP~~ 212 (673)
T KOG4378|consen 161 IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHAS----------------------------EAHSAPCR 212 (673)
T ss_pred cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchh----------------------------hhccCCcC
Confidence 44 34566899999665 56778999999999998766554332 24778889
Q ss_pred EEEEecCC-cEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC-ceeee
Q 036585 178 VVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG-KEVAS 255 (304)
Q Consensus 178 ~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~-~~~~~ 255 (304)
.++|+|.. .+|++.+.|.+|.+||.+..+....+. ...+...++|+++|.+|++|...|.|..||++.. .++..
T Consensus 213 gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~----y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v 288 (673)
T KOG4378|consen 213 GICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT----YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAV 288 (673)
T ss_pred cceecCCccceEEEecccceEEEeecccccccceee----ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceE
Confidence 99999965 567778999999999999888777776 6678999999999999999999999999999864 56888
Q ss_pred eeccCCCCceEEeCCCC
Q 036585 256 WMSFDTEPPVIKWAPGS 272 (304)
Q Consensus 256 ~~~~~~~i~~~~~~~~~ 272 (304)
+..|...|++++|-|.-
T Consensus 289 ~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 289 RSAHDASVTRVAFQPSP 305 (673)
T ss_pred eeecccceeEEEeeecc
Confidence 89999999999997764
No 139
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.94 E-value=1.1e-25 Score=165.74 Aligned_cols=251 Identities=17% Similarity=0.276 Sum_probs=186.7
Q ss_pred CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCC-eEEEEecCCCCCceEEEEccCceeeeecc---ccc
Q 036585 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDESLRLLSLHDNKYSRYFK---GHH 102 (304)
Q Consensus 27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~d~~i~vwd~~~~~~~~~~~---~~~ 102 (304)
..++|.++.-|.|+|.|+.+++....+.+|...|+.+.+.|+.. ++++++. |..|++|++++..++..+- +|.
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~Sk---D~svRlwnI~~~~Cv~VfGG~egHr 181 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASK---DHSVRLWNIQTDVCVAVFGGVEGHR 181 (385)
T ss_pred CeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecC---CceEEEEeccCCeEEEEeccccccc
Confidence 46899999999999999999999999999999999999999764 5666666 9999999999999988764 799
Q ss_pred ccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecC--CCeEEE-EecCCCCCceEE
Q 036585 103 DRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEK--GPLDIF-SVGGDISDANVV 179 (304)
Q Consensus 103 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~v~~~ 179 (304)
+.|.++.|++++.++++++.|..+++|++...+....++. ...+.+++....+.. ..+..| .-..|...|.|+
T Consensus 182 deVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~----s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCv 257 (385)
T KOG1034|consen 182 DEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLEL----SITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCV 257 (385)
T ss_pred CcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhh----hcccCCCCccCcCCccccccccccccccccchHHHH
Confidence 9999999999999999999999999999986543332221 122222222111111 122222 223577888888
Q ss_pred EEecCCcEEEEeeCCCeEEEEEc-CCCce-------------eEEEEeCCCCCCcceE--EEEcCCCcEEEEecCCCcEE
Q 036585 180 KFSNDGRLMLLTTMEGHIHVLDS-FRGTL-------------LSTYNVKPVSRNSTLE--ASFSPEGMFVISGSGDGSVH 243 (304)
Q Consensus 180 ~~~~~~~~l~~~~~dg~i~~~d~-~~~~~-------------~~~~~~~~~~~~~i~~--~~~s~~~~~l~~~~~dg~i~ 243 (304)
.|- |.++++-+.++.|..|.. +-++. +.++. .....+.- .+|+|-++.||.|...|.|+
T Consensus 258 rw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~---~~~c~iWfirf~~d~~~~~la~gnq~g~v~ 332 (385)
T KOG1034|consen 258 RWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFD---YPMCDIWFIRFAFDPWQKMLALGNQSGKVY 332 (385)
T ss_pred HHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEec---cCccceEEEEEeecHHHHHHhhccCCCcEE
Confidence 884 678999888999999986 21111 12222 22333333 45667788999999999999
Q ss_pred EEecCCCcee--eeee--ccCCCCceEEeCCCCcEEEEecCceEEeccCC
Q 036585 244 AWSVRSGKEV--ASWM--SFDTEPPVIKWAPGSLMFVTGSSELSFWIPDL 289 (304)
Q Consensus 244 v~d~~~~~~~--~~~~--~~~~~i~~~~~~~~~~~l~s~~~d~~iw~~~~ 289 (304)
+||+++.++. .++. .....|...+|+.|+..|+..++|..||.|+.
T Consensus 333 vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 333 VWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred EEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 9999887663 2221 22457899999999999999999988887763
No 140
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.1e-24 Score=158.32 Aligned_cols=228 Identities=14% Similarity=0.230 Sum_probs=172.9
Q ss_pred eeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeece
Q 036585 60 VDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL 139 (304)
Q Consensus 60 v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 139 (304)
..|+.|++.|.+|++|+. ||.|.|||+.+...-+.+.+|..+|++++|+++|+.|++++.|..|.+||+..+.+...
T Consensus 26 a~~~~Fs~~G~~lAvGc~---nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCA---NGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeecc---CCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence 789999999999999999 99999999999998889999999999999999999999999999999999999998888
Q ss_pred EEEeccc-eeEecCCC-------------eEEEecCCCeEEEEecCC---CCCceEEEEecCCcEEEEeeCCCeEEEEEc
Q 036585 140 LRVQGRP-AAAYDDQG-------------LVFGYEKGPLDIFSVGGD---ISDANVVKFSNDGRLMLLTTMEGHIHVLDS 202 (304)
Q Consensus 140 ~~~~~~~-~~~~~~~~-------------~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~ 202 (304)
++...+. ...+.|.. .+..+++..-.+...... .....+..|.+.|+++++|...|.+.+||.
T Consensus 103 irf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 103 IRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred EEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 8765543 22333321 111222211111111111 112233468899999999999999999999
Q ss_pred CCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC-------ce--eeeeec--cCCCCceEEeCCC
Q 036585 203 FRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG-------KE--VASWMS--FDTEPPVIKWAPG 271 (304)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~-------~~--~~~~~~--~~~~i~~~~~~~~ 271 (304)
.+.+++..++.. ....|..+.|+..|++|+.-+.|..||.|+++.- ++ ...+.. ....=.+++|+.+
T Consensus 183 ~t~e~vas~rit--s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~d 260 (405)
T KOG1273|consen 183 ETLECVASFRIT--SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGD 260 (405)
T ss_pred chheeeeeeeec--hheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCC
Confidence 999999888842 2378889999999999999999999999998631 11 112211 1123357889999
Q ss_pred CcEEEEecCc---eEEeccCCccc
Q 036585 272 SLMFVTGSSE---LSFWIPDLSKL 292 (304)
Q Consensus 272 ~~~l~s~~~d---~~iw~~~~~~~ 292 (304)
|.|++.++.. +.||.-....+
T Consensus 261 geYv~a~s~~aHaLYIWE~~~GsL 284 (405)
T KOG1273|consen 261 GEYVCAGSARAHALYIWEKSIGSL 284 (405)
T ss_pred ccEEEeccccceeEEEEecCCcce
Confidence 9999998877 77887766554
No 141
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=6.1e-23 Score=168.21 Aligned_cols=276 Identities=13% Similarity=0.222 Sum_probs=209.3
Q ss_pred eeecce-eeEeecccCcEEEEeeCCCeEEEEecCCc-cee----eeecccccceeEEEEccC--CCeEEEEecCCCCCce
Q 036585 13 SLELSE-EILQSMEVGIYLVTASDDESIRLYDVTAA-TCL----KTINSKKYGVDLVCFTSH--PTTVIYSSKNGWDESL 84 (304)
Q Consensus 13 ~~~~~~-~~i~~~~~~~~l~~~~~d~~i~vw~~~~~-~~~----~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~~d~~i 84 (304)
....|. .+-...+.|.+++++..++.+.||+..+. +.. ..++.....|.++. +|. =+.++.|+. +|.+
T Consensus 109 ~~~~~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~---~G~l 184 (910)
T KOG1539|consen 109 TTLLHGAKVHLLLPFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSS---QGRL 184 (910)
T ss_pred EeccccceEEEEeeecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeec---CCcE
Confidence 334444 33344577999999999999999998874 221 11222222365554 443 356888888 9999
Q ss_pred EEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecc--ceeEecCCCeEE-----
Q 036585 85 RLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAYDDQGLVF----- 157 (304)
Q Consensus 85 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~----- 157 (304)
++|++++++.+.+++++...|+++.-+|-=..++.|..+|+|.+++++.++.+..++.... ..+++..+|..+
T Consensus 185 ql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~ 264 (910)
T KOG1539|consen 185 QLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR 264 (910)
T ss_pred EEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc
Confidence 9999999999999999999999999999888999999999999999999998888876421 122332222111
Q ss_pred -----------------------------------------EecCCCeEEEEec-------------CC-----------
Q 036585 158 -----------------------------------------GYEKGPLDIFSVG-------------GD----------- 172 (304)
Q Consensus 158 -----------------------------------------~~~~~~~~~~~~~-------------~~----------- 172 (304)
...++.+++|... +|
T Consensus 265 ~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~ 344 (910)
T KOG1539|consen 265 SNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYG 344 (910)
T ss_pred CCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeec
Confidence 2222333333221 00
Q ss_pred --------------------------------------------------------------------------------
Q 036585 173 -------------------------------------------------------------------------------- 172 (304)
Q Consensus 173 -------------------------------------------------------------------------------- 172 (304)
T Consensus 345 ~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~ 424 (910)
T KOG1539|consen 345 SQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSA 424 (910)
T ss_pred cCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceE
Confidence
Q ss_pred -----------------------CCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCC
Q 036585 173 -----------------------ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE 229 (304)
Q Consensus 173 -----------------------~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 229 (304)
...+++++.++-|++.+.|+..|.|-+|++++|-...++...+.|..+|+.++...-
T Consensus 425 ~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~ 504 (910)
T KOG1539|consen 425 YTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGT 504 (910)
T ss_pred EEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCC
Confidence 134677888889999999999999999999999999888655579999999999998
Q ss_pred CcEEEEecCCCcEEEEecCCCce-----------------------------------------eeeeeccCCCCceEEe
Q 036585 230 GMFVISGSGDGSVHAWSVRSGKE-----------------------------------------VASWMSFDTEPPVIKW 268 (304)
Q Consensus 230 ~~~l~~~~~dg~i~v~d~~~~~~-----------------------------------------~~~~~~~~~~i~~~~~ 268 (304)
++.+++++.+|.+++||.+...+ ++.+.+|...|++++|
T Consensus 505 n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~F 584 (910)
T KOG1539|consen 505 NRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTF 584 (910)
T ss_pred CceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEe
Confidence 99999999999999999876441 2334589999999999
Q ss_pred CCCCcEEEEecCc--eEEeccCCccc
Q 036585 269 APGSLMFVTGSSE--LSFWIPDLSKL 292 (304)
Q Consensus 269 ~~~~~~l~s~~~d--~~iw~~~~~~~ 292 (304)
||||++|++++.| |++||+....+
T Consensus 585 S~DgrWlisasmD~tIr~wDlpt~~l 610 (910)
T KOG1539|consen 585 SPDGRWLISASMDSTIRTWDLPTGTL 610 (910)
T ss_pred CCCCcEEEEeecCCcEEEEeccCcce
Confidence 9999999999999 99999876654
No 142
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=1.3e-22 Score=157.72 Aligned_cols=254 Identities=16% Similarity=0.228 Sum_probs=190.5
Q ss_pred EeecccCc-EEEEeeCCCeEEEEecCCcceeee---eccc-ccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceee
Q 036585 21 LQSMEVGI-YLVTASDDESIRLYDVTAATCLKT---INSK-KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYS 95 (304)
Q Consensus 21 i~~~~~~~-~l~~~~~d~~i~vw~~~~~~~~~~---~~~~-~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~ 95 (304)
..|.|.+. ++++.+ .+.+..|+.+++.+.++ ++.+ +..|.|++|.+++. +++|.+ +|.|.||+..+.+..
T Consensus 206 a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS---~G~i~Iw~~~~~~~~ 280 (626)
T KOG2106|consen 206 ATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDS---GGNILIWSKGTNRIS 280 (626)
T ss_pred EEeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecC---CceEEEEeCCCceEE
Confidence 46777654 555555 57899999988766543 3332 36799999999885 667777 999999999888877
Q ss_pred eecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEec---cc-eeEecCCCeEEEecCCCeEEE----
Q 036585 96 RYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG---RP-AAAYDDQGLVFGYEKGPLDIF---- 167 (304)
Q Consensus 96 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~---- 167 (304)
+....|.+.|.++....+|. |++|+.|+.|..|| ..-+..+..+.+. .. .+.-...+.+++...+.+..-
T Consensus 281 k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~ 358 (626)
T KOG2106|consen 281 KQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLEN 358 (626)
T ss_pred eEeeecCCceEEEEEecCcc-EeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecC
Confidence 77779999999999999985 55599999999999 3333333332221 11 112222224444443333222
Q ss_pred ----EecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEE
Q 036585 168 ----SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVH 243 (304)
Q Consensus 168 ----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 243 (304)
...+|......++.+|+...+++++.|+.+++|+ ..++..+.. ...+..++.|+|.| .+|.|...|...
T Consensus 359 ~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~----~~d~~~~~~fhpsg-~va~Gt~~G~w~ 431 (626)
T KOG2106|consen 359 GFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI----IEDPAECADFHPSG-VVAVGTATGRWF 431 (626)
T ss_pred CceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE----ecCceeEeeccCcc-eEEEeeccceEE
Confidence 2346777889999999999999999999999999 556666655 56788899999999 999999999999
Q ss_pred EEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCC
Q 036585 244 AWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDL 289 (304)
Q Consensus 244 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~ 289 (304)
+.|.++...+..-.. ..++++++|+|+|.+||.|+.| +.||.++.
T Consensus 432 V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 432 VLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA 478 (626)
T ss_pred EEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECC
Confidence 999988665554444 8899999999999999999999 77877654
No 143
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=2.9e-24 Score=171.03 Aligned_cols=246 Identities=19% Similarity=0.264 Sum_probs=176.0
Q ss_pred EeecccCcEEEEeeCCCeEEEEecCCcceeee--ecccccceeEEEEccCCCe-EEEEecCCCCCceEEEEccCce----
Q 036585 21 LQSMEVGIYLVTASDDESIRLYDVTAATCLKT--INSKKYGVDLVCFTSHPTT-VIYSSKNGWDESLRLLSLHDNK---- 93 (304)
Q Consensus 21 i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~-l~~~~~~~~d~~i~vwd~~~~~---- 93 (304)
+.+.|-...|++++.|.++++||+++.++... +.+|.+.|.+++|.|.... +++|+. ||.|.|||++-..
T Consensus 106 l~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgR---Dg~illWD~R~n~~d~~ 182 (720)
T KOG0321|consen 106 LKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGR---DGEILLWDCRCNGVDAL 182 (720)
T ss_pred eccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccC---CCcEEEEEEeccchhhH
Confidence 45667567899999999999999999888766 8899999999999997665 555666 9999999986432
Q ss_pred ----------------e-------eeecccccccEEE---EEEcCCCCEEEEccc-CCeEEEEeCCcceeeceEEEeccc
Q 036585 94 ----------------Y-------SRYFKGHHDRVVL---LSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLLRVQGRP 146 (304)
Q Consensus 94 ----------------~-------~~~~~~~~~~v~~---~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~ 146 (304)
+ +...+.+...|.+ +.+..|...|++++. |+.|++||+++.............
T Consensus 183 e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~ 262 (720)
T KOG0321|consen 183 EEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSD 262 (720)
T ss_pred HHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCccc
Confidence 0 1111234444554 556678889999887 999999999987654433221111
Q ss_pred eeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCce--eEEEEeCCCCCCcceEE
Q 036585 147 AAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL--LSTYNVKPVSRNSTLEA 224 (304)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--~~~~~~~~~~~~~i~~~ 224 (304)
..... ......+.++.....|.+|++.+.|+.|++||+.+... ...+.........+ .-
T Consensus 263 ~~~t~------------------skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~v-ks 323 (720)
T KOG0321|consen 263 KYPTH------------------SKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYV-KS 323 (720)
T ss_pred CccCc------------------ccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeee-ee
Confidence 00000 01123567788888899999999999999999976432 22222111111122 23
Q ss_pred EEcCCCcEEEEecCCCcEEEEecCCCce-eeeeeccCCCCceEEeCCCC-cEEEEecCc--eEEeccC
Q 036585 225 SFSPEGMFVISGSGDGSVHAWSVRSGKE-VASWMSFDTEPPVIKWAPGS-LMFVTGSSE--LSFWIPD 288 (304)
Q Consensus 225 ~~s~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~i~~~~~~~~~-~~l~s~~~d--~~iw~~~ 288 (304)
..+|++.+|++|+.|...++|.+.+.+. ...+.+|...|++++|.|.. .-++++++| ++||++.
T Consensus 324 ~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 324 ELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLS 391 (720)
T ss_pred ecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEecc
Confidence 5789999999999999999999988654 56678999999999998843 456666888 9999884
No 144
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.8e-24 Score=156.69 Aligned_cols=228 Identities=18% Similarity=0.233 Sum_probs=164.6
Q ss_pred EEEEecCCcce-----eeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee--eeecc--cccccEEEEE
Q 036585 39 IRLYDVTAATC-----LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY--SRYFK--GHHDRVVLLS 109 (304)
Q Consensus 39 i~vw~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~--~~~~~--~~~~~v~~~~ 109 (304)
.+-|+.+..+. +..+++|...|++++|+.||++|++++. |++|++|++..-.. .+.++ -.-+-.+.+.
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~---Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~ 139 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISG---DRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVV 139 (420)
T ss_pred hhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeC---CceEEEEecchhhhhhhhHhhccccCCCceEEE
Confidence 44565554433 3457899999999999999999999999 99999999976321 11111 0123457899
Q ss_pred EcCCCCEEEE-cccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEE
Q 036585 110 LCSSKDCFIS-GSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLM 188 (304)
Q Consensus 110 ~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 188 (304)
|.||-+-++. .-...++++|.+...+. .....+ .+.++ . ..--+.|...+..+-...+++++
T Consensus 140 FapDc~s~vv~~~~g~~l~vyk~~K~~d-G~~~~~---~v~~D--~-----------~~f~~kh~v~~i~iGiA~~~k~i 202 (420)
T KOG2096|consen 140 FAPDCKSVVVSVKRGNKLCVYKLVKKTD-GSGSHH---FVHID--N-----------LEFERKHQVDIINIGIAGNAKYI 202 (420)
T ss_pred ECCCcceEEEEEccCCEEEEEEeeeccc-CCCCcc---ccccc--c-----------cccchhcccceEEEeecCCceEE
Confidence 9998875544 44556889987653322 111000 00000 0 00001355566667777789999
Q ss_pred EEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecC---CC-----ceeeeeeccC
Q 036585 189 LLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVR---SG-----KEVASWMSFD 260 (304)
Q Consensus 189 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~---~~-----~~~~~~~~~~ 260 (304)
++++.|..|.+|+++ |+.+..+. .....-+..+.||+|+++++++-.-.|++|..- +| ..+.++++|.
T Consensus 203 msas~dt~i~lw~lk-Gq~L~~id---tnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~ 278 (420)
T KOG2096|consen 203 MSASLDTKICLWDLK-GQLLQSID---TNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ 278 (420)
T ss_pred EEecCCCcEEEEecC-Cceeeeec---cccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch
Confidence 999999999999998 88888887 345566678999999999999988889999873 33 2356779999
Q ss_pred CCCceEEeCCCCcEEEEecCc--eEEeccCCc
Q 036585 261 TEPPVIKWAPGSLMFVTGSSE--LSFWIPDLS 290 (304)
Q Consensus 261 ~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~ 290 (304)
..|..++|+|+.+.+++.+.| .+||+.+.+
T Consensus 279 saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr 310 (420)
T KOG2096|consen 279 SAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR 310 (420)
T ss_pred hheeeeeeCCCcceeEEEecCCcEEEeeccce
Confidence 999999999999999999999 999998764
No 145
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=7.4e-24 Score=162.66 Aligned_cols=234 Identities=12% Similarity=0.181 Sum_probs=190.1
Q ss_pred eeEeecccCc-EEEEeeCCCeEEEEecCCccee--eeecccc-cceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee
Q 036585 19 EILQSMEVGI-YLVTASDDESIRLYDVTAATCL--KTINSKK-YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY 94 (304)
Q Consensus 19 ~~i~~~~~~~-~l~~~~~d~~i~vw~~~~~~~~--~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~ 94 (304)
....+.|+|. .+++++....+..||+.+.+.. ..+.++. ..+.....+|++++|+..+. .|.|.+.-..+++.
T Consensus 261 ~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~---~G~I~lLhakT~el 337 (514)
T KOG2055|consen 261 QKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN---NGHIHLLHAKTKEL 337 (514)
T ss_pred ceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEccc---CceEEeehhhhhhh
Confidence 3456778898 8999999999999999987643 3333443 46778889999999999998 99999999999999
Q ss_pred eeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCC
Q 036585 95 SRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDIS 174 (304)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (304)
+.+++ -.+.|..+.|+.+++.|++++.+|.|.+||++...++..+.-.+..
T Consensus 338 i~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v---------------------------- 388 (514)
T KOG2055|consen 338 ITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV---------------------------- 388 (514)
T ss_pred hheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcc----------------------------
Confidence 99888 6789999999999999999999999999999999887777644321
Q ss_pred CceEEEEecCCcEEEEeeCCCeEEEEEcCC------CceeEEEEeCCCCCCcceEEEEcCCCcEEEEec--CCCcEEEEe
Q 036585 175 DANVVKFSNDGRLMLLTTMEGHIHVLDSFR------GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS--GDGSVHAWS 246 (304)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~v~d 246 (304)
.-+.++.++++.+||+|+..|.|.|||..+ .+++..+. .-...|++++|+||++.||.++ .+..+++-.
T Consensus 389 ~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d---NLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVH 465 (514)
T KOG2055|consen 389 HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD---NLTTAITSLQFNHDAQILAIASRVKKNALRLVH 465 (514)
T ss_pred ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh---hhheeeeeeeeCcchhhhhhhhhccccceEEEe
Confidence 235688889999999999999999999643 34444444 3567899999999999998887 466799988
Q ss_pred cCCCceeeeeecc---CCCCceEEeCCCCcEEEEecCc--eEEecc
Q 036585 247 VRSGKEVASWMSF---DTEPPVIKWAPGSLMFVTGSSE--LSFWIP 287 (304)
Q Consensus 247 ~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~s~~~d--~~iw~~ 287 (304)
+.+......++.. -+.++|++|+|.+.+||.|..+ +.+|.+
T Consensus 466 vPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 466 VPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred ccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 8877666655433 3568999999999999999988 777754
No 146
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=2.6e-23 Score=164.68 Aligned_cols=272 Identities=12% Similarity=0.200 Sum_probs=204.2
Q ss_pred cceeeeecceeeEee---cccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceE
Q 036585 9 EDKVSLELSEEILQS---MEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 85 (304)
Q Consensus 9 ~~~~~~~~~~~~i~~---~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~ 85 (304)
.+.....+|.+.+.+ .+.|.+|++|+.||+||||.+.++.+++++.... .|.|++|+|.+..-+.+.+. ...+.
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~-~I~~vaw~P~~~~~vLAvA~--~~~~~ 467 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS-EIRSVAWNPLSDLCVLAVAV--GECVL 467 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc-eeEEEEecCCCCceeEEEEe--cCceE
Confidence 345567788877554 4669999999999999999999999999887544 89999999987643222211 22233
Q ss_pred EEEccCc---------------------------------e----eeeecccccccEEEEEEcCCCCEEEEccc---CCe
Q 036585 86 LLSLHDN---------------------------------K----YSRYFKGHHDRVVLLSLCSSKDCFISGSL---DRT 125 (304)
Q Consensus 86 vwd~~~~---------------------------------~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~ 125 (304)
|.+..-| + -++..-.|...|..+.|+..|.||++... ...
T Consensus 468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~ 547 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKS 547 (733)
T ss_pred EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcce
Confidence 3332111 0 12233347889999999999999998755 357
Q ss_pred EEEEeCCcceeeceEEEe--ccceeEecCCC-eEEEecCCCeEEEEecC---------CCCCceEEEEecCCcEEEEeeC
Q 036585 126 VLLWDQRAEKCQGLLRVQ--GRPAAAYDDQG-LVFGYEKGPLDIFSVGG---------DISDANVVKFSNDGRLMLLTTM 193 (304)
Q Consensus 126 i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~ 193 (304)
|.|+++.....+..|... ....+.|+|.. .++......+++|++.. ....|..++.+|.|..|++++.
T Consensus 548 VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~ 627 (733)
T KOG0650|consen 548 VLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSY 627 (733)
T ss_pred EEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecC
Confidence 999999877766555332 23356677765 55677778899998753 3456888999999999999999
Q ss_pred CCeEEEEEcCCC-ceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecC-------CC--ceeeeeeccCCC-
Q 036585 194 EGHIHVLDSFRG-TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVR-------SG--KEVASWMSFDTE- 262 (304)
Q Consensus 194 dg~i~~~d~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~-------~~--~~~~~~~~~~~~- 262 (304)
|+.+..||+.-. ++.+++. .|...+++++|++.-.++++|+.||++.|+.-. +. -+++.+++|...
T Consensus 628 d~k~~WfDldlsskPyk~lr---~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~ 704 (733)
T KOG0650|consen 628 DKKMCWFDLDLSSKPYKTLR---LHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTN 704 (733)
T ss_pred CCeeEEEEcccCcchhHHhh---hhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeec
Confidence 999999999754 4555666 588999999999999999999999999998532 11 236777888765
Q ss_pred ---CceEEeCCCCcEEEEecCc--eEEec
Q 036585 263 ---PPVIKWAPGSLMFVTGSSE--LSFWI 286 (304)
Q Consensus 263 ---i~~~~~~~~~~~l~s~~~d--~~iw~ 286 (304)
|....|+|...+|++++.| +++|.
T Consensus 705 ~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 705 DLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred ccceEeecccCCCceEEecCCCceEEeeC
Confidence 8888999999999999999 88873
No 147
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=1.7e-23 Score=168.20 Aligned_cols=269 Identities=17% Similarity=0.237 Sum_probs=195.2
Q ss_pred cceee---EeecccCcEEEEeeCCCeEEEEecCCcc--ee-----eeecccccceeEEEEccCCCeEEEEecCCCCCceE
Q 036585 16 LSEEI---LQSMEVGIYLVTASDDESIRLYDVTAAT--CL-----KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 85 (304)
Q Consensus 16 ~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~~--~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~ 85 (304)
+|++- +.|.|.+..|++++.|.++.+|...+.. -+ -...+...+....-|+|+++.+++-+. -|..+
T Consensus 265 GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~---~Gg~h 341 (764)
T KOG1063|consen 265 GHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGR---TGGFH 341 (764)
T ss_pred CcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecc---cCcEE
Confidence 56553 6688899999999999999999876542 11 122334566889999999999999888 99999
Q ss_pred EEEccCc---eeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceee-ceEE---Eec--cceeEecC----
Q 036585 86 LLSLHDN---KYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ-GLLR---VQG--RPAAAYDD---- 152 (304)
Q Consensus 86 vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~---~~~--~~~~~~~~---- 152 (304)
+|.-.+. .+...+.+|.+.|..++|+|.|.+|++.+.|.+-|++-.-..+.. ..+. .++ ..++++-+
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~ 421 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ 421 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence 9983322 234456799999999999999999999999999998753311100 0000 000 00000000
Q ss_pred -----CCeEE------------------------------------EecCCCeE--------------------------
Q 036585 153 -----QGLVF------------------------------------GYEKGPLD-------------------------- 165 (304)
Q Consensus 153 -----~~~~~------------------------------------~~~~~~~~-------------------------- 165 (304)
+..++ +.+++...
T Consensus 422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ 501 (764)
T KOG1063|consen 422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT 501 (764)
T ss_pred eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence 00000 11111000
Q ss_pred ----------------EEEecCCCCCceEEEEecCCcEEEEeeCCC-----eEEEEEcCCCceeEEEEeCCCCCCcceEE
Q 036585 166 ----------------IFSVGGDISDANVVKFSNDGRLMLLTTMEG-----HIHVLDSFRGTLLSTYNVKPVSRNSTLEA 224 (304)
Q Consensus 166 ----------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~~~~~~~~i~~~ 224 (304)
+..+.+|...|.+++.+|+++++++++... .|++|+..+......+. .|.-.|+.+
T Consensus 502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~---~HsLTVT~l 578 (764)
T KOG1063|consen 502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELE---GHSLTVTRL 578 (764)
T ss_pred CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheec---ccceEEEEE
Confidence 001235778899999999999999988653 59999999888888777 799999999
Q ss_pred EEcCCCcEEEEecCCCcEEEEecCCCce----eeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCc
Q 036585 225 SFSPEGMFVISGSGDGSVHAWSVRSGKE----VASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLS 290 (304)
Q Consensus 225 ~~s~~~~~l~~~~~dg~i~v~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~ 290 (304)
+|||||++|++.+.|+++.+|....... ....+.|..-|++..|+|++.+++|+|.| +++|...-.
T Consensus 579 ~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 579 AFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred EECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 9999999999999999999999754322 23357899999999999999999999999 999977544
No 148
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.3e-22 Score=161.28 Aligned_cols=240 Identities=18% Similarity=0.194 Sum_probs=193.6
Q ss_pred eeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceee--e
Q 036585 19 EILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYS--R 96 (304)
Q Consensus 19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~--~ 96 (304)
+.+.|. .|..|++.+.+|.|.-||+.+++++..+....+.|.+++.+|.++.++.++. ||.+..++...++.. .
T Consensus 73 E~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Igcd---dGvl~~~s~~p~~I~~~r 148 (691)
T KOG2048|consen 73 ESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCD---DGVLYDFSIGPDKITYKR 148 (691)
T ss_pred eeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecC---CceEEEEecCCceEEEEe
Confidence 446666 5678889999999999999999999999999999999999999999999998 998888888777643 3
Q ss_pred ecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCc
Q 036585 97 YFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDA 176 (304)
Q Consensus 97 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 176 (304)
.+...++.|.++.|+|++..+++|+.||.|++||..++........+-... . +....-|
T Consensus 149 ~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l------------~---------k~~~~iV 207 (691)
T KOG2048|consen 149 SLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRL------------S---------KREPTIV 207 (691)
T ss_pred ecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeeccccc------------c---------cCCceEE
Confidence 444567899999999999999999999999999999888776332211100 0 0012235
Q ss_pred eEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCce----
Q 036585 177 NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKE---- 252 (304)
Q Consensus 177 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~---- 252 (304)
.++.|-.++ .+++|...|+|.+||...+..+..+. .|...|.+++.+++++++++++.|+.|.-|...+.+.
T Consensus 208 WSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~---~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~ 283 (691)
T KOG2048|consen 208 WSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHS---CHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVI 283 (691)
T ss_pred EEEEEeecC-cEEEecCCceEEEEcccCcchhhhhh---hhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceee
Confidence 567776555 58999999999999999999999988 6899999999999999999999999999998766543
Q ss_pred eeeeeccCCCCceEEeCCCCcEEEEecCceEEeccCC
Q 036585 253 VASWMSFDTEPPVIKWAPGSLMFVTGSSELSFWIPDL 289 (304)
Q Consensus 253 ~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~iw~~~~ 289 (304)
......|...+.+++..++ .+++|+.|..+.....
T Consensus 284 ~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s 318 (691)
T KOG2048|consen 284 NSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSS 318 (691)
T ss_pred eccccCCcccceeeeeecc--eEEecceeeEEEEccc
Confidence 2233578889999999887 8999999955554433
No 149
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.8e-24 Score=181.61 Aligned_cols=236 Identities=17% Similarity=0.207 Sum_probs=187.4
Q ss_pred EeecccCcE----EEEeeCCCeEEEEecCC------cceeeeecccccceeEEEEccCCC-eEEEEecCCCCCceEEEEc
Q 036585 21 LQSMEVGIY----LVTASDDESIRLYDVTA------ATCLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDESLRLLSL 89 (304)
Q Consensus 21 i~~~~~~~~----l~~~~~d~~i~vw~~~~------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~d~~i~vwd~ 89 (304)
+.|.+.|.. ||.|..||.|.+||... ...+.+...|++.|..+.|++... .|++|+. ||.|.|||+
T Consensus 70 L~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~---~geI~iWDl 146 (1049)
T KOG0307|consen 70 LAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGAD---DGEILIWDL 146 (1049)
T ss_pred eeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCC---CCcEEEecc
Confidence 556666554 89999999999999764 235667788999999999999776 7888887 999999999
Q ss_pred cCceeeeecc--cccccEEEEEEcC-CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEE
Q 036585 90 HDNKYSRYFK--GHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDI 166 (304)
Q Consensus 90 ~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (304)
...+...... ...+.|.+++|+. ..+.|++++.+|.+.|||++..+.+..+....
T Consensus 147 nn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~---------------------- 204 (1049)
T KOG0307|consen 147 NKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTP---------------------- 204 (1049)
T ss_pred CCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCC----------------------
Confidence 8866554442 2457899999986 45578899999999999999886655443221
Q ss_pred EEecCCCCCceEEEEecCC-cEEEEeeCCC---eEEEEEcCCC-ceeEEEEeCCCCCCcceEEEEcCCC-cEEEEecCCC
Q 036585 167 FSVGGDISDANVVKFSNDG-RLMLLTTMEG---HIHVLDSFRG-TLLSTYNVKPVSRNSTLEASFSPEG-MFVISGSGDG 240 (304)
Q Consensus 167 ~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg---~i~~~d~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg 240 (304)
....+..++|+|++ ..+++++.|. .|.+||+|.- .+.+.++ .|...|.++.|++.+ .+|++++.|+
T Consensus 205 -----~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~---~H~~GilslsWc~~D~~lllSsgkD~ 276 (1049)
T KOG0307|consen 205 -----GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILE---GHQRGILSLSWCPQDPRLLLSSGKDN 276 (1049)
T ss_pred -----CccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhc---ccccceeeeccCCCCchhhhcccCCC
Confidence 11347789999986 3456665543 6999998753 4556665 799999999999955 8899999999
Q ss_pred cEEEEecCCCceeeeeeccCCCCceEEeCCCCc-EEEEecCc--eEEeccCC
Q 036585 241 SVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSL-MFVTGSSE--LSFWIPDL 289 (304)
Q Consensus 241 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~d--~~iw~~~~ 289 (304)
.|.+|+.++++.+..+......+..+.|.|... .++.++-| |.||.+..
T Consensus 277 ~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 277 RIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred CeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 999999999999999988889999999999776 77777777 88887654
No 150
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=4e-22 Score=145.84 Aligned_cols=234 Identities=16% Similarity=0.186 Sum_probs=179.9
Q ss_pred cccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcce
Q 036585 56 KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEK 135 (304)
Q Consensus 56 ~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 135 (304)
....|..+.|+|.+..|++++- ||++++||+...+....++ |..++.+++|.+ ...+++|+.||.|+.+|+.++.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssW---DgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSW---DGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEec---cCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCc
Confidence 3578999999999999999986 9999999999887666666 999999999987 4579999999999999999887
Q ss_pred eeceEEEecc-ceeEec--CCCeEEEecCCCeEEEEecC--------CCCCceEEEEecCCcEEEEeeCCCeEEEEEcCC
Q 036585 136 CQGLLRVQGR-PAAAYD--DQGLVFGYEKGPLDIFSVGG--------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR 204 (304)
Q Consensus 136 ~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 204 (304)
.......... .++... .+..+.+.-++.+++|+... ....|.++. -.|..|++|+.+..+.+||+++
T Consensus 87 ~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~--v~g~~LvVg~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 87 EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMD--VSGNRLVVGTSDRKVLIYDLRN 164 (323)
T ss_pred ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEe--ccCCEEEEeecCceEEEEEccc
Confidence 6555443322 233333 55677788899999998763 223444444 4678899999999999999998
Q ss_pred CceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC----ceeeeeeccC---------CCCceEEeCCC
Q 036585 205 GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG----KEVASWMSFD---------TEPPVIKWAPG 271 (304)
Q Consensus 205 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~----~~~~~~~~~~---------~~i~~~~~~~~ 271 (304)
........ ...-+..+.++++-|++.-.++++-||.|.+=.+... +....++.|. -||++|+|+|-
T Consensus 165 ~~~~~q~r-eS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~ 243 (323)
T KOG1036|consen 165 LDEPFQRR-ESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI 243 (323)
T ss_pred ccchhhhc-cccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence 76555332 1235678899999998888999999999888666554 3344555554 37999999999
Q ss_pred CcEEEEecCc--eEEeccCCc-ccccccc
Q 036585 272 SLMFVTGSSE--LSFWIPDLS-KLGAYVG 297 (304)
Q Consensus 272 ~~~l~s~~~d--~~iw~~~~~-~~~~~~~ 297 (304)
...||||+.| +.+|+...+ ++.++..
T Consensus 244 ~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~ 272 (323)
T KOG1036|consen 244 HGTFATGGSDGIVNIWDLFNRKRLKQLAK 272 (323)
T ss_pred cceEEecCCCceEEEccCcchhhhhhccC
Confidence 9999999999 899998554 4555443
No 151
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.91 E-value=2.5e-23 Score=165.75 Aligned_cols=264 Identities=17% Similarity=0.199 Sum_probs=177.5
Q ss_pred CcEEEEeeCCCeEEEEecCCcce------eeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee--c
Q 036585 27 GIYLVTASDDESIRLYDVTAATC------LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY--F 98 (304)
Q Consensus 27 ~~~l~~~~~d~~i~vw~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~--~ 98 (304)
...|+.+..||.|.++|...... +.....|...|..+.|.|....|++++. |.++++||+.+.+.+.. +
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasG---DsT~r~Wdvk~s~l~G~~~~ 140 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASG---DSTIRPWDVKTSRLVGGRLN 140 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccC---Cceeeeeeeccceeecceee
Confidence 56899999999999999764322 3556679999999999997777888887 99999999999988776 8
Q ss_pred ccccccEEEEEEcC-CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEe----cCCCeEEEecCCCeEEEEecCCC
Q 036585 99 KGHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAY----DDQGLVFGYEKGPLDIFSVGGDI 173 (304)
Q Consensus 99 ~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 173 (304)
.+|.+.|.+++|.| +...|++|+.||.|.|||++.................. .+... ...++.....+.
T Consensus 141 ~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp------~~kr~~k~kA~s 214 (720)
T KOG0321|consen 141 LGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKP------LKKRIRKWKAAS 214 (720)
T ss_pred cccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCch------hhcccccccccc
Confidence 89999999999999 45589999999999999998654211100000000000 00000 000011111223
Q ss_pred CCceE---EEEecCCcEEEEeeC-CCeEEEEEcCCCceeEEEEeC--------CCCCCcceEEEEcCCCcEEEEecCCCc
Q 036585 174 SDANV---VKFSNDGRLMLLTTM-EGHIHVLDSFRGTLLSTYNVK--------PVSRNSTLEASFSPEGMFVISGSGDGS 241 (304)
Q Consensus 174 ~~v~~---~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~--------~~~~~~i~~~~~s~~~~~l~~~~~dg~ 241 (304)
..+.+ +.+..|...|++++. |+.|+|||+++.......... ......++++..+..|.+|++.+.|+.
T Consensus 215 ~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~s 294 (720)
T KOG0321|consen 215 NTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNS 294 (720)
T ss_pred CceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCc
Confidence 33333 455578888888877 999999999876544332211 111345677888888899988888999
Q ss_pred EEEEecCCCc--eeeeeeccCCC--CceEEeCCCCcEEEEecCc--eEEeccCCcc--ccccccCC
Q 036585 242 VHAWSVRSGK--EVASWMSFDTE--PPVIKWAPGSLMFVTGSSE--LSFWIPDLSK--LGAYVGRN 299 (304)
Q Consensus 242 i~v~d~~~~~--~~~~~~~~~~~--i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~--~~~~~~~~ 299 (304)
|++||+.+.. ++..+.++... -..-..+||+.++++|+.| ..+|.++.-. +..+.||.
T Consensus 295 Iy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght 360 (720)
T KOG0321|consen 295 IYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHT 360 (720)
T ss_pred EEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcc
Confidence 9999997643 34444443221 1223468999999999999 7788775433 23445544
No 152
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=2.1e-22 Score=154.64 Aligned_cols=242 Identities=12% Similarity=0.134 Sum_probs=182.1
Q ss_pred eeeEeecccC--cEEEEeeCCCeEEEEecCCc----ceeeeecccccceeEEEEccC-CCeEEEEecCCCCCceEEEEcc
Q 036585 18 EEILQSMEVG--IYLVTASDDESIRLYDVTAA----TCLKTINSKKYGVDLVCFTSH-PTTVIYSSKNGWDESLRLLSLH 90 (304)
Q Consensus 18 ~~~i~~~~~~--~~l~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~d~~i~vwd~~ 90 (304)
..++.|+|.. +++|+|..-|.|-+||+.+. .-+..+..|..+|.++.|+|. ...+++.+. ||+|++-|++
T Consensus 189 it~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy---DGtiR~~D~~ 265 (498)
T KOG4328|consen 189 ITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSY---DGTIRLQDFE 265 (498)
T ss_pred eEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeecc---Cceeeeeeec
Confidence 3456677763 68999999999999999532 234567789999999999995 456777777 9999999999
Q ss_pred Cceeeeeccc--ccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEE
Q 036585 91 DNKYSRYFKG--HHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFS 168 (304)
Q Consensus 91 ~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (304)
.+.....+.. ....+..+.|+.+...++.+..=|...+||++++..... .
T Consensus 266 ~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~----------------------------~ 317 (498)
T KOG4328|consen 266 GNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYE----------------------------N 317 (498)
T ss_pred chhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccch----------------------------h
Confidence 8754333332 445678888988777788887778999999998765221 1
Q ss_pred ecCCCCCceEEEEecCC-cEEEEeeCCCeEEEEEcCCCceeEE-EEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEe
Q 036585 169 VGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLST-YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWS 246 (304)
Q Consensus 169 ~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d 246 (304)
+.-|...|+.++++|.. .+|++++.|++.+|||++.-..... +-....|...|.++.|||.+..|++.+.|..|+|||
T Consensus 318 ~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~d 397 (498)
T KOG4328|consen 318 LRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFD 397 (498)
T ss_pred hhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEee
Confidence 22356689999999964 5788999999999999986544332 222225899999999999887899999999999999
Q ss_pred cC----CCceeeeeeccCC------CCceEEeCCCCcEEEEecCc--eEEeccCCcc
Q 036585 247 VR----SGKEVASWMSFDT------EPPVIKWAPGSLMFVTGSSE--LSFWIPDLSK 291 (304)
Q Consensus 247 ~~----~~~~~~~~~~~~~------~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~ 291 (304)
.. ...+...+. |.. .....+|.|+..++++|-.- |-|++-+.++
T Consensus 398 ss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 398 SSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred cccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence 83 334444442 322 23456799999999998876 8888887766
No 153
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.91 E-value=6.3e-23 Score=159.26 Aligned_cols=236 Identities=11% Similarity=0.206 Sum_probs=180.2
Q ss_pred eeEeecccCc-EEEEeeCCCeEEEEecCCc--ce--eeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCce
Q 036585 19 EILQSMEVGI-YLVTASDDESIRLYDVTAA--TC--LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK 93 (304)
Q Consensus 19 ~~i~~~~~~~-~l~~~~~d~~i~vw~~~~~--~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~ 93 (304)
..+.|..... .+++.+.|..+++|.-... +. +..+.+. .-.|++......++++|+. .+.|+|||++...
T Consensus 38 ~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~---~~~Vkiwdl~~kl 112 (673)
T KOG4378|consen 38 FSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQ---SGCVKIWDLRAKL 112 (673)
T ss_pred eeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCc---CceeeehhhHHHH
Confidence 3445554442 2334456778999974422 12 2222222 3455655556688999988 9999999999877
Q ss_pred eeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCC
Q 036585 94 YSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDI 173 (304)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (304)
+.+.+++|+..|+++.++-...+|++++..|.|.+..+.++.....+.... .
T Consensus 113 ~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s----------------------------g 164 (673)
T KOG4378|consen 113 IHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS----------------------------G 164 (673)
T ss_pred HhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCC----------------------------C
Confidence 888899999999999999999999999999999999999887776665331 2
Q ss_pred CCceEEEEecCCcE-EEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcC-CCcEEEEecCCCcEEEEecCCCc
Q 036585 174 SDANVVKFSNDGRL-MLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-EGMFVISGSGDGSVHAWSVRSGK 251 (304)
Q Consensus 174 ~~v~~~~~~~~~~~-l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~ 251 (304)
..|+-+.|+|..+. |.+++.+|.|.+||+....++..+.. .|..+...++|+| +..+|++.+.|..|.+||.+..+
T Consensus 165 qsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~--~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~ 242 (673)
T KOG4378|consen 165 QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASE--AHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA 242 (673)
T ss_pred CeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhh--hccCCcCcceecCCccceEEEecccceEEEeeccccc
Confidence 34567899998765 55688999999999988777666543 5888999999999 55678889999999999998777
Q ss_pred eeeeeeccCCCCceEEeCCCCcEEEEecCceEEeccCCc
Q 036585 252 EVASWMSFDTEPPVIKWAPGSLMFVTGSSELSFWIPDLS 290 (304)
Q Consensus 252 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~iw~~~~~ 290 (304)
....+. ...|.+.++|+++|.+|+.|....+|+-++++
T Consensus 243 s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R 280 (673)
T KOG4378|consen 243 STDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMR 280 (673)
T ss_pred ccceee-ecCCcceeeecCCceEEEeecCCceEEEEecc
Confidence 666664 56789999999999999999998555544443
No 154
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.91 E-value=7.2e-22 Score=145.59 Aligned_cols=241 Identities=13% Similarity=0.200 Sum_probs=180.1
Q ss_pred eEeecccCcEEEEeeCCCeEEEEecCCc-------c-----eeeeecc-cccceeEEEEc-------cCCCeEEEEecCC
Q 036585 20 ILQSMEVGIYLVTASDDESIRLYDVTAA-------T-----CLKTINS-KKYGVDLVCFT-------SHPTTVIYSSKNG 79 (304)
Q Consensus 20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~-------~-----~~~~~~~-~~~~v~~~~~~-------~~~~~l~~~~~~~ 79 (304)
...|+|||..|++-+.|..+++|++... . ...+++. ....|..-+|- |+..++++.+.
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr-- 131 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR-- 131 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc--
Confidence 3578999999999999999999997521 0 0011111 22457777775 56667777777
Q ss_pred CCCceEEEEccCceeeeeccc--ccc---cEEEEEEcCCCCEEEEcccCCeEEEEeC-CcceeeceEEEeccceeEecCC
Q 036585 80 WDESLRLLSLHDNKYSRYFKG--HHD---RVVLLSLCSSKDCFISGSLDRTVLLWDQ-RAEKCQGLLRVQGRPAAAYDDQ 153 (304)
Q Consensus 80 ~d~~i~vwd~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~ 153 (304)
+.-|++||.-+|+...++.+ |.+ ...+++|+|||.+|++|.. ..|+++|+ +.++--.........
T Consensus 132 -~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~------- 202 (406)
T KOG2919|consen 132 -DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKG------- 202 (406)
T ss_pred -cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhcc-------
Confidence 99999999999998777653 444 3468999999999998764 78999998 544432222110000
Q ss_pred CeEEEecCCCeEEEEecCCCCCceEEEEecCC-cEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcE
Q 036585 154 GLVFGYEKGPLDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF 232 (304)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 232 (304)
-.+..+.+.+++|+|.. +.+++++...++-||.-..+.++..+- +|.+.|+.++|.++|+.
T Consensus 203 ---------------k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg---gh~gGvThL~~~edGn~ 264 (406)
T KOG2919|consen 203 ---------------KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG---GHGGGVTHLQWCEDGNK 264 (406)
T ss_pred ---------------cccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec---ccCCCeeeEEeccCcCe
Confidence 01344678899999955 589999999999999988888888877 79999999999999999
Q ss_pred EEEecC-CCcEEEEecCC-CceeeeeeccCC-CCceEEe--CCCCcEEEEecCc--eEEeccCC
Q 036585 233 VISGSG-DGSVHAWSVRS-GKEVASWMSFDT-EPPVIKW--APGSLMFVTGSSE--LSFWIPDL 289 (304)
Q Consensus 233 l~~~~~-dg~i~v~d~~~-~~~~~~~~~~~~-~i~~~~~--~~~~~~l~s~~~d--~~iw~~~~ 289 (304)
|++|.. |-.|-.||++. ..++..+..|.. .-..|.| .|++++|++|+.| |++|+.+.
T Consensus 265 lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 265 LFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred ecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 999974 66799999986 456777777765 3444554 6889999999888 99998854
No 155
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=7.2e-23 Score=160.97 Aligned_cols=249 Identities=20% Similarity=0.246 Sum_probs=184.4
Q ss_pred eeecceeeEeec---ccCcEEEEeeCCCeEEEEecCC--------cceeeeecccccceeEEEEccCCCeEEEEecCCCC
Q 036585 13 SLELSEEILQSM---EVGIYLVTASDDESIRLYDVTA--------ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD 81 (304)
Q Consensus 13 ~~~~~~~~i~~~---~~~~~l~~~~~d~~i~vw~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d 81 (304)
++..|...++.+ +....|++++.||.+++|+++. -+++.++.+|.++|.|+++.+++..+++|+. |
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~---D 365 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGI---D 365 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeecc---C
Confidence 444555555444 4467899999999999999942 3578899999999999999999999999999 9
Q ss_pred CceEEEEccCc----------eeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEec
Q 036585 82 ESLRLLSLHDN----------KYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYD 151 (304)
Q Consensus 82 ~~i~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 151 (304)
|+|+.|++... .....+.+|++.|+.+++|+....|++++.||+++.|+...... ..+...
T Consensus 366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~-------- 436 (577)
T KOG0642|consen 366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEP-------- 436 (577)
T ss_pred ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCc--------
Confidence 99999976532 12345779999999999999988999999999999999876554 222111
Q ss_pred CCCeEEEecCCCeEEEEecCCCCCceEEEEecCC-cEEEEeeCCCeEEEEEcCCCceeEEEEeCC----CCCCcceEEEE
Q 036585 152 DQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKP----VSRNSTLEASF 226 (304)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~----~~~~~i~~~~~ 226 (304)
........+.+-... ..+++...-+.-.++++........+.... .....+..+.+
T Consensus 437 -------------------~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs 497 (577)
T KOG0642|consen 437 -------------------KEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVS 497 (577)
T ss_pred -------------------cccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEe
Confidence 011222334443322 222222233333344444444444443211 11245677889
Q ss_pred cCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCccc
Q 036585 227 SPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKL 292 (304)
Q Consensus 227 s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~ 292 (304)
+|...+.+++..|+.|+++|..+++++.....|...++++++.|+|.+|++++.| +++|..+....
T Consensus 498 ~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 498 HPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred cCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchhe
Confidence 9999999999999999999999999999999999999999999999999999999 88888765543
No 156
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.90 E-value=2.3e-22 Score=161.65 Aligned_cols=260 Identities=16% Similarity=0.219 Sum_probs=200.0
Q ss_pred eeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeec
Q 036585 19 EILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYF 98 (304)
Q Consensus 19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~ 98 (304)
.-+.+-|||..|+.+..+ .+.+||.+.|.+++++++|++.|+|++|+.+|+.+++|+. |..|.+|+..-.- +..+
T Consensus 16 ~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~a---DK~VI~W~~klEG-~LkY 90 (1081)
T KOG1538|consen 16 NDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSA---DKSVIIWTSKLEG-ILKY 90 (1081)
T ss_pred heeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCC---ceeEEEecccccc-eeee
Confidence 447888999888887654 6999999999999999999999999999999999999999 9999999864322 2223
Q ss_pred ccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEE--EecCCCeEEEE--------
Q 036585 99 KGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVF--GYEKGPLDIFS-------- 168 (304)
Q Consensus 99 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-------- 168 (304)
.|.+.|.|+.|+|-.+.|++++-. ..-+|..+................+|..+|.++ +..+|.+.+.+
T Consensus 91 -SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~ 168 (1081)
T KOG1538|consen 91 -SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVK 168 (1081)
T ss_pred -ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceE
Confidence 489999999999988888888763 466887765544433333333456677777544 44555555543
Q ss_pred ---ecCCCCCceEEEEecCC-----cEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCC
Q 036585 169 ---VGGDISDANVVKFSNDG-----RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG 240 (304)
Q Consensus 169 ---~~~~~~~v~~~~~~~~~-----~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 240 (304)
..+..++|.+++|+|.. ..+++.....++.+|.+. |+.+..-. .......|+.+.|+|.+++.|+.|+
T Consensus 169 I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r---~L~FdP~CisYf~NGEy~LiGGsdk 244 (1081)
T KOG1538|consen 169 IERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDR---ALNFDPCCISYFTNGEYILLGGSDK 244 (1081)
T ss_pred EeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccc---cCCCCchhheeccCCcEEEEccCCC
Confidence 34567899999999963 578888888888888874 44444322 2445567899999999999999999
Q ss_pred cEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCc
Q 036585 241 SVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLS 290 (304)
Q Consensus 241 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~ 290 (304)
.+++|- +.|-.+.++......|+.++..|++++++.|+.| +--|++-..
T Consensus 245 ~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 245 QLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFS 295 (1081)
T ss_pred ceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHh
Confidence 999996 6777888887788899999999999999999999 444544333
No 157
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=1.1e-22 Score=156.11 Aligned_cols=213 Identities=16% Similarity=0.213 Sum_probs=164.2
Q ss_pred ecCCcceeeeecccccceeEEEEccCCC--eEEEEecCCCCCceEEEEccCc----eeeeecccccccEEEEEEcC-CCC
Q 036585 43 DVTAATCLKTINSKKYGVDLVCFTSHPT--TVIYSSKNGWDESLRLLSLHDN----KYSRYFKGHHDRVVLLSLCS-SKD 115 (304)
Q Consensus 43 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~~~~d~~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~-~~~ 115 (304)
|+.+-.....++.+.+.|.+++|+|..+ .+++|.. -|.|-+||+.+. ..+..+..|..+|.++.|+| +..
T Consensus 172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK---~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s 248 (498)
T KOG4328|consen 172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDK---GGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTS 248 (498)
T ss_pred ccccceecceeEecccceEEEEecccCcceEEEEccC---CCcEEEEecCCCCCccCceEEeccCCccccceEecCCChh
Confidence 3334445556667888999999999765 4555555 899999999532 23566778999999999999 556
Q ss_pred EEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCC
Q 036585 116 CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEG 195 (304)
Q Consensus 116 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 195 (304)
.+++.+.||+|+.-|++.......+... ........+.|+.+...++.+..=|
T Consensus 249 ~i~ssSyDGtiR~~D~~~~i~e~v~s~~---------------------------~d~~~fs~~d~~~e~~~vl~~~~~G 301 (498)
T KOG4328|consen 249 QIYSSSYDGTIRLQDFEGNISEEVLSLD---------------------------TDNIWFSSLDFSAESRSVLFGDNVG 301 (498)
T ss_pred heeeeccCceeeeeeecchhhHHHhhcC---------------------------ccceeeeeccccCCCccEEEeeccc
Confidence 8999999999999999877655444322 1223456688888888888888888
Q ss_pred eEEEEEcCCCce-eEEEEeCCCCCCcceEEEEcCCC-cEEEEecCCCcEEEEecCCCcee----eeeeccCCCCceEEeC
Q 036585 196 HIHVLDSFRGTL-LSTYNVKPVSRNSTLEASFSPEG-MFVISGSGDGSVHAWSVRSGKEV----ASWMSFDTEPPVIKWA 269 (304)
Q Consensus 196 ~i~~~d~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~v~d~~~~~~~----~~~~~~~~~i~~~~~~ 269 (304)
...+||++++.. ...+. .|...|..++++|.. .+||+++.|++.+|||++..... -....|...|.+..||
T Consensus 302 ~f~~iD~R~~~s~~~~~~---lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFS 378 (498)
T KOG4328|consen 302 NFNVIDLRTDGSEYENLR---LHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFS 378 (498)
T ss_pred ceEEEEeecCCccchhhh---hhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEc
Confidence 999999998765 34444 477799999999954 56899999999999999864332 2335699999999999
Q ss_pred CCCcEEEEecCc--eEEeccC
Q 036585 270 PGSLMFVTGSSE--LSFWIPD 288 (304)
Q Consensus 270 ~~~~~l~s~~~d--~~iw~~~ 288 (304)
|.+-.|++.+.| |+||+-.
T Consensus 379 Ps~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 379 PSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred CCCCceEeeccCCceEEeecc
Confidence 988778888888 9999873
No 158
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.90 E-value=4.6e-22 Score=144.43 Aligned_cols=235 Identities=13% Similarity=0.235 Sum_probs=173.3
Q ss_pred Eeeccc-CcEEEEeeCC-------CeEEEEecCCc---------ceeeeec-ccccceeEEEEccCCCeEEEEecCCCCC
Q 036585 21 LQSMEV-GIYLVTASDD-------ESIRLYDVTAA---------TCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDE 82 (304)
Q Consensus 21 i~~~~~-~~~l~~~~~d-------~~i~vw~~~~~---------~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~d~ 82 (304)
++.+|. .++|+|+..+ -.+.||.+... +++..+. .+-+.+.|+.|.|++..+++-. |.
T Consensus 69 las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~----dn 144 (370)
T KOG1007|consen 69 LASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD----DN 144 (370)
T ss_pred hhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec----cC
Confidence 344554 4566665442 23679987632 3344454 3456899999999999999988 89
Q ss_pred ceEEEEccCcee-eeecc-----cccccEEEEEEcC--CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCC
Q 036585 83 SLRLLSLHDNKY-SRYFK-----GHHDRVVLLSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQG 154 (304)
Q Consensus 83 ~i~vwd~~~~~~-~~~~~-----~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 154 (304)
.|.+|++..+.. +..+. ++....++-+|+| +++.+++. .|+++..||+++......+.
T Consensus 145 ~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~------------- 210 (370)
T KOG1007|consen 145 NIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIE------------- 210 (370)
T ss_pred ceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchh-------------
Confidence 999999987654 33222 3566788999998 77777765 47999999999887665554
Q ss_pred eEEEecCCCeEEEEecCCCCCceEEEEecCCc-EEEEeeCCCeEEEEEcCCC-ceeEEEEeCCCCCCcceEEEEcC-CCc
Q 036585 155 LVFGYEKGPLDIFSVGGDISDANVVKFSNDGR-LMLLTTMEGHIHVLDSFRG-TLLSTYNVKPVSRNSTLEASFSP-EGM 231 (304)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~~~~i~~~~~s~-~~~ 231 (304)
..|...|..+.|+|+.+ +|++++.||.|++||++.- .++.++. +|...+.++.|+| ..+
T Consensus 211 ---------------dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~---~HsHWvW~VRfn~~hdq 272 (370)
T KOG1007|consen 211 ---------------DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP---GHSHWVWAVRFNPEHDQ 272 (370)
T ss_pred ---------------hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC---CCceEEEEEEecCccce
Confidence 24667889999999876 5777899999999999854 3455555 7999999999999 456
Q ss_pred EEEEecCCCcEEEEecCCCc-----------------------------eeeeeeccCCCCceEEeCCCCc-EEEEecCc
Q 036585 232 FVISGSGDGSVHAWSVRSGK-----------------------------EVASWMSFDTEPPVIKWAPGSL-MFVTGSSE 281 (304)
Q Consensus 232 ~l~~~~~dg~i~v~d~~~~~-----------------------------~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~d 281 (304)
++++|+.|..|.+|...+-. .+.++..|...|++++|+.-.. .+|+-+.|
T Consensus 273 LiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYD 352 (370)
T KOG1007|consen 273 LILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYD 352 (370)
T ss_pred EEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccC
Confidence 88999999999999653210 2346678999999999998555 66788888
Q ss_pred eEEeccCCcc
Q 036585 282 LSFWIPDLSK 291 (304)
Q Consensus 282 ~~iw~~~~~~ 291 (304)
.|+-.-+..+
T Consensus 353 GRviIs~V~r 362 (370)
T KOG1007|consen 353 GRVIISSVPR 362 (370)
T ss_pred ceEEeecCCh
Confidence 6665544433
No 159
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.6e-22 Score=154.61 Aligned_cols=200 Identities=18% Similarity=0.233 Sum_probs=158.9
Q ss_pred ceeEEEEcc-------CCCeEEEEecCCCCCceEEEEccCce---ee------------------eecccccccEEEEEE
Q 036585 59 GVDLVCFTS-------HPTTVIYSSKNGWDESLRLLSLHDNK---YS------------------RYFKGHHDRVVLLSL 110 (304)
Q Consensus 59 ~v~~~~~~~-------~~~~l~~~~~~~~d~~i~vwd~~~~~---~~------------------~~~~~~~~~v~~~~~ 110 (304)
...|++|.. .|++++.|+. |..|.|||+.-.. +. ..-.+|++.|.++.|
T Consensus 175 fPLC~ewld~~~~~~~~gNyvAiGtm---dp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~ 251 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGNYVAIGTM---DPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSW 251 (463)
T ss_pred cchhhhhhhcCCCCCCCcceEEEecc---CceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHh
Confidence 345666653 3579999998 9999999985211 00 112368899999999
Q ss_pred cCC-CCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecC-CcEE
Q 036585 111 CSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSND-GRLM 188 (304)
Q Consensus 111 ~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l 188 (304)
+.. .+.|++|+.|.+|++||+.++++...+. .|...|.++.|+|. ..+|
T Consensus 252 n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~-----------------------------~~~k~Vq~l~wh~~~p~~L 302 (463)
T KOG0270|consen 252 NRNFRNVLASGSADKTVKLWDVDTGKPKSSIT-----------------------------HHGKKVQTLEWHPYEPSVL 302 (463)
T ss_pred ccccceeEEecCCCceEEEEEcCCCCcceehh-----------------------------hcCCceeEEEecCCCceEE
Confidence 864 4589999999999999999999988775 36678999999995 5789
Q ss_pred EEeeCCCeEEEEEcCCCce-eEEEEeCCCCCCcceEEEEcCCC-cEEEEecCCCcEEEEecCCC-ceeeeeeccCCCCce
Q 036585 189 LLTTMEGHIHVLDSFRGTL-LSTYNVKPVSRNSTLEASFSPEG-MFVISGSGDGSVHAWSVRSG-KEVASWMSFDTEPPV 265 (304)
Q Consensus 189 ~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~i~~ 265 (304)
++|+.|+++.+.|.+.... -..++ ..+.|-.++|.|.. ..++++..||.|+-+|+++. +++.+++.|.++|.+
T Consensus 303 LsGs~D~~V~l~D~R~~~~s~~~wk----~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISg 378 (463)
T KOG0270|consen 303 LSGSYDGTVALKDCRDPSNSGKEWK----FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISG 378 (463)
T ss_pred EeccccceEEeeeccCccccCceEE----eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcce
Confidence 9999999999999995322 23333 45788899999954 56778889999999999875 889999999999999
Q ss_pred EEeCCCC-cEEEEecCc--eEEeccCCccccc
Q 036585 266 IKWAPGS-LMFVTGSSE--LSFWIPDLSKLGA 294 (304)
Q Consensus 266 ~~~~~~~-~~l~s~~~d--~~iw~~~~~~~~~ 294 (304)
|++++.- .++++++.| +++|+++....+.
T Consensus 379 l~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~ 410 (463)
T KOG0270|consen 379 LSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS 410 (463)
T ss_pred EEecCCCCcceeeccccceEEEEeecCCCCcc
Confidence 9999865 467888888 9999998766543
No 160
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=7.8e-21 Score=134.93 Aligned_cols=240 Identities=10% Similarity=0.095 Sum_probs=177.0
Q ss_pred eecccCcEEEEeeCCCeEEEEecCC---------c-ceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccC
Q 036585 22 QSMEVGIYLVTASDDESIRLYDVTA---------A-TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD 91 (304)
Q Consensus 22 ~~~~~~~~l~~~~~d~~i~vw~~~~---------~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~ 91 (304)
+++|.+++|+.|..+|.|-+..+++ + ..+...++|.++++.++|. ..+|++++ ||.|+=|..+.
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g----dG~V~gw~W~E 90 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG----DGLVYGWEWNE 90 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc----CceEEEeeehh
Confidence 5678899999999999999998763 2 2344558899999999996 66788887 99999997754
Q ss_pred cee------eeec--ccc-----cccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEE
Q 036585 92 NKY------SRYF--KGH-----HDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFG 158 (304)
Q Consensus 92 ~~~------~~~~--~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (304)
... .... .-| -..|.++...|..+-++.++.|+.++-||+++++..+.++
T Consensus 91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r----------------- 153 (325)
T KOG0649|consen 91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR----------------- 153 (325)
T ss_pred hhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc-----------------
Confidence 321 1111 112 2368889999977777777799999999999999888776
Q ss_pred ecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCC-------CCCCcceEEEEcCCCc
Q 036585 159 YEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP-------VSRNSTLEASFSPEGM 231 (304)
Q Consensus 159 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-------~~~~~i~~~~~s~~~~ 231 (304)
+|+..+.++.--.....+++|+.||++++||+++++.+..+.... .....|.+++- +..
T Consensus 154 ------------GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~ed 219 (325)
T KOG0649|consen 154 ------------GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NED 219 (325)
T ss_pred ------------CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCc
Confidence 788899999885555569999999999999999999988876321 12234555554 566
Q ss_pred EEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecC-c-eEEeccCCccccccccCCCCC
Q 036585 232 FVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSS-E-LSFWIPDLSKLGAYVGRNRGC 302 (304)
Q Consensus 232 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-d-~~iw~~~~~~~~~~~~~~~g~ 302 (304)
+|++|+ ...+.+|++++.++...++ ..+++..+.|..| .+++++. + +.-|.++...-........+|
T Consensus 220 WlvCGg-Gp~lslwhLrsse~t~vfp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c 288 (325)
T KOG0649|consen 220 WLVCGG-GPKLSLWHLRSSESTCVFP-IPARVHLVDFVDD--CVLIGGEGNHVQSYTLNGVLQANIPVESTAC 288 (325)
T ss_pred eEEecC-CCceeEEeccCCCceEEEe-cccceeEeeeecc--eEEEeccccceeeeeeccEEEEeccCCccce
Confidence 888886 4569999999999887775 5567788888544 4455553 3 888887765544444444444
No 161
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.90 E-value=3.2e-22 Score=143.41 Aligned_cols=251 Identities=10% Similarity=0.127 Sum_probs=180.7
Q ss_pred eeeeecceeeEeeccc--CcEEEEeeCCCeEEEEecCCcceeeeec-ccccceeEEEEccCCCeEEEEecCCCCCceEEE
Q 036585 11 KVSLELSEEILQSMEV--GIYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 87 (304)
Q Consensus 11 ~~~~~~~~~~i~~~~~--~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vw 87 (304)
...++.|...+.+... ..+|.+|..-|.|++|++++.+.+..++ .+...|+.+.--|+ ..+.+-+. |..+.+|
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgR---d~~L~lw 82 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGR---DPLLILW 82 (323)
T ss_pred eeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCC---CceEEEE
Confidence 3445566666555433 5679999999999999999999888888 56778888888887 45666666 9999999
Q ss_pred EccCceeeee--------------c---------------------------------------ccccccEEEEEEcC-C
Q 036585 88 SLHDNKYSRY--------------F---------------------------------------KGHHDRVVLLSLCS-S 113 (304)
Q Consensus 88 d~~~~~~~~~--------------~---------------------------------------~~~~~~v~~~~~~~-~ 113 (304)
++.-+..+.. + .+..+.+.+..+.. .
T Consensus 83 ~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c 162 (323)
T KOG0322|consen 83 TIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHAC 162 (323)
T ss_pred EccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccc
Confidence 9865321100 0 01123445554322 2
Q ss_pred CC--EEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEe
Q 036585 114 KD--CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLT 191 (304)
Q Consensus 114 ~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 191 (304)
+. ++++|..+|.+.+||+.++.....++..... +.....|..+|.++.|.+.-..=++|
T Consensus 163 ~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv-------------------~~~~ash~qpvlsldyas~~~rGisg 223 (323)
T KOG0322|consen 163 GSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKV-------------------ESPNASHKQPVLSLDYASSCDRGISG 223 (323)
T ss_pred cceEEEEEeccCCeEEEEEccCCceeecccccccc-------------------ccchhhccCcceeeeechhhcCCcCC
Confidence 22 4667778889999998877443333211111 12233578899999998765556777
Q ss_pred eCCCeEEEEEcCCC--ce--eEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEE
Q 036585 192 TMEGHIHVLDSFRG--TL--LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIK 267 (304)
Q Consensus 192 ~~dg~i~~~d~~~~--~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~ 267 (304)
+.+-.+..|++... .. ...+. -.+-.+..+.+-||++.+|+++.|+.||||+.++..++..++.|.+.|++++
T Consensus 224 ga~dkl~~~Sl~~s~gslq~~~e~~---lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vA 300 (323)
T KOG0322|consen 224 GADDKLVMYSLNHSTGSLQIRKEIT---LKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVA 300 (323)
T ss_pred CccccceeeeeccccCcccccceEE---ecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEE
Confidence 77778888887532 22 22222 2344577788999999999999999999999999999999999999999999
Q ss_pred eCCCCcEEEEecCc--eEEecc
Q 036585 268 WAPGSLMFVTGSSE--LSFWIP 287 (304)
Q Consensus 268 ~~~~~~~l~s~~~d--~~iw~~ 287 (304)
|+|+...+|.++.| |.+|++
T Consensus 301 fspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 301 FSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eCCCCchhhhccCCceEEeeec
Confidence 99999999999999 888975
No 162
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.3e-22 Score=147.62 Aligned_cols=225 Identities=21% Similarity=0.307 Sum_probs=167.4
Q ss_pred cEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEcc--CCCeEEEEecCCCCCceEEEEccCceee--eeccccc-
Q 036585 28 IYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTS--HPTTVIYSSKNGWDESLRLLSLHDNKYS--RYFKGHH- 102 (304)
Q Consensus 28 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~d~~i~vwd~~~~~~~--~~~~~~~- 102 (304)
..+|++-..|+|++||..+++.+..++++...++.+.|.. .+..+.+++. ||+|++||++..... ..+..+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ss---DG~Vr~wD~Rs~~e~a~~~~~~~~~ 117 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSS---DGTVRLWDIRSQAESARISWTQQSG 117 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEecc---CCeEEEEEeecchhhhheeccCCCC
Confidence 6788898999999999999999999999999999999987 4567788887 999999999986543 3344455
Q ss_pred ccEEEEEEcCCCCEEEEcc----cCCeEEEEeCCccee-eceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCce
Q 036585 103 DRVVLLSLCSSKDCFISGS----LDRTVLLWDQRAEKC-QGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDAN 177 (304)
Q Consensus 103 ~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 177 (304)
.+..+++..-+++.+++|. .+-.+.+||+|..+. +..+. +.|...|+
T Consensus 118 ~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~----------------------------eSH~DDVT 169 (376)
T KOG1188|consen 118 TPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLN----------------------------ESHNDDVT 169 (376)
T ss_pred CcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhh----------------------------hhccCcce
Confidence 4677787776777888875 366899999998766 33332 35889999
Q ss_pred EEEEecC-CcEEEEeeCCCeEEEEEcCCCc----eeEEEEeCCCCCCcceEEEEcCCC-cEEEEecCCCcEEEEecCCCc
Q 036585 178 VVKFSND-GRLMLLTTMEGHIHVLDSFRGT----LLSTYNVKPVSRNSTLEASFSPEG-MFVISGSGDGSVHAWSVRSGK 251 (304)
Q Consensus 178 ~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~----~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~v~d~~~~~ 251 (304)
+++|+|+ .+.|++|+.||-|.+||+.... +...+. +...|..+.|..++ +.|.+-+......+|+++.+.
T Consensus 170 ~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN----~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 170 QLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN----HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred eEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc----ccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 9999995 5789999999999999986542 122222 55567777777655 335566666667777665443
Q ss_pred e-------------------------------------------------------------eeeeec-cCCCCceEEeC
Q 036585 252 E-------------------------------------------------------------VASWMS-FDTEPPVIKWA 269 (304)
Q Consensus 252 ~-------------------------------------------------------------~~~~~~-~~~~i~~~~~~ 269 (304)
+ +..+.+ |..-|+++.|.
T Consensus 246 ~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~ 325 (376)
T KOG1188|consen 246 EETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFD 325 (376)
T ss_pred hhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhh
Confidence 1 112222 44556778888
Q ss_pred CCCcEEEEecCc--eEEecc
Q 036585 270 PGSLMFVTGSSE--LSFWIP 287 (304)
Q Consensus 270 ~~~~~l~s~~~d--~~iw~~ 287 (304)
..+.++.||++| +.+|..
T Consensus 326 ~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 326 VKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cccceeeccCCCceEEEEec
Confidence 888899999999 888873
No 163
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.89 E-value=4.1e-21 Score=145.47 Aligned_cols=262 Identities=16% Similarity=0.187 Sum_probs=184.4
Q ss_pred eeEeecccCcEEEEeeCCCeEEEEecC--------C--------cceeeeecccccceeEEEEccCCCeEEEEecCCCCC
Q 036585 19 EILQSMEVGIYLVTASDDESIRLYDVT--------A--------ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 82 (304)
Q Consensus 19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~ 82 (304)
+.+.|+++|++||+|+.+|.|.+|-.. + ....+.+.+|...+..++|+|++.++++++. |.
T Consensus 69 N~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~---dn 145 (434)
T KOG1009|consen 69 NVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSV---DN 145 (434)
T ss_pred EEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeec---cc
Confidence 457889999999999999999999765 2 2344667789999999999999999999998 99
Q ss_pred ceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCC
Q 036585 83 SLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKG 162 (304)
Q Consensus 83 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (304)
.+++||+..|+....+..|...+..++|.|-++++++-+.|...+.+.+...+............-...+ ....
T Consensus 146 s~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~------~e~~ 219 (434)
T KOG1009|consen 146 SVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNE------REGK 219 (434)
T ss_pred eEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCC------CCcc
Confidence 9999999999999999999999999999999999999999998888777655544433321111101100 0111
Q ss_pred CeEEEEecCCCCCceEEEEecCCcEEEEeeC----CC-----eEEEEEcCC-CceeEEEEeCCCCCCcceEEEEcC----
Q 036585 163 PLDIFSVGGDISDANVVKFSNDGRLMLLTTM----EG-----HIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSP---- 228 (304)
Q Consensus 163 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg-----~i~~~d~~~-~~~~~~~~~~~~~~~~i~~~~~s~---- 228 (304)
..+++.-+.-..-...++|+|+|.++++.+. .+ ..++|+-.. .++...+. ....+...+.|+|
T Consensus 220 s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp---~~~k~~lavr~~pVy~e 296 (434)
T KOG1009|consen 220 STRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLP---SPKKPALAVRFSPVYYE 296 (434)
T ss_pred eeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecC---CCCcceEEEEeeeeEEE
Confidence 1223333333345567899999999887542 22 234444321 12222222 3344455555554
Q ss_pred --------------CCcEEEEecCCCcEEEEecCCCceeeee-eccCCCCceEEeCCCCcEEEEecCc--eEEeccCCcc
Q 036585 229 --------------EGMFVISGSGDGSVHAWSVRSGKEVASW-MSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSK 291 (304)
Q Consensus 229 --------------~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~ 291 (304)
.+-.+|.++ .+.|+|||.++..++... .-|-.+|+.++|++||.+|+..|.| ..+-.++...
T Consensus 297 lrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 297 LRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred eccccccccccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence 222344554 557999999998887666 5588999999999999999999999 5665555554
Q ss_pred cc
Q 036585 292 LG 293 (304)
Q Consensus 292 ~~ 293 (304)
+.
T Consensus 376 lg 377 (434)
T KOG1009|consen 376 LG 377 (434)
T ss_pred cc
Confidence 44
No 164
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=9.7e-22 Score=149.59 Aligned_cols=204 Identities=16% Similarity=0.138 Sum_probs=158.8
Q ss_pred cceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceee
Q 036585 16 LSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYS 95 (304)
Q Consensus 16 ~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~ 95 (304)
+.+..+++..+|..|++++.||++|||+..+...+.....|...|.++.|+||++.|++.+. | ..+||+.+++..+
T Consensus 145 g~~k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~---d-~~~VW~~~~g~~~ 220 (398)
T KOG0771|consen 145 GQQKVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGA---D-SARVWSVNTGAAL 220 (398)
T ss_pred CcceEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecC---C-ceEEEEeccCchh
Confidence 34578999999999999999999999998888888888889999999999999999999997 8 9999999999766
Q ss_pred eeccc--ccccEEEEEEcCCC---C--EEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEE
Q 036585 96 RYFKG--HHDRVVLLSLCSSK---D--CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFS 168 (304)
Q Consensus 96 ~~~~~--~~~~v~~~~~~~~~---~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (304)
..... -......+.|+.++ . .++....-+.|+.||+.....-..++...
T Consensus 221 a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~------------------------ 276 (398)
T KOG0771|consen 221 ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRK------------------------ 276 (398)
T ss_pred hhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhh------------------------
Confidence 65542 22356778888766 2 23333445567776654332211111000
Q ss_pred ecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecC
Q 036585 169 VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVR 248 (304)
Q Consensus 169 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~ 248 (304)
.-.....|++++.+++|++++.|+.||.|-+++..+.+.....+. .|...|+.+.|+||.+++++.+.+....|..+.
T Consensus 277 ~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~--aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 277 KIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKE--AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred hhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehh--hheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 001224789999999999999999999999999988776665553 688899999999999999999999999888775
Q ss_pred C
Q 036585 249 S 249 (304)
Q Consensus 249 ~ 249 (304)
-
T Consensus 355 v 355 (398)
T KOG0771|consen 355 V 355 (398)
T ss_pred e
Confidence 3
No 165
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=2.3e-20 Score=136.80 Aligned_cols=213 Identities=15% Similarity=0.261 Sum_probs=159.1
Q ss_pred cccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCc----eeeeecccccccEEEEEEcC--CCCEEEEcccCCeEE
Q 036585 54 NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN----KYSRYFKGHHDRVVLLSLCS--SKDCFISGSLDRTVL 127 (304)
Q Consensus 54 ~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~ 127 (304)
.+|..-|+++.|.+.|+++++++. |++++|||..+. .+....+.|.+.|..+.|.+ -|+.+++++.|+++.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSs---Dq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~ 86 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSS---DQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS 86 (361)
T ss_pred cCCcceeeeeeecccCceeeeccC---CCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence 368888999999999999999999 999999997543 35566788999999999975 588999999999999
Q ss_pred EEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecC--CcEEEEeeCCCeEEEEEcCCC
Q 036585 128 LWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSND--GRLMLLTTMEGHIHVLDSFRG 205 (304)
Q Consensus 128 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~ 205 (304)
||.-..... ..++. .=++.-.+....+.|+.+.|.|. |-.|++++.||.++||+....
T Consensus 87 iWEE~~~~~----~~~~~----------------~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp 146 (361)
T KOG2445|consen 87 IWEEQEKSE----EAHGR----------------RWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDP 146 (361)
T ss_pred eeeeccccc----ccccc----------------eeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCc
Confidence 997531111 10000 00112223356678999999995 678999999999999986543
Q ss_pred ------ceeEEEE----eCCCCCCcceEEEEcC---CCcEEEEecCC-----CcEEEEecCCCc----eeeeeeccCCCC
Q 036585 206 ------TLLSTYN----VKPVSRNSTLEASFSP---EGMFVISGSGD-----GSVHAWSVRSGK----EVASWMSFDTEP 263 (304)
Q Consensus 206 ------~~~~~~~----~~~~~~~~i~~~~~s~---~~~~l~~~~~d-----g~i~v~d~~~~~----~~~~~~~~~~~i 263 (304)
++...++ .+..+..+..|+.|+| ...+||.|+.+ +.++||...... .+.++.+|..+|
T Consensus 147 ~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI 226 (361)
T KOG2445|consen 147 MNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPI 226 (361)
T ss_pred cccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcc
Confidence 2222222 1112556778899998 34678888765 478999875432 366778999999
Q ss_pred ceEEeCCC----CcEEEEecCc-eEEeccCC
Q 036585 264 PVIKWAPG----SLMFVTGSSE-LSFWIPDL 289 (304)
Q Consensus 264 ~~~~~~~~----~~~l~s~~~d-~~iw~~~~ 289 (304)
+.|+|.|+ ..+||+++.| ++||.+..
T Consensus 227 ~di~wAPn~Gr~y~~lAvA~kDgv~I~~v~~ 257 (361)
T KOG2445|consen 227 RDISWAPNIGRSYHLLAVATKDGVRIFKVKV 257 (361)
T ss_pred eeeeeccccCCceeeEEEeecCcEEEEEEee
Confidence 99999995 3689999999 99998763
No 166
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.88 E-value=1.3e-22 Score=166.51 Aligned_cols=265 Identities=18% Similarity=0.278 Sum_probs=188.9
Q ss_pred eeecceeeEee---cccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEc
Q 036585 13 SLELSEEILQS---MEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 89 (304)
Q Consensus 13 ~~~~~~~~i~~---~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~ 89 (304)
.+.+|-.+|-| ...|.++++|+.|..++||..++..++....+|.+.++.++.+.+...+++++. |..|++|.+
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~---D~vIrvWrl 261 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASN---DKVIRVWRL 261 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhccc---CceEEEEec
Confidence 34566655543 345999999999999999999999999999999999999999999999999998 999999999
Q ss_pred cCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeece---EEEeccc---eeEecCC--CeEEEecC
Q 036585 90 HDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL---LRVQGRP---AAAYDDQ--GLVFGYEK 161 (304)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~---~~~~~~~--~~~~~~~~ 161 (304)
.++.++..+.+|++.|++++|+|-. +.+.||++++||.+-...... ....... .+.+..+ ....+..+
T Consensus 262 ~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d 337 (1113)
T KOG0644|consen 262 PDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRD 337 (1113)
T ss_pred CCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCC
Confidence 9999999999999999999999954 778999999999881111111 0000000 1111111 12223333
Q ss_pred CCeEEEEecC---CCCCceEEEEecC-CcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcC-CCcEEEEe
Q 036585 162 GPLDIFSVGG---DISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-EGMFVISG 236 (304)
Q Consensus 162 ~~~~~~~~~~---~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~ 236 (304)
+....|.+.. +...+.-+.++.+ ..+.+++-.+-.+++|++.+|...+... +|...+..+.++| +.....++
T Consensus 338 ~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~---ghsd~~yvLd~Hpfn~ri~msa 414 (1113)
T KOG0644|consen 338 GEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM---GHSDEVYVLDVHPFNPRIAMSA 414 (1113)
T ss_pred cccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc---ccccceeeeeecCCCcHhhhhc
Confidence 3333333221 1111111111111 1345555567789999999998888877 7889999999999 55566788
Q ss_pred cCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCceEEecc
Q 036585 237 SGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSELSFWIP 287 (304)
Q Consensus 237 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~iw~~ 287 (304)
+.||...|||+-.+.+++.+....+.+..-+||+||..++....-..++.+
T Consensus 415 g~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 415 GYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred cCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEe
Confidence 999999999999888877664334567777999999887765444445444
No 167
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.88 E-value=3.6e-19 Score=142.38 Aligned_cols=256 Identities=11% Similarity=0.176 Sum_probs=170.1
Q ss_pred EEEeeCCCeEEEEecCC-cc--eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccC-cee--eeecccccc
Q 036585 30 LVTASDDESIRLYDVTA-AT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-NKY--SRYFKGHHD 103 (304)
Q Consensus 30 l~~~~~d~~i~vw~~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~-~~~--~~~~~~~~~ 103 (304)
+++...++.|++|++.+ ++ .+..+. +.+....++++|++++|++++.. ++.|.+|++.. ++. +.... ..+
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~--~~~i~~~~~~~~g~l~~~~~~~-~~~ 80 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRP--EFRVLSYRIADDGALTFAAESP-LPG 80 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECC--CCcEEEEEECCCCceEEeeeec-CCC
Confidence 34446789999999964 33 445454 23567789999999999887653 88999999973 332 22222 233
Q ss_pred cEEEEEEcCCCCEEEEccc-CCeEEEEeCCcce-eeceEE---E-eccceeEecCCCeEE---EecCCCeEEEEecCC--
Q 036585 104 RVVLLSLCSSKDCFISGSL-DRTVLLWDQRAEK-CQGLLR---V-QGRPAAAYDDQGLVF---GYEKGPLDIFSVGGD-- 172 (304)
Q Consensus 104 ~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~-~~~~~~---~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-- 172 (304)
....+.++|+++++++++. ++.|.+|++++.. ...... . .....+.+++++..+ ....+.+.+|++...
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH 160 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc
Confidence 5678999999998887764 7899999997432 111111 1 123345678876333 345577888887542
Q ss_pred -------------CCCceEEEEecCCcEEEEeeC-CCeEEEEEcCC--Cce--eEEEEeCCC---CCCcceEEEEcCCCc
Q 036585 173 -------------ISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFR--GTL--LSTYNVKPV---SRNSTLEASFSPEGM 231 (304)
Q Consensus 173 -------------~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~--~~~--~~~~~~~~~---~~~~i~~~~~s~~~~ 231 (304)
......++|+|+|++++++.. ++.|.+|++.. ++. ...+...+. .......+.|+|+++
T Consensus 161 l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~ 240 (330)
T PRK11028 161 LVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGR 240 (330)
T ss_pred ccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCC
Confidence 112357899999999988876 89999999973 332 333321111 112234688999999
Q ss_pred EEEEecC-CCcEEEEecCCCceeeeeecc---CCCCceEEeCCCCcEEEEecCc---eEEeccCC
Q 036585 232 FVISGSG-DGSVHAWSVRSGKEVASWMSF---DTEPPVIKWAPGSLMFVTGSSE---LSFWIPDL 289 (304)
Q Consensus 232 ~l~~~~~-dg~i~v~d~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~s~~~d---~~iw~~~~ 289 (304)
+++++.. ++.|.+|++........+.++ ......+.|+|+|++|+++... +.+|.++.
T Consensus 241 ~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 241 HLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 9999864 688999999653321222222 2356789999999999987753 99998753
No 168
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.88 E-value=4.8e-21 Score=154.19 Aligned_cols=230 Identities=18% Similarity=0.299 Sum_probs=178.6
Q ss_pred ceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeec
Q 036585 59 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG 138 (304)
Q Consensus 59 ~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 138 (304)
.|+.++|.|||..|+.+. +..+.+||.+.|..++++++|.+.|++++|+.||+.+++|+.|..|.+|...-....+
T Consensus 14 ci~d~afkPDGsqL~lAA----g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA----GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK 89 (1081)
T ss_pred chheeEECCCCceEEEec----CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee
Confidence 789999999999999988 7899999999999999999999999999999999999999999999999865443333
Q ss_pred eEEEeccceeEecCCCe-EEEecCCCeEEEEec-------CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEE
Q 036585 139 LLRVQGRPAAAYDDQGL-VFGYEKGPLDIFSVG-------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLST 210 (304)
Q Consensus 139 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 210 (304)
--......++.++|-.. +....-....+|... .....+.+.+|..||++++.|-.+|+|.+-+ .+++....
T Consensus 90 YSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRN-k~gEek~~ 168 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRN-KNGEEKVK 168 (1081)
T ss_pred eccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeec-CCCCcceE
Confidence 32223333455555332 222333334444332 1235788899999999999999999999987 56777777
Q ss_pred EEeCCCCCCcceEEEEcCCC-----cEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eE
Q 036585 211 YNVKPVSRNSTLEASFSPEG-----MFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LS 283 (304)
Q Consensus 211 ~~~~~~~~~~i~~~~~s~~~-----~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~ 283 (304)
+..+.+.+.+|.+++|+|.. ..+++.....++.+|.+ +|+.+..-+.-.-...|+.+-|+|.++..|+.| ++
T Consensus 169 I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~ 247 (1081)
T KOG1538|consen 169 IERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLS 247 (1081)
T ss_pred EeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhheeccCCcEEEEccCCCceE
Confidence 77766788999999999953 46888888888999887 466665545555667899999999999999988 88
Q ss_pred EeccCCccccc
Q 036585 284 FWIPDLSKLGA 294 (304)
Q Consensus 284 iw~~~~~~~~~ 294 (304)
+|.-+.-.+.+
T Consensus 248 ~fTR~GvrLGT 258 (1081)
T KOG1538|consen 248 LFTRDGVRLGT 258 (1081)
T ss_pred EEeecCeEEee
Confidence 88766554443
No 169
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.88 E-value=1.2e-20 Score=137.20 Aligned_cols=232 Identities=14% Similarity=0.196 Sum_probs=171.7
Q ss_pred CcEEEEeeC----CCeEEEEecC--Ccceeeee-cccccceeEEEEccCCC-----eEEEEecCCCCCceEEEEccCcee
Q 036585 27 GIYLVTASD----DESIRLYDVT--AATCLKTI-NSKKYGVDLVCFTSHPT-----TVIYSSKNGWDESLRLLSLHDNKY 94 (304)
Q Consensus 27 ~~~l~~~~~----d~~i~vw~~~--~~~~~~~~-~~~~~~v~~~~~~~~~~-----~l~~~~~~~~d~~i~vwd~~~~~~ 94 (304)
..+||.|+. .+.|.|-.+. +++.+..- ..|..+++.+.|.|+.. .|++. +..+++|.+...+.
T Consensus 59 ~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs-----~D~LRlWri~~ee~ 133 (364)
T KOG0290|consen 59 KFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS-----SDFLRLWRIGDEES 133 (364)
T ss_pred ceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc-----cCeEEEEeccCcCC
Confidence 457888873 3456665443 44444322 25788999999999874 44444 45999999874221
Q ss_pred ----eee-----cccccccEEEEEEcC-CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCe
Q 036585 95 ----SRY-----FKGHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPL 164 (304)
Q Consensus 95 ----~~~-----~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (304)
... -..+..+++++.|+. +.+++.+++-|-+..|||++++..- ..+.+
T Consensus 134 ~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~-~vkTQ--------------------- 191 (364)
T KOG0290|consen 134 RVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSG-TVKTQ--------------------- 191 (364)
T ss_pred ceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecccc-ceeeE---------------------
Confidence 111 124567999999997 7789999999999999999987320 01100
Q ss_pred EEEEecCCCCCceEEEEecCC-cEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcC-CCcEEEEecCC-Cc
Q 036585 165 DIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-EGMFVISGSGD-GS 241 (304)
Q Consensus 165 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d-g~ 241 (304)
+-.|...|..++|...+ +.|++.+.||.+++||++..+....+...+....+...++|++ |-+++|+-..| ..
T Consensus 192 ----LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~ 267 (364)
T KOG0290|consen 192 ----LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNK 267 (364)
T ss_pred ----EEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCce
Confidence 11477899999999865 5788899999999999998877666654444467889999998 55678876655 46
Q ss_pred EEEEecCC-CceeeeeeccCCCCceEEeCCCC-cEEEEecCc--eEEeccCC
Q 036585 242 VHAWSVRS-GKEVASWMSFDTEPPVIKWAPGS-LMFVTGSSE--LSFWIPDL 289 (304)
Q Consensus 242 i~v~d~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~d--~~iw~~~~ 289 (304)
|.|.|++. ..++.++.+|.+.|+.++|.|.. ..++++++| ..||+++.
T Consensus 268 V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 268 VVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred EEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 99999986 45688999999999999999964 689999999 88998854
No 170
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.88 E-value=2.3e-20 Score=153.60 Aligned_cols=225 Identities=16% Similarity=0.148 Sum_probs=151.4
Q ss_pred CCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee--eeecccccccEEEEEEcCC
Q 036585 36 DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY--SRYFKGHHDRVVLLSLCSS 113 (304)
Q Consensus 36 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~ 113 (304)
+..|.+||..... .+.+..|...+...+|+|+++.|++++....+..|++||+.+++. +..+.+| ...++|+||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence 3689999986544 556677777899999999999999887532245799999988753 3333333 346899999
Q ss_pred CCEEEEcc-cCCeEEEE--eCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEE
Q 036585 114 KDCFISGS-LDRTVLLW--DQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLL 190 (304)
Q Consensus 114 ~~~l~~~~-~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 190 (304)
|+.|+.+. .+|.+.|| |+.++.... + ..+...+....|+|||+.|+.
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~-l-----------------------------t~~~~~~~~~~wSpDG~~i~f 308 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTPSQ-L-----------------------------TSGAGNNTEPSWSPDGQSILF 308 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCeEe-e-----------------------------ccCCCCcCCEEECCCCCEEEE
Confidence 99888764 67765555 555443221 1 123345677999999998776
Q ss_pred ee-CCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeC
Q 036585 191 TT-MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWA 269 (304)
Q Consensus 191 ~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~ 269 (304)
.+ .+|...+|++.......... .+.. ....|+|||++|+..+.++ +.+||+.+++.......+ ....+.|+
T Consensus 309 ~s~~~g~~~I~~~~~~~~~~~~l---~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~s 380 (429)
T PRK01742 309 TSDRSGSPQVYRMSASGGGASLV---GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSIS 380 (429)
T ss_pred EECCCCCceEEEEECCCCCeEEe---cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceEC
Confidence 55 57778888765322211222 1222 3578999999998887765 666999888754322222 34678899
Q ss_pred CCCcEEEEecCc--eEEec---cCCccccccccCCCCC
Q 036585 270 PGSLMFVTGSSE--LSFWI---PDLSKLGAYVGRNRGC 302 (304)
Q Consensus 270 ~~~~~l~s~~~d--~~iw~---~~~~~~~~~~~~~~g~ 302 (304)
|||++|+.++.+ ..+|. .+.+..+.+.+++..+
T Consensus 381 PdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~ 418 (429)
T PRK01742 381 PNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQV 418 (429)
T ss_pred CCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCC
Confidence 999999998877 55443 4566666676555434
No 171
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.88 E-value=1.5e-19 Score=135.62 Aligned_cols=234 Identities=12% Similarity=0.189 Sum_probs=177.5
Q ss_pred EeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccc
Q 036585 21 LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKG 100 (304)
Q Consensus 21 i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~ 100 (304)
+.+..+...|..|+.|| .++|+.+..............|.-+-| ...+++..+... -+.+++++...+..+..+.
T Consensus 11 ~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLF--SSSLvaiV~~~q-pr~Lkv~~~Kk~~~ICe~~- 85 (391)
T KOG2110|consen 11 IGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLF--SSSLVAIVSIKQ-PRKLKVVHFKKKTTICEIF- 85 (391)
T ss_pred eeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeec--ccceeEEEecCC-CceEEEEEcccCceEEEEe-
Confidence 34777888999999998 788887755443222222334545555 456677666521 4679999998888777766
Q ss_pred ccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEE
Q 036585 101 HHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVK 180 (304)
Q Consensus 101 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 180 (304)
...+|.++.++. +.|+++-.+. |+|||+++.+.+..+.... .+...+.++.
T Consensus 86 fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~--------------------------~n~~gl~AlS 136 (391)
T KOG2110|consen 86 FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTP--------------------------PNPKGLCALS 136 (391)
T ss_pred cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccC--------------------------CCccceEeec
Confidence 567899999864 4566665544 9999999999887775331 1334566666
Q ss_pred EecCCcEEEEe--eCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCc-EEEEecCCCceeeeee
Q 036585 181 FSNDGRLMLLT--TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGS-VHAWSVRSGKEVASWM 257 (304)
Q Consensus 181 ~~~~~~~l~~~--~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~v~d~~~~~~~~~~~ 257 (304)
+++.+.+++.- ...|.|.+||+.+-+....+. .|++++-+++|+++|.+||++++.|+ |||+.+.+|+.+.+++
T Consensus 137 ~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~---aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFR 213 (391)
T KOG2110|consen 137 PNNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN---AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFR 213 (391)
T ss_pred cCCCCceEEecCCCCCceEEEEEcccceeeeEEE---ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeee
Confidence 77777788863 347899999999999999998 79999999999999999999999997 7999999999999885
Q ss_pred cc--CCCCceEEeCCCCcEEEEecCc--eEEeccCCcc
Q 036585 258 SF--DTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSK 291 (304)
Q Consensus 258 ~~--~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~ 291 (304)
.. ...|.+++|+|++++|++.+.. |.|+.++...
T Consensus 214 RG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 214 RGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred CCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 33 3468899999999999887776 8888776544
No 172
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.88 E-value=4.2e-19 Score=147.22 Aligned_cols=238 Identities=26% Similarity=0.474 Sum_probs=188.5
Q ss_pred eeEeecccCcEEEEeeCCCeEEEEecCCcc-eeeeecccc-cceeEEEE-ccCCCeEEEE-ecCCCCCceEEEEccC-ce
Q 036585 19 EILQSMEVGIYLVTASDDESIRLYDVTAAT-CLKTINSKK-YGVDLVCF-TSHPTTVIYS-SKNGWDESLRLLSLHD-NK 93 (304)
Q Consensus 19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~-~~v~~~~~-~~~~~~l~~~-~~~~~d~~i~vwd~~~-~~ 93 (304)
..+.+.+.+..++.++.|+.+.+|+...+. .+..+..+. ..+..+.+ ++++..++.. +.. |+.+.+|+... ..
T Consensus 69 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~~ 146 (466)
T COG2319 69 TSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSL--DGTVKLWDLSTPGK 146 (466)
T ss_pred EEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCC--CccEEEEEecCCCe
Confidence 345677788999999999999999998876 666676644 36777777 7888733333 322 88999999998 77
Q ss_pred eeeecccccccEEEEEEcCCCCEEEEccc-CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCC
Q 036585 94 YSRYFKGHHDRVVLLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGD 172 (304)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (304)
....+..|...|..+.|+|++..+++++. |+.+++|++........+. +|
T Consensus 147 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~ 197 (466)
T COG2319 147 LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA-----------------------------GH 197 (466)
T ss_pred EEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeec-----------------------------cC
Confidence 78888899999999999999998888885 9999999998854444333 46
Q ss_pred CCCceEEEEecCCc-EEEEeeCCCeEEEEEcCCCceeE-EEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC
Q 036585 173 ISDANVVKFSNDGR-LMLLTTMEGHIHVLDSFRGTLLS-TYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG 250 (304)
Q Consensus 173 ~~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~ 250 (304)
...+.+++|+|++. .+++++.|+.|++||...+.... .+. .|.... ...|+|++.++++++.|+.+++|+++..
T Consensus 198 ~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 273 (466)
T COG2319 198 TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS---GHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSS 273 (466)
T ss_pred CCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecC---CCCcce-eEeECCCCCEEEEecCCCcEEEeeecCC
Confidence 78899999999998 55555899999999988777766 344 455543 3389999989999999999999999876
Q ss_pred ce-eeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCcc
Q 036585 251 KE-VASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSK 291 (304)
Q Consensus 251 ~~-~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~ 291 (304)
.. +..+..|...+.++.|+|++..+++++.| +++|+.....
T Consensus 274 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 317 (466)
T COG2319 274 SSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK 317 (466)
T ss_pred CcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc
Confidence 64 44446788999999999988888888888 8999765544
No 173
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.3e-21 Score=147.54 Aligned_cols=198 Identities=17% Similarity=0.122 Sum_probs=152.7
Q ss_pred eEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceE
Q 036585 61 DLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140 (304)
Q Consensus 61 ~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 140 (304)
.+++|+++|..+++++. ||++|+|+..+...+.....|...|.++.|+|||+.|++.+.| ..+||+.+++..+...
T Consensus 148 k~vaf~~~gs~latgg~---dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGT---DGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccc---cceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 68999999999999999 9999999988888888888899999999999999999999999 8999999998555443
Q ss_pred EEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCC-----cEEEEeeCCCeEEEEEcCCCceeEE--EEe
Q 036585 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDG-----RLMLLTTMEGHIHVLDSFRGTLLST--YNV 213 (304)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~l~~~~~dg~i~~~d~~~~~~~~~--~~~ 213 (304)
... ........+.|+.|+ ..++....-+.|+.||+.....-.. ...
T Consensus 224 t~~---------------------------~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~ 276 (398)
T KOG0771|consen 224 TPF---------------------------SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRK 276 (398)
T ss_pred CCc---------------------------ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhh
Confidence 321 112334557777766 2233334455677776643322111 111
Q ss_pred CCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeee-eccCCCCceEEeCCCCcEEEEecCc--eEEeccCC
Q 036585 214 KPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASW-MSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDL 289 (304)
Q Consensus 214 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~ 289 (304)
.......|.+++.|++|++++.|+.||.|-|++..+.+.+.-. +.|...|+.+.|+||.+++++.+.+ ..+..+..
T Consensus 277 ~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 277 KIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred hhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 1123458999999999999999999999999999888876655 6799999999999999999998888 66665544
No 174
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.4e-21 Score=165.48 Aligned_cols=254 Identities=14% Similarity=0.261 Sum_probs=181.8
Q ss_pred eeEeecccCc-EEEEe----------eCCCeEEEEecCC--c----ceeeeecccccceeEEEEccCCCe----EEEEec
Q 036585 19 EILQSMEVGI-YLVTA----------SDDESIRLYDVTA--A----TCLKTINSKKYGVDLVCFTSHPTT----VIYSSK 77 (304)
Q Consensus 19 ~~i~~~~~~~-~l~~~----------~~d~~i~vw~~~~--~----~~~~~~~~~~~~v~~~~~~~~~~~----l~~~~~ 77 (304)
..+.|+|++. ++++| +.+.++.+|.+.. . +.+..+.. ....+.++|.+.+.. |+.|..
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s-~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQS-SNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccc-cccceeeeecccCCCccceeecccc
Confidence 4567777765 44444 2345566665542 2 23333332 346889999998877 455555
Q ss_pred CCCCCceEEEEccC---c---eeeeecccccccEEEEEEcCC-CCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEe
Q 036585 78 NGWDESLRLLSLHD---N---KYSRYFKGHHDRVVLLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAY 150 (304)
Q Consensus 78 ~~~d~~i~vwd~~~---~---~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 150 (304)
||.|.+||... + ..+.+...|++.|..+.|++. +++|++|+.||.|.|||+...+...... .
T Consensus 89 ---dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~--~------ 157 (1049)
T KOG0307|consen 89 ---DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG--S------ 157 (1049)
T ss_pred ---CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC--C------
Confidence 99999999865 2 245667789999999999995 4599999999999999998754433321 0
Q ss_pred cCCCeEEEecCCCeEEEEecCCCCCceEEEEecC-CcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCC
Q 036585 151 DDQGLVFGYEKGPLDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE 229 (304)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 229 (304)
....+.|.+++|+.. ...|++++.+|++.|||++..+.+..+.... ....+..++|+|+
T Consensus 158 -------------------~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~-~~~~~S~l~WhP~ 217 (1049)
T KOG0307|consen 158 -------------------QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTP-GRMHCSVLAWHPD 217 (1049)
T ss_pred -------------------CCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCC-CccceeeeeeCCC
Confidence 023467899999875 4567888899999999999988777776322 2345778999997
Q ss_pred Cc-EEEEecCCC---cEEEEecCCC-ceeeeeeccCCCCceEEeCCCC-cEEEEecCc--eEEeccCCc-cccccccCCC
Q 036585 230 GM-FVISGSGDG---SVHAWSVRSG-KEVASWMSFDTEPPVIKWAPGS-LMFVTGSSE--LSFWIPDLS-KLGAYVGRNR 300 (304)
Q Consensus 230 ~~-~l~~~~~dg---~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~d--~~iw~~~~~-~~~~~~~~~~ 300 (304)
.. .|++++.|. .|.+||++.. .+++.+.+|...|.++.|++.+ ++|++++.| +.+|+.+.. .+..+....+
T Consensus 218 ~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n 297 (1049)
T KOG0307|consen 218 HATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN 297 (1049)
T ss_pred CceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc
Confidence 63 456665443 5999999864 4678889999999999999966 899999999 666766553 3456655556
Q ss_pred CCCC
Q 036585 301 GCMD 304 (304)
Q Consensus 301 g~~d 304 (304)
.|+|
T Consensus 298 W~fd 301 (1049)
T KOG0307|consen 298 WCFD 301 (1049)
T ss_pred ceee
Confidence 6654
No 175
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.87 E-value=4.7e-20 Score=139.46 Aligned_cols=225 Identities=12% Similarity=0.146 Sum_probs=165.8
Q ss_pred eeecceee---Eeeccc-CcEEEEeeCCCeEEEEecCCc-------ceeeeecccccceeEEEEccCCC-eEEEEecCCC
Q 036585 13 SLELSEEI---LQSMEV-GIYLVTASDDESIRLYDVTAA-------TCLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGW 80 (304)
Q Consensus 13 ~~~~~~~~---i~~~~~-~~~l~~~~~d~~i~vw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~ 80 (304)
.+.+|... +.|.|. ...||+||.|.+|.||.+..+ +++..|.+|...|-.++|+|... .|++++.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~--- 152 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS--- 152 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccC---
Confidence 34455554 456665 578999999999999998754 45677889999999999999754 5666666
Q ss_pred CCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEec
Q 036585 81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYE 160 (304)
Q Consensus 81 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (304)
|.+|.+|++.+++.+.++. |.+.|+++.|+.+|.+|++.+.|..|+|||.++++.+..-..+.
T Consensus 153 Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~he---------------- 215 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHE---------------- 215 (472)
T ss_pred CceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccccc----------------
Confidence 9999999999999888888 99999999999999999999999999999999998876653221
Q ss_pred CCCeEEEEecCCCCCceEEEEecCCcEEEEee---CCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEec
Q 036585 161 KGPLDIFSVGGDISDANVVKFSNDGRLMLLTT---MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS 237 (304)
Q Consensus 161 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 237 (304)
...-..+.|-.+|..+-+|. .+..+-+||..+-+.-..+... ...+.|.---|.||.+.++.++
T Consensus 216 ------------G~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~el-DtSnGvl~PFyD~dt~ivYl~G 282 (472)
T KOG0303|consen 216 ------------GAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQEL-DTSNGVLLPFYDPDTSIVYLCG 282 (472)
T ss_pred ------------CCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEe-ccCCceEEeeecCCCCEEEEEe
Confidence 12334466777888555543 3678999997654433333222 2456676677899988877554
Q ss_pred -CCCcEEEEecCCCce----eeeeeccCCCCceEEeCCC
Q 036585 238 -GDGSVHAWSVRSGKE----VASWMSFDTEPPVIKWAPG 271 (304)
Q Consensus 238 -~dg~i~v~d~~~~~~----~~~~~~~~~~i~~~~~~~~ 271 (304)
.|+.||-|.+.+..+ +.++. ...+-..+.|-|-
T Consensus 283 KGD~~IRYyEit~d~P~~hyln~f~-S~epQRG~g~mPK 320 (472)
T KOG0303|consen 283 KGDSSIRYFEITNEPPFVHYLNTFS-SKEPQRGMGFMPK 320 (472)
T ss_pred cCCcceEEEEecCCCceeEEecccc-cCCcccccccccc
Confidence 799999999977654 22222 2334456666664
No 176
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=1e-19 Score=153.27 Aligned_cols=269 Identities=13% Similarity=0.186 Sum_probs=194.8
Q ss_pred eeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccc---cceeEEEEcc--CCCeEEEEecCCCCCceEEEEccC-
Q 036585 18 EEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKK---YGVDLVCFTS--HPTTVIYSSKNGWDESLRLLSLHD- 91 (304)
Q Consensus 18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~---~~v~~~~~~~--~~~~l~~~~~~~~d~~i~vwd~~~- 91 (304)
+..+.++|....++++...-.|+|||.+.++.+..+..+. ..|+.+.+-. |...+++++. ||.|+||+--.
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~---dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASS---DGVIRIWKDYAD 1143 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeecc---CceEEEeccccc
Confidence 5678899999999999877789999999999888777543 5688888865 4567888988 99999996432
Q ss_pred ----ceeeeecccc-------cccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccce-eEec-----CCC
Q 036585 92 ----NKYSRYFKGH-------HDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA-AAYD-----DQG 154 (304)
Q Consensus 92 ----~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~-----~~~ 154 (304)
.+.+..+.+- .+.=.-++|.+...+|++++.-..|+|||.........+....... .+.+ .+-
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~ 1223 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNI 1223 (1387)
T ss_pred ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCce
Confidence 2233222211 1111446788766677777778999999999887776665543332 1222 234
Q ss_pred eEEEecCCCeEEEEecC------------CCCC--ceEEEEecCCc-EEEEeeCCCeEEEEEcCCCceeEEEEeC--CCC
Q 036585 155 LVFGYEKGPLDIFSVGG------------DISD--ANVVKFSNDGR-LMLLTTMEGHIHVLDSFRGTLLSTYNVK--PVS 217 (304)
Q Consensus 155 ~~~~~~~~~~~~~~~~~------------~~~~--v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~--~~~ 217 (304)
.+.++.+|.+++|+..- |... |..+.+.+.|- .|++|+.+|.|++||++.......+... ...
T Consensus 1224 i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~y 1303 (1387)
T KOG1517|consen 1224 IAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEY 1303 (1387)
T ss_pred EEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecccc
Confidence 66799999999998652 4444 88888888664 4999999999999999985332222211 112
Q ss_pred CCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeec-------cCCCCceEEeCCCCcEEEEecCc--eEEeccC
Q 036585 218 RNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMS-------FDTEPPVIKWAPGSLMFVTGSSE--LSFWIPD 288 (304)
Q Consensus 218 ~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~ 288 (304)
.+..+++..++....+|+|+. +.|+||++. |+.+..++. ..+.+.|++|+|...++|+|+.| +.||..+
T Consensus 1304 Gs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1304 GSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred CccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecC
Confidence 335999999999999999998 899999985 444333322 23567999999999999999988 8999776
Q ss_pred Ccc
Q 036585 289 LSK 291 (304)
Q Consensus 289 ~~~ 291 (304)
...
T Consensus 1382 k~~ 1384 (1387)
T KOG1517|consen 1382 KPR 1384 (1387)
T ss_pred CcC
Confidence 544
No 177
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.86 E-value=1.8e-20 Score=136.24 Aligned_cols=231 Identities=12% Similarity=0.160 Sum_probs=167.4
Q ss_pred EEEEee----CCCeEEEEecCCcc--e-eeeecccccceeEEEEccCCCeEEEEecC-CCC----CceEEEEccCc----
Q 036585 29 YLVTAS----DDESIRLYDVTAAT--C-LKTINSKKYGVDLVCFTSHPTTVIYSSKN-GWD----ESLRLLSLHDN---- 92 (304)
Q Consensus 29 ~l~~~~----~d~~i~vw~~~~~~--~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~d----~~i~vwd~~~~---- 92 (304)
.+++|. .|+.|.+.+++... + ...+..|.+.|..++-+|-...+++...+ ..| ..+.||.+...
T Consensus 28 cFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S 107 (370)
T KOG1007|consen 28 CFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS 107 (370)
T ss_pred EEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc
Confidence 445554 46778877766432 2 24456677899999999977666555432 001 35789988643
Q ss_pred -----eeeeecc-cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceee-ceEEEeccceeEecCCCeEEEecCCCeE
Q 036585 93 -----KYSRYFK-GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ-GLLRVQGRPAAAYDDQGLVFGYEKGPLD 165 (304)
Q Consensus 93 -----~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (304)
+++..+. .+-+.|.|+.|.|++..+++-. |..|.+|++.....+ ..+......
T Consensus 108 ~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~------------------- 167 (370)
T KOG1007|consen 108 NSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESA------------------- 167 (370)
T ss_pred ccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccc-------------------
Confidence 2233343 4556899999999999888876 789999999877652 222211110
Q ss_pred EEEecCCCCCceEEEEec--CCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCc-EEEEecCCCcE
Q 036585 166 IFSVGGDISDANVVKFSN--DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVISGSGDGSV 242 (304)
Q Consensus 166 ~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i 242 (304)
.+....++-+|+| +|..+++ ..|+++..||+++.+....+.. .|...+..+.|+|+.+ +|++++.||.|
T Consensus 168 -----e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~sI~d--AHgq~vrdlDfNpnkq~~lvt~gDdgyv 239 (370)
T KOG1007|consen 168 -----EMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNSIED--AHGQRVRDLDFNPNKQHILVTCGDDGYV 239 (370)
T ss_pred -----cccceecccccCCCCccceEEE-eCCCcEEEEEccchhhhcchhh--hhcceeeeccCCCCceEEEEEcCCCccE
Confidence 2345567788998 6665555 4678999999998887776654 6888899999999876 47889999999
Q ss_pred EEEecCCC-ceeeeeeccCCCCceEEeCCC-CcEEEEecCc--eEEecc
Q 036585 243 HAWSVRSG-KEVASWMSFDTEPPVIKWAPG-SLMFVTGSSE--LSFWIP 287 (304)
Q Consensus 243 ~v~d~~~~-~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~d--~~iw~~ 287 (304)
+|||.+.. .++.++.+|...|+++.|+|. .+++.+++.| +.+|..
T Consensus 240 riWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca 288 (370)
T KOG1007|consen 240 RIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCA 288 (370)
T ss_pred EEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEec
Confidence 99999864 568899999999999999995 4677888888 777754
No 178
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.9e-19 Score=136.41 Aligned_cols=265 Identities=13% Similarity=0.175 Sum_probs=194.0
Q ss_pred eeeEeecccCcEEEEeeCCCeEEEEecCC------cceeeeecc-cccceeEEEEccCCCeEEEEecCCCCCceEEEEcc
Q 036585 18 EEILQSMEVGIYLVTASDDESIRLYDVTA------ATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH 90 (304)
Q Consensus 18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~------~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~ 90 (304)
..++.|+.++++|++|+.|..+++|+++. .+++..... |...|.|++|......+++|.. +++|.+-|++
T Consensus 59 iNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~---~~~VI~HDiE 135 (609)
T KOG4227|consen 59 INALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGER---WGTVIKHDIE 135 (609)
T ss_pred cceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCC---cceeEeeecc
Confidence 34577888899999999999999999863 344444333 5578999999999999999998 9999999999
Q ss_pred Cceeeeeccc--ccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcce-eeceEEEecc----ceeEecCCC---eEEEec
Q 036585 91 DNKYSRYFKG--HHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEK-CQGLLRVQGR----PAAAYDDQG---LVFGYE 160 (304)
Q Consensus 91 ~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~----~~~~~~~~~---~~~~~~ 160 (304)
+.+.+..+.. ..+.|+.+..+|..+.|++.+.++.|.+||.+..+ ....+..... ..+.+.|.. .++...
T Consensus 136 t~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~ 215 (609)
T KOG4227|consen 136 TKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSE 215 (609)
T ss_pred cceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccc
Confidence 9988777652 23489999999999999999999999999998776 3333322211 123444433 455666
Q ss_pred CCCeEEEEecCCCC----------------CceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCC-----CCC
Q 036585 161 KGPLDIFSVGGDIS----------------DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV-----SRN 219 (304)
Q Consensus 161 ~~~~~~~~~~~~~~----------------~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-----~~~ 219 (304)
.+...+|+...... .-..+.|+|+|..|++--....-.+||+.+.++. .++.... ...
T Consensus 216 ~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~-V~k~D~N~~GY~N~~ 294 (609)
T KOG4227|consen 216 TGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCF-VLKSDHNPNGYCNIK 294 (609)
T ss_pred cCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccce-eEeccCCCCcceeee
Confidence 77888888764322 2246789999998887766666677887664432 2221111 122
Q ss_pred cceEEEEcCCCcEEEEecCCCcEEEEecCC-----C------------------ceeeeeeccCCCCceEEeCCCCcEEE
Q 036585 220 STLEASFSPEGMFVISGSGDGSVHAWSVRS-----G------------------KEVASWMSFDTEPPVIKWAPGSLMFV 276 (304)
Q Consensus 220 ~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~-----~------------------~~~~~~~~~~~~i~~~~~~~~~~~l~ 276 (304)
.+.+++|..|- .+++|+.+-.|++|.+.. | +.+..+++|..-++.+.|+|...+|+
T Consensus 295 T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~ 373 (609)
T KOG4227|consen 295 TIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLV 373 (609)
T ss_pred eeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEe
Confidence 46677887554 499999999999998742 1 12345689999999999999999988
Q ss_pred EecCc--eEEecc
Q 036585 277 TGSSE--LSFWIP 287 (304)
Q Consensus 277 s~~~d--~~iw~~ 287 (304)
+.+-. ++||..
T Consensus 374 SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 374 SSGVENSFKLWSD 386 (609)
T ss_pred ccchhhheecccc
Confidence 88876 999964
No 179
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.86 E-value=2.6e-20 Score=140.87 Aligned_cols=205 Identities=16% Similarity=0.223 Sum_probs=158.6
Q ss_pred eeecccccceeEEEEccCCC-eEEEEecCCCCCceEEEEccCc-------eeeeecccccccEEEEEEcCC-CCEEEEcc
Q 036585 51 KTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDESLRLLSLHDN-------KYSRYFKGHHDRVVLLSLCSS-KDCFISGS 121 (304)
Q Consensus 51 ~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~d~~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~ 121 (304)
-.+.+|+++|..++|+|... .+++|+. |.+|.||.+..+ +++..+.+|+..|--++|+|. .+.|++++
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSe---D~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag 151 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSE---DTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG 151 (472)
T ss_pred CCccCccccccccccCccCCceeecCCC---CceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc
Confidence 34668999999999999655 5666666 999999999754 456778899999999999995 45899999
Q ss_pred cCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEE
Q 036585 122 LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD 201 (304)
Q Consensus 122 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d 201 (304)
.|.+|.+||+.+++....+. |...|.++.|+.||.+|++.+.|..|++||
T Consensus 152 ~Dn~v~iWnv~tgeali~l~------------------------------hpd~i~S~sfn~dGs~l~TtckDKkvRv~d 201 (472)
T KOG0303|consen 152 SDNTVSIWNVGTGEALITLD------------------------------HPDMVYSMSFNRDGSLLCTTCKDKKVRVID 201 (472)
T ss_pred CCceEEEEeccCCceeeecC------------------------------CCCeEEEEEeccCCceeeeecccceeEEEc
Confidence 99999999999998765543 678899999999999999999999999999
Q ss_pred cCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEec---CCCcEEEEecCCCce---eeeeeccCCCCceEEeCCCCcEE
Q 036585 202 SFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS---GDGSVHAWSVRSGKE---VASWMSFDTEPPVIKWAPGSLMF 275 (304)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~v~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l 275 (304)
.++++.+..-..+.+ ..-..+.|-.++..+-+|- .+..+-+||..+.+. ..++. ....|.---|.||.+++
T Consensus 202 pr~~~~v~e~~~heG--~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~iv 278 (472)
T KOG0303|consen 202 PRRGTVVSEGVAHEG--AKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIV 278 (472)
T ss_pred CCCCcEeeecccccC--CCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEE
Confidence 999999888753222 2334566777888555552 577899999877554 23333 23334444578888888
Q ss_pred EEecCc---eEEeccCCcc
Q 036585 276 VTGSSE---LSFWIPDLSK 291 (304)
Q Consensus 276 ~s~~~d---~~iw~~~~~~ 291 (304)
+.++.. ||-|.+..+.
T Consensus 279 Yl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 279 YLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred EEEecCCcceEEEEecCCC
Confidence 776655 8888876655
No 180
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.86 E-value=2e-18 Score=143.23 Aligned_cols=234 Identities=26% Similarity=0.461 Sum_probs=183.8
Q ss_pred cccCc-EEEEeeC-CCeEEEEecCC-cceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccc
Q 036585 24 MEVGI-YLVTASD-DESIRLYDVTA-ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKG 100 (304)
Q Consensus 24 ~~~~~-~l~~~~~-d~~i~vw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~ 100 (304)
.+++. +++..+. |+.+++|+... ......+..|...|..++|+|++..++.++. .|+.+++|++..+..+..+.+
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 196 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS--LDGTIKLWDLRTGKPLSTLAG 196 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC--CCCceEEEEcCCCceEEeecc
Confidence 66666 5555444 99999999988 7888889999999999999999998887763 299999999999888888988
Q ss_pred ccccEEEEEEcCCCC-EEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEE
Q 036585 101 HHDRVVLLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVV 179 (304)
Q Consensus 101 ~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 179 (304)
|...|.+++|+|++. .+++++.|+.+++||...+..... .+..|.... ..
T Consensus 197 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~----------------------------~~~~~~~~~-~~ 247 (466)
T COG2319 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS----------------------------TLSGHSDSV-VS 247 (466)
T ss_pred CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEee----------------------------ecCCCCcce-eE
Confidence 999999999999998 555559999999998774444331 112343443 23
Q ss_pred EEecCCcEEEEeeCCCeEEEEEcCCCce-eEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeee-
Q 036585 180 KFSNDGRLMLLTTMEGHIHVLDSFRGTL-LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWM- 257 (304)
Q Consensus 180 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~- 257 (304)
.|+|++..+++++.++.+++|+++.... ...+ ..|...+.++.|+|++..+++++.|+.+.+||..+........
T Consensus 248 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 324 (466)
T COG2319 248 SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL---SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTL 324 (466)
T ss_pred eECCCCCEEEEecCCCcEEEeeecCCCcEEEEE---ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeee
Confidence 8999998889999999999999987665 4444 2578899999999988888888888889999998887766665
Q ss_pred -ccCCCCceEEeCCCCcEEEEe-cCc--eEEeccCCcc
Q 036585 258 -SFDTEPPVIKWAPGSLMFVTG-SSE--LSFWIPDLSK 291 (304)
Q Consensus 258 -~~~~~i~~~~~~~~~~~l~s~-~~d--~~iw~~~~~~ 291 (304)
.|...+..+.|.+++..++.+ ..| +.+|+.....
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 325 KGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred cccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 788889999994342455555 455 7778776554
No 181
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.86 E-value=1.5e-21 Score=150.29 Aligned_cols=232 Identities=14% Similarity=0.155 Sum_probs=194.0
Q ss_pred ecceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee
Q 036585 15 ELSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY 94 (304)
Q Consensus 15 ~~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~ 94 (304)
++.+--+....+|++|+.|+..|.|-.+|..++++...+.... .|..+.|-.+..+++++- ...++|||-. |..
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E-tv~Dv~~LHneq~~AVAQ----K~y~yvYD~~-GtE 202 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVME-TVRDVTFLHNEQFFAVAQ----KKYVYVYDNN-GTE 202 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhh-hhhhhhhhcchHHHHhhh----hceEEEecCC-CcE
Confidence 3444556778889999999999999999999999988887544 799999998888888886 7899999954 566
Q ss_pred eeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCC
Q 036585 95 SRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDIS 174 (304)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (304)
++.++.| ..|..+.|.|.--+|++++..|.++.-|+.+++.+..+... .+
T Consensus 203 lHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~-----------------------------~G 252 (545)
T KOG1272|consen 203 LHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTG-----------------------------AG 252 (545)
T ss_pred Eeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHcc-----------------------------CC
Confidence 6777755 56899999999889999999999999999999988777532 34
Q ss_pred CceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceee
Q 036585 175 DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVA 254 (304)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~ 254 (304)
.+..++-+|-+..+-+|..+|+|.+|.....+++..+. .|.++|.++++.++|+|++|++.|..++|||+++...+.
T Consensus 253 ~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiL---cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~ 329 (545)
T KOG1272|consen 253 RTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL---CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLH 329 (545)
T ss_pred ccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHH---hcCCCcceEEECCCCcEEeecccccceeEeeeccccccc
Confidence 66778888988899999999999999999988888777 699999999999999999999999999999999988776
Q ss_pred eeeccCCCCceEEeCCCCcEEEEecCceEEec
Q 036585 255 SWMSFDTEPPVIKWAPGSLMFVTGSSELSFWI 286 (304)
Q Consensus 255 ~~~~~~~~i~~~~~~~~~~~l~s~~~d~~iw~ 286 (304)
++.. ..+...+++|..|.+.++-+..+.||.
T Consensus 330 t~~t-p~~a~~ls~SqkglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 330 TYRT-PHPASNLSLSQKGLLALSYGDHVQIWK 360 (545)
T ss_pred eeec-CCCccccccccccceeeecCCeeeeeh
Confidence 6654 456788888877654444444499995
No 182
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.86 E-value=3.4e-19 Score=143.77 Aligned_cols=257 Identities=16% Similarity=0.220 Sum_probs=177.0
Q ss_pred cCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCC---eEEEEecCCCCCceEEEEccCc--eeeeeccc
Q 036585 26 VGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT---TVIYSSKNGWDESLRLLSLHDN--KYSRYFKG 100 (304)
Q Consensus 26 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~~~~d~~i~vwd~~~~--~~~~~~~~ 100 (304)
.+..++.|. ...|.+||..+......+.+|..+|+|+.|-|..+ .+++|+. |+.|.+|.++.. ..+..+++
T Consensus 24 ~~~~vafGa-~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~s---D~~v~lW~l~~~~~~~i~~~~g 99 (764)
T KOG1063|consen 24 PGGLVAFGA-GPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDS---DGRVILWKLRDEYLIKIYTIQG 99 (764)
T ss_pred ccceEEecC-CceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccC---CCcEEEEEEeehheEEEEeecC
Confidence 344555554 46899999988878899999999999999999887 7999998 999999999843 34556666
Q ss_pred ccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcce--eeceEEEec---------------cceeEecCCCeEE---Ee-
Q 036585 101 HHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEK--CQGLLRVQG---------------RPAAAYDDQGLVF---GY- 159 (304)
Q Consensus 101 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~---------------~~~~~~~~~~~~~---~~- 159 (304)
|...+.|+ +.......+...|+.+.+||.+..+ +...+.... ....+.......+ +.
T Consensus 100 ~~~~~~cv--~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~ 177 (764)
T KOG1063|consen 100 HCKECVCV--VARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSS 177 (764)
T ss_pred cceeEEEE--EeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccC
Confidence 66655554 4333333334789999999985544 222222211 1112222221111 11
Q ss_pred cCCCeEEEEecCCCCCceEEEEecCC---cEEEEeeCCCeEEEEEcCCCc---------------------eeEEEE---
Q 036585 160 EKGPLDIFSVGGDISDANVVKFSNDG---RLMLLTTMEGHIHVLDSFRGT---------------------LLSTYN--- 212 (304)
Q Consensus 160 ~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~~~d~~~~~---------------------~~~~~~--- 212 (304)
.+.-..+..+.+|..-|.+++|...+ -+|+++++|..|++|.+.-+. ....+.
T Consensus 178 ~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~i 257 (764)
T KOG1063|consen 178 ADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRI 257 (764)
T ss_pred CcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEE
Confidence 12224556788999999999997754 478899999999999864222 111111
Q ss_pred ----eCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCc-------------------------------------
Q 036585 213 ----VKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGK------------------------------------- 251 (304)
Q Consensus 213 ----~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~------------------------------------- 251 (304)
...+|...|.++.|+|.+..|++++.|.++.+|...+..
T Consensus 258 s~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~ 337 (764)
T KOG1063|consen 258 SFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRT 337 (764)
T ss_pred ehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEeccc
Confidence 123789999999999999999999999999999654321
Q ss_pred ---------------eeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccC
Q 036585 252 ---------------EVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPD 288 (304)
Q Consensus 252 ---------------~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~ 288 (304)
....+.+|...|..++|+|.|.+|.+.+.| -|++-.-
T Consensus 338 Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w 391 (764)
T KOG1063|consen 338 GGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW 391 (764)
T ss_pred CcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccc
Confidence 011124777888999999999999999988 6666443
No 183
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.86 E-value=1.4e-18 Score=142.71 Aligned_cols=227 Identities=11% Similarity=0.095 Sum_probs=152.9
Q ss_pred eEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEE
Q 036585 38 SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCF 117 (304)
Q Consensus 38 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 117 (304)
.|.++|...... +.+..+...+...+|+|||+.|+..+....+..|.+|++.+++.... ....+.+..+.|+|||+.|
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~L 257 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKL 257 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEE
Confidence 688999875443 33444566899999999999999876432256899999988754332 2233344568999999988
Q ss_pred EEc-ccCC--eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCC
Q 036585 118 ISG-SLDR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTME 194 (304)
Q Consensus 118 ~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 194 (304)
+.. +.+| .|++||+++++..... .+...+....|+|||+.|+..+.+
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~~~lt------------------------------~~~~~~~~~~wSPDG~~I~f~s~~ 307 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQIRQVT------------------------------DGRSNNTEPTWFPDSQNLAYTSDQ 307 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEcc------------------------------CCCCCcCceEECCCCCEEEEEeCC
Confidence 754 4344 5888998876543221 122345678999999988877654
Q ss_pred -C--eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC---CcEEEEecCCCceeeeeeccCCCCceEEe
Q 036585 195 -G--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD---GSVHAWSVRSGKEVASWMSFDTEPPVIKW 268 (304)
Q Consensus 195 -g--~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~i~~~~~ 268 (304)
+ .|+++|+.+++.. .+. ..........|+|||++|+..+.+ ..|.+||+.+++.. .+.. ........|
T Consensus 308 ~g~~~Iy~~d~~~g~~~-~lt---~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~ 381 (429)
T PRK03629 308 AGRPQVYKVNINGGAPQ-RIT---WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSI 381 (429)
T ss_pred CCCceEEEEECCCCCeE-Eee---cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceE
Confidence 3 4566677666543 333 233345578999999998876543 35889999887643 3332 223456789
Q ss_pred CCCCcEEEEecCc-----eEEeccCCccccccccCCCCC
Q 036585 269 APGSLMFVTGSSE-----LSFWIPDLSKLGAYVGRNRGC 302 (304)
Q Consensus 269 ~~~~~~l~s~~~d-----~~iw~~~~~~~~~~~~~~~g~ 302 (304)
+|||++|+.++.+ +.+++.+.+....+.++...+
T Consensus 382 SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~ 420 (429)
T PRK03629 382 APNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQV 420 (429)
T ss_pred CCCCCEEEEEEcCCCceEEEEEECCCCCeEECccCCCCc
Confidence 9999999988876 456677777777776654433
No 184
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=5.5e-20 Score=146.06 Aligned_cols=243 Identities=11% Similarity=0.108 Sum_probs=176.2
Q ss_pred eeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCC--EEEEcccCCeEE
Q 036585 50 LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKD--CFISGSLDRTVL 127 (304)
Q Consensus 50 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~ 127 (304)
-..+.+|++.|.++...|.|..|++|+. ||+|+||.+.++.+++.+. ..+.|.|++|+|.+. .|+++- +..+.
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsd---DGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~-~~~~~ 467 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSD---DGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAV-GECVL 467 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCC---CCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEe-cCceE
Confidence 3457899999999999999999999999 9999999999999999887 567899999999765 344443 44477
Q ss_pred EEeCCcceeeceEEEeccce---eEecCCCeEEEecC-----CCeEEEEecCCCCCceEEEEecCCcEEEEeeCC---Ce
Q 036585 128 LWDQRAEKCQGLLRVQGRPA---AAYDDQGLVFGYEK-----GPLDIFSVGGDISDANVVKFSNDGRLMLLTTME---GH 196 (304)
Q Consensus 128 iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~ 196 (304)
|.+..-+..+.......... ..-.++..++.+.. ....+...-.|...|+.+.|+..|.||++..-+ ..
T Consensus 468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~ 547 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKS 547 (733)
T ss_pred EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcce
Confidence 76655442222111100000 00111112221111 111122223477899999999999999987654 46
Q ss_pred EEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEE
Q 036585 197 IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFV 276 (304)
Q Consensus 197 i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 276 (304)
|.|.++........|. ...+.+.++.|+|...+|++++ ...|+|||+...+.++.+......|..++.+|.|..|+
T Consensus 548 VliHQLSK~~sQ~PF~---kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli 623 (733)
T KOG0650|consen 548 VLIHQLSKRKSQSPFR---KSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLI 623 (733)
T ss_pred EEEEecccccccCchh---hcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEE
Confidence 8999998777666665 4678899999999999999886 45799999998888888887888999999999999999
Q ss_pred EecCc--eEEeccCCc--cccccccCCCC
Q 036585 277 TGSSE--LSFWIPDLS--KLGAYVGRNRG 301 (304)
Q Consensus 277 s~~~d--~~iw~~~~~--~~~~~~~~~~g 301 (304)
.++.| +..+|+++. ..++++-|++.
T Consensus 624 ~gs~d~k~~WfDldlsskPyk~lr~H~~a 652 (733)
T KOG0650|consen 624 LGSYDKKMCWFDLDLSSKPYKTLRLHEKA 652 (733)
T ss_pred EecCCCeeEEEEcccCcchhHHhhhhhhh
Confidence 99999 667788765 44566555543
No 185
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.85 E-value=2.1e-19 Score=132.47 Aligned_cols=231 Identities=13% Similarity=0.134 Sum_probs=179.7
Q ss_pred ceeeEeecccCcEEEEeeCCCeEEEEecCCc---ceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEcc-Cc
Q 036585 17 SEEILQSMEVGIYLVTASDDESIRLYDVTAA---TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH-DN 92 (304)
Q Consensus 17 ~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~-~~ 92 (304)
.....++.+|+..+|++.....|.||..... +..++++.|...|+.++|+|..+.|++++. |..-+||... .+
T Consensus 12 pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~---drnayVw~~~~~~ 88 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSH---DRNAYVWTQPSGG 88 (361)
T ss_pred ceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccC---CCCccccccCCCC
Confidence 4445677889999999999999999987654 467889999999999999999999999999 9999999984 33
Q ss_pred --eeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEec
Q 036585 93 --KYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVG 170 (304)
Q Consensus 93 --~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (304)
++...+..+...++++.|+|.++.|++|+....|.+|-++....-..-+.-..
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikk------------------------- 143 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKK------------------------- 143 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCC-------------------------
Confidence 34555667899999999999999999999999999998776544322221111
Q ss_pred CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcC-----C-------------CceeEEEEeCCCCCCcceEEEEcCCCcE
Q 036585 171 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF-----R-------------GTLLSTYNVKPVSRNSTLEASFSPEGMF 232 (304)
Q Consensus 171 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~-----~-------------~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 232 (304)
...+.|.++.|+|++-++++|+.|+..++|..- . |+++.++. ...+.+..+.|+|+|+.
T Consensus 144 PirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~---~~ggwvh~v~fs~sG~~ 220 (361)
T KOG1523|consen 144 PIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS---SSGGWVHGVLFSPSGNR 220 (361)
T ss_pred ccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc---cCCCceeeeEeCCCCCE
Confidence 245788999999999999999999999998741 1 22222332 35678999999999999
Q ss_pred EEEecCCCcEEEEecCCCc-eeeeeeccCCCCceEEeCCCCcEEEEe
Q 036585 233 VISGSGDGSVHAWSVRSGK-EVASWMSFDTEPPVIKWAPGSLMFVTG 278 (304)
Q Consensus 233 l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~s~ 278 (304)
|+-.+.|..+.+-|..... .+.......-+..++.|-.+...++.|
T Consensus 221 lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag 267 (361)
T KOG1523|consen 221 LAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAG 267 (361)
T ss_pred eeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCceeecC
Confidence 9999999999999986654 344444344777888887665444433
No 186
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=5.2e-20 Score=136.70 Aligned_cols=191 Identities=19% Similarity=0.245 Sum_probs=148.1
Q ss_pred CeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcC--CCCEEEEcccCCeEEEEeCCcceeeceEEEeccce
Q 036585 70 TTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA 147 (304)
Q Consensus 70 ~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 147 (304)
..++++.+ .|.|++||..+++.+..++++...+..+.|.. ....+.+++.||+|++||+|.......+.....+
T Consensus 41 ~~vav~lS---ngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~- 116 (376)
T KOG1188|consen 41 TAVAVSLS---NGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS- 116 (376)
T ss_pred eeEEEEec---CCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC-
Confidence 56777777 99999999999999999999999999999986 5668999999999999999988777666543221
Q ss_pred eEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC----CCeEEEEEcCCCce-eEEEEeCCCCCCcce
Q 036585 148 AAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM----EGHIHVLDSFRGTL-LSTYNVKPVSRNSTL 222 (304)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~-~~~~~~~~~~~~~i~ 222 (304)
..+..+++.+..++.+++|+. +-.+.+||++..+. +..+.. .|...|+
T Consensus 117 -------------------------~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e--SH~DDVT 169 (376)
T KOG1188|consen 117 -------------------------GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE--SHNDDVT 169 (376)
T ss_pred -------------------------CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh--hccCcce
Confidence 134566777667788888753 56799999998776 444432 6899999
Q ss_pred EEEEcC-CCcEEEEecCCCcEEEEecCCCce---eeeeeccCCCCceEEeCCCC--cEEEEecCc-eEEeccCCcc
Q 036585 223 EASFSP-EGMFVISGSGDGSVHAWSVRSGKE---VASWMSFDTEPPVIKWAPGS--LMFVTGSSE-LSFWIPDLSK 291 (304)
Q Consensus 223 ~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~~~~i~~~~~~~~~--~~l~s~~~d-~~iw~~~~~~ 291 (304)
+++|+| +.++|++|+.||.|.+||++.... +...-.|...|.++.|..++ +.+...... ..+|+++-..
T Consensus 170 ~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 170 QLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred eEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 999999 568999999999999999975432 33334578889999999887 533333333 9999886443
No 187
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.6e-18 Score=142.22 Aligned_cols=272 Identities=13% Similarity=0.155 Sum_probs=193.9
Q ss_pred eeeEeecccCcEEEEeeCCCeEEEEecCC----cceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCce
Q 036585 18 EEILQSMEVGIYLVTASDDESIRLYDVTA----ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK 93 (304)
Q Consensus 18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~ 93 (304)
...++++|.++++|+|..||.|.+|.--. ....+.+.=|..+|.+++|+++|.+|++|+. .+.+.+|.+.+++
T Consensus 208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~---E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGR---EGVLVLWQLETGK 284 (792)
T ss_pred ceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeeccc---ceEEEEEeecCCC
Confidence 35688999999999999999999997432 1234556678889999999999999999998 9999999999988
Q ss_pred eeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEE---e----------ccceeEecC--CCeEEE
Q 036585 94 YSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV---Q----------GRPAAAYDD--QGLVFG 158 (304)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~----------~~~~~~~~~--~~~~~~ 158 (304)
.+-+..-.++|..+.++||+.+.+....|..|.+....+......+.. . -...++++| +..++.
T Consensus 285 -kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln 363 (792)
T KOG1963|consen 285 -KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLN 363 (792)
T ss_pred -cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeec
Confidence 555666788999999999999999999999999887654433322211 1 011344555 234555
Q ss_pred ecCCCeEEEEecC--------------------CCCCceEEEEecCCcEEEEee--------CCC--eEEEEEcCCCcee
Q 036585 159 YEKGPLDIFSVGG--------------------DISDANVVKFSNDGRLMLLTT--------MEG--HIHVLDSFRGTLL 208 (304)
Q Consensus 159 ~~~~~~~~~~~~~--------------------~~~~v~~~~~~~~~~~l~~~~--------~dg--~i~~~d~~~~~~~ 208 (304)
...+.++.|++.. +...++.++.+..|.++++.- .|| .+++|-.......
T Consensus 364 ~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt 443 (792)
T KOG1963|consen 364 GHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKT 443 (792)
T ss_pred CCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcce
Confidence 5666677766542 123456677777888888863 233 5778876543332
Q ss_pred EEEE--eCCCCCCcceEEEEcC-C-CcEEEEecCCCcEEEEecCCCc----------eeeeeeccCCCCceEEeCCCCcE
Q 036585 209 STYN--VKPVSRNSTLEASFSP-E-GMFVISGSGDGSVHAWSVRSGK----------EVASWMSFDTEPPVIKWAPGSLM 274 (304)
Q Consensus 209 ~~~~--~~~~~~~~i~~~~~s~-~-~~~l~~~~~dg~i~v~d~~~~~----------~~~~~~~~~~~i~~~~~~~~~~~ 274 (304)
..+. ....|+..+...++.+ . ...+++++.||.++||-+.+.+ +...-..|..+++.++|+.||..
T Consensus 444 ~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGsl 523 (792)
T KOG1963|consen 444 FILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSL 523 (792)
T ss_pred eEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcE
Confidence 2222 2224666666666555 2 2378999999999999884322 11111247889999999999999
Q ss_pred EEEecCc-eEEeccCC-cccc
Q 036585 275 FVTGSSE-LSFWIPDL-SKLG 293 (304)
Q Consensus 275 l~s~~~d-~~iw~~~~-~~~~ 293 (304)
|+.+-++ +.+|+++. +.+.
T Consensus 524 la~s~~~~Itiwd~~~~~~l~ 544 (792)
T KOG1963|consen 524 LAVSFDDTITIWDYDTKNELL 544 (792)
T ss_pred EEEecCCEEEEecCCChhhhh
Confidence 9999999 99999987 4443
No 188
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.85 E-value=2.6e-19 Score=147.40 Aligned_cols=210 Identities=14% Similarity=0.154 Sum_probs=149.0
Q ss_pred eeEeecccCcEEEEeeCC---CeEEEEecCCcce--eeeecccccceeEEEEccCCCeEEEEecCCCCCceEE--EEccC
Q 036585 19 EILQSMEVGIYLVTASDD---ESIRLYDVTAATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL--LSLHD 91 (304)
Q Consensus 19 ~~i~~~~~~~~l~~~~~d---~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~v--wd~~~ 91 (304)
....++|+|++|+..+.+ ..|++||+.+++. +..+.++ ...++|+||++.|+++... ++.+.| ||+.+
T Consensus 207 ~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~--~g~~~Iy~~d~~~ 281 (429)
T PRK01742 207 MSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSK--DGVLNIYVMGANG 281 (429)
T ss_pred ccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEec--CCcEEEEEEECCC
Confidence 347899999999988754 3699999988754 3334333 3468999999999887632 665555 56666
Q ss_pred ceeeeecccccccEEEEEEcCCCCEEEEcc-cCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEec
Q 036585 92 NKYSRYFKGHHDRVVLLSLCSSKDCFISGS-LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVG 170 (304)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (304)
++. ..+..+...+....|+|||+.++..+ .++...+|++..........
T Consensus 282 ~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l----------------------------- 331 (429)
T PRK01742 282 GTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV----------------------------- 331 (429)
T ss_pred CCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-----------------------------
Confidence 553 44555667788999999999776554 57788888765322111110
Q ss_pred CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEec--C
Q 036585 171 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSV--R 248 (304)
Q Consensus 171 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~--~ 248 (304)
.+.. ....|+|+|++++..+.++ +.+||+.+++...... . .....+.|+|||++|+.++.++.+.+|++ .
T Consensus 332 ~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~---~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~ 403 (429)
T PRK01742 332 GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS---T--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSA 403 (429)
T ss_pred cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC---C--CCCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence 1111 3468999999998887764 5669998887543222 1 12345789999999999998998888876 3
Q ss_pred CCceeeeeeccCCCCceEEeCCC
Q 036585 249 SGKEVASWMSFDTEPPVIKWAPG 271 (304)
Q Consensus 249 ~~~~~~~~~~~~~~i~~~~~~~~ 271 (304)
+++.+..+..|.+.+...+|+|-
T Consensus 404 ~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 404 DGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCCceEEccCCCCCCCCcccCCC
Confidence 67888888888888999999984
No 189
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.85 E-value=2.5e-19 Score=132.79 Aligned_cols=265 Identities=13% Similarity=0.220 Sum_probs=184.7
Q ss_pred eEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc
Q 036585 20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK 99 (304)
Q Consensus 20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~ 99 (304)
...++|+|+++|+++.- .+.|-|.++.+..+.+.. -..|..+.|..+.-+++++... ++.|.+|++...+-...+.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk--~~~vqvwsl~Qpew~ckId 88 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYK--DPKVQVWSLVQPEWYCKID 88 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeec--cceEEEEEeecceeEEEec
Confidence 56899999999999876 788999888776655543 3478889999999988888775 8899999999999888888
Q ss_pred cccccEEEEEEcCCCC-EEEEcccCCeEEEEeCCcceeeceEEE-eccceeEecCCCeEE--------------------
Q 036585 100 GHHDRVVLLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRV-QGRPAAAYDDQGLVF-------------------- 157 (304)
Q Consensus 100 ~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------------------- 157 (304)
....++.++.|+|+|+ .|.+...+-.|.+|.+.+.+....... .+....++++++.+.
T Consensus 89 eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W 168 (447)
T KOG4497|consen 89 EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW 168 (447)
T ss_pred cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH
Confidence 8889999999999996 556677789999999987765433211 112233444444332
Q ss_pred ------------------EecCCCeEEEEe-------cCC-CCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEE
Q 036585 158 ------------------GYEKGPLDIFSV-------GGD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY 211 (304)
Q Consensus 158 ------------------~~~~~~~~~~~~-------~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 211 (304)
.-++.-+.+|+- .-+ .-.+..++|+|.++++++|+.|+.+++.+--+.+...++
T Consensus 169 ~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~ef 248 (447)
T KOG4497|consen 169 ILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEF 248 (447)
T ss_pred HHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhh
Confidence 111112222221 111 245778899999999999999999888652221111100
Q ss_pred ------------------------------------------------------------E---eCCCCCCcceEEEEcC
Q 036585 212 ------------------------------------------------------------N---VKPVSRNSTLEASFSP 228 (304)
Q Consensus 212 ------------------------------------------------------------~---~~~~~~~~i~~~~~s~ 228 (304)
+ ..+.....+.-++||+
T Consensus 249 lhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~ 328 (447)
T KOG4497|consen 249 LHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC 328 (447)
T ss_pred ccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC
Confidence 0 0011223456689999
Q ss_pred CCcEEEEecCC--CcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCC
Q 036585 229 EGMFVISGSGD--GSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDL 289 (304)
Q Consensus 229 ~~~~l~~~~~d--g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~ 289 (304)
|..++++-... +.+-+||+++.+....+. ...+|....|+|....|+.+... +.+|.+..
T Consensus 329 Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 329 DSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred CceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCC
Confidence 99999987533 579999999877655553 55689999999998777766655 56665554
No 190
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.85 E-value=2.6e-18 Score=129.11 Aligned_cols=194 Identities=17% Similarity=0.227 Sum_probs=154.4
Q ss_pred eeEeecccCcEEEEeeCCC--eEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee
Q 036585 19 EILQSMEVGIYLVTASDDE--SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR 96 (304)
Q Consensus 19 ~~i~~~~~~~~l~~~~~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~ 96 (304)
.++..+-...++|..+.+. .+++.+.+.+..+..+.... +|.++.+ +.++|++.- ...|+|||+.+.+.++
T Consensus 48 ~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt-~IL~Vrm--Nr~RLvV~L----ee~IyIydI~~MklLh 120 (391)
T KOG2110|consen 48 SIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIFFPT-SILAVRM--NRKRLVVCL----EESIYIYDIKDMKLLH 120 (391)
T ss_pred EEEEeecccceeEEEecCCCceEEEEEcccCceEEEEecCC-ceEEEEE--ccceEEEEE----cccEEEEecccceeeh
Confidence 3445555556666666543 48889988888777776544 7888888 566788777 4569999999999888
Q ss_pred eccc---ccccEEEEEEcCCCCEEEEcc--cCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecC
Q 036585 97 YFKG---HHDRVVLLSLCSSKDCFISGS--LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGG 171 (304)
Q Consensus 97 ~~~~---~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (304)
++.. +...+.++.+++.+.+++.-+ ..|.|.+||+.+-+....+. .
T Consensus 121 TI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~-----------------------------a 171 (391)
T KOG2110|consen 121 TIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN-----------------------------A 171 (391)
T ss_pred hhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEE-----------------------------e
Confidence 7763 444567777777777888643 46899999998887776665 5
Q ss_pred CCCCceEEEEecCCcEEEEeeCCCe-EEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCC
Q 036585 172 DISDANVVKFSNDGRLMLLTTMEGH-IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRS 249 (304)
Q Consensus 172 ~~~~v~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~ 249 (304)
|.+.+.+++|+++|.+||+++..|+ ||||.+.+|+.+.+|.... ....|.+++|+|++++|++.+..++|++|.+..
T Consensus 172 H~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~-~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 172 HKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT-YPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred cCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc-eeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 8889999999999999999999997 8999999999999998543 356789999999999999999999999998864
No 191
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=4.5e-18 Score=121.04 Aligned_cols=231 Identities=13% Similarity=0.201 Sum_probs=162.9
Q ss_pred eecceeeEeeccc-CcEEEEeeCCCeEEEEecCCcce------eee--eccc-----ccceeEEEEccCCCeEEEEecCC
Q 036585 14 LELSEEILQSMEV-GIYLVTASDDESIRLYDVTAATC------LKT--INSK-----KYGVDLVCFTSHPTTVIYSSKNG 79 (304)
Q Consensus 14 ~~~~~~~i~~~~~-~~~l~~~~~d~~i~vw~~~~~~~------~~~--~~~~-----~~~v~~~~~~~~~~~l~~~~~~~ 79 (304)
.+.|+..+..+.. .++|++++ ||.|+=|....... +-. ...| --.|++|...|..+.++.++.
T Consensus 58 eqahdgpiy~~~f~d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgG-- 134 (325)
T KOG0649|consen 58 EQAHDGPIYYLAFHDDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGG-- 134 (325)
T ss_pred ccccCCCeeeeeeehhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecC--
Confidence 3677777776665 44555555 69999998753221 111 1112 236889999998887777776
Q ss_pred CCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEe
Q 036585 80 WDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGY 159 (304)
Q Consensus 80 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (304)
|+.++-||+++|+..+.+++|++.|.++.-......+++|+.||++|+||.++.+.+..+.....+...-
T Consensus 135 -D~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lR--------- 204 (325)
T KOG0649|consen 135 -DGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLR--------- 204 (325)
T ss_pred -CeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcC---------
Confidence 9999999999999999999999999999987666789999999999999999999988876544332110
Q ss_pred cCCCeEEEEecCCC-CCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecC
Q 036585 160 EKGPLDIFSVGGDI-SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG 238 (304)
Q Consensus 160 ~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 238 (304)
.|. .-|.+++. +..+|++|+. ..+.+|.+++.++...+. -..++..+.|.. +.+++++.
T Consensus 205 -----------p~~g~wigala~--~edWlvCGgG-p~lslwhLrsse~t~vfp----ipa~v~~v~F~~--d~vl~~G~ 264 (325)
T KOG0649|consen 205 -----------PDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSESTCVFP----IPARVHLVDFVD--DCVLIGGE 264 (325)
T ss_pred -----------cccCceeEEEec--cCceEEecCC-CceeEEeccCCCceEEEe----cccceeEeeeec--ceEEEecc
Confidence 111 22444444 5667777654 478999999999999988 456777788854 47888888
Q ss_pred CCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEe
Q 036585 239 DGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTG 278 (304)
Q Consensus 239 dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 278 (304)
.+.|.-|.+ +|......+......++..|+..--.+++.
T Consensus 265 g~~v~~~~l-~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ 303 (325)
T KOG0649|consen 265 GNHVQSYTL-NGVLQANIPVESTACYSASWQTSPIKFISI 303 (325)
T ss_pred ccceeeeee-ccEEEEeccCCccceeeecccCCceEEEEe
Confidence 888999987 455444444444445555565443333333
No 192
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.84 E-value=1.8e-19 Score=141.47 Aligned_cols=227 Identities=17% Similarity=0.289 Sum_probs=158.2
Q ss_pred cCcEEEEeeCCCeEEEEecCCccee------eeecccccceeEEEE-----ccCCCeEEEEecCCCCCceEEEEccCcee
Q 036585 26 VGIYLVTASDDESIRLYDVTAATCL------KTINSKKYGVDLVCF-----TSHPTTVIYSSKNGWDESLRLLSLHDNKY 94 (304)
Q Consensus 26 ~~~~l~~~~~d~~i~vw~~~~~~~~------~~~~~~~~~v~~~~~-----~~~~~~l~~~~~~~~d~~i~vwd~~~~~~ 94 (304)
.|++|+..-. ..+.+|+...+..+ ..+.+. ...|-+| .|.+--++.+-. -|.+++.|....+.
T Consensus 134 ~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt--~P~cHdfn~~~a~~~g~dllIGf~---tGqvq~idp~~~~~ 207 (636)
T KOG2394|consen 134 KGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGT--SPTCHDFNSFTATPKGLDLLIGFT---TGQVQLIDPINFEV 207 (636)
T ss_pred CCCEEEEecC-CeEEEEEccCcchhccchhhhcccCC--CCceecccccccCCCCcceEEeec---cCceEEecchhhHH
Confidence 3666665543 35888887743211 112221 2333344 356667888877 88999998876332
Q ss_pred eeecc----cccccEEEEEEcCC-CCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEe--cCCCeEE-----EecCC
Q 036585 95 SRYFK----GHHDRVVLLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAY--DDQGLVF-----GYEKG 162 (304)
Q Consensus 95 ~~~~~----~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~ 162 (304)
.+.+. -.+..|+|+.|-|. ...++++-.+|.+++||.+...... .+.... .++...+ .....
T Consensus 208 sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t------~p~~~~~k~~~~f~i~t~ksk~~rN 281 (636)
T KOG2394|consen 208 SKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGAT------APSYQALKDGDQFAILTSKSKKTRN 281 (636)
T ss_pred HHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCC------CCcccccCCCCeeEEeeeeccccCC
Confidence 22221 13468999999994 4577777889999999873211110 011111 1111111 11224
Q ss_pred CeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcE
Q 036585 163 PLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSV 242 (304)
Q Consensus 163 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 242 (304)
++..|.+.. +.|+.++|+|||++||+.+.||.++|||..+.+++..++ ..-+...|++|||||+||++|++|..|
T Consensus 282 Pv~~w~~~~--g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk---SYFGGLLCvcWSPDGKyIvtGGEDDLV 356 (636)
T KOG2394|consen 282 PVARWHIGE--GSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK---SYFGGLLCVCWSPDGKYIVTGGEDDLV 356 (636)
T ss_pred ccceeEecc--ccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH---hhccceEEEEEcCCccEEEecCCcceE
Confidence 555555443 489999999999999999999999999999988877766 466789999999999999999999999
Q ss_pred EEEecCCCceeeeeeccCCCCceEEeC
Q 036585 243 HAWSVRSGKEVASWMSFDTEPPVIKWA 269 (304)
Q Consensus 243 ~v~d~~~~~~~~~~~~~~~~i~~~~~~ 269 (304)
.||.+...+.+..-.+|..+|+.++|.
T Consensus 357 tVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 357 TVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEEEeccceEEEeccccccceeeEeec
Confidence 999999999999999999999999998
No 193
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.84 E-value=3.9e-19 Score=129.49 Aligned_cols=231 Identities=14% Similarity=0.179 Sum_probs=165.3
Q ss_pred cceeeEeecccC-----cEEEEeeCCCeEEEEecCCc--ce--eeeec-----ccccceeEEEEcc-CCCeEEEEecCCC
Q 036585 16 LSEEILQSMEVG-----IYLVTASDDESIRLYDVTAA--TC--LKTIN-----SKKYGVDLVCFTS-HPTTVIYSSKNGW 80 (304)
Q Consensus 16 ~~~~~i~~~~~~-----~~l~~~~~d~~i~vw~~~~~--~~--~~~~~-----~~~~~v~~~~~~~-~~~~l~~~~~~~~ 80 (304)
+...-+.|.|+. ++|||++. .+|+|.+... +. ...+. .+..++++..|+. +.+++.+.+-
T Consensus 97 YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi--- 171 (364)
T KOG0290|consen 97 YPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI--- 171 (364)
T ss_pred CCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc---
Confidence 344456777773 46776653 6999998732 21 11121 3456899999987 4556666666
Q ss_pred CCceEEEEccCcee---eeecccccccEEEEEEcCCC-CEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeE
Q 036585 81 DESLRLLSLHDNKY---SRYFKGHHDRVVLLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLV 156 (304)
Q Consensus 81 d~~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (304)
|-+..|||++++.. ...+-.|..+|..++|...+ +.|++.+.||.+|++|++...-...+-..
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~------------- 238 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYED------------- 238 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecC-------------
Confidence 99999999998743 44566899999999999854 48999999999999999876443322111
Q ss_pred EEecCCCeEEEEecCCCCCceEEEEecC-CcEEEEeeC-CCeEEEEEcCCC-ceeEEEEeCCCCCCcceEEEEcCC-CcE
Q 036585 157 FGYEKGPLDIFSVGGDISDANVVKFSND-GRLMLLTTM-EGHIHVLDSFRG-TLLSTYNVKPVSRNSTLEASFSPE-GMF 232 (304)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~-dg~i~~~d~~~~-~~~~~~~~~~~~~~~i~~~~~s~~-~~~ 232 (304)
.....+...++|+++ -+++++-.. ...|.+.|++.. .++.+++ .|.+.|+.++|.|. ...
T Consensus 239 -------------p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~---~H~a~VNgIaWaPhS~~h 302 (364)
T KOG0290|consen 239 -------------PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLR---NHQASVNGIAWAPHSSSH 302 (364)
T ss_pred -------------CCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhh---cCcccccceEecCCCCce
Confidence 112356677888874 466776544 457999999864 4566666 79999999999994 568
Q ss_pred EEEecCCCcEEEEecCCCc------eeeeeeccCCCCceEEeCC-CCcEEEEecCc
Q 036585 233 VISGSGDGSVHAWSVRSGK------EVASWMSFDTEPPVIKWAP-GSLMFVTGSSE 281 (304)
Q Consensus 233 l~~~~~dg~i~v~d~~~~~------~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~d 281 (304)
|++++.|..+.+||+...- ++..+. -.+.|+.+.|+| ...+++.+...
T Consensus 303 ictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 303 ICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred eeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEecC
Confidence 9999999999999997532 222233 567899999996 45688877766
No 194
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.84 E-value=8.5e-19 Score=144.07 Aligned_cols=245 Identities=14% Similarity=0.185 Sum_probs=173.0
Q ss_pred CeEEEEecCCcc-eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee--eee----cccccccEEEEE
Q 036585 37 ESIRLYDVTAAT-CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY--SRY----FKGHHDRVVLLS 109 (304)
Q Consensus 37 ~~i~vw~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~--~~~----~~~~~~~v~~~~ 109 (304)
+.+.+|++.... +...+. ....|.++.|+|....+++|+.. +|.|.+||+..+.. ... ...|..+++.+.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y--~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vv 298 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCY--NGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVV 298 (555)
T ss_pred ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeecc--CceEEEEEccCCCCCCCcccccccccCCcCeEEEE
Confidence 479999998763 333333 45689999999966655555542 99999999987754 222 235888999999
Q ss_pred EcCCC--CEEEEcccCCeEEEEeCCcceeece-E-----E--------EeccceeEe---cCCCeEEEecCCCeEEE---
Q 036585 110 LCSSK--DCFISGSLDRTVLLWDQRAEKCQGL-L-----R--------VQGRPAAAY---DDQGLVFGYEKGPLDIF--- 167 (304)
Q Consensus 110 ~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~-~-----~--------~~~~~~~~~---~~~~~~~~~~~~~~~~~--- 167 (304)
|..+. .-|++++.||.|..|+++.-..... . . ......+.+ .++.++++.+.|.+..-
T Consensus 299 W~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 299 WLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK 378 (555)
T ss_pred EeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence 98644 4499999999999998775433111 0 0 011112222 34456666665555441
Q ss_pred --------------EecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcC-CCceeEEEEeCCCCCCcceEEEEcCCC-c
Q 036585 168 --------------SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF-RGTLLSTYNVKPVSRNSTLEASFSPEG-M 231 (304)
Q Consensus 168 --------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~-~ 231 (304)
....|.++|+++.++|=+..++..+.|.++++|... ...++..+. .+...+++++|||-. .
T Consensus 379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~---~~~~~v~~vaWSptrpa 455 (555)
T KOG1587|consen 379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD---SSPDYVTDVAWSPTRPA 455 (555)
T ss_pred CCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhh---hccceeeeeEEcCcCce
Confidence 122467889999999977666666669999999987 556666665 456679999999965 5
Q ss_pred EEEEecCCCcEEEEecCC--CceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEecc
Q 036585 232 FVISGSGDGSVHAWSVRS--GKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIP 287 (304)
Q Consensus 232 ~l~~~~~dg~i~v~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~ 287 (304)
.++++..||.|.+||+.. .+++.+.+.+....+.+.|++.|+.|+.|... +.+|.+
T Consensus 456 vF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 456 VFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKL 515 (555)
T ss_pred EEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence 677888899999999964 34555555566777888999999999999988 566666
No 195
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.84 E-value=1.4e-19 Score=142.19 Aligned_cols=203 Identities=10% Similarity=0.092 Sum_probs=158.6
Q ss_pred CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEE
Q 036585 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVV 106 (304)
Q Consensus 27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~ 106 (304)
.+.++.++.||.+.+.+ +.++....+..|.+.+.+-.|+|+|.-|++++. ||.|++|.- +|....++.....+|+
T Consensus 75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GE---DG~iKiWSr-sGMLRStl~Q~~~~v~ 149 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGE---DGVIKIWSR-SGMLRSTVVQNEESIR 149 (737)
T ss_pred cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecC---CceEEEEec-cchHHHHHhhcCceeE
Confidence 35788899999999988 567888889999999999999999999999999 999999984 4555555666778999
Q ss_pred EEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCc
Q 036585 107 LLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGR 186 (304)
Q Consensus 107 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 186 (304)
|++|.|+.+.++.+.. +.+.|=.+..... +...+.|.+-|.++.|++...
T Consensus 150 c~~W~p~S~~vl~c~g-~h~~IKpL~~n~k-----------------------------~i~WkAHDGiiL~~~W~~~s~ 199 (737)
T KOG1524|consen 150 CARWAPNSNSIVFCQG-GHISIKPLAANSK-----------------------------IIRWRAHDGLVLSLSWSTQSN 199 (737)
T ss_pred EEEECCCCCceEEecC-CeEEEeecccccc-----------------------------eeEEeccCcEEEEeecCcccc
Confidence 9999998775555433 4555544433222 223346888999999999999
Q ss_pred EEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceE
Q 036585 187 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVI 266 (304)
Q Consensus 187 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~ 266 (304)
.+++|+.|-..++||. .|..+..-. .|+.+|++++|.|+ +.++.++. +++|+ -....+.|..+
T Consensus 200 lI~sgGED~kfKvWD~-~G~~Lf~S~---~~ey~ITSva~npd-~~~~v~S~-nt~R~-----------~~p~~GSifnl 262 (737)
T KOG1524|consen 200 IIASGGEDFRFKIWDA-QGANLFTSA---AEEYAITSVAFNPE-KDYLLWSY-NTARF-----------SSPRVGSIFNL 262 (737)
T ss_pred ceeecCCceeEEeecc-cCcccccCC---hhccceeeeeeccc-cceeeeee-eeeee-----------cCCCccceEEE
Confidence 9999999999999995 455555544 58999999999999 55665653 23441 12346789999
Q ss_pred EeCCCCcEEEEecCc
Q 036585 267 KWAPGSLMFVTGSSE 281 (304)
Q Consensus 267 ~~~~~~~~l~s~~~d 281 (304)
+||+||..++.|...
T Consensus 263 sWS~DGTQ~a~gt~~ 277 (737)
T KOG1524|consen 263 SWSADGTQATCGTST 277 (737)
T ss_pred EEcCCCceeeccccC
Confidence 999999999998887
No 196
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.83 E-value=4.3e-18 Score=140.53 Aligned_cols=222 Identities=15% Similarity=0.127 Sum_probs=149.6
Q ss_pred CeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCE
Q 036585 37 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDC 116 (304)
Q Consensus 37 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 116 (304)
..|.+||.. +...+.+..+...+...+|+|+++.|++.+..+.+..|++||+.+++... +....+...+..|+|+|+.
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 358899976 44445566667789999999999999988753225679999998876533 3334445567899999987
Q ss_pred EE-EcccCC--eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC
Q 036585 117 FI-SGSLDR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM 193 (304)
Q Consensus 117 l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 193 (304)
++ +.+.+| .|++||+.+++..... .+.......+|+|||+.|+..+.
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~~~lt------------------------------~~~~~~~~~~~spDG~~l~f~sd 311 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQLTRLT------------------------------NHFGIDTEPTWAPDGKSIYFTSD 311 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCeEECc------------------------------cCCCCccceEECCCCCEEEEEEC
Confidence 75 444444 6999999876543221 12223456899999998887764
Q ss_pred -CC--eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCC---cEEEEecCCCceeeeeeccCCCCceEE
Q 036585 194 -EG--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG---SVHAWSVRSGKEVASWMSFDTEPPVIK 267 (304)
Q Consensus 194 -dg--~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~i~~~~ 267 (304)
+| .|+++|+.+++... +.. ........+|+|||++|+..+.++ .|.+||+.+++.. .+. +........
T Consensus 312 ~~g~~~iy~~dl~~g~~~~-lt~---~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~ 385 (433)
T PRK04922 312 RGGRPQIYRVAASGGSAER-LTF---QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPS 385 (433)
T ss_pred CCCCceEEEEECCCCCeEE-eec---CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCce
Confidence 44 47777877765433 321 223344689999999988765433 5999999887654 333 333456789
Q ss_pred eCCCCcEEEEecCc-----eEEeccCCccccccc
Q 036585 268 WAPGSLMFVTGSSE-----LSFWIPDLSKLGAYV 296 (304)
Q Consensus 268 ~~~~~~~l~s~~~d-----~~iw~~~~~~~~~~~ 296 (304)
|+|||++++..+.+ +.+++.+......+.
T Consensus 386 ~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~ 419 (433)
T PRK04922 386 FAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLV 419 (433)
T ss_pred ECCCCCEEEEEEecCCceEEEEEECCCCceEEcc
Confidence 99999988776654 445555555444443
No 197
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=3.6e-19 Score=131.68 Aligned_cols=233 Identities=15% Similarity=0.261 Sum_probs=171.8
Q ss_pred cEEEEeeCCCeEEEEecCCc---ceeeeec--ccccceeEEEEccC----CCeEEEEecCCCCCceEEEEccCceeeeec
Q 036585 28 IYLVTASDDESIRLYDVTAA---TCLKTIN--SKKYGVDLVCFTSH----PTTVIYSSKNGWDESLRLLSLHDNKYSRYF 98 (304)
Q Consensus 28 ~~l~~~~~d~~i~vw~~~~~---~~~~~~~--~~~~~v~~~~~~~~----~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~ 98 (304)
..+|+++.+ .+.+|+.... ..++.+. .|......++|+-+ ..++++++. -|.|+|.|+.+++....+
T Consensus 56 ~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~---~GvIrVid~~~~~~~~~~ 131 (385)
T KOG1034|consen 56 QVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGY---LGVIRVIDVVSGQCSKNY 131 (385)
T ss_pred ceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecc---eeEEEEEecchhhhccce
Confidence 456676654 6889987643 3344433 25667788888764 346777776 999999999999999999
Q ss_pred ccccccEEEEEEcCC-CCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCce
Q 036585 99 KGHHDRVVLLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDAN 177 (304)
Q Consensus 99 ~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 177 (304)
.+|...|..+.++|+ .+++++++.|..|++|++++..++..+..- ++|...|.
T Consensus 132 ~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~--------------------------egHrdeVL 185 (385)
T KOG1034|consen 132 RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGV--------------------------EGHRDEVL 185 (385)
T ss_pred eccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccc--------------------------ccccCcEE
Confidence 999999999999995 579999999999999999999988776422 47899999
Q ss_pred EEEEecCCcEEEEeeCCCeEEEEEcCCCceeEE-------------------------EEeCCCCCCcceEEEEcCCCcE
Q 036585 178 VVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLST-------------------------YNVKPVSRNSTLEASFSPEGMF 232 (304)
Q Consensus 178 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-------------------------~~~~~~~~~~i~~~~~s~~~~~ 232 (304)
++.|+++|.++++++.|.+|++|++...+.... +.....|..+|-|+.|- |++
T Consensus 186 SvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ 263 (385)
T KOG1034|consen 186 SVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDF 263 (385)
T ss_pred EEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhh
Confidence 999999999999999999999999874321111 11112355566666663 578
Q ss_pred EEEecCCCcEEEEecCC-Cc-------------eeeeeeccCCCCceEE--eCCCCcEEEEecCc--eEEeccCCccc
Q 036585 233 VISGSGDGSVHAWSVRS-GK-------------EVASWMSFDTEPPVIK--WAPGSLMFVTGSSE--LSFWIPDLSKL 292 (304)
Q Consensus 233 l~~~~~dg~i~v~d~~~-~~-------------~~~~~~~~~~~i~~~~--~~~~~~~l~s~~~d--~~iw~~~~~~~ 292 (304)
+++-+-++.|..|.... .+ .+.++.-....|+-+. |.|-+++||.|... +.+|+++....
T Consensus 264 ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 264 ILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEP 341 (385)
T ss_pred eeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCC
Confidence 99988899999998721 11 1233333444555555 55667889988877 77787765443
No 198
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.83 E-value=6.1e-18 Score=139.03 Aligned_cols=215 Identities=14% Similarity=0.124 Sum_probs=146.5
Q ss_pred eeEeecccCcEEEEeeC---CCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceee
Q 036585 19 EILQSMEVGIYLVTASD---DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYS 95 (304)
Q Consensus 19 ~~i~~~~~~~~l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~ 95 (304)
....++|||+.|+..+. +..+.+|++.+++... +......+..+.|+|||+.|+.......+..|++||+.+++..
T Consensus 202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~ 280 (429)
T PRK03629 202 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR 280 (429)
T ss_pred eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE
Confidence 45789999999887643 3579999998875432 2222233556899999999987644211346999999887654
Q ss_pred eecccccccEEEEEEcCCCCEEEEcccC-C--eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCC
Q 036585 96 RYFKGHHDRVVLLSLCSSKDCFISGSLD-R--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGD 172 (304)
Q Consensus 96 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (304)
+. ..+...+....|+|+|+.|+..+.+ + .|+++|+.++.... +. ..
T Consensus 281 ~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~-lt-----------------------------~~ 329 (429)
T PRK03629 281 QV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR-IT-----------------------------WE 329 (429)
T ss_pred Ec-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE-ee-----------------------------cC
Confidence 43 3344567889999999988776653 4 44455665543321 11 11
Q ss_pred CCCceEEEEecCCcEEEEeeCC---CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCc---EEEEe
Q 036585 173 ISDANVVKFSNDGRLMLLTTME---GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGS---VHAWS 246 (304)
Q Consensus 173 ~~~v~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~---i~v~d 246 (304)
........|+|||++++..+.+ ..|.+||+.+++.. .+.. ........|+|||++|+.++.++. +.+++
T Consensus 330 ~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~----~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~ 404 (429)
T PRK03629 330 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD----TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVS 404 (429)
T ss_pred CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC----CCCCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence 1234568899999998876543 35889999887643 2321 122345789999999998887764 67777
Q ss_pred cCCCceeeeeeccCCCCceEEeCCC
Q 036585 247 VRSGKEVASWMSFDTEPPVIKWAPG 271 (304)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~~~~~~~~ 271 (304)
+ +++....+.+|.+.+...+|+|-
T Consensus 405 ~-~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 405 T-DGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred C-CCCCeEECccCCCCcCCcccCCC
Confidence 6 56666778788889999999983
No 199
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.82 E-value=1.7e-18 Score=127.78 Aligned_cols=205 Identities=15% Similarity=0.144 Sum_probs=160.7
Q ss_pred cccceeEEEEccCCCeEEEEecCCCCCceEEEEccCce---eeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCC
Q 036585 56 KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK---YSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQR 132 (304)
Q Consensus 56 ~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 132 (304)
-..+|+|.+|++|...++++.. ...|.||.....+ ..++++.|...|+.++|+|..+.|++++.|..-++|...
T Consensus 9 ~~~pitchAwn~drt~iAv~~~---~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPN---NHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred ccCceeeeeecCCCceEEeccC---CceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 3468999999999999999998 8899999987654 678899999999999999999999999999999999984
Q ss_pred -cceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEE
Q 036585 133 -AEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY 211 (304)
Q Consensus 133 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 211 (304)
.++-...+.. ..++...+++.|+|.++.|++|+....|.||-++..+.-..-
T Consensus 86 ~~~~WkptlvL---------------------------lRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVs 138 (361)
T KOG1523|consen 86 SGGTWKPTLVL---------------------------LRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVS 138 (361)
T ss_pred CCCeeccceeE---------------------------EEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehh
Confidence 3333322221 135578899999999999999999999999887654322110
Q ss_pred -EeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecC-----C-------------CceeeeeeccCCCCceEEeCCCC
Q 036585 212 -NVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVR-----S-------------GKEVASWMSFDTEPPVIKWAPGS 272 (304)
Q Consensus 212 -~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~-----~-------------~~~~~~~~~~~~~i~~~~~~~~~ 272 (304)
.........|+++.|+|++-+|++|+.|+..||+..- . |+++.++....+.+..+.|+|+|
T Consensus 139 KhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG 218 (361)
T KOG1523|consen 139 KHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG 218 (361)
T ss_pred hhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC
Confidence 0112467889999999999999999999999999652 1 12233444566789999999999
Q ss_pred cEEEEecCc--eEEeccCCc
Q 036585 273 LMFVTGSSE--LSFWIPDLS 290 (304)
Q Consensus 273 ~~l~s~~~d--~~iw~~~~~ 290 (304)
..|+-.+.| +.+=+....
T Consensus 219 ~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 219 NRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred CEeeEecCCCceEEeecCCC
Confidence 999999988 666555443
No 200
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.82 E-value=2.3e-17 Score=136.39 Aligned_cols=205 Identities=13% Similarity=0.104 Sum_probs=143.6
Q ss_pred eEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEE
Q 036585 38 SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCF 117 (304)
Q Consensus 38 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 117 (304)
.|.++|.. +...+.+..|...+...+|+|||+.|+..+....+..|++||+.+++.. .+..+.+.+....|+|+|+.|
T Consensus 183 ~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~l 260 (435)
T PRK05137 183 RLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKV 260 (435)
T ss_pred EEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEE
Confidence 68888875 4445566677788999999999999998875322678999999887653 344466677889999999876
Q ss_pred E-EcccCC--eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC-
Q 036585 118 I-SGSLDR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM- 193 (304)
Q Consensus 118 ~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 193 (304)
+ +.+.++ .|++||++++...... .+........|+|||+.++..+.
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~~~~~Lt------------------------------~~~~~~~~~~~spDG~~i~f~s~~ 310 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSGTTTRLT------------------------------DSPAIDTSPSYSPDGSQIVFESDR 310 (435)
T ss_pred EEEEecCCCceEEEEECCCCceEEcc------------------------------CCCCccCceeEcCCCCEEEEEECC
Confidence 5 445555 4777788776543221 12234556899999998887764
Q ss_pred CC--eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC---CcEEEEecCCCceeeeeeccCCCCceEEe
Q 036585 194 EG--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD---GSVHAWSVRSGKEVASWMSFDTEPPVIKW 268 (304)
Q Consensus 194 dg--~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~i~~~~~ 268 (304)
+| .|+++|+..++... +. .....+....|+|||++|+....+ ..|.+||+..+.. ..+. ....+..+.|
T Consensus 311 ~g~~~Iy~~d~~g~~~~~-lt---~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~ 384 (435)
T PRK05137 311 SGSPQLYVMNADGSNPRR-IS---FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTW 384 (435)
T ss_pred CCCCeEEEEECCCCCeEE-ee---cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeE
Confidence 33 68888987665433 33 134455668899999999876543 3688889765443 3332 2335778899
Q ss_pred CCCCcEEEEecC
Q 036585 269 APGSLMFVTGSS 280 (304)
Q Consensus 269 ~~~~~~l~s~~~ 280 (304)
+|||+.|+..+.
T Consensus 385 spDG~~i~~~~~ 396 (435)
T PRK05137 385 APNGRVIMFFRQ 396 (435)
T ss_pred CCCCCEEEEEEc
Confidence 999998876554
No 201
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.82 E-value=5.2e-19 Score=134.22 Aligned_cols=205 Identities=16% Similarity=0.232 Sum_probs=155.0
Q ss_pred cceeEEEEccCCC-eEEEEecCCCCCceEEEEccCce---------eeeecccccccEEEEEEcCCCCEEEEcccCCeEE
Q 036585 58 YGVDLVCFTSHPT-TVIYSSKNGWDESLRLLSLHDNK---------YSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVL 127 (304)
Q Consensus 58 ~~v~~~~~~~~~~-~l~~~~~~~~d~~i~vwd~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 127 (304)
.++..+.|.++.. .+++++. |..|++|-++.++ ....+..|...|+++.|+|+|..|++|+.+|.+.
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~---D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~ 90 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGG---DKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVF 90 (434)
T ss_pred CceEEEEeccCcccceecccC---ccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEE
Confidence 4899999998877 8999988 9999999886542 3456778999999999999999999999999999
Q ss_pred EEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCce
Q 036585 128 LWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL 207 (304)
Q Consensus 128 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 207 (304)
+|-...-.. +.... ... .....-+....+.+|...+..++|+|++.++++++.|..+++||+..|+.
T Consensus 91 lWk~~~~~~---~~~d~--e~~--------~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l 157 (434)
T KOG1009|consen 91 LWKQGDVRI---FDADT--EAD--------LNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL 157 (434)
T ss_pred EEEecCcCC---ccccc--hhh--------hCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee
Confidence 998663111 00000 000 00001122334557889999999999999999999999999999999999
Q ss_pred eEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeee-------------------ccCC----CCc
Q 036585 208 LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWM-------------------SFDT----EPP 264 (304)
Q Consensus 208 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-------------------~~~~----~i~ 264 (304)
...+. .|...+..++|.|-++++++-+.|...+.+.+...+.+.... .|.. -..
T Consensus 158 ~~~~~---dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 158 LAILD---DHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred Eeecc---ccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence 98888 799999999999999999999999877777765433221110 1221 235
Q ss_pred eEEeCCCCcEEEEecCc
Q 036585 265 VIKWAPGSLMFVTGSSE 281 (304)
Q Consensus 265 ~~~~~~~~~~l~s~~~d 281 (304)
.++|+|+|.+|++.+.-
T Consensus 235 RlsfTPdG~llvtPag~ 251 (434)
T KOG1009|consen 235 RLSFTPDGSLLVTPAGL 251 (434)
T ss_pred hcccCCCCcEEEcccce
Confidence 68899999999886543
No 202
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.82 E-value=2.3e-17 Score=135.82 Aligned_cols=207 Identities=13% Similarity=0.120 Sum_probs=136.9
Q ss_pred CeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCE
Q 036585 37 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDC 116 (304)
Q Consensus 37 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 116 (304)
..|.++|.. +...+.+..+...+.+.+|+||++.|+..+.......|.+||+.+++... +....+.+.+..|+|||+.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 357777764 44445565677789999999999999988753224569999999886543 3333455678999999998
Q ss_pred EE-EcccCCeEEEEeC--CcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC
Q 036585 117 FI-SGSLDRTVLLWDQ--RAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM 193 (304)
Q Consensus 117 l~-~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 193 (304)
|+ +.+.++...+|.+ ..+... .+. .+........|+|||+.|+..+.
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~~~-~lt-----------------------------~~~~~~~~~~wSpDG~~l~f~s~ 303 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSGLR-RLT-----------------------------QSSGIDTEPFFSPDGRSIYFTSD 303 (427)
T ss_pred EEEEEccCCCceEEEEECCCCCcE-ECC-----------------------------CCCCCCcCeEEcCCCCEEEEEec
Confidence 76 4567776666654 333221 111 12233456789999998886654
Q ss_pred -CCeEEEEE--cCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCC---cEEEEecCCCceeeeeeccCCCCceEE
Q 036585 194 -EGHIHVLD--SFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG---SVHAWSVRSGKEVASWMSFDTEPPVIK 267 (304)
Q Consensus 194 -dg~i~~~d--~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~i~~~~ 267 (304)
+|...+|. +.+++.. .+.. ........+|||||++|+..+.++ .|++||+.+++.. .+.. ........
T Consensus 304 ~~g~~~Iy~~~~~~g~~~-~lt~---~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~-~~~~~~p~ 377 (427)
T PRK02889 304 RGGAPQIYRMPASGGAAQ-RVTF---TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTD-TTRDESPS 377 (427)
T ss_pred CCCCcEEEEEECCCCceE-EEec---CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccC-CCCccCce
Confidence 45555554 4444432 2221 223344678999999998776554 5999999887654 3322 23446789
Q ss_pred eCCCCcEEEEecCc
Q 036585 268 WAPGSLMFVTGSSE 281 (304)
Q Consensus 268 ~~~~~~~l~s~~~d 281 (304)
|+|||+.|+.++.+
T Consensus 378 ~spdg~~l~~~~~~ 391 (427)
T PRK02889 378 FAPNGRYILYATQQ 391 (427)
T ss_pred ECCCCCEEEEEEec
Confidence 99999998887765
No 203
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.81 E-value=9.9e-19 Score=140.29 Aligned_cols=228 Identities=16% Similarity=0.207 Sum_probs=161.0
Q ss_pred ccCcEEE--EeeCCCeEEEEecCCc-cee----eeecccccceeEEEEcc-CCCeEEEEecCCCCCceEEEEccCc----
Q 036585 25 EVGIYLV--TASDDESIRLYDVTAA-TCL----KTINSKKYGVDLVCFTS-HPTTVIYSSKNGWDESLRLLSLHDN---- 92 (304)
Q Consensus 25 ~~~~~l~--~~~~d~~i~vw~~~~~-~~~----~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~d~~i~vwd~~~~---- 92 (304)
.+..++| .++.-|.|-||++... ++. -.+. ....|+.+.|.| |...|++++. ||.|++|.+..+
T Consensus 589 an~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~d---dg~i~lWr~~a~gl~e 664 (1012)
T KOG1445|consen 589 ANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATD---DGQINLWRLTANGLPE 664 (1012)
T ss_pred eccceEEEEecCCCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeeccc---CceEEEEEeccCCCCc
Confidence 3344444 3455689999998753 221 1222 234799999999 6778999998 999999998754
Q ss_pred ---eeeeecccccccEEEEEEcC-CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEE
Q 036585 93 ---KYSRYFKGHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFS 168 (304)
Q Consensus 93 ---~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (304)
.+...+..|...|+++.|+| -...|++++.|-+|++||+++.+....+.
T Consensus 665 ~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~--------------------------- 717 (1012)
T KOG1445|consen 665 NEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLV--------------------------- 717 (1012)
T ss_pred ccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheec---------------------------
Confidence 34566788999999999999 55689999999999999999887665554
Q ss_pred ecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCce-eEEEEeCCCCCCcceEEEEcCCCcEEEEecCC----CcEE
Q 036585 169 VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL-LSTYNVKPVSRNSTLEASFSPEGMFVISGSGD----GSVH 243 (304)
Q Consensus 169 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~ 243 (304)
+|++.|..++|||+|+.+++.+.||+|++|+.++++. +..-... ....--.+.|.-||+++++.+.| ..|.
T Consensus 718 --gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gp--vgtRgARi~wacdgr~viv~Gfdk~SeRQv~ 793 (1012)
T KOG1445|consen 718 --GHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGP--VGTRGARILWACDGRIVIVVGFDKSSERQVQ 793 (1012)
T ss_pred --cCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCC--ccCcceeEEEEecCcEEEEecccccchhhhh
Confidence 7899999999999999999999999999999887653 2222211 22333457788899998887755 4688
Q ss_pred EEecCCCc--eeeeeeccCC-CCceEEeCCCCc-EEEEecCc--eEEecc
Q 036585 244 AWSVRSGK--EVASWMSFDT-EPPVIKWAPGSL-MFVTGSSE--LSFWIP 287 (304)
Q Consensus 244 v~d~~~~~--~~~~~~~~~~-~i~~~~~~~~~~-~l~s~~~d--~~iw~~ 287 (304)
+||..+.. ++.+..-... .+.--.+.+|.. +|++|-.| +.+|.+
T Consensus 794 ~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv 843 (1012)
T KOG1445|consen 794 MYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEV 843 (1012)
T ss_pred hhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEe
Confidence 99876533 3333211111 111122455655 55666666 666654
No 204
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=4.4e-19 Score=139.85 Aligned_cols=221 Identities=14% Similarity=0.145 Sum_probs=157.6
Q ss_pred eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc-cccccEEEEEEcC--CCCEEEEcccCCe
Q 036585 49 CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK-GHHDRVVLLSLCS--SKDCFISGSLDRT 125 (304)
Q Consensus 49 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~dg~ 125 (304)
+.+.+.+|++.|+|++|+.+|.+|++|+. |-.+.|||.-..+.+..+. +|...|.++.|-| +.+.+++|..|..
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSD---D~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSD---DTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCC---cceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcce
Confidence 34678899999999999999999999999 9999999998888777664 8999999999998 5568999999999
Q ss_pred EEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCC-cEEEEeeCCCeEEEEEcCC
Q 036585 126 VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFR 204 (304)
Q Consensus 126 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~ 204 (304)
|+++|+...+.-..-..... .......|...|..++-.|++ ..+.+++.||+|+-||++.
T Consensus 119 i~lfdl~~~~~~~~d~~~~~-------------------~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGMDHGMEE-------------------TTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred EEEEecccccccccccCccc-------------------hhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 99999985432211110000 011112477788889999988 7899999999999999986
Q ss_pred CceeEEE-------EeCCCCCCcceEEEEcCC-CcEEEEecCCCcEEEEecCC--------Cc----------eeeee-e
Q 036585 205 GTLLSTY-------NVKPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRS--------GK----------EVASW-M 257 (304)
Q Consensus 205 ~~~~~~~-------~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~v~d~~~--------~~----------~~~~~-~ 257 (304)
......- ......--...++.++|. ..+|++|+.|-..++||.+. +. ++.-+ .
T Consensus 180 ph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p 259 (758)
T KOG1310|consen 180 PHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSP 259 (758)
T ss_pred CccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecC
Confidence 3221110 000011234668899994 56789999999999999432 11 11111 2
Q ss_pred ccC-----------CCCceEEeCCCCc-EEEEecCc-eEEeccCCcc
Q 036585 258 SFD-----------TEPPVIKWAPGSL-MFVTGSSE-LSFWIPDLSK 291 (304)
Q Consensus 258 ~~~-----------~~i~~~~~~~~~~-~l~s~~~d-~~iw~~~~~~ 291 (304)
+|. ..++-+.|+|+|. +|++-+.+ +.+++++-.+
T Consensus 260 ~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 260 GHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred ccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCC
Confidence 222 1145678999984 66666666 8888886543
No 205
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.81 E-value=7.8e-17 Score=119.00 Aligned_cols=234 Identities=10% Similarity=0.111 Sum_probs=163.4
Q ss_pred EeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCC----CCCceEEEEccCceeee
Q 036585 21 LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG----WDESLRLLSLHDNKYSR 96 (304)
Q Consensus 21 i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~----~d~~i~vwd~~~~~~~~ 96 (304)
+++..|..-++.|..+| .|||+.+.-+.....+.+.+++.-+..---.++++..+.++ ....+.|||=...+++.
T Consensus 11 vs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i~ 89 (346)
T KOG2111|consen 11 VSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCII 89 (346)
T ss_pred EEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcEEE
Confidence 78888888899998877 99999876444333333333322222222445555544321 24689999977777777
Q ss_pred ecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCC-cceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCC
Q 036585 97 YFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQR-AEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISD 175 (304)
Q Consensus 97 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (304)
++. ...+|.++.+.++ .+++.- +..|++|... ..+....+..... ...
T Consensus 90 el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~N---------------------------PkG 138 (346)
T KOG2111|consen 90 ELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSN---------------------------PKG 138 (346)
T ss_pred EEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccC---------------------------CCc
Confidence 776 6789999999865 355443 5789999987 4444444442211 122
Q ss_pred ceEEEEecCCcEEEE-eeCCCeEEEEEcCCCce--eEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCc-EEEEecCCCc
Q 036585 176 ANVVKFSNDGRLMLL-TTMEGHIHVLDSFRGTL--LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGS-VHAWSVRSGK 251 (304)
Q Consensus 176 v~~~~~~~~~~~l~~-~~~dg~i~~~d~~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~v~d~~~~~ 251 (304)
+.+++-..+..+|+. |-.-|.|++-|+...+. ...+. .|...|.+++++.+|..+|+++..|+ |||||..+++
T Consensus 139 lC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~---AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~ 215 (346)
T KOG2111|consen 139 LCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIIN---AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGT 215 (346)
T ss_pred eEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEE---cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCc
Confidence 333333333444554 44579999999977655 24455 69999999999999999999999997 8999999999
Q ss_pred eeeeeec--cCCCCceEEeCCCCcEEEEecCc--eEEeccCC
Q 036585 252 EVASWMS--FDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDL 289 (304)
Q Consensus 252 ~~~~~~~--~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~ 289 (304)
++.+++. ....|.+++|||+..+||++|+. +.|+.+..
T Consensus 216 ~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 216 LLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 9999843 34579999999999999999988 77776644
No 206
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=2.2e-17 Score=124.03 Aligned_cols=223 Identities=16% Similarity=0.288 Sum_probs=155.1
Q ss_pred eEeecccCcEEEEeeCCCeEEEEecCCcceeeeecc-cccceeEEEEccCCC-eEEEEecCCCCCceEEEEccCc----e
Q 036585 20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINS-KKYGVDLVCFTSHPT-TVIYSSKNGWDESLRLLSLHDN----K 93 (304)
Q Consensus 20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~~~~d~~i~vwd~~~~----~ 93 (304)
.+++.+.-..+|++..|-.||+|+-.. +....++. ....|.|++|-|.+. .|++++ .+.|.+|..... .
T Consensus 103 ~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgC----r~gIciW~~s~tln~~r 177 (445)
T KOG2139|consen 103 GVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGC----RAGICIWSDSRTLNANR 177 (445)
T ss_pred eEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeee----cceeEEEEcCccccccc
Confidence 355666555688899999999999765 55555553 346799999999655 455555 788999987531 1
Q ss_pred e----------eeecccccccEEEEEEcCCCCEEEEccc-CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCC
Q 036585 94 Y----------SRYFKGHHDRVVLLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKG 162 (304)
Q Consensus 94 ~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (304)
. +....+| .+|+++.|.+||..+++++. |..|.|||..++..+.....
T Consensus 178 ~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~-------------------- 236 (445)
T KOG2139|consen 178 NIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK-------------------- 236 (445)
T ss_pred ccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc--------------------
Confidence 1 1122344 58999999999999999875 57899999999887655421
Q ss_pred CeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcE
Q 036585 163 PLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSV 242 (304)
Q Consensus 163 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 242 (304)
..+.++-+.|||||.+|++++-|+..++|+........... -..+.|...+|+|+|++|+.+.. |.=
T Consensus 237 ---------glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~---lgsgrvqtacWspcGsfLLf~~s-gsp 303 (445)
T KOG2139|consen 237 ---------GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWI---LGSGRVQTACWSPCGSFLLFACS-GSP 303 (445)
T ss_pred ---------CCCceeeEEEcCCCCEEEEecccceeeeehhcccceeccee---ccCCceeeeeecCCCCEEEEEEc-CCc
Confidence 23467779999999999999999999999654333233333 24558999999999998765542 233
Q ss_pred EEEecCC-Cc--------------eeeee------e---ccCCCCceEEeCCCCcEEEEecCc
Q 036585 243 HAWSVRS-GK--------------EVASW------M---SFDTEPPVIKWAPGSLMFVTGSSE 281 (304)
Q Consensus 243 ~v~d~~~-~~--------------~~~~~------~---~~~~~i~~~~~~~~~~~l~s~~~d 281 (304)
++|.+.- ++ ++..+ . --.+++.+++|.|.|.+||+.-+.
T Consensus 304 ~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 304 RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 4454421 00 01111 0 124678999999999999987654
No 207
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.80 E-value=3.4e-18 Score=134.58 Aligned_cols=179 Identities=13% Similarity=0.245 Sum_probs=141.5
Q ss_pred CeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeE
Q 036585 70 TTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAA 149 (304)
Q Consensus 70 ~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 149 (304)
..++.++. ||.+.+.+- .++....+..|.+.+.+-.|+|+|.-|++++.||.|++|. +++-...++.
T Consensus 76 d~~~i~s~---DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~-------- 142 (737)
T KOG1524|consen 76 DTLLICSN---DGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVV-------- 142 (737)
T ss_pred ceEEEEcC---CceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHh--------
Confidence 35666666 999998874 4566677889999999999999999999999999999997 3443332222
Q ss_pred ecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCC
Q 036585 150 YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE 229 (304)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 229 (304)
....+|.|++|.|+.+.++.+. .+.+.+=-+.....+...+ .|.+-|.++.|+|.
T Consensus 143 ---------------------Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~Wk---AHDGiiL~~~W~~~ 197 (737)
T KOG1524|consen 143 ---------------------QNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWR---AHDGLVLSLSWSTQ 197 (737)
T ss_pred ---------------------hcCceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEe---ccCcEEEEeecCcc
Confidence 1335789999999887665543 4567777776666666666 79999999999999
Q ss_pred CcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc-eEEeccC
Q 036585 230 GMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE-LSFWIPD 288 (304)
Q Consensus 230 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~~ 288 (304)
.+.+++|++|-..+|||. .|..+..-..|..+|++++|+|+ ..++.++.+ .|+=.++
T Consensus 198 s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~nt~R~~~p~ 255 (737)
T KOG1524|consen 198 SNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE-KDYLLWSYNTARFSSPR 255 (737)
T ss_pred ccceeecCCceeEEeecc-cCcccccCChhccceeeeeeccc-cceeeeeeeeeeecCCC
Confidence 999999999999999995 57777777889999999999999 777777776 5543333
No 208
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.80 E-value=1.2e-16 Score=127.90 Aligned_cols=228 Identities=11% Similarity=0.155 Sum_probs=144.3
Q ss_pred cceeeEeecccCcEEEEeeC-CCeEEEEecCCcc----eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEcc
Q 036585 16 LSEEILQSMEVGIYLVTASD-DESIRLYDVTAAT----CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH 90 (304)
Q Consensus 16 ~~~~~i~~~~~~~~l~~~~~-d~~i~vw~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~ 90 (304)
.+...+.++|+|++|++++. ++.|.+|++++.. .+..+.+ ......++++|++++++++... ++.|.+||+.
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~--~~~v~v~d~~ 156 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLK--EDRIRLFTLS 156 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCC--CCEEEEEEEC
Confidence 35567889999998888774 7899999987432 2222322 2356788999999999877763 8999999997
Q ss_pred Cceeeee-----cc-cccccEEEEEEcCCCCEEEEccc-CCeEEEEeCCcc--eeeceEEEeccceeEecCCCeEEEecC
Q 036585 91 DNKYSRY-----FK-GHHDRVVLLSLCSSKDCFISGSL-DRTVLLWDQRAE--KCQGLLRVQGRPAAAYDDQGLVFGYEK 161 (304)
Q Consensus 91 ~~~~~~~-----~~-~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (304)
+...+.. .. ........+.|+|++++++++.. ++.|.+|++... +..........+ ..
T Consensus 157 ~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p------~~------- 223 (330)
T PRK11028 157 DDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMP------AD------- 223 (330)
T ss_pred CCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCC------Cc-------
Confidence 6332211 11 11234567999999999888765 899999999742 221111110000 00
Q ss_pred CCeEEEEecCCCCCceEEEEecCCcEEEEeeC-CCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecC-C
Q 036585 162 GPLDIFSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG-D 239 (304)
Q Consensus 162 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d 239 (304)
..+......+.++|++++++++.. ++.|.+|++.......++............++|+|+|++|+++.. +
T Consensus 224 --------~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~ 295 (330)
T PRK11028 224 --------FSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKS 295 (330)
T ss_pred --------CCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccC
Confidence 001122346889999999999854 689999998654321111111011234557899999999998775 8
Q ss_pred CcEEEEecC--CCce--eeeeeccCCCCceEEe
Q 036585 240 GSVHAWSVR--SGKE--VASWMSFDTEPPVIKW 268 (304)
Q Consensus 240 g~i~v~d~~--~~~~--~~~~~~~~~~i~~~~~ 268 (304)
+.|.+|++. ++.. +..+.. .....+++|
T Consensus 296 ~~v~v~~~~~~~g~l~~~~~~~~-g~~P~~~~~ 327 (330)
T PRK11028 296 HHISVYEIDGETGLLTELGRYAV-GQGPMWVSV 327 (330)
T ss_pred CcEEEEEEcCCCCcEEEcccccc-CCCceEEEE
Confidence 899999874 3332 333332 334455554
No 209
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=2.7e-17 Score=130.44 Aligned_cols=249 Identities=18% Similarity=0.258 Sum_probs=182.0
Q ss_pred ceeeEeecccCcEE-EEeeCCCeEEEEecCCcceee----------------------------eecccc----------
Q 036585 17 SEEILQSMEVGIYL-VTASDDESIRLYDVTAATCLK----------------------------TINSKK---------- 57 (304)
Q Consensus 17 ~~~~i~~~~~~~~l-~~~~~d~~i~vw~~~~~~~~~----------------------------~~~~~~---------- 57 (304)
....|.+++||+|+ |+|...-.|++||+....+.. .+..|.
T Consensus 53 ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RI 132 (703)
T KOG2321|consen 53 ASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRI 132 (703)
T ss_pred ccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeec
Confidence 44568999999985 567788899999987543211 111111
Q ss_pred -cceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCccee
Q 036585 58 -YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKC 136 (304)
Q Consensus 58 -~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 136 (304)
..-..|+++.-.--|++++. ...|+-++++.|..+..+....+.+.++..++-..+|++|+.+|.|-.||.+....
T Consensus 133 P~~GRDm~y~~~scDly~~gs---g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksr 209 (703)
T KOG2321|consen 133 PKFGRDMKYHKPSCDLYLVGS---GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSR 209 (703)
T ss_pred CcCCccccccCCCccEEEeec---CcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhh
Confidence 01223444433333455554 67889999999999998887789999999999888999999999999999999887
Q ss_pred eceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCC
Q 036585 137 QGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV 216 (304)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~ 216 (304)
...+........ .| -......|+++.|+.+|-.+++|+.+|.+.+||+++.+++..-.. .
T Consensus 210 v~~l~~~~~v~s--~p----------------g~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh--~ 269 (703)
T KOG2321|consen 210 VGTLDAASSVNS--HP----------------GGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDH--G 269 (703)
T ss_pred heeeecccccCC--Cc----------------cccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeeccc--C
Confidence 777654322100 00 001224599999999999999999999999999999888766542 4
Q ss_pred CCCcceEEEEcCC--CcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc---eEEeccCCc
Q 036585 217 SRNSTLEASFSPE--GMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE---LSFWIPDLS 290 (304)
Q Consensus 217 ~~~~i~~~~~s~~--~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---~~iw~~~~~ 290 (304)
...+|..+.|.+. ++.+++. ....++|||-.+|+....+. ....++.+++-|++.+++++-.+ ..+|..++.
T Consensus 270 ~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE-pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 270 YELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIE-PTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLG 346 (703)
T ss_pred CccceeeecccccCCCceEEec-chHHhhhcccccCCceeecc-ccCCcCceeeecCCceEEEecCCCcceeEEccccC
Confidence 5678999999775 4556665 45679999999999887775 44559999999999999999888 344444443
No 210
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=4.4e-17 Score=134.60 Aligned_cols=213 Identities=16% Similarity=0.156 Sum_probs=143.9
Q ss_pred eEeecccCcEEEEeeCC---CeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee
Q 036585 20 ILQSMEVGIYLVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR 96 (304)
Q Consensus 20 ~i~~~~~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~ 96 (304)
...++|+|+.|+..+.+ ..|.+||+.+++... +....+......|+|+++.++.......+..|++||+.+++..
T Consensus 208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~- 285 (433)
T PRK04922 208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT- 285 (433)
T ss_pred cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-
Confidence 35788999999987743 469999998776533 3333444557899999998876543211447999999887643
Q ss_pred ecccccccEEEEEEcCCCCEEEEccc-CCe--EEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCC
Q 036585 97 YFKGHHDRVVLLSLCSSKDCFISGSL-DRT--VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDI 173 (304)
Q Consensus 97 ~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (304)
.+..+.......+|+|+++.++..+. +|. |+++|+.+++..... . ..
T Consensus 286 ~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-~-----------------------------~g 335 (433)
T PRK04922 286 RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT-F-----------------------------QG 335 (433)
T ss_pred ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee-c-----------------------------CC
Confidence 44545555677899999998877653 444 666676655432211 0 11
Q ss_pred CCceEEEEecCCcEEEEeeCCC---eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC---CcEEEEec
Q 036585 174 SDANVVKFSNDGRLMLLTTMEG---HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD---GSVHAWSV 247 (304)
Q Consensus 174 ~~v~~~~~~~~~~~l~~~~~dg---~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~v~d~ 247 (304)
......+|+|+|++++..+.++ .|.+||+.+++.. .+. +........|+|||++++..+.+ +.|.++++
T Consensus 336 ~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt----~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 336 NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT----PGSLDESPSFAPNGSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC----CCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 2234589999999998765443 6999999887654 332 22234457999999988776543 45888887
Q ss_pred CCCceeeeeeccCCCCceEEeCC
Q 036585 248 RSGKEVASWMSFDTEPPVIKWAP 270 (304)
Q Consensus 248 ~~~~~~~~~~~~~~~i~~~~~~~ 270 (304)
. +.....+..+.+.+...+|+|
T Consensus 411 ~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 411 D-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred C-CCceEEcccCCCCCCCCccCC
Confidence 4 455566666667788888987
No 211
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=7.8e-17 Score=133.62 Aligned_cols=258 Identities=16% Similarity=0.208 Sum_probs=173.9
Q ss_pred eeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCC---eEEEEecCCCCCceEEEEccCcee
Q 036585 18 EEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT---TVIYSSKNGWDESLRLLSLHDNKY 94 (304)
Q Consensus 18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~~~~d~~i~vwd~~~~~~ 94 (304)
...-.+++|+++++....+ .|.||...+++++..+.+|..++..+.+.|... ++++.+. +|.|++||...+..
T Consensus 19 ~~~avfSnD~k~l~~~~~~-~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl---~G~I~vwd~~~~~L 94 (792)
T KOG1963|consen 19 KSPAVFSNDAKFLFLCTGN-FVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSL---DGTIRVWDWSDGEL 94 (792)
T ss_pred ecccccccCCcEEEEeeCC-EEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEec---CccEEEecCCCcEE
Confidence 3445678899988887754 799999999999999999999999999988665 4567776 99999999999998
Q ss_pred eeecccccccEEEEEEcC----CCCEEEEcccCCe------------EEEEeCCcceeec--eEE-EeccceeEecCCCe
Q 036585 95 SRYFKGHHDRVVLLSLCS----SKDCFISGSLDRT------------VLLWDQRAEKCQG--LLR-VQGRPAAAYDDQGL 155 (304)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~------------i~iwd~~~~~~~~--~~~-~~~~~~~~~~~~~~ 155 (304)
++++..+ .++..+.+.| ....+..+..|.. ++-+.+.+..... ... ...+..+...+.+.
T Consensus 95 lkt~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge 173 (792)
T KOG1963|consen 95 LKTFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGE 173 (792)
T ss_pred EEEEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCce
Confidence 8887643 3444444422 1111112222211 1111111100000 000 01123344444443
Q ss_pred EEE-ecCCCeEEEEec-------------CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCC-CceeEEEEeCCCCCCc
Q 036585 156 VFG-YEKGPLDIFSVG-------------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR-GTLLSTYNVKPVSRNS 220 (304)
Q Consensus 156 ~~~-~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~~~ 220 (304)
+.+ .....+.+|... .|...+++.++||++++++++..||+|.+|.-.. .....+.....-|...
T Consensus 174 ~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~ 253 (792)
T KOG1963|consen 174 FKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDE 253 (792)
T ss_pred EEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccc
Confidence 321 122233333322 2555689999999999999999999999997432 1111111111147789
Q ss_pred ceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc
Q 036585 221 TLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE 281 (304)
Q Consensus 221 i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 281 (304)
|++++|+++|.+|++|+..|.+.+|.+.+++ .+-++.-.++|..+.++||+.+.+....|
T Consensus 254 V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~D 313 (792)
T KOG1963|consen 254 VNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLED 313 (792)
T ss_pred cceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecC
Confidence 9999999999999999999999999999988 45567778999999999999988888888
No 212
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.78 E-value=3.3e-17 Score=119.46 Aligned_cols=115 Identities=18% Similarity=0.417 Sum_probs=92.0
Q ss_pred CCceEEEEecCCcEEEEe--eCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecC---CCcEEEEecC
Q 036585 174 SDANVVKFSNDGRLMLLT--TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG---DGSVHAWSVR 248 (304)
Q Consensus 174 ~~v~~~~~~~~~~~l~~~--~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~v~d~~ 248 (304)
++|.+++|+|+|+.|++. ..++.|.+||++ ++.+..+. ...++.+.|||+|++|++++. .|.|.+||.+
T Consensus 60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-----~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~ 133 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-----TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR 133 (194)
T ss_pred CceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-----CCCceEEEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 469999999999987654 456799999996 55555553 456778999999999999864 4679999999
Q ss_pred CCceeeeeeccCCCCceEEeCCCCcEEEEecC------c--eEEeccCCccccccc
Q 036585 249 SGKEVASWMSFDTEPPVIKWAPGSLMFVTGSS------E--LSFWIPDLSKLGAYV 296 (304)
Q Consensus 249 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~------d--~~iw~~~~~~~~~~~ 296 (304)
+.+.+.... | ..++.++|+|||++|+++.. | ++||++.++.+.+..
T Consensus 134 ~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~ 187 (194)
T PF08662_consen 134 KKKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKKP 187 (194)
T ss_pred CCEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEecc
Confidence 888877764 3 34789999999999999874 3 899999988776543
No 213
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.78 E-value=1e-15 Score=113.23 Aligned_cols=179 Identities=18% Similarity=0.277 Sum_probs=135.0
Q ss_pred CeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEcc-Cceeeeeccccc--ccEEEEEEcCC
Q 036585 37 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH-DNKYSRYFKGHH--DRVVLLSLCSS 113 (304)
Q Consensus 37 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~-~~~~~~~~~~~~--~~v~~~~~~~~ 113 (304)
..|.|||=...+++.++... .+|.++.+. ..++++.- .+.|+||... +.+.++.+.... ..+.++.-+.+
T Consensus 75 NkviIWDD~k~~~i~el~f~-~~I~~V~l~--r~riVvvl----~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~ 147 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFN-SEIKAVKLR--RDRIVVVL----ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSN 147 (346)
T ss_pred ceEEEEecccCcEEEEEEec-cceeeEEEc--CCeEEEEe----cCeEEEEEcCCChhheeeeecccCCCceEeecCCCC
Confidence 36999996667777777643 489999995 45677776 7899999998 445555544222 23333333334
Q ss_pred CCEEEE-cccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEee
Q 036585 114 KDCFIS-GSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT 192 (304)
Q Consensus 114 ~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 192 (304)
..+|+. |-.-|.|+|-|+...+.... ..+..|.+.|.+++.+.+|..+|+++
T Consensus 148 k~~LafPg~k~GqvQi~dL~~~~~~~p---------------------------~~I~AH~s~Iacv~Ln~~Gt~vATaS 200 (346)
T KOG2111|consen 148 KSLLAFPGFKTGQVQIVDLASTKPNAP---------------------------SIINAHDSDIACVALNLQGTLVATAS 200 (346)
T ss_pred ceEEEcCCCccceEEEEEhhhcCcCCc---------------------------eEEEcccCceeEEEEcCCccEEEEec
Confidence 445555 34568999999876654211 11236889999999999999999999
Q ss_pred CCCe-EEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC
Q 036585 193 MEGH-IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG 250 (304)
Q Consensus 193 ~dg~-i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~ 250 (304)
..|+ |++||..+|+.+.++.... ....|.+++|||++.+||+++..|+++|+.++..
T Consensus 201 tkGTLIRIFdt~~g~~l~E~RRG~-d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 201 TKGTLIRIFDTEDGTLLQELRRGV-DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred cCcEEEEEEEcCCCcEeeeeecCC-chheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 9997 8999999999999988542 4578999999999999999999999999998753
No 214
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=1.9e-16 Score=130.41 Aligned_cols=212 Identities=14% Similarity=0.126 Sum_probs=140.6
Q ss_pred eEeecccCcEEEEeeCC---CeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEE--ccCcee
Q 036585 20 ILQSMEVGIYLVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS--LHDNKY 94 (304)
Q Consensus 20 ~i~~~~~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd--~~~~~~ 94 (304)
...++|+|+.|+..+.+ ..|.+||+.+++... +....+.....+|+||++.|+..... ++...||. +.+++
T Consensus 200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~--~g~~~Iy~~d~~~~~- 275 (427)
T PRK02889 200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSR--DGNSQIYTVNADGSG- 275 (427)
T ss_pred cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEcc--CCCceEEEEECCCCC-
Confidence 46789999999887643 359999998886543 33333456689999999998865432 66655554 44444
Q ss_pred eeecccccccEEEEEEcCCCCEEEEccc-CCeEEEEeC--CcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecC
Q 036585 95 SRYFKGHHDRVVLLSLCSSKDCFISGSL-DRTVLLWDQ--RAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGG 171 (304)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (304)
...+..+........|+|||+.++..+. ++...+|.+ .++.... +..
T Consensus 276 ~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~----------------------------- 325 (427)
T PRK02889 276 LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTF----------------------------- 325 (427)
T ss_pred cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-Eec-----------------------------
Confidence 4445555555677899999998876553 455566654 3332211 110
Q ss_pred CCCCceEEEEecCCcEEEEeeCCC---eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCC---cEEEE
Q 036585 172 DISDANVVKFSNDGRLMLLTTMEG---HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG---SVHAW 245 (304)
Q Consensus 172 ~~~~v~~~~~~~~~~~l~~~~~dg---~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~v~ 245 (304)
........+|+|+|++++..+.++ .|.+||+.+++... +. .........|+|||++|+.++.++ .+++.
T Consensus 326 ~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt----~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~ 400 (427)
T PRK02889 326 TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LT----DTTRDESPSFAPNGRYILYATQQGGRSVLAAV 400 (427)
T ss_pred CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-cc----CCCCccCceECCCCCEEEEEEecCCCEEEEEE
Confidence 111233578999999998877654 69999998876543 22 112335679999999988776443 36666
Q ss_pred ecCCCceeeeeeccCCCCceEEeCCC
Q 036585 246 SVRSGKEVASWMSFDTEPPVIKWAPG 271 (304)
Q Consensus 246 d~~~~~~~~~~~~~~~~i~~~~~~~~ 271 (304)
++ +++....+..+.+.+...+|+|-
T Consensus 401 ~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 401 SS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EC-CCCceEEeecCCCCCCCCccCCC
Confidence 66 56666666667788888999884
No 215
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=6.7e-18 Score=131.26 Aligned_cols=269 Identities=18% Similarity=0.281 Sum_probs=196.4
Q ss_pred eeecceee---EeecccCcEEEEeeCCCeEEEEecCCcceeeeec-ccccceeEEEEccC--CCeEEEEecCCCCCceEE
Q 036585 13 SLELSEEI---LQSMEVGIYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSH--PTTVIYSSKNGWDESLRL 86 (304)
Q Consensus 13 ~~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~~~~d~~i~v 86 (304)
.+..|.+. +.|...|..|++++.|..|.+||...++....+. +|...|....|-|. ...+++.+. ||.+++
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~---dgqvr~ 213 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSR---DGQVRV 213 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccc---cCceee
Confidence 34455544 6677889999999999999999999888776654 68888888888874 456777777 999998
Q ss_pred EEccCcee---eeecccccccEEEEEEcCCC-CEEEEcccCCeEEEEeCCcceeeceEEEec---c-----ceeEecCCC
Q 036585 87 LSLHDNKY---SRYFKGHHDRVVLLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQG---R-----PAAAYDDQG 154 (304)
Q Consensus 87 wd~~~~~~---~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~-----~~~~~~~~~ 154 (304)
=.+..... ...+..|.++|..++.-|+. ..|++++.|+.+.-+|++.......+.... . ..++.+|..
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 87654322 34566799999999999954 479999999999999999877655443211 1 122333322
Q ss_pred ---eEEEecCCCeEEEEec---------------------CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCC--C---
Q 036585 155 ---LVFGYEKGPLDIFSVG---------------------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR--G--- 205 (304)
Q Consensus 155 ---~~~~~~~~~~~~~~~~---------------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--~--- 205 (304)
+.++..+.-.++++.. .....|++++|+.++..++++..|-.|+++.-.. |
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p 373 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEP 373 (559)
T ss_pred ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCC
Confidence 2233333333333221 2345689999998888888888999999995332 2
Q ss_pred -------ceeEE-EEeCCCCCC--cceEEE-EcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcE
Q 036585 206 -------TLLST-YNVKPVSRN--STLEAS-FSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLM 274 (304)
Q Consensus 206 -------~~~~~-~~~~~~~~~--~i~~~~-~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 274 (304)
..... ++ +|.+ .|..+- |-|...|+++|+.-|.|.||+-++++.+.-+.+...-|+||.=+|--..
T Consensus 374 ~~~s~~~~~~k~vYK---GHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~Pv 450 (559)
T KOG1334|consen 374 DPSSPREQYVKRVYK---GHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPV 450 (559)
T ss_pred CCCcchhhccchhhc---ccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCch
Confidence 11122 33 3333 355554 5678899999999999999999999998888877779999999999999
Q ss_pred EEEecCc--eEEecc
Q 036585 275 FVTGSSE--LSFWIP 287 (304)
Q Consensus 275 l~s~~~d--~~iw~~ 287 (304)
||+.+-| |+||..
T Consensus 451 LAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 451 LASSGIDHDVKIWTP 465 (559)
T ss_pred hhccCCccceeeecC
Confidence 9999988 999988
No 216
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.78 E-value=6.9e-16 Score=127.72 Aligned_cols=220 Identities=14% Similarity=0.156 Sum_probs=148.1
Q ss_pred eEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEE
Q 036585 38 SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCF 117 (304)
Q Consensus 38 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 117 (304)
.|.++|.... ..+.+..+...+...+|+|++++|+.+...+....|++||+.+++... +..+...+.++.|+|+++.|
T Consensus 171 ~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l 248 (417)
T TIGR02800 171 ELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKL 248 (417)
T ss_pred eEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence 5888887543 345555566678899999999999988763223589999998876433 33355567789999999877
Q ss_pred EE-cccCC--eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCC
Q 036585 118 IS-GSLDR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTME 194 (304)
Q Consensus 118 ~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 194 (304)
+. .+.++ .|++||+.++....... +........|+|+|+.|+..+..
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~~~~l~~------------------------------~~~~~~~~~~s~dg~~l~~~s~~ 298 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQLTRLTN------------------------------GPGIDTEPSWSPDGKSIAFTSDR 298 (417)
T ss_pred EEEECCCCCccEEEEECCCCCEEECCC------------------------------CCCCCCCEEECCCCCEEEEEECC
Confidence 64 44443 58888887764332211 22233457899999988776543
Q ss_pred -C--eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCC---cEEEEecCCCceeeeeeccCCCCceEEe
Q 036585 195 -G--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG---SVHAWSVRSGKEVASWMSFDTEPPVIKW 268 (304)
Q Consensus 195 -g--~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~i~~~~~ 268 (304)
+ .|+++|+.+++.. .+. ..........|+|+|++++.++.++ .|.+||+.++.. ..+... .......|
T Consensus 299 ~g~~~iy~~d~~~~~~~-~l~---~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~ 372 (417)
T TIGR02800 299 GGSPQIYMMDADGGEVR-RLT---FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSF 372 (417)
T ss_pred CCCceEEEEECCCCCEE-Eee---cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceE
Confidence 3 6888888776643 333 2345566789999999998887665 789999887543 333222 23456789
Q ss_pred CCCCcEEEEecCc-----eEEeccCCcccccc
Q 036585 269 APGSLMFVTGSSE-----LSFWIPDLSKLGAY 295 (304)
Q Consensus 269 ~~~~~~l~s~~~d-----~~iw~~~~~~~~~~ 295 (304)
+|++++|+..+.+ +.+...+......+
T Consensus 373 spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~ 404 (417)
T TIGR02800 373 APNGRMILYATTRGGRGVLGLVSTDGRFRARL 404 (417)
T ss_pred CCCCCEEEEEEeCCCcEEEEEEECCCceeeEC
Confidence 9999988877665 44555555444444
No 217
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.77 E-value=1.1e-16 Score=116.68 Aligned_cols=158 Identities=17% Similarity=0.329 Sum_probs=112.4
Q ss_pred eEEEEccCCCeEEEEecC-------CCCCceEEEEccC-ceeeeeccc-ccccEEEEEEcCCCCEEEE--cccCCeEEEE
Q 036585 61 DLVCFTSHPTTVIYSSKN-------GWDESLRLLSLHD-NKYSRYFKG-HHDRVVLLSLCSSKDCFIS--GSLDRTVLLW 129 (304)
Q Consensus 61 ~~~~~~~~~~~l~~~~~~-------~~d~~i~vwd~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~~--~~~dg~i~iw 129 (304)
..+.|+|+|++|++-... .+-+...+|.++. +..+..+.- ..++|.+++|+|+++.|++ |..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 457899999888776541 1123455665532 233444432 3457999999999998655 4467799999
Q ss_pred eCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC---CCeEEEEEcCCCc
Q 036585 130 DQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM---EGHIHVLDSFRGT 206 (304)
Q Consensus 130 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~~ 206 (304)
|++ .+.+..+ +...++.+.|+|+|+++++++. .|.|.+||.++.+
T Consensus 89 d~~-~~~i~~~-------------------------------~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~ 136 (194)
T PF08662_consen 89 DVK-GKKIFSF-------------------------------GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK 136 (194)
T ss_pred cCc-ccEeEee-------------------------------cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE
Confidence 996 3222222 2246678999999999999864 4779999999888
Q ss_pred eeEEEEeCCCCCCcceEEEEcCCCcEEEEecC------CCcEEEEecCCCceeeee
Q 036585 207 LLSTYNVKPVSRNSTLEASFSPEGMFVISGSG------DGSVHAWSVRSGKEVASW 256 (304)
Q Consensus 207 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------dg~i~v~d~~~~~~~~~~ 256 (304)
.+.... + ..++.++|+|||++++++.. |+.++||+. +|+.+...
T Consensus 137 ~i~~~~----~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 137 KISTFE----H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred Eeeccc----c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence 877765 3 34688999999999998863 788999998 46665543
No 218
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=5.8e-18 Score=133.64 Aligned_cols=221 Identities=18% Similarity=0.229 Sum_probs=157.2
Q ss_pred eeeeecceeeE---eecccCcEEEEeeCCCeEEEEecCCcceeeeec-ccccceeEEEEccC--CCeEEEEecCCCCCce
Q 036585 11 KVSLELSEEIL---QSMEVGIYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSH--PTTVIYSSKNGWDESL 84 (304)
Q Consensus 11 ~~~~~~~~~~i---~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~~~~d~~i 84 (304)
...+++|.+.| .|..+|.+|++||.|-.+.|||.-..++++.+. +|...|.++.|-|. ...+++|+. |..|
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAg---Dk~i 119 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAG---DKLI 119 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccC---cceE
Confidence 44577888775 566789999999999999999999888887775 79999999999994 456777776 9999
Q ss_pred EEEEccC----------ceeeeecccccccEEEEEEcCCC-CEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCC
Q 036585 85 RLLSLHD----------NKYSRYFKGHHDRVVLLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQ 153 (304)
Q Consensus 85 ~vwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 153 (304)
+++|+.. .+....+..|...|..++-.|++ +.+.+++.||+|+-+|++....-..-.. ...
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~--~~~------ 191 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDED--CPS------ 191 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccc--ccH------
Confidence 9999984 23455667899999999999987 7899999999999999987432111000 000
Q ss_pred CeEEEecCCCeEEEEecCCCCCceEEEEecC-CcEEEEeeCCCeEEEEEcCCC--------c----------eeEEEEeC
Q 036585 154 GLVFGYEKGPLDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRG--------T----------LLSTYNVK 214 (304)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~--------~----------~~~~~~~~ 214 (304)
.+..+....-...++.++|. ..+|++|+.+-..++||.+.. . ++..+.
T Consensus 192 -----------~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~-- 258 (758)
T KOG1310|consen 192 -----------ILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFS-- 258 (758)
T ss_pred -----------HHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheec--
Confidence 00000011124567889985 468899999999999994321 1 111111
Q ss_pred CCCC-----------CcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeee
Q 036585 215 PVSR-----------NSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVAS 255 (304)
Q Consensus 215 ~~~~-----------~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~ 255 (304)
++|- ..++-+.|+|+|.-|+..-..-.|+++|+..++....
T Consensus 259 p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 259 PGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred CccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 0111 1256688999998777765566799999987765443
No 219
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.77 E-value=3.9e-15 Score=119.16 Aligned_cols=258 Identities=14% Similarity=0.148 Sum_probs=162.8
Q ss_pred CcEE-EEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccE
Q 036585 27 GIYL-VTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRV 105 (304)
Q Consensus 27 ~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v 105 (304)
++++ ++-..++.|.+.|..+.+.+.++......-..+.|+||++++++++. |+.|.++|+.+.+.+.+++. ....
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r---dg~vsviD~~~~~~v~~i~~-G~~~ 80 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR---DGTVSVIDLATGKVVATIKV-GGNP 80 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET---TSEEEEEETTSSSEEEEEE--SSEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC---CCeEEEEECCcccEEEEEec-CCCc
Confidence 3455 45567899999999999999999865544445789999999999987 99999999999999888874 3456
Q ss_pred EEEEEcCCCCEEEEcc-cCCeEEEEeCCcceeeceEEEeccc---------eeEecCCC--eEEEec-CCCeEEEEecC-
Q 036585 106 VLLSLCSSKDCFISGS-LDRTVLLWDQRAEKCQGLLRVQGRP---------AAAYDDQG--LVFGYE-KGPLDIFSVGG- 171 (304)
Q Consensus 106 ~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~---------~~~~~~~~--~~~~~~-~~~~~~~~~~~- 171 (304)
.++++++||++++++. ..+.+.++|.++.+.+..+...... .+..++.. .++... .+.+.+.+...
T Consensus 81 ~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~ 160 (369)
T PF02239_consen 81 RGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP 160 (369)
T ss_dssp EEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred ceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence 8899999999988775 6899999999998888776543211 12222322 222222 23333332221
Q ss_pred ---------CCCCceEEEEecCCcEEEEe-eCCCeEEEEEcCCCceeEEEEeC-------------C-------------
Q 036585 172 ---------DISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTLLSTYNVK-------------P------------- 215 (304)
Q Consensus 172 ---------~~~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~-------------~------------- 215 (304)
.........|+|++++++++ ..+..|-++|.++++....+... +
T Consensus 161 ~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~ 240 (369)
T PF02239_consen 161 KNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGY 240 (369)
T ss_dssp SCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSS
T ss_pred cccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccc
Confidence 22345668899999987765 45668888888777655443210 0
Q ss_pred --------------------------CCCCcceEEEEcCCCcEEEEe----cCCCcEEEEecCCCceeeeeecc-CCCCc
Q 036585 216 --------------------------VSRNSTLEASFSPEGMFVISG----SGDGSVHAWSVRSGKEVASWMSF-DTEPP 264 (304)
Q Consensus 216 --------------------------~~~~~i~~~~~s~~~~~l~~~----~~dg~i~v~d~~~~~~~~~~~~~-~~~i~ 264 (304)
....+ ..+.-+|+++++++. ...+.|.++|.++.+.+..+... ...+.
T Consensus 241 ~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~ 319 (369)
T PF02239_consen 241 FAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVV 319 (369)
T ss_dssp SEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EE
T ss_pred eecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEe
Confidence 00111 336778999999988 45578999999999877777432 33588
Q ss_pred eEEeCCCCcEEEEecCc----eEEeccCC
Q 036585 265 VIKWAPGSLMFVTGSSE----LSFWIPDL 289 (304)
Q Consensus 265 ~~~~~~~~~~l~s~~~d----~~iw~~~~ 289 (304)
.+.|+++|+.+..+..+ +.+||-..
T Consensus 320 h~ef~~dG~~v~vS~~~~~~~i~v~D~~T 348 (369)
T PF02239_consen 320 HMEFNPDGKEVWVSVWDGNGAIVVYDAKT 348 (369)
T ss_dssp EEEE-TTSSEEEEEEE--TTEEEEEETTT
T ss_pred ccEECCCCCEEEEEEecCCCEEEEEECCC
Confidence 99999999987776655 66666544
No 220
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=9.2e-18 Score=132.60 Aligned_cols=224 Identities=17% Similarity=0.182 Sum_probs=163.4
Q ss_pred ccceeeeecceee---EeecccCcEEEEeeCCCeEEEEecCCc----------ceeeeecccccceeEEEEccCCCeEEE
Q 036585 8 REDKVSLELSEEI---LQSMEVGIYLVTASDDESIRLYDVTAA----------TCLKTINSKKYGVDLVCFTSHPTTVIY 74 (304)
Q Consensus 8 ~~~~~~~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~ 74 (304)
-+...+++.|.+. +...+.+..+++|+-||+|+.|++... .....+.||++.|..+++++....|++
T Consensus 334 ~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Lls 413 (577)
T KOG0642|consen 334 VEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLS 413 (577)
T ss_pred eeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceee
Confidence 3556778889888 556678999999999999999965421 234567899999999999999999999
Q ss_pred EecCCCCCceEEEEccCceeeeeccccc--ccEEEEEEcCCC-CEEEEcccCCeEEEEeCCcceeeceEEEeccceeEec
Q 036585 75 SSKNGWDESLRLLSLHDNKYSRYFKGHH--DRVVLLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYD 151 (304)
Q Consensus 75 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 151 (304)
++. ||++++|+.....+ .++.... +.-.++.+-... ...++...-+.--+++++..+....+.....+..
T Consensus 414 cs~---DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~--- 486 (577)
T KOG0642|consen 414 CSS---DGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGP--- 486 (577)
T ss_pred ecC---CceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcc---
Confidence 999 99999999877665 3343222 233555554332 2223322223333334443333333322111100
Q ss_pred CCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCc
Q 036585 152 DQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM 231 (304)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 231 (304)
.....+..+.++|.+.+.+++..|+.|+++|..+++++.... .|...++++++.|+|.
T Consensus 487 -------------------~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~---a~~~svtslai~~ng~ 544 (577)
T KOG0642|consen 487 -------------------RRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMV---AHKDSVTSLAIDPNGP 544 (577)
T ss_pred -------------------cccCccceEEecCCCCeeEecccCCceecccccccccchhee---eccceecceeecCCCc
Confidence 112456778899999999999999999999999999999888 6889999999999999
Q ss_pred EEEEecCCCcEEEEecCCCceeeeeeccC
Q 036585 232 FVISGSGDGSVHAWSVRSGKEVASWMSFD 260 (304)
Q Consensus 232 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~ 260 (304)
+|++++.|+.+++|.+....++.....|.
T Consensus 545 ~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 545 YLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred eEEeecCCceeehhhccchheeecccccc
Confidence 99999999999999998877776665554
No 221
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.77 E-value=2.2e-19 Score=147.95 Aligned_cols=211 Identities=15% Similarity=0.261 Sum_probs=161.0
Q ss_pred ceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEE
Q 036585 48 TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVL 127 (304)
Q Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 127 (304)
+.+..+.+|...|+|+.|...|.++++++. |..++||..+++.+.....+|.+.|+.++.+.+..++++++.|..|+
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsd---d~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSD---DRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIR 257 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCc---cceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEE
Confidence 345567789999999999999999999999 99999999999999999999999999999999888999999999999
Q ss_pred EEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCC--
Q 036585 128 LWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG-- 205 (304)
Q Consensus 128 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-- 205 (304)
+|.+..+.++..+. +|++.|++++|+|-. +.+.||++++||.+-.
T Consensus 258 vWrl~~~~pvsvLr-----------------------------ghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~ 304 (1113)
T KOG0644|consen 258 VWRLPDGAPVSVLR-----------------------------GHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPR 304 (1113)
T ss_pred EEecCCCchHHHHh-----------------------------ccccceeeeccCccc----cCCCCCceEecccccccc
Confidence 99999998887775 788999999999954 7788999999997611
Q ss_pred ------------ceeEEEEeC-------------CCCCCcceEEEEcCCCc-----------EEEEecCCCcEEEEecCC
Q 036585 206 ------------TLLSTYNVK-------------PVSRNSTLEASFSPEGM-----------FVISGSGDGSVHAWSVRS 249 (304)
Q Consensus 206 ------------~~~~~~~~~-------------~~~~~~i~~~~~s~~~~-----------~l~~~~~dg~i~v~d~~~ 249 (304)
.....+... ........+++|....- +.+++-.+-.+.+|++.+
T Consensus 305 ~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~ 384 (1113)
T KOG0644|consen 305 IYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYT 384 (1113)
T ss_pred ccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeeccc
Confidence 011111000 00011122223332222 333333455688999999
Q ss_pred CceeeeeeccCCCCceEEeCCCC-cEEEEecCc--eEEecc-CCccccc
Q 036585 250 GKEVASWMSFDTEPPVIKWAPGS-LMFVTGSSE--LSFWIP-DLSKLGA 294 (304)
Q Consensus 250 ~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~d--~~iw~~-~~~~~~~ 294 (304)
|.+...+.+|...+..+.++|-+ +...+++.| ..||++ +...++.
T Consensus 385 g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~ 433 (1113)
T KOG0644|consen 385 GQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKH 433 (1113)
T ss_pred chhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCccee
Confidence 99999999999999999999955 555677888 788876 3434433
No 222
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.77 E-value=5.4e-16 Score=128.31 Aligned_cols=214 Identities=10% Similarity=0.016 Sum_probs=144.5
Q ss_pred eeEeecccCcEEEEeeC---CCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceee
Q 036585 19 EILQSMEVGIYLVTASD---DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYS 95 (304)
Q Consensus 19 ~~i~~~~~~~~l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~ 95 (304)
....++|||+.|+..+. +..|.+||+.+++.. .+..+.+.+...+|+|+|+.|+..........|++||+.+++.
T Consensus 205 ~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~- 282 (435)
T PRK05137 205 LTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT- 282 (435)
T ss_pred EeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-
Confidence 34678999999888764 467999999887653 4445556777899999999887654421134588889887765
Q ss_pred eecccccccEEEEEEcCCCCEEEEccc-CC--eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCC
Q 036585 96 RYFKGHHDRVVLLSLCSSKDCFISGSL-DR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGD 172 (304)
Q Consensus 96 ~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (304)
..+..+........|+|||+.++..+. +| .|+++|+..+....... .
T Consensus 283 ~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~------------------------------~ 332 (435)
T PRK05137 283 TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISF------------------------------G 332 (435)
T ss_pred EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeec------------------------------C
Confidence 445556666778999999998877653 33 67888876554332211 1
Q ss_pred CCCceEEEEecCCcEEEEeeCC---CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC------CcEE
Q 036585 173 ISDANVVKFSNDGRLMLLTTME---GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD------GSVH 243 (304)
Q Consensus 173 ~~~v~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------g~i~ 243 (304)
...+....|+|+|+.++....+ ..|.+||+..+.. ..+. ....+....|+|||+.|+..+.+ ..++
T Consensus 333 ~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt----~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~ 407 (435)
T PRK05137 333 GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT----SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLY 407 (435)
T ss_pred CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc----CCCCCCCCeECCCCCEEEEEEccCCCCCcceEE
Confidence 2334567899999999886643 3688899765543 3333 22346678999999988765432 3588
Q ss_pred EEecCCCceeeeeeccCCCCceEEeCCC
Q 036585 244 AWSVRSGKEVASWMSFDTEPPVIKWAPG 271 (304)
Q Consensus 244 v~d~~~~~~~~~~~~~~~~i~~~~~~~~ 271 (304)
++|+..+.. ..+. ..+.+...+|+|-
T Consensus 408 ~~dl~g~~~-~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 408 TVDLTGRNE-REVP-TPGDASDPAWSPL 433 (435)
T ss_pred EEECCCCce-EEcc-CCCCccCcccCCC
Confidence 888865544 4444 3445677788873
No 223
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=7.4e-17 Score=122.61 Aligned_cols=216 Identities=14% Similarity=0.123 Sum_probs=162.5
Q ss_pred eeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccC------ceeeeecc-cccccEEEEEEcCCCCEEEEcccC
Q 036585 51 KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD------NKYSRYFK-GHHDRVVLLSLCSSKDCFISGSLD 123 (304)
Q Consensus 51 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d 123 (304)
+.+.+|.+.|+++.|+.++.+|++|+. |..+++|.+.. .+++.... .|...|.|++|......+++|..+
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGD---D~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGD---DMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCC---cceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 346689999999999999999999998 99999999864 35555544 355899999999988999999999
Q ss_pred CeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcC
Q 036585 124 RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF 203 (304)
Q Consensus 124 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~ 203 (304)
++|...|+++.+.+..+... ...+.|..+..+|..+.|++.+.++.|.+||.+
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~---------------------------~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~R 179 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANEN---------------------------NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNR 179 (609)
T ss_pred ceeEeeecccceeeeeeccc---------------------------CcccceeecccCCCCceEEEEecCceEEEEecc
Confidence 99999999998876655422 344688999999999999999999999999998
Q ss_pred CCc-eeEEEEeCCCCCCcceEEEEcCCC-cEEEEecCCCcEEEEecCCCce-eeee------eccCCCCceEEeCCCCcE
Q 036585 204 RGT-LLSTYNVKPVSRNSTLEASFSPEG-MFVISGSGDGSVHAWSVRSGKE-VASW------MSFDTEPPVIKWAPGSLM 274 (304)
Q Consensus 204 ~~~-~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~v~d~~~~~~-~~~~------~~~~~~i~~~~~~~~~~~ 274 (304)
..+ ....+- ..........+.|+|.. .+|++.+..+-+-+||.+.... +... +.....-.++.|+|.|..
T Consensus 180 d~~~~~~~~~-~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q 258 (609)
T KOG4227|consen 180 DRQNPISLVL-PANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQ 258 (609)
T ss_pred CCCCCCceee-ecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCe
Confidence 765 333222 22345667788999954 5778888888999999976432 2221 111222356789999998
Q ss_pred EEEecCc--eEEeccCCcccccccc
Q 036585 275 FVTGSSE--LSFWIPDLSKLGAYVG 297 (304)
Q Consensus 275 l~s~~~d--~~iw~~~~~~~~~~~~ 297 (304)
|.+--.. -.+|++-.+++-.+..
T Consensus 259 ~msiRR~~~P~~~D~~S~R~~V~k~ 283 (609)
T KOG4227|consen 259 FMSIRRGKCPLYFDFISQRCFVLKS 283 (609)
T ss_pred ehhhhccCCCEEeeeecccceeEec
Confidence 8877655 4566666655544443
No 224
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.76 E-value=1.2e-18 Score=134.59 Aligned_cols=198 Identities=14% Similarity=0.198 Sum_probs=169.7
Q ss_pred ecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCC
Q 036585 53 INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQR 132 (304)
Q Consensus 53 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 132 (304)
+....-+.+.+.++.+|.+++.++. .|.|..+|..+++....+. -...|..+.|..+.++++++- ...++|||-.
T Consensus 125 L~l~eFGPY~~~ytrnGrhlllgGr---KGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~ 199 (545)
T KOG1272|consen 125 LSLPEFGPYHLDYTRNGRHLLLGGR---KGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNN 199 (545)
T ss_pred ccccccCCeeeeecCCccEEEecCC---ccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhh-hceEEEecCC
Confidence 3334456788999999999999999 9999999999999887776 556789999998887777764 5789999954
Q ss_pred cceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEE
Q 036585 133 AEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN 212 (304)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 212 (304)
+..+..++ ....|..+.|-|..-+|++++..|.++.-|+.+|+.+..+.
T Consensus 200 -GtElHClk------------------------------~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~ 248 (545)
T KOG1272|consen 200 -GTELHCLK------------------------------RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR 248 (545)
T ss_pred -CcEEeehh------------------------------hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHH
Confidence 44333333 22567889999999999999999999999999999999888
Q ss_pred eCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCC
Q 036585 213 VKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDL 289 (304)
Q Consensus 213 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~ 289 (304)
...+.+..++-+|-+..+-+|..+|+|.+|.....+++..+..|.++|.+|++.++|+|++|++.| ++|||+..
T Consensus 249 ---t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~ 324 (545)
T KOG1272|consen 249 ---TGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRN 324 (545)
T ss_pred ---ccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecc
Confidence 466788889999999999999999999999999999999999999999999999999999999999 99999853
No 225
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=9.7e-17 Score=120.57 Aligned_cols=206 Identities=13% Similarity=0.238 Sum_probs=147.9
Q ss_pred cceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc-cccccEEEEEEcCCC-CEEEEcccCCeEEEEeCCcce
Q 036585 58 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK-GHHDRVVLLSLCSSK-DCFISGSLDRTVLLWDQRAEK 135 (304)
Q Consensus 58 ~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~ 135 (304)
..+..++|+++-..++++.. |..|++||-.. +....++ ..+..|+|++|.|.+ +.|+.|.. +-|.+|......
T Consensus 99 ~dlr~~aWhqH~~~fava~n---ddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tl 173 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATN---DDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTL 173 (445)
T ss_pred cceeeEeechhhhhhhhhcc---CcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccc
Confidence 35788999998888888887 99999999877 4444444 345689999999954 46777776 558999865432
Q ss_pred eece-EEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC-CCeEEEEEcCCCceeEEEEe
Q 036585 136 CQGL-LRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFRGTLLSTYNV 213 (304)
Q Consensus 136 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~ 213 (304)
.... +. ........+..-.+| .+|++++|.+||..+++++. +..|.+||..++..+....
T Consensus 174 n~~r~~~----------------~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~- 235 (445)
T KOG2139|consen 174 NANRNIR----------------MMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP- 235 (445)
T ss_pred ccccccc----------------cccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc-
Confidence 2111 11 011122223333344 68999999999999998875 6789999999988766553
Q ss_pred CCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc-eEEeccC
Q 036585 214 KPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE-LSFWIPD 288 (304)
Q Consensus 214 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~~ 288 (304)
...+.+.-+.||||+.+|+++.-|+..++|+..............+.|...+|+|+|++|..+... -++|.+.
T Consensus 236 --~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~ 309 (445)
T KOG2139|consen 236 --KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLT 309 (445)
T ss_pred --cCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEe
Confidence 356778889999999999999999999999655433333444455689999999999877655544 6666553
No 226
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.75 E-value=7.9e-16 Score=132.12 Aligned_cols=239 Identities=15% Similarity=0.205 Sum_probs=168.0
Q ss_pred ecccCcEEEEeeCCCeEEEEecCCc-------ceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCc--e
Q 036585 23 SMEVGIYLVTASDDESIRLYDVTAA-------TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN--K 93 (304)
Q Consensus 23 ~~~~~~~l~~~~~d~~i~vw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~--~ 93 (304)
..+.+.++++||.||+|++|+.... +...++......+.++.+.+.+..+++++. ||.|++.++.-. +
T Consensus 1057 s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~---DG~v~~~~id~~~~~ 1133 (1431)
T KOG1240|consen 1057 SSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK---DGSVRVLRIDHYNVS 1133 (1431)
T ss_pred cCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC---CCeEEEEEccccccc
Confidence 3455699999999999999998632 223334434568999999999999999988 999999998752 1
Q ss_pred -----eeeeccccc-ccE-EEEEEcC-CC-CEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCe
Q 036585 94 -----YSRYFKGHH-DRV-VLLSLCS-SK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPL 164 (304)
Q Consensus 94 -----~~~~~~~~~-~~v-~~~~~~~-~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (304)
..+....+. +.+ ..-+|.. .+ ..++.+...+.|..||++.....+.++.+
T Consensus 1134 ~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~--------------------- 1192 (1431)
T KOG1240|consen 1134 KRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ--------------------- 1192 (1431)
T ss_pred cceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC---------------------
Confidence 112222222 223 3333432 23 37888888899999999988776665533
Q ss_pred EEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCC---CcEEEEe-c-CC
Q 036585 165 DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE---GMFVISG-S-GD 239 (304)
Q Consensus 165 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~---~~~l~~~-~-~d 239 (304)
...+.|++++.+|.+.++++|+..|.+.+||++-+.++..+.. .+..++..+..+|- ....+++ + ..
T Consensus 1193 ------~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~--P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ 1264 (1431)
T KOG1240|consen 1193 ------LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEH--PARAPIRHVWLCPTYPQESVSVSAGSSSN 1264 (1431)
T ss_pred ------ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccC--cccCCcceEEeeccCCCCceEEEecccCC
Confidence 2347899999999999999999999999999999988888875 34577888877773 2444444 4 57
Q ss_pred CcEEEEecCCCceeeeeecc-------------------CCCCceEEeCCCCcEEEEecCc--eEEeccCCcccc
Q 036585 240 GSVHAWSVRSGKEVASWMSF-------------------DTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKLG 293 (304)
Q Consensus 240 g~i~v~d~~~~~~~~~~~~~-------------------~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~~ 293 (304)
+.|.+|++.+|.+...+-.. .-+.....+..-+..+.+|+.| |+.||......-
T Consensus 1265 nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1265 NEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred CceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 88999999988665444211 1111222333345677888888 899988665544
No 227
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.75 E-value=2.9e-17 Score=118.28 Aligned_cols=147 Identities=16% Similarity=0.229 Sum_probs=115.8
Q ss_pred eEEEEecCCCCCceEEEEccCce----------eeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceE
Q 036585 71 TVIYSSKNGWDESLRLLSLHDNK----------YSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140 (304)
Q Consensus 71 ~l~~~~~~~~d~~i~vwd~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 140 (304)
.++.++.. +|.+.+||+.++. .......|.++|.++.|.+.-..=++|+.+..+..|++........+
T Consensus 166 ~lllaGyE--sghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~ 243 (323)
T KOG0322|consen 166 FLLLAGYE--SGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI 243 (323)
T ss_pred EEEEEecc--CCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc
Confidence 34444443 9999999999873 33344579999999999876666678888888999988654221111
Q ss_pred EEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCc
Q 036585 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS 220 (304)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~ 220 (304)
... +.-....+..+.+-||++.+++++.|++|++|..++.+++..+. .|...
T Consensus 244 ~~e-------------------------~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk---yHsag 295 (323)
T KOG0322|consen 244 RKE-------------------------ITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK---YHSAG 295 (323)
T ss_pred cce-------------------------EEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh---hhhcc
Confidence 100 00122467789999999999999999999999999999999998 68899
Q ss_pred ceEEEEcCCCcEEEEecCCCcEEEEec
Q 036585 221 TLEASFSPEGMFVISGSGDGSVHAWSV 247 (304)
Q Consensus 221 i~~~~~s~~~~~l~~~~~dg~i~v~d~ 247 (304)
|++++|+|+...+|+++.|+.|.+|++
T Consensus 296 vn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 296 VNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999986
No 228
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=5e-15 Score=122.77 Aligned_cols=220 Identities=12% Similarity=0.069 Sum_probs=143.1
Q ss_pred eEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEE
Q 036585 38 SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCF 117 (304)
Q Consensus 38 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 117 (304)
.|.++|.+.++ .+.+..+...+....|+|+++.|+..+.......|.+||+.+++... +....+.+....|+|+|+.|
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence 47777876544 44555566788999999999999887753223579999998876433 33233445678999999977
Q ss_pred EE-cccCC--eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC-
Q 036585 118 IS-GSLDR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM- 193 (304)
Q Consensus 118 ~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 193 (304)
+. .+.++ .|++||+.++...... .+........|+|||+.++..+.
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~~lt------------------------------~~~~~~~~~~~spDg~~i~f~s~~ 307 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLSRVT------------------------------NHPAIDTEPFWGKDGRTLYFTSDR 307 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeEEcc------------------------------cCCCCcCCeEECCCCCEEEEEECC
Confidence 64 44444 6888898876543221 12223456789999998876654
Q ss_pred CC--eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC-C--cEEEEecCCCceeeeeeccCCCCceEEe
Q 036585 194 EG--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-G--SVHAWSVRSGKEVASWMSFDTEPPVIKW 268 (304)
Q Consensus 194 dg--~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~v~d~~~~~~~~~~~~~~~~i~~~~~ 268 (304)
+| .|+++|+.+++...... .........|+|||++|+..+.+ + .|.++|+.+++. ..+. .........|
T Consensus 308 ~g~~~iy~~d~~~g~~~~lt~----~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt-~~~~~~~p~~ 381 (430)
T PRK00178 308 GGKPQIYKVNVNGGRAERVTF----VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILT-DTSLDESPSV 381 (430)
T ss_pred CCCceEEEEECCCCCEEEeec----CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEcc-CCCCCCCceE
Confidence 33 68888887776433221 12233457899999998876543 3 588999988764 3332 2223345689
Q ss_pred CCCCcEEEEecCc-----eEEeccCCcccccc
Q 036585 269 APGSLMFVTGSSE-----LSFWIPDLSKLGAY 295 (304)
Q Consensus 269 ~~~~~~l~s~~~d-----~~iw~~~~~~~~~~ 295 (304)
+|||++++..+.+ +.+++.+.+....+
T Consensus 382 spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l 413 (430)
T PRK00178 382 APNGTMLIYATRQQGRGVLMLVSINGRVRLPL 413 (430)
T ss_pred CCCCCEEEEEEecCCceEEEEEECCCCceEEC
Confidence 9999988877654 44445554444333
No 229
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.75 E-value=3.6e-14 Score=111.14 Aligned_cols=249 Identities=13% Similarity=0.086 Sum_probs=169.8
Q ss_pred CeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEec---------CCCCCceEEEEccCceeeeeccccc-----
Q 036585 37 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK---------NGWDESLRLLSLHDNKYSRYFKGHH----- 102 (304)
Q Consensus 37 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------~~~d~~i~vwd~~~~~~~~~~~~~~----- 102 (304)
++|.+.|..+++.+.++.....+- .+ ++||++.++++.. . +..|.+||..+.+.+..+.-..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~--~d~V~v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKR--TDYVEVIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCC--CCEEEEEECccCcEEeEEccCCCchhh
Confidence 789999999999998887654333 34 9999999988876 4 8899999999999887776321
Q ss_pred --ccEEEEEEcCCCCEEEEcc-c-CCeEEEEeCCcceeeceEEEeccc-eeEecCCCeEEEecCCCeEEEEecCC-----
Q 036585 103 --DRVVLLSLCSSKDCFISGS-L-DRTVLLWDQRAEKCQGLLRVQGRP-AAAYDDQGLVFGYEKGPLDIFSVGGD----- 172 (304)
Q Consensus 103 --~~v~~~~~~~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----- 172 (304)
.....++++|||++++... . +..|.+.|+.+++.+..+..+... ....++........++......+...
T Consensus 103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~ 182 (352)
T TIGR02658 103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKI 182 (352)
T ss_pred ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEE
Confidence 1234789999999888765 3 789999999999999888765533 23333333333333333333222110
Q ss_pred ---------CCCc-eEEEEec-CCcEEEEeeCCCeEEEEEcCCC-----ceeEEEEeCC----CCCCcceEEEEcCCCcE
Q 036585 173 ---------ISDA-NVVKFSN-DGRLMLLTTMEGHIHVLDSFRG-----TLLSTYNVKP----VSRNSTLEASFSPEGMF 232 (304)
Q Consensus 173 ---------~~~v-~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~-----~~~~~~~~~~----~~~~~i~~~~~s~~~~~ 232 (304)
..++ ..-.|.+ +|+++.+... |.|.+.|+... +....+.... -..+...-++++|+++.
T Consensus 183 ~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ 261 (352)
T TIGR02658 183 KPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDR 261 (352)
T ss_pred eeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCE
Confidence 0000 0013455 8888777776 99999996443 2222222110 12233344999999998
Q ss_pred EEEec----------CCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCc-EEEEecCc---eEEeccCCcc
Q 036585 233 VISGS----------GDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSL-MFVTGSSE---LSFWIPDLSK 291 (304)
Q Consensus 233 l~~~~----------~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~d---~~iw~~~~~~ 291 (304)
++... ..+.|.++|.++++.+..+.. ...+..++++||++ +|++.... +.+.|....+
T Consensus 262 lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 262 IYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred EEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 88743 225799999999999888863 45789999999999 77766532 8898886553
No 230
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=8.9e-16 Score=116.43 Aligned_cols=236 Identities=11% Similarity=0.151 Sum_probs=166.7
Q ss_pred cEEEEeeCCCeEEEEecCCcceeeee------cccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCce----eeee
Q 036585 28 IYLVTASDDESIRLYDVTAATCLKTI------NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK----YSRY 97 (304)
Q Consensus 28 ~~l~~~~~d~~i~vw~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~----~~~~ 97 (304)
+.+...+.|..+..+..........+ .....+|..++.. ...|+++-. +|.+.+|....+. ....
T Consensus 70 evl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~---sG~l~~~~~k~~d~hss~l~~ 144 (412)
T KOG3881|consen 70 EVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVS---SGNLQVRHDKSGDLHSSKLIK 144 (412)
T ss_pred eEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEec---CCcEEEEeccCCcccccccee
Confidence 34444445555666665554443332 2334455555543 335666665 9999999988442 2333
Q ss_pred cccccccEEEEEEcCCCC-EEEEcccC--CeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCC
Q 036585 98 FKGHHDRVVLLSLCSSKD-CFISGSLD--RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDIS 174 (304)
Q Consensus 98 ~~~~~~~v~~~~~~~~~~-~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (304)
+..+ .++..+.-++... .+++|+.. ..+++||++..+.+..-+ ..+.-. -+-.+.+
T Consensus 145 la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aK--NvpnD~----------L~LrVPv-------- 203 (412)
T KOG3881|consen 145 LATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAK--NVPNDR----------LGLRVPV-------- 203 (412)
T ss_pred eecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeecc--CCCCcc----------ccceeee--------
Confidence 3323 4566677776444 56668888 889999999875443322 111000 0001112
Q ss_pred CceEEEEecC--CcEEEEeeCCCeEEEEEcCCC-ceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCc
Q 036585 175 DANVVKFSND--GRLMLLTTMEGHIHVLDSFRG-TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGK 251 (304)
Q Consensus 175 ~v~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~ 251 (304)
-++.+.|-+. ...|++++.-+.+++||.+.+ +++..+. ....+++++...|.++++++|..-+.+..||++.++
T Consensus 204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd---~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k 280 (412)
T KOG3881|consen 204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFD---FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK 280 (412)
T ss_pred eeccceecCCCCCceEEEEecceeEEEecCcccCcceeEec---cccCcceeeeecCCCcEEEEecccchhheecccCce
Confidence 2466888777 788999999999999999865 4555666 568899999999999999999999999999999999
Q ss_pred eeee-eeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCccc
Q 036585 252 EVAS-WMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKL 292 (304)
Q Consensus 252 ~~~~-~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~ 292 (304)
.+.. +.+..+.|++|..+|..+++++++-| +||++.+.+++
T Consensus 281 l~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 281 LLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred eeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence 8777 78999999999999999999999999 99999988654
No 231
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=8.7e-16 Score=116.48 Aligned_cols=208 Identities=14% Similarity=0.112 Sum_probs=159.8
Q ss_pred CcEEEEeeCCCeEEEEecCCcc----eeeeecccccceeEEEEccCCCeEEE-EecCCCC--CceEEEEccCceeeeecc
Q 036585 27 GIYLVTASDDESIRLYDVTAAT----CLKTINSKKYGVDLVCFTSHPTTVIY-SSKNGWD--ESLRLLSLHDNKYSRYFK 99 (304)
Q Consensus 27 ~~~l~~~~~d~~i~vw~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~~~~d--~~i~vwd~~~~~~~~~~~ 99 (304)
...|++|-.+|.+.+|..+.+. .+..+..+ .++..|.-++..+.+++ |+. . ..+.+||+++.+++..-+
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGk---e~~n~lkiwdle~~~qiw~aK 190 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGK---ENINELKIWDLEQSKQIWSAK 190 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCch---hcccceeeeecccceeeeecc
Confidence 5578888889999999988432 33444444 36777877777666666 555 6 789999999886655433
Q ss_pred cc---------cccEEEEEEcCC--CCEEEEcccCCeEEEEeCCccee-eceEEEeccceeEecCCCeEEEecCCCeEEE
Q 036585 100 GH---------HDRVVLLSLCSS--KDCFISGSLDRTVLLWDQRAEKC-QGLLRVQGRPAAAYDDQGLVFGYEKGPLDIF 167 (304)
Q Consensus 100 ~~---------~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (304)
.. .-.++.+.|.+. ...|++++.-+.+++||.+.++. +..+.
T Consensus 191 NvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd-------------------------- 244 (412)
T KOG3881|consen 191 NVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFD-------------------------- 244 (412)
T ss_pred CCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEec--------------------------
Confidence 21 124578889887 77999999999999999986542 22222
Q ss_pred EecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEE-EEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEe
Q 036585 168 SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLST-YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWS 246 (304)
Q Consensus 168 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d 246 (304)
-.+.+++++...|+++++++|..-|.+..||++.++.... +. +..+.+.++..+|.++++++++-|..|||+|
T Consensus 245 ---~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~k---g~tGsirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 245 ---FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLK---GITGSIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred ---cccCcceeeeecCCCcEEEEecccchhheecccCceeeccccC---CccCCcceEEEcCCCceEEeeccceeEEEee
Confidence 2346789999999999999999999999999999988876 55 6788999999999999999999999999999
Q ss_pred cCCCceeeeeeccCCCCceEEeCCC
Q 036585 247 VRSGKEVASWMSFDTEPPVIKWAPG 271 (304)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~~~~~~~~ 271 (304)
+++.+++.... -...+++|.+.++
T Consensus 319 ~ktrkll~kvY-vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 319 IKTRKLLHKVY-VKSRLTFILLRDD 342 (412)
T ss_pred cccchhhhhhh-hhccccEEEecCC
Confidence 99977655442 3455677777654
No 232
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.73 E-value=1.9e-16 Score=124.77 Aligned_cols=170 Identities=12% Similarity=0.139 Sum_probs=125.7
Q ss_pred ccCcEEEEeeCCCeEEEEecCCcceeeeec----ccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCc--------
Q 036585 25 EVGIYLVTASDDESIRLYDVTAATCLKTIN----SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN-------- 92 (304)
Q Consensus 25 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~-------- 92 (304)
+.+--++.|-.-|.+.+.|....+..+.+. ..+..|+|+.|-|.++.++..+.. +|.+++||.+-.
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~--sGnlyly~~~~~~~~t~p~~ 260 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHA--SGNLYLYDKEIVCGATAPSY 260 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEe--cCceEEeeccccccCCCCcc
Confidence 335556667777788888865422211111 123689999999977665555442 999999976421
Q ss_pred ------e--------------eeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecC
Q 036585 93 ------K--------------YSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDD 152 (304)
Q Consensus 93 ------~--------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 152 (304)
. ++..+.--.+.|...+|+|||++||+.+.||.+||+|..+.+....++.
T Consensus 261 ~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS---------- 330 (636)
T KOG2394|consen 261 QALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKS---------- 330 (636)
T ss_pred cccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHh----------
Confidence 0 0111112245788899999999999999999999999998776655431
Q ss_pred CCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcC
Q 036585 153 QGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP 228 (304)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~ 228 (304)
--+...|++|||||+++++|++|--|.||.+...+.+..-+ +|+..|..++|+|
T Consensus 331 -------------------YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq---GHkSWVs~VaFDp 384 (636)
T KOG2394|consen 331 -------------------YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ---GHKSWVSVVAFDP 384 (636)
T ss_pred -------------------hccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc---ccccceeeEeecc
Confidence 12567899999999999999999999999999998888877 8999999999983
No 233
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.72 E-value=1.4e-13 Score=110.35 Aligned_cols=245 Identities=16% Similarity=0.229 Sum_probs=161.7
Q ss_pred ceeeEeecccCcEEEEeeC----CCeEEEEecCCc--c--eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEE
Q 036585 17 SEEILQSMEVGIYLVTASD----DESIRLYDVTAA--T--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 88 (304)
Q Consensus 17 ~~~~i~~~~~~~~l~~~~~----d~~i~vw~~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd 88 (304)
.+..+.+++++++|.+... ++.|..|++... + .+.+..........++++|++++|+++... +|.|.+++
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~--~g~v~v~~ 115 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYG--GGSVSVFP 115 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETT--TTEEEEEE
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEcc--CCeEEEEE
Confidence 4556888899999998876 568999988754 2 333333234456789999999999999875 99999999
Q ss_pred ccC-ceeeee---cc----------cccccEEEEEEcCCCCEEEEccc-CCeEEEEeCCccee--eceEEEeccceeEec
Q 036585 89 LHD-NKYSRY---FK----------GHHDRVVLLSLCSSKDCFISGSL-DRTVLLWDQRAEKC--QGLLRVQGRPAAAYD 151 (304)
Q Consensus 89 ~~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~ 151 (304)
+.. +..... +. .......++.++|+++++++... ...|.+|++..... .......
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~-------- 187 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIK-------- 187 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEE--------
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccc--------
Confidence 986 332221 11 12245688999999998877542 34799999876542 1111100
Q ss_pred CCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEee-CCCeEEEEEcC--CCcee--EEEEeCC---CCCCcceE
Q 036585 152 DQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSF--RGTLL--STYNVKP---VSRNSTLE 223 (304)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~--~~~~~--~~~~~~~---~~~~~i~~ 223 (304)
-......+.+.|+|+++++++.. .++.|.+|++. +++.. ......+ ........
T Consensus 188 ------------------~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 249 (345)
T PF10282_consen 188 ------------------VPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAE 249 (345)
T ss_dssp ------------------CSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEE
T ss_pred ------------------cccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCcee
Confidence 01334568899999999887665 57889999988 44332 2222110 11225678
Q ss_pred EEEcCCCcEEEEec-CCCcEEEEecC--CCce--eeeeeccCCCCceEEeCCCCcEEEEecCc---eEEeccCC
Q 036585 224 ASFSPEGMFVISGS-GDGSVHAWSVR--SGKE--VASWMSFDTEPPVIKWAPGSLMFVTGSSE---LSFWIPDL 289 (304)
Q Consensus 224 ~~~s~~~~~l~~~~-~dg~i~v~d~~--~~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---~~iw~~~~ 289 (304)
++++|||++|+++. ..+.|.+|++. ++++ +..+.......+.++++|+|++|+++..+ +.+|.++.
T Consensus 250 i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 250 IAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred EEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 99999999988875 45689999993 3333 34444444557999999999999988766 88887753
No 234
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=1.5e-15 Score=128.73 Aligned_cols=232 Identities=13% Similarity=0.226 Sum_probs=164.9
Q ss_pred ceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccc---cccEEEEEEcC--CCCEEEEcccCCeEEEEeCCc
Q 036585 59 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGH---HDRVVLLSLCS--SKDCFISGSLDRTVLLWDQRA 133 (304)
Q Consensus 59 ~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~---~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~ 133 (304)
+...+.|+|-...++++.. ...|+|||.+.++....|..+ ...|+.+.+-. |..++++++.||.|+||+--.
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~---r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADD---RERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CCceeeecCCCceeEEcCC---cceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 4667889999999999987 789999999999887777643 34788888875 556899999999999997432
Q ss_pred ce-----eeceEE-Ee--------ccceeEecC-CCeEE-EecCCCeEEEEecC----------CCCCceEEEEec-CCc
Q 036585 134 EK-----CQGLLR-VQ--------GRPAAAYDD-QGLVF-GYEKGPLDIFSVGG----------DISDANVVKFSN-DGR 186 (304)
Q Consensus 134 ~~-----~~~~~~-~~--------~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~----------~~~~v~~~~~~~-~~~ 186 (304)
.. .+.... .. ....+.|.. .|.++ ..+...+++|+... ....++++.-+. .|+
T Consensus 1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred cccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCc
Confidence 21 111110 00 011233332 23333 44466788887653 234556555433 468
Q ss_pred EEEEeeCCCeEEEEEcCCCce---eEEEEeCCCCCCc--ceEEEEcCCCc-EEEEecCCCcEEEEecCCCce--eeeeec
Q 036585 187 LMLLTTMEGHIHVLDSFRGTL---LSTYNVKPVSRNS--TLEASFSPEGM-FVISGSGDGSVHAWSVRSGKE--VASWMS 258 (304)
Q Consensus 187 ~l~~~~~dg~i~~~d~~~~~~---~~~~~~~~~~~~~--i~~~~~s~~~~-~l~~~~~dg~i~v~d~~~~~~--~~~~~~ 258 (304)
.+++|..||.|++||.+.... +.... .|... |..+.+.+.|- .|++|+.||.|++||++.... ...+..
T Consensus 1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R---~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~ 1299 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYR---EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA 1299 (1387)
T ss_pred eEEEeecCCceEEeecccCCccccceeec---ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee
Confidence 999999999999999886544 33333 45554 99999998665 499999999999999987422 222233
Q ss_pred cC--C-CCceEEeCCCCcEEEEecCc-eEEeccCCccccccc
Q 036585 259 FD--T-EPPVIKWAPGSLMFVTGSSE-LSFWIPDLSKLGAYV 296 (304)
Q Consensus 259 ~~--~-~i~~~~~~~~~~~l~s~~~d-~~iw~~~~~~~~~~~ 296 (304)
|- + ..+++..+++...+|+|+.. ++||+...+++..++
T Consensus 1300 ~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k 1341 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIK 1341 (1387)
T ss_pred ccccCccceeeeeccCCCeeeecCcceEEEEecChhhhcccc
Confidence 32 3 58999999999999999977 999999998887665
No 235
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=6.2e-15 Score=116.92 Aligned_cols=263 Identities=14% Similarity=0.267 Sum_probs=166.6
Q ss_pred eeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEec-------CCCCCceEEEEccC
Q 036585 19 EILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK-------NGWDESLRLLSLHD 91 (304)
Q Consensus 19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------~~~d~~i~vwd~~~ 91 (304)
.....+++|+++|.+. +..++|++..++..+.+...- .+.++.|+|.+.+|.+--. ....-.+++|++++
T Consensus 38 ~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet 114 (566)
T KOG2315|consen 38 NVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVET 114 (566)
T ss_pred eeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeeeecc
Confidence 3556677787777765 567999999888644433332 6899999999998876421 01134577999998
Q ss_pred ceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeec-eEEEe---------------------------
Q 036585 92 NKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG-LLRVQ--------------------------- 143 (304)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~--------------------------- 143 (304)
+.....++.....-++..|++|..+.+- -..+.+.+|++...+... .+...
T Consensus 115 ~~~~s~~q~k~Q~~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaP 193 (566)
T KOG2315|consen 115 GVQRSQIQKKMQNGWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAP 193 (566)
T ss_pred ceehhheehhhhcCcccccccchhhhhh-hhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCC
Confidence 6554444332222256666665542221 122345555544321110 11100
Q ss_pred -------------------------ccceeEecCCC--eEE------------EecCCCeEEEEecC--------CCCCc
Q 036585 144 -------------------------GRPAAAYDDQG--LVF------------GYEKGPLDIFSVGG--------DISDA 176 (304)
Q Consensus 144 -------------------------~~~~~~~~~~~--~~~------------~~~~~~~~~~~~~~--------~~~~v 176 (304)
....+.|+..+ +++ -+....+.+..+++ ..++|
T Consensus 194 a~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPV 273 (566)
T KOG2315|consen 194 ASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPV 273 (566)
T ss_pred cEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCc
Confidence 11112222222 111 12223444444443 36899
Q ss_pred eEEEEecCCcEEEE--eeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecC---CCcEEEEecCCCc
Q 036585 177 NVVKFSNDGRLMLL--TTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG---DGSVHAWSVRSGK 251 (304)
Q Consensus 177 ~~~~~~~~~~~l~~--~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~v~d~~~~~ 251 (304)
.++.|+|+++.|++ |-+-..+.+||++ +.++..+ ..++-+++-|+|.|++|+.++- -|.|-|||..+.+
T Consensus 274 hdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df-----~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K 347 (566)
T KOG2315|consen 274 HDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF-----PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK 347 (566)
T ss_pred eEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC-----CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchh
Confidence 99999999988776 4567789999975 4555554 3567778999999999988764 4789999999988
Q ss_pred eeeeeeccCCCCceEEeCCCCcEEEEecCc--------eEEeccCCcccc
Q 036585 252 EVASWMSFDTEPPVIKWAPGSLMFVTGSSE--------LSFWIPDLSKLG 293 (304)
Q Consensus 252 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--------~~iw~~~~~~~~ 293 (304)
++..+.... -+-+.|+|||++++|+..- ++||++.+..+.
T Consensus 348 ~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~ 395 (566)
T KOG2315|consen 348 LIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH 395 (566)
T ss_pred hccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceee
Confidence 888876443 3567899999999888643 999999887764
No 236
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=2.2e-14 Score=118.62 Aligned_cols=221 Identities=11% Similarity=0.083 Sum_probs=139.4
Q ss_pred eEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEE
Q 036585 38 SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCF 117 (304)
Q Consensus 38 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 117 (304)
.|.++|....+. +.+..+...+....|+|||+.|+..+.......|++||+.+++... +....+......|+|||+.|
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence 566778654433 4455566688899999999999988753113468899998876432 22223334578999999977
Q ss_pred EE-cccCCe--EEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC-
Q 036585 118 IS-GSLDRT--VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM- 193 (304)
Q Consensus 118 ~~-~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 193 (304)
+. .+.++. |+++|+.+++..... .+.......+|+|||+.++..+.
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~~lt------------------------------~~~~~~~~p~wSpDG~~I~f~s~~ 326 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALTRIT------------------------------RHRAIDTEPSWHPDGKSLIFTSER 326 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeEECc------------------------------cCCCCccceEECCCCCEEEEEECC
Confidence 65 455564 777788766543221 12234456899999998877654
Q ss_pred CC--eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecC-CC--cEEEEecCCCceeeeeeccCCCCceEEe
Q 036585 194 EG--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG-DG--SVHAWSVRSGKEVASWMSFDTEPPVIKW 268 (304)
Q Consensus 194 dg--~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~i~~~~~ 268 (304)
++ .|+++|+.+++... +.. ........+|+|||++|+..+. ++ .|.++|+.+++.. .+... .......|
T Consensus 327 ~g~~~Iy~~dl~~g~~~~-Lt~---~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~ 400 (448)
T PRK04792 327 GGKPQIYRVNLASGKVSR-LTF---EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSV 400 (448)
T ss_pred CCCceEEEEECCCCCEEE-Eec---CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceE
Confidence 33 57777887776543 221 2222345789999999877654 33 4666788777643 33222 12234589
Q ss_pred CCCCcEEEEecCc-----eEEeccCCccccccc
Q 036585 269 APGSLMFVTGSSE-----LSFWIPDLSKLGAYV 296 (304)
Q Consensus 269 ~~~~~~l~s~~~d-----~~iw~~~~~~~~~~~ 296 (304)
+|||+.|+..+.+ +.+++.+......+.
T Consensus 401 spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~ 433 (448)
T PRK04792 401 APNGTMVIYSTTYQGKQVLAAVSIDGRFKARLP 433 (448)
T ss_pred CCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence 9999988776654 444555655544443
No 237
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.72 E-value=1.5e-14 Score=115.87 Aligned_cols=232 Identities=14% Similarity=0.182 Sum_probs=139.9
Q ss_pred eEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc
Q 036585 20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK 99 (304)
Q Consensus 20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~ 99 (304)
.+.+++||+++++++.||.|.++|+.+++.+.+++... ....+++++||++++++... ++.+.++|.++.+.++.+.
T Consensus 41 ~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~--~~~v~v~D~~tle~v~~I~ 117 (369)
T PF02239_consen 41 GLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYE--PGTVSVIDAETLEPVKTIP 117 (369)
T ss_dssp EEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEE--TTEEEEEETTT--EEEEEE
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecC--CCceeEeccccccceeecc
Confidence 36688999999999999999999999999999998655 56789999999999988764 8999999999988877664
Q ss_pred cc-------cccEEEEEEcCCCCEEEEccc-CCeEEEEeCCcceeece--EEEecc-ceeEecCCCeEE-E--ecCCCe-
Q 036585 100 GH-------HDRVVLLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGL--LRVQGR-PAAAYDDQGLVF-G--YEKGPL- 164 (304)
Q Consensus 100 ~~-------~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~--~~~~~~-~~~~~~~~~~~~-~--~~~~~~- 164 (304)
.. ...+.++..+|....++..-. .+.|.+.|....+.... +..... .-..+++++.++ . .....+
T Consensus 118 ~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~ 197 (369)
T PF02239_consen 118 TGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIA 197 (369)
T ss_dssp --EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEE
T ss_pred cccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeE
Confidence 22 235666666776664544433 36666666555432221 111111 112333333221 0 000000
Q ss_pred ---------------------------------EEEE------------------------------ecCCCCCceEEEE
Q 036585 165 ---------------------------------DIFS------------------------------VGGDISDANVVKF 181 (304)
Q Consensus 165 ---------------------------------~~~~------------------------------~~~~~~~v~~~~~ 181 (304)
.+|. +...... .-+..
T Consensus 198 viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~t 276 (369)
T PF02239_consen 198 VIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKT 276 (369)
T ss_dssp EEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE-
T ss_pred EEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeec
Confidence 0011 1111122 44677
Q ss_pred ecCCcEEEEe----eCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecC--CCcEEEEecCCCceeee
Q 036585 182 SNDGRLMLLT----TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG--DGSVHAWSVRSGKEVAS 255 (304)
Q Consensus 182 ~~~~~~l~~~----~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~v~d~~~~~~~~~ 255 (304)
+|+++++.+. ...++|.++|.++.+...++.. .....+..+.|+++|+++..+.. ++.|.+||.++.+.+.+
T Consensus 277 hP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~--~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~ 354 (369)
T PF02239_consen 277 HPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITP--GPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKR 354 (369)
T ss_dssp -TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHH--HHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred CCCCccEEeeccCCCCCceEEEEECcCcceeEEEec--cCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEE
Confidence 9999999987 4457999999999877666642 12234888999999998776654 34699999999999888
Q ss_pred ee
Q 036585 256 WM 257 (304)
Q Consensus 256 ~~ 257 (304)
++
T Consensus 355 i~ 356 (369)
T PF02239_consen 355 IP 356 (369)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 238
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=1.1e-14 Score=120.51 Aligned_cols=212 Identities=17% Similarity=0.126 Sum_probs=137.5
Q ss_pred eEeecccCcEEEEeeCC-C--eEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCC--ceEEEEccCcee
Q 036585 20 ILQSMEVGIYLVTASDD-E--SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE--SLRLLSLHDNKY 94 (304)
Q Consensus 20 ~i~~~~~~~~l~~~~~d-~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~--~i~vwd~~~~~~ 94 (304)
...++|||+.|+..+.+ + .|.+||+.+++... +..........+|+||++.|+..... ++ .|+++|+.+++.
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~--~g~~~Iy~~dl~tg~~ 298 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSK--DGQPEIYVVDIATKAL 298 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeC--CCCeEEEEEECCCCCe
Confidence 46899999988876543 2 58888988776432 22222234578999999988876442 44 588889887764
Q ss_pred eeecccccccEEEEEEcCCCCEEEEccc-CC--eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecC
Q 036585 95 SRYFKGHHDRVVLLSLCSSKDCFISGSL-DR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGG 171 (304)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (304)
. .+..+........|+||++.++..+. ++ .|+++|+.+++..... ..
T Consensus 299 ~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~---------------------------- 348 (448)
T PRK04792 299 T-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FE---------------------------- 348 (448)
T ss_pred E-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cC----------------------------
Confidence 3 34445556678899999998766543 33 5666677665432221 01
Q ss_pred CCCCceEEEEecCCcEEEEeeCC-C--eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecC-CC--cEEEE
Q 036585 172 DISDANVVKFSNDGRLMLLTTME-G--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG-DG--SVHAW 245 (304)
Q Consensus 172 ~~~~v~~~~~~~~~~~l~~~~~d-g--~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg--~i~v~ 245 (304)
.......+|+|||++++..+.+ + .|.++|+.+++... +.. . .......|+|||+.|+..+. ++ .++++
T Consensus 349 -g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~---~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~ 422 (448)
T PRK04792 349 -GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTS---T-RLDESPSVAPNGTMVIYSTTYQGKQVLAAV 422 (448)
T ss_pred -CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccC---C-CCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence 0112346899999988876553 3 56778888776432 221 1 11224589999998876553 33 37777
Q ss_pred ecCCCceeeeeeccCCCCceEEeCCC
Q 036585 246 SVRSGKEVASWMSFDTEPPVIKWAPG 271 (304)
Q Consensus 246 d~~~~~~~~~~~~~~~~i~~~~~~~~ 271 (304)
+. +++....+..+.+.+...+|+|-
T Consensus 423 ~~-~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 423 SI-DGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred EC-CCCceEECcCCCCCcCCCccCCC
Confidence 86 56666667666777888899873
No 239
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.70 E-value=1.2e-14 Score=120.39 Aligned_cols=212 Identities=16% Similarity=0.124 Sum_probs=139.9
Q ss_pred eEeecccCcEEEEeeCC---CeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee
Q 036585 20 ILQSMEVGIYLVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR 96 (304)
Q Consensus 20 ~i~~~~~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~ 96 (304)
...++|+|++|+.++.+ ..|++||+.+++... +..+...+.+++|+|+++.|+.......+..|++||+.+++...
T Consensus 194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~ 272 (417)
T TIGR02800 194 SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR 272 (417)
T ss_pred cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE
Confidence 45689999999987654 479999998876543 33344566778999999988766542114568999998775433
Q ss_pred ecccccccEEEEEEcCCCCEEEEccc-CC--eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCC
Q 036585 97 YFKGHHDRVVLLSLCSSKDCFISGSL-DR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDI 173 (304)
Q Consensus 97 ~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (304)
+..+........|+|+++.|+..+. ++ .|+++|+.+++..... .+.
T Consensus 273 -l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~------------------------------~~~ 321 (417)
T TIGR02800 273 -LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLT------------------------------FRG 321 (417)
T ss_pred -CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee------------------------------cCC
Confidence 3335445567789999998876554 33 5777787655432111 122
Q ss_pred CCceEEEEecCCcEEEEeeCCC---eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCC---cEEEEec
Q 036585 174 SDANVVKFSNDGRLMLLTTMEG---HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG---SVHAWSV 247 (304)
Q Consensus 174 ~~v~~~~~~~~~~~l~~~~~dg---~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~v~d~ 247 (304)
.....+.|+|+|++++.++.++ .|.+||+.++.... +. .........|+||+++|+..+.++ .+++.+.
T Consensus 322 ~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~----~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 322 GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LT----DTGLDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-cc----CCCCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 3456688999999999888776 89999988755422 22 112234568999999888776543 3556554
Q ss_pred CCCceeeeeeccCCCCceEEeC
Q 036585 248 RSGKEVASWMSFDTEPPVIKWA 269 (304)
Q Consensus 248 ~~~~~~~~~~~~~~~i~~~~~~ 269 (304)
+++....+..+.+.+..+.|+
T Consensus 397 -~g~~~~~~~~~~g~~~~~~ws 417 (417)
T TIGR02800 397 -DGRFRARLPLGNGDVREPAWS 417 (417)
T ss_pred -CCceeeECCCCCCCcCCCCCC
Confidence 455555555445556665553
No 240
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=3.7e-14 Score=116.41 Aligned_cols=225 Identities=13% Similarity=0.092 Sum_probs=136.0
Q ss_pred CeEEEEecCCcceeeeecccccceeEEEEccCCCe--EEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCC
Q 036585 37 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTT--VIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSK 114 (304)
Q Consensus 37 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 114 (304)
..|.+.|...++. +.+.........-.|+|||+. ++..+.......|.+.++.+++..+. ....+......|+|||
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCC
Confidence 3577777765443 344445556778899999986 33344321145688889887764332 2244455678999999
Q ss_pred CEEEEccc-----CCeEEEEeCCcce--eeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcE
Q 036585 115 DCFISGSL-----DRTVLLWDQRAEK--CQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRL 187 (304)
Q Consensus 115 ~~l~~~~~-----dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 187 (304)
+.|+..+. +..+..|++..+. ....+. ..........+|+|||+.
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt----------------------------~~~~~~~~~p~wSPDG~~ 294 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL----------------------------NEAFGTQGNPSFSPDGTR 294 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEee----------------------------cCCCCCcCCeEECCCCCE
Confidence 98876542 2234446655431 101110 011123356799999998
Q ss_pred EEEee-CCCe--EEEEEcCC-CceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC---CcEEEEecCCCceeeeeeccC
Q 036585 188 MLLTT-MEGH--IHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD---GSVHAWSVRSGKEVASWMSFD 260 (304)
Q Consensus 188 l~~~~-~dg~--i~~~d~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~ 260 (304)
|+..+ .+|. |+++++.. +.....+. .....+....|||||++|+..+.+ ..|++||+.+++.. .+....
T Consensus 295 Laf~s~~~g~~~ly~~~~~~~g~~~~~lt---~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~ 370 (428)
T PRK01029 295 LVFVSNKDGRPRIYIMQIDPEGQSPRLLT---KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSP 370 (428)
T ss_pred EEEEECCCCCceEEEEECcccccceEEec---cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCC
Confidence 87765 4564 44445432 22233333 233456778999999988866433 36999999888764 333334
Q ss_pred CCCceEEeCCCCcEEEEecCc-----eEEeccCCcccccc
Q 036585 261 TEPPVIKWAPGSLMFVTGSSE-----LSFWIPDLSKLGAY 295 (304)
Q Consensus 261 ~~i~~~~~~~~~~~l~s~~~d-----~~iw~~~~~~~~~~ 295 (304)
..+....|+|||+.|+..+.+ +.+++++..+...+
T Consensus 371 ~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L 410 (428)
T PRK01029 371 ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKI 410 (428)
T ss_pred CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 467789999999987754332 66667666555444
No 241
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.70 E-value=3.1e-15 Score=128.60 Aligned_cols=224 Identities=14% Similarity=0.177 Sum_probs=161.5
Q ss_pred EecCCcceeeeecccccceeEEEEccCC-CeEEEEecCCCCCceEEEEccCc-------eeeeecccccccEEEEEEcCC
Q 036585 42 YDVTAATCLKTINSKKYGVDLVCFTSHP-TTVIYSSKNGWDESLRLLSLHDN-------KYSRYFKGHHDRVVLLSLCSS 113 (304)
Q Consensus 42 w~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~d~~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~ 113 (304)
|+. .|..+..+..|...+..++.++.. .++++|+. ||+|++|+...- +...++......+.++.+.+.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~---DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~ 1109 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSD---DGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGN 1109 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecC---CceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccC
Confidence 664 478889999999999999888765 89999998 999999998642 222333334568899999999
Q ss_pred CCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEec-CC-cEEEEe
Q 036585 114 KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSN-DG-RLMLLT 191 (304)
Q Consensus 114 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~~l~~~ 191 (304)
++.+|.++.||.|++.++............. ++.+.......+..-+|.. .+ ..++.+
T Consensus 1110 ~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~--------------------ri~n~~~~g~vv~m~a~~~~~~S~~lvy~ 1169 (1431)
T KOG1240|consen 1110 GDQFAVSTKDGSVRVLRIDHYNVSKRVATQV--------------------RIPNLKKDGVVVSMHAFTAIVQSHVLVYA 1169 (1431)
T ss_pred CCeEEEEcCCCeEEEEEccccccccceeeee--------------------ecccccCCCceEEeecccccccceeEEEE
Confidence 9999999999999999987642211111000 0000111111222223322 22 367788
Q ss_pred eCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeee-ccCCCCceEEeCC
Q 036585 192 TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWM-SFDTEPPVIKWAP 270 (304)
Q Consensus 192 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~~ 270 (304)
...+.|..||+++.....+.+... ..+.|++++.+|.+++++.|+..|.+.+||++-+.++..+. ++..+|+.+..+|
T Consensus 1170 T~~~~iv~~D~r~~~~~w~lk~~~-~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~ 1248 (1431)
T KOG1240|consen 1170 TDLSRIVSWDTRMRHDAWRLKNQL-RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCP 1248 (1431)
T ss_pred EeccceEEecchhhhhHHhhhcCc-cccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeec
Confidence 889999999999888777776553 45789999999999999999999999999999888888773 4557888888776
Q ss_pred C---CcEEEEecC-c---eEEeccCCc
Q 036585 271 G---SLMFVTGSS-E---LSFWIPDLS 290 (304)
Q Consensus 271 ~---~~~l~s~~~-d---~~iw~~~~~ 290 (304)
- ....++++. . +.+|+....
T Consensus 1249 ~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1249 TYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred cCCCCceEEEecccCCCceeeeecccC
Confidence 3 345555554 2 999988765
No 242
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=2.9e-14 Score=118.24 Aligned_cols=214 Identities=12% Similarity=0.110 Sum_probs=139.8
Q ss_pred eEeecccCcEEEEeeCC---CeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee
Q 036585 20 ILQSMEVGIYLVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR 96 (304)
Q Consensus 20 ~i~~~~~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~ 96 (304)
...++|+|+.|+..+.+ ..|.+||+.+++... +....+.+....|+|+|+.|+.......+..|++||+.+++..
T Consensus 203 ~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~- 280 (430)
T PRK00178 203 SPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS- 280 (430)
T ss_pred eeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-
Confidence 45789999998876644 368899998876533 3323334557899999999886554211347888899887644
Q ss_pred ecccccccEEEEEEcCCCCEEEEccc-CC--eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCC
Q 036585 97 YFKGHHDRVVLLSLCSSKDCFISGSL-DR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDI 173 (304)
Q Consensus 97 ~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (304)
.+..+........|+|+++.++..+. ++ .|+++|+.+++...... . .
T Consensus 281 ~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~-----------------------------~ 330 (430)
T PRK00178 281 RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-V-----------------------------G 330 (430)
T ss_pred EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-C-----------------------------C
Confidence 34445555677899999997766553 33 57777776665322210 0 0
Q ss_pred CCceEEEEecCCcEEEEeeCC-C--eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC---CcEEEEec
Q 036585 174 SDANVVKFSNDGRLMLLTTME-G--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD---GSVHAWSV 247 (304)
Q Consensus 174 ~~v~~~~~~~~~~~l~~~~~d-g--~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~v~d~ 247 (304)
.......|+|+|++++..+.+ + .|.++|+.+++... +.. ........|+|||+.++..+.+ ..|.++++
T Consensus 331 ~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~----~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 331 NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD----TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC----CCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 112346899999998877653 3 58899998876432 321 1122246899999998776543 34777777
Q ss_pred CCCceeeeeeccCCCCceEEeCCC
Q 036585 248 RSGKEVASWMSFDTEPPVIKWAPG 271 (304)
Q Consensus 248 ~~~~~~~~~~~~~~~i~~~~~~~~ 271 (304)
. +.....+..+.+.+...+|+|-
T Consensus 406 ~-g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 406 N-GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred C-CCceEECcCCCCCcCCCccCCC
Confidence 4 4444555556667788888874
No 243
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.69 E-value=7e-14 Score=104.28 Aligned_cols=254 Identities=11% Similarity=0.164 Sum_probs=165.4
Q ss_pred EeecccCcE-EEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeec-
Q 036585 21 LQSMEVGIY-LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYF- 98 (304)
Q Consensus 21 i~~~~~~~~-l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~- 98 (304)
+.+..+..+ |.....|+.|.+|++...+-...+.....++..++|||+|+.++..+. .+-.|.+|.+.+.+....-
T Consensus 54 ieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tse--F~lriTVWSL~t~~~~~~~~ 131 (447)
T KOG4497|consen 54 IEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSE--FDLRITVWSLNTQKGYLLPH 131 (447)
T ss_pred eeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeec--ceeEEEEEEeccceeEEecc
Confidence 556667655 445678889999999988888888888889999999999988877775 3999999999875432110
Q ss_pred -------------------------------------------c-------------------------------ccc-c
Q 036585 99 -------------------------------------------K-------------------------------GHH-D 103 (304)
Q Consensus 99 -------------------------------------------~-------------------------------~~~-~ 103 (304)
. -|. -
T Consensus 132 pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~l 211 (447)
T KOG4497|consen 132 PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGL 211 (447)
T ss_pred cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeecc
Confidence 0 011 1
Q ss_pred cEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEE----ec-----------------cceeEecCCC--------
Q 036585 104 RVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV----QG-----------------RPAAAYDDQG-------- 154 (304)
Q Consensus 104 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~-----------------~~~~~~~~~~-------- 154 (304)
.+..++|+|.+++++.|+.|+.+|+.+--+-+....+-. +. .....+.|..
T Consensus 212 G~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~ 291 (447)
T KOG4497|consen 212 GLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEE 291 (447)
T ss_pred ceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCcccc
Confidence 233455555566666666666665544322222111100 00 0011111111
Q ss_pred --eEEEecCCCeEEEEec------CCCCCceEEEEecCCcEEEEeeC--CCeEEEEEcCCCceeEEEEeCCCCCCcceEE
Q 036585 155 --LVFGYEKGPLDIFSVG------GDISDANVVKFSNDGRLMLLTTM--EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA 224 (304)
Q Consensus 155 --~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~ 224 (304)
..+......+.+..++ +....+.-++|++|..++++-.. -..+.+||++..+....+. ...+|...
T Consensus 292 se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi----Qk~piraf 367 (447)
T KOG4497|consen 292 SETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI----QKHPIRAF 367 (447)
T ss_pred chhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh----hccceeEE
Confidence 0011111122222222 22345677999999998887543 3579999998877666555 67889999
Q ss_pred EEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc
Q 036585 225 SFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE 281 (304)
Q Consensus 225 ~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 281 (304)
.|+|....|+.+.....+++|...-...+. .+...-.|..++|+-+|..++-.+.|
T Consensus 368 ~WdP~~prL~vctg~srLY~W~psg~~~V~-vP~~GF~i~~l~W~~~g~~i~l~~kD 423 (447)
T KOG4497|consen 368 EWDPGRPRLVVCTGKSRLYFWAPSGPRVVG-VPKKGFNIQKLQWLQPGEFIVLCGKD 423 (447)
T ss_pred EeCCCCceEEEEcCCceEEEEcCCCceEEe-cCCCCceeeeEEecCCCcEEEEEcCC
Confidence 999998888888777789999976544333 34455789999999999999999999
No 244
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=2.2e-14 Score=113.87 Aligned_cols=268 Identities=14% Similarity=0.202 Sum_probs=175.3
Q ss_pred cceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCC--------CCCceEEE
Q 036585 16 LSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG--------WDESLRLL 87 (304)
Q Consensus 16 ~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~--------~d~~i~vw 87 (304)
..+..++|+|-|.||+|-...| |.+|--++-..++.+. |. .|.-+.|||..++|++-+..- ....++||
T Consensus 211 WTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 211 WTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred ceeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEE
Confidence 3566799999999999999887 8999877666666664 44 689999999999999987521 13689999
Q ss_pred EccCceeeeecccccc--cE-EEEEEcCCCCEEEEcccCCeEEEEeCCcceeec--eEEEeccceeEecC----------
Q 036585 88 SLHDNKYSRYFKGHHD--RV-VLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG--LLRVQGRPAAAYDD---------- 152 (304)
Q Consensus 88 d~~~~~~~~~~~~~~~--~v-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~---------- 152 (304)
|+.+|...+.+....+ .+ .-+.||.|++++|.-.. ..|.||+..+..... .++..+...+.|+|
T Consensus 288 DI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtp 366 (698)
T KOG2314|consen 288 DIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTP 366 (698)
T ss_pred EccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcc
Confidence 9999988877764222 22 34678999999887766 457777654422211 11111221222222
Q ss_pred -------------------------------------CCeEEEec------------CCCeEEEEecCC---------CC
Q 036585 153 -------------------------------------QGLVFGYE------------KGPLDIFSVGGD---------IS 174 (304)
Q Consensus 153 -------------------------------------~~~~~~~~------------~~~~~~~~~~~~---------~~ 174 (304)
+|.+++.. -..+.++.+... ..
T Consensus 367 e~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke 446 (698)
T KOG2314|consen 367 ETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKE 446 (698)
T ss_pred cccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecch
Confidence 22221110 112334444332 24
Q ss_pred CceEEEEecCCcEEEEeeC---CCeEEEEEcCCC----ceeEEEEeCCCCCCcceEEEEcCCCcEEEEe---cCCCcEEE
Q 036585 175 DANVVKFSNDGRLMLLTTM---EGHIHVLDSFRG----TLLSTYNVKPVSRNSTLEASFSPEGMFVISG---SGDGSVHA 244 (304)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~----~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~---~~dg~i~v 244 (304)
.|...+|.|.|..+++-+. ..++.+|..++. +.+..+ .....+.+.|+|.|++++.+ +..|.+.+
T Consensus 447 ~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~-----dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F 521 (698)
T KOG2314|consen 447 SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL-----DKKFANTVFWSPKGRFVVVAALVSRRGDLEF 521 (698)
T ss_pred heeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh-----cccccceEEEcCCCcEEEEEEecccccceEE
Confidence 5667789999988877543 357888887732 122222 23556779999999998876 46789999
Q ss_pred EecCCCceeeee-eccCCCCceEEeCCCCcEEEEecCc--------eEEeccCCcccc
Q 036585 245 WSVRSGKEVASW-MSFDTEPPVIKWAPGSLMFVTGSSE--------LSFWIPDLSKLG 293 (304)
Q Consensus 245 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~d--------~~iw~~~~~~~~ 293 (304)
+|+........- ..| ...+.+.|.|.|+|+++++.- -+||++.++.++
T Consensus 522 ~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrll~ 578 (698)
T KOG2314|consen 522 YDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRLLK 578 (698)
T ss_pred EecchhhhhhccCccc-cccccceECCCCCEEEEeeehhhhccccceEEEEeecHHHH
Confidence 998743332222 224 346889999999999998753 678888776543
No 245
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=6e-14 Score=111.84 Aligned_cols=234 Identities=16% Similarity=0.211 Sum_probs=146.6
Q ss_pred cccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccccc--ccEEEEEEcCCCCEEEEcccCCeEEEEeCCc
Q 036585 56 KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHH--DRVVLLSLCSSKDCFISGSLDRTVLLWDQRA 133 (304)
Q Consensus 56 ~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 133 (304)
+....+.|..+|||+++++.+. +.-.|++||+.+-..- +..|. ..|.-.-.+.|-..++.-..|.+|-+..--.
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~--YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G 125 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGT--YKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG 125 (703)
T ss_pred CccccceeEecCCCcEEEEecc--cCCceEEEEcccceee--eeecccccceeEEEeccchhhheEeecCceeeehhhcC
Confidence 4456788999999999877664 3889999999865322 22222 2233222333333333333444444322110
Q ss_pred ceeeceEEEeccceeEec-CC-CeEEEecCCCeEEEEec---------CCCCCceEEEEecCCcEEEEeeCCCeEEEEEc
Q 036585 134 EKCQGLLRVQGRPAAAYD-DQ-GLVFGYEKGPLDIFSVG---------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDS 202 (304)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~ 202 (304)
......+...+. -++++ +. ..+++.....+.-++++ ...+.++++..++-..+|++|+.+|.|.+||.
T Consensus 126 ~hy~~RIP~~GR-Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDp 204 (703)
T KOG2321|consen 126 RHYRTRIPKFGR-DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDP 204 (703)
T ss_pred eeeeeecCcCCc-cccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecc
Confidence 000000000000 01111 11 12222222333333332 23478999999999999999999999999999
Q ss_pred CCCceeEEEEeCCC---CCC-----cceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeee-eccCCCCceEEeCCC--
Q 036585 203 FRGTLLSTYNVKPV---SRN-----STLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASW-MSFDTEPPVIKWAPG-- 271 (304)
Q Consensus 203 ~~~~~~~~~~~~~~---~~~-----~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~-- 271 (304)
++.....++..... +.+ .|+++.|+.+|-.+++|..+|.+.|||++..+++..- .+...+|..+.|.+.
T Consensus 205 R~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~ 284 (703)
T KOG2321|consen 205 RDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQ 284 (703)
T ss_pred hhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCC
Confidence 98887777763221 222 4999999999999999999999999999998876543 334567899999875
Q ss_pred CcEEEEecCc-eEEeccCCccccc
Q 036585 272 SLMFVTGSSE-LSFWIPDLSKLGA 294 (304)
Q Consensus 272 ~~~l~s~~~d-~~iw~~~~~~~~~ 294 (304)
+..+++.... ++||+-...+...
T Consensus 285 q~~v~S~Dk~~~kiWd~~~Gk~~a 308 (703)
T KOG2321|consen 285 QNKVVSMDKRILKIWDECTGKPMA 308 (703)
T ss_pred CceEEecchHHhhhcccccCCcee
Confidence 5677777777 9999987766543
No 246
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.66 E-value=6.8e-14 Score=104.87 Aligned_cols=240 Identities=16% Similarity=0.282 Sum_probs=165.1
Q ss_pred eeEeecccCcEEEEeeCCCeEEEEecCCcc-----eeeeecccc------------cceeEEEEccCCC--eEEEEecCC
Q 036585 19 EILQSMEVGIYLVTASDDESIRLYDVTAAT-----CLKTINSKK------------YGVDLVCFTSHPT--TVIYSSKNG 79 (304)
Q Consensus 19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~--~l~~~~~~~ 79 (304)
..|.+...|++||||..+|.|.++.-+... ....++.|. ..|..+.|.+++. .++..+.
T Consensus 29 s~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstN-- 106 (433)
T KOG1354|consen 29 SAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTN-- 106 (433)
T ss_pred eeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecC--
Confidence 457888899999999999999999754322 223344443 3588899988765 4455555
Q ss_pred CCCceEEEEccCceee-----------------------------------eec-ccccccEEEEEEcCCCCEEEEcccC
Q 036585 80 WDESLRLLSLHDNKYS-----------------------------------RYF-KGHHDRVVLLSLCSSKDCFISGSLD 123 (304)
Q Consensus 80 ~d~~i~vwd~~~~~~~-----------------------------------~~~-~~~~~~v~~~~~~~~~~~l~~~~~d 123 (304)
|.+|++|.+...... +.+ ..|+.-|.++.++.|...++++. |
T Consensus 107 -dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-d 184 (433)
T KOG1354|consen 107 -DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-D 184 (433)
T ss_pred -CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-c
Confidence 999999988642110 011 25777889999999998888865 5
Q ss_pred CeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCC-----CCCceEEEEecC-CcEEEEeeCCCeE
Q 036585 124 RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGD-----ISDANVVKFSND-GRLMLLTTMEGHI 197 (304)
Q Consensus 124 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~-~~~l~~~~~dg~i 197 (304)
-.|.+|+++-.... ..+.+++.+ ..-|++..|+|. .+.|+-++..|+|
T Consensus 185 LRINLWnlei~d~s--------------------------FnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtI 238 (433)
T KOG1354|consen 185 LRINLWNLEIIDQS--------------------------FNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTI 238 (433)
T ss_pred eeeeeccccccCCc--------------------------eeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcE
Confidence 78999998643221 122222222 245788899995 4677778889999
Q ss_pred EEEEcCCCceeE----EEEeC--C-------CCCCcceEEEEcCCCcEEEEecCCCcEEEEec-CCCceeeeeeccCC--
Q 036585 198 HVLDSFRGTLLS----TYNVK--P-------VSRNSTLEASFSPEGMFVISGSGDGSVHAWSV-RSGKEVASWMSFDT-- 261 (304)
Q Consensus 198 ~~~d~~~~~~~~----~~~~~--~-------~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~-~~~~~~~~~~~~~~-- 261 (304)
++.|++...+.- .+..+ + .--..|..+.|+++|+|+++-+. -+|++||+ ...+++.+++-|..
T Consensus 239 rLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr 317 (433)
T KOG1354|consen 239 RLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLR 317 (433)
T ss_pred EEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHH
Confidence 999998543221 11111 0 11235778999999999998754 47999999 55677777766532
Q ss_pred ----------CC---ceEEeCCCCcEEEEecCc--eEEeccCC
Q 036585 262 ----------EP---PVIKWAPGSLMFVTGSSE--LSFWIPDL 289 (304)
Q Consensus 262 ----------~i---~~~~~~~~~~~l~s~~~d--~~iw~~~~ 289 (304)
.| ..++|+.++.+++||+.. .++++.+.
T Consensus 318 ~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 318 SKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred HHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCC
Confidence 22 457899999999999988 88998543
No 247
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.65 E-value=1e-14 Score=120.29 Aligned_cols=224 Identities=13% Similarity=0.116 Sum_probs=153.8
Q ss_pred eEeeccc-CcEEEEeeCCCeEEEEecCCcce--eee----ecccccceeEEEEccCCCe--EEEEecCCCCCceEEEEcc
Q 036585 20 ILQSMEV-GIYLVTASDDESIRLYDVTAATC--LKT----INSKKYGVDLVCFTSHPTT--VIYSSKNGWDESLRLLSLH 90 (304)
Q Consensus 20 ~i~~~~~-~~~l~~~~~d~~i~vw~~~~~~~--~~~----~~~~~~~v~~~~~~~~~~~--l~~~~~~~~d~~i~vwd~~ 90 (304)
++.+.|. ..++|.|..+|.|.+||+..+.. ... ...|..++..+.|..+... +++++. ||.|..|+++
T Consensus 247 ~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ss---DG~i~~W~~~ 323 (555)
T KOG1587|consen 247 CLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSS---DGSICSWDTD 323 (555)
T ss_pred EEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEec---CCcEeeeecc
Confidence 4556665 67889999999999999987654 222 2357889999999876555 999998 9999999876
Q ss_pred Cceee------eecc------cccccEEEEEEcC-CCCEEEEcccCCeEEE---EeCCcce-------eeceEEEeccce
Q 036585 91 DNKYS------RYFK------GHHDRVVLLSLCS-SKDCFISGSLDRTVLL---WDQRAEK-------CQGLLRVQGRPA 147 (304)
Q Consensus 91 ~~~~~------~~~~------~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i---wd~~~~~-------~~~~~~~~~~~~ 147 (304)
.-... .... .-...+++++|.+ +...|+.|+.+|.|.. ++.+... ............
T Consensus 324 ~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~ 403 (555)
T KOG1587|consen 324 MLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYA 403 (555)
T ss_pred ccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEe
Confidence 43221 1111 1224678999988 5568999999998876 2222222 233444444443
Q ss_pred eEecCCC--eEEEecCCCeEEEEec----------CCCCCceEEEEecCC-cEEEEeeCCCeEEEEEcCCCc--eeEEEE
Q 036585 148 AAYDDQG--LVFGYEKGPLDIFSVG----------GDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGT--LLSTYN 212 (304)
Q Consensus 148 ~~~~~~~--~~~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~--~~~~~~ 212 (304)
+..+|-. .++...+-.+++|... .+...+++++|||.. ..|+++..+|.|.+||+.... +..+..
T Consensus 404 v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~ 483 (555)
T KOG1587|consen 404 VSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQK 483 (555)
T ss_pred eecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccc
Confidence 3333322 2222236666666554 345569999999976 567778889999999997543 333333
Q ss_pred eCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCC
Q 036585 213 VKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRS 249 (304)
Q Consensus 213 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~ 249 (304)
......+.+.|+++|+.|++|...|.+++|++..
T Consensus 484 ---~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 484 ---VCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ---ccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 2356777889999999999999999999999953
No 248
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.65 E-value=4.1e-14 Score=113.01 Aligned_cols=188 Identities=10% Similarity=0.185 Sum_probs=146.3
Q ss_pred cCCCeEEEEecCCCCCceEEEEccCceeeeecccc---cccEEEEEEc------C--------------CCCEEEEcccC
Q 036585 67 SHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGH---HDRVVLLSLC------S--------------SKDCFISGSLD 123 (304)
Q Consensus 67 ~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~---~~~v~~~~~~------~--------------~~~~l~~~~~d 123 (304)
|...+++.... ||.+++|+...++..+.+... .+..++..|. | +-..++-|...
T Consensus 3 ~~~~~~A~~~~---~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~ 79 (541)
T KOG4547|consen 3 PALDYFALSTG---DGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ 79 (541)
T ss_pred chhheEeecCC---CCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCC
Confidence 44567777777 999999999998876665421 2223333332 1 12256667777
Q ss_pred CeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcC
Q 036585 124 RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF 203 (304)
Q Consensus 124 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~ 203 (304)
|.|.+|++..++....+.. ..|.+.|+++.++.+-..|.+++.|+.+..|+..
T Consensus 80 g~v~~ys~~~g~it~~~st---------------------------~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~ 132 (541)
T KOG4547|consen 80 GSVLLYSVAGGEITAKLST---------------------------DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEK 132 (541)
T ss_pred ccEEEEEecCCeEEEEEec---------------------------CCCCCcceeeecccccCceEecCCceeEEEEecc
Confidence 7788888777766555542 2578899999999999999999999999999999
Q ss_pred CCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCC-----CcEEEEe
Q 036585 204 RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPG-----SLMFVTG 278 (304)
Q Consensus 204 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~s~ 278 (304)
..+.++.+. .....+.+++.+||+..+++++ +.|++||+++++.+..+.+|.++|+++.|-.+ |.++.++
T Consensus 133 ~~~~~~~~~---~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLss 207 (541)
T KOG4547|consen 133 EKVIIRIWK---EQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSS 207 (541)
T ss_pred cceeeeeec---cCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeec
Confidence 999999888 5677788999999999999986 57999999999999999999999999999876 6666554
Q ss_pred cC-c--eEEeccCC
Q 036585 279 SS-E--LSFWIPDL 289 (304)
Q Consensus 279 ~~-d--~~iw~~~~ 289 (304)
.. + +.+|..+.
T Consensus 208 a~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 208 AAAERGITVWVVEK 221 (541)
T ss_pred cccccceeEEEEEc
Confidence 33 3 88898765
No 249
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.63 E-value=1.1e-13 Score=110.62 Aligned_cols=188 Identities=15% Similarity=0.234 Sum_probs=149.9
Q ss_pred ccCcEEEEeeCCCeEEEEecCCcceeeeeccc---ccceeEEEEc--------------------cCCCeEEEEecCCCC
Q 036585 25 EVGIYLVTASDDESIRLYDVTAATCLKTINSK---KYGVDLVCFT--------------------SHPTTVIYSSKNGWD 81 (304)
Q Consensus 25 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~---~~~v~~~~~~--------------------~~~~~l~~~~~~~~d 81 (304)
+...|+|....||.+|+|+..++++.+.+... .+...+..|. .+...++-|.. .
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~---~ 79 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTP---Q 79 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecC---C
Confidence 45689999999999999999988877666531 2334444442 23345666666 9
Q ss_pred CceEEEEccCceeeeecc--cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEe
Q 036585 82 ESLRLLSLHDNKYSRYFK--GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGY 159 (304)
Q Consensus 82 ~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (304)
|.|.+|+...++....+. .|.+.|.++.++.+-..|.+++.|+.+..|+...........
T Consensus 80 g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~------------------ 141 (541)
T KOG4547|consen 80 GSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK------------------ 141 (541)
T ss_pred ccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec------------------
Confidence 999999999998777665 688999999999999999999999999999998877666554
Q ss_pred cCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCC-----CcEEE
Q 036585 160 EKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-----GMFVI 234 (304)
Q Consensus 160 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~-----~~~l~ 234 (304)
..+..+.+++++|||+.+++++ +.|++||+++++.+.+|. +|.++|.++.|--+ |.+++
T Consensus 142 -----------~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ft---gh~s~v~t~~f~~~~~g~~G~~vL 205 (541)
T KOG4547|consen 142 -----------EQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFT---GHGSPVRTLSFTTLIDGIIGKYVL 205 (541)
T ss_pred -----------cCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEec---CCCcceEEEEEEEeccccccceee
Confidence 3345678899999999999887 589999999999999999 89999999999887 67766
Q ss_pred Ee-cCCCcEEEEecCC
Q 036585 235 SG-SGDGSVHAWSVRS 249 (304)
Q Consensus 235 ~~-~~dg~i~v~d~~~ 249 (304)
++ ..+..+.+|-+..
T Consensus 206 ssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 206 SSAAAERGITVWVVEK 221 (541)
T ss_pred eccccccceeEEEEEc
Confidence 65 3455677886654
No 250
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=3e-13 Score=111.12 Aligned_cols=217 Identities=15% Similarity=0.125 Sum_probs=132.8
Q ss_pred EeecccCcE--E-EEeeCCC--eEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecC--CCCCceEEEEccCc-
Q 036585 21 LQSMEVGIY--L-VTASDDE--SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN--GWDESLRLLSLHDN- 92 (304)
Q Consensus 21 i~~~~~~~~--l-~~~~~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~--~~d~~i~vwd~~~~- 92 (304)
-.|+|||+. + ++...+| .|.+.++.+++... +....+.....+|+|||+.|+..+.. ..+..+.+|++..+
T Consensus 190 P~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~ 268 (428)
T PRK01029 190 PTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGA 268 (428)
T ss_pred ceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCC
Confidence 479999874 2 2444444 47777887765433 22233345568999999999887742 11223344676652
Q ss_pred --eeeeecccccccEEEEEEcCCCCEEEEcc-cCCeEEEE--eCCcc-eeeceEEEeccceeEecCCCeEEEecCCCeEE
Q 036585 93 --KYSRYFKGHHDRVVLLSLCSSKDCFISGS-LDRTVLLW--DQRAE-KCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDI 166 (304)
Q Consensus 93 --~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw--d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (304)
+................|+|||+.|+..+ .+|...+| ++... .....+
T Consensus 269 ~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l-------------------------- 322 (428)
T PRK01029 269 IGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL-------------------------- 322 (428)
T ss_pred CCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe--------------------------
Confidence 33333322223446789999999777655 45654454 33221 111111
Q ss_pred EEecCCCCCceEEEEecCCcEEEEeeCC---CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecC---CC
Q 036585 167 FSVGGDISDANVVKFSNDGRLMLLTTME---GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG---DG 240 (304)
Q Consensus 167 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg 240 (304)
......+....|+|||+.|+..+.+ ..|.+||+.+++...... ....+....|+|||++|+.... ..
T Consensus 323 ---t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~----~~~~~~~p~wSpDG~~L~f~~~~~g~~ 395 (428)
T PRK01029 323 ---TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT----SPENKESPSWAIDSLHLVYSAGNSNES 395 (428)
T ss_pred ---ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC----CCCCccceEECCCCCEEEEEECCCCCc
Confidence 1122345678999999988876543 479999998887643322 2345667899999998875432 35
Q ss_pred cEEEEecCCCceeeeeeccCCCCceEEeCCCC
Q 036585 241 SVHAWSVRSGKEVASWMSFDTEPPVIKWAPGS 272 (304)
Q Consensus 241 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 272 (304)
.|+++|+..++.. .+....+.+...+|+|-.
T Consensus 396 ~L~~vdl~~g~~~-~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 396 ELYLISLITKKTR-KIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred eEEEEECCCCCEE-EeecCCCcccCceecCCC
Confidence 6889999877653 333355567788898753
No 251
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.62 E-value=2.6e-11 Score=95.30 Aligned_cols=226 Identities=14% Similarity=0.147 Sum_probs=144.7
Q ss_pred ecccCcEEEEeeC----------CCeEEEEecCCcceeeeeccccc-------ceeEEEEccCCCeEEEEecCCCCCceE
Q 036585 23 SMEVGIYLVTASD----------DESIRLYDVTAATCLKTINSKKY-------GVDLVCFTSHPTTVIYSSKNGWDESLR 85 (304)
Q Consensus 23 ~~~~~~~l~~~~~----------d~~i~vw~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~~~~~d~~i~ 85 (304)
.++||+.|+++.. +..|.+||..+++.+..+..... ....++++|||++|++.... .+..|.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~-p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFS-PSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCC-CCCEEE
Confidence 8899988877765 67899999999999988875322 23478999999999987642 278999
Q ss_pred EEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCccee--eceEEE--e------ccceeEecCCCe
Q 036585 86 LLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKC--QGLLRV--Q------GRPAAAYDDQGL 155 (304)
Q Consensus 86 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~--~------~~~~~~~~~~~~ 155 (304)
+.|+.+++.+..+.- .+...-+..+++...+ -+.||......+..... ...... . ..+.........
T Consensus 132 VvD~~~~kvv~ei~v-p~~~~vy~t~e~~~~~--~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~ 208 (352)
T TIGR02658 132 VVDLEGKAFVRMMDV-PDCYHIFPTANDTFFM--HCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRL 208 (352)
T ss_pred EEECCCCcEEEEEeC-CCCcEEEEecCCccEE--EeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcE
Confidence 999999998877663 2222222222222221 12334333322221111 011010 0 111111101223
Q ss_pred EEEecCCCeEEEEecC---------------------CCCCceEEEEecCCcEEEEee----------CCCeEEEEEcCC
Q 036585 156 VFGYEKGPLDIFSVGG---------------------DISDANVVKFSNDGRLMLLTT----------MEGHIHVLDSFR 204 (304)
Q Consensus 156 ~~~~~~~~~~~~~~~~---------------------~~~~v~~~~~~~~~~~l~~~~----------~dg~i~~~d~~~ 204 (304)
++....+.+.+.++.+ ......-++++|+++.+++.. ..+.|.++|..+
T Consensus 209 ~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t 288 (352)
T TIGR02658 209 VWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT 288 (352)
T ss_pred EEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC
Confidence 3322235555554321 123334599999999888843 124799999999
Q ss_pred CceeEEEEeCCCCCCcceEEEEcCCCc-EEEEec-CCCcEEEEecCCCceeeee
Q 036585 205 GTLLSTYNVKPVSRNSTLEASFSPEGM-FVISGS-GDGSVHAWSVRSGKEVASW 256 (304)
Q Consensus 205 ~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~v~d~~~~~~~~~~ 256 (304)
++.+..+. ....+..++++||++ +|++.. .++.|.++|..+++.++++
T Consensus 289 ~kvi~~i~----vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 289 GKRLRKIE----LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CeEEEEEe----CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 99999988 456888999999999 888776 5788999999999998887
No 252
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=1.4e-11 Score=93.46 Aligned_cols=247 Identities=13% Similarity=0.150 Sum_probs=169.0
Q ss_pred cceeeEeecccCcEEEEeeCC---CeEEEEecCC--cce--eeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEE
Q 036585 16 LSEEILQSMEVGIYLVTASDD---ESIRLYDVTA--ATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 88 (304)
Q Consensus 16 ~~~~~i~~~~~~~~l~~~~~d---~~i~vw~~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd 88 (304)
..+..+.+.+++++|.++-.+ |.|-.|.++. |++ +........+...+++++++++++++... -|.|.++-
T Consensus 40 ~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~--~g~v~v~p 117 (346)
T COG2706 40 GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYH--SGSVSVYP 117 (346)
T ss_pred CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEcc--CceEEEEE
Confidence 345668889999998888654 6677777664 443 22222233345889999999999999986 79999999
Q ss_pred ccC-ceeee--eccccccc----------EEEEEEcCCCCEEEEccc-CCeEEEEeCCcceeeceEEEeccceeEecCCC
Q 036585 89 LHD-NKYSR--YFKGHHDR----------VVLLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQG 154 (304)
Q Consensus 89 ~~~-~~~~~--~~~~~~~~----------v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 154 (304)
++. |.... .+..|.+. +.+..+.|+++++++... -..|.+|++..++....-...-
T Consensus 118 ~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v---------- 187 (346)
T COG2706 118 LQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV---------- 187 (346)
T ss_pred cccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc----------
Confidence 865 33211 12235444 888999999999988753 2468999998665433221110
Q ss_pred eEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC-CCeEEEEEcCCC-ceeEEEEeCC------CCCCcceEEEE
Q 036585 155 LVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFRG-TLLSTYNVKP------VSRNSTLEASF 226 (304)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~-~~~~~~~~~~------~~~~~i~~~~~ 226 (304)
......+.|.|+|++++..+.++ +++|.+|..... .....++... ......-.+..
T Consensus 188 ----------------~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi 251 (346)
T COG2706 188 ----------------KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI 251 (346)
T ss_pred ----------------CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE
Confidence 13346688999999998877654 889999998763 2333333110 12345667899
Q ss_pred cCCCcEEEEecC-CCcEEEEecCC--Cce--eeeeeccCCCCceEEeCCCCcEEEEecCc---eEEeccCCc
Q 036585 227 SPEGMFVISGSG-DGSVHAWSVRS--GKE--VASWMSFDTEPPVIKWAPGSLMFVTGSSE---LSFWIPDLS 290 (304)
Q Consensus 227 s~~~~~l~~~~~-dg~i~v~d~~~--~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---~~iw~~~~~ 290 (304)
+|||++|+++.. ...|.+|.+.. +++ +.....+....+...|+|++++|+++..+ +.+|..+.+
T Consensus 252 s~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 252 SPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred CCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 999999999863 34688887754 322 22334455568999999999999999987 888877543
No 253
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.59 E-value=6.8e-14 Score=118.58 Aligned_cols=188 Identities=15% Similarity=0.198 Sum_probs=149.9
Q ss_pred cCcEEEEeeCCCeEEEEecCCcceeeeeccccc----ceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccc
Q 036585 26 VGIYLVTASDDESIRLYDVTAATCLKTINSKKY----GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGH 101 (304)
Q Consensus 26 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~ 101 (304)
..+.++.+..+..+.+||...+.....+..... ...-+-++++.-++++|+. -+.|.+|+....+....+.+|
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv---~~~iivW~~~~dn~p~~l~GH 174 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSV---FGEIIVWKPHEDNKPIRLKGH 174 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccc---cccEEEEeccccCCcceeccc
Confidence 466788888888999999988777766664432 2223345667778888888 999999999855544468899
Q ss_pred cccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEE
Q 036585 102 HDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKF 181 (304)
Q Consensus 102 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 181 (304)
.+.|.++.|+.+|+++++.+.|.++++|++++.+...... -+|...+..+.|
T Consensus 175 eG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~----------------------------fgHsaRvw~~~~ 226 (967)
T KOG0974|consen 175 EGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTG----------------------------FGHSARVWACCF 226 (967)
T ss_pred CCceEEEEEccCCcEEEEEecCcceeeeecccccccCccc----------------------------ccccceeEEEEe
Confidence 9999999999999999999999999999999887655111 158889999999
Q ss_pred ecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCC
Q 036585 182 SNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRS 249 (304)
Q Consensus 182 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~ 249 (304)
.|+ .+++++.|-+.++|+.. ++.+..+.. .....+..++..++...+++++.|+.+++||+..
T Consensus 227 ~~n--~i~t~gedctcrvW~~~-~~~l~~y~~--h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 227 LPN--RIITVGEDCTCRVWGVN-GTQLEVYDE--HSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ccc--eeEEeccceEEEEEecc-cceehhhhh--hhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 998 89999999999999754 444445552 1345788999999999999999999999999854
No 254
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.59 E-value=8.6e-13 Score=99.01 Aligned_cols=233 Identities=13% Similarity=0.188 Sum_probs=165.4
Q ss_pred eeeeecceeeEe---ecccCcEEEEeeCCCeEEEEecC-Ccceeeeec-ccccceeEEEEccCCCeEEEEecCCCCCceE
Q 036585 11 KVSLELSEEILQ---SMEVGIYLVTASDDESIRLYDVT-AATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 85 (304)
Q Consensus 11 ~~~~~~~~~~i~---~~~~~~~l~~~~~d~~i~vw~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~ 85 (304)
...+++|.+.+. ..|-.+-+++.+.|.++|||--. .++.-..+. ....+++++.+.++...|+++-. .|++.
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~---ngtvt 93 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQD---NGTVT 93 (404)
T ss_pred hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEe---cceEE
Confidence 344566655543 33446678999999999999543 344333332 23468899999999999999998 89998
Q ss_pred EEEcc----CceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccce-------eEe--cC
Q 036585 86 LLSLH----DNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA-------AAY--DD 152 (304)
Q Consensus 86 vwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------~~~--~~ 152 (304)
-+.+. ....++....|...+..+.|+....++++.+.|..+.---.+.+..+..+....... ..+ +.
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~ 173 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDH 173 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEeccc
Confidence 88664 334566677899999999999888899999999877655555554443332221110 111 11
Q ss_pred CCeEE---EecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeE-EEEeCCCCCCcceEEEEcC
Q 036585 153 QGLVF---GYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS-TYNVKPVSRNSTLEASFSP 228 (304)
Q Consensus 153 ~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~-~~~~~~~~~~~i~~~~~s~ 228 (304)
.+.+. ......-.+..+.+|...+.+++|.|....+.+|..|..+.+||+--.+-+. ... +|...+..++.-+
T Consensus 174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~---gh~~kV~~l~~~~ 250 (404)
T KOG1409|consen 174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQ---GHNDKVQALSYAQ 250 (404)
T ss_pred ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeec---cchhhhhhhhhhh
Confidence 11111 2233444566778899999999999999999999999999999985443322 223 5788888888888
Q ss_pred CCcEEEEecCCCcEEEEecCC
Q 036585 229 EGMFVISGSGDGSVHAWSVRS 249 (304)
Q Consensus 229 ~~~~l~~~~~dg~i~v~d~~~ 249 (304)
--+.+.+++.||.|.+|+++.
T Consensus 251 ~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 251 HTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hheeeeeccCCCeEEEEeccc
Confidence 888899999999999999864
No 255
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=1.4e-11 Score=100.67 Aligned_cols=218 Identities=12% Similarity=0.063 Sum_probs=136.3
Q ss_pred eEEEEecCCcceeeeecccccceeEEEEccCCCe-EEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCE
Q 036585 38 SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTT-VIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDC 116 (304)
Q Consensus 38 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 116 (304)
.|.+-|..... .+.+.... ......|+|+++. ++..+..+.+..|.++|+.+++...... ..+......|+|||+.
T Consensus 170 ~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~ 246 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSK 246 (419)
T ss_pred eEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCE
Confidence 55565654333 33333333 6778999999985 6655553225679999998887544433 4555667889999986
Q ss_pred EEEc-cc--CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC
Q 036585 117 FISG-SL--DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM 193 (304)
Q Consensus 117 l~~~-~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 193 (304)
++.. +. +..|.++|+.++....... +........|+|||+.|+..+.
T Consensus 247 la~~~~~~g~~~Iy~~dl~~g~~~~LT~------------------------------~~~~d~~p~~SPDG~~I~F~Sd 296 (419)
T PRK04043 247 LLLTMAPKGQPDIYLYDTNTKTLTQITN------------------------------YPGIDVNGNFVEDDKRIVFVSD 296 (419)
T ss_pred EEEEEccCCCcEEEEEECCCCcEEEccc------------------------------CCCccCccEECCCCCEEEEEEC
Confidence 6543 32 3568888887665332211 1111234579999988777654
Q ss_pred C-C--eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC---------CcEEEEecCCCceeeeeeccCC
Q 036585 194 E-G--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD---------GSVHAWSVRSGKEVASWMSFDT 261 (304)
Q Consensus 194 d-g--~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---------g~i~v~d~~~~~~~~~~~~~~~ 261 (304)
. + .|+++|+.+++...... .... ...|||||++|+..... ..|.+.|+.+++. ..+... .
T Consensus 297 r~g~~~Iy~~dl~~g~~~rlt~----~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~ 368 (419)
T PRK04043 297 RLGYPNIFMKKLNSGSVEQVVF----HGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-G 368 (419)
T ss_pred CCCCceEEEEECCCCCeEeCcc----CCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-C
Confidence 2 3 68888988777644332 1111 24899999988766533 3688889887764 344332 2
Q ss_pred CCceEEeCCCCcEEEEecCc-----eEEeccCCccccccc
Q 036585 262 EPPVIKWAPGSLMFVTGSSE-----LSFWIPDLSKLGAYV 296 (304)
Q Consensus 262 ~i~~~~~~~~~~~l~s~~~d-----~~iw~~~~~~~~~~~ 296 (304)
......|+|||+.++..+.+ +.+.+++.+....+.
T Consensus 369 ~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~ 408 (419)
T PRK04043 369 VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFP 408 (419)
T ss_pred CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEee
Confidence 34468899999988766544 445556665544443
No 256
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=2.3e-14 Score=111.97 Aligned_cols=211 Identities=11% Similarity=0.125 Sum_probs=158.0
Q ss_pred eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc-cccccEEEEEEcCC--CCEEEEcccCCe
Q 036585 49 CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK-GHHDRVVLLSLCSS--KDCFISGSLDRT 125 (304)
Q Consensus 49 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~dg~ 125 (304)
+...|..|.+.|..+.|+..|..|++++. |..|.+||...++....+. +|...|....|.|. ...+++++.||.
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSD---D~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSD---DLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCc---cceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 34567789999999999999999999999 9999999999988766654 79889998999983 457999999999
Q ss_pred EEEEeCCcceeec-eEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCC-cEEEEeeCCCeEEEEEcC
Q 036585 126 VLLWDQRAEKCQG-LLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSF 203 (304)
Q Consensus 126 i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~ 203 (304)
+++=.+....... .. .+..|.+.|..++.-|+. ..|.+++.|+.+.-+|++
T Consensus 211 vr~s~i~~t~~~e~t~---------------------------rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr 263 (559)
T KOG1334|consen 211 VRVSEILETGYVENTK---------------------------RLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLR 263 (559)
T ss_pred eeeeeeccccceecce---------------------------ecccccCccceeeecCCCCCcccccccccceeeeeec
Confidence 9986654332221 21 123578899999998865 568899999999999999
Q ss_pred CCceeEEEEeCCCCCC---cceEEEEcCCCc-EEEEecCCCcEEEEecCCCce------eeeee------ccCCCCceEE
Q 036585 204 RGTLLSTYNVKPVSRN---STLEASFSPEGM-FVISGSGDGSVHAWSVRSGKE------VASWM------SFDTEPPVIK 267 (304)
Q Consensus 204 ~~~~~~~~~~~~~~~~---~i~~~~~s~~~~-~l~~~~~dg~i~v~d~~~~~~------~~~~~------~~~~~i~~~~ 267 (304)
++.+...+........ ....++..|-.. .+++++.|-.+++||.+.... +..+. ...-.|++++
T Consensus 264 ~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~ 343 (559)
T KOG1334|consen 264 QDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLV 343 (559)
T ss_pred cCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEE
Confidence 8877766654433444 677889999554 799999999999999875322 23332 2234689999
Q ss_pred eCCCCc-EEEEecCc-eEEeccCC
Q 036585 268 WAPGSL-MFVTGSSE-LSFWIPDL 289 (304)
Q Consensus 268 ~~~~~~-~l~s~~~d-~~iw~~~~ 289 (304)
|+.++. +|++-... +.++.-+.
T Consensus 344 Ysh~~sElLaSYnDe~IYLF~~~~ 367 (559)
T KOG1334|consen 344 YSHDGSELLASYNDEDIYLFNKSM 367 (559)
T ss_pred ecCCccceeeeecccceEEecccc
Confidence 996654 55554444 77775443
No 257
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.57 E-value=3.2e-11 Score=96.83 Aligned_cols=227 Identities=15% Similarity=0.187 Sum_probs=141.9
Q ss_pred eeeEeecccCcEEEEeeC-CCeEEEEecCC-cceeee---ec----------ccccceeEEEEccCCCeEEEEecCCCCC
Q 036585 18 EEILQSMEVGIYLVTASD-DESIRLYDVTA-ATCLKT---IN----------SKKYGVDLVCFTSHPTTVIYSSKNGWDE 82 (304)
Q Consensus 18 ~~~i~~~~~~~~l~~~~~-d~~i~vw~~~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~l~~~~~~~~d~ 82 (304)
+..+...+++++|+++.. +|.|.++++.. +.+... +. ......+++.|+|+++++++...+ ..
T Consensus 89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG--~D 166 (345)
T PF10282_consen 89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG--AD 166 (345)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT--TT
T ss_pred cEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC--CC
Confidence 345788899999999874 88999999986 333222 11 112357899999999999988764 66
Q ss_pred ceEEEEccCce--e--eeecc-cccccEEEEEEcCCCCEEEEc-ccCCeEEEEeCC--cceeeceEEEeccceeEecCCC
Q 036585 83 SLRLLSLHDNK--Y--SRYFK-GHHDRVVLLSLCSSKDCFISG-SLDRTVLLWDQR--AEKCQGLLRVQGRPAAAYDDQG 154 (304)
Q Consensus 83 ~i~vwd~~~~~--~--~~~~~-~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~ 154 (304)
.|.+|++.... . ...+. ........+.|+|++++++.. ..++.|.++++. .+...........+. ..
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~---~~-- 241 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE---GF-- 241 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET---TS--
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc---cc--
Confidence 89999997654 2 11222 233467889999999977654 567889999887 332221111111000 00
Q ss_pred eEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC-CCeEEEEEcC--CCceeEEEEeCCCCCCcceEEEEcCCCc
Q 036585 155 LVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSF--RGTLLSTYNVKPVSRNSTLEASFSPEGM 231 (304)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~--~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 231 (304)
........++++|||++|+++.. .+.|.+|++. +++....-... ........++++|+|+
T Consensus 242 ----------------~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~-~~G~~Pr~~~~s~~g~ 304 (345)
T PF10282_consen 242 ----------------TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP-TGGKFPRHFAFSPDGR 304 (345)
T ss_dssp ----------------CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE-ESSSSEEEEEE-TTSS
T ss_pred ----------------cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe-CCCCCccEEEEeCCCC
Confidence 01125678999999999888764 6689999983 34433222211 2344578899999999
Q ss_pred EEEEec-CCCcEEEEec--CCCceeeeee-ccCCCCceEEe
Q 036585 232 FVISGS-GDGSVHAWSV--RSGKEVASWM-SFDTEPPVIKW 268 (304)
Q Consensus 232 ~l~~~~-~dg~i~v~d~--~~~~~~~~~~-~~~~~i~~~~~ 268 (304)
+|+++. .++.|.+|++ ++|.+...-. .......||.|
T Consensus 305 ~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 305 YLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 999876 5568999976 4555433321 23344566665
No 258
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.54 E-value=3.4e-11 Score=95.10 Aligned_cols=261 Identities=14% Similarity=0.167 Sum_probs=175.0
Q ss_pred eEeecccCcEEEEeeCCCe---------------EEEEecCCcceeeeecccccc--ee-EEEEccCCCeEEEEecCCCC
Q 036585 20 ILQSMEVGIYLVTASDDES---------------IRLYDVTAATCLKTINSKKYG--VD-LVCFTSHPTTVIYSSKNGWD 81 (304)
Q Consensus 20 ~i~~~~~~~~l~~~~~d~~---------------i~vw~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~~~~~~~~d 81 (304)
-+.++|.++||.+-+..+. +.+||..++..+..+.....+ .. -+.|+.+.++++-.. .
T Consensus 76 ~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv----~ 151 (561)
T COG5354 76 YLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV----G 151 (561)
T ss_pred ecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc----c
Confidence 3678889999998876544 899999999999988876554 44 688999998887775 6
Q ss_pred CceEEEEccCceeeeecccc-cccEEEEEEcCCC--CEEEE-----cccCCeEEEEeCCcceeeceEEE--eccceeEec
Q 036585 82 ESLRLLSLHDNKYSRYFKGH-HDRVVLLSLCSSK--DCFIS-----GSLDRTVLLWDQRAEKCQGLLRV--QGRPAAAYD 151 (304)
Q Consensus 82 ~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~--~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~ 151 (304)
..++|+++...-....+..- ...|....|+|.+ ..|+. ....+.+++|.+..++.+..... -....+.|.
T Consensus 152 ~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~ 231 (561)
T COG5354 152 SSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQ 231 (561)
T ss_pred CeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEe
Confidence 68999997322111112111 3568888899853 34443 45678999999886665544332 222234444
Q ss_pred CCCeEE-------------EecCCCeEEEEec--------CCCCCceEEEEecCCcEEEEee--CCCeEEEEEcCCCcee
Q 036585 152 DQGLVF-------------GYEKGPLDIFSVG--------GDISDANVVKFSNDGRLMLLTT--MEGHIHVLDSFRGTLL 208 (304)
Q Consensus 152 ~~~~~~-------------~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~ 208 (304)
+.+.++ -+....+.++.+. ...++|..++|+|.++.|++.+ ....+.++|++.. ..
T Consensus 232 ~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~ 310 (561)
T COG5354 232 VLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LR 310 (561)
T ss_pred cCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eE
Confidence 444222 1222344455443 2367899999999988877654 6788999998765 33
Q ss_pred EEEEeCCCCCCcceEEEEcCCCcEEEEecCC---CcEEEEecCCCceee-eeeccCCCCceEEeCCCCcEEEEecC----
Q 036585 209 STYNVKPVSRNSTLEASFSPEGMFVISGSGD---GSVHAWSVRSGKEVA-SWMSFDTEPPVIKWAPGSLMFVTGSS---- 280 (304)
Q Consensus 209 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~v~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~~---- 280 (304)
..+ ....-+.+.|+|.+++++.++-| |.+-+||........ .+.+. ..+-+.|+||++++.+...
T Consensus 311 ~~~-----Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~ 383 (561)
T COG5354 311 FYF-----PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKL 383 (561)
T ss_pred Eec-----CCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCccc
Confidence 222 33444557899999999987755 679999986644333 55433 3355679999998877643
Q ss_pred --c--eEEeccCCccc
Q 036585 281 --E--LSFWIPDLSKL 292 (304)
Q Consensus 281 --d--~~iw~~~~~~~ 292 (304)
| ++||++...+.
T Consensus 384 ~~Dn~i~l~~v~g~~~ 399 (561)
T COG5354 384 RVDNSIKLWDVYGAKV 399 (561)
T ss_pred ccCcceEEEEecCchh
Confidence 2 89999876654
No 259
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=1.2e-11 Score=101.01 Aligned_cols=209 Identities=7% Similarity=-0.028 Sum_probs=130.8
Q ss_pred eeEeecccCcE-EEEeeCC---CeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee
Q 036585 19 EILQSMEVGIY-LVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY 94 (304)
Q Consensus 19 ~~i~~~~~~~~-l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~ 94 (304)
..-.|+|+|+. ++..+.+ ..|.++|+.+++...... ..+......|+|||+.++.......+..|.++|+.+++.
T Consensus 191 ~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~ 269 (419)
T PRK04043 191 IFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL 269 (419)
T ss_pred EeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE
Confidence 34678999984 6654443 468889998876544333 344566788999999888766533367888889887764
Q ss_pred eeecccccccEEEEEEcCCCCEEEEccc-CC--eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecC
Q 036585 95 SRYFKGHHDRVVLLSLCSSKDCFISGSL-DR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGG 171 (304)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (304)
. .+..+........|+|||+.++..+. .+ .|.++|+.+++..+.... +
T Consensus 270 ~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~----------------------------g 320 (419)
T PRK04043 270 T-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH----------------------------G 320 (419)
T ss_pred E-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC----------------------------C
Confidence 3 34434433445689999987766553 22 577778776654322210 0
Q ss_pred CCCCceEEEEecCCcEEEEeeCC---------CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC-C-
Q 036585 172 DISDANVVKFSNDGRLMLLTTME---------GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-G- 240 (304)
Q Consensus 172 ~~~~v~~~~~~~~~~~l~~~~~d---------g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g- 240 (304)
. ....|+|+|+.++..... ..|.+.|+.++... .+.. . .......|+|||+.|+....+ +
T Consensus 321 ~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~---~-~~~~~p~~SPDG~~I~f~~~~~~~ 391 (419)
T PRK04043 321 K----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTA---N-GVNQFPRFSSDGGSIMFIKYLGNQ 391 (419)
T ss_pred C----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCC---C-CCcCCeEECCCCCEEEEEEccCCc
Confidence 1 124899999988876543 37888998887643 3331 1 223358899999987766533 2
Q ss_pred -cEEEEecCCCceeeeeeccCCCCceEE
Q 036585 241 -SVHAWSVRSGKEVASWMSFDTEPPVIK 267 (304)
Q Consensus 241 -~i~v~d~~~~~~~~~~~~~~~~i~~~~ 267 (304)
.+.+.++. +.....+....+.+...+
T Consensus 392 ~~L~~~~l~-g~~~~~l~~~~g~~~~p~ 418 (419)
T PRK04043 392 SALGIIRLN-YNKSFLFPLKVGKIQSID 418 (419)
T ss_pred EEEEEEecC-CCeeEEeecCCCccCCCC
Confidence 36677764 444444544444454433
No 260
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.53 E-value=5.4e-14 Score=125.33 Aligned_cols=190 Identities=16% Similarity=0.277 Sum_probs=155.8
Q ss_pred EeecccCcEEEEeeCCCeEEEEecCCcceeeeecc-cccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc
Q 036585 21 LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK 99 (304)
Q Consensus 21 i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~ 99 (304)
+..+|...+.+||+.||.+++|....++.+..++. ....|+.+.|+.+|+.+..+.. ||.+.+|.+. .++....+
T Consensus 2214 ~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~---dg~l~l~q~~-pk~~~s~q 2289 (2439)
T KOG1064|consen 2214 MTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDG---DGDLSLWQAS-PKPYTSWQ 2289 (2439)
T ss_pred ecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeecc---CCceeecccC-Ccceeccc
Confidence 44556788999999999999999998888777653 2378999999999999998887 9999999987 67777888
Q ss_pred cccccEEEEEEcCCCCEEEEcc---cCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCc
Q 036585 100 GHHDRVVLLSLCSSKDCFISGS---LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDA 176 (304)
Q Consensus 100 ~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 176 (304)
.|......+.|-. ..+++++ .++.+.+||..-......+. ..|.+.+
T Consensus 2290 chnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~----------------------------~~H~~ga 2339 (2439)
T KOG1064|consen 2290 CHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH----------------------------TCHDGGA 2339 (2439)
T ss_pred cCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee----------------------------eecCCCc
Confidence 8998888888875 5666654 57889999965443333222 2478899
Q ss_pred eEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeee
Q 036585 177 NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASW 256 (304)
Q Consensus 177 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 256 (304)
+++++-|..+.|++|+.+|.|++||++..+.+++++ . +. ...++++|+..|.++||++.....+..+
T Consensus 2340 T~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~---~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2340 TVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQ---A---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred eEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhh---h---------hh-hhheeeccCcccceEEEEccccchhhcC
Confidence 999999999999999999999999999988887776 1 44 5668999999999999999888777766
Q ss_pred e
Q 036585 257 M 257 (304)
Q Consensus 257 ~ 257 (304)
+
T Consensus 2407 p 2407 (2439)
T KOG1064|consen 2407 P 2407 (2439)
T ss_pred c
Confidence 4
No 261
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.53 E-value=1e-12 Score=111.56 Aligned_cols=191 Identities=16% Similarity=0.222 Sum_probs=151.2
Q ss_pred EEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccE-----EEEEEcCCCCEEEEcccCCeEEEEeCCcceee
Q 036585 63 VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRV-----VLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 137 (304)
Q Consensus 63 ~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 137 (304)
..+..+.+.++.++. ++.+.+||...+.....+. +.... .-+.++++.-++++|+.-+.|.+|+.......
T Consensus 93 ~~l~~e~k~i~l~~~---~ns~~i~d~~~~~~~~~i~-~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p 168 (967)
T KOG0974|consen 93 AKLFEENKKIALVTS---RNSLLIRDSKNSSVLSKIQ-SDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP 168 (967)
T ss_pred cchhhhcceEEEEEc---CceEEEEecccCceehhcC-CCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc
Confidence 455567788888888 9999999998877666555 33221 22334566668999999999999998622111
Q ss_pred ceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeE-EEEeCCC
Q 036585 138 GLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS-TYNVKPV 216 (304)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~-~~~~~~~ 216 (304)
. .+.+|.+.+..+.++.||.++++.+.|..+++|++.+.+... ..- +
T Consensus 169 ~-----------------------------~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~f---g 216 (967)
T KOG0974|consen 169 I-----------------------------RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGF---G 216 (967)
T ss_pred c-----------------------------eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccc---c
Confidence 1 234799999999999999999999999999999999988766 222 6
Q ss_pred CCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccC-CCCceEEeCCCCcEEEEecCc--eEEeccCCccc
Q 036585 217 SRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD-TEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKL 292 (304)
Q Consensus 217 ~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~ 292 (304)
|...+..++|.|+ .+++++.|.+.++|+. +++.+..+.+|. ..|..++..++...++|++.| +++|++.....
T Consensus 217 HsaRvw~~~~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~ 292 (967)
T KOG0974|consen 217 HSARVWACCFLPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGL 292 (967)
T ss_pred ccceeEEEEeccc--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcccc
Confidence 8999999999998 9999999999999975 455566777775 468999999999999999999 99998865543
No 262
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=5.1e-12 Score=103.92 Aligned_cols=255 Identities=12% Similarity=0.150 Sum_probs=178.1
Q ss_pred eeEeecccCcEEEEeeCCCeEEEEecCCc---------------ceeeeecccccceeEEEEccCCCeEEEEecCCCCCc
Q 036585 19 EILQSMEVGIYLVTASDDESIRLYDVTAA---------------TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES 83 (304)
Q Consensus 19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~---------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~ 83 (304)
..+.|.....|+|.|+.||.++|..+.+. ..-+++.+|...|..+.|+.+...|-+... +|.
T Consensus 18 ~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt---~Gl 94 (1189)
T KOG2041|consen 18 HCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT---SGL 94 (1189)
T ss_pred EEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC---Cce
Confidence 45788888999999999999999987642 122568899999999999998888888877 999
Q ss_pred eEEEEccCceeeeecc--cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeec-eEEEeccceeEecCCC--eEEE
Q 036585 84 LRLLSLHDNKYSRYFK--GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG-LLRVQGRPAAAYDDQG--LVFG 158 (304)
Q Consensus 84 i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~ 158 (304)
|.+|-+-.+.....+. ....-|.+++|..+|..+...-.||.|.+=.++..+... .++......+.++++. .++.
T Consensus 95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~ 174 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFK 174 (1189)
T ss_pred EEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhh
Confidence 9999998886544433 345678999999999999888888888776554332211 1111112233444443 2334
Q ss_pred ecCCCeEEEEecCC--------------------CCCceEEEE--------ecCCcEEEEeeCCCeEEEEEcCCCceeEE
Q 036585 159 YEKGPLDIFSVGGD--------------------ISDANVVKF--------SNDGRLMLLTTMEGHIHVLDSFRGTLLST 210 (304)
Q Consensus 159 ~~~~~~~~~~~~~~--------------------~~~v~~~~~--------~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 210 (304)
..++...+++.++. ...+-.+.| -|+...|+++..+|.+.+..-.+......
T Consensus 175 ~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv 254 (1189)
T KOG2041|consen 175 KANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVV 254 (1189)
T ss_pred hcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeE
Confidence 44455555544331 112334444 25778899999999988876554443333
Q ss_pred EEeCCCCCCcceEEEEcCCCcEEEEecCC---------CcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc
Q 036585 211 YNVKPVSRNSTLEASFSPEGMFVISGSGD---------GSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE 281 (304)
Q Consensus 211 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---------g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 281 (304)
+. ....+..+.|+|+|..||.++.+ +.|.+|.. -|+.+..++.....|++++|-..|-.++.+-..
T Consensus 255 ~d----tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~Avds 329 (1189)
T KOG2041|consen 255 VD----TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIAVDS 329 (1189)
T ss_pred Ee----cccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEEecc
Confidence 43 34678889999999999998754 25666653 577788888888899999998877666655443
No 263
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.52 E-value=2.2e-12 Score=94.82 Aligned_cols=217 Identities=15% Similarity=0.098 Sum_probs=151.6
Q ss_pred EEEEeeCCCeEEEEecCCcceeeeeccc------ccceeEEEEccCCCeEEEEecCCCCCceEEEEccCc--eeeeeccc
Q 036585 29 YLVTASDDESIRLYDVTAATCLKTINSK------KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN--KYSRYFKG 100 (304)
Q Consensus 29 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~--~~~~~~~~ 100 (304)
.++-+-.+|.|.++..........+++- .....++.|++.+..++++-. +|.+.+-+.... +.++.++.
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s---~G~~~~v~~t~~~le~vq~wk~ 163 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDS---RGSISGVYETEMVLEKVQTWKV 163 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcC---CCcEEEEecceeeeeecccccc
Confidence 5566677788888876644433333321 113557889999999999888 888886655444 34457889
Q ss_pred ccccEEEEEEcC-CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEE
Q 036585 101 HHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVV 179 (304)
Q Consensus 101 ~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 179 (304)
|.-+++.+.|+. +.+.+++|+.|+.+..||+|... ...+. +..-|...|.++
T Consensus 164 He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~i~~--------------------------n~kvH~~GV~SI 216 (339)
T KOG0280|consen 164 HEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TFIWH--------------------------NSKVHTSGVVSI 216 (339)
T ss_pred cceeeeeeecccCCCceEEecCCCceEEEEEecCCc-ceeee--------------------------cceeeecceEEE
Confidence 999999999985 55789999999999999999433 11111 012366788888
Q ss_pred EEec-CCcEEEEeeCCCeEEEEEcC-CCceeEEEEeCCCCCCcceEEEEcCC--CcEEEEecCCCcEEEEecCCCce---
Q 036585 180 KFSN-DGRLMLLTTMEGHIHVLDSF-RGTLLSTYNVKPVSRNSTLEASFSPE--GMFVISGSGDGSVHAWSVRSGKE--- 252 (304)
Q Consensus 180 ~~~~-~~~~l~~~~~dg~i~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~v~d~~~~~~--- 252 (304)
.-+| .+.++++|+.|-.|++||.+ -++++..-. ..+.|..+.++|. +..|+++..+| .+|-+...+..
T Consensus 217 ~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~----v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~ 291 (339)
T KOG0280|consen 217 YSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK----VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQ 291 (339)
T ss_pred ecCCCCCceEEEeccccceeeeehhcccCccccCc----cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchh
Confidence 8876 57799999999999999998 466666554 5589999999994 34455555555 67777655322
Q ss_pred --eeeeeccCCCCceEEeCCCCcEEEEecC
Q 036585 253 --VASWMSFDTEPPVIKWAPGSLMFVTGSS 280 (304)
Q Consensus 253 --~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 280 (304)
....+.|.+-...-.|..-...|+|++.
T Consensus 292 ~~~~s~~~hdSl~YG~DWd~~~~~lATCsF 321 (339)
T KOG0280|consen 292 IVLPSDKIHDSLCYGGDWDSKDSFLATCSF 321 (339)
T ss_pred eeeeccccccceeeccccccccceeeeeec
Confidence 3334566666666667555567888663
No 264
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.51 E-value=1.4e-10 Score=88.16 Aligned_cols=236 Identities=11% Similarity=0.170 Sum_probs=152.6
Q ss_pred CCeEEEEecCCcc--e-eeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccC--ceeee--ecccccccEEEE
Q 036585 36 DESIRLYDVTAAT--C-LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD--NKYSR--YFKGHHDRVVLL 108 (304)
Q Consensus 36 d~~i~vw~~~~~~--~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~--~~~~~--~~~~~~~~v~~~ 108 (304)
+.-|.+|++.+.. . ...+-.....++-|+|+|+.+.|.++...+.+|.|.-|.+.. |+... .......+-..+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 3459999987322 1 112223556788999999999999998865578888887765 44321 111122334789
Q ss_pred EEcCCCCEEEEccc-CCeEEEEeCCcc-eeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCc
Q 036585 109 SLCSSKDCFISGSL-DRTVLLWDQRAE-KCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGR 186 (304)
Q Consensus 109 ~~~~~~~~l~~~~~-dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 186 (304)
++++++++++++.. -|.|.++-++.. ............. .+ . ..+....-+....+.|+++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g-------------~~-p---~~rQ~~~h~H~a~~tP~~~ 157 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTG-------------SG-P---HERQESPHVHSANFTPDGR 157 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCC-------------CC-C---CccccCCccceeeeCCCCC
Confidence 99999999888864 578999988653 3322211100000 00 0 0001122377889999999
Q ss_pred EEEEeeC-CCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEec-CCCcEEEEecCCC-ceeeeeecc----
Q 036585 187 LMLLTTM-EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS-GDGSVHAWSVRSG-KEVASWMSF---- 259 (304)
Q Consensus 187 ~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~v~d~~~~-~~~~~~~~~---- 259 (304)
+|++... .-+|.+|++..++....-...-.......-+.|+|++++.+..+ -+++|.+|..... ..+..++.+
T Consensus 158 ~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP 237 (346)
T COG2706 158 YLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLP 237 (346)
T ss_pred EEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCc
Confidence 9888754 23799999998776554332223455667799999999988776 4889999998763 223333221
Q ss_pred -----CCCCceEEeCCCCcEEEEecCc---eEEeccC
Q 036585 260 -----DTEPPVIKWAPGSLMFVTGSSE---LSFWIPD 288 (304)
Q Consensus 260 -----~~~i~~~~~~~~~~~l~s~~~d---~~iw~~~ 288 (304)
......|..+|||++|+++... |.++.++
T Consensus 238 ~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~ 274 (346)
T COG2706 238 EDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD 274 (346)
T ss_pred cccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 2345678899999999988655 6666543
No 265
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.50 E-value=6.2e-10 Score=85.33 Aligned_cols=219 Identities=12% Similarity=0.086 Sum_probs=142.3
Q ss_pred eEeecc-cCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEc-cCCCeEEEEecCCCCCceEEEEccCceeeee
Q 036585 20 ILQSME-VGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFT-SHPTTVIYSSKNGWDESLRLLSLHDNKYSRY 97 (304)
Q Consensus 20 ~i~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~ 97 (304)
.+.+.+ .+.++++--..+.|..|+..+++... +.... ...+++. ++ ..++.+. .+.+.++|..+++....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~----~~~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVAD----SGGIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEE----TTCEEEEETTTTEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEE----cCceEEEecCCCcEEEE
Confidence 445665 77888888788999999988765533 22222 6677777 55 4555555 44556669988864433
Q ss_pred ccc-----ccccEEEEEEcCCCCEEEEcccC--------CeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCe
Q 036585 98 FKG-----HHDRVVLLSLCSSKDCFISGSLD--------RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPL 164 (304)
Q Consensus 98 ~~~-----~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (304)
... .......+++.|+|++.++.... |.+..++.. ++......
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~----------------------- 131 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD----------------------- 131 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-----------------------
T ss_pred eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-----------------------
Confidence 332 33467899999999977765433 557777766 33322222
Q ss_pred EEEEecCCCCCceEEEEecCCcEEE-EeeCCCeEEEEEcCCCce--e--EEEEeCCCCCCcceEEEEcCCCcEEEEecCC
Q 036585 165 DIFSVGGDISDANVVKFSNDGRLML-LTTMEGHIHVLDSFRGTL--L--STYNVKPVSRNSTLEASFSPEGMFVISGSGD 239 (304)
Q Consensus 165 ~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~~d~~~~~~--~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 239 (304)
.....+.++|+|+++.|+ +-+..+.|..|++..... . ..+.......+..-.++++.+|++.++....
T Consensus 132 -------~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~ 204 (246)
T PF08450_consen 132 -------GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG 204 (246)
T ss_dssp -------EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT
T ss_pred -------CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC
Confidence 113457899999998776 456788999999864322 1 2222111222347789999999988877778
Q ss_pred CcEEEEecCCCceeeeeeccCCCCceEEe-CCCCcEEEEe
Q 036585 240 GSVHAWSVRSGKEVASWMSFDTEPPVIKW-APGSLMFVTG 278 (304)
Q Consensus 240 g~i~v~d~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~s~ 278 (304)
+.|.++|.+ ++.+..+......+++++| .++.+.|+..
T Consensus 205 ~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 205 GRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp TEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred CEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 899999976 8888888766568999999 4665555443
No 266
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.50 E-value=3e-11 Score=94.87 Aligned_cols=216 Identities=15% Similarity=0.178 Sum_probs=157.6
Q ss_pred ecccCcEEEEeeCCCeEEEEecCCcceeeeec-c---c---c-----cceeEEE-Ecc-CCCeEEEEecCCCCCceEEEE
Q 036585 23 SMEVGIYLVTASDDESIRLYDVTAATCLKTIN-S---K---K-----YGVDLVC-FTS-HPTTVIYSSKNGWDESLRLLS 88 (304)
Q Consensus 23 ~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~---~---~-----~~v~~~~-~~~-~~~~l~~~~~~~~d~~i~vwd 88 (304)
...||+.++.. .-|.|.+||.++.++.. +. + . . .+..-+. |++ +|.+++..+ .|...+.+
T Consensus 274 ~nsDGkrIvFq-~~GdIylydP~td~lek-ldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS----RGkaFi~~ 347 (668)
T COG4946 274 ANSDGKRIVFQ-NAGDIYLYDPETDSLEK-LDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS----RGKAFIMR 347 (668)
T ss_pred cCCCCcEEEEe-cCCcEEEeCCCcCccee-eecCCccccccccccccCHHHhhhhhccCCCcEEEEEe----cCcEEEEC
Confidence 34568777654 34789999987654322 11 0 0 0 1111222 333 678888888 78888888
Q ss_pred ccCceeeeecccccccEEEEEEcCCCCEEEEcccCC-eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEE
Q 036585 89 LHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDR-TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIF 167 (304)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (304)
...+-.++. +|.+.|.-..+..+++-++.|..|| .+-++|.++++.....
T Consensus 348 ~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e--------------------------- 398 (668)
T COG4946 348 PWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE--------------------------- 398 (668)
T ss_pred CCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee---------------------------
Confidence 766654432 4677788888888888899999999 8999999887654332
Q ss_pred EecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCC----cEE
Q 036585 168 SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG----SVH 243 (304)
Q Consensus 168 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg----~i~ 243 (304)
..-+.|.++..+|+|++++++.....|.++|+.+++....-+ ...+-|+.+.|+|+++++|-+--+| .|+
T Consensus 399 ---~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idk---S~~~lItdf~~~~nsr~iAYafP~gy~tq~Ik 472 (668)
T COG4946 399 ---KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDK---SEYGLITDFDWHPNSRWIAYAFPEGYYTQSIK 472 (668)
T ss_pred ---CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecc---cccceeEEEEEcCCceeEEEecCcceeeeeEE
Confidence 344678999999999999999999999999999998765544 4667899999999999999887665 699
Q ss_pred EEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecC
Q 036585 244 AWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSS 280 (304)
Q Consensus 244 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 280 (304)
++|+.+++.... ....+.=.+-+|.||+++|.--+.
T Consensus 473 lydm~~~Kiy~v-TT~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 473 LYDMDGGKIYDV-TTPTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred EEecCCCeEEEe-cCCcccccCcccCCCCcEEEEEec
Confidence 999988776443 333344456789999998876553
No 267
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.50 E-value=3.1e-11 Score=87.90 Aligned_cols=234 Identities=11% Similarity=-0.012 Sum_probs=156.5
Q ss_pred CcEEEEeeCCCeEEEEecCCccee-eeecccccceeEEEEccC-CCeEEEEecCCCCCceEEEEccCceeeeecccccc-
Q 036585 27 GIYLVTASDDESIRLYDVTAATCL-KTINSKKYGVDLVCFTSH-PTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHD- 103 (304)
Q Consensus 27 ~~~l~~~~~d~~i~vw~~~~~~~~-~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~- 103 (304)
..+||.|+..|...+|...+.+.. +....|...|.-+.=..+ ...+..++. |.++++.+++.+..-... |..
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sn---dht~k~~~~~~~s~~~~~--h~~~ 158 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASN---DHTGKTMVVSGDSNKFAV--HNQN 158 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccC---CcceeEEEEecCccccee--eccc
Confidence 458999999999999999866543 333344443332221112 223555555 889999988755332222 333
Q ss_pred -cEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEe
Q 036585 104 -RVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFS 182 (304)
Q Consensus 104 -~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 182 (304)
.+.++.++++++++++.+....|..|.+........-.. .......-.+..|+
T Consensus 159 ~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~--------------------------~a~t~D~gF~~S~s 212 (344)
T KOG4532|consen 159 LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIY--------------------------EAPTSDHGFYNSFS 212 (344)
T ss_pred cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeE--------------------------ecccCCCceeeeec
Confidence 378899999999999999999999998875433221100 01122334567899
Q ss_pred cCCcEEEEeeCCCeEEEEEcCCCceeEEEE--eCCCCCCcceEEEEcCCCc--EEEEecCCCcEEEEecCCCceeeeee-
Q 036585 183 NDGRLMLLTTMEGHIHVLDSFRGTLLSTYN--VKPVSRNSTLEASFSPEGM--FVISGSGDGSVHAWSVRSGKEVASWM- 257 (304)
Q Consensus 183 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~~~~i~~~~~s~~~~--~l~~~~~dg~i~v~d~~~~~~~~~~~- 257 (304)
.....+|++..||++.+||++......... ..+.|.+.+..+.|+|.|. +|+..-.-+.+++-|+++++..+.+.
T Consensus 213 ~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i 292 (344)
T KOG4532|consen 213 ENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVI 292 (344)
T ss_pred cCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEec
Confidence 999999999999999999998755433222 3345889999999998663 45555556789999999987654442
Q ss_pred ------ccCC-CCceEEeCCCCcEEEEecCc-eEEeccCCcc
Q 036585 258 ------SFDT-EPPVIKWAPGSLMFVTGSSE-LSFWIPDLSK 291 (304)
Q Consensus 258 ------~~~~-~i~~~~~~~~~~~l~s~~~d-~~iw~~~~~~ 291 (304)
.|.. .|..-.|+.++.-+.+.+++ +.=|.+..+.
T Consensus 293 ~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni~srs 334 (344)
T KOG4532|consen 293 PDDVERKHNTQHIFGTNFNNENESNDVKNELQGAEYNILSRS 334 (344)
T ss_pred CccccccccccccccccccCCCcccccccchhhheeeccccc
Confidence 2333 37888888888877777776 5556554443
No 268
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.50 E-value=1.6e-10 Score=104.51 Aligned_cols=254 Identities=11% Similarity=0.124 Sum_probs=158.8
Q ss_pred eEeecc-cCcEEEEeeCCCeEEEEecCCcceeeeecc-c-------------ccceeEEEEccCCCeEEEEecCCCCCce
Q 036585 20 ILQSME-VGIYLVTASDDESIRLYDVTAATCLKTINS-K-------------KYGVDLVCFTSHPTTVIYSSKNGWDESL 84 (304)
Q Consensus 20 ~i~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-~-------------~~~v~~~~~~~~~~~l~~~~~~~~d~~i 84 (304)
-+.+.+ +|+++++-+.++.|+++|.. ++.+..+.+ . -.....+++.+++..|+++... .+.|
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~--n~~I 648 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE--NHAL 648 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC--CceE
Confidence 355554 46677777788899999975 444433322 1 1235789999988877776542 6789
Q ss_pred EEEEccCceeeeecccc-----------------cccEEEEEEcC-CCCEEEEcccCCeEEEEeCCcceeeceEEEeccc
Q 036585 85 RLLSLHDNKYSRYFKGH-----------------HDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146 (304)
Q Consensus 85 ~vwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 146 (304)
+++|+.++. +.++.+- -.....++++| ++..+++.+.++.|++||..++... .+..
T Consensus 649 r~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G---- 722 (1057)
T PLN02919 649 REIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSG---- 722 (1057)
T ss_pred EEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEec----
Confidence 999987764 2222110 11236789999 5666677778899999998776432 1111
Q ss_pred eeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEE-EeeCCCeEEEEEcCCCceeEEEEeC-----------
Q 036585 147 AAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLML-LTTMEGHIHVLDSFRGTLLSTYNVK----------- 214 (304)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~~d~~~~~~~~~~~~~----------- 214 (304)
++..... .+... ....-.....++++|+++.|+ +-+.++.|++||+.++.........
T Consensus 723 ------~G~~~~~-~g~~~---~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG 792 (1057)
T PLN02919 723 ------DGYERNL-NGSSG---TSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFG 792 (1057)
T ss_pred ------CCccccC-CCCcc---ccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCccccccc
Confidence 1100000 00000 001123467799999998555 4556789999999876532211000
Q ss_pred --C-----CCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeee-------------ccCCCCceEEeCCCCcE
Q 036585 215 --P-----VSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWM-------------SFDTEPPVIKWAPGSLM 274 (304)
Q Consensus 215 --~-----~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-------------~~~~~i~~~~~~~~~~~ 274 (304)
. ..-.....++++++|+.+++-..++.|++||..++....... +.-.....++++++|+.
T Consensus 793 ~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~l 872 (1057)
T PLN02919 793 DHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRL 872 (1057)
T ss_pred CCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCE
Confidence 0 001134578999999988888889999999998765532211 11235788999999987
Q ss_pred EEEecCc--eEEeccCCccc
Q 036585 275 FVTGSSE--LSFWIPDLSKL 292 (304)
Q Consensus 275 l~s~~~d--~~iw~~~~~~~ 292 (304)
+++-+.+ |++|+.+..++
T Consensus 873 yVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 873 FVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEEECCCCEEEEEECCCCcc
Confidence 7776666 99998876544
No 269
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.49 E-value=2.9e-12 Score=96.32 Aligned_cols=235 Identities=14% Similarity=0.228 Sum_probs=147.8
Q ss_pred ccceeEEEEccCCCeEEEEecCCCCCceEEEEccCce-----eeeecccc------------cccEEEEEEcCCCC--EE
Q 036585 57 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK-----YSRYFKGH------------HDRVVLLSLCSSKD--CF 117 (304)
Q Consensus 57 ~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~-----~~~~~~~~------------~~~v~~~~~~~~~~--~l 117 (304)
..-+.++.|...|.+|++|.. +|.|.++.-.... ....++.| ...|..+.|.++++ .+
T Consensus 25 adiis~vef~~~Ge~LatGdk---gGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F 101 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDK---GGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF 101 (433)
T ss_pred hcceeeEEeecccceEeecCC---CCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence 346889999999999999998 8999998654322 22233333 34678899988654 67
Q ss_pred EEcccCCeEEEEeCCcceeece---EEEeccc-------eeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcE
Q 036585 118 ISGSLDRTVLLWDQRAEKCQGL---LRVQGRP-------AAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRL 187 (304)
Q Consensus 118 ~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 187 (304)
+..+.|.+|++|.+........ +.....+ .....+....+ .....+++ -..|..-|+++.++.|.+.
T Consensus 102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~v--ea~prRv~-aNaHtyhiNSIS~NsD~Et 178 (433)
T KOG1354|consen 102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEV--EASPRRVY-ANAHTYHINSISVNSDKET 178 (433)
T ss_pred EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeecccccee--eeeeeeec-cccceeEeeeeeecCccce
Confidence 7888999999999865433220 0000000 00000000000 00111111 1357788999999999997
Q ss_pred EEEeeCCCeEEEEEcCCCceeEEE-EeCCCC----CCcceEEEEcCC-CcEEEEecCCCcEEEEecCCCce------eee
Q 036585 188 MLLTTMEGHIHVLDSFRGTLLSTY-NVKPVS----RNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGKE------VAS 255 (304)
Q Consensus 188 l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~----~~~i~~~~~s~~-~~~l~~~~~dg~i~v~d~~~~~~------~~~ 255 (304)
++++ .|=.|.+|++.--.....+ ...+.. ..-|++..|+|. .+.++-.+..|+|++-|++...+ +..
T Consensus 179 ~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE 257 (433)
T KOG1354|consen 179 FLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE 257 (433)
T ss_pred Eeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhc
Confidence 7765 5678999998643322222 222111 235888999994 45677777899999999984321 111
Q ss_pred ----------eeccCCCCceEEeCCCCcEEEEecCc-eEEeccCCc--cccccccC
Q 036585 256 ----------WMSFDTEPPVIKWAPGSLMFVTGSSE-LSFWIPDLS--KLGAYVGR 298 (304)
Q Consensus 256 ----------~~~~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~~~~--~~~~~~~~ 298 (304)
+..--..|..+.|+++|+++++-+.- +++||++++ .+..+.-|
T Consensus 258 epedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh 313 (433)
T KOG1354|consen 258 EPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVH 313 (433)
T ss_pred cccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeeh
Confidence 11223568899999999999988877 999999654 34444433
No 270
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.47 E-value=1.1e-10 Score=95.36 Aligned_cols=245 Identities=13% Similarity=0.077 Sum_probs=143.1
Q ss_pred cCcEEEEeeCCCeEEEEecCCcceeeeecccccceeE-EEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccccccc
Q 036585 26 VGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDL-VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDR 104 (304)
Q Consensus 26 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 104 (304)
++..++.++.++.+..+|.++|+.+....... .+.+ ... .+..++.+.. ++.++.||.++++.+..+......
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v--~~~~v~v~~~---~g~l~a~d~~tG~~~W~~~~~~~~ 177 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV--ANGLVVVRTN---DGRLTALDAATGERLWTYSRVTPA 177 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE--ECCEEEEECC---CCeEEEEEcCCCceeeEEccCCCc
Confidence 35566777777788888877777765544322 1211 111 3456666666 899999999998876665432221
Q ss_pred EE-----EEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecc-------------ceeEecCCCeEEEecCCCeEE
Q 036585 105 VV-----LLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-------------PAAAYDDQGLVFGYEKGPLDI 166 (304)
Q Consensus 105 v~-----~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~ 166 (304)
+. +... .+..++.+..++.+..+|.++++.......... .......+..++...++.+..
T Consensus 178 ~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a 255 (377)
T TIGR03300 178 LTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAA 255 (377)
T ss_pred eeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEE
Confidence 11 1111 124677888889999999998877654432110 011122222333333444444
Q ss_pred EEecCC-------CCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC
Q 036585 167 FSVGGD-------ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD 239 (304)
Q Consensus 167 ~~~~~~-------~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 239 (304)
++.... ....... ...+..+++++.+|.++.+|..+++.+...... .......... .+..|++++.+
T Consensus 256 ~d~~tG~~~W~~~~~~~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~--~~~~~ssp~i--~g~~l~~~~~~ 329 (377)
T TIGR03300 256 LDLRSGRVLWKRDASSYQGP--AVDDNRLYVTDADGVVVALDRRSGSELWKNDEL--KYRQLTAPAV--VGGYLVVGDFE 329 (377)
T ss_pred EECCCCcEEEeeccCCccCc--eEeCCEEEEECCCCeEEEEECCCCcEEEccccc--cCCccccCEE--ECCEEEEEeCC
Confidence 443211 0111111 224667888889999999999999877665311 1111222222 46688999999
Q ss_pred CcEEEEecCCCceeeeeeccCCCCc-eEEeCCCCcEEEEecCceEEec
Q 036585 240 GSVHAWSVRSGKEVASWMSFDTEPP-VIKWAPGSLMFVTGSSELSFWI 286 (304)
Q Consensus 240 g~i~v~d~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~s~~~d~~iw~ 286 (304)
|.|+++|..+++.+.++..+...+. +..+. ++ .|+.++.|.+|+.
T Consensus 330 G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~-~l~v~~~dG~l~~ 375 (377)
T TIGR03300 330 GYLHWLSREDGSFVARLKTDGSGIASPPVVV-GD-GLLVQTRDGDLYA 375 (377)
T ss_pred CEEEEEECCCCCEEEEEEcCCCccccCCEEE-CC-EEEEEeCCceEEE
Confidence 9999999999999988876654432 22332 33 3666666655543
No 271
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.45 E-value=2.8e-11 Score=89.20 Aligned_cols=223 Identities=12% Similarity=0.096 Sum_probs=145.4
Q ss_pred CCCeEEEEecCCcceee--eec-ccccceeEEEEcc---CCC-eEEEEecCCCCCceEEEEccCceeeeeccccc-----
Q 036585 35 DDESIRLYDVTAATCLK--TIN-SKKYGVDLVCFTS---HPT-TVIYSSKNGWDESLRLLSLHDNKYSRYFKGHH----- 102 (304)
Q Consensus 35 ~d~~i~vw~~~~~~~~~--~~~-~~~~~v~~~~~~~---~~~-~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~----- 102 (304)
..|.+.+|++.+.+... +++ .....+..+.|.. ++. .++-+-. +|.|.++.....+....+.+-.
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a---~G~i~~~r~~~~~ss~~L~~ls~~ki~ 120 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHA---RGQIQLYRNDEDESSVHLRGLSSKKIS 120 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccc---cceEEEEeeccceeeeeecccchhhhh
Confidence 34678889887765443 222 2334667777763 344 3444444 8999999876554433333221
Q ss_pred -ccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEE
Q 036585 103 -DRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKF 181 (304)
Q Consensus 103 -~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 181 (304)
....++.|++.+..++++..+|.+.+-+.......... ..+.|+.+.....|
T Consensus 121 ~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq---------------------------~wk~He~E~Wta~f 173 (339)
T KOG0280|consen 121 VVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQ---------------------------TWKVHEFEAWTAKF 173 (339)
T ss_pred heeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecc---------------------------cccccceeeeeeec
Confidence 13567889998989999988898885554433322211 11245556666777
Q ss_pred ec-CCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcC-CCcEEEEecCCCcEEEEecCC-Cceeeeeec
Q 036585 182 SN-DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-EGMFVISGSGDGSVHAWSVRS-GKEVASWMS 258 (304)
Q Consensus 182 ~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~ 258 (304)
+. +.+.+.+|+.|+.+..||++..+ ...+.....|...|.++.-+| .+.++++|+.|-.|++||.++ ++++..-.
T Consensus 174 ~~~~pnlvytGgDD~~l~~~D~R~p~-~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~- 251 (339)
T KOG0280|consen 174 SDKEPNLVYTGGDDGSLSCWDIRIPK-TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK- 251 (339)
T ss_pred ccCCCceEEecCCCceEEEEEecCCc-ceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-
Confidence 65 34688999999999999999333 223332335788899998887 578999999999999999985 56655443
Q ss_pred cCCCCceEEeCCCC--cEEEEecCc-eEEeccCC
Q 036585 259 FDTEPPVIKWAPGS--LMFVTGSSE-LSFWIPDL 289 (304)
Q Consensus 259 ~~~~i~~~~~~~~~--~~l~s~~~d-~~iw~~~~ 289 (304)
-.+.|+.+.++|.- +.|+++-.+ .+|-+.+.
T Consensus 252 v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~ 285 (339)
T KOG0280|consen 252 VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSD 285 (339)
T ss_pred cccceEEEEecchhhhHHHHHHHhcCceEEEecc
Confidence 44789999999953 344444444 55555443
No 272
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=2.8e-13 Score=108.10 Aligned_cols=199 Identities=15% Similarity=0.255 Sum_probs=146.8
Q ss_pred eeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccC-------ceeeeecccccccEEEEEEcCCCCEEEEccc
Q 036585 50 LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-------NKYSRYFKGHHDRVVLLSLCSSKDCFISGSL 122 (304)
Q Consensus 50 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 122 (304)
+..+.+|...|..++--.+.+.+++++. |.+|++|.++. ..+..+++.|+.+|..+.|..+.++++++
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASk---DKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc-- 802 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASK---DKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC-- 802 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccC---CceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--
Confidence 3456789888988887778888999998 99999999864 23567788999999999999988887765
Q ss_pred CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEec--CCcEEEEe-eCCCeEEE
Q 036585 123 DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSN--DGRLMLLT-TMEGHIHV 199 (304)
Q Consensus 123 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~-~~dg~i~~ 199 (304)
||.|.+||.--++....+.... ..+.+..+..-+ +...+..+ +...+|++
T Consensus 803 D~giHlWDPFigr~Laq~~dap---------------------------k~~a~~~ikcl~nv~~~iliAgcsaeSTVKl 855 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLLAQMEDAP---------------------------KEGAGGNIKCLENVDRHILIAGCSAESTVKL 855 (1034)
T ss_pred cCcceeecccccchhHhhhcCc---------------------------ccCCCceeEecccCcchheeeeccchhhhee
Confidence 7889999987766655332111 112233333333 33444444 67889999
Q ss_pred EEcCCCceeEEEEeC--CCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEE
Q 036585 200 LDSFRGTLLSTYNVK--PVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVT 277 (304)
Q Consensus 200 ~d~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 277 (304)
+|.+..+....++.. ++....+.+++..|.|++++++-.+|+|.+.|.++|+.+..++........++ .|..+.|+.
T Consensus 856 ~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~ 934 (1034)
T KOG4190|consen 856 FDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQ 934 (1034)
T ss_pred eecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHh
Confidence 999999888887753 44556788999999999999999999999999999998887765554444444 344445554
Q ss_pred ecCc
Q 036585 278 GSSE 281 (304)
Q Consensus 278 ~~~d 281 (304)
...|
T Consensus 935 sald 938 (1034)
T KOG4190|consen 935 SALD 938 (1034)
T ss_pred hccc
Confidence 4444
No 273
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.43 E-value=1.6e-12 Score=103.86 Aligned_cols=213 Identities=16% Similarity=0.254 Sum_probs=154.4
Q ss_pred eeeecceeeEe---ecccCcEEEEeeCCCeEEEEecCC-------cceeeeecccccceeEEEEccCCCeEEEEecCCCC
Q 036585 12 VSLELSEEILQ---SMEVGIYLVTASDDESIRLYDVTA-------ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD 81 (304)
Q Consensus 12 ~~~~~~~~~i~---~~~~~~~l~~~~~d~~i~vw~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d 81 (304)
..+.+|.+.++ ...+.+-+++++.|.+|++|.++. ..+..+++.|+.+|+.+.|-.+-+.++++ |
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc-----D 803 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC-----D 803 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec-----c
Confidence 34455665544 344578899999999999999863 34667889999999999999888887776 8
Q ss_pred CceEEEEccCceeeeecc--cccccEEEEEEcC--CCCEEEEc-ccCCeEEEEeCCcceeeceEEEeccceeEecCCCeE
Q 036585 82 ESLRLLSLHDNKYSRYFK--GHHDRVVLLSLCS--SKDCFISG-SLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLV 156 (304)
Q Consensus 82 ~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~--~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (304)
+.|.+||.--++++..+. ...+.+..+...| +...++.+ +...+|+++|.+.......++.-..
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna----------- 872 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA----------- 872 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccC-----------
Confidence 999999987776655332 1112233333333 34444444 7889999999998877666553322
Q ss_pred EEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEe
Q 036585 157 FGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG 236 (304)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 236 (304)
.+....+++++..+.|++++++-.+|.|.+.|.++|+.+..+. ...-....++ .|..+.|+..
T Consensus 873 -------------~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr---pmecdllqla-apsdq~L~~s 935 (1034)
T KOG4190|consen 873 -------------PGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWR---PMECDLLQLA-APSDQALAQS 935 (1034)
T ss_pred -------------CCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCC---cccchhhhhc-CchhHHHHhh
Confidence 1344678899999999999999999999999999999888777 3444454454 4666788888
Q ss_pred cCCCcEEE-EecCCCceeeeee
Q 036585 237 SGDGSVHA-WSVRSGKEVASWM 257 (304)
Q Consensus 237 ~~dg~i~v-~d~~~~~~~~~~~ 257 (304)
..|.++.+ |..-++....+.+
T Consensus 936 aldHslaVnWhaldgimh~q~k 957 (1034)
T KOG4190|consen 936 ALDHSLAVNWHALDGIMHLQDK 957 (1034)
T ss_pred cccceeEeeehhcCCeeeeccC
Confidence 88999988 8877766554443
No 274
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.40 E-value=1e-09 Score=89.71 Aligned_cols=247 Identities=16% Similarity=0.121 Sum_probs=148.6
Q ss_pred cCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccE
Q 036585 26 VGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRV 105 (304)
Q Consensus 26 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v 105 (304)
.+..+++++.+|.+..+|..+|+.+-.............. ++..+++++. ++.+..+|..+|+.+...... +.+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~---~g~l~ald~~tG~~~W~~~~~-~~~ 137 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTE---KGEVIALDAEDGKELWRAKLS-SEV 137 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcC---CCEEEEEECCCCcEeeeeccC-cee
Confidence 4778888999999999999999988665544322222222 5677888877 999999999999877655422 222
Q ss_pred EEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccc-------eeEecCCCeEEEecCCCeEEEEecCCC-----
Q 036585 106 VLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP-------AAAYDDQGLVFGYEKGPLDIFSVGGDI----- 173 (304)
Q Consensus 106 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 173 (304)
.+.-.. .+..++.++.++.++.||.++++.+......... ......+..+++..++.+..++.....
T Consensus 138 ~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 138 LSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQ 216 (377)
T ss_pred ecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeee
Confidence 211111 2456777788999999999998877665443211 111111222233333333333321100
Q ss_pred ----C----C---ceEEEEec--CCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCC
Q 036585 174 ----S----D---ANVVKFSN--DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG 240 (304)
Q Consensus 174 ----~----~---v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 240 (304)
. . ...+.-+| .+..+++++.+|.++.||..+++.+..... .. ..... .++..++.++.+|
T Consensus 217 ~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~----~~-~~~p~--~~~~~vyv~~~~G 289 (377)
T TIGR03300 217 RVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA----SS-YQGPA--VDDNRLYVTDADG 289 (377)
T ss_pred ccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc----CC-ccCce--EeCCEEEEECCCC
Confidence 0 0 00011111 345788888899999999999987766552 11 11122 2466788888999
Q ss_pred cEEEEecCCCceeeeeeccCC-CCceEEeCCCCcEEEEecCc--eEEeccC
Q 036585 241 SVHAWSVRSGKEVASWMSFDT-EPPVIKWAPGSLMFVTGSSE--LSFWIPD 288 (304)
Q Consensus 241 ~i~v~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~s~~~d--~~iw~~~ 288 (304)
.++.+|..+++.+........ ...+... .+..+++++.+ +.+++.+
T Consensus 290 ~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 290 VVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSRE 338 (377)
T ss_pred eEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECC
Confidence 999999999987765522211 2222222 34577777766 5556554
No 275
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.40 E-value=2e-10 Score=90.37 Aligned_cols=192 Identities=13% Similarity=0.107 Sum_probs=138.6
Q ss_pred EEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccc-----------ccccEEEEE-EcC-CCCEEEEcccCCeEEEE
Q 036585 63 VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKG-----------HHDRVVLLS-LCS-SKDCFISGSLDRTVLLW 129 (304)
Q Consensus 63 ~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~-----------~~~~v~~~~-~~~-~~~~l~~~~~dg~i~iw 129 (304)
-..+.||+.++... .|.|.+||..+.+..+.--+ ...+..-+. |++ +|.+++..+. |...+.
T Consensus 272 R~~nsDGkrIvFq~----~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~ 346 (668)
T COG4946 272 RNANSDGKRIVFQN----AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIM 346 (668)
T ss_pred cccCCCCcEEEEec----CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEE
Confidence 34466898888876 78999999887543221100 001111122 343 6777777776 666666
Q ss_pred eCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCC-eEEEEEcCCCcee
Q 036585 130 DQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEG-HIHVLDSFRGTLL 208 (304)
Q Consensus 130 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~~~d~~~~~~~ 208 (304)
+...+-.++. ++...|.-..+..+++-++.|..|| .+-+||.++++..
T Consensus 347 ~~~~~~~iqv-------------------------------~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k 395 (668)
T COG4946 347 RPWDGYSIQV-------------------------------GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK 395 (668)
T ss_pred CCCCCeeEEc-------------------------------CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE
Confidence 6544433221 3445677777877888899999999 8999999887654
Q ss_pred EEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc------e
Q 036585 209 STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE------L 282 (304)
Q Consensus 209 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d------~ 282 (304)
.. . ..-+.|.++..+|+|++++.+.....|.+.|+.+++....-+...+-|+.+.|||+++++|-+--+ |
T Consensus 396 r~-e---~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~I 471 (668)
T COG4946 396 RI-E---KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSI 471 (668)
T ss_pred Ee-e---CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeE
Confidence 43 3 366889999999999999999999999999999998755555667789999999999999988655 8
Q ss_pred EEeccCCccccc
Q 036585 283 SFWIPDLSKLGA 294 (304)
Q Consensus 283 ~iw~~~~~~~~~ 294 (304)
++++.+..++-.
T Consensus 472 klydm~~~Kiy~ 483 (668)
T COG4946 472 KLYDMDGGKIYD 483 (668)
T ss_pred EEEecCCCeEEE
Confidence 999988876543
No 276
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.35 E-value=8e-12 Score=112.00 Aligned_cols=194 Identities=17% Similarity=0.218 Sum_probs=146.1
Q ss_pred cccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc-cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcc
Q 036585 56 KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK-GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAE 134 (304)
Q Consensus 56 ~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 134 (304)
+-..|.++.-+|...+.++|+. ||.+++|....++.+..++ .-...|+.+.|+.+|+.+..+..||.+.+|... .
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~---dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQ---DGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred ccCceeeecCCCCCceEEecCC---CceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence 4457888888999999999998 9999999999888777665 223789999999999999999999999999876 2
Q ss_pred eeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEe---eCCCeEEEEEcCCCceeEEE
Q 036585 135 KCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLT---TMEGHIHVLDSFRGTLLSTY 211 (304)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~~~d~~~~~~~~~~ 211 (304)
+.... .+.|......+.|-. ..++++ +.++.+.+||..-.....-+
T Consensus 2283 k~~~s-----------------------------~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v 2331 (2439)
T KOG1064|consen 2283 KPYTS-----------------------------WQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLV 2331 (2439)
T ss_pred cceec-----------------------------cccCCccccceeeee--hhhhccccCCCCCcccchhcccCccccee
Confidence 11111 123555666677754 445554 34678999996432222111
Q ss_pred EeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCC
Q 036585 212 NVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDL 289 (304)
Q Consensus 212 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~ 289 (304)
. ..|.+.++++++-|..+.|++|+.+|.|++||++..+.+..++. +. ...++++++.. ++||..+.
T Consensus 2332 ~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2332 H--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred e--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccc
Confidence 1 36999999999999999999999999999999998877766654 44 56788888887 99998864
Q ss_pred -ccccccc
Q 036585 290 -SKLGAYV 296 (304)
Q Consensus 290 -~~~~~~~ 296 (304)
..+..+.
T Consensus 2400 ~~ll~~~p 2407 (2439)
T KOG1064|consen 2400 FGLLHTFP 2407 (2439)
T ss_pred cchhhcCc
Confidence 3344443
No 277
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.34 E-value=1.6e-09 Score=96.51 Aligned_cols=221 Identities=11% Similarity=0.153 Sum_probs=147.0
Q ss_pred ccceeEEEEccCCCeEEEEecCCCCCceEEE----EccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCC
Q 036585 57 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLL----SLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQR 132 (304)
Q Consensus 57 ~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vw----d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 132 (304)
...|.++.+-++...++.+.. +|.|.+. +..+.. +.....-...|.+++||||+..|+..+.++++.+.+ +
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~---~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~ 149 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALA---SGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT-R 149 (928)
T ss_pred CCcEEEEEeccCCCcEEEEEC---CceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-c
Confidence 467999999999999999998 9999999 544432 222233457899999999999999999999988874 3
Q ss_pred cceeeceEEEec-------cceeEecCCCeEEEecCCCe----------E---EEEecCCCCCceEEEEecCCcEEEEee
Q 036585 133 AEKCQGLLRVQG-------RPAAAYDDQGLVFGYEKGPL----------D---IFSVGGDISDANVVKFSNDGRLMLLTT 192 (304)
Q Consensus 133 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~----------~---~~~~~~~~~~v~~~~~~~~~~~l~~~~ 192 (304)
+...+....... ...+-|......+-...+.. . .-.+. ....-..++|-.||++|++.+
T Consensus 150 ~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss 228 (928)
T PF04762_consen 150 DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSS 228 (928)
T ss_pred cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEE
Confidence 333333322211 11222322222221111110 0 01111 233556799999999999987
Q ss_pred C---C---CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecC---CCcEEEEecCCCceeeeee----cc
Q 036585 193 M---E---GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG---DGSVHAWSVRSGKEVASWM----SF 259 (304)
Q Consensus 193 ~---d---g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~~----~~ 259 (304)
. . ..+++|+ +.|+...+-+ ...+--.+++|-|.|++||+... ...|.+|. ++|-....+. ..
T Consensus 229 ~~~~~~~~R~iRVy~-ReG~L~stSE---~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~ 303 (928)
T PF04762_consen 229 VEPETGSRRVIRVYS-REGELQSTSE---PVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPE 303 (928)
T ss_pred EEcCCCceeEEEEEC-CCceEEeccc---cCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCC
Confidence 5 2 4799999 4577655554 23344456899999999998854 34677887 5665544442 34
Q ss_pred CCCCceEEeCCCCcEEEEecCc-eEEeccC
Q 036585 260 DTEPPVIKWAPGSLMFVTGSSE-LSFWIPD 288 (304)
Q Consensus 260 ~~~i~~~~~~~~~~~l~s~~~d-~~iw~~~ 288 (304)
...|..++|++|+..||..-.| +.+|...
T Consensus 304 ~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~ 333 (928)
T PF04762_consen 304 EEKVIELAWNSDSEILAVWLEDRVQLWTRS 333 (928)
T ss_pred CceeeEEEECCCCCEEEEEecCCceEEEee
Confidence 5678999999999999998888 9999643
No 278
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.34 E-value=1.2e-09 Score=86.68 Aligned_cols=263 Identities=11% Similarity=0.122 Sum_probs=171.6
Q ss_pred ceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCC------------CCCce
Q 036585 17 SEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG------------WDESL 84 (304)
Q Consensus 17 ~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~------------~d~~i 84 (304)
....+.++|.|.+|++....+ |.+|.......+..+.. ..|..+.|+|.+++|.+-.... .++.+
T Consensus 34 p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~~--~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~ 110 (561)
T COG5354 34 PVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFRH--PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNV 110 (561)
T ss_pred chhheeecCcchheehhhccc-eEEccccchhheeeeec--CCceecccCcccceeeeeccCCccChhhccCCccccCce
Confidence 344578899999999998876 99999887665555543 2699999999999999987632 23469
Q ss_pred EEEEccCceeeeeccccccc--EE-EEEEcCCCCEEEEcccCCeEEEEeCCccee----eceEEEeccceeEecCCC---
Q 036585 85 RLLSLHDNKYSRYFKGHHDR--VV-LLSLCSSKDCFISGSLDRTVLLWDQRAEKC----QGLLRVQGRPAAAYDDQG--- 154 (304)
Q Consensus 85 ~vwd~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~--- 154 (304)
.+||..++..+..+.....+ .+ -+.|+-+.++++-. ....++|+++ +... ...++..+...+.++|.+
T Consensus 111 ~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~ 188 (561)
T COG5354 111 FVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHD 188 (561)
T ss_pred eEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCc
Confidence 99999999999988866655 55 67888888776655 3356899986 3221 122233333344444442
Q ss_pred -eEE-----EecCCCeEEEEecCCC---------CCceEEEEecCCcEEEEee-----------CCCeEEEEEcCCCcee
Q 036585 155 -LVF-----GYEKGPLDIFSVGGDI---------SDANVVKFSNDGRLMLLTT-----------MEGHIHVLDSFRGTLL 208 (304)
Q Consensus 155 -~~~-----~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~-----------~dg~i~~~d~~~~~~~ 208 (304)
+.+ ......+.++.+.... ..=..+.|.+.|+++++-- .+..+++++++.....
T Consensus 189 ~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~ 268 (561)
T COG5354 189 ELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIP 268 (561)
T ss_pred eEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccc
Confidence 111 1112334444443211 1123478888898776521 1245788887633222
Q ss_pred EEEEeCCCCCCcceEEEEcCCCcEEEEe--cCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc-----
Q 036585 209 STYNVKPVSRNSTLEASFSPEGMFVISG--SGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE----- 281 (304)
Q Consensus 209 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~--~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d----- 281 (304)
... ...++|...+|.|.++.+++. -.+-.+.++|++.. .... .....=+.+.|+|.+++++.++-|
T Consensus 269 V~~----~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~--~Pe~~rNT~~fsp~~r~il~agF~nl~gn 341 (561)
T COG5354 269 VEK----DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFY--FPEQKRNTIFFSPHERYILFAGFDNLQGN 341 (561)
T ss_pred eec----cccccceeeeecccCCceeEEecccccceeecccccc-eEEe--cCCcccccccccCcccEEEEecCCccccc
Confidence 221 357899999999988876654 46778999998765 3322 344455677889988888887766
Q ss_pred eEEeccCCcc
Q 036585 282 LSFWIPDLSK 291 (304)
Q Consensus 282 ~~iw~~~~~~ 291 (304)
+.+|+...+.
T Consensus 342 i~i~~~~~rf 351 (561)
T COG5354 342 IEIFDPAGRF 351 (561)
T ss_pred eEEeccCCce
Confidence 7777775543
No 279
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=3.3e-09 Score=85.07 Aligned_cols=241 Identities=10% Similarity=0.192 Sum_probs=143.0
Q ss_pred eEEEEecCCcceeeeeccc---ccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCC
Q 036585 38 SIRLYDVTAATCLKTINSK---KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSK 114 (304)
Q Consensus 38 ~i~vw~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 114 (304)
.+.+|+............+ ..++...+++++|++++.+. +..++|++..++..+...... .++++.|+|-+
T Consensus 12 ~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~----~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g 85 (566)
T KOG2315|consen 12 GFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSD----NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKG 85 (566)
T ss_pred eeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEc----CCeEEEEEccCCcEEEEeccc--eeeeeeecccc
Confidence 4788876543332222222 34577889999999998887 889999999888644444322 78999999999
Q ss_pred CEEEEcc-----c-----CCeEEEEeCCcceeeceEEEeccc--eeEecCCCeEE-EecCCCeEEEEec--------CCC
Q 036585 115 DCFISGS-----L-----DRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVF-GYEKGPLDIFSVG--------GDI 173 (304)
Q Consensus 115 ~~l~~~~-----~-----dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~--------~~~ 173 (304)
.+|.+-- . .-.+++|+++++.....+...... ...|+.+..+. -...+.+.++++. -|.
T Consensus 86 ~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~ 165 (566)
T KOG2315|consen 86 NYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSV 165 (566)
T ss_pred cccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeec
Confidence 9887621 1 235789999985544433321111 22232222111 0111111222111 122
Q ss_pred CCceE----------------------------------------------------EEEecCCcE-EEEee--CC----
Q 036585 174 SDANV----------------------------------------------------VKFSNDGRL-MLLTT--ME---- 194 (304)
Q Consensus 174 ~~v~~----------------------------------------------------~~~~~~~~~-l~~~~--~d---- 194 (304)
..++. +.|++-|.- |+.++ .|
T Consensus 166 ~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~ 245 (566)
T KOG2315|consen 166 SGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNA 245 (566)
T ss_pred cceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCc
Confidence 23333 334443332 11111 11
Q ss_pred -----CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEe--cCCCcEEEEecCCCceeeeeeccCCCCceEE
Q 036585 195 -----GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG--SGDGSVHAWSVRSGKEVASWMSFDTEPPVIK 267 (304)
Q Consensus 195 -----g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~--~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~ 267 (304)
.+++++++........+ ...++|.++.|+|+++-++++ -.=-.+.|||++ ++++..+ ..++-+++-
T Consensus 246 SYYGEq~Lyll~t~g~s~~V~L----~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~ 318 (566)
T KOG2315|consen 246 SYYGEQTLYLLATQGESVSVPL----LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAF 318 (566)
T ss_pred cccccceEEEEEecCceEEEec----CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceE
Confidence 24555555422222222 257899999999999876654 345679999974 5666555 467789999
Q ss_pred eCCCCcEEEEecCc-----eEEeccCCcc
Q 036585 268 WAPGSLMFVTGSSE-----LSFWIPDLSK 291 (304)
Q Consensus 268 ~~~~~~~l~s~~~d-----~~iw~~~~~~ 291 (304)
|+|.|++++.++-+ +.|||....+
T Consensus 319 fnp~g~ii~lAGFGNL~G~mEvwDv~n~K 347 (566)
T KOG2315|consen 319 FNPHGNIILLAGFGNLPGDMEVWDVPNRK 347 (566)
T ss_pred ECCCCCEEEEeecCCCCCceEEEeccchh
Confidence 99999999988866 8999985533
No 280
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.33 E-value=5.3e-09 Score=93.28 Aligned_cols=265 Identities=14% Similarity=0.192 Sum_probs=163.2
Q ss_pred EeecccCcEEEEeeCCCeEEEE----ecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEcc------
Q 036585 21 LQSMEVGIYLVTASDDESIRLY----DVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH------ 90 (304)
Q Consensus 21 i~~~~~~~~l~~~~~d~~i~vw----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~------ 90 (304)
+.+.++...++.+..+|.|.+. +..+.. +...-.-..+|.+++||||+..|+..+. ++++.+.+-.
T Consensus 81 ~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~---~~~l~~mt~~fd~i~E 156 (928)
T PF04762_consen 81 FQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTG---EGNLLLMTRDFDPISE 156 (928)
T ss_pred EEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeC---CCEEEEEeccceEEEE
Confidence 4566778888888899999998 443322 2222223468999999999999999997 8787775421
Q ss_pred ---------C--------ceeeeeccc------------------------ccccEEEEEEcCCCCEEEEccc------C
Q 036585 91 ---------D--------NKYSRYFKG------------------------HHDRVVLLSLCSSKDCFISGSL------D 123 (304)
Q Consensus 91 ---------~--------~~~~~~~~~------------------------~~~~v~~~~~~~~~~~l~~~~~------d 123 (304)
. |+....|+| +.+.-..++|..||.+|++.+. -
T Consensus 157 ~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~ 236 (928)
T PF04762_consen 157 VPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSR 236 (928)
T ss_pred eecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCce
Confidence 0 010111110 2224457889999999998764 2
Q ss_pred CeEEEEeCCcceeeceEEE--eccceeEecCCCeEEEecC-----CCeEEEE----------ec--CCCCCceEEEEecC
Q 036585 124 RTVLLWDQRAEKCQGLLRV--QGRPAAAYDDQGLVFGYEK-----GPLDIFS----------VG--GDISDANVVKFSND 184 (304)
Q Consensus 124 g~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~----------~~--~~~~~v~~~~~~~~ 184 (304)
..+++|+-+ +........ .-...++|.|.|.++.... ..+.+|. +. .....|..+.|++|
T Consensus 237 R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~d 315 (928)
T PF04762_consen 237 RVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSD 315 (928)
T ss_pred eEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCC
Confidence 579999854 443333221 1122566777765442221 1222222 21 24567899999999
Q ss_pred CcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCC-cEEEEecCCCcEEEEecC----CCc--------
Q 036585 185 GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG-MFVISGSGDGSVHAWSVR----SGK-------- 251 (304)
Q Consensus 185 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~v~d~~----~~~-------- 251 (304)
+..|++...|. |.+|-..+.....+....-.....+..+.|+|.. ..|...+.+|.+..++.. .+.
T Consensus 316 s~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g 394 (928)
T PF04762_consen 316 SEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNG 394 (928)
T ss_pred CCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCce
Confidence 99999977654 9999988876554444322234445559999944 446666665666554431 110
Q ss_pred eeeee-----------------------eccCCCCceEEeCCCCcEEEEecCc--eEEeccCCcc
Q 036585 252 EVASW-----------------------MSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSK 291 (304)
Q Consensus 252 ~~~~~-----------------------~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~ 291 (304)
.+..+ -....+|.+++|++++..+++-..| +.+|.++...
T Consensus 395 ~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~ 459 (928)
T PF04762_consen 395 TVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKN 459 (928)
T ss_pred EEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCC
Confidence 01100 1235679999999998766665555 8888876543
No 281
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.33 E-value=8.2e-09 Score=76.44 Aligned_cols=208 Identities=12% Similarity=0.153 Sum_probs=123.5
Q ss_pred eecccCcEEEEeeCCCeEEEEecCCc--ceeeee---cccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee
Q 036585 22 QSMEVGIYLVTASDDESIRLYDVTAA--TCLKTI---NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR 96 (304)
Q Consensus 22 ~~~~~~~~l~~~~~d~~i~vw~~~~~--~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~ 96 (304)
....+|+.||.- .|..|.|-..++. ..+.+. +...-.-.-++||||+..|+.+.+ .|+|+++|+...+..
T Consensus 4 ~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S---~G~i~vfdl~g~~lf- 78 (282)
T PF15492_consen 4 ALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAES---TGTIRVFDLMGSELF- 78 (282)
T ss_pred eecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcC---CCeEEEEecccceeE-
Confidence 445678888776 4567777765432 122222 222334678999999999999998 999999999864432
Q ss_pred eccc-------ccccEEEEEEcCC------CCEEEEcccCCeEEEEeCCcce-----eeceEEEeccceeEecCCCeEEE
Q 036585 97 YFKG-------HHDRVVLLSLCSS------KDCFISGSLDRTVLLWDQRAEK-----CQGLLRVQGRPAAAYDDQGLVFG 158 (304)
Q Consensus 97 ~~~~-------~~~~v~~~~~~~~------~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 158 (304)
.+.. -...|..+.|.+. ...|++-..+|.++-|-+..+. ....+....
T Consensus 79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~-------------- 144 (282)
T PF15492_consen 79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSS-------------- 144 (282)
T ss_pred EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecc--------------
Confidence 2221 2346677777642 1256666677777777653221 111221110
Q ss_pred ecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCC-----------eEEEEEcCCCce--------------------
Q 036585 159 YEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEG-----------HIHVLDSFRGTL-------------------- 207 (304)
Q Consensus 159 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------~i~~~d~~~~~~-------------------- 207 (304)
.....|+++.++|..++|++|+... -+.-|.+-++.+
T Consensus 145 ------------~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~ 212 (282)
T PF15492_consen 145 ------------HYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRG 212 (282)
T ss_pred ------------cCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccc
Confidence 1234555666666555555543210 123332211110
Q ss_pred ------eEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccC
Q 036585 208 ------LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD 260 (304)
Q Consensus 208 ------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~ 260 (304)
...+.........|..+..||||+.||+...+|.|.+|++.+.+..+.+..+.
T Consensus 213 ~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~e 271 (282)
T PF15492_consen 213 LLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDE 271 (282)
T ss_pred eeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence 00111111346678899999999999999999999999999888777765443
No 282
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.31 E-value=6.1e-11 Score=90.99 Aligned_cols=160 Identities=16% Similarity=0.233 Sum_probs=109.4
Q ss_pred eeEEEEccCCCeEEEEecCCCCCceEEEEccCcee----eeecccccccEEEEEEcCCCCEEEEc---ccCCeEEEEeCC
Q 036585 60 VDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY----SRYFKGHHDRVVLLSLCSSKDCFISG---SLDRTVLLWDQR 132 (304)
Q Consensus 60 v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~iwd~~ 132 (304)
...+..++.++.++++.. +....+++...... ..... -...-+++.|..+......+ +....+.+|...
T Consensus 65 ~~~~~~s~~~~llAv~~~---~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~ 140 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATS---SKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSAD 140 (390)
T ss_pred ccccccCCCceEEEEEeC---CCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccc
Confidence 445566778888888887 77776777655432 11111 12223344444444444433 333445555544
Q ss_pred cceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEE
Q 036585 133 AEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN 212 (304)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 212 (304)
.+.....+ +|.+.+..++++||+++++++..|..|++-....-..+..+-
T Consensus 141 ~~~~~~~l------------------------------GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc 190 (390)
T KOG3914|consen 141 SGRCEPIL------------------------------GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC 190 (390)
T ss_pred ccCcchhh------------------------------hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc
Confidence 33333222 688899999999999999999999999998877666666665
Q ss_pred eCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeee
Q 036585 213 VKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASW 256 (304)
Q Consensus 213 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 256 (304)
. +|..-|..++.-++ ..|++++.|++|++||+.+++.+..+
T Consensus 191 l--GH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 191 L--GHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred c--ccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCccccc
Confidence 4 68889999998765 45899999999999999999876554
No 283
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=9.5e-11 Score=91.37 Aligned_cols=243 Identities=12% Similarity=0.111 Sum_probs=170.3
Q ss_pred CcEEEEeeCCCeEEEEecCC---cceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccc--c
Q 036585 27 GIYLVTASDDESIRLYDVTA---ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKG--H 101 (304)
Q Consensus 27 ~~~l~~~~~d~~i~vw~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~--~ 101 (304)
.+++.+++.||.++.|.... -+.+..+..|...+.+++.+.++..+.+.+.. |..++++|+++-..+..++. .
T Consensus 20 a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~--Dhs~KvfDvEn~DminmiKL~~l 97 (558)
T KOG0882|consen 20 AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDP--DHSVKVFDVENFDMINMIKLVDL 97 (558)
T ss_pred hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCc--ccceeEEEeeccchhhhcccccC
Confidence 67999999999999998543 13445566788899999999999988887653 89999999987655433331 1
Q ss_pred cccEEEEEEcCCC-C-EEE-EcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceE
Q 036585 102 HDRVVLLSLCSSK-D-CFI-SGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANV 178 (304)
Q Consensus 102 ~~~v~~~~~~~~~-~-~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 178 (304)
.+.+. ...+|.. . .++ +.-.++.+.++|-....+..... .+-|..+|..
T Consensus 98 Pg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~f---------------------------kklH~sPV~~ 149 (558)
T KOG0882|consen 98 PGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYF---------------------------KKLHFSPVKK 149 (558)
T ss_pred CCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCcccee---------------------------cccccCceEE
Confidence 22222 1222221 1 233 33467889999976554332221 1247789999
Q ss_pred EEEecCCcEEEEeeCCCeEEEEEcCC------CceeEEEE------eCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEe
Q 036585 179 VKFSNDGRLMLLTTMEGHIHVLDSFR------GTLLSTYN------VKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWS 246 (304)
Q Consensus 179 ~~~~~~~~~l~~~~~dg~i~~~d~~~------~~~~~~~~------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d 246 (304)
+.++|.+..+++....|.|.-|.... .+....++ ..+.......++.|+|++..+.+-+.|..|++++
T Consensus 150 i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~ 229 (558)
T KOG0882|consen 150 IRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFV 229 (558)
T ss_pred EEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEE
Confidence 99999999999999999999998762 11111111 1113456778999999999999999999999999
Q ss_pred cCCCceeeeee--------------------------------ccC-CCCceEEeCCCCcEEEEecCc-eEEeccCCccc
Q 036585 247 VRSGKEVASWM--------------------------------SFD-TEPPVIKWAPGSLMFVTGSSE-LSFWIPDLSKL 292 (304)
Q Consensus 247 ~~~~~~~~~~~--------------------------------~~~-~~i~~~~~~~~~~~l~s~~~d-~~iw~~~~~~~ 292 (304)
+++++.++.+. .|. ..-+.+.|...+++|+-++-= +++.+++.+.+
T Consensus 230 ~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v 309 (558)
T KOG0882|consen 230 FKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTV 309 (558)
T ss_pred eccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeE
Confidence 99987544331 111 234567899999999988877 99999988877
Q ss_pred cccccCC
Q 036585 293 GAYVGRN 299 (304)
Q Consensus 293 ~~~~~~~ 299 (304)
.+..|+.
T Consensus 310 ~ri~gk~ 316 (558)
T KOG0882|consen 310 VRILGKD 316 (558)
T ss_pred EEEeccc
Confidence 6665543
No 284
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.28 E-value=8.2e-09 Score=93.76 Aligned_cols=222 Identities=15% Similarity=0.206 Sum_probs=134.1
Q ss_pred eeEeecccCcEEEEee-CCCeEEEEecCCcceeeeeccc-----------------ccceeEEEEccCCCeEEEEecCCC
Q 036585 19 EILQSMEVGIYLVTAS-DDESIRLYDVTAATCLKTINSK-----------------KYGVDLVCFTSHPTTVIYSSKNGW 80 (304)
Q Consensus 19 ~~i~~~~~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~l~~~~~~~~ 80 (304)
.-+.+.++++.|+++. .++.|+++|..++. +.++.+. -.....++++|++..++++...
T Consensus 627 ~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-- 703 (1057)
T PLN02919 627 QGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-- 703 (1057)
T ss_pred cEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC--
Confidence 4466667777655544 45679999987654 3333210 1134679999955555444332
Q ss_pred CCceEEEEccCceeeeecc---------c------ccccEEEEEEcCCCCE-EEEcccCCeEEEEeCCcceeeceEEEec
Q 036585 81 DESLRLLSLHDNKYSRYFK---------G------HHDRVVLLSLCSSKDC-FISGSLDRTVLLWDQRAEKCQGLLRVQG 144 (304)
Q Consensus 81 d~~i~vwd~~~~~~~~~~~---------~------~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 144 (304)
++.|++||..++... .+. + .-.....++++|+++. +++-+.++.|++||+.++...... .+
T Consensus 704 ~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~--gg 780 (1057)
T PLN02919 704 QHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA--GG 780 (1057)
T ss_pred CCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE--ec
Confidence 889999998776432 111 1 1123567999999884 445566789999999876532111 00
Q ss_pred cceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeC----------
Q 036585 145 RPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK---------- 214 (304)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~---------- 214 (304)
... .......++..++... .........++++++|..+++-..+++|++||..++.........
T Consensus 781 ~~~--~~~~l~~fG~~dG~g~----~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~ 854 (1057)
T PLN02919 781 DPT--FSDNLFKFGDHDGVGS----EVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKAL 854 (1057)
T ss_pred ccc--cCcccccccCCCCchh----hhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccc
Confidence 000 0000000000000000 001123457899999998888888999999999877655333210
Q ss_pred CCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCce
Q 036585 215 PVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKE 252 (304)
Q Consensus 215 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~ 252 (304)
...-.....++++++|+.+++-+.++.|++||+.+++.
T Consensus 855 ~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 855 KAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 01122567899999999888888999999999988764
No 285
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.28 E-value=2.9e-10 Score=85.71 Aligned_cols=239 Identities=14% Similarity=0.185 Sum_probs=157.4
Q ss_pred cceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEcc-Cceeeeecc-cccccEEEEEEcCCCCEEEEcccCC
Q 036585 47 ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH-DNKYSRYFK-GHHDRVVLLSLCSSKDCFISGSLDR 124 (304)
Q Consensus 47 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg 124 (304)
...++.+++|.+.++....-|....+++.+. |.+++||--. .++.-..+. ....+++++.+.++...|+.|-..|
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~---drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ng 90 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSE---DRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNG 90 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccc---cceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecc
Confidence 3456778899999999999999999999998 9999999544 344333332 2356889999999999999999999
Q ss_pred eEEEEeCCccee----eceEEEeccc--eeEec-CCCeEEEecCCCeEEEEecCCCCCc---------eEEEEecCCcEE
Q 036585 125 TVLLWDQRAEKC----QGLLRVQGRP--AAAYD-DQGLVFGYEKGPLDIFSVGGDISDA---------NVVKFSNDGRLM 188 (304)
Q Consensus 125 ~i~iwd~~~~~~----~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v---------~~~~~~~~~~~l 188 (304)
++.-+.+...-. .+....+... ...++ +...++......-..|........+ +++.+.-. +.
T Consensus 91 tvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~ 168 (404)
T KOG1409|consen 91 TVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YA 168 (404)
T ss_pred eEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EE
Confidence 998886543211 1111111111 11111 1222222222222222221111111 11111111 44
Q ss_pred EEeeCCCeEEEEEcC--CCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCce-eeeeeccCCCCce
Q 036585 189 LLTTMEGHIHVLDSF--RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKE-VASWMSFDTEPPV 265 (304)
Q Consensus 189 ~~~~~dg~i~~~d~~--~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~i~~ 265 (304)
.+|...|.|..-.+. .-.++.++. +|.+.+++++|.|....|++|..|..+.+||+--.+- ..++.+|...|..
T Consensus 169 fvGd~~gqvt~lr~~~~~~~~i~~~~---~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~ 245 (404)
T KOG1409|consen 169 FVGDHSGQITMLKLEQNGCQLITTFN---GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQA 245 (404)
T ss_pred EecccccceEEEEEeecCCceEEEEc---CcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhh
Confidence 556666666554443 334455555 7999999999999999999999999999999965443 4567889999999
Q ss_pred EEeCCCCcEEEEecCc--eEEeccCCcccc
Q 036585 266 IKWAPGSLMFVTGSSE--LSFWIPDLSKLG 293 (304)
Q Consensus 266 ~~~~~~~~~l~s~~~d--~~iw~~~~~~~~ 293 (304)
+...+--+.+.+++.| +.+|+++.....
T Consensus 246 l~~~~~t~~l~S~~edg~i~~w~mn~~r~e 275 (404)
T KOG1409|consen 246 LSYAQHTRQLISCGEDGGIVVWNMNVKRVE 275 (404)
T ss_pred hhhhhhheeeeeccCCCeEEEEeccceeec
Confidence 9988888999999999 999999876544
No 286
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.28 E-value=1.8e-10 Score=85.87 Aligned_cols=228 Identities=13% Similarity=0.192 Sum_probs=142.6
Q ss_pred ccceeEEEEccCCCeEEEEecCCCCCceEEEEccCce-----eeeeccccc------------ccEEEEEEcCCC--CEE
Q 036585 57 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK-----YSRYFKGHH------------DRVVLLSLCSSK--DCF 117 (304)
Q Consensus 57 ~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l 117 (304)
...|+++.|...|.++++|.. .|.|.+|.-+... ....+++|. ..|..+.|..++ ..+
T Consensus 26 ad~ItaVefd~tg~YlatGDk---gGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF 102 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDK---GGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF 102 (460)
T ss_pred cceeeEEEeccccceEeecCC---CceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence 356899999999999999977 7899998765432 223344443 357778887543 367
Q ss_pred EEcccCCeEEEEeCCcceeeceEEE--------e-ccce--------eEecCCCeEEEecCCCeEEEEecCCCCCceEEE
Q 036585 118 ISGSLDRTVLLWDQRAEKCQGLLRV--------Q-GRPA--------AAYDDQGLVFGYEKGPLDIFSVGGDISDANVVK 180 (304)
Q Consensus 118 ~~~~~dg~i~iwd~~~~~~~~~~~~--------~-~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 180 (304)
+..+.|.+|++|.+........-.. + +.+. ...+....++.. .+.+++ ...|..-++++.
T Consensus 103 LlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa--~p~rvy-aNaH~yhiNSiS 179 (460)
T COG5170 103 LLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAA--KPCRVY-ANAHPYHINSIS 179 (460)
T ss_pred EEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEe--ccceec-cccceeEeeeee
Confidence 7778899999999875422111100 0 0000 001111111111 111111 135777889999
Q ss_pred EecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCC-----CcceEEEEcCCC-cEEEEecCCCcEEEEecCCCce--
Q 036585 181 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR-----NSTLEASFSPEG-MFVISGSGDGSVHAWSVRSGKE-- 252 (304)
Q Consensus 181 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-----~~i~~~~~s~~~-~~l~~~~~dg~i~v~d~~~~~~-- 252 (304)
|+.|.+.++++ .|=+|.+|++.-......+..-..+. .-|++..|+|.. +.+.-.+..|.|++-|++...+
T Consensus 180 ~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcd 258 (460)
T COG5170 180 FNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCD 258 (460)
T ss_pred ecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhcc
Confidence 99988876655 56789999986543333222111222 357889999953 4555666789999999984221
Q ss_pred ----eee----------eeccCCCCceEEeCCCCcEEEEecCc-eEEeccCCcc
Q 036585 253 ----VAS----------WMSFDTEPPVIKWAPGSLMFVTGSSE-LSFWIPDLSK 291 (304)
Q Consensus 253 ----~~~----------~~~~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~~~~~ 291 (304)
+.. +.+-...|..+.|+++|+++++-+.- ++||+.+..+
T Consensus 259 n~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k 312 (460)
T COG5170 259 NSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAK 312 (460)
T ss_pred CchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccccc
Confidence 111 12334678899999999999988877 9999998754
No 287
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=2.9e-10 Score=93.89 Aligned_cols=220 Identities=13% Similarity=0.177 Sum_probs=153.0
Q ss_pred cceeEEEEccCCCeEEEEecCCCCCceEEEEccCce---------------eeeecccccccEEEEEEcCCCCEEEEccc
Q 036585 58 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK---------------YSRYFKGHHDRVVLLSLCSSKDCFISGSL 122 (304)
Q Consensus 58 ~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 122 (304)
....|++|+....++++|+. ||.+++..+.+.. .-+++.+|.+.|.-+.|+.+.+.|-+...
T Consensus 15 vkL~c~~WNke~gyIAcgG~---dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGA---DGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred ceEEEEEEcccCCeEEeccc---cceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence 46889999999999999999 9999999886532 13567899999999999999999999999
Q ss_pred CCeEEEEeCCcceeeceEEEe----ccceeEecCCC--eEEEecCCCeEEEEecCC--------CCCceEEEEecCCcEE
Q 036585 123 DRTVLLWDQRAEKCQGLLRVQ----GRPAAAYDDQG--LVFGYEKGPLDIFSVGGD--------ISDANVVKFSNDGRLM 188 (304)
Q Consensus 123 dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~l 188 (304)
+|.|.+|-+-.++....+... -...++|..+| ..+.+++|.+.+-.+.+. ......+.|++|.+.+
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQA 171 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHH
Confidence 999999988766543332111 11234555554 344666666665555442 3445678999999999
Q ss_pred EEeeCCCeEEEEEcCCC-----ceeEEEE---eCCCCCCcceEEEEc--------CCCcEEEEecCCCcEEEEecCCCce
Q 036585 189 LLTTMEGHIHVLDSFRG-----TLLSTYN---VKPVSRNSTLEASFS--------PEGMFVISGSGDGSVHAWSVRSGKE 252 (304)
Q Consensus 189 ~~~~~dg~i~~~d~~~~-----~~~~~~~---~~~~~~~~i~~~~~s--------~~~~~l~~~~~dg~i~v~d~~~~~~ 252 (304)
+.+-.+|.+.+||.+.. +...... ........+..+.|. ||...|+.+-.+|.+.+..-.+...
T Consensus 172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~ 251 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE 251 (1189)
T ss_pred HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC
Confidence 99999999999996432 1111111 000112224444443 5778999999999988876544333
Q ss_pred eeeeeccCCCCceEEeCCCCcEEEEecCc
Q 036585 253 VASWMSFDTEPPVIKWAPGSLMFVTGSSE 281 (304)
Q Consensus 253 ~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 281 (304)
...+. ....+....|+++|..|+.++.+
T Consensus 252 Pvv~d-tgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 252 PVVVD-TGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred CeEEe-cccEeecceecCCCcEEEEccCc
Confidence 22232 33678899999999999999865
No 288
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.27 E-value=2.4e-10 Score=87.80 Aligned_cols=164 Identities=16% Similarity=0.223 Sum_probs=117.2
Q ss_pred eeeEeecccCcEEEEeeCCCeEEEEecCCcc----eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCce
Q 036585 18 EEILQSMEVGIYLVTASDDESIRLYDVTAAT----CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK 93 (304)
Q Consensus 18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~ 93 (304)
...+..++.++++|.+..+....++++.... ++....... ...++.|..+......+-..|....+.+|....+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~-~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK-RPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc-CcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 3445667789999999888887777766433 222222222 34556666666666666553336667777766544
Q ss_pred eeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCC
Q 036585 94 YSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDI 173 (304)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (304)
+ ..+-+|-..++.++|+||+++++++..|..|++-.......+..+.. +|.
T Consensus 144 ~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl----------------------------GH~ 194 (390)
T KOG3914|consen 144 C-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL----------------------------GHK 194 (390)
T ss_pred c-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc----------------------------ccH
Confidence 3 44557999999999999999999999999999976654444333321 577
Q ss_pred CCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEE
Q 036585 174 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN 212 (304)
Q Consensus 174 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 212 (304)
.-|..++.-++. .|++++.|+++++||+++|+.+.++.
T Consensus 195 eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 195 EFVSTISLTDNY-LLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred hheeeeeeccCc-eeeecCCCCcEEEEecccCCcccccc
Confidence 888888887654 58999999999999999999887765
No 289
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.25 E-value=2.7e-09 Score=78.01 Aligned_cols=193 Identities=15% Similarity=0.107 Sum_probs=131.5
Q ss_pred EEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCce-e-ee-ecccccccE
Q 036585 29 YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK-Y-SR-YFKGHHDRV 105 (304)
Q Consensus 29 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~-~-~~-~~~~~~~~v 105 (304)
.+..++.|.++++.+++.+.....+....-.+.+++++++++++++.+. ...|..|.+.... . +. .....++.-
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgd---s~~Vf~y~id~~sey~~~~~~a~t~D~g 206 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGD---SRRVFRYAIDDESEYIENIYEAPTSDHG 206 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecC---CCcceEEEeCCccceeeeeEecccCCCc
Confidence 3566778888888887654333322222234889999999999999998 8899999886532 2 22 223344455
Q ss_pred EEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCC
Q 036585 106 VLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDG 185 (304)
Q Consensus 106 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 185 (304)
.+..|+.....+|++..||++.|||++............. ..|.+.++.+.|++-|
T Consensus 207 F~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstr------------------------p~hnGa~R~c~Fsl~g 262 (344)
T KOG4532|consen 207 FYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTR------------------------PHHNGAFRVCRFSLYG 262 (344)
T ss_pred eeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccC------------------------CCCCCceEEEEecCCC
Confidence 7889999999999999999999999997665444332222 1477899999999866
Q ss_pred c--EEEEeeCCCeEEEEEcCCCceeEEEEeCCC----CC-CcceEEEEcCCCcEEEEecCCCcEEEEecCC
Q 036585 186 R--LMLLTTMEGHIHVLDSFRGTLLSTYNVKPV----SR-NSTLEASFSPEGMFVISGSGDGSVHAWSVRS 249 (304)
Q Consensus 186 ~--~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~----~~-~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~ 249 (304)
. +|+..-.-+.+.+.|+++++....+...+. |. ..+....|+.++.-+.+.+++ .+.=|++.+
T Consensus 263 ~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 263 LLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred cceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch-hhheeeccc
Confidence 3 456666667899999999887666653221 11 236667777776666666544 244555543
No 290
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=6.4e-11 Score=89.30 Aligned_cols=160 Identities=16% Similarity=0.210 Sum_probs=117.3
Q ss_pred CCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEec
Q 036585 81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYE 160 (304)
Q Consensus 81 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (304)
+..+-+-|++++-. +.|. ..+.|.++.|...+++++.|..+|.|..+|++....-.....+
T Consensus 233 sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~----------------- 293 (425)
T KOG2695|consen 233 SQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ----------------- 293 (425)
T ss_pred cceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE-----------------
Confidence 78899999988753 3344 5678999999998999999999999999999876211100000
Q ss_pred CCCeEEEEecCCCCCceEEEEec-CCcEEEEeeCCCeEEEEEcCCCce---eEEEEeCCCCCCc--ceEEEEcCCCcEEE
Q 036585 161 KGPLDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTL---LSTYNVKPVSRNS--TLEASFSPEGMFVI 234 (304)
Q Consensus 161 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~---~~~~~~~~~~~~~--i~~~~~s~~~~~l~ 234 (304)
.+ -|.+.|+++..-. ++++|++.+.+|+|.+||++.-+. +..+. +|-+. -.-+...+....++
T Consensus 294 ----rl----yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe---GHvN~~a~l~~~v~~eeg~I~ 362 (425)
T KOG2695|consen 294 ----RL----YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE---GHVNLSAYLPAHVKEEEGSIF 362 (425)
T ss_pred ----EE----EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeee---cccccccccccccccccceEE
Confidence 00 2667888888766 788999999999999999987666 66666 33322 22244566777899
Q ss_pred EecCCCcEEEEecCCCceeeeeeccC----CCCceEEeCC
Q 036585 235 SGSGDGSVHAWSVRSGKEVASWMSFD----TEPPVIKWAP 270 (304)
Q Consensus 235 ~~~~dg~i~v~d~~~~~~~~~~~~~~----~~i~~~~~~~ 270 (304)
+++.|...|||.++++.++.+++... ..+.+++|..
T Consensus 363 s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 363 SVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred EccCeeEEEEEecccCceeeccCCCCccccccccceehhc
Confidence 99999999999999999988875432 2345566543
No 291
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=7.9e-09 Score=83.03 Aligned_cols=241 Identities=12% Similarity=0.185 Sum_probs=158.9
Q ss_pred EEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEE
Q 036585 39 IRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFI 118 (304)
Q Consensus 39 i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 118 (304)
...|+.........-....-.-+-+.|||.|.+|++-. ..-|.+|--++-..++.+. |. .|.-+.|||+.+||+
T Consensus 192 svfwN~~~n~p~~ie~RenWTetyv~wSP~GTYL~t~H----k~GI~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLV 265 (698)
T KOG2314|consen 192 SVFWNSKFNEPSLIEERENWTETYVRWSPKGTYLVTFH----KQGIALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLV 265 (698)
T ss_pred EEEccccCCchhhhhhhhcceeeeEEecCCceEEEEEe----ccceeeecCccHHHHHhcc-CC-CceeeecCCccceEE
Confidence 44576544322221111222345789999999999998 5678899877666666665 65 488899999999999
Q ss_pred Eccc-----------CCeEEEEeCCcceeeceEEEecc-----ceeEecCCCeEEEe-cCCCeEEEEec--------C-C
Q 036585 119 SGSL-----------DRTVLLWDQRAEKCQGLLRVQGR-----PAAAYDDQGLVFGY-EKGPLDIFSVG--------G-D 172 (304)
Q Consensus 119 ~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~--------~-~ 172 (304)
+-+. ...++|||+++|...+.+..... +.+.|+.+..++.. ....+.++... . .
T Consensus 266 T~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslk 345 (698)
T KOG2314|consen 266 TYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLK 345 (698)
T ss_pred EecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccC
Confidence 8542 25799999999999888876322 35667777655532 22344444322 1 3
Q ss_pred CCCceEEEEecCCcEEEEeeC-----CCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEec----------
Q 036585 173 ISDANVVKFSNDGRLMLLTTM-----EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS---------- 237 (304)
Q Consensus 173 ~~~v~~~~~~~~~~~l~~~~~-----dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---------- 237 (304)
...|....|+|.++.||-=.. -.++.+..+.+++.+++... +.-.-..+.|-.+|.+|+.--
T Consensus 346 i~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nl---fnVsDckLhWQk~gdyLcvkvdR~tK~~~~g 422 (698)
T KOG2314|consen 346 ISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNL---FNVSDCKLHWQKSGDYLCVKVDRHTKSKVKG 422 (698)
T ss_pred CccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccc---eeeeccEEEeccCCcEEEEEEEeeccccccc
Confidence 467888999999988875322 23577778777777776653 333333477888898887532
Q ss_pred CCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc-----eEEeccC
Q 036585 238 GDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE-----LSFWIPD 288 (304)
Q Consensus 238 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-----~~iw~~~ 288 (304)
.-..+-|+.++.....-........|...+|-|.|..+++-+.+ +++|.++
T Consensus 423 ~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e 478 (698)
T KOG2314|consen 423 QFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVE 478 (698)
T ss_pred eEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEee
Confidence 11235566665544322223456778899999999888776655 8888776
No 292
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.22 E-value=2.8e-08 Score=75.88 Aligned_cols=222 Identities=18% Similarity=0.137 Sum_probs=135.0
Q ss_pred CCeEEEEecCCcceeeeecccccceeEEE--EccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCC
Q 036585 36 DESIRLYDVTAATCLKTINSKKYGVDLVC--FTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSS 113 (304)
Q Consensus 36 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 113 (304)
+|.|..||..+++.+-...... ...... ..+++..+++++. ++.|..||..+|+.+..+.. ..++.... ...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~---~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP-GIGGPVATAVPDGGRVYVASG---DGNLYALDAKTGKVLWRFDL-PGPISGAP-VVD 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS-SCSSEEETEEEETTEEEEEET---TSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEE
T ss_pred CCEEEEEECCCCCEEEEEECCC-CCCCccceEEEeCCEEEEEcC---CCEEEEEECCCCCEEEEeec-ccccccee-eec
Confidence 6889999999999887775411 122222 3336777777766 99999999999988766653 22211111 123
Q ss_pred CCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC
Q 036585 114 KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM 193 (304)
Q Consensus 114 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 193 (304)
+..++.++.++.++.+|.++++..........+. . ..........++..++++..
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~------------------------~-~~~~~~~~~~~~~~~~~~~~ 130 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPP------------------------A-GVRSSSSPAVDGDRLYVGTS 130 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCT------------------------C-STB--SEEEEETTEEEEEET
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccc------------------------c-ccccccCceEecCEEEEEec
Confidence 4566777788899999999999877642211000 0 01112233334778888888
Q ss_pred CCeEEEEEcCCCceeEEEEeCCCCC-Cc------ceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceE
Q 036585 194 EGHIHVLDSFRGTLLSTYNVKPVSR-NS------TLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVI 266 (304)
Q Consensus 194 dg~i~~~d~~~~~~~~~~~~~~~~~-~~------i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~ 266 (304)
++.|..+|.++|+.+.......... .. +..-....++ .++.++.++.+.-+|+.+++.+.... ...+..+
T Consensus 131 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~ 207 (238)
T PF13360_consen 131 SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL 207 (238)
T ss_dssp CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC
T ss_pred cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC
Confidence 9999999999999998888522111 11 1122222244 67777777754444999998654332 2223332
Q ss_pred EeCCCCcEEEEecCc--eEEeccCCccc
Q 036585 267 KWAPGSLMFVTGSSE--LSFWIPDLSKL 292 (304)
Q Consensus 267 ~~~~~~~~l~s~~~d--~~iw~~~~~~~ 292 (304)
..+++..|+.++.+ +..|+....+.
T Consensus 208 -~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 208 -PSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp -EECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred -ceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 34566666666645 77777765543
No 293
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.22 E-value=4.5e-10 Score=94.97 Aligned_cols=183 Identities=15% Similarity=0.227 Sum_probs=139.5
Q ss_pred cCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccE
Q 036585 26 VGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRV 105 (304)
Q Consensus 26 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v 105 (304)
++..++.|+....+..+|+.+.+..+...-....|.-|.. +++.+++|.. .|+|.+-|.++.+.++++..|++.|
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t---~G~V~LrD~~s~~~iht~~aHs~si 220 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDT---RGTVFLRDPNSFETIHTFDAHSGSI 220 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecc---cceEEeecCCcCceeeeeeccccce
Confidence 3566777777778889999988887777665556666655 7788888888 9999999999999999999999999
Q ss_pred EEEEEcCCCCEEEEccc---------CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCc
Q 036585 106 VLLSLCSSKDCFISGSL---------DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDA 176 (304)
Q Consensus 106 ~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 176 (304)
..+.. .|+.|++++. |.-|++||+|..+.+..+..+..+
T Consensus 221 SDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P------------------------------ 268 (1118)
T KOG1275|consen 221 SDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP------------------------------ 268 (1118)
T ss_pred eeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc------------------------------
Confidence 87766 5888999875 566899999988776655433221
Q ss_pred eEEEEecC-CcEEEEeeCCCeEEEEEcCC-Cce-eEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEe
Q 036585 177 NVVKFSND-GRLMLLTTMEGHIHVLDSFR-GTL-LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWS 246 (304)
Q Consensus 177 ~~~~~~~~-~~~l~~~~~dg~i~~~d~~~-~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d 246 (304)
.-+.|.|. -..+++++..|...+-|..+ +.+ ...+... .....+..+++|++++.++.|..+|.|.+|.
T Consensus 269 ~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~-p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 269 QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVN-PNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred hhhhhcccccceEEEEecccceeeccccccCCCccceeEEc-cCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 23567774 34688889999999999432 122 2222222 2455699999999999999999999999997
No 294
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.22 E-value=1.4e-09 Score=81.31 Aligned_cols=236 Identities=16% Similarity=0.299 Sum_probs=151.9
Q ss_pred eEeecccCcEEEEeeCCCeEEEEecCCcc-----eeeeecccc------------cceeEEEEccCCC--eEEEEecCCC
Q 036585 20 ILQSMEVGIYLVTASDDESIRLYDVTAAT-----CLKTINSKK------------YGVDLVCFTSHPT--TVIYSSKNGW 80 (304)
Q Consensus 20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~--~l~~~~~~~~ 80 (304)
++.+-..|.||++|...|.|.++.-+... ....+++|. ..|..+.|..++. .++..+.
T Consensus 31 aVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstN--- 107 (460)
T COG5170 31 AVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTN--- 107 (460)
T ss_pred EEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecC---
Confidence 45666779999999999999999865332 233455554 3477888876543 4555555
Q ss_pred CCceEEEEccCcee-------------------e-----------------------eec-ccccccEEEEEEcCCCCEE
Q 036585 81 DESLRLLSLHDNKY-------------------S-----------------------RYF-KGHHDRVVLLSLCSSKDCF 117 (304)
Q Consensus 81 d~~i~vwd~~~~~~-------------------~-----------------------~~~-~~~~~~v~~~~~~~~~~~l 117 (304)
|.+|++|.+..... + +.+ ..|..-+.++.|..|...+
T Consensus 108 dktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~ 187 (460)
T COG5170 108 DKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETL 187 (460)
T ss_pred CceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchhee
Confidence 99999998754310 0 001 2466667788888887777
Q ss_pred EEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCC-----CCceEEEEecCC-cEEEEe
Q 036585 118 ISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDI-----SDANVVKFSNDG-RLMLLT 191 (304)
Q Consensus 118 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~-~~l~~~ 191 (304)
+++. |-.|.+|+++-.. +...+.++..|. .-|++..|+|.. ..+.-+
T Consensus 188 lSaD-dLrINLWnl~i~D--------------------------~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYS 240 (460)
T COG5170 188 LSAD-DLRINLWNLEIID--------------------------GSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYS 240 (460)
T ss_pred eecc-ceeeeeccccccC--------------------------CceEEEeccCccHHHHHHHHhhcccCHhHcceEEEe
Confidence 7654 5678888876432 122233333332 357788899854 456667
Q ss_pred eCCCeEEEEEcCCCce------eEEEEeC-------CCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC-ceeeeee
Q 036585 192 TMEGHIHVLDSFRGTL------LSTYNVK-------PVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG-KEVASWM 257 (304)
Q Consensus 192 ~~dg~i~~~d~~~~~~------~~~~~~~-------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~ 257 (304)
+..|.|++-|++.... +...... ......|..+.|+++|+++++-+. -+|++||.+.. .++.+++
T Consensus 241 sSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~ 319 (460)
T COG5170 241 SSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIP 319 (460)
T ss_pred cCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeec
Confidence 7889999999984321 1111110 012346778999999999998764 47999999754 4566664
Q ss_pred ccC------------CCC---ceEEeCCCCcEEEEecCc--eEEec
Q 036585 258 SFD------------TEP---PVIKWAPGSLMFVTGSSE--LSFWI 286 (304)
Q Consensus 258 ~~~------------~~i---~~~~~~~~~~~l~s~~~d--~~iw~ 286 (304)
-|. ..| ..+.|+.|.+.+.+|+.. .-||-
T Consensus 320 ~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 320 MHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred hHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence 442 122 347788888888888766 44443
No 295
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=1.1e-08 Score=85.41 Aligned_cols=236 Identities=11% Similarity=0.101 Sum_probs=158.3
Q ss_pred eeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCC----------C--eEEEEecCCCCCceE
Q 036585 18 EEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP----------T--TVIYSSKNGWDESLR 85 (304)
Q Consensus 18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~--~l~~~~~~~~d~~i~ 85 (304)
.+++.+++.| +||.|+.. .|.|-|..+.+.++.+..|...|+.+.|.|-. . .++++.. .|.|.
T Consensus 18 ~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~---~GrIi 92 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADI---SGRII 92 (1062)
T ss_pred ccccccCccc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccc---cCcEE
Confidence 3445566655 77777754 68999999999999999999999999998732 1 2334433 89999
Q ss_pred EEEccCceeeeecccccccEEEEEEcC---CC-CEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecC
Q 036585 86 LLSLHDNKYSRYFKGHHDRVVLLSLCS---SK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEK 161 (304)
Q Consensus 86 vwd~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (304)
+||...+..+..+..|.+++..++|-+ +. ..|++-....++.+|+..+|+.......
T Consensus 93 l~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y------------------- 153 (1062)
T KOG1912|consen 93 LVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY------------------- 153 (1062)
T ss_pred EEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecccc-------------------
Confidence 999999988889999999999999986 33 3566666678999999999887655432
Q ss_pred CCeEEEEecCCCCCceEEEEec-CCcEEEEeeCCCeEEEEEcCC----CceeEEEEeCCCCCC-----------------
Q 036585 162 GPLDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFR----GTLLSTYNVKPVSRN----------------- 219 (304)
Q Consensus 162 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~----~~~~~~~~~~~~~~~----------------- 219 (304)
......++.+.| |.+.+..-+..|.+.+-+.-. ..+.+.++....|..
T Consensus 154 ----------s~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~ 223 (1062)
T KOG1912|consen 154 ----------SHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTST 223 (1062)
T ss_pred ----------CCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCC
Confidence 223344455555 344444444555554444311 011111111111100
Q ss_pred --------cceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCC--cEEEEecCc--eEEecc
Q 036585 220 --------STLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGS--LMFVTGSSE--LSFWIP 287 (304)
Q Consensus 220 --------~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~s~~~d--~~iw~~ 287 (304)
....++|+|.-+.++.......+.++|++-..++....-..+.+.-+.|-|+. ..|++...| +.||.-
T Consensus 224 ~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 224 PASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred CcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence 11236788866555555567789999999888888876666767777888865 467777777 777754
No 296
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.17 E-value=6.3e-08 Score=79.60 Aligned_cols=248 Identities=11% Similarity=0.014 Sum_probs=142.8
Q ss_pred CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEE
Q 036585 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVV 106 (304)
Q Consensus 27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~ 106 (304)
+..++.++.+|.+..+|.++|+.+-+............. .+..++++.. ++.+.-+|..+|+.+..+......+.
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~---~g~l~ald~~tG~~~W~~~~~~~~~~ 194 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTS---NGMLQALNESDGAVKWTVNLDVPSLT 194 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECC---CCEEEEEEccCCCEeeeecCCCCccc
Confidence 566777888999999999999988766543321111112 2446666666 89999999999988766653211100
Q ss_pred E-EEEcC--CCCEEEEcccCCeEEEEeCCcceeeceEEEecc-------------ceeEecCCCeEEEecCCCeEEEEec
Q 036585 107 L-LSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-------------PAAAYDDQGLVFGYEKGPLDIFSVG 170 (304)
Q Consensus 107 ~-~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (304)
. ..-+| .+..++.++.+|.+..+|..+++.......... .......+..++...++.+..++..
T Consensus 195 ~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~ 274 (394)
T PRK11138 195 LRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR 274 (394)
T ss_pred ccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence 0 00111 123566677889999999988887665432111 0011112222223333333333322
Q ss_pred CC-------CCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEE
Q 036585 171 GD-------ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVH 243 (304)
Q Consensus 171 ~~-------~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 243 (304)
.. ......+. ..+..+++++.+|.+..+|..+++.+...... ......+... .+.+|+.++.+|.|+
T Consensus 275 tG~~~W~~~~~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~sp~v--~~g~l~v~~~~G~l~ 348 (394)
T PRK11138 275 SGQIVWKREYGSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDL--LHRLLTAPVL--YNGYLVVGDSEGYLH 348 (394)
T ss_pred CCCEEEeecCCCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEccccc--CCCcccCCEE--ECCEEEEEeCCCEEE
Confidence 11 01111111 24567888889999999999999876554311 1111122222 245788889999999
Q ss_pred EEecCCCceeeeeeccCCCCce-EEeCCCCcEEEEecCceEEecc
Q 036585 244 AWSVRSGKEVASWMSFDTEPPV-IKWAPGSLMFVTGSSELSFWIP 287 (304)
Q Consensus 244 v~d~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~s~~~d~~iw~~ 287 (304)
+.|..+++.+.+.......+.+ ..+ .+..|+.++.+..++.+
T Consensus 349 ~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~ 391 (394)
T PRK11138 349 WINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAI 391 (394)
T ss_pred EEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEE
Confidence 9999999988776543333322 122 23466667777555544
No 297
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.16 E-value=2.2e-07 Score=71.00 Aligned_cols=252 Identities=10% Similarity=0.076 Sum_probs=153.0
Q ss_pred eEeecc-cCcEEEEeeCCCe-EEEEecCCcceeeeecccccc--eeEEEEccCCCeEEEEecC--CCCCceEEEEcc-Cc
Q 036585 20 ILQSME-VGIYLVTASDDES-IRLYDVTAATCLKTINSKKYG--VDLVCFTSHPTTVIYSSKN--GWDESLRLLSLH-DN 92 (304)
Q Consensus 20 ~i~~~~-~~~~l~~~~~d~~-i~vw~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~~--~~d~~i~vwd~~-~~ 92 (304)
.+...| .+..++.+-.-|+ ..+||..+++..+.+....+. --.-.|++||++|++.-.+ ...|.|-|||.. +-
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~ 88 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY 88 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence 355566 4667777777665 778999999888776543221 1246899999999987431 127899999998 56
Q ss_pred eeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCC-eEEEEe--
Q 036585 93 KYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGP-LDIFSV-- 169 (304)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 169 (304)
+.+..+..|.-.-..+.+.||++.|+.+-. -|.- ..++++....+.... |+-.++...++. +.-+.+
T Consensus 89 ~ri~E~~s~GIGPHel~l~pDG~tLvVANG--GI~T-hpd~GR~kLNl~tM~-------psL~~ld~~sG~ll~q~~Lp~ 158 (305)
T PF07433_consen 89 RRIGEFPSHGIGPHELLLMPDGETLVVANG--GIET-HPDSGRAKLNLDTMQ-------PSLVYLDARSGALLEQVELPP 158 (305)
T ss_pred EEEeEecCCCcChhhEEEcCCCCEEEEEcC--CCcc-CcccCceecChhhcC-------CceEEEecCCCceeeeeecCc
Confidence 777778777666677889999987777532 1211 111111111111111 111112122222 334444
Q ss_pred cCCCCCceEEEEecCCcEEEEeeCCCe-------EEEEEcCCCceeEEEEeC----CCCCCcceEEEEcCCCcEEEEec-
Q 036585 170 GGDISDANVVKFSNDGRLMLLTTMEGH-------IHVLDSFRGTLLSTYNVK----PVSRNSTLEASFSPEGMFVISGS- 237 (304)
Q Consensus 170 ~~~~~~v~~~~~~~~~~~l~~~~~dg~-------i~~~d~~~~~~~~~~~~~----~~~~~~i~~~~~s~~~~~l~~~~- 237 (304)
..|+-.+..+++.++|..++..-..|. +-+++ .++....+... ....+.+-++++++++.++++.+
T Consensus 159 ~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP 236 (305)
T PF07433_consen 159 DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP 236 (305)
T ss_pred cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC
Confidence 346678899999999886555443332 33333 33333333311 12457888999999998886665
Q ss_pred CCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCceEEecc
Q 036585 238 GDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSELSFWIP 287 (304)
Q Consensus 238 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~iw~~ 287 (304)
..+.+.+||..+++.+....- ..+..++-.+++ ++++.+.. .++..
T Consensus 237 rGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~-f~~ssG~G-~~~~~ 282 (305)
T PF07433_consen 237 RGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDG-FLVSSGQG-QLIRL 282 (305)
T ss_pred CCCEEEEEECCCCCEeecccc--CceeeeeecCCc-eEEeCCCc-cEEEc
Confidence 567899999999998876543 345677777776 55555544 34433
No 298
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.16 E-value=5.1e-10 Score=92.67 Aligned_cols=236 Identities=14% Similarity=0.206 Sum_probs=156.3
Q ss_pred Eeeccc--Cc-EEEEeeCCCeEEEEecCC---cceeeeecccccceeEEEEccCCC-eEEEEecCCCCCceEEEEccCce
Q 036585 21 LQSMEV--GI-YLVTASDDESIRLYDVTA---ATCLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDESLRLLSLHDNK 93 (304)
Q Consensus 21 i~~~~~--~~-~l~~~~~d~~i~vw~~~~---~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~d~~i~vwd~~~~~ 93 (304)
+++++. -. .+++.+ ...-.+|++.. ...-..+.+|...++.+.|.|+.. .+++++. |..+..||+++..
T Consensus 73 ~qws~h~a~~~wiVsts-~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsv---dt~vh~wd~rSp~ 148 (1081)
T KOG0309|consen 73 VQWSPHPAKPYWIVSTS-NQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSV---DTYVHAWDMRSPH 148 (1081)
T ss_pred eecccCCCCceeEEecC-cchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccc---cccceeeeccCCC
Confidence 455554 23 344444 44566898763 334455778999999999999765 5666666 9999999998764
Q ss_pred -eeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCC
Q 036585 94 -YSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGD 172 (304)
Q Consensus 94 -~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (304)
++..+..-......++|+-....+++.+....|++||++.+..... .+++|
T Consensus 149 ~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~----------------------------s~K~~ 200 (1081)
T KOG0309|consen 149 RPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLC----------------------------SLKGH 200 (1081)
T ss_pred cceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceE----------------------------Eeccc
Confidence 4444444445567789987555566667778899999997754321 22345
Q ss_pred CCCceEEEEecC-CcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCc--EEEEecCCCcEEEEecC-
Q 036585 173 ISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM--FVISGSGDGSVHAWSVR- 248 (304)
Q Consensus 173 ~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~~~~~dg~i~v~d~~- 248 (304)
...++.++|+.- ...+.+++.||+|++||............ ....++..-++-|-|. ++.---.+..+.+++-+
T Consensus 201 vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v--tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n 278 (1081)
T KOG0309|consen 201 VSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV--TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCEN 278 (1081)
T ss_pred ceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec--cccCcceeccccccCceeEeccccCCeeeeeccccc
Confidence 667777777552 34578899999999999865543333322 2566777778888443 33322223344444333
Q ss_pred --------C-CceeeeeeccCCCCceEEeCCCC----------cEEEEecCc--eEEeccCCc
Q 036585 249 --------S-GKEVASWMSFDTEPPVIKWAPGS----------LMFVTGSSE--LSFWIPDLS 290 (304)
Q Consensus 249 --------~-~~~~~~~~~~~~~i~~~~~~~~~----------~~l~s~~~d--~~iw~~~~~ 290 (304)
+ .+++..+.+|...|....|-..+ -.|+|-+.| +++|-++.+
T Consensus 279 ~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 279 SDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred hhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 2 35688899999988777775432 379999999 999977644
No 299
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.2e-08 Score=78.83 Aligned_cols=244 Identities=10% Similarity=0.076 Sum_probs=147.2
Q ss_pred EEEEecCCcceeeeecccccceeEEEEccCCC-eEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCC-CCE
Q 036585 39 IRLYDVTAATCLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSS-KDC 116 (304)
Q Consensus 39 i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~ 116 (304)
+++.+..+.+..+-+.++...|..++|+|... .+..++. +..|+|.|+++...+..+..+ ..+++++|.-+ .++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl---~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~ 250 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASL---GNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHV 250 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeecc---CceEEEEecccceeeeheecc-CCceeeeeccCCcce
Confidence 55555555555566677888999999999888 4566666 999999999999988888877 78999999865 457
Q ss_pred EEEcccCCeEEEEeCCcceeeceEE---Eecccee--------EecCCCeEEEecCCCeEEEEecC------------CC
Q 036585 117 FISGSLDRTVLLWDQRAEKCQGLLR---VQGRPAA--------AYDDQGLVFGYEKGPLDIFSVGG------------DI 173 (304)
Q Consensus 117 l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~------------~~ 173 (304)
+++|..+|.|.+||++..+...... ....+.. ...+.+-++......+..|.+.. ..
T Consensus 251 IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele~p 330 (463)
T KOG1645|consen 251 IYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELEPP 330 (463)
T ss_pred eEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCcccccCCC
Confidence 8888899999999998765322110 0111111 11122222333333333333322 13
Q ss_pred CCceEEEEecCCcEEEEeeCCC-------e-EEEEEcCCCceeEEEEeCCCC-CCc------ceEEEEcCCCcEEE-Eec
Q 036585 174 SDANVVKFSNDGRLMLLTTMEG-------H-IHVLDSFRGTLLSTYNVKPVS-RNS------TLEASFSPEGMFVI-SGS 237 (304)
Q Consensus 174 ~~v~~~~~~~~~~~l~~~~~dg-------~-i~~~d~~~~~~~~~~~~~~~~-~~~------i~~~~~s~~~~~l~-~~~ 237 (304)
+...++++.+..+.++...... . +.--|..+|.++..-+. .+ ... -..+.-.++.++++ .++
T Consensus 331 G~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~--~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd 408 (463)
T KOG1645|consen 331 GICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRR--TYFGSKQTKLSTTQAIRAVEDNNYIVVVGD 408 (463)
T ss_pred cceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecc--cccCCcccccccccceeccccccEEEEecC
Confidence 3444555555444444433221 0 11122334443332221 01 000 01112234555554 455
Q ss_pred CCCcEEEEecCCCceeeeeeccCCCCceEEeCC--CCcEEEEecCc-eEEeccCC
Q 036585 238 GDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAP--GSLMFVTGSSE-LSFWIPDL 289 (304)
Q Consensus 238 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~s~~~d-~~iw~~~~ 289 (304)
..+.+.+||..+++.++++. -..+|..++... .+.+|+.-.+| ++||.++.
T Consensus 409 ~tn~lil~D~~s~evvQ~l~-~~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~es 462 (463)
T KOG1645|consen 409 STNELILQDPHSFEVVQTLA-LSEPVLDICPNDTNGSSYLALLTDDRVHIYKNES 462 (463)
T ss_pred CcceeEEeccchhheeeecc-cCcceeecceeecCCcchhhheecceEEEEecCC
Confidence 66789999999999998886 347788777544 35688888888 99998764
No 300
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.11 E-value=5.2e-11 Score=100.41 Aligned_cols=214 Identities=17% Similarity=0.162 Sum_probs=154.8
Q ss_pred eEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccC-ceeeeec
Q 036585 20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-NKYSRYF 98 (304)
Q Consensus 20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~-~~~~~~~ 98 (304)
.++++.+.+.|+.|+..|.|+++++.+|.....+..|..+|+.+.-+.+|..+++.+..+ .-...+|++.+ +.+.+++
T Consensus 1106 c~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S-~PlsaLW~~~s~~~~~Hsf 1184 (1516)
T KOG1832|consen 1106 CIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSS-SPLSALWDASSTGGPRHSF 1184 (1516)
T ss_pred eEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeecccc-CchHHHhccccccCccccc
Confidence 466777889999999999999999999999999999999999999999999988877521 33678999864 4455555
Q ss_pred ccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceE
Q 036585 99 KGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANV 178 (304)
Q Consensus 99 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 178 (304)
. .-.++.|+.....-+.|.......+||+++......+-.... +....-++
T Consensus 1185 ~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~-------------------------~~~y~~n~ 1235 (1516)
T KOG1832|consen 1185 D----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTV-------------------------TSSYSNNL 1235 (1516)
T ss_pred c----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcch-------------------------hhhhhccc
Confidence 4 335788887655445555556789999999877665322111 11122366
Q ss_pred EEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeec
Q 036585 179 VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMS 258 (304)
Q Consensus 179 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 258 (304)
..|+|+..+++ .|| .+||.+..+.++.|... ... ..-.|+|.|.-++.-+ -|||+++.+.+...+.
T Consensus 1236 a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~f---t~~-~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~ 1301 (1516)
T KOG1832|consen 1236 AHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQF---TDY-GGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPS 1301 (1516)
T ss_pred cccCCCcceEe---eCc--eeeeeccHHHHhhhhhh---eec-ccccccCCCceEEeec-----hhhhhHHHHHHhcCcc
Confidence 88999998775 455 48999988877777632 111 2246999999888765 4899999988776643
Q ss_pred cCCCCceEEeCCCCcEEEEec
Q 036585 259 FDTEPPVIKWAPGSLMFVTGS 279 (304)
Q Consensus 259 ~~~~i~~~~~~~~~~~l~s~~ 279 (304)
-. -..+.|+..|..++..-
T Consensus 1302 Ld--qc~VtFNstG~VmYa~~ 1320 (1516)
T KOG1832|consen 1302 LD--QCAVTFNSTGDVMYAML 1320 (1516)
T ss_pred cc--ceEEEeccCccchhhhh
Confidence 32 25677888887665543
No 301
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.11 E-value=5.1e-10 Score=84.57 Aligned_cols=162 Identities=15% Similarity=0.190 Sum_probs=118.5
Q ss_pred EEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCc-----eeeeecccccccE
Q 036585 31 VTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN-----KYSRYFKGHHDRV 105 (304)
Q Consensus 31 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~-----~~~~~~~~~~~~v 105 (304)
++.+.+-.+-+-|++++... .+. ....|.++.|...++.++.|+. +|.|..+|++.+ .+.+.+- |...|
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcR---ngeI~~iDLR~rnqG~~~~a~rly-h~Ssv 301 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCR---NGEIFVIDLRCRNQGNGWCAQRLY-HDSSV 301 (425)
T ss_pred ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEeccc---CCcEEEEEeeecccCCCcceEEEE-cCcch
Confidence 44555666888888876432 333 5568999999999999999999 999999999864 3444444 88999
Q ss_pred EEEEEcC-CCCEEEEcccCCeEEEEeCCccee---eceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCC--CceEE
Q 036585 106 VLLSLCS-SKDCFISGSLDRTVLLWDQRAEKC---QGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDIS--DANVV 179 (304)
Q Consensus 106 ~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~ 179 (304)
+++.... ++++|++.+.+|+|++||++.-++ +..+. +|.. .-.-+
T Consensus 302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe-----------------------------GHvN~~a~l~~ 352 (425)
T KOG2695|consen 302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE-----------------------------GHVNLSAYLPA 352 (425)
T ss_pred hhhhhhccccceEeeccCcCceeEeeehhhhcccceeeee-----------------------------ccccccccccc
Confidence 9998877 788999999999999999997766 33332 2221 22224
Q ss_pred EEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCC-CCCcceEEEEc
Q 036585 180 KFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV-SRNSTLEASFS 227 (304)
Q Consensus 180 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~~~i~~~~~s 227 (304)
-+.+....+++++.|...++|.++.+..+.++..+.. ....+.+++|+
T Consensus 353 ~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 353 HVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred ccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 4566677888899999999999999999988874322 22245555554
No 302
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.09 E-value=8.1e-08 Score=71.29 Aligned_cols=187 Identities=12% Similarity=0.123 Sum_probs=114.1
Q ss_pred eEeecccCcEEEEeeCCCeEEEEecCCcceeeeeccc-------ccceeEEEEccCC------CeEEEEecCCCCCceEE
Q 036585 20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSK-------KYGVDLVCFTSHP------TTVIYSSKNGWDESLRL 86 (304)
Q Consensus 20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~-------~~~v~~~~~~~~~------~~l~~~~~~~~d~~i~v 86 (304)
-+.|+||+.+||.+...|+|+++|+.. ..+..+... ...|..|.|.+.. ..|++... +|.++=
T Consensus 48 kl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y---~G~L~S 123 (282)
T PF15492_consen 48 KLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINY---RGQLRS 123 (282)
T ss_pred EEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEec---cceeee
Confidence 478999999999999999999999875 333333321 2456667775432 14555555 777777
Q ss_pred EEccCc-----eeeeecc---cccccEEEEEEcCCCCEEEEcccCC-----------eEEEEeCCcceeeceEEEeccce
Q 036585 87 LSLHDN-----KYSRYFK---GHHDRVVLLSLCSSKDCFISGSLDR-----------TVLLWDQRAEKCQGLLRVQGRPA 147 (304)
Q Consensus 87 wd~~~~-----~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~ 147 (304)
|-+..+ +...++. .+...|.++.|+|..++|+.|+... -+..|.+-++.+-..........
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~ 203 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDD 203 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcc
Confidence 765322 2223332 2466899999999988888776422 24445444333222111100000
Q ss_pred eEecC-CCeEEEecCCCeEEEEe-cCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEE
Q 036585 148 AAYDD-QGLVFGYEKGPLDIFSV-GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN 212 (304)
Q Consensus 148 ~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 212 (304)
+...+ ...+. .-..++++.. ......|..|..||||+.|++...+|.|.+|++.+-+....+.
T Consensus 204 ~~~~~~~~~~~--~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 204 ITASSKRRGLL--RIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred cccccccccee--eccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 00000 00000 1112333332 2356788999999999999999999999999999887777766
No 303
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.09 E-value=8.5e-08 Score=73.23 Aligned_cols=200 Identities=19% Similarity=0.127 Sum_probs=125.2
Q ss_pred ecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeec-ccc
Q 036585 23 SMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYF-KGH 101 (304)
Q Consensus 23 ~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~-~~~ 101 (304)
...++.++++++.++.+..||..+|+.+.+..... ++.... ...+..++++.. ++.++.+|..+|+..... ...
T Consensus 32 ~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-~~~~~~-~~~~~~v~v~~~---~~~l~~~d~~tG~~~W~~~~~~ 106 (238)
T PF13360_consen 32 AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPG-PISGAP-VVDGGRVYVGTS---DGSLYALDAKTGKVLWSIYLTS 106 (238)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSS-CGGSGE-EEETTEEEEEET---TSEEEEEETTTSCEEEEEEE-S
T ss_pred EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccc-ccccee-eecccccccccc---eeeeEecccCCcceeeeecccc
Confidence 44577888888899999999999999887766422 211111 235666666666 889999999999887763 322
Q ss_pred c---ccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCc-e
Q 036585 102 H---DRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDA-N 177 (304)
Q Consensus 102 ~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~ 177 (304)
. ...........+..++.+..++.|..+|+++++.+........... ..+. ....+ .
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~---------------~~~~----~~~~~~~ 167 (238)
T PF13360_consen 107 SPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS---------------SPIS----SFSDING 167 (238)
T ss_dssp SCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-----------------EE----EETTEEE
T ss_pred ccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCC---------------ccee----eeccccc
Confidence 1 1112222222377888888899999999999998777764321100 0000 00011 1
Q ss_pred EEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceee
Q 036585 178 VVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVA 254 (304)
Q Consensus 178 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~ 254 (304)
.+.+. ++ .+++++.++.+.-+|+.+++.+.... ...... ...+++..|+.++.++.|..||+++++.+-
T Consensus 168 ~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-----~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 168 SPVIS-DG-RVYVSSGDGRVVAVDLATGEKLWSKP-----ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp EEECC-TT-EEEEECCTSSEEEEETTTTEEEEEEC-----SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred ceEEE-CC-EEEEEcCCCeEEEEECCCCCEEEEec-----CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 22222 44 67777777754444999998664221 122222 134677788887799999999999998754
No 304
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.08 E-value=3.9e-07 Score=69.90 Aligned_cols=197 Identities=11% Similarity=0.077 Sum_probs=121.8
Q ss_pred EEEEcc-CCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEc-CCCCEEEEcccCCeEEEEeCCcceeece
Q 036585 62 LVCFTS-HPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLC-SSKDCFISGSLDRTVLLWDQRAEKCQGL 139 (304)
Q Consensus 62 ~~~~~~-~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 139 (304)
++.|.+ ++..+++-.. .+.|..|+..+++... +... . ...+.+. +++ .++.+...+ +.++|+.+++....
T Consensus 4 gp~~d~~~g~l~~~D~~---~~~i~~~~~~~~~~~~-~~~~-~-~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIP---GGRIYRVDPDTGEVEV-IDLP-G-PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETT---TTEEEEEETTTTEEEE-EESS-S-EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEE
T ss_pred ceEEECCCCEEEEEEcC---CCEEEEEECCCCeEEE-EecC-C-CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEE
Confidence 578888 4444444444 8899999998876533 2211 2 6677777 665 455555544 45559888866555
Q ss_pred EEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCC--------CeEEEEEcCCCceeEEE
Q 036585 140 LRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTME--------GHIHVLDSFRGTLLSTY 211 (304)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~~~d~~~~~~~~~~ 211 (304)
....... ......+.+++.|+|++.++.... |.|..++.. ++.....
T Consensus 76 ~~~~~~~------------------------~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~ 130 (246)
T PF08450_consen 76 ADLPDGG------------------------VPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA 130 (246)
T ss_dssp EEEETTC------------------------SCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE
T ss_pred eeccCCC------------------------cccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe
Confidence 4432110 022456889999999966665433 568888876 5544444
Q ss_pred EeCCCCCCcceEEEEcCCCcEEE-EecCCCcEEEEecCCCce----eeee---eccCCCCceEEeCCCCcEEEEecCc--
Q 036585 212 NVKPVSRNSTLEASFSPEGMFVI-SGSGDGSVHAWSVRSGKE----VASW---MSFDTEPPVIKWAPGSLMFVTGSSE-- 281 (304)
Q Consensus 212 ~~~~~~~~~i~~~~~s~~~~~l~-~~~~dg~i~v~d~~~~~~----~~~~---~~~~~~i~~~~~~~~~~~l~s~~~d-- 281 (304)
. .-...+.++|+|+++.|+ +-+..+.|..+++..... ...+ ....+..-.+++..+|++.++.-..
T Consensus 131 ~----~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~ 206 (246)
T PF08450_consen 131 D----GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGR 206 (246)
T ss_dssp E----EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTE
T ss_pred c----CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCE
Confidence 3 345567899999998776 456778899999863221 1222 2222236789999999877664333
Q ss_pred eEEeccCCcccccc
Q 036585 282 LSFWIPDLSKLGAY 295 (304)
Q Consensus 282 ~~iw~~~~~~~~~~ 295 (304)
|.+++.+.+.+..+
T Consensus 207 I~~~~p~G~~~~~i 220 (246)
T PF08450_consen 207 IVVFDPDGKLLREI 220 (246)
T ss_dssp EEEEETTSCEEEEE
T ss_pred EEEECCCccEEEEE
Confidence 88888886655443
No 305
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.07 E-value=2.7e-09 Score=88.55 Aligned_cols=229 Identities=18% Similarity=0.202 Sum_probs=153.2
Q ss_pred cceeeeecceeeEeecccCcEEEEeeCCCeEEEEecCCc-ceeeeecc-cccceeEEEEccCCC--eEEEEecCCCCCce
Q 036585 9 EDKVSLELSEEILQSMEVGIYLVTASDDESIRLYDVTAA-TCLKTINS-KKYGVDLVCFTSHPT--TVIYSSKNGWDESL 84 (304)
Q Consensus 9 ~~~~~~~~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~-~~~~~~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~d~~i 84 (304)
...+.+.+.-+.+...|.|+-+|.++.-| +.+.|+... .+.+-+.. ..-.|-...|+|+.. +-++... ...-
T Consensus 18 slsl~v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts---~qka 93 (1081)
T KOG0309|consen 18 SLSLKVDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTS---NQKA 93 (1081)
T ss_pred eeEEEecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecC---cchh
Confidence 34455566677889999999999999887 666676642 33222221 112466778887654 3333333 5566
Q ss_pred EEEEccCc---eeeeecccccccEEEEEEcCCC-CEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEec
Q 036585 85 RLLSLHDN---KYSRYFKGHHDRVVLLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYE 160 (304)
Q Consensus 85 ~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (304)
.+|++... .....+.+|...|+.+.|+|+. ..+++++.|-.+..||+++.....-.
T Consensus 94 iiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys-------------------- 153 (1081)
T KOG0309|consen 94 IIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYS-------------------- 153 (1081)
T ss_pred hhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceee--------------------
Confidence 68988542 3344566899999999999854 58999999999999999875432111
Q ss_pred CCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCC-ceeEEEEeCCCCCCcceEEEEcC-CCcEEEEecC
Q 036585 161 KGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG-TLLSTYNVKPVSRNSTLEASFSP-EGMFVISGSG 238 (304)
Q Consensus 161 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~ 238 (304)
...-......++|+-....+.+.+....|++||++.| .++..++ .+-..++.+.|.. -...+.+.+.
T Consensus 154 --------~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K---~~vs~vn~~~fnr~~~s~~~s~~~ 222 (1081)
T KOG0309|consen 154 --------TSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLK---GHVSSVNSIDFNRFKYSEIMSSSN 222 (1081)
T ss_pred --------eecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEec---ccceeeehHHHhhhhhhhhcccCC
Confidence 1112245566888876666677777788999999876 4556666 4677777787765 2346788999
Q ss_pred CCcEEEEecCCCce-eeeeeccCCCCceEEeCCCC
Q 036585 239 DGSVHAWSVRSGKE-VASWMSFDTEPPVIKWAPGS 272 (304)
Q Consensus 239 dg~i~v~d~~~~~~-~~~~~~~~~~i~~~~~~~~~ 272 (304)
|++|++||...... .........+|..-.+-|-|
T Consensus 223 d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg 257 (1081)
T KOG0309|consen 223 DGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFG 257 (1081)
T ss_pred CCceeeecccccccccceeccccCcceeccccccC
Confidence 99999999865432 22223345667666666643
No 306
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=7.5e-08 Score=80.69 Aligned_cols=101 Identities=12% Similarity=0.130 Sum_probs=79.4
Q ss_pred EEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEe---------cCCCcEEEEecCCCcee--ee
Q 036585 187 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG---------SGDGSVHAWSVRSGKEV--AS 255 (304)
Q Consensus 187 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~---------~~dg~i~v~d~~~~~~~--~~ 255 (304)
++++|...|+|.++|+.++.....+. .|...|.++.|-....++-.+ +.-+.+.+-|+++|... +.
T Consensus 439 LvAvGT~sGTV~vvdvst~~v~~~fs---vht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~ 515 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTNAVAASFS---VHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRG 515 (1062)
T ss_pred eEEeecCCceEEEEEecchhhhhhhc---ccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEccccccccccc
Confidence 67889999999999999999888888 688899999997766554333 22346888899987542 22
Q ss_pred e-eccCCCCceEEeCCCCcEEEEecCc--eEEeccCCc
Q 036585 256 W-MSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLS 290 (304)
Q Consensus 256 ~-~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~ 290 (304)
+ .....+|+.+..+..++||+..-.+ +.+|+....
T Consensus 516 l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~ 553 (1062)
T KOG1912|consen 516 LQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTL 553 (1062)
T ss_pred CCCCCcCcceeeeecccCceEEEEecccchHHHhhccc
Confidence 2 3456789999999999999999988 999998543
No 307
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.04 E-value=8.3e-10 Score=58.05 Aligned_cols=39 Identities=31% Similarity=0.586 Sum_probs=36.6
Q ss_pred ceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEe
Q 036585 92 NKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWD 130 (304)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 130 (304)
++++.++.+|.+.|.+++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357788999999999999999999999999999999997
No 308
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.04 E-value=5.1e-07 Score=74.30 Aligned_cols=218 Identities=13% Similarity=0.099 Sum_probs=131.7
Q ss_pred cCcEEEEeeCCCeEEEEecCCcceeeeeccccc-ce-e-----EEE--EccCCCeEEEEecCCCCCceEEEEccCceeee
Q 036585 26 VGIYLVTASDDESIRLYDVTAATCLKTINSKKY-GV-D-----LVC--FTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR 96 (304)
Q Consensus 26 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~-~v-~-----~~~--~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~ 96 (304)
.+..+++++.++.+.-+|.++|+.+-+...... .. . .+. ..-.+..++.++. ++.+.-+|.++|+.+.
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~---~g~l~ald~~tG~~~W 144 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE---KGQVYALNAEDGEVAW 144 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC---CCEEEEEECCCCCCcc
Confidence 367888888889999999999988765543220 00 0 000 0114566777776 8999999999999877
Q ss_pred ecccccccEEE-EEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecc-------ceeEecCCCeEEEecCCCeEEEE
Q 036585 97 YFKGHHDRVVL-LSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-------PAAAYDDQGLVFGYEKGPLDIFS 168 (304)
Q Consensus 97 ~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 168 (304)
..+... .+.+ ... .+..++.+..++.+..+|.++++.......... .......+..++...++.+..++
T Consensus 145 ~~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d 221 (394)
T PRK11138 145 QTKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVL 221 (394)
T ss_pred cccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEE
Confidence 665332 2221 111 234677778889999999999998877654311 11112222333444444433332
Q ss_pred ecCC---------CC-------CceEEEEec--CCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCC
Q 036585 169 VGGD---------IS-------DANVVKFSN--DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG 230 (304)
Q Consensus 169 ~~~~---------~~-------~v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 230 (304)
.... .. ....+..+| .+..+++++.+|.+..+|..+|+.+.+.... . ...+. .++
T Consensus 222 ~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~----~-~~~~~--~~~ 294 (394)
T PRK11138 222 MEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG----S-VNDFA--VDG 294 (394)
T ss_pred ccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC----C-ccCcE--EEC
Confidence 2210 00 000111222 3456777788999999999999887665421 1 11122 245
Q ss_pred cEEEEecCCCcEEEEecCCCceeeee
Q 036585 231 MFVISGSGDGSVHAWSVRSGKEVASW 256 (304)
Q Consensus 231 ~~l~~~~~dg~i~v~d~~~~~~~~~~ 256 (304)
..++.++.+|.+..+|..+++.+-..
T Consensus 295 ~~vy~~~~~g~l~ald~~tG~~~W~~ 320 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRGGVELWSQ 320 (394)
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEcc
Confidence 67888888999999999999875543
No 309
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.03 E-value=3.8e-09 Score=76.89 Aligned_cols=154 Identities=16% Similarity=0.141 Sum_probs=96.9
Q ss_pred ecccCcEEEEeeCCCeEEEEecCCcce-eeeecccccceeEEEEccCCCeEEEEecCC--CCCceEEEEccCceeeeecc
Q 036585 23 SMEVGIYLVTASDDESIRLYDVTAATC-LKTINSKKYGVDLVCFTSHPTTVIYSSKNG--WDESLRLLSLHDNKYSRYFK 99 (304)
Q Consensus 23 ~~~~~~~l~~~~~d~~i~vw~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~--~d~~i~vwd~~~~~~~~~~~ 99 (304)
++..++.++++..||.+.+.+.+.... ...+..-...-.+.+....++.+.++.... .-+..+.|+++..+....-.
T Consensus 97 ~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~ 176 (319)
T KOG4714|consen 97 CTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK 176 (319)
T ss_pred ccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccc
Confidence 334478899999999999999765211 111111111222233334555555544210 03455566665433222212
Q ss_pred cccccEEEEEEcC-CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceE
Q 036585 100 GHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANV 178 (304)
Q Consensus 100 ~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 178 (304)
.-...|.+++-+| +.+.+++|+.||.+-+||.+.......+ +..|+.++..
T Consensus 177 ~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~----------------------------l~ahk~~i~e 228 (319)
T KOG4714|consen 177 KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSL----------------------------LKAHKAEIWE 228 (319)
T ss_pred cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHH----------------------------HHHhhhhhhh
Confidence 2233589999998 4557788899999999999876432221 1257788999
Q ss_pred EEEec-CCcEEEEeeCCCeEEEEEcCC
Q 036585 179 VKFSN-DGRLMLLTTMEGHIHVLDSFR 204 (304)
Q Consensus 179 ~~~~~-~~~~l~~~~~dg~i~~~d~~~ 204 (304)
+-|+| ++..|++++.||.+..||..+
T Consensus 229 V~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 229 VHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeccCCCchheeEecCCCcEEEEcCCC
Confidence 99999 567899999999999999653
No 310
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=3.5e-08 Score=82.81 Aligned_cols=181 Identities=10% Similarity=0.128 Sum_probs=129.9
Q ss_pred cceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceee
Q 036585 58 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 137 (304)
Q Consensus 58 ~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 137 (304)
..+.|+++ .++.++.|+. +|.|++++....- .+...|... ..+|.++++|+.||+|.|-.+-+.+..
T Consensus 40 D~is~~av--~~~~~~~GtH---~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 40 DAISCCAV--HDKFFALGTH---RGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred hHHHHHHh--hcceeeeccc---cceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCccc
Confidence 35666666 5788999998 9999999876432 333335443 558999999999999999988877766
Q ss_pred ceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecC-----CcEEEEeeCCCeEEEEEcCCCcee--EE
Q 036585 138 GLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSND-----GRLMLLTTMEGHIHVLDSFRGTLL--ST 210 (304)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~~~d~~~~~~~--~~ 210 (304)
..+... .++.+++++|+ .+.+++|+..| +.++.-+--... ..
T Consensus 107 ~~~df~------------------------------rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~ 155 (846)
T KOG2066|consen 107 TQYDFK------------------------------RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVV 155 (846)
T ss_pred eeEecC------------------------------CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcccee
Confidence 555432 57788999997 46799999988 777763211111 12
Q ss_pred EEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCC------CceEEeCCCCcEEEEecCceEE
Q 036585 211 YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTE------PPVIKWAPGSLMFVTGSSELSF 284 (304)
Q Consensus 211 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~------i~~~~~~~~~~~l~s~~~d~~i 284 (304)
.. ...++|.++.| .|+++|-++.+| |+|||+.+.+.+..++..... ...+.|.++.+.++--+..|+|
T Consensus 156 l~---~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i 229 (846)
T KOG2066|consen 156 LS---EGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKI 229 (846)
T ss_pred ee---cCccceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEE
Confidence 22 47789999999 577999998777 999999988877666433222 3567888777666655555777
Q ss_pred eccC
Q 036585 285 WIPD 288 (304)
Q Consensus 285 w~~~ 288 (304)
..+.
T Consensus 230 ~~I~ 233 (846)
T KOG2066|consen 230 CSIK 233 (846)
T ss_pred EEEe
Confidence 7765
No 311
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.03 E-value=2.9e-10 Score=96.03 Aligned_cols=196 Identities=18% Similarity=0.259 Sum_probs=144.6
Q ss_pred ceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCC--e
Q 036585 48 TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDR--T 125 (304)
Q Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~ 125 (304)
+...++..|+...+|++|+-+.++|+.|+. .|.|+++++.+|........|..+|+-+.-+.+|..+++.+.-. .
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~---~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSH---AGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeec---cceEEEEEccCccccccccccccccccccccCCcceeeeeccccCch
Confidence 345567778889999999999999999999 99999999999999999999999999999988998776654322 4
Q ss_pred EEEEeCCc-ceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCC
Q 036585 126 VLLWDQRA-EKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR 204 (304)
Q Consensus 126 i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 204 (304)
..+|++.. +.....+ ..-.++.|+..-+.-+.|+......+||+.+
T Consensus 1169 saLW~~~s~~~~~Hsf---------------------------------~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT 1215 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSF---------------------------------DEDKAVKFSNSLQFRALGTEADDALLYDVQT 1215 (1516)
T ss_pred HHHhccccccCccccc---------------------------------cccceeehhhhHHHHHhcccccceEEEeccc
Confidence 67888764 2222222 2345688887766667777777899999999
Q ss_pred CceeEEEEe-CCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCceE
Q 036585 205 GTLLSTYNV-KPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSELS 283 (304)
Q Consensus 205 ~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~ 283 (304)
+.++.++-. .......-+...|+|+..+++ .|| .+||.+..+.+..+......+ .=.|+|.|..++.-+.
T Consensus 1216 ~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINSE--- 1286 (1516)
T KOG1832|consen 1216 CSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINSE--- 1286 (1516)
T ss_pred CcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeech---
Confidence 988777432 112223346788999998887 566 589999887777775444222 2359999988776553
Q ss_pred EeccC
Q 036585 284 FWIPD 288 (304)
Q Consensus 284 iw~~~ 288 (304)
||++.
T Consensus 1287 IwD~R 1291 (1516)
T KOG1832|consen 1287 IWDMR 1291 (1516)
T ss_pred hhhhH
Confidence 55543
No 312
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.02 E-value=1e-06 Score=67.43 Aligned_cols=211 Identities=12% Similarity=0.119 Sum_probs=137.3
Q ss_pred ceeEEEEccCCC-eEEEEecCCCCCceEEEEccCceeeeecccccccE--EEEEEcCCCCEEEEcc-----cCCeEEEEe
Q 036585 59 GVDLVCFTSHPT-TVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRV--VLLSLCSSKDCFISGS-----LDRTVLLWD 130 (304)
Q Consensus 59 ~v~~~~~~~~~~-~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~-----~dg~i~iwd 130 (304)
....++.+|... .++.+-.. .....+||..+++....+....+.- =.-.|++||++|++.- ..|.|-+||
T Consensus 6 RgH~~a~~p~~~~avafaRRP--G~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRP--GTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred cccceeeCCCCCeEEEEEeCC--CcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence 345688888544 44555442 4567889999998877765433322 1367999999999864 357899999
Q ss_pred CC-cceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEee-----------------
Q 036585 131 QR-AEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT----------------- 192 (304)
Q Consensus 131 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------------- 192 (304)
.+ +.+.+..+...+ -....+.+.|||+.|+++.
T Consensus 84 ~~~~~~ri~E~~s~G-----------------------------IGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~ 134 (305)
T PF07433_consen 84 AARGYRRIGEFPSHG-----------------------------IGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLD 134 (305)
T ss_pred CcCCcEEEeEecCCC-----------------------------cChhhEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence 98 444444444322 2334466667776565542
Q ss_pred -CCCeEEEEEcCCCceeEEEEeCC-CCCCcceEEEEcCCCcEEEEecCCC-------cEEEEecCCCceeeee-------
Q 036585 193 -MEGHIHVLDSFRGTLLSTYNVKP-VSRNSTLEASFSPEGMFVISGSGDG-------SVHAWSVRSGKEVASW------- 256 (304)
Q Consensus 193 -~dg~i~~~d~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg-------~i~v~d~~~~~~~~~~------- 256 (304)
.+..+.+.|..+|+.+......+ .+...+.-+++.++|..++..-..| .|.+++.. +.+..+
T Consensus 135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~ 212 (305)
T PF07433_consen 135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQW 212 (305)
T ss_pred hcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHH
Confidence 34457778889999888866432 3667899999999997776654433 24455432 222222
Q ss_pred eccCCCCceEEeCCCCcEEEEecCc---eEEeccCCccccccccCCCCC
Q 036585 257 MSFDTEPPVIKWAPGSLMFVTGSSE---LSFWIPDLSKLGAYVGRNRGC 302 (304)
Q Consensus 257 ~~~~~~i~~~~~~~~~~~l~s~~~d---~~iw~~~~~~~~~~~~~~~g~ 302 (304)
....+.+-+|++++++.+++..+-. +.+|+.....+.....-.++|
T Consensus 213 ~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~c 261 (305)
T PF07433_consen 213 RRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDAC 261 (305)
T ss_pred HhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCcee
Confidence 2345678899999999988877765 889988776665444444443
No 313
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=99.02 E-value=1e-07 Score=83.57 Aligned_cols=221 Identities=12% Similarity=0.128 Sum_probs=139.2
Q ss_pred cceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceee
Q 036585 58 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 137 (304)
Q Consensus 58 ~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 137 (304)
..|.++.|..+...++.+.. .|.|.+-|.++.... ....-...|.+++|+||++.++..+..+++.+-+- +..++
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~---~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i 143 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITA---LGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPI 143 (1265)
T ss_pred cceEEEEEecccceEEEEec---CCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccch
Confidence 57999999999999999988 999999988776432 23335678999999999999998888888776432 11111
Q ss_pred ceEEE-------eccceeEecCCCeEEEecCCCeEEEEecC---------CCCCceEEEEecCCcEEEEee-----CCCe
Q 036585 138 GLLRV-------QGRPAAAYDDQGLVFGYEKGPLDIFSVGG---------DISDANVVKFSNDGRLMLLTT-----MEGH 196 (304)
Q Consensus 138 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~-----~dg~ 196 (304)
..... .....+-|......+....+......... ..+.=+.+.|--||+++++.. ....
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 11111 11112222222222222222111111111 112234589999999999842 3378
Q ss_pred EEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEec---CCCcEEEEecCCCceee----eeeccCCCCceEEeC
Q 036585 197 IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS---GDGSVHAWSVRSGKEVA----SWMSFDTEPPVIKWA 269 (304)
Q Consensus 197 i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~v~d~~~~~~~~----~~~~~~~~i~~~~~~ 269 (304)
|++||.+ |..-..-. ...+.-.+++|-|.|..+++-. .|+.|.+|.- +|-... .++....++..++|+
T Consensus 224 irV~drE-g~Lns~se---~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wn 298 (1265)
T KOG1920|consen 224 IRVYDRE-GALNSTSE---PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWN 298 (1265)
T ss_pred EEEeccc-chhhcccC---cccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeec
Confidence 9999966 54433332 2334455799999999998863 5667999984 443333 233344559999999
Q ss_pred CCCcEEEE---ecCc--eEEeccC
Q 036585 270 PGSLMFVT---GSSE--LSFWIPD 288 (304)
Q Consensus 270 ~~~~~l~s---~~~d--~~iw~~~ 288 (304)
.++..|+. .... +++|...
T Consensus 299 s~sdiLAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 299 SNSDILAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred CCCCceeeeecccccceEEEEEec
Confidence 99999988 3333 8888653
No 314
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.01 E-value=1.6e-06 Score=63.82 Aligned_cols=253 Identities=13% Similarity=0.050 Sum_probs=134.9
Q ss_pred cCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccE
Q 036585 26 VGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRV 105 (304)
Q Consensus 26 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v 105 (304)
-|++++.|...|.+.+.+.++|.....+.....--......+++..+..++. |+..+..|..+..++...+-..+-.
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgsh---d~~~yalD~~~~~cVykskcgG~~f 138 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSH---DGNFYALDPKTYGCVYKSKCGGGTF 138 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecC---CCcEEEecccccceEEecccCCcee
Confidence 4889999999999999999999887766644322223345678889999998 9999999999988887766433333
Q ss_pred EEEEEcCCCCEEEEcccCCeEEEEeCCcce--eeceEEEe----------ccceeEecCCCeEEEecCCCeEEEEecCCC
Q 036585 106 VLLSLCSSKDCFISGSLDRTVLLWDQRAEK--CQGLLRVQ----------GRPAAAYDDQGLVFGYEKGPLDIFSVGGDI 173 (304)
Q Consensus 106 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (304)
.+-+..|-...|+.+...|.+.--...... ........ +.......-+|.+..++...-.+|......
T Consensus 139 ~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~sG~qvwr~~t~G 218 (354)
T KOG4649|consen 139 VSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDESGRQVWRPATKG 218 (354)
T ss_pred ccceecCCCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEcCCCcEEEeecCCC
Confidence 444555522334444444554443433321 11111100 111122234555666655556666543221
Q ss_pred CCceEEEEe-cCCcEEEEeeCCCe--------EEEEEcCCCceeEEEEeCCCCCCcceEEEEc-C---CCcEEEEecCCC
Q 036585 174 SDANVVKFS-NDGRLMLLTTMEGH--------IHVLDSFRGTLLSTYNVKPVSRNSTLEASFS-P---EGMFVISGSGDG 240 (304)
Q Consensus 174 ~~v~~~~~~-~~~~~l~~~~~dg~--------i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s-~---~~~~l~~~~~dg 240 (304)
.-...-+.+ |..+.+..+..+.. -.+|..++|.....+..+. ...+++ | ..++|..++.||
T Consensus 219 pIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~------l~F~~h~~~~S~~~ll~~~s~dg 292 (354)
T KOG4649|consen 219 PIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSPK------LRFDLHSPGISYPKLLRRSSGDG 292 (354)
T ss_pred ceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCcc------cceeccCCCCcchhhhhhhcCCC
Confidence 111111111 33233333333322 2356666664444433111 012221 1 245677888999
Q ss_pred cEEEEecCCCceeeeeeccCCCCceEE--------e-CC---CCcEEEEecCc-eEEeccCC
Q 036585 241 SVHAWSVRSGKEVASWMSFDTEPPVIK--------W-AP---GSLMFVTGSSE-LSFWIPDL 289 (304)
Q Consensus 241 ~i~v~d~~~~~~~~~~~~~~~~i~~~~--------~-~~---~~~~l~s~~~d-~~iw~~~~ 289 (304)
.+.|.-.+ +.+.+...|.+.+..+. | +| +|++|+.+-+| ++-|+++.
T Consensus 293 kv~il~~~--~sl~~~~s~~g~lq~~~~~el~~eIFsSPvii~grl~igcRDdYv~cldl~~ 352 (354)
T KOG4649|consen 293 KVMILMTS--KSLAEISSNGGELQNLEAIELSNEIFSSPVIIDGRLLIGCRDDYVRCLDLDT 352 (354)
T ss_pred cEEEEEec--ccccccccCCCccceEEEeecCcccccCCeEEccEEEEEEccCeEEEEeccc
Confidence 88887433 22333333433332222 2 23 56666655555 88888764
No 315
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=9.1e-08 Score=81.00 Aligned_cols=206 Identities=15% Similarity=0.180 Sum_probs=135.5
Q ss_pred EEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccccccc-EEEEEEcCCCCEEEEcccCC-----eEEEEeCCccee
Q 036585 63 VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDR-VVLLSLCSSKDCFISGSLDR-----TVLLWDQRAEKC 136 (304)
Q Consensus 63 ~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~ 136 (304)
-+|++.+..++.|+. +|.|.+++-. -+.++.++.+... |..+....+..+|++.+.|+ .+++|+++.-..
T Consensus 29 sc~~s~~~~vvigt~---~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTA---DGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred eEEcCCCceEEEeec---cccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence 467888999999998 8988777632 3444777777766 44443334446777766554 599999875432
Q ss_pred eceEEEeccceeEecCCCeEEEecCCCeEEEEec--CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcC---CCceeEEE
Q 036585 137 QGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVG--GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF---RGTLLSTY 211 (304)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~---~~~~~~~~ 211 (304)
...- .++ +..+++... ....++.+++.+.+-+.+|+|-.+|.|..+.-. .... +.
T Consensus 105 n~sP-----~c~-------------~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs--r~ 164 (933)
T KOG2114|consen 105 NNSP-----QCL-------------YEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS--RQ 164 (933)
T ss_pred CCCc-----cee-------------eeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc--ce
Confidence 1100 000 000112111 235788999999999999999999999998632 1111 11
Q ss_pred EeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCce-eeeeeccCCCCceEEeCCCCcEEEEecCc-eEEeccCC
Q 036585 212 NVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKE-VASWMSFDTEPPVIKWAPGSLMFVTGSSE-LSFWIPDL 289 (304)
Q Consensus 212 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~~~ 289 (304)
........+|+.+++..+++-++-+..-..|.+|.+....+ ...+..|..+++|..|++....+++++.. +.+|+.+.
T Consensus 165 ~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~ 244 (933)
T KOG2114|consen 165 DYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDG 244 (933)
T ss_pred eeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCC
Confidence 11224678999999999888733333345699999974443 45577888899999999877756666666 99999886
Q ss_pred ccc
Q 036585 290 SKL 292 (304)
Q Consensus 290 ~~~ 292 (304)
...
T Consensus 245 ~~~ 247 (933)
T KOG2114|consen 245 RGP 247 (933)
T ss_pred cce
Confidence 554
No 316
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=3.9e-08 Score=83.22 Aligned_cols=112 Identities=9% Similarity=0.087 Sum_probs=91.5
Q ss_pred cceeeEeecccCcEEEEee----CCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccC
Q 036585 16 LSEEILQSMEVGIYLVTAS----DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD 91 (304)
Q Consensus 16 ~~~~~i~~~~~~~~l~~~~----~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~ 91 (304)
..+.+.+|+|...++|+++ ..|+|.||- ++|++-+....+ -.+.+++|+|..-.|+.+-. -|.+.+|...+
T Consensus 16 avsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P-~hatSLCWHpe~~vLa~gwe---~g~~~v~~~~~ 90 (1416)
T KOG3617|consen 16 AVSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYP-VHATSLCWHPEEFVLAQGWE---MGVSDVQKTNT 90 (1416)
T ss_pred ccccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccc-eehhhhccChHHHHHhhccc---cceeEEEecCC
Confidence 3455678999999999887 457898884 667654433322 23567999999988888887 89999999988
Q ss_pred ceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCC
Q 036585 92 NKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQR 132 (304)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 132 (304)
.+.......|+.+|..+.|+|+|..++++..-|.+.+|...
T Consensus 91 ~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 91 TETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 88777777899999999999999999999999999999876
No 317
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=1.5e-07 Score=79.70 Aligned_cols=210 Identities=11% Similarity=0.099 Sum_probs=136.0
Q ss_pred eeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccc-eeEEEEccCCCeEEEEecCCC-CC-ceEEEEccCc---
Q 036585 19 EILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYG-VDLVCFTSHPTTVIYSSKNGW-DE-SLRLLSLHDN--- 92 (304)
Q Consensus 19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~~~~-d~-~i~vwd~~~~--- 92 (304)
.+-.+++.+..++.|+.+|.|.+.+ ...+.++.++.+... |..+-...+...|++.+.+.. +- .+++|+++.-
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 4455677889999999999998887 335555778877766 555554445567887776311 12 6999999643
Q ss_pred ---eee---eecc----cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCC
Q 036585 93 ---KYS---RYFK----GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKG 162 (304)
Q Consensus 93 ---~~~---~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (304)
+++ +.+. ....++.+++.+.+-+.+++|-.+|.|..+.-.--+.... +
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs-r--------------------- 163 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS-R--------------------- 163 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc-c---------------------
Confidence 222 1111 1345789999999999999999999999885321110000 0
Q ss_pred CeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcE
Q 036585 163 PLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSV 242 (304)
Q Consensus 163 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 242 (304)
.-.......+|+.+++..+++.++.......|.+|.+....+. ......++..+.|..|++....+++++. ..+
T Consensus 164 ---~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~--~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l 237 (933)
T KOG2114|consen 164 ---QDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPS--LKVLDNNGISLNCSSFSDGTYQFICAGS-EFL 237 (933)
T ss_pred ---eeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcc--eeeeccCCccceeeecCCCCccEEEecC-ceE
Confidence 0001124478999999999987444444558999998743322 2222257788999999886654555543 459
Q ss_pred EEEecCCCceeeeee
Q 036585 243 HAWSVRSGKEVASWM 257 (304)
Q Consensus 243 ~v~d~~~~~~~~~~~ 257 (304)
.+|+....++-..+.
T Consensus 238 ~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 238 YFYDSDGRGPCFAFE 252 (933)
T ss_pred EEEcCCCcceeeeec
Confidence 999987655544443
No 318
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=6.2e-08 Score=76.10 Aligned_cols=211 Identities=14% Similarity=0.166 Sum_probs=141.1
Q ss_pred eecccCcEEEEeeC-CCeEEEEecCCcceeeeecccccceeEEEEcc-CC--C-eEEEEecCCCCCceEEEEccCce--e
Q 036585 22 QSMEVGIYLVTASD-DESIRLYDVTAATCLKTINSKKYGVDLVCFTS-HP--T-TVIYSSKNGWDESLRLLSLHDNK--Y 94 (304)
Q Consensus 22 ~~~~~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~--~-~l~~~~~~~~d~~i~vwd~~~~~--~ 94 (304)
..+.+|.++.|.+. |..++++|+++-..+.-++... ....+.|.. .| . .+++.... ++.+.++|-.... .
T Consensus 60 ~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~-lPg~a~wv~skGd~~s~IAVs~~~--sg~i~VvD~~~d~~q~ 136 (558)
T KOG0882|consen 60 AVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVD-LPGFAEWVTSKGDKISLIAVSLFK--SGKIFVVDGFGDFCQD 136 (558)
T ss_pred hccccceeEeeccCcccceeEEEeeccchhhhccccc-CCCceEEecCCCCeeeeEEeeccc--CCCcEEECCcCCcCcc
Confidence 34456888888777 9999999998765543333221 111223322 22 1 34444443 8999999976543 2
Q ss_pred eeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCc-ce-----eeceEEEeccceeEecCCCeEEEecCCCeEEEE
Q 036585 95 SRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRA-EK-----CQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFS 168 (304)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (304)
...-.-|..+|.++.++|-+..+++....|.|.-|..+. .+ ....++.. -.++.
T Consensus 137 ~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~e--------------------TdLy~ 196 (558)
T KOG0882|consen 137 GYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHE--------------------TDLYG 196 (558)
T ss_pred ceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCcccccccccccc--------------------chhhc
Confidence 333346999999999999999999999999999998763 11 11111111 11222
Q ss_pred ecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeC------------------------------CCCC
Q 036585 169 VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK------------------------------PVSR 218 (304)
Q Consensus 169 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~------------------------------~~~~ 218 (304)
.........++.|+|++..+.+-+.|..|+++++++++....+... ....
T Consensus 197 f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~ 276 (558)
T KOG0882|consen 197 FPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGS 276 (558)
T ss_pred ccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcC
Confidence 3344567789999999999999999999999999998766554310 0011
Q ss_pred CcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeee
Q 036585 219 NSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASW 256 (304)
Q Consensus 219 ~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 256 (304)
..-+.+.|...|++|+-|+-=| |++.++.+++..+.+
T Consensus 277 ~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 277 TVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred cccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 2334578999999999988766 899999888765544
No 319
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.95 E-value=2.8e-07 Score=77.03 Aligned_cols=226 Identities=12% Similarity=0.043 Sum_probs=136.7
Q ss_pred eecceeeEeecccCcEEEE-eeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCC-CCceEEEEccC
Q 036585 14 LELSEEILQSMEVGIYLVT-ASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW-DESLRLLSLHD 91 (304)
Q Consensus 14 ~~~~~~~i~~~~~~~~l~~-~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-d~~i~vwd~~~ 91 (304)
+...+-.+-+.++|+.+.. .-..+.+.+.|.++.+...++.-.. ....++++|+++++++.+.+.. ..++...+..+
T Consensus 191 ~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e 269 (635)
T PRK02888 191 FCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE 269 (635)
T ss_pred EeCcccccccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeecccc
Confidence 3334445556667876543 3345678889999888777766544 4567899999999999874211 22333333222
Q ss_pred ceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCc-----ceeeceEEEeccceeEecCCCeEEEecCCCeEE
Q 036585 92 NKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRA-----EKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDI 166 (304)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (304)
......+.- ..+ -++.++|++...+ ++.|.+.|.++ ......+...
T Consensus 270 ~d~~vvfni--~~i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVG----------------------- 320 (635)
T PRK02888 270 RDWVVVFNI--ARI--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVP----------------------- 320 (635)
T ss_pred CceEEEEch--HHH--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECC-----------------------
Confidence 111111110 000 1334577766653 57899999887 3333333322
Q ss_pred EEecCCCCCceEEEEecCCcEEEEeeC-CCeEEEEEcCCCce------------eEEEEeCCCCCCcceEEEEcCCCcEE
Q 036585 167 FSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFRGTL------------LSTYNVKPVSRNSTLEASFSPEGMFV 233 (304)
Q Consensus 167 ~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~------------~~~~~~~~~~~~~i~~~~~s~~~~~l 233 (304)
.....+.++|||+++++++. +.++.++|+.+.+. ..+.. -.......+|+++|+..
T Consensus 321 -------KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve----vGlGPLHTaFDg~G~ay 389 (635)
T PRK02888 321 -------KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE----LGLGPLHTAFDGRGNAY 389 (635)
T ss_pred -------CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec----cCCCcceEEECCCCCEE
Confidence 34567999999999887654 88999999987553 22322 22333447899999877
Q ss_pred EEecCCCcEEEEecCC----------CceeeeeeccCCC-----CceEEeCCCCcEEEEecC
Q 036585 234 ISGSGDGSVHAWSVRS----------GKEVASWMSFDTE-----PPVIKWAPGSLMFVTGSS 280 (304)
Q Consensus 234 ~~~~~dg~i~v~d~~~----------~~~~~~~~~~~~~-----i~~~~~~~~~~~l~s~~~ 280 (304)
.+-.-|..|..||+.. ...+..+.-|-.+ ..+=.-.|||++|++...
T Consensus 390 tslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 390 TTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred EeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 7778899999999875 2234444333222 112223578888877643
No 320
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.95 E-value=8.2e-06 Score=63.41 Aligned_cols=232 Identities=14% Similarity=0.142 Sum_probs=137.2
Q ss_pred eEeecccCcEEEEee----------CCCeEEEEecCCcceeeeeccccc-------ceeEEEEccCCCeEEEEecCCCCC
Q 036585 20 ILQSMEVGIYLVTAS----------DDESIRLYDVTAATCLKTINSKKY-------GVDLVCFTSHPTTVIYSSKNGWDE 82 (304)
Q Consensus 20 ~i~~~~~~~~l~~~~----------~d~~i~vw~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~~~~~d~ 82 (304)
.+..+|+++.+++++ ..-.|.+||.++..+...+.-... ....++++.+++++++.... .-.
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~T-Pa~ 118 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFT-PAT 118 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEES-SSE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccC-CCC
Confidence 356789999888764 233589999999887765543321 23346788899888876542 267
Q ss_pred ceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCC-cceeeceEEE----eccce---eEec-C-
Q 036585 83 SLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQR-AEKCQGLLRV----QGRPA---AAYD-D- 152 (304)
Q Consensus 83 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~----~~~~~---~~~~-~- 152 (304)
+|.|.|+..++.+..+.. .+. ..+-=+ ...-|.+-+.||.+.-..+. .++....... ...+. ..+. .
T Consensus 119 SVtVVDl~~~kvv~ei~~-PGC-~~iyP~-~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~ 195 (342)
T PF06433_consen 119 SVTVVDLAAKKVVGEIDT-PGC-WLIYPS-GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDG 195 (342)
T ss_dssp EEEEEETTTTEEEEEEEG-TSE-EEEEEE-ETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTT
T ss_pred eEEEEECCCCceeeeecC-CCE-EEEEec-CCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCC
Confidence 899999999888776652 221 111111 22357777889998888887 3443321110 01111 1111 1
Q ss_pred CCeEEEecCCCeEEEEecCC---------------------CCCceEEEEecCCcEEEEeeC---CC-------eEEEEE
Q 036585 153 QGLVFGYEKGPLDIFSVGGD---------------------ISDANVVKFSNDGRLMLLTTM---EG-------HIHVLD 201 (304)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~---------------------~~~v~~~~~~~~~~~l~~~~~---dg-------~i~~~d 201 (304)
+..++..-.|.+...++.+. .+....+++++..+.|++--. +| .|.+||
T Consensus 196 ~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D 275 (342)
T PF06433_consen 196 GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYD 275 (342)
T ss_dssp TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEE
T ss_pred CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEE
Confidence 12333333444444333332 234455778776555554221 22 489999
Q ss_pred cCCCceeEEEEeCCCCCCcceEEEEcCCCc-EEEEe-cCCCcEEEEecCCCceeeeeecc
Q 036585 202 SFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVISG-SGDGSVHAWSVRSGKEVASWMSF 259 (304)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~-~~dg~i~v~d~~~~~~~~~~~~~ 259 (304)
+.+++.+.++.. ..++.+++.+.+.+ +|++. ..++.+.+||..+++.+.++..-
T Consensus 276 ~~t~krv~Ri~l----~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 276 LKTHKRVARIPL----EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp TTTTEEEEEEEE----EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred CCCCeEEEEEeC----CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 999999999983 45677899999765 55544 46789999999999999888643
No 321
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.95 E-value=5.9e-09 Score=75.94 Aligned_cols=187 Identities=14% Similarity=0.122 Sum_probs=109.6
Q ss_pred cEEEEeeCCCeEEEEecCCcc------------eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceee
Q 036585 28 IYLVTASDDESIRLYDVTAAT------------CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYS 95 (304)
Q Consensus 28 ~~l~~~~~d~~i~vw~~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~ 95 (304)
..|+++..++.+.....-++. +...+..|.++-.+-+.+-.++.++++.. ||.+.+++.+.-..+
T Consensus 48 ~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~---dg~~~v~s~~~~~~~ 124 (319)
T KOG4714|consen 48 YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYA---DGSLAVFSTDKDLAL 124 (319)
T ss_pred heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCC---CceEEEEechHHHhh
Confidence 456666666555554433222 22333344444444444556778888888 999999987652111
Q ss_pred -eecc-cccccEEEEEEcCCCCEEEEccc-----CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEE
Q 036585 96 -RYFK-GHHDRVVLLSLCSSKDCFISGSL-----DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFS 168 (304)
Q Consensus 96 -~~~~-~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (304)
..+. .|.+. .+.++...++.+.++.- -+..+.|+++..+....-.
T Consensus 125 ~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~--------------------------- 176 (319)
T KOG4714|consen 125 MSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK--------------------------- 176 (319)
T ss_pred hhhcccccccc-cccceeecccEEecCCcceEeeccceeeecccccccccccc---------------------------
Confidence 1111 12211 12222234444444332 1233444444322211111
Q ss_pred ecCCCCCceEEEEecCC-cEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcC-CCcEEEEecCCCcEEEEe
Q 036585 169 VGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-EGMFVISGSGDGSVHAWS 246 (304)
Q Consensus 169 ~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~v~d 246 (304)
.....|.+++-+|.. ..+++|+.||.+.+||.+.......+- ..|+.++..+-|+| ++..|+++++||.+..||
T Consensus 177 --~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l--~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 177 --KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLL--KAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD 252 (319)
T ss_pred --cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHH--HHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence 112348888888854 567778899999999999874333322 26889999999999 678999999999999999
Q ss_pred cCC
Q 036585 247 VRS 249 (304)
Q Consensus 247 ~~~ 249 (304)
..+
T Consensus 253 as~ 255 (319)
T KOG4714|consen 253 AST 255 (319)
T ss_pred CCC
Confidence 763
No 322
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.91 E-value=5.4e-09 Score=54.87 Aligned_cols=39 Identities=13% Similarity=0.392 Sum_probs=36.7
Q ss_pred cceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEE
Q 036585 47 ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 88 (304)
Q Consensus 47 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd 88 (304)
++++.++.+|...|.+++|+|++..+++++. |+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~---D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSS---DGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEET---TSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCC---CCEEEEEC
Confidence 4678899999999999999999999999998 99999997
No 323
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.91 E-value=1.3e-06 Score=77.03 Aligned_cols=197 Identities=11% Similarity=0.145 Sum_probs=127.4
Q ss_pred eEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEc----cCceee
Q 036585 20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL----HDNKYS 95 (304)
Q Consensus 20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~----~~~~~~ 95 (304)
.+.+..+.+-++.+...|.|.+-|.++.... ....-..+|.+++|+||...++..+. .+++.+-+- -..+++
T Consensus 73 s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~---~~tll~mT~~f~~i~E~~L 148 (1265)
T KOG1920|consen 73 SVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITG---RQTLLFMTKDFEPIAEKPL 148 (1265)
T ss_pred EEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeC---CcEEEEEeccccchhcccc
Confidence 3566777888888999999999888765432 12223468999999999999999886 667765432 111111
Q ss_pred -------------------eecccc---------------------cccEEEEEEcCCCCEEEEc-----ccCCeEEEEe
Q 036585 96 -------------------RYFKGH---------------------HDRVVLLSLCSSKDCFISG-----SLDRTVLLWD 130 (304)
Q Consensus 96 -------------------~~~~~~---------------------~~~v~~~~~~~~~~~l~~~-----~~dg~i~iwd 130 (304)
..+.+. .+.=+++.|.-||+++++. ...+.|++||
T Consensus 149 ~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~d 228 (1265)
T KOG1920|consen 149 DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYD 228 (1265)
T ss_pred ccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEec
Confidence 111110 1112358899999998883 2337899999
Q ss_pred CCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEe---eCCCeEEEEEcCCCce
Q 036585 131 QRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLT---TMEGHIHVLDSFRGTL 207 (304)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~~~d~~~~~~ 207 (304)
-+ +.....-. ...+.-.+++|-|.|..+++- ..++.|.+|. ++|-.
T Consensus 229 rE-g~Lns~se-----------------------------~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~ 277 (1265)
T KOG1920|consen 229 RE-GALNSTSE-----------------------------PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLR 277 (1265)
T ss_pred cc-chhhcccC-----------------------------cccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCcc
Confidence 66 33221111 111234578999999988874 3456799998 45544
Q ss_pred eEEEEeCCC-CCCcceEEEEcCCCcEEEE---ecCCCcEEEEecCCCc
Q 036585 208 LSTYNVKPV-SRNSTLEASFSPEGMFVIS---GSGDGSVHAWSVRSGK 251 (304)
Q Consensus 208 ~~~~~~~~~-~~~~i~~~~~s~~~~~l~~---~~~dg~i~v~d~~~~~ 251 (304)
-..+..... ....+..++|+.++..||. ......|++|-+.+..
T Consensus 278 hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 278 HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 444443222 3334899999999999987 4445559999987743
No 324
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.87 E-value=1e-05 Score=67.98 Aligned_cols=250 Identities=14% Similarity=0.102 Sum_probs=145.4
Q ss_pred EEEeeCCCeEEEEecCCcceeeeeccc-------------ccce---------------eEEEEc-----cCCCeEEEEe
Q 036585 30 LVTASDDESIRLYDVTAATCLKTINSK-------------KYGV---------------DLVCFT-----SHPTTVIYSS 76 (304)
Q Consensus 30 l~~~~~d~~i~vw~~~~~~~~~~~~~~-------------~~~v---------------~~~~~~-----~~~~~l~~~~ 76 (304)
+.+|+..|.++|+-+.+++.+..+.-. ...| +...+| .||++|+.-.
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find 148 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND 148 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence 668889999999999988877654210 0011 111111 2566666665
Q ss_pred cCCCCCceEEEEccCceeeeecc---------------cccccEEE-----EEEcCCCCEEEEc-ccCCeEEEEeCCcce
Q 036585 77 KNGWDESLRLLSLHDNKYSRYFK---------------GHHDRVVL-----LSLCSSKDCFISG-SLDRTVLLWDQRAEK 135 (304)
Q Consensus 77 ~~~~d~~i~vwd~~~~~~~~~~~---------------~~~~~v~~-----~~~~~~~~~l~~~-~~dg~i~iwd~~~~~ 135 (304)
.. +..|...++...++-+.+. .+++.|.+ +=+.|||+.+... -..+.+.+.|.++.+
T Consensus 149 k~--n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etme 226 (635)
T PRK02888 149 KA--NTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETME 226 (635)
T ss_pred CC--CcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccce
Confidence 42 5555555555443322211 12223322 1123455544322 234567778888877
Q ss_pred eeceEEEeccc-eeEecCCCeEEEecC----CCeEEEEecCCCCCceEEEE--------ecCCcEEEEeeCCCeEEEEEc
Q 036585 136 CQGLLRVQGRP-AAAYDDQGLVFGYEK----GPLDIFSVGGDISDANVVKF--------SNDGRLMLLTTMEGHIHVLDS 202 (304)
Q Consensus 136 ~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~--------~~~~~~l~~~~~dg~i~~~d~ 202 (304)
....+...+.+ ...+++++..+.... ....+..+...... ..+.| .++|++..++ +++|.+.|.
T Consensus 227 V~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d-~~vvfni~~iea~vkdGK~~~V~--gn~V~VID~ 303 (635)
T PRK02888 227 VAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD-WVVVFNIARIEEAVKAGKFKTIG--GSKVPVVDG 303 (635)
T ss_pred EEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCc-eEEEEchHHHHHhhhCCCEEEEC--CCEEEEEEC
Confidence 77776665544 456666765442221 11122222211111 33334 3467766663 578999999
Q ss_pred CC-----CceeEEEEeCCCCCCcceEEEEcCCCcEEEEec-CCCcEEEEecCCCce------------eeeeeccCCCCc
Q 036585 203 FR-----GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS-GDGSVHAWSVRSGKE------------VASWMSFDTEPP 264 (304)
Q Consensus 203 ~~-----~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~v~d~~~~~~------------~~~~~~~~~~i~ 264 (304)
++ .+.+..+. -......+.++|||+++++++ .+.+|.|+|+.+.+. ..+..- .....
T Consensus 304 ~t~~~~~~~v~~yIP----VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPL 378 (635)
T PRK02888 304 RKAANAGSALTRYVP----VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPL 378 (635)
T ss_pred CccccCCcceEEEEE----CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcc
Confidence 88 34555555 445666799999999988765 588999999987552 333332 33445
Q ss_pred eEEeCCCCcEEEEecCc--eEEeccCC
Q 036585 265 VIKWAPGSLMFVTGSSE--LSFWIPDL 289 (304)
Q Consensus 265 ~~~~~~~~~~l~s~~~d--~~iw~~~~ 289 (304)
..+|.++|....|-.-| +..|+++.
T Consensus 379 HTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 379 HTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred eEEECCCCCEEEeEeecceeEEEehHH
Confidence 67899999877777777 77888764
No 325
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.87 E-value=4.6e-06 Score=68.37 Aligned_cols=136 Identities=21% Similarity=0.290 Sum_probs=90.6
Q ss_pred EEEecCCCeEEEEecCCCCCceEEEEec-CCcEEEEe----eCCCe----EEEEEcCCCceeEEEEeCCCCCCcceEEEE
Q 036585 156 VFGYEKGPLDIFSVGGDISDANVVKFSN-DGRLMLLT----TMEGH----IHVLDSFRGTLLSTYNVKPVSRNSTLEASF 226 (304)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~----~~dg~----i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~ 226 (304)
++....+.+.+...-..+....++.||. +...+.+- +.+|. -.+|+....+....-...-.....+.++++
T Consensus 188 L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~ 267 (545)
T PF11768_consen 188 LLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCAR 267 (545)
T ss_pred EEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEec
Confidence 3344444555544444445556677765 33334332 23343 456776655433222222246788999999
Q ss_pred cCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCcccc
Q 036585 227 SPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKLG 293 (304)
Q Consensus 227 s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~~ 293 (304)
+|+...++.|+.||+|.+||...+. ..+....-.++.++|+|+|.++++|+.. +.+||..++.+.
T Consensus 268 sp~E~kLvlGC~DgSiiLyD~~~~~--t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~ 334 (545)
T PF11768_consen 268 SPSEDKLVLGCEDGSIILYDTTRGV--TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIK 334 (545)
T ss_pred CcccceEEEEecCCeEEEEEcCCCe--eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccc
Confidence 9999999999999999999986653 2333455678999999999999999987 889988776553
No 326
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.83 E-value=5.6e-07 Score=73.65 Aligned_cols=206 Identities=16% Similarity=0.179 Sum_probs=126.6
Q ss_pred EEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCC-CceEEEEccCceeeeecccccccEEEEEEcCCCCEE
Q 036585 39 IRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD-ESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCF 117 (304)
Q Consensus 39 i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d-~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 117 (304)
+.+-|.+ +...+.+......+..-+|+|++..++........ ..+.++++.+++....+. ..+.-...+|+|||+.+
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l 252 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKL 252 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEE
Confidence 4444433 44444555555677888999999988777543213 469999999887655444 33344567899999876
Q ss_pred EEc-ccCC--eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC-
Q 036585 118 ISG-SLDR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM- 193 (304)
Q Consensus 118 ~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 193 (304)
+.+ ..|| .|.++|+..+...+ +. ...+.-..-.|+|||++++..+.
T Consensus 253 ~f~~~rdg~~~iy~~dl~~~~~~~-Lt-----------------------------~~~gi~~~Ps~spdG~~ivf~Sdr 302 (425)
T COG0823 253 AFSSSRDGSPDIYLMDLDGKNLPR-LT-----------------------------NGFGINTSPSWSPDGSKIVFTSDR 302 (425)
T ss_pred EEEECCCCCccEEEEcCCCCccee-cc-----------------------------cCCccccCccCCCCCCEEEEEeCC
Confidence 654 4555 46677877766332 11 11112225689999998887654
Q ss_pred CC--eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecC-CCc--EEEEecCCCceeeeeeccCCCCceEEe
Q 036585 194 EG--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG-DGS--VHAWSVRSGKEVASWMSFDTEPPVIKW 268 (304)
Q Consensus 194 dg--~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~--i~v~d~~~~~~~~~~~~~~~~i~~~~~ 268 (304)
.| .|.++|...+.. ..+.. ....-..-.|+|||++++..+. +|. |.+.|+.++.....+ ........-.|
T Consensus 303 ~G~p~I~~~~~~g~~~-~riT~---~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l-t~~~~~e~ps~ 377 (425)
T COG0823 303 GGRPQIYLYDLEGSQV-TRLTF---SGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL-TSTYLNESPSW 377 (425)
T ss_pred CCCcceEEECCCCCce-eEeec---cCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEc-cccccCCCCCc
Confidence 33 477778766655 33332 1222226789999999887764 344 777777666543333 23334445667
Q ss_pred CCCCcEEEEecCc
Q 036585 269 APGSLMFVTGSSE 281 (304)
Q Consensus 269 ~~~~~~l~s~~~d 281 (304)
.|+++.+...+..
T Consensus 378 ~~ng~~i~~~s~~ 390 (425)
T COG0823 378 APNGRMIMFSSGQ 390 (425)
T ss_pred CCCCceEEEeccC
Confidence 7888776655443
No 327
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.83 E-value=1.8e-05 Score=65.12 Aligned_cols=226 Identities=15% Similarity=0.133 Sum_probs=119.1
Q ss_pred eeEeecccCcEEEEeeCC----------C-eEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEE
Q 036585 19 EILQSMEVGIYLVTASDD----------E-SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 87 (304)
Q Consensus 19 ~~i~~~~~~~~l~~~~~d----------~-~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vw 87 (304)
..++..+.|..+|....+ . .|+||+.. |+++.++.-..+.+.++.|+.+...++.. . ||.+++|
T Consensus 32 ~~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~LvvV~-~---dG~v~vy 106 (410)
T PF04841_consen 32 YIVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELVVVQ-S---DGTVRVY 106 (410)
T ss_pred eeEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEEEEE-c---CCEEEEE
Confidence 345666666666666443 1 58999854 77777766555799999999866555554 4 9999999
Q ss_pred EccCceeeeec-------ccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcce-eeceEEEeccceeEecCCCeEEEe
Q 036585 88 SLHDNKYSRYF-------KGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEK-CQGLLRVQGRPAAAYDDQGLVFGY 159 (304)
Q Consensus 88 d~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 159 (304)
|+.... ...+ .-....+....+..+|-.+++ .++.+.+.+--... ....+. ..+.....
T Consensus 107 ~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~~~~~~~~~~--~~p~~~~~-------- 173 (410)
T PF04841_consen 107 DLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNIDEPVKLRRLP--EIPGLWTK-------- 173 (410)
T ss_pred eCCCce-eechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCccccchhhccc--cCCCcccc--------
Confidence 986433 1111 111122223334445533333 33444443221111 111110 00000000
Q ss_pred cCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC
Q 036585 160 EKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD 239 (304)
Q Consensus 160 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 239 (304)
............++.+....+....++.+.+.+-...+. + ...+++..++.||+++++|.-..+
T Consensus 174 ---------~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i----~~~~~i~~iavSpng~~iAl~t~~ 237 (410)
T PF04841_consen 174 ---------FHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I----DSDGPIIKIAVSPNGKFIALFTDS 237 (410)
T ss_pred ---------cccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c----cCCCCeEEEEECCCCCEEEEEECC
Confidence 000000000133444555555555556666554322211 1 234678889999999999888888
Q ss_pred CcEEEEecCCCceeeeeecc-CCCCceEEeCCCCcEEEEe
Q 036585 240 GSVHAWSVRSGKEVASWMSF-DTEPPVIKWAPGSLMFVTG 278 (304)
Q Consensus 240 g~i~v~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~ 278 (304)
|.+.+.+..-.+.+.++... ......+.|..+...++.-
T Consensus 238 g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~ 277 (410)
T PF04841_consen 238 GNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW 277 (410)
T ss_pred CCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe
Confidence 88888876545555555333 3456777777665444433
No 328
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.83 E-value=1.2e-05 Score=60.67 Aligned_cols=206 Identities=10% Similarity=0.082 Sum_probs=113.1
Q ss_pred eecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccc-cccEEEEEEcCCCCEEEEcccCCeEEEEe
Q 036585 52 TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGH-HDRVVLLSLCSSKDCFISGSLDRTVLLWD 130 (304)
Q Consensus 52 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 130 (304)
.+.+-...+..++|+|+.+.|++.... .+.|..++.. |+.++.+.-. .+....+++..++.++++.-.++.+.+++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~--~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDE--PGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETT--TTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECC--CCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 344545569999999998888777754 7777777764 6666665422 35678899988887777777789999998
Q ss_pred CCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCC---Cce
Q 036585 131 QRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR---GTL 207 (304)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~---~~~ 207 (304)
+........... ..... +-....+...+..++|+|.++.|+++-...-..+|.++. ...
T Consensus 93 ~~~~~~~~~~~~--~~~~~----------------l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~ 154 (248)
T PF06977_consen 93 IDDDTTSLDRAD--VQKIS----------------LGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFD 154 (248)
T ss_dssp E----TT--EEE--EEEEE-------------------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS-
T ss_pred Eeccccccchhh--ceEEe----------------cccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccc
Confidence 854322111100 00000 000012445688999999888788877766666776653 222
Q ss_pred eEEEEe-----CCCCCCcceEEEEcCC-CcEEEEecCCCcEEEEecCCCceeeeeeccC---------CCCceEEeCCCC
Q 036585 208 LSTYNV-----KPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGKEVASWMSFD---------TEPPVIKWAPGS 272 (304)
Q Consensus 208 ~~~~~~-----~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~---------~~i~~~~~~~~~ 272 (304)
...... .......+.+++++|. +.+++.......|..+| .+|+.+..+.-.. ...-.|+|.++|
T Consensus 155 ~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G 233 (248)
T PF06977_consen 155 LFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG 233 (248)
T ss_dssp -EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT-
T ss_pred eeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCC
Confidence 221110 1123345778999995 56677777888899999 6777766553222 245789999999
Q ss_pred cEEEEec
Q 036585 273 LMFVTGS 279 (304)
Q Consensus 273 ~~l~s~~ 279 (304)
++.++.=
T Consensus 234 ~LYIvsE 240 (248)
T PF06977_consen 234 NLYIVSE 240 (248)
T ss_dssp -EEEEET
T ss_pred CEEEEcC
Confidence 7666553
No 329
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=1.2e-06 Score=73.96 Aligned_cols=177 Identities=14% Similarity=0.168 Sum_probs=123.8
Q ss_pred CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEE
Q 036585 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVV 106 (304)
Q Consensus 27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~ 106 (304)
++.|+.|+.+|.|++.+.+ +.+ .+...|... ..+|.++++++. ||+|.|-.+-+.+...++. ...++.
T Consensus 49 ~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~---DGkv~I~sl~~~~~~~~~d-f~rpik 116 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSD---DGKVVIGSLFTDDEITQYD-FKRPIK 116 (846)
T ss_pred cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecC---CCcEEEeeccCCccceeEe-cCCcce
Confidence 7899999999999999976 333 333344432 568999999999 9999999998888776665 557899
Q ss_pred EEEEcCC-----CCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEE
Q 036585 107 LLSLCSS-----KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKF 181 (304)
Q Consensus 107 ~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 181 (304)
+++++|+ .+.+++|+..| +.++.-+=....... .+....++|.++.|
T Consensus 117 sial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v---------------------------~l~~~eG~I~~i~W 168 (846)
T KOG2066|consen 117 SIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV---------------------------VLSEGEGPIHSIKW 168 (846)
T ss_pred eEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce---------------------------eeecCccceEEEEe
Confidence 9999997 56899999888 666542211111111 11134578999999
Q ss_pred ecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCC---CCCcceEEEEcCCCcEEEEecCCCcEEEEecC
Q 036585 182 SNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV---SRNSTLEASFSPEGMFVISGSGDGSVHAWSVR 248 (304)
Q Consensus 182 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~ 248 (304)
.|.++|-++.+| |++||+.+++.+..++.+.. .......+.|.++.+ |+.| ...+|+|..++
T Consensus 169 --~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 169 --RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIK 233 (846)
T ss_pred --cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEe
Confidence 588888888776 79999998887777663221 111233577876654 4444 44468888887
No 330
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.80 E-value=1.3e-05 Score=64.89 Aligned_cols=257 Identities=15% Similarity=0.167 Sum_probs=137.8
Q ss_pred cccCcEEEEee---------CCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee
Q 036585 24 MEVGIYLVTAS---------DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY 94 (304)
Q Consensus 24 ~~~~~~l~~~~---------~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~ 94 (304)
+||+++++... ..+.+.++|+++++....... ...+....|+|+|+.++... ++.|.+++..+++.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~----~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR----DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE----TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe----cCceEEEECCCCCe
Confidence 46777776632 245688999998765544333 56788999999999999998 88999999877754
Q ss_pred eeecc-c-------c---------cccEEEEEEcCCCCEEEEcccC-CeEEEEeC---Ccce----eeceEEEe--ccce
Q 036585 95 SRYFK-G-------H---------HDRVVLLSLCSSKDCFISGSLD-RTVLLWDQ---RAEK----CQGLLRVQ--GRPA 147 (304)
Q Consensus 95 ~~~~~-~-------~---------~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~---~~~~----~~~~~~~~--~~~~ 147 (304)
.+.-. + - -+.-..+-|+||+++|+....| ..|+.+.+ .... ....++-+ +...
T Consensus 76 ~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~n 155 (353)
T PF00930_consen 76 TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPN 155 (353)
T ss_dssp EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS--
T ss_pred EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcC
Confidence 43211 1 0 1122568899999998886543 33443332 2111 11111111 1110
Q ss_pred eEecCCC--eEEEecCCCeEEEEe----cCCCCCceEEEEecCCcEEEEee--CC---CeEEEEEcCCCceeEEEEeC-C
Q 036585 148 AAYDDQG--LVFGYEKGPLDIFSV----GGDISDANVVKFSNDGRLMLLTT--ME---GHIHVLDSFRGTLLSTYNVK-P 215 (304)
Q Consensus 148 ~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~--~d---g~i~~~d~~~~~~~~~~~~~-~ 215 (304)
+.- .++....+....... ......+..+.|.++++.|++.- .+ ..+.++|..+++........ .
T Consensus 156 ----p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~ 231 (353)
T PF00930_consen 156 ----PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSD 231 (353)
T ss_dssp -----EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESS
T ss_pred ----CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCC
Confidence 111 111222222222221 23445677899999998454432 22 25777888777655444321 1
Q ss_pred CCCCcceEEEEc-CCC-cEEEEecCCCc--EEEEecCCCceeeeeeccCCCCce-EEeCCCCcEE-EEecCc----eEEe
Q 036585 216 VSRNSTLEASFS-PEG-MFVISGSGDGS--VHAWSVRSGKEVASWMSFDTEPPV-IKWAPGSLMF-VTGSSE----LSFW 285 (304)
Q Consensus 216 ~~~~~i~~~~~s-~~~-~~l~~~~~dg~--i~v~d~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l-~s~~~d----~~iw 285 (304)
.--..-....|. +++ .+|.....+|. |.+++...+. ...+....-.|.. +.|+++++.+ +++..+ -.||
T Consensus 232 ~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY 310 (353)
T PF00930_consen 232 GWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLY 310 (353)
T ss_dssp SSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEE
T ss_pred cceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEE
Confidence 111222345554 554 45555556775 5555654444 4455555566754 6688876644 455543 6777
Q ss_pred ccCCc
Q 036585 286 IPDLS 290 (304)
Q Consensus 286 ~~~~~ 290 (304)
..+..
T Consensus 311 ~v~~~ 315 (353)
T PF00930_consen 311 RVSLD 315 (353)
T ss_dssp EEETT
T ss_pred EEEeC
Confidence 66555
No 331
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.80 E-value=2.4e-07 Score=79.14 Aligned_cols=179 Identities=16% Similarity=0.189 Sum_probs=129.3
Q ss_pred CCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccce
Q 036585 68 HPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA 147 (304)
Q Consensus 68 ~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 147 (304)
++..++.|+- ...+..+|+++.+..+...-....|.-+.. +++++.+|...|+|.+-|.++.+.+..+.
T Consensus 146 ~~~~~i~Gg~---Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~------ 214 (1118)
T KOG1275|consen 146 GPSTLIMGGL---QEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFD------ 214 (1118)
T ss_pred CCcceeecch---hhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeee------
Confidence 3455666665 677888899888777666544445555544 67899999999999999999988887776
Q ss_pred eEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC---------CCeEEEEEcCCCceeEEEEeCCCCC
Q 036585 148 AAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM---------EGHIHVLDSFRGTLLSTYNVKPVSR 218 (304)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~~~d~~~~~~~~~~~~~~~~~ 218 (304)
.|.+.+.. |+-.|+.|++++. |..|+|||++..+.+..+.. +.
T Consensus 215 -----------------------aHs~siSD--fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~---~~ 266 (1118)
T KOG1275|consen 215 -----------------------AHSGSISD--FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF---PY 266 (1118)
T ss_pred -----------------------ccccceee--eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccc---cc
Confidence 45555554 4447888888764 45689999999887777663 33
Q ss_pred CcceEEEEcCC-CcEEEEecCCCcEEEEecC---CCce-eeeeeccCCCCceEEeCCCCcEEEEecCc--eEEec
Q 036585 219 NSTLEASFSPE-GMFVISGSGDGSVHAWSVR---SGKE-VASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWI 286 (304)
Q Consensus 219 ~~i~~~~~s~~-~~~l~~~~~dg~i~v~d~~---~~~~-~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~ 286 (304)
++ .-+.|.|. ...+++++..|...+-|.. +... +..+..-...+..+.+++++..++.+..+ +.+|.
T Consensus 267 ~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 267 GP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred Cc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 33 44788884 4567888889999999943 3211 23333344558999999999999999888 88886
No 332
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.79 E-value=1.9e-05 Score=58.35 Aligned_cols=177 Identities=14% Similarity=0.082 Sum_probs=110.9
Q ss_pred CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEE
Q 036585 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVV 106 (304)
Q Consensus 27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~ 106 (304)
..+++.|+..+.+.--|.++|+.+-+-.-. ..+.+-+.- -|++++.|+. .|.+++.+..+|+....+.....--.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg-~RiE~sa~v-vgdfVV~GCy---~g~lYfl~~~tGs~~w~f~~~~~vk~ 97 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG-VRIECSAIV-VGDFVVLGCY---SGGLYFLCVKTGSQIWNFVILETVKV 97 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC-ceeeeeeEE-ECCEEEEEEc---cCcEEEEEecchhheeeeeehhhhcc
Confidence 568889999999999999999876443211 123322222 4778999998 99999999999987777664333223
Q ss_pred EEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccce--eEecC-CC-eEEEecCCCeEEEEecCC----------
Q 036585 107 LLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA--AAYDD-QG-LVFGYEKGPLDIFSVGGD---------- 172 (304)
Q Consensus 107 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~-~~-~~~~~~~~~~~~~~~~~~---------- 172 (304)
.....+++..+..++.|++.+..|.++..++...+..+... .++++ ++ .++....+.+...+....
T Consensus 98 ~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~ 177 (354)
T KOG4649|consen 98 RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATR 177 (354)
T ss_pred ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhhc
Confidence 34566789999999999999999999998887766554432 12233 22 233333333222221111
Q ss_pred CCCceEEEEec--CCcEEEEeeCCCeEEEEEcCCCceeEEEE
Q 036585 173 ISDANVVKFSN--DGRLMLLTTMEGHIHVLDSFRGTLLSTYN 212 (304)
Q Consensus 173 ~~~v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 212 (304)
..++.. +| -+..+..++.||.+.-+| ..|+.+.++.
T Consensus 178 ~~PiF~---splcv~~sv~i~~VdG~l~~f~-~sG~qvwr~~ 215 (354)
T KOG4649|consen 178 FGPIFA---SPLCVGSSVIITTVDGVLTSFD-ESGRQVWRPA 215 (354)
T ss_pred CCcccc---CceeccceEEEEEeccEEEEEc-CCCcEEEeec
Confidence 111110 11 134566667788887777 6666666554
No 333
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.75 E-value=1.9e-06 Score=70.62 Aligned_cols=181 Identities=17% Similarity=0.172 Sum_probs=111.4
Q ss_pred eecccCcEEEEee---CC-CeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee
Q 036585 22 QSMEVGIYLVTAS---DD-ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY 97 (304)
Q Consensus 22 ~~~~~~~~l~~~~---~d-~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~ 97 (304)
.+++++..++..+ .. ..+.++++++++....+. ..+.-...+|+|||+.|+........-.|+++|+.+++..+
T Consensus 199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~- 276 (425)
T COG0823 199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR- 276 (425)
T ss_pred ccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-
Confidence 5677776655442 22 468899998877655544 22234457899999999988875334456667887776433
Q ss_pred cccccccEEEEEEcCCCCEEEEccc-CC--eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCC
Q 036585 98 FKGHHDRVVLLSLCSSKDCFISGSL-DR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDIS 174 (304)
Q Consensus 98 ~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (304)
+..-.+.-..-.|+|+|+.++..+. .| .|.++|.+.....+... . ..
T Consensus 277 Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~-~-----------------------------~~ 326 (425)
T COG0823 277 LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF-S-----------------------------GG 326 (425)
T ss_pred cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec-c-----------------------------CC
Confidence 4433333346789999998776653 34 46666666554422211 1 11
Q ss_pred CceEEEEecCCcEEEEeeC-CCe--EEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecC
Q 036585 175 DANVVKFSNDGRLMLLTTM-EGH--IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG 238 (304)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~~-dg~--i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 238 (304)
.-..-.|+|||++++..+. +|. |.+.|+.++.....+. .......-.|.|+++.+...+.
T Consensus 327 ~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt----~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 327 GNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT----STYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred CCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc----ccccCCCCCcCCCCceEEEecc
Confidence 1125789999999888764 344 7777776666444333 2333344678888888765543
No 334
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.68 E-value=7.8e-05 Score=58.16 Aligned_cols=253 Identities=13% Similarity=0.132 Sum_probs=154.4
Q ss_pred CeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecC-------CCCCceEEEEccCceeeeecccccc------
Q 036585 37 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-------GWDESLRLLSLHDNKYSRYFKGHHD------ 103 (304)
Q Consensus 37 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-------~~d~~i~vwd~~~~~~~~~~~~~~~------ 103 (304)
+.+.|+|.++++.+-.+... -...+..+|+++.++++..- ...-.|.+||..+-++...+.-...
T Consensus 17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 47999999998887776643 34447789999999876420 0144689999998766554331111
Q ss_pred -cEEEEEEcCCCCEEEEc--ccCCeEEEEeCCcceeeceEEEeccce-eEecCCCeEEEecCCCeEEEEecCCCCC----
Q 036585 104 -RVVLLSLCSSKDCFISG--SLDRTVLLWDQRAEKCQGLLRVQGRPA-AAYDDQGLVFGYEKGPLDIFSVGGDISD---- 175 (304)
Q Consensus 104 -~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 175 (304)
....+.++.++++++.. +--..|.+.|+..++.+..+..++... ....+.++...+.+|.+....+......
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence 12335778888877764 344578899999988887776655443 2334455666667777766666532111
Q ss_pred -----------ceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeE--EEEeCCC-------CCCcceEEEEcCCCcEEEE
Q 036585 176 -----------ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS--TYNVKPV-------SRNSTLEASFSPEGMFVIS 235 (304)
Q Consensus 176 -----------v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~--~~~~~~~-------~~~~i~~~~~s~~~~~l~~ 235 (304)
...-++...+..++.-+.+|.|+-.|+....... .+..... ..+.-.-+++++..+.|+.
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 1222333444456667889999998887654322 2221100 0122334788876666655
Q ss_pred ec---CCC-------cEEEEecCCCceeeeeeccCCCCceEEeCCCCc-EEEEec-Cc--eEEeccCCccc
Q 036585 236 GS---GDG-------SVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSL-MFVTGS-SE--LSFWIPDLSKL 292 (304)
Q Consensus 236 ~~---~dg-------~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~-~d--~~iw~~~~~~~ 292 (304)
-. .++ .|.++|+++++.+.++.. ..++.+|..+.+.+ +|++.+ .+ +.+||....++
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 42 122 488999999999998863 34678999998765 665443 33 88898866543
No 335
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.67 E-value=6.3e-06 Score=67.83 Aligned_cols=177 Identities=11% Similarity=0.085 Sum_probs=97.9
Q ss_pred cccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcce
Q 036585 56 KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEK 135 (304)
Q Consensus 56 ~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 135 (304)
....+..+.++|+++.+++++ ||...++.....+.. ..+.-..+.|.+++ .+++-.....|.++.--+..
T Consensus 31 ~~~~p~~ls~npngr~v~V~g----~geY~iyt~~~~r~k-----~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCG----DGEYEIYTALAWRNK-----AFGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEE----TTEEEEEETTTTEEE-----EEEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-
T ss_pred CCcCCeeEEECCCCCEEEEEc----CCEEEEEEccCCccc-----ccCceeEEEEecCc-cEEEEECCCeEEEEEcCccc
Confidence 344578999999999999976 889989884333221 23445668888855 56666668889996322222
Q ss_pred eeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCC
Q 036585 136 CQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP 215 (304)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 215 (304)
....+..+ ..+..+-. |..|...+.+ .|.+||+.+++.+.++.
T Consensus 101 ~~k~i~~~------------------------------~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~--- 143 (443)
T PF04053_consen 101 VVKSIKLP------------------------------FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRID--- 143 (443)
T ss_dssp TT-----S------------------------------S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEES---
T ss_pred cceEEcCC------------------------------cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEe---
Confidence 22233221 11222222 7777776555 89999999999999886
Q ss_pred CCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC-----------ceeeeeeccCCCCceEEeCCCCcEEEEecCceE
Q 036585 216 VSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG-----------KEVASWMSFDTEPPVIKWAPGSLMFVTGSSELS 283 (304)
Q Consensus 216 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~-----------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~ 283 (304)
. .+|..+.|++++.+++..+.+ .+.|++.... ..+..+......|.+.+|..+ -+++|....++
T Consensus 144 -v-~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~~lk 218 (443)
T PF04053_consen 144 -V-SAVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSNHLK 218 (443)
T ss_dssp -S--E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TTEEE
T ss_pred -c-CCCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCCeEE
Confidence 2 248899999999999999755 5888775322 033334333567888888776 44444443333
No 336
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.67 E-value=9e-05 Score=60.10 Aligned_cols=233 Identities=13% Similarity=0.136 Sum_probs=121.3
Q ss_pred cceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeec-c---------------c-ccceeEEEEccCCCeEEEEecC
Q 036585 16 LSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTIN-S---------------K-KYGVDLVCFTSHPTTVIYSSKN 78 (304)
Q Consensus 16 ~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~---------------~-~~~v~~~~~~~~~~~l~~~~~~ 78 (304)
.......++|+|+.+|... ++.|.+++..+++..+.-. + . -+.-..+-||||+++|+....+
T Consensus 43 ~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 43 PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred cccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence 3455688999999999886 4689999987764433211 1 0 1123578899999999988763
Q ss_pred CCCCceEEE-----------------------------------EccCceeeee--c---ccccccEEEEEEcCCCCEEE
Q 036585 79 GWDESLRLL-----------------------------------SLHDNKYSRY--F---KGHHDRVVLLSLCSSKDCFI 118 (304)
Q Consensus 79 ~~d~~i~vw-----------------------------------d~~~~~~~~~--~---~~~~~~v~~~~~~~~~~~l~ 118 (304)
+..|..+ |+.+++.... . ..-...+..+.|.++++.|+
T Consensus 122 --~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~ 199 (353)
T PF00930_consen 122 --EREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW 199 (353)
T ss_dssp ---TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred --CcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence 3444333 3333322110 0 11233566677777766333
Q ss_pred Eccc-----CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEe-cCC-cEEEEe
Q 036585 119 SGSL-----DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFS-NDG-RLMLLT 191 (304)
Q Consensus 119 ~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~-~~l~~~ 191 (304)
..-. ...+.+.|..++........... +--..-....+. +++ .++...
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~-------------------------~Wv~~~~~~~~~~~~~~~~l~~s 254 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSD-------------------------GWVDVYDPPHFLGPDGNEFLWIS 254 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEEEEEESS-------------------------SSSSSSSEEEE-TTTSSEEEEEE
T ss_pred EEEcccCCCEEEEEEEECCCCceeEEEEecCC-------------------------cceeeecccccccCCCCEEEEEE
Confidence 3221 12344555555443332221111 011122345554 554 445555
Q ss_pred eCCC--eEEEEEcCCCceeEEEEeCCCCCCcce-EEEEcCCCcEEE-EecCC----CcEEEEecCCCceeeeeeccCCCC
Q 036585 192 TMEG--HIHVLDSFRGTLLSTYNVKPVSRNSTL-EASFSPEGMFVI-SGSGD----GSVHAWSVRSGKEVASWMSFDTEP 263 (304)
Q Consensus 192 ~~dg--~i~~~d~~~~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~-~~~~d----g~i~v~d~~~~~~~~~~~~~~~~i 263 (304)
..+| .|.+++...+... .+. ...-.|. -+.++++++.|+ ++..+ ..|+.-++..+..+..+....+.-
T Consensus 255 ~~~G~~hly~~~~~~~~~~-~lT---~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~ 330 (353)
T PF00930_consen 255 ERDGYRHLYLYDLDGGKPR-QLT---SGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDH 330 (353)
T ss_dssp ETTSSEEEEEEETTSSEEE-ESS----SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTT
T ss_pred EcCCCcEEEEEccccccee-ccc---cCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCc
Confidence 5666 4666666655533 222 2445564 377888876554 55442 346666666234455565443333
Q ss_pred ceEEeCCCCcEEEEecC
Q 036585 264 PVIKWAPGSLMFVTGSS 280 (304)
Q Consensus 264 ~~~~~~~~~~~l~s~~~ 280 (304)
..+.|||++++++-...
T Consensus 331 ~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 331 YSASFSPDGKYYVDTYS 347 (353)
T ss_dssp EEEEE-TTSSEEEEEEE
T ss_pred eEEEECCCCCEEEEEEc
Confidence 59999999998875543
No 337
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.63 E-value=2.8e-05 Score=63.97 Aligned_cols=72 Identities=19% Similarity=0.297 Sum_probs=61.8
Q ss_pred CCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecC
Q 036585 172 DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVR 248 (304)
Q Consensus 172 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~ 248 (304)
..+.+.+.+++|+...++.|+.||.|.+||...+..... + ..-..+.++|+|+|..+++|+..|.+.+||+.
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k----a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K----AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e----ecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 557899999999999999999999999999876643322 2 44567889999999999999999999999985
No 338
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=0.00012 Score=59.80 Aligned_cols=224 Identities=15% Similarity=0.121 Sum_probs=150.7
Q ss_pred eeEeecccCc-EEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee
Q 036585 19 EILQSMEVGI-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY 97 (304)
Q Consensus 19 ~~i~~~~~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~ 97 (304)
..+...+.++ .+++...+..|.+.|..+.+......... ....++++|+++.+.++.....++.+.+.|..+++....
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 3455666666 45555556889999988777776655433 677899999999988887631268999999998887777
Q ss_pred cccccccEEEEEEcCCCCEEEEcc-cCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCc
Q 036585 98 FKGHHDRVVLLSLCSSKDCFISGS-LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDA 176 (304)
Q Consensus 98 ~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 176 (304)
...-..+ ..+++.|+++.++... .++.+.+.|........ -. ..... ......
T Consensus 156 ~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~-~~~~~-----------------------~~~~~P 209 (381)
T COG3391 156 IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GS-VGSLV-----------------------GVGTGP 209 (381)
T ss_pred EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cc-ccccc-----------------------ccCCCC
Confidence 4433334 8899999999666554 78899999966554432 10 00000 111234
Q ss_pred eEEEEecCCcEEEEeeCC---CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEec-CCCcEEEEecCCCce
Q 036585 177 NVVKFSNDGRLMLLTTME---GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS-GDGSVHAWSVRSGKE 252 (304)
Q Consensus 177 ~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~v~d~~~~~~ 252 (304)
..+.++|+|+++.+.... +.+...|..++.....-... ... ....+.++|+|+++++.. ..+.+.+.|..+...
T Consensus 210 ~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~-~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v 287 (381)
T COG3391 210 AGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV-GSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRV 287 (381)
T ss_pred ceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc-ccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCce
Confidence 568899999977776544 58999999888776652211 122 455689999999998884 447899999988777
Q ss_pred eeeeeccC---CCCceEEeCCC
Q 036585 253 VASWMSFD---TEPPVIKWAPG 271 (304)
Q Consensus 253 ~~~~~~~~---~~i~~~~~~~~ 271 (304)
........ ..+..+++.+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 288 VKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred eeeecccccccccceeccceee
Confidence 66553322 23455555543
No 339
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.60 E-value=6e-05 Score=62.20 Aligned_cols=224 Identities=15% Similarity=0.120 Sum_probs=119.4
Q ss_pred eeeeecceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEcc
Q 036585 11 KVSLELSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH 90 (304)
Q Consensus 11 ~~~~~~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~ 90 (304)
.......+..+..+|+|++++++ .||...|+.....+... .+.....+|.+.+ .+++-.. ...|.++.--
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~---~~~I~I~kn~ 97 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLES---SSTIKIYKNF 97 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-T---TS-EEEEETT
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEEC---CCeEEEEEcC
Confidence 33444456778999999999995 56788888744333322 2345668899844 4666655 7889996433
Q ss_pred CceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEec
Q 036585 91 DNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVG 170 (304)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (304)
+.+....++. ...+..+-. |.+|...+. +.|.+||+.+++.+..+..
T Consensus 98 ~~~~~k~i~~-~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v---------------------------- 144 (443)
T PF04053_consen 98 KNEVVKSIKL-PFSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDV---------------------------- 144 (443)
T ss_dssp EE-TT------SS-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS----------------------------
T ss_pred ccccceEEcC-CcccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEec----------------------------
Confidence 3333333432 123343333 776666655 4899999999988777642
Q ss_pred CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCC-----------ceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC
Q 036585 171 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG-----------TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD 239 (304)
Q Consensus 171 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-----------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 239 (304)
.+|..+.|+++|++++..+.+ .+.+++.... ....... .....|.+.+|..+ -++++.. .
T Consensus 145 ---~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~---E~~~~IkSg~W~~d-~fiYtT~-~ 215 (443)
T PF04053_consen 145 ---SAVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIH---EISERIKSGCWVED-CFIYTTS-N 215 (443)
T ss_dssp ----E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEE---EE-S--SEEEEETT-EEEEE-T-T
T ss_pred ---CCCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEE---EecceeEEEEEEcC-EEEEEcC-C
Confidence 247889999999999988766 6677664332 0222222 12567888999776 4455543 3
Q ss_pred CcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCc
Q 036585 240 GSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLS 290 (304)
Q Consensus 240 g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~ 290 (304)
.++- +-+|+. ..+..-..++.=+...|..+.+.....+ +..+.++..
T Consensus 216 -~lkY--l~~Ge~-~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 216 -HLKY--LVNGET-GIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp -EEEE--EETTEE-EEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred -eEEE--EEcCCc-ceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 6665 444442 3343345677777888877778877777 555555543
No 340
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.56 E-value=6.7e-05 Score=63.54 Aligned_cols=200 Identities=17% Similarity=0.191 Sum_probs=116.3
Q ss_pred cEEEEeeCCCeEEEEecCCcceeeeecccccc-----ee-EEEEccCCCeEEEEecC------CCCCceEEEEccCceee
Q 036585 28 IYLVTASDDESIRLYDVTAATCLKTINSKKYG-----VD-LVCFTSHPTTVIYSSKN------GWDESLRLLSLHDNKYS 95 (304)
Q Consensus 28 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-----v~-~~~~~~~~~~l~~~~~~------~~d~~i~vwd~~~~~~~ 95 (304)
..++.++.++.|.-+|.++++.+-+....... +. ...+ .+..++.++.. +.++.+.-+|..+++.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v--~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTI--VKKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEE--ECCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 67888888999999999999988766543221 11 1122 23455555421 12678899999999877
Q ss_pred eecccccc--------------------cE-EEEEEcCCCCEEEEcccCC------------------eEEEEeCCccee
Q 036585 96 RYFKGHHD--------------------RV-VLLSLCSSKDCFISGSLDR------------------TVLLWDQRAEKC 136 (304)
Q Consensus 96 ~~~~~~~~--------------------~v-~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~ 136 (304)
-.+..... .+ ....+.+.+..++.++.++ .+.-+|.++++.
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 66543211 01 1233444456677776554 677788888877
Q ss_pred eceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCC-ceEEEEecCCc---EEEEeeCCCeEEEEEcCCCceeEEEE
Q 036585 137 QGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISD-ANVVKFSNDGR---LMLLTTMEGHIHVLDSFRGTLLSTYN 212 (304)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~---~l~~~~~dg~i~~~d~~~~~~~~~~~ 212 (304)
...+....... |.+.....+ +..+. .-++. .+++++.+|.+..+|.++|+.+....
T Consensus 269 ~W~~~~~~~~~-------------------~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 269 KWFYQTTPHDL-------------------WDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP 328 (488)
T ss_pred EEEeeCCCCCC-------------------cccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence 76654321110 000000000 00010 01232 57788899999999999999988776
Q ss_pred eCCCCCCcceEEEEcCCCcEEEEe------------------cCCCcEEEEecCCCceeeeee
Q 036585 213 VKPVSRNSTLEASFSPEGMFVISG------------------SGDGSVHAWSVRSGKEVASWM 257 (304)
Q Consensus 213 ~~~~~~~~i~~~~~s~~~~~l~~~------------------~~dg~i~v~d~~~~~~~~~~~ 257 (304)
.. ...++.+| ..++.+ ..+|.+.-.|+.+++.+-+..
T Consensus 329 ~~------~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~ 383 (488)
T cd00216 329 EV------EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKR 383 (488)
T ss_pred ee------ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEee
Confidence 31 11133444 233332 246788889999998766654
No 341
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=0.00026 Score=57.94 Aligned_cols=241 Identities=13% Similarity=0.121 Sum_probs=151.4
Q ss_pred eeeEeecccCcEEE-EeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee
Q 036585 18 EEILQSMEVGIYLV-TASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR 96 (304)
Q Consensus 18 ~~~i~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~ 96 (304)
...+...+++..+. +-.....+...+...................++.++.++.++..... ++.|.+.|..+.+...
T Consensus 33 ~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~--~~~v~vid~~~~~~~~ 110 (381)
T COG3391 33 PGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGD--SNTVSVIDTATNTVLG 110 (381)
T ss_pred CceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCC--CCeEEEEcCcccceee
Confidence 33455556664333 33232345555544222222222221345578889999877766653 7899999987776665
Q ss_pred ecccccccEEEEEEcCCCCEEEEccc---CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCC
Q 036585 97 YFKGHHDRVVLLSLCSSKDCFISGSL---DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDI 173 (304)
Q Consensus 97 ~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (304)
...- ......+++.|+++.++.+.. ++++.+.|..+.+.........
T Consensus 111 ~~~v-G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~----------------------------- 160 (381)
T COG3391 111 SIPV-GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN----------------------------- 160 (381)
T ss_pred Eeee-ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC-----------------------------
Confidence 5542 225678999999987776654 6888888888777766533211
Q ss_pred CCceEEEEecCCcEEEEee-CCCeEEEEEcCCCceeE-EEEeCCCCCCcceEEEEcCCCcEEEEecCC---CcEEEEecC
Q 036585 174 SDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTLLS-TYNVKPVSRNSTLEASFSPEGMFVISGSGD---GSVHAWSVR 248 (304)
Q Consensus 174 ~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~v~d~~ 248 (304)
.+ ..++++|+|+.+++.. .++.|.++|........ .-............+.++|+|++++..... +.+...|..
T Consensus 161 ~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~ 239 (381)
T COG3391 161 TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTA 239 (381)
T ss_pred Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCC
Confidence 12 6799999999776665 78899999977665553 100001123344568999999977766443 589999998
Q ss_pred CCceeeeeeccCC-CCceEEeCCCCcEEEEecCc---eEEeccCCcc
Q 036585 249 SGKEVASWMSFDT-EPPVIKWAPGSLMFVTGSSE---LSFWIPDLSK 291 (304)
Q Consensus 249 ~~~~~~~~~~~~~-~i~~~~~~~~~~~l~s~~~d---~~iw~~~~~~ 291 (304)
++.....-..-.. ....+..+|+|..+.+.... +.+-+.....
T Consensus 240 ~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 240 TGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred CceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 8877655211111 56778999999988887554 5555544433
No 342
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.56 E-value=1.8e-06 Score=71.88 Aligned_cols=204 Identities=12% Similarity=0.134 Sum_probs=125.2
Q ss_pred cccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc-cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcc
Q 036585 56 KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK-GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAE 134 (304)
Q Consensus 56 ~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 134 (304)
+...+.--++...+++++.|++ -|.+++|+-..++....-. +-.+.+..+..+++..++|.|+..|.|.++-+...
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS---~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~ 108 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSS---AGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKE 108 (726)
T ss_pred CcceEEEEEeecCCceEEEecc---cceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhcc
Confidence 3345666677889999999999 9999999988776433222 23455666778888888999999999999987764
Q ss_pred eeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCC-ceeEEEEe
Q 036585 135 KCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG-TLLSTYNV 213 (304)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~ 213 (304)
......-.... -..|...|++++|++++..+++|...|+|.+-.+.+. ......+.
T Consensus 109 ~p~~~~~~t~~-----------------------d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~ 165 (726)
T KOG3621|consen 109 LPRDLDYVTPC-----------------------DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQE 165 (726)
T ss_pred CCCcceeeccc-----------------------cccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccce
Confidence 33222111000 0126788999999999999999999999999888762 11111111
Q ss_pred CCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeee-e-ccCC-CCceEEeCCC-----CcEEEEecCceEEe
Q 036585 214 KPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASW-M-SFDT-EPPVIKWAPG-----SLMFVTGSSELSFW 285 (304)
Q Consensus 214 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~-~~~~-~i~~~~~~~~-----~~~l~s~~~d~~iw 285 (304)
.......|..+.+. ++ +|+.++--. -.+++++..+. ..+ + ...+ .-...+|-|. ...|+++--..|+|
T Consensus 166 il~~ds~IVQlD~~-q~-~LLVStl~r-~~Lc~tE~eti-~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlW 241 (726)
T KOG3621|consen 166 ILSEDSEIVQLDYL-QS-YLLVSTLTR-CILCQTEAETI-TQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLW 241 (726)
T ss_pred eeccCcceEEeecc-cc-eehHhhhhh-hheeecchhHH-HHhcCCCcCCccccceEEeeccccCCCceEEEecCCCceE
Confidence 11245666666553 33 444333332 33455543321 111 1 1111 1234455553 34666666669999
Q ss_pred ccCC
Q 036585 286 IPDL 289 (304)
Q Consensus 286 ~~~~ 289 (304)
..+.
T Consensus 242 ead~ 245 (726)
T KOG3621|consen 242 EADF 245 (726)
T ss_pred Eeec
Confidence 7654
No 343
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=7.8e-06 Score=63.78 Aligned_cols=218 Identities=11% Similarity=0.141 Sum_probs=123.7
Q ss_pred EeecccCc-EEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee-eeec
Q 036585 21 LQSMEVGI-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY-SRYF 98 (304)
Q Consensus 21 i~~~~~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~-~~~~ 98 (304)
+.++|..+ ++..++.+..|+|.|+++...+..+..+ ..+.+.+|.-+....+.++.. +|.|.+||++..+. +..+
T Consensus 199 lafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~--nG~VlvyD~R~~~~~~~e~ 275 (463)
T KOG1645|consen 199 LAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQ--NGMVLVYDMRQPEGPLMEL 275 (463)
T ss_pred hccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEecc--CceEEEEEccCCCchHhhh
Confidence 56777766 7888999999999999999999988888 589999999988877777654 99999999987542 2222
Q ss_pred cc--ccccEEEEEEcC------CCCEEEEcccCCeEEEEeCCcce--eeceEEE--eccc-eeEecC--CCeEEEecC--
Q 036585 99 KG--HHDRVVLLSLCS------SKDCFISGSLDRTVLLWDQRAEK--CQGLLRV--QGRP-AAAYDD--QGLVFGYEK-- 161 (304)
Q Consensus 99 ~~--~~~~v~~~~~~~------~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~--~~~~-~~~~~~--~~~~~~~~~-- 161 (304)
.+ ...+|..++.-+ .+.+++..+.+ +..|++.-.. .....+. ++.. .+.+++ +..++.+..
T Consensus 276 ~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~tyRs~p 353 (463)
T KOG1645|consen 276 VANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLTYRSNP 353 (463)
T ss_pred hhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEEecCCC
Confidence 22 223455444332 23344443332 4455543211 1111111 1111 111111 111221111
Q ss_pred ---------------CCeEEEEec-CC-CC------CceEEEEecCCcEEE-EeeCCCeEEEEEcCCCceeEEEEeCCCC
Q 036585 162 ---------------GPLDIFSVG-GD-IS------DANVVKFSNDGRLML-LTTMEGHIHVLDSFRGTLLSTYNVKPVS 217 (304)
Q Consensus 162 ---------------~~~~~~~~~-~~-~~------~v~~~~~~~~~~~l~-~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 217 (304)
....++..+ .+ .+ .-..+.-.++.++++ ++.....+.+||..+.+...++. .
T Consensus 354 n~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~----~ 429 (463)
T KOG1645|consen 354 NFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLA----L 429 (463)
T ss_pred CCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhheeeecc----c
Confidence 111222211 11 00 011122234445444 35566789999999999999988 4
Q ss_pred CCcceEEEEcC-C-CcEEEEecCCCcEEEEecC
Q 036585 218 RNSTLEASFSP-E-GMFVISGSGDGSVHAWSVR 248 (304)
Q Consensus 218 ~~~i~~~~~s~-~-~~~l~~~~~dg~i~v~d~~ 248 (304)
..++..++... + +.+|++-. |..++||..+
T Consensus 430 ~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 430 SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred CcceeecceeecCCcchhhhee-cceEEEEecC
Confidence 47777776554 3 34666554 5668888643
No 344
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.53 E-value=0.00022 Score=55.93 Aligned_cols=219 Identities=13% Similarity=0.047 Sum_probs=124.2
Q ss_pred ecccCc-EEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccc-
Q 036585 23 SMEVGI-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKG- 100 (304)
Q Consensus 23 ~~~~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~- 100 (304)
+.++.. ++.+--..+.|.-|+..+++.. .+..+ ..+.++..-..+..|+++ +..+.+++.+++.....+..
T Consensus 32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p-~~~~~~~~~d~~g~Lv~~-----~~g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 32 WDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSP-GGFSSGALIDAGGRLIAC-----EHGVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred CcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECC-CCcccceeecCCCeEEEE-----ccccEEEeccCCceeEEeccc
Confidence 444444 5555566778888888765432 22222 234444444445455555 44667777765554222211
Q ss_pred ----ccccEEEEEEcCCCCEEEEcccC-----------CeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeE
Q 036585 101 ----HHDRVVLLSLCSSKDCFISGSLD-----------RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLD 165 (304)
Q Consensus 101 ----~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (304)
.......+...|+|.+.++.... |.++.+|. .+.....
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l-------------------------- 157 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRL-------------------------- 157 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEe--------------------------
Confidence 11244567777887655543321 11222221 1111111
Q ss_pred EEEecCCCCCceEEEEecCCcEEEEeeC-CCeEEEEEcCC--CceeE--EEEeCCCCCCcceEEEEcCCCcEEEEecCCC
Q 036585 166 IFSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFR--GTLLS--TYNVKPVSRNSTLEASFSPEGMFVISGSGDG 240 (304)
Q Consensus 166 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~--~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 240 (304)
+..+-..-+.|+||||++.|+.+.. .+.|+-|++.. +.... .+.......+..-.++...+|.+.+++..+|
T Consensus 158 ---~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g 234 (307)
T COG3386 158 ---LDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGG 234 (307)
T ss_pred ---ecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCC
Confidence 1122344577999999988888765 47888887752 21111 1111112345556688888998876655554
Q ss_pred -cEEEEecCCCceeeeeeccCCCCceEEeCC-CCcEEEEec
Q 036585 241 -SVHAWSVRSGKEVASWMSFDTEPPVIKWAP-GSLMFVTGS 279 (304)
Q Consensus 241 -~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~ 279 (304)
.|.+|+.. ++++..+..+...+++++|-- +.+.|+..+
T Consensus 235 ~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 235 GRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred ceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 89999987 999998887778889999854 445444433
No 345
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.51 E-value=0.00031 Score=57.30 Aligned_cols=216 Identities=15% Similarity=0.113 Sum_probs=121.7
Q ss_pred ceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee-------------------------------------------e
Q 036585 59 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY-------------------------------------------S 95 (304)
Q Consensus 59 ~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~-------------------------------------------~ 95 (304)
.|..+.|+++..-|+++.. .|.|.||.....+. .
T Consensus 3 ~v~~vs~a~~t~Elav~~~---~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~ 79 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLE---SGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPL 79 (395)
T ss_dssp -EEEEEEETTTTEEEEEET---TS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEE
T ss_pred eEEEEEecCCCceEEEEcc---CCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCch
Confidence 4778888888888888888 88888876543211 1
Q ss_pred eecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEec---------------cceeEecCCC-----e
Q 036585 96 RYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG---------------RPAAAYDDQG-----L 155 (304)
Q Consensus 96 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------------~~~~~~~~~~-----~ 155 (304)
..+....++|++++.+.= .+++.|..+|.+.|.|+|....+..-.... -..+.+..++ .
T Consensus 80 ~l~~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 80 TLLDAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp EEE---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred hheeccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence 112234678999998744 489999999999999998776655432222 0122234443 4
Q ss_pred EEEecCCCeEEEEecC----------------CCCCceEEE-EecC-C-------------------cEEEEeeCCCeEE
Q 036585 156 VFGYEKGPLDIFSVGG----------------DISDANVVK-FSND-G-------------------RLMLLTTMEGHIH 198 (304)
Q Consensus 156 ~~~~~~~~~~~~~~~~----------------~~~~v~~~~-~~~~-~-------------------~~l~~~~~dg~i~ 198 (304)
+++.+.|.+.+|.+.. +.+++..+. ++.+ | .-+++...+..++
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir 238 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR 238 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence 4567777777776531 233443333 3211 0 1244445567899
Q ss_pred EEEcCCCceeEEEEeCCCCCCcceEEEEc-----CCCcEEEEecCCCcEEEEecCCCceeeeeeccC----CCCceEEeC
Q 036585 199 VLDSFRGTLLSTYNVKPVSRNSTLEASFS-----PEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD----TEPPVIKWA 269 (304)
Q Consensus 199 ~~d~~~~~~~~~~~~~~~~~~~i~~~~~s-----~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~----~~i~~~~~~ 269 (304)
++...+.+...+.. ........+++- ..+..|++-..+|.|++|.+-..+.+..+.-+. ..+....++
T Consensus 239 v~~~~~~k~~~K~~---~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 239 VFKPPKSKGAHKSF---DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp EE-TT---EEEEE----SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred EEeCCCCcccceee---ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 99988777655544 122233334442 356678888899999999999988887775432 235667889
Q ss_pred CCCcEEEEecCc
Q 036585 270 PGSLMFVTGSSE 281 (304)
Q Consensus 270 ~~~~~l~s~~~d 281 (304)
++|..++-.+..
T Consensus 316 ~~Gdi~~~~gps 327 (395)
T PF08596_consen 316 RNGDIFYWTGPS 327 (395)
T ss_dssp TTS-EEEE-SSS
T ss_pred CCCCEEEEeCcc
Confidence 999988777665
No 346
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.48 E-value=6.8e-08 Score=79.25 Aligned_cols=198 Identities=15% Similarity=0.182 Sum_probs=126.7
Q ss_pred cceeEEEEccCCC--eEEEEecCCCCCceEEEEccCcee--eeecccccccEEEEEEcC-CCCEEEEcc----cCCeEEE
Q 036585 58 YGVDLVCFTSHPT--TVIYSSKNGWDESLRLLSLHDNKY--SRYFKGHHDRVVLLSLCS-SKDCFISGS----LDRTVLL 128 (304)
Q Consensus 58 ~~v~~~~~~~~~~--~l~~~~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~----~dg~i~i 128 (304)
..+.|+++.-+.. .+++|.. +|.|-+-.+....- -....++..+.++++|++ |.+.|++|- .|..+.|
T Consensus 57 qy~kcva~~y~~d~cIlavG~a---tG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~I 133 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSA---TGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKI 133 (783)
T ss_pred CCceeehhhcCCchhhhhhccc---cCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccc
Confidence 4577887766544 5666766 89999988765421 234456788999999998 556677663 3567999
Q ss_pred EeCCcceee--ceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCc
Q 036585 129 WDQRAEKCQ--GLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT 206 (304)
Q Consensus 129 wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 206 (304)
||+.+.-.. ....... +......+++|..+.+++.+|.....+.++|++...
T Consensus 134 wdi~s~ltvPke~~~fs~--------------------------~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~ 187 (783)
T KOG1008|consen 134 WDINSLLTVPKESPLFSS--------------------------STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL 187 (783)
T ss_pred eecccccCCCcccccccc--------------------------ccccCccccccccCcchhhcccccchhhhhhhhhhh
Confidence 999876321 1111000 012344578888889999999999999999998433
Q ss_pred eeEEEEeCCCCCCcceEEEEcC-CCcEEEEecCCCcEEEEe-cCCCc-eeeeeecc----CCCCceEEeCCCC-cEEEEe
Q 036585 207 LLSTYNVKPVSRNSTLEASFSP-EGMFVISGSGDGSVHAWS-VRSGK-EVASWMSF----DTEPPVIKWAPGS-LMFVTG 278 (304)
Q Consensus 207 ~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~v~d-~~~~~-~~~~~~~~----~~~i~~~~~~~~~-~~l~s~ 278 (304)
...... ....+..+..+| .++|+++-. ||.|.+|| .++-+ ++..+... ...+..++|.|.. ..+++.
T Consensus 188 ~~~~sv----nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l 262 (783)
T KOG1008|consen 188 DSVSSV----NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVL 262 (783)
T ss_pred hhhhhh----hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhh
Confidence 222111 223445567778 677887765 99999999 44433 23333211 2348899999964 467777
Q ss_pred cCc-eEEeccCC
Q 036585 279 SSE-LSFWIPDL 289 (304)
Q Consensus 279 ~~d-~~iw~~~~ 289 (304)
..| +.|+.++.
T Consensus 263 ~RdS~tIrlydi 274 (783)
T KOG1008|consen 263 SRDSITIRLYDI 274 (783)
T ss_pred ccCcceEEEecc
Confidence 777 44444433
No 347
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.46 E-value=9.8e-06 Score=69.33 Aligned_cols=225 Identities=11% Similarity=0.052 Sum_probs=138.1
Q ss_pred ceeeeecceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEc
Q 036585 10 DKVSLELSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 89 (304)
Q Consensus 10 ~~~~~~~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~ 89 (304)
...+.+.|...+.|+|..-.|+.|-.-|.+.+|...+.+.-.....|..++..+.||++|..++++.. -|.+.+|..
T Consensus 54 r~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~---~g~v~lwr~ 130 (1416)
T KOG3617|consen 54 RDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDN---PGSVHLWRY 130 (1416)
T ss_pred cccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCC---CceeEEEEe
Confidence 33445566667888888888899988999999998877776667789999999999999999999998 899999977
Q ss_pred cCceeeee------------------cc---------------cccccEE-EEEE-------------cCCCCEEEEccc
Q 036585 90 HDNKYSRY------------------FK---------------GHHDRVV-LLSL-------------CSSKDCFISGSL 122 (304)
Q Consensus 90 ~~~~~~~~------------------~~---------------~~~~~v~-~~~~-------------~~~~~~l~~~~~ 122 (304)
..-..++. +. +....+- -.-| .|+|..|+.++.
T Consensus 131 d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~ 210 (1416)
T KOG3617|consen 131 DVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGK 210 (1416)
T ss_pred eeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcC
Confidence 52111110 00 0000000 0001 256778888889
Q ss_pred CCeEEEEeCCcceeeceEEEeccc----------eeEec---CCCeEE-------------------EecCCCeEEEEec
Q 036585 123 DRTVLLWDQRAEKCQGLLRVQGRP----------AAAYD---DQGLVF-------------------GYEKGPLDIFSVG 170 (304)
Q Consensus 123 dg~i~iwd~~~~~~~~~~~~~~~~----------~~~~~---~~~~~~-------------------~~~~~~~~~~~~~ 170 (304)
+|+|+-.|-. +++....+..... ...+. ....++ +...|.+..-.-.
T Consensus 211 ~GtVyyvdq~-g~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEss 289 (1416)
T KOG3617|consen 211 SGTVYYVDQN-GRQRTVHKLDSEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESS 289 (1416)
T ss_pred CceEEEEcCC-CcEEEEEEccchHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccccc
Confidence 9998887733 3332222221110 00000 001111 1111111111000
Q ss_pred -----------CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCC-------CceeEEEEeCCCCCCcceEEEEcCCCcE
Q 036585 171 -----------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR-------GTLLSTYNVKPVSRNSTLEASFSPEGMF 232 (304)
Q Consensus 171 -----------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 232 (304)
.....+++++++..+..+..|...|.+.+|--.. +.....++......+.|+.+.|.|-.+.
T Consensus 290 GvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~ 369 (1416)
T KOG3617|consen 290 GVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKST 369 (1416)
T ss_pred ccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccch
Confidence 0235688999999999999999999999995321 1234444444456678999999996665
Q ss_pred EEEecC
Q 036585 233 VISGSG 238 (304)
Q Consensus 233 l~~~~~ 238 (304)
++.-+.
T Consensus 370 ~avn~~ 375 (1416)
T KOG3617|consen 370 AAVNTE 375 (1416)
T ss_pred hhhhhh
Confidence 555443
No 348
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.45 E-value=0.00022 Score=57.09 Aligned_cols=178 Identities=13% Similarity=0.123 Sum_probs=107.6
Q ss_pred CeEEEEecCCcceeeeecccc-cceeEEE---EccC----CCeEEEEecCC------CC-CceEEEEccCc----eeeee
Q 036585 37 ESIRLYDVTAATCLKTINSKK-YGVDLVC---FTSH----PTTVIYSSKNG------WD-ESLRLLSLHDN----KYSRY 97 (304)
Q Consensus 37 ~~i~vw~~~~~~~~~~~~~~~-~~v~~~~---~~~~----~~~l~~~~~~~------~d-~~i~vwd~~~~----~~~~~ 97 (304)
..|++.|..+.+.+.++.-.. ..+.+++ +..+ ..++++|+.-. .. |.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 368999988888776665432 2344443 3332 46777776410 12 89999999884 12221
Q ss_pred c--ccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcce-eeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCC
Q 036585 98 F--KGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEK-CQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDIS 174 (304)
Q Consensus 98 ~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (304)
+ ....++|++++-. ++ .++++. .+.|.+|++...+ ....-... .
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~------------------------------~ 128 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYD------------------------------S 128 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-------------------------------B
T ss_pred EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheec------------------------------c
Confidence 1 2356789988876 44 344433 4789999998877 22222111 1
Q ss_pred CceEEEEecCCcEEEEeeCCCeEEEEEcCC-CceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecC
Q 036585 175 DANVVKFSNDGRLMLLTTMEGHIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVR 248 (304)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~ 248 (304)
.+........++++++|.....+.++..+. ...+..+... .....++++.|-++++.+++++.+|.+.++...
T Consensus 129 ~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d-~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 129 PFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARD-YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp SSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEE-SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred eEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEec-CCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 223334444467899999888888875543 3323333322 345678888888676799999999999999875
No 349
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.44 E-value=2.8e-06 Score=70.81 Aligned_cols=166 Identities=17% Similarity=0.192 Sum_probs=113.3
Q ss_pred ccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEE
Q 036585 101 HHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVK 180 (304)
Q Consensus 101 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 180 (304)
+...|.--++...+++++.|+.-|.+++|+-..+.... ++.. +..+.+..+.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~-~~~~---------------------------~~~~~~~~~~ 83 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK-LKNE---------------------------GATGITCVRS 83 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhc-cccc---------------------------CccceEEEEE
Confidence 34445545566678899999999999999865544322 2211 2334566678
Q ss_pred EecCCcEEEEeeCCCeEEEEEcCCCceeEEEE---eCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC----cee
Q 036585 181 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN---VKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG----KEV 253 (304)
Q Consensus 181 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~----~~~ 253 (304)
.+++..++|+|+..|.|.++-+....+..... ....|...|++++|++|+..+++|...|.|..-.+.+. ...
T Consensus 84 vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~ 163 (726)
T KOG3621|consen 84 VSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKS 163 (726)
T ss_pred ecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhcccc
Confidence 89999999999999999999987644332222 22236789999999999999999999999998888762 112
Q ss_pred eeeeccCCCCceEEeCCCCcEEEEecCceEEeccCCcccccc
Q 036585 254 ASWMSFDTEPPVIKWAPGSLMFVTGSSELSFWIPDLSKLGAY 295 (304)
Q Consensus 254 ~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~iw~~~~~~~~~~ 295 (304)
..+..-.++|..+... ++.+|++......+.+.+.+++.+.
T Consensus 164 q~il~~ds~IVQlD~~-q~~LLVStl~r~~Lc~tE~eti~QI 204 (726)
T KOG3621|consen 164 QEILSEDSEIVQLDYL-QSYLLVSTLTRCILCQTEAETITQI 204 (726)
T ss_pred ceeeccCcceEEeecc-cceehHhhhhhhheeecchhHHHHh
Confidence 3334456677777653 4455555555566666666655444
No 350
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.41 E-value=0.00075 Score=56.23 Aligned_cols=235 Identities=15% Similarity=0.109 Sum_probs=122.9
Q ss_pred eEeecccCcEEEEe-eCCC----eEEEEecCCcceeeee-cccccceeEEEEccCCCeEEEEecCCC--------CCceE
Q 036585 20 ILQSMEVGIYLVTA-SDDE----SIRLYDVTAATCLKTI-NSKKYGVDLVCFTSHPTTVIYSSKNGW--------DESLR 85 (304)
Q Consensus 20 ~i~~~~~~~~l~~~-~~d~----~i~vw~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~~~--------d~~i~ 85 (304)
...++|+|+++|.+ +..| .++++|+++++.+... ... ....+.|.++++.++....... ...|+
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 46788999998865 3444 4999999999776532 222 2234999999998888775321 33478
Q ss_pred EEEccCceee--eeccccccc--EEEEEEcCCCCEEEEccc---C-CeEEEEeCCcc----eeeceEEEeccceeEecCC
Q 036585 86 LLSLHDNKYS--RYFKGHHDR--VVLLSLCSSKDCFISGSL---D-RTVLLWDQRAE----KCQGLLRVQGRPAAAYDDQ 153 (304)
Q Consensus 86 vwd~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~l~~~~~---d-g~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~ 153 (304)
.|.+.+.... ..+...... ...+..++++++++.... + ..+.+.|+... .....+..
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~----------- 274 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP----------- 274 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE-----------
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC-----------
Confidence 8888765432 334433332 567888999998775432 2 45777777764 11111111
Q ss_pred CeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEe---eCCCeEEEEEcCCCce---eEEEEeCCCCCC--cceEEE
Q 036585 154 GLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLT---TMEGHIHVLDSFRGTL---LSTYNVKPVSRN--STLEAS 225 (304)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~~~d~~~~~~---~~~~~~~~~~~~--~i~~~~ 225 (304)
....+....-+..+.+++.. ...+.|.-.++.+... ...+. .+.. .+..+.
T Consensus 275 ------------------~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~---~~~~~~~l~~~~ 333 (414)
T PF02897_consen 275 ------------------REDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI---PEDEDVSLEDVS 333 (414)
T ss_dssp ------------------SSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEE
T ss_pred ------------------CCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEc---CCCCceeEEEEE
Confidence 11122222222234444333 2346777788776653 22332 2333 344444
Q ss_pred EcCCCcEEEEe-cCCC--cEEEEecCCCceeeeeec-cCCCCceEEeCCCCcEE-EEe-cCc--eEEeccCCc
Q 036585 226 FSPEGMFVISG-SGDG--SVHAWSVRSGKEVASWMS-FDTEPPVIKWAPGSLMF-VTG-SSE--LSFWIPDLS 290 (304)
Q Consensus 226 ~s~~~~~l~~~-~~dg--~i~v~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l-~s~-~~d--~~iw~~~~~ 290 (304)
..+++|+.. ..++ .|+++++..+.....+.. -.+.|..+...+++..+ ++. |.- -.+|.++..
T Consensus 334 --~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~ 404 (414)
T PF02897_consen 334 --LFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLA 404 (414)
T ss_dssp --EETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETT
T ss_pred --EECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECC
Confidence 444455544 3343 589999883444444332 23345566655655433 222 222 566655543
No 351
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.41 E-value=1.6e-05 Score=69.27 Aligned_cols=138 Identities=17% Similarity=0.234 Sum_probs=92.5
Q ss_pred CCceEEEEccCceeeeeccccccc-EEEEEEcC-----CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCC
Q 036585 81 DESLRLLSLHDNKYSRYFKGHHDR-VVLLSLCS-----SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQG 154 (304)
Q Consensus 81 d~~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 154 (304)
...|+-.|++.|+.+..+..|... |..++-.. +...-+.|-.+..+..||.|-... ........
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-k~v~~~~k--------- 572 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-KLVDSQSK--------- 572 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC-ceeecccc---------
Confidence 678999999999999999877653 55443221 123455666778899999985431 11110000
Q ss_pred eEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEE
Q 036585 155 LVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVI 234 (304)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 234 (304)
-| ......+|++-+.+| +||+|+.+|.||+|| +.++..++. .++...+|..+..+.||++|+
T Consensus 573 -----------~Y---~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd-~~g~~AKT~--lp~lG~pI~~iDvt~DGkwil 634 (794)
T PF08553_consen 573 -----------QY---SSKNNFSCFATTEDG-YIAVGSNKGDIRLYD-RLGKRAKTA--LPGLGDPIIGIDVTADGKWIL 634 (794)
T ss_pred -----------cc---ccCCCceEEEecCCc-eEEEEeCCCcEEeec-ccchhhhhc--CCCCCCCeeEEEecCCCcEEE
Confidence 00 123456777777777 499999999999999 444332222 225678999999999999988
Q ss_pred EecCCCcEEEEec
Q 036585 235 SGSGDGSVHAWSV 247 (304)
Q Consensus 235 ~~~~dg~i~v~d~ 247 (304)
+.+ +..+.++++
T Consensus 635 aTc-~tyLlLi~t 646 (794)
T PF08553_consen 635 ATC-KTYLLLIDT 646 (794)
T ss_pred Eee-cceEEEEEE
Confidence 776 456777775
No 352
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.40 E-value=0.00051 Score=53.75 Aligned_cols=222 Identities=13% Similarity=0.131 Sum_probs=128.8
Q ss_pred ccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeec------
Q 036585 25 EVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYF------ 98 (304)
Q Consensus 25 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~------ 98 (304)
..++.|+.|..+| +.+++.........+. +...|..+...|+-+.+++-+ |+.++++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs----d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS----DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc----CCccEEEEchhhcccccccccccc
Confidence 4578999999998 8999983322222222 222499999999998888887 899999998764433311
Q ss_pred --------ccccccEEEEE--EcCCCCEEEEcccCCeEEEEeCCcce-----eeceEEEeccceeEecCCCeEEEecCCC
Q 036585 99 --------KGHHDRVVLLS--LCSSKDCFISGSLDRTVLLWDQRAEK-----CQGLLRVQGRPAAAYDDQGLVFGYEKGP 163 (304)
Q Consensus 99 --------~~~~~~v~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (304)
......+...+ -.+.+...++......|.+|...... ..+.+.
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~---------------------- 136 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS---------------------- 136 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE----------------------
Confidence 11223444444 11233344444445688888876532 222222
Q ss_pred eEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCC---------CCCcceEEEEcCCCcEEE
Q 036585 164 LDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV---------SRNSTLEASFSPEGMFVI 234 (304)
Q Consensus 164 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~---------~~~~i~~~~~s~~~~~l~ 234 (304)
-...+..++|. ++.+++|..+ ...+.|+.++.....+..... ...++..+..+ ++.+|+
T Consensus 137 --------lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll 204 (275)
T PF00780_consen 137 --------LPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLL 204 (275)
T ss_pred --------cCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEE
Confidence 12467778887 5567777655 477889887766544431110 11234434443 456666
Q ss_pred EecCCCcEEEEecCCCceee--eeeccCCCCceEEeCCCCcEEEEecCc-eEEeccCCccc
Q 036585 235 SGSGDGSVHAWSVRSGKEVA--SWMSFDTEPPVIKWAPGSLMFVTGSSE-LSFWIPDLSKL 292 (304)
Q Consensus 235 ~~~~dg~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~~~~~~ 292 (304)
+- |..-.+.| ..|++.+ .+.- ...+..+++ ...+|+..+.+ +.||++...++
T Consensus 205 ~~--~~~g~fv~-~~G~~~r~~~i~W-~~~p~~~~~--~~pyli~~~~~~iEV~~~~~~~l 259 (275)
T PF00780_consen 205 CY--DNIGVFVN-KNGEPSRKSTIQW-SSAPQSVAY--SSPYLIAFSSNSIEVRSLETGEL 259 (275)
T ss_pred Ee--cceEEEEc-CCCCcCcccEEEc-CCchhEEEE--ECCEEEEECCCEEEEEECcCCcE
Confidence 54 33333334 3554433 2222 335566666 34577777777 99999876554
No 353
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.37 E-value=0.00048 Score=52.20 Aligned_cols=201 Identities=12% Similarity=0.111 Sum_probs=111.6
Q ss_pred eeeEeeccc-CcEEEEeeCCCeEEEEecCCcceeeeeccc-ccceeEEEEccCCCeEEEEecCCCCCceEEEEccCce--
Q 036585 18 EEILQSMEV-GIYLVTASDDESIRLYDVTAATCLKTINSK-KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK-- 93 (304)
Q Consensus 18 ~~~i~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~-- 93 (304)
...+++.|+ +.++++....+.|..++. +|+.++.+... .+..-.+++..++.++++.-. ++.+.++++....
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er---~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEER---DQRLYIFTIDDDTTS 99 (248)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETT---TTEEEEEEE----TT
T ss_pred ccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcC---CCcEEEEEEeccccc
Confidence 456888887 456677777788888886 47888776543 246778888877766665544 8889999884321
Q ss_pred ----eeeecc-----cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcce---eeceEEEeccceeEecCCCeEEEecC
Q 036585 94 ----YSRYFK-----GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEK---CQGLLRVQGRPAAAYDDQGLVFGYEK 161 (304)
Q Consensus 94 ----~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (304)
....+. .+...+..++|.|.++.|+.+-......+|.+.... ............
T Consensus 100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~-------------- 165 (248)
T PF06977_consen 100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD-------------- 165 (248)
T ss_dssp --EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH---------------
T ss_pred cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccc--------------
Confidence 111111 244568999999987777777666666666654311 111111000000
Q ss_pred CCeEEEEecCCCCCceEEEEecC-CcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCC------CCcceEEEEcCCCcEEE
Q 036585 162 GPLDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS------RNSTLEASFSPEGMFVI 234 (304)
Q Consensus 162 ~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~------~~~i~~~~~s~~~~~l~ 234 (304)
.......+..++++|. +.+++.+..+..|..+| .+|+.+..+....+. -...-.++|.++|++.+
T Consensus 166 -------~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI 237 (248)
T PF06977_consen 166 -------DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI 237 (248)
T ss_dssp -------HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred -------ccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE
Confidence 0112345788999985 56777778888999999 788888877754322 13567899999996555
Q ss_pred EecCCCcEEEE
Q 036585 235 SGSGDGSVHAW 245 (304)
Q Consensus 235 ~~~~dg~i~v~ 245 (304)
+. +-+..++|
T Consensus 238 vs-EpNlfy~f 247 (248)
T PF06977_consen 238 VS-EPNLFYRF 247 (248)
T ss_dssp EE-TTTEEEEE
T ss_pred Ec-CCceEEEe
Confidence 54 55555544
No 354
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.35 E-value=0.00039 Score=58.98 Aligned_cols=217 Identities=16% Similarity=0.172 Sum_probs=124.5
Q ss_pred CcEEEEeeCCCeEEEEecCCcceeeeeccccc------cee--EEEEccCCCeEEEEecCCCCCceEEEEccCceeeeec
Q 036585 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKY------GVD--LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYF 98 (304)
Q Consensus 27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~ 98 (304)
+..++.++.++.+.-.|..+++.+-++..... .+. .++.. ++..++.++. ++.|+-+|.++++.+..+
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~---~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTF---DGRLVALDAETGKQVWKF 136 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecC---CCeEEEEECCCCCEeeee
Confidence 56677788889999999999988766543321 000 01111 2267777776 999999999999987666
Q ss_pred cccccc--EEEEEEcC--CCCEEEEcc---------cCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeE
Q 036585 99 KGHHDR--VVLLSLCS--SKDCFISGS---------LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLD 165 (304)
Q Consensus 99 ~~~~~~--v~~~~~~~--~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (304)
...... -..+.-+| .+..++.++ .++.+..+|..+++....+.............+ ....
T Consensus 137 ~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~-------~~~~ 209 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWG-------PDRQ 209 (488)
T ss_pred cCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCC-------CCcc
Confidence 532210 00111111 123455543 368899999999998877765321110000000 0000
Q ss_pred EEEecCCCCCceEEEEecCCcEEEEeeCCC------------------eEEEEEcCCCceeEEEEeCCCCCC----cceE
Q 036585 166 IFSVGGDISDANVVKFSNDGRLMLLTTMEG------------------HIHVLDSFRGTLLSTYNVKPVSRN----STLE 223 (304)
Q Consensus 166 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------------------~i~~~d~~~~~~~~~~~~~~~~~~----~i~~ 223 (304)
.+ .......-...++.+.+..+++++.++ .|.-+|..+|+....++... +.. ....
T Consensus 210 ~~-~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~-~~~~~~~~~s~ 287 (488)
T cd00216 210 MW-GPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTP-HDLWDYDGPNQ 287 (488)
T ss_pred ee-cCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCC-CCCcccccCCC
Confidence 00 000000112345555566677776554 79999999999998876421 110 0000
Q ss_pred EEEc----CCCc---EEEEecCCCcEEEEecCCCceeeee
Q 036585 224 ASFS----PEGM---FVISGSGDGSVHAWSVRSGKEVASW 256 (304)
Q Consensus 224 ~~~s----~~~~---~l~~~~~dg~i~v~d~~~~~~~~~~ 256 (304)
..+. -++. .++.++.+|.++..|.++++.+-..
T Consensus 288 p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 288 PSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISAR 327 (488)
T ss_pred CeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEe
Confidence 1111 1333 6788889999999999999987654
No 355
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.28 E-value=1.8e-07 Score=76.89 Aligned_cols=190 Identities=11% Similarity=0.117 Sum_probs=121.5
Q ss_pred CcEEEEeeCCCeEEEEecCCcc--eeeeecccccceeEEEEccC-CCeEEEEecC-CCCCceEEEEccCc--eeeee--c
Q 036585 27 GIYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSH-PTTVIYSSKN-GWDESLRLLSLHDN--KYSRY--F 98 (304)
Q Consensus 27 ~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~-~~d~~i~vwd~~~~--~~~~~--~ 98 (304)
..+++.|..+|.|-+-...... -.....++..+.++++|++- .+.|++|-.. ..|..+.|||+.++ .+... +
T Consensus 70 ~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~f 149 (783)
T KOG1008|consen 70 RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLF 149 (783)
T ss_pred hhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccccc
Confidence 3578899999999988765432 12345567788999999984 4566666431 12778999999876 22211 2
Q ss_pred cc-ccccEEEEEEcCCCCEEEEcccCCeEEEEeCCccee-eceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCc
Q 036585 99 KG-HHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKC-QGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDA 176 (304)
Q Consensus 99 ~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 176 (304)
.+ ......+++|..+.+++++|...+.+.++|++.... ...+ .+..+
T Consensus 150 s~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv-------------------------------nTk~v 198 (783)
T KOG1008|consen 150 SSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV-------------------------------NTKYV 198 (783)
T ss_pred ccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh-------------------------------hhhhc
Confidence 21 223455788888888999999989999999984322 1111 12345
Q ss_pred eEEEEec-CCcEEEEeeCCCeEEEEEc-CCC-ceeEEEE-eCCCCCCcceEEEEcCCCc-EEEEecC-CCcEEEEecC
Q 036585 177 NVVKFSN-DGRLMLLTTMEGHIHVLDS-FRG-TLLSTYN-VKPVSRNSTLEASFSPEGM-FVISGSG-DGSVHAWSVR 248 (304)
Q Consensus 177 ~~~~~~~-~~~~l~~~~~dg~i~~~d~-~~~-~~~~~~~-~~~~~~~~i~~~~~s~~~~-~l~~~~~-dg~i~v~d~~ 248 (304)
..+..+| .+.+++.-. ||.|-+||. ++- .++..+. ........+..++|+|-.. .+++... .++|+.+|+.
T Consensus 199 qG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 199 QGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 5677888 667666555 999999993 322 1222221 1111233588999999433 4455554 4689999985
No 356
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.25 E-value=5.8e-05 Score=65.93 Aligned_cols=99 Identities=13% Similarity=0.154 Sum_probs=70.9
Q ss_pred EEEEeeCCCeEEEEEcCCCc--eeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCce-eeeeeccCCCC
Q 036585 187 LMLLTTMEGHIHVLDSFRGT--LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKE-VASWMSFDTEP 263 (304)
Q Consensus 187 ~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~i 263 (304)
.-++|-.+..+..||.|-.. .+......-.......|++-+.+| +||+|+.+|.||+||- .++. ...+++-..+|
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI 621 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPI 621 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCe
Confidence 35667777889999988542 221111011245567778877776 7999999999999994 4443 33456778999
Q ss_pred ceEEeCCCCcEEEEecCc-eEEecc
Q 036585 264 PVIKWAPGSLMFVTGSSE-LSFWIP 287 (304)
Q Consensus 264 ~~~~~~~~~~~l~s~~~d-~~iw~~ 287 (304)
..|..+.||++++..+.. +.+++.
T Consensus 622 ~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 622 IGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred eEEEecCCCcEEEEeecceEEEEEE
Confidence 999999999999888888 767665
No 357
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.22 E-value=0.00079 Score=53.96 Aligned_cols=182 Identities=18% Similarity=0.197 Sum_probs=104.7
Q ss_pred CcEEEEeeC----------CCeEEEEecCCc----ceeeee--cccccceeEEEEccCCCeEEEEecCCCCCceEEEEcc
Q 036585 27 GIYLVTASD----------DESIRLYDVTAA----TCLKTI--NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH 90 (304)
Q Consensus 27 ~~~l~~~~~----------d~~i~vw~~~~~----~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~ 90 (304)
-.+|+.|.. .|.|.++++.+. ..+..+ ....++|++++-- +.+|+++. .+.|.+|++.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~----g~~l~v~~l~ 115 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVVAV----GNKLYVYDLD 115 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEEEE----TTEEEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEEee----cCEEEEEEcc
Confidence 467777753 288999999874 122222 1235788888765 44566666 7899999998
Q ss_pred Cce-eeeecc-cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCc-ceeeceEEEeccceeEecCCCeEEEecCCCeEEE
Q 036585 91 DNK-YSRYFK-GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRA-EKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIF 167 (304)
Q Consensus 91 ~~~-~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (304)
..+ ....-. .....+.++... +++++.|.....+.++..+. ......+...
T Consensus 116 ~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d------------------------ 169 (321)
T PF03178_consen 116 NSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARD------------------------ 169 (321)
T ss_dssp TTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEE------------------------
T ss_pred CcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEec------------------------
Confidence 877 332222 122255565554 55899998888788775443 1212222211
Q ss_pred EecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCC-------Cc--eeEEEEeCCCCCCcceEE---EEcC--CC---
Q 036585 168 SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR-------GT--LLSTYNVKPVSRNSTLEA---SFSP--EG--- 230 (304)
Q Consensus 168 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------~~--~~~~~~~~~~~~~~i~~~---~~s~--~~--- 230 (304)
.....++++.|-++++.++++..+|.+.++.... +. ....... .....|+++ ++.| .+
T Consensus 170 ---~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f--~lg~~v~~~~~~~l~~~~~~~~~ 244 (321)
T PF03178_consen 170 ---YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSF--HLGDIVNSFRRGSLIPRSGSSES 244 (321)
T ss_dssp ---SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEE--E-SS-EEEEEE--SS--SSSS-T
T ss_pred ---CCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEE--ECCCccceEEEEEeeecCCCCcc
Confidence 1223467788886667899999999999988752 22 2222221 144567766 5555 12
Q ss_pred ---cEEEEecCCCcEEEE
Q 036585 231 ---MFVISGSGDGSVHAW 245 (304)
Q Consensus 231 ---~~l~~~~~dg~i~v~ 245 (304)
..++.++.+|.|.+.
T Consensus 245 ~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 245 PNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp TEEEEEEEEETTS-EEEE
T ss_pred cccceEEEEecCCEEEEE
Confidence 247777789988844
No 358
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1.3e-05 Score=66.15 Aligned_cols=93 Identities=17% Similarity=0.288 Sum_probs=76.3
Q ss_pred CCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcce-EEEEcCCCcEEEEecCCCcEEEEecCCCce
Q 036585 174 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTL-EASFSPEGMFVISGSGDGSVHAWSVRSGKE 252 (304)
Q Consensus 174 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~ 252 (304)
..+..+.|+|.-.++|.+..+|.|.+..+. .+.+.++. .++..++ +++|.|||+.||.|-.||+|++.|..++..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip---~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIP---IPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEecc---CCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 456779999999999999999999999887 77777776 3555666 999999999999999999999999999887
Q ss_pred eeee-eccCCCCceEEeCC
Q 036585 253 VASW-MSFDTEPPVIKWAP 270 (304)
Q Consensus 253 ~~~~-~~~~~~i~~~~~~~ 270 (304)
+... ......|.++-|.+
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 6663 22456677777863
No 359
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.13 E-value=0.00061 Score=58.65 Aligned_cols=210 Identities=14% Similarity=0.097 Sum_probs=108.5
Q ss_pred CCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEec-----CCCCCceEEEEccCceeeeecccccccEEEEEE
Q 036585 36 DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK-----NGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSL 110 (304)
Q Consensus 36 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 110 (304)
+|.+.-.+-..-..+.-..+....+...+++|+++.+++... ......|.+++.. +.......+ .....-.|
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsW 404 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSW 404 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceE
Confidence 565544432222222222233346788999999999888762 1112355555642 222222222 23788899
Q ss_pred cCCCCEEEEcccC-CeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEE
Q 036585 111 CSSKDCFISGSLD-RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLML 189 (304)
Q Consensus 111 ~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 189 (304)
+|+|+.+++.... ..+++.+-.....+..+..... .... .....|..+.|||||..++
T Consensus 405 spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~g-----------------e~~~----~~~g~Issl~wSpDG~RiA 463 (591)
T PRK13616 405 SLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDAS-----------------AVAS----RVPGPISELQLSRDGVRAA 463 (591)
T ss_pred CCCCCceEEEecCcceEEEeccCCCceEEEEeccCc-----------------hhhh----ccCCCcCeEEECCCCCEEE
Confidence 9998887776543 2233332211111111111100 0000 1235699999999999888
Q ss_pred EeeCCCeEEE---EEcCCCceeE--EEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecC-CCceeeeeec--cCC
Q 036585 190 LTTMEGHIHV---LDSFRGTLLS--TYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVR-SGKEVASWMS--FDT 261 (304)
Q Consensus 190 ~~~~dg~i~~---~d~~~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~--~~~ 261 (304)
... +|+|++ -....|.... ...........+..+.|.+++.++ .+..++.-.+|.+. +|.....+.. ...
T Consensus 464 ~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~ 541 (591)
T PRK13616 464 MII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSA 541 (591)
T ss_pred EEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccC
Confidence 766 477777 4444554111 111111233446789999999855 54444444455442 2322222222 256
Q ss_pred CCceEEeCCC
Q 036585 262 EPPVIKWAPG 271 (304)
Q Consensus 262 ~i~~~~~~~~ 271 (304)
++..++=+++
T Consensus 542 ~v~~vaa~~~ 551 (591)
T PRK13616 542 PVVAVAASPS 551 (591)
T ss_pred ceEEEecCCc
Confidence 6777777763
No 360
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=2.6e-05 Score=64.50 Aligned_cols=96 Identities=14% Similarity=0.076 Sum_probs=79.0
Q ss_pred eeecceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeeccccccee-EEEEccCCCeEEEEecCCCCCceEEEEccC
Q 036585 13 SLELSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVD-LVCFTSHPTTVIYSSKNGWDESLRLLSLHD 91 (304)
Q Consensus 13 ~~~~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~ 91 (304)
.+......+.|.|--+++|++..+|.|.+..++ .+.+.++..|...+. +++|.|||+.|++|-. ||+|++.|+++
T Consensus 18 ~l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~k---dG~I~L~Dve~ 93 (665)
T KOG4640|consen 18 SLPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFK---DGTIRLHDVEK 93 (665)
T ss_pred ccccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEec---CCeEEEEEccC
Confidence 344456678899999999999999999999987 777888887777777 9999999999999999 99999999999
Q ss_pred ceeeeecc-cccccEEEEEEcC
Q 036585 92 NKYSRYFK-GHHDRVVLLSLCS 112 (304)
Q Consensus 92 ~~~~~~~~-~~~~~v~~~~~~~ 112 (304)
+..+..+. .....|.++-|.+
T Consensus 94 ~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 94 GGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred CCceeccccccccchheeeccc
Confidence 88776632 2445777777763
No 361
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.06 E-value=0.0049 Score=51.38 Aligned_cols=203 Identities=14% Similarity=0.091 Sum_probs=108.0
Q ss_pred ceeEEEEccCCCeEEEEecC-C-CCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccC-----------Ce
Q 036585 59 GVDLVCFTSHPTTVIYSSKN-G-WDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLD-----------RT 125 (304)
Q Consensus 59 ~v~~~~~~~~~~~l~~~~~~-~-~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------g~ 125 (304)
.+....++|++++++.+-+. | ....++++|+.+++.+...-.. .....+.|.++++.|+....+ ..
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 34467899999999987542 1 1256999999999765532111 122349999998876655422 24
Q ss_pred EEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC---C-CeEEEEE
Q 036585 126 VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM---E-GHIHVLD 201 (304)
Q Consensus 126 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d-g~i~~~d 201 (304)
|+.|.+.+......+-.. -.........+..+++++++++... + ..+++.|
T Consensus 204 v~~~~~gt~~~~d~lvfe-------------------------~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d 258 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFE-------------------------EPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLD 258 (414)
T ss_dssp EEEEETTS-GGG-EEEEC--------------------------TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEE
T ss_pred EEEEECCCChHhCeeEEe-------------------------ecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEe
Confidence 677777665443222111 1111112456888999998886443 2 4588888
Q ss_pred cCCC----ceeEEEEeCCCCCCcceEEEEcCCCcEEEEec---CCCcEEEEecCCCce---eeeeeccCCC--CceEEeC
Q 036585 202 SFRG----TLLSTYNVKPVSRNSTLEASFSPEGMFVISGS---GDGSVHAWSVRSGKE---VASWMSFDTE--PPVIKWA 269 (304)
Q Consensus 202 ~~~~----~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~v~d~~~~~~---~~~~~~~~~~--i~~~~~~ 269 (304)
+..+ .....+.. ...+....+... .+.+++... .++.|.-.++.+... ...+..+... +..+..
T Consensus 259 ~~~~~~~~~~~~~l~~--~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~- 334 (414)
T PF02897_consen 259 LDDGGSPDAKPKLLSP--REDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL- 334 (414)
T ss_dssp CCCTTTSS-SEEEEEE--SSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE-
T ss_pred ccccCCCcCCcEEEeC--CCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE-
Confidence 8774 22233331 122222333333 444444442 345677778877653 2244555543 444443
Q ss_pred CCCcEEE-EecCc----eEEeccC-Cccc
Q 036585 270 PGSLMFV-TGSSE----LSFWIPD-LSKL 292 (304)
Q Consensus 270 ~~~~~l~-s~~~d----~~iw~~~-~~~~ 292 (304)
.+.+|+ ..-.+ ++++++. ....
T Consensus 335 -~~~~Lvl~~~~~~~~~l~v~~~~~~~~~ 362 (414)
T PF02897_consen 335 -FKDYLVLSYRENGSSRLRVYDLDDGKES 362 (414)
T ss_dssp -ETTEEEEEEEETTEEEEEEEETT-TEEE
T ss_pred -ECCEEEEEEEECCccEEEEEECCCCcEE
Confidence 333443 33333 7788877 4443
No 362
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.05 E-value=0.0034 Score=49.45 Aligned_cols=202 Identities=15% Similarity=0.154 Sum_probs=116.1
Q ss_pred EEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEE
Q 036585 63 VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV 142 (304)
Q Consensus 63 ~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 142 (304)
..|.++...|+.+.-. .+.|.-|+..+++. ..+. +.+.+.++.....+..|+++.. -+.+++.+++.....+..
T Consensus 30 P~w~~~~~~L~w~DI~--~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 30 PVWDPDRGALLWVDIL--GGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAE 103 (307)
T ss_pred ccCcCCCCEEEEEeCC--CCeEEEecCCcCce-EEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecc
Confidence 3566777766655542 78888898876642 2233 2333445444444445555543 356666655444222211
Q ss_pred eccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC-----------CCeEEEEEcCCCceeEEE
Q 036585 143 QGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM-----------EGHIHVLDSFRGTLLSTY 211 (304)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~~~d~~~~~~~~~~ 211 (304)
... .......+.+...|+|.+.+.... -|.++.+|. .+...+..
T Consensus 104 ~~~------------------------~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~ 158 (307)
T COG3386 104 PED------------------------GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLL 158 (307)
T ss_pred ccC------------------------CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEee
Confidence 100 011234566778888875554322 134555554 45555444
Q ss_pred EeCCCCCCcceEEEEcCCCcEEEEecC-CCcEEEEecCC--Cce-----eeeeeccCCCCceEEeCCCCcEEEEecC---
Q 036585 212 NVKPVSRNSTLEASFSPEGMFVISGSG-DGSVHAWSVRS--GKE-----VASWMSFDTEPPVIKWAPGSLMFVTGSS--- 280 (304)
Q Consensus 212 ~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~v~d~~~--~~~-----~~~~~~~~~~i~~~~~~~~~~~l~s~~~--- 280 (304)
. .+-..-+.++||||++.|+.+.. .+.|+-|++.. +.. ........+..-.++...+|.+.+++-.
T Consensus 159 ~---~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~ 235 (307)
T COG3386 159 D---DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGG 235 (307)
T ss_pred c---CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCc
Confidence 4 33455677999999988887754 47788887752 211 1122234566677888888888755544
Q ss_pred ceEEeccCCccccccccC
Q 036585 281 ELSFWIPDLSKLGAYVGR 298 (304)
Q Consensus 281 d~~iw~~~~~~~~~~~~~ 298 (304)
.+..|+.+.+.+..+.-.
T Consensus 236 ~v~~~~pdG~l~~~i~lP 253 (307)
T COG3386 236 RVVRFNPDGKLLGEIKLP 253 (307)
T ss_pred eEEEECCCCcEEEEEECC
Confidence 389999997776665443
No 363
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=98.05 E-value=0.0069 Score=53.89 Aligned_cols=214 Identities=12% Similarity=0.140 Sum_probs=121.9
Q ss_pred CcEEEEeeCCCeEEEEecCCcceeeeecccccc--------eeEEEEc----------------cCCCeEEEEecCCCCC
Q 036585 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYG--------VDLVCFT----------------SHPTTVIYSSKNGWDE 82 (304)
Q Consensus 27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~--------v~~~~~~----------------~~~~~l~~~~~~~~d~ 82 (304)
+..|+.++.++.|.-.|..+|+.+-++...... ...+++. ..+..++.++. |+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~---Dg 270 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTS---DA 270 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecC---CC
Confidence 677888888899999999999887666532210 1122221 13447788877 99
Q ss_pred ceEEEEccCceeeeecccccccE-------------EEEEEcC--CCCEEEEccc----------CCeEEEEeCCcceee
Q 036585 83 SLRLLSLHDNKYSRYFKGHHDRV-------------VLLSLCS--SKDCFISGSL----------DRTVLLWDQRAEKCQ 137 (304)
Q Consensus 83 ~i~vwd~~~~~~~~~~~~~~~~v-------------~~~~~~~--~~~~l~~~~~----------dg~i~iwd~~~~~~~ 137 (304)
.+.-.|.++|+....+.. .+.| ..+.-.| -+..++.++. +|.|+-+|.++++..
T Consensus 271 ~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 271 RLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred eEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 999999999998766532 1111 0111112 1335555532 688999999999998
Q ss_pred ceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEE------------------eeCCCeEEE
Q 036585 138 GLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLL------------------TTMEGHIHV 199 (304)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~------------------~~~dg~i~~ 199 (304)
..+.............+..+.. +.-..| ...++++....++. ....+.|.-
T Consensus 350 W~~~~g~p~~~~~~~~g~~~~~--gg~n~W---------~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA 418 (764)
T TIGR03074 350 WAWDPGNPDPTAPPAPGETYTR--NTPNSW---------SVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA 418 (764)
T ss_pred eEEecCCCCcccCCCCCCEecc--CCCCcc---------CceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence 8876432111000011111100 000000 11222222211111 112456788
Q ss_pred EEcCCCceeEEEEeCCCCC-------CcceEEEEcC-CCc---EEEEecCCCcEEEEecCCCceeeee
Q 036585 200 LDSFRGTLLSTYNVKPVSR-------NSTLEASFSP-EGM---FVISGSGDGSVHAWSVRSGKEVASW 256 (304)
Q Consensus 200 ~d~~~~~~~~~~~~~~~~~-------~~i~~~~~s~-~~~---~l~~~~~dg~i~v~d~~~~~~~~~~ 256 (304)
.|.++|+....++..+ |+ ....-+.+.. +|+ .++.++.+|.++++|.++++++...
T Consensus 419 LD~~TGk~~W~~Q~~~-hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 419 LDATTGKERWVFQTVH-HDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred EeCCCCceEEEecccC-CccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 8999999988887421 11 1111122333 553 7899999999999999999987654
No 364
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.03 E-value=1.7e-05 Score=40.70 Aligned_cols=38 Identities=29% Similarity=0.482 Sum_probs=33.3
Q ss_pred eeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEe
Q 036585 93 KYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWD 130 (304)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 130 (304)
++...+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44566677888999999999999999999999999996
No 365
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.03 E-value=0.0068 Score=51.92 Aligned_cols=109 Identities=15% Similarity=0.059 Sum_probs=67.7
Q ss_pred CcEEEEeeCCCeEEEEecCCcceeeeecccc-ccee----------EEEEccCCCeEEEEecCCCCCceEEEEccCceee
Q 036585 27 GIYLVTASDDESIRLYDVTAATCLKTINSKK-YGVD----------LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYS 95 (304)
Q Consensus 27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~-~~v~----------~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~ 95 (304)
+..++.++.++.|.-.|..+++.+-++.... ..+. .+++ .+..++.++. |+.+.-.|..+|+.+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~---dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTL---DARLVALDAKTGKVV 143 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcC---CCEEEEEECCCCCEE
Confidence 5677777788899999999999886654321 1111 1122 2346677776 999999999999987
Q ss_pred eeccccccc-EEEEEEcC---CCCEEEEcc------cCCeEEEEeCCcceeeceEE
Q 036585 96 RYFKGHHDR-VVLLSLCS---SKDCFISGS------LDRTVLLWDQRAEKCQGLLR 141 (304)
Q Consensus 96 ~~~~~~~~~-v~~~~~~~---~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~ 141 (304)
......... -..+.-+| ++ .++.+. .+|.|.-+|.++++.+..+.
T Consensus 144 W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred eecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 655421100 00111112 34 444443 36899999999998876643
No 366
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.01 E-value=0.0039 Score=49.91 Aligned_cols=244 Identities=14% Similarity=0.086 Sum_probs=103.9
Q ss_pred ecccCcEEEEee-CCC--eEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc
Q 036585 23 SMEVGIYLVTAS-DDE--SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK 99 (304)
Q Consensus 23 ~~~~~~~l~~~~-~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~ 99 (304)
|..+|+.|+.++ .|| .+.+.|+.+++..+.-.+.........++|+.+.++.... ...|+-.|+.+.+....+.
T Consensus 43 ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~---~~~l~~vdL~T~e~~~vy~ 119 (386)
T PF14583_consen 43 FTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKN---GRSLRRVDLDTLEERVVYE 119 (386)
T ss_dssp B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEET---TTEEEEEETTT--EEEEEE
T ss_pred cCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEEC---CCeEEEEECCcCcEEEEEE
Confidence 456786655554 455 4667788888766655543333335677888888887765 6788999999987666665
Q ss_pred cccccEEEEEEc--CCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCce
Q 036585 100 GHHDRVVLLSLC--SSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDAN 177 (304)
Q Consensus 100 ~~~~~v~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 177 (304)
.....+-...|. .++..++-.-.... .......... -.....-.+...++..+...-....+-....-+.
T Consensus 120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~-------d~~~l~~~~~-f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlg 191 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCTKLVGIEISRE-------DWKPLTKWKG-FREFYEARPHCRIFTIDLKTGERKVVFEDTDWLG 191 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEEEEEEGG-------G-----SHHH-HHHHHHC---EEEEEEETTT--EEEEEEESS-EE
T ss_pred CCcccccccceeeCCCccEEEEEEEeeh-------hccCccccHH-HHHHHhhCCCceEEEEECCCCceeEEEecCcccc
Confidence 555555445554 34444332211000 0000000000 0000000011111111111111111112334567
Q ss_pred EEEEecCCcEEEEeeCCC-------eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEE-----ecCCCcEEEE
Q 036585 178 VVKFSNDGRLMLLTTMEG-------HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS-----GSGDGSVHAW 245 (304)
Q Consensus 178 ~~~~~~~~~~l~~~~~dg-------~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-----~~~dg~i~v~ 245 (304)
.+.|+|....+++=|.+| +|.+.+..... ...+... .....+.-=-|.|||..|.- ++.+..|.-+
T Consensus 192 H~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~-~~~v~~~-~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~ 269 (386)
T PF14583_consen 192 HVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN-VKKVHRR-MEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGY 269 (386)
T ss_dssp EEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE
T ss_pred CcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc-ceeeecC-CCCcccccccccCCCCEEEEEeecCCCCceEEEee
Confidence 789999665555544332 44444533322 2222211 12334444568999987653 2335567888
Q ss_pred ecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc
Q 036585 246 SVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE 281 (304)
Q Consensus 246 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 281 (304)
|+.+++...... ..+...+--++||++++-=+.|
T Consensus 270 d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 270 DPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp -TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE--
T ss_pred CCCCCCceEEEe--CCceeeeEEcCCCCEEEecCCC
Confidence 888876533222 1234456667899888654443
No 367
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.01 E-value=0.001 Score=57.39 Aligned_cols=105 Identities=14% Similarity=0.161 Sum_probs=61.5
Q ss_pred ceEEEEecCCcEEEEeeCC------------CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEE
Q 036585 176 ANVVKFSNDGRLMLLTTME------------GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVH 243 (304)
Q Consensus 176 v~~~~~~~~~~~l~~~~~d------------g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 243 (304)
.+.-.|+|+|+.+++.... +.+.+.++..++... . ....|..+.|||||..++... ++.|+
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~----~~g~Issl~wSpDG~RiA~i~-~g~v~ 471 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--R----VPGPISELQLSRDGVRAAMII-GGKVY 471 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--c----cCCCcCeEEECCCCCEEEEEE-CCEEE
Confidence 5667888888777666432 233333333332222 1 245799999999999988765 47777
Q ss_pred E---EecCCCce-e---eee-eccCCCCceEEeCCCCcEEEEecCc-eEEecc
Q 036585 244 A---WSVRSGKE-V---ASW-MSFDTEPPVIKWAPGSLMFVTGSSE-LSFWIP 287 (304)
Q Consensus 244 v---~d~~~~~~-~---~~~-~~~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~ 287 (304)
+ -....++. + ..+ ..-...+.++.|.+++.+++..... ..+|.+
T Consensus 472 Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v 524 (591)
T PRK13616 472 LAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYV 524 (591)
T ss_pred EEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEE
Confidence 7 44344441 1 112 2233346889999999866443322 445544
No 368
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.99 E-value=0.01 Score=52.65 Aligned_cols=263 Identities=10% Similarity=0.101 Sum_probs=137.0
Q ss_pred ecccCcEEEEeeCCCeEEEEecCCcceeeeecc--cccceeEEEEccC--CC----eEEEEecCCCCCceEEE-EccCce
Q 036585 23 SMEVGIYLVTASDDESIRLYDVTAATCLKTINS--KKYGVDLVCFTSH--PT----TVIYSSKNGWDESLRLL-SLHDNK 93 (304)
Q Consensus 23 ~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~--~~~~v~~~~~~~~--~~----~l~~~~~~~~d~~i~vw-d~~~~~ 93 (304)
+..+...++.++.++.+...++..+. ++.... -...|.|+.++|- ++ .+++|.- +..+.+. -..+..
T Consensus 495 ~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~W---s~~~~~l~~~pd~~ 570 (1096)
T KOG1897|consen 495 VSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLW---SDISMILTFLPDLI 570 (1096)
T ss_pred EeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEee---cceEEEEEECCCcc
Confidence 33344455555555555555555443 222221 2357999999974 22 4566654 4444333 333333
Q ss_pred eeeec--c--cccccEEEEEEcCCCCEEEEcccCCeEEEEeCC--cceeec--------------eE---------EEec
Q 036585 94 YSRYF--K--GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQR--AEKCQG--------------LL---------RVQG 144 (304)
Q Consensus 94 ~~~~~--~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~--------------~~---------~~~~ 144 (304)
.+... . .-...|.-..+-.+..+|+++..||.+..|-+. ++.... .+ ....
T Consensus 571 ~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sd 650 (1096)
T KOG1897|consen 571 LITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSD 650 (1096)
T ss_pred eeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCC
Confidence 22221 1 112345555565668899999999988766543 322111 11 1112
Q ss_pred cceeEecCCCeEE-------------------------EecCCCeEEEEecC----------CCCCceEEEEecCCcEEE
Q 036585 145 RPAAAYDDQGLVF-------------------------GYEKGPLDIFSVGG----------DISDANVVKFSNDGRLML 189 (304)
Q Consensus 145 ~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~ 189 (304)
.+.+.+..++.++ ....+.+.+..+.. -......+++.+....+.
T Consensus 651 rP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~ 730 (1096)
T KOG1897|consen 651 RPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFG 730 (1096)
T ss_pred CCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecCCCChhheEecccceEEE
Confidence 2222232222222 22233333333321 123345567766444444
Q ss_pred EeeCC--------------CeEEEEEcCCCceeEEEEeCC-CCCCcceEEEEcCC-CcEEEEec----------CCCcEE
Q 036585 190 LTTME--------------GHIHVLDSFRGTLLSTYNVKP-VSRNSTLEASFSPE-GMFVISGS----------GDGSVH 243 (304)
Q Consensus 190 ~~~~d--------------g~i~~~d~~~~~~~~~~~~~~-~~~~~i~~~~~s~~-~~~l~~~~----------~dg~i~ 243 (304)
+.+.. ..++++|-++-+.+...+... .....+.++.|..| +.++++|. ..|.|.
T Consensus 731 v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIi 810 (1096)
T KOG1897|consen 731 VLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRII 810 (1096)
T ss_pred EEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEE
Confidence 44321 136777777766665554321 11224555668887 67777775 247899
Q ss_pred EEecCCCceeeeeecc--CCCCceEEeCCCCcEEEEecCceEEeccCCc
Q 036585 244 AWSVRSGKEVASWMSF--DTEPPVIKWAPGSLMFVTGSSELSFWIPDLS 290 (304)
Q Consensus 244 v~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~s~~~d~~iw~~~~~ 290 (304)
+|.....+.++....+ .+.+.++.- -+|+++|.-+..+++|.|..+
T Consensus 811 vfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~In~~vrLye~t~~ 858 (1096)
T KOG1897|consen 811 VFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAGINQSVRLYEWTTE 858 (1096)
T ss_pred EEEEecCCceeeeeeeeeccceeehhh-hCCeEEEecCcEEEEEEcccc
Confidence 9988774444444222 344444432 278888888888999999877
No 369
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.98 E-value=0.0082 Score=51.44 Aligned_cols=62 Identities=16% Similarity=0.223 Sum_probs=43.4
Q ss_pred CCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeecc
Q 036585 194 EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSF 259 (304)
Q Consensus 194 dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~ 259 (304)
-|.|.-+|+.+++...+....... .... +.-.+..++.++.+|.++.+|.++|+.+.+.+..
T Consensus 440 ~g~l~AiD~~tGk~~W~~~~~~p~---~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 440 MGSLIAWDPITGKIVWEHKEDFPL---WGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred ceeEEEEeCCCCceeeEecCCCCC---CCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 367888999999888877632111 1111 1224557778888999999999999998877543
No 370
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.95 E-value=0.0016 Score=42.06 Aligned_cols=65 Identities=18% Similarity=0.266 Sum_probs=48.0
Q ss_pred eeEEEEcc---CC-CeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeC
Q 036585 60 VDLVCFTS---HP-TTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQ 131 (304)
Q Consensus 60 v~~~~~~~---~~-~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 131 (304)
|++|++.. +| +.|++|+. |..|++|+-. +.+..+. -++.|+++.-... ..|+.+..+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~---D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSD---DFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecC---CcEEEEEeCC--cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence 55666554 32 57888888 9999999754 4555665 4567788877765 57999999999999974
No 371
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.95 E-value=0.0016 Score=42.06 Aligned_cols=100 Identities=18% Similarity=0.224 Sum_probs=64.9
Q ss_pred EEEEEEcC---CC-CEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEE
Q 036585 105 VVLLSLCS---SK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVK 180 (304)
Q Consensus 105 v~~~~~~~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 180 (304)
|.++++.. +| +.|++|+.|..|++|+-+ ..+..+. ....++.+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~------------------------------e~~~v~~L~ 49 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT------------------------------ETDKVTSLC 49 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe------------------------------cccceEEEE
Confidence 55666654 32 589999999999999744 3333332 224566676
Q ss_pred EecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcC-CC---cEEEEecCCCcEE
Q 036585 181 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-EG---MFVISGSGDGSVH 243 (304)
Q Consensus 181 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~---~~l~~~~~dg~i~ 243 (304)
-... ..|+.+..+|+|-+|+- .+.+.+.+ .+..++++++.. ++ .-|++|=.+|.|-
T Consensus 50 ~~~~-~~F~Y~l~NGTVGvY~~--~~RlWRiK----SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 50 SLGG-GRFAYALANGTVGVYDR--SQRLWRIK----SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EcCC-CEEEEEecCCEEEEEeC--cceeeeec----cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 6655 45899999999999984 33344444 334466665544 32 3588887888764
No 372
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=3.2e-05 Score=67.92 Aligned_cols=106 Identities=18% Similarity=0.307 Sum_probs=81.9
Q ss_pred CCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCC
Q 036585 184 DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEP 263 (304)
Q Consensus 184 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i 263 (304)
.+..++.|+..|.+...|+... . ..+.......++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..|..+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n-L-~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN-L-GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPV 175 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc-c-chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCcc
Confidence 4567889999999999997653 1 1122222357899999999999999999999999999999999999998887777
Q ss_pred ceEE---eCCCCcEEEEecCceEEeccCCcc
Q 036585 264 PVIK---WAPGSLMFVTGSSELSFWIPDLSK 291 (304)
Q Consensus 264 ~~~~---~~~~~~~l~s~~~d~~iw~~~~~~ 291 (304)
+++- +..++..+.++...+.+|....++
T Consensus 176 t~vi~v~~t~~nS~llt~D~~Gsf~~lv~nk 206 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNSKLLTSDTGGSFWKLVFNK 206 (1206)
T ss_pred ceEEEEEEeCCCcEEEEccCCCceEEEEech
Confidence 6654 445666777777668899776554
No 373
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.00035 Score=61.73 Aligned_cols=102 Identities=16% Similarity=0.217 Sum_probs=76.0
Q ss_pred cCcEEEEeeCCCeEEEEecCCc-ceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccccccc
Q 036585 26 VGIYLVTASDDESIRLYDVTAA-TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDR 104 (304)
Q Consensus 26 ~~~~l~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 104 (304)
.+-.++.|+..|.+...|.... .+...=..-.++|.+++|+.+|..++.|-. +|.|.+||+..++..+.+..|..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~---~G~V~v~D~~~~k~l~~i~e~~ap 174 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLG---DGHVTVWDMHRAKILKVITEHGAP 174 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccC---CCcEEEEEccCCcceeeeeecCCc
Confidence 3567888888888888886642 111222223579999999999999999998 999999999999998888877776
Q ss_pred EEEEEEc---CCCCEEEEcccCCeEEEEeCC
Q 036585 105 VVLLSLC---SSKDCFISGSLDRTVLLWDQR 132 (304)
Q Consensus 105 v~~~~~~---~~~~~l~~~~~dg~i~iwd~~ 132 (304)
.+++-++ .++..++++...|. +|.+.
T Consensus 175 ~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 175 VTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred cceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 6555443 45667888887776 56543
No 374
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.92 E-value=0.00055 Score=55.89 Aligned_cols=144 Identities=16% Similarity=0.208 Sum_probs=85.7
Q ss_pred cEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeec-eE-EEecc----ceeEecCCCeEEEe--------cCCCeEEEEe
Q 036585 104 RVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG-LL-RVQGR----PAAAYDDQGLVFGY--------EKGPLDIFSV 169 (304)
Q Consensus 104 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~-~~~~~----~~~~~~~~~~~~~~--------~~~~~~~~~~ 169 (304)
.|+.+.|.++...|+++...|.|.+|.....+... .. ..... ..-.-+..+.+... ..+-....-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47899999998899999999999999876554332 00 00000 00000112222211 1133344445
Q ss_pred cCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCC-----CCCCcceEEEEcC-----CC---cEEEEe
Q 036585 170 GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP-----VSRNSTLEASFSP-----EG---MFVISG 236 (304)
Q Consensus 170 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-----~~~~~i~~~~~s~-----~~---~~l~~~ 236 (304)
+...++|++++.|.-| ++++|..+|.+.|.|+|....+..-.... .....++++.|+. |+ -.|++|
T Consensus 83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 5568999999998555 89999999999999999888877754322 1334677888873 33 478899
Q ss_pred cCCCcEEEEecC
Q 036585 237 SGDGSVHAWSVR 248 (304)
Q Consensus 237 ~~dg~i~v~d~~ 248 (304)
...|.+.+|.+-
T Consensus 162 Tn~G~v~~fkIl 173 (395)
T PF08596_consen 162 TNSGNVLTFKIL 173 (395)
T ss_dssp ETTSEEEEEEEE
T ss_pred eCCCCEEEEEEe
Confidence 999999999874
No 375
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.82 E-value=0.0075 Score=45.79 Aligned_cols=194 Identities=14% Similarity=0.071 Sum_probs=120.0
Q ss_pred eeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccccc-ccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeec
Q 036585 60 VDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHH-DRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG 138 (304)
Q Consensus 60 v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 138 (304)
-..+.|..++..+-+.+.-| ...|+.+|+.+++......-.. ---..+.... ++...-.-.++...+||..+.+...
T Consensus 47 TQGL~~~~~g~LyESTG~yG-~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYG-QSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEETTEEEEEECSTT-EEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEEEE
T ss_pred CccEEecCCCEEEEeCCCCC-cEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceEEE
Confidence 45677767777777766533 6689999999998665443221 1223344443 3344445578999999999888777
Q ss_pred eEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCC--
Q 036585 139 LLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV-- 216 (304)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-- 216 (304)
.+...+ .=..++ .+++.|+.+.....++++|..+.+...++.....
T Consensus 125 ~~~y~~------------------------------EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~ 172 (264)
T PF05096_consen 125 TFPYPG------------------------------EGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGR 172 (264)
T ss_dssp EEE-SS------------------------------S--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTE
T ss_pred EEecCC------------------------------cceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCE
Confidence 665331 223344 5777888888888999999988888777764311
Q ss_pred CCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeec------------c---CCCCceEEeCCCCcEEEEecCc
Q 036585 217 SRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMS------------F---DTEPPVIKWAPGSLMFVTGSSE 281 (304)
Q Consensus 217 ~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~------------~---~~~i~~~~~~~~~~~l~s~~~d 281 (304)
.-..++.+.|- +|...|=.=....|...|..+|+....+.. + ..-.+.|+|.|....|...+..
T Consensus 173 pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 173 PVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp E---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred ECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 12245556664 665555454556788889999987665510 1 2347899999988777777776
Q ss_pred -eEEeccC
Q 036585 282 -LSFWIPD 288 (304)
Q Consensus 282 -~~iw~~~ 288 (304)
=++|.+.
T Consensus 252 Wp~lyeV~ 259 (264)
T PF05096_consen 252 WPKLYEVK 259 (264)
T ss_dssp -SEEEEEE
T ss_pred CCceEEEE
Confidence 5555544
No 376
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.81 E-value=6.8e-05 Score=38.33 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=33.5
Q ss_pred cceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEE
Q 036585 47 ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 88 (304)
Q Consensus 47 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd 88 (304)
+++...+..|...+.++.|.+++..+++++. |+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASD---DGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecC---CCeEEEcC
Confidence 3456667788889999999999999999988 99999996
No 377
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.81 E-value=0.0083 Score=45.80 Aligned_cols=201 Identities=8% Similarity=0.067 Sum_probs=122.4
Q ss_pred ecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccc-cccEEEEEEcCCCCEEEEcccCCeEEEEeC
Q 036585 53 INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGH-HDRVVLLSLCSSKDCFISGSLDRTVLLWDQ 131 (304)
Q Consensus 53 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 131 (304)
+.+-...+.++.|+|+.+.|++... ...-.|+=-..|+.++++.-. -.....+.+..++++.++--.++.+.++.+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n---~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~v 157 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTN---KPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTV 157 (316)
T ss_pred cccccccccceeeCCCcceEEEecC---CCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEE
Confidence 3444556999999999999999986 555555555667777765421 223466788888888888888899888877
Q ss_pred CcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEE
Q 036585 132 RAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY 211 (304)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 211 (304)
............. +.+-.....+.....++|+|....|.++-...-+.+|....+......
T Consensus 158 d~~t~~~~~~~~~-------------------i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~ 218 (316)
T COG3204 158 DADTTVISAKVQK-------------------IPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSV 218 (316)
T ss_pred cCCccEEeccceE-------------------EeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccccc
Confidence 7654433322110 001111122456778999999988888888777777776543311111
Q ss_pred EeCCC-------CCCcceEEEEcC-CCcEEEEecCCCcEEEEecCCCceeeeeeccC---------CCCceEEeCCCCcE
Q 036585 212 NVKPV-------SRNSTLEASFSP-EGMFVISGSGDGSVHAWSVRSGKEVASWMSFD---------TEPPVIKWAPGSLM 274 (304)
Q Consensus 212 ~~~~~-------~~~~i~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~ 274 (304)
..... .-..+.++.|++ .+..|+-+.+++.+.-.|. .++.+..+.-+. ...-.++..++|..
T Consensus 219 ~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~-~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~l 297 (316)
T COG3204 219 HASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDL-SGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNL 297 (316)
T ss_pred ccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEec-CCCeeeeEEeccCCCCCcccCCCcceeEECCCCCE
Confidence 10000 123466788887 4556666777777777775 455444442221 12345666666654
Q ss_pred EE
Q 036585 275 FV 276 (304)
Q Consensus 275 l~ 276 (304)
-+
T Consensus 298 YI 299 (316)
T COG3204 298 YI 299 (316)
T ss_pred EE
Confidence 33
No 378
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.80 E-value=0.0082 Score=45.58 Aligned_cols=184 Identities=13% Similarity=0.120 Sum_probs=111.6
Q ss_pred EeecccCcEEEEeeCCC--eEEEEecCCcceeeeecccc-cceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee
Q 036585 21 LQSMEVGIYLVTASDDE--SIRLYDVTAATCLKTINSKK-YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY 97 (304)
Q Consensus 21 i~~~~~~~~l~~~~~d~--~i~vw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~ 97 (304)
+.+..+|.++-+.+.-| .|+.+|+.+++......-.. .--..++.. +..|.--+-. ++...+||..+-+.+.+
T Consensus 50 L~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk--~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 50 LEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWK--EGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESS--SSEEEEEETTTTEEEEE
T ss_pred EEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEec--CCeEEEEccccceEEEE
Confidence 34456677888887766 69999999998776554322 111223333 3333333332 89999999999888887
Q ss_pred cccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCce
Q 036585 98 FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDAN 177 (304)
Q Consensus 98 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 177 (304)
+. ..+.=+.++ .+++.|+.+.....++++|..+.+....+...... .....++
T Consensus 126 ~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g------------------------~pv~~LN 178 (264)
T PF05096_consen 126 FP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNG------------------------RPVSNLN 178 (264)
T ss_dssp EE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETT------------------------EE---EE
T ss_pred Ee-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECC------------------------EECCCcE
Confidence 76 344556666 45666777766788999999887776665533111 1123566
Q ss_pred EEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeC---------C---CCCCcceEEEEcCCCcE-EEEe
Q 036585 178 VVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK---------P---VSRNSTLEASFSPEGMF-VISG 236 (304)
Q Consensus 178 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~---------~---~~~~~i~~~~~s~~~~~-l~~~ 236 (304)
.+.|- +|...|=.=....|...|..+|+....+... . ....-.+.+|++|..+. ++||
T Consensus 179 ELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 179 ELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 67775 5665555555678889999999988877521 0 11356789999986655 4455
No 379
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.79 E-value=0.0048 Score=51.10 Aligned_cols=51 Identities=20% Similarity=0.173 Sum_probs=36.9
Q ss_pred ceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcce
Q 036585 83 SLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEK 135 (304)
Q Consensus 83 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 135 (304)
.|++|+.. |+.+..+.-..+.+.++.|..+. .|++...||.+++||+....
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~ 112 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF 112 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce
Confidence 58888865 44555544333899999998855 56667789999999986433
No 380
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.79 E-value=0.01 Score=46.43 Aligned_cols=158 Identities=15% Similarity=0.176 Sum_probs=90.3
Q ss_pred cCCCeEEEEecCCCCCceEEEEccC-ceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecc
Q 036585 67 SHPTTVIYSSKNGWDESLRLLSLHD-NKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR 145 (304)
Q Consensus 67 ~~~~~l~~~~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 145 (304)
..++.|+.|+. +| +.+++... .+..... +...|..+...|+-+.+++-+ |+.++++++..-...........
T Consensus 5 ~~~~~L~vGt~---~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 5 SWGDRLLVGTE---DG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred cCCCEEEEEEC---CC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccc
Confidence 46788999986 77 99999833 3333332 233499999999877766655 49999999876554432110000
Q ss_pred ceeEecCCCeEEEecCCCeEEEEecCCCCCceEEE--EecCCcEEEEeeCCCeEEEEEcCCC-----ceeEEEEeCCCCC
Q 036585 146 PAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVK--FSNDGRLMLLTTMEGHIHVLDSFRG-----TLLSTYNVKPVSR 218 (304)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~~~dg~i~~~d~~~~-----~~~~~~~~~~~~~ 218 (304)
.... . ....-.....+..++ -...+...++.....+|.+|..... +..+++. ..
T Consensus 78 ~~~~---~------------~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~----lp 138 (275)
T PF00780_consen 78 PKSR---S------------LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS----LP 138 (275)
T ss_pred cccc---c------------ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE----cC
Confidence 0000 0 000000112233333 1123333344444458888887653 3455555 45
Q ss_pred CcceEEEEcCCCcEEEEecCCCcEEEEecCCCcee
Q 036585 219 NSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEV 253 (304)
Q Consensus 219 ~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~ 253 (304)
..+..++|. ++.++.|..++ ..+.|+.++...
T Consensus 139 ~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~ 170 (275)
T PF00780_consen 139 DPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPS 170 (275)
T ss_pred CCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCce
Confidence 788889998 55677776554 888899876653
No 381
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.78 E-value=0.0065 Score=48.73 Aligned_cols=220 Identities=14% Similarity=0.122 Sum_probs=95.1
Q ss_pred ecCCcceeeeeccccc-----ceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEE
Q 036585 43 DVTAATCLKTINSKKY-----GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCF 117 (304)
Q Consensus 43 ~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 117 (304)
|..||..+..|..+.. -.+.=+|.++|+.|+.++.......+.+.|+.+++..+.-.+.........++|+.+.+
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~ 95 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL 95 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence 5667777776654332 23344778899888887764335677788999888665444322323356677888877
Q ss_pred EEcccCCeEEEEeCCcceeeceEEEecccee--E--ecCCCe-EEEecCCCeEEEEecCCCCCceEEE-EecCCcEEEEe
Q 036585 118 ISGSLDRTVLLWDQRAEKCQGLLRVQGRPAA--A--YDDQGL-VFGYEKGPLDIFSVGGDISDANVVK-FSNDGRLMLLT 191 (304)
Q Consensus 118 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~--~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~ 191 (304)
+.......++-.|+++.+....+..+..... . .+.++. +++.. ..+. ....+. +.-- +.+.-+
T Consensus 96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e-------~~~~---d~~~l~~~~~f-~e~~~a 164 (386)
T PF14583_consen 96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIE-------ISRE---DWKPLTKWKGF-REFYEA 164 (386)
T ss_dssp EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEE-------EEGG---G-----SHHHH-HHHHHC
T ss_pred EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEE-------Eeeh---hccCccccHHH-HHHHhh
Confidence 6655567889999999877666554433211 1 111111 11100 0000 000000 0000 001112
Q ss_pred eCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcE-EEEec---CCC-cEEEEecCC-CceeeeeeccCC--CC
Q 036585 192 TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF-VISGS---GDG-SVHAWSVRS-GKEVASWMSFDT--EP 263 (304)
Q Consensus 192 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~---~dg-~i~v~d~~~-~~~~~~~~~~~~--~i 263 (304)
--...|...|+.+|+....+. ....+.-+.|||.... |+-|- .+. .-|||-+++ +.....+..+.. .+
T Consensus 165 ~p~~~i~~idl~tG~~~~v~~----~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~ 240 (386)
T PF14583_consen 165 RPHCRIFTIDLKTGERKVVFE----DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESV 240 (386)
T ss_dssp ---EEEEEEETTT--EEEEEE----ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEE
T ss_pred CCCceEEEEECCCCceeEEEe----cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccc
Confidence 223467788999998777776 5567778999995544 44442 222 125665543 333333332321 12
Q ss_pred ceEEeCCCCcEEEE
Q 036585 264 PVIKWAPGSLMFVT 277 (304)
Q Consensus 264 ~~~~~~~~~~~l~s 277 (304)
..=-|.|||..+.-
T Consensus 241 gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 241 GHEFWVPDGSTIWY 254 (386)
T ss_dssp EEEEE-TTSS-EEE
T ss_pred ccccccCCCCEEEE
Confidence 22237888876543
No 382
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.75 E-value=0.015 Score=47.25 Aligned_cols=227 Identities=12% Similarity=0.109 Sum_probs=106.0
Q ss_pred CcEEEEee-CCCeEEEEecCC----cceeeeecc---cc----cceeEEEEccCCCeEEEEecC---CCCCceEEEEccC
Q 036585 27 GIYLVTAS-DDESIRLYDVTA----ATCLKTINS---KK----YGVDLVCFTSHPTTVIYSSKN---GWDESLRLLSLHD 91 (304)
Q Consensus 27 ~~~l~~~~-~d~~i~vw~~~~----~~~~~~~~~---~~----~~v~~~~~~~~~~~l~~~~~~---~~d~~i~vwd~~~ 91 (304)
.++|+..+ ..+.|.|.|+.+ .++.+.+.. +. .....+-.-|+|..++++-.+ +..|.+.++|-++
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 56777666 677899999874 344444442 11 233445556788888876431 1246678888877
Q ss_pred ceeeeecccc---cccEEEEEEcCCCCEEEEccc--------------------CCeEEEEeCCcceeeceEEEecccee
Q 036585 92 NKYSRYFKGH---HDRVVLLSLCSSKDCFISGSL--------------------DRTVLLWDQRAEKCQGLLRVQGRPAA 148 (304)
Q Consensus 92 ~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~--------------------dg~i~iwd~~~~~~~~~~~~~~~~~~ 148 (304)
.+........ ...-+.+-|.|..+.++|... ..++.+||+.+.+.++.+.......
T Consensus 167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~- 245 (461)
T PF05694_consen 167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ- 245 (461)
T ss_dssp --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE-
T ss_pred ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC-
Confidence 6665555432 223466777888888887642 4579999999999988887543211
Q ss_pred EecCCCeEEEecCCCeEEEEecCCCCCceEEEEe--cCCcE-EEEeeCCCeEEEEEc-CCCceeE--EEEeCCC------
Q 036585 149 AYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFS--NDGRL-MLLTTMEGHIHVLDS-FRGTLLS--TYNVKPV------ 216 (304)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~-l~~~~~dg~i~~~d~-~~~~~~~--~~~~~~~------ 216 (304)
....+.|. |+..+ ++.+...++|..|-- ..++... .+.....
T Consensus 246 --------------------------~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~ 299 (461)
T PF05694_consen 246 --------------------------MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI 299 (461)
T ss_dssp --------------------------EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred --------------------------ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence 12334553 33333 333334455555543 4443221 1221100
Q ss_pred ---C-------CCcceEEEEcCCCcEEEEec-CCCcEEEEecCCCc---eeeeee-c---------------cCCCCceE
Q 036585 217 ---S-------RNSTLEASFSPEGMFVISGS-GDGSVHAWSVRSGK---EVASWM-S---------------FDTEPPVI 266 (304)
Q Consensus 217 ---~-------~~~i~~~~~s~~~~~l~~~~-~dg~i~v~d~~~~~---~~~~~~-~---------------~~~~i~~~ 266 (304)
. ..-++.+.+|.|.++|+..+ ..|.|+.||+.+.. ++.++. + -.+...-+
T Consensus 300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMv 379 (461)
T PF05694_consen 300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMV 379 (461)
T ss_dssp --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----E
T ss_pred ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeE
Confidence 0 24578999999999998776 58999999997643 232221 0 11233567
Q ss_pred EeCCCCcEEEEecC
Q 036585 267 KWAPGSLMFVTGSS 280 (304)
Q Consensus 267 ~~~~~~~~l~s~~~ 280 (304)
..|-||+.|+...+
T Consensus 380 qlS~DGkRlYvTnS 393 (461)
T PF05694_consen 380 QLSLDGKRLYVTNS 393 (461)
T ss_dssp EE-TTSSEEEEE--
T ss_pred EEccCCeEEEEEee
Confidence 78888887776543
No 383
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.73 E-value=0.013 Score=50.74 Aligned_cols=228 Identities=14% Similarity=0.172 Sum_probs=117.4
Q ss_pred ccCcEEEEeeCCC------eEEEEecCCcceee--eecccccceeEEEEccCCCeEEEEecC-C--CCCceEEEEccCce
Q 036585 25 EVGIYLVTASDDE------SIRLYDVTAATCLK--TINSKKYGVDLVCFTSHPTTVIYSSKN-G--WDESLRLLSLHDNK 93 (304)
Q Consensus 25 ~~~~~l~~~~~d~------~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~~-~--~d~~i~vwd~~~~~ 93 (304)
..+.+++.|+.++ .+..+|..+++-.. .+.... .-.+++.. ++...++|+.+ + .-.++..||..+++
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r-~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPR-CRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCccc-ccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 3466778888773 57788887764332 222222 22233333 55677777762 1 11567788888776
Q ss_pred eeee--cccccccEEEEEEcCCCCEEEEcccCCe-----EEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEE
Q 036585 94 YSRY--FKGHHDRVVLLSLCSSKDCFISGSLDRT-----VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDI 166 (304)
Q Consensus 94 ~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (304)
-... +........... -+|...++|+.||. +-.||.++.+....-...
T Consensus 361 W~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~----------------------- 415 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML----------------------- 415 (571)
T ss_pred eeccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCCCC-----------------------
Confidence 4331 211111111111 26778888888864 556666554432211100
Q ss_pred EEecCCCCCceE-EEEecCCcEEEEeeCCC------eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC
Q 036585 167 FSVGGDISDANV-VKFSNDGRLMLLTTMEG------HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD 239 (304)
Q Consensus 167 ~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg------~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 239 (304)
..... -...-+|+..++|+.++ .+..||..+++....-... ....... ++ .-++...+.|+.|
T Consensus 416 -------~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~-~~R~~~g-~a-~~~~~iYvvGG~~ 485 (571)
T KOG4441|consen 416 -------TRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN-TRRSGFG-VA-VLNGKIYVVGGFD 485 (571)
T ss_pred -------cceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcc-cccccce-EE-EECCEEEEECCcc
Confidence 01111 11223677777777554 5788998776654332211 1111122 22 2367788888877
Q ss_pred Cc-----EEEEecCCCce--eeeeeccCCCCceEEeCCCCcEEEEecCc-------eEEeccCCcc
Q 036585 240 GS-----VHAWSVRSGKE--VASWMSFDTEPPVIKWAPGSLMFVTGSSE-------LSFWIPDLSK 291 (304)
Q Consensus 240 g~-----i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-------~~iw~~~~~~ 291 (304)
+. |..||..+.+- +..+......+....+ ++...+.|+.| +..|+...++
T Consensus 486 ~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 486 GTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred CCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc
Confidence 63 77788876543 2222222222222222 56677777766 6667666554
No 384
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.0015 Score=53.61 Aligned_cols=150 Identities=14% Similarity=0.232 Sum_probs=96.4
Q ss_pred cCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCC--E-----EEEcccCCeEEEEeCCcceeece
Q 036585 67 SHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKD--C-----FISGSLDRTVLLWDQRAEKCQGL 139 (304)
Q Consensus 67 ~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~-----l~~~~~dg~i~iwd~~~~~~~~~ 139 (304)
.+.+.|+..... ...++-.|++.|+.+...+-+.+ |.-+.+.|+.+ . -+.|-.|..|.-||+|-.... .
T Consensus 343 ~dsnlil~~~~~--~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-k 418 (644)
T KOG2395|consen 343 ADSNLILMDGGE--QDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-K 418 (644)
T ss_pred cccceEeeCCCC--cCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-e
Confidence 344444444432 67888889999999999886666 77777887653 2 234556778888998732221 1
Q ss_pred EEE-eccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCC
Q 036585 140 LRV-QGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 218 (304)
Q Consensus 140 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~ 218 (304)
+.. +.... .......|++-..+| ++++|+.+|.|++||- .+...++.- ++..
T Consensus 419 l~~~q~kqy-----------------------~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAl--PgLG 471 (644)
T KOG2395|consen 419 LAVVQSKQY-----------------------STKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTAL--PGLG 471 (644)
T ss_pred eeeeecccc-----------------------ccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcc--cccC
Confidence 110 00000 011234455555555 6999999999999995 554444332 2678
Q ss_pred CcceEEEEcCCCcEEEEecCCCcEEEEecC
Q 036585 219 NSTLEASFSPEGMFVISGSGDGSVHAWSVR 248 (304)
Q Consensus 219 ~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~ 248 (304)
.+|..+..+.+|++|++.+ +..+.+.++.
T Consensus 472 ~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 472 DAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred CceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 8999999999999988775 5567776653
No 385
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.68 E-value=0.00012 Score=53.12 Aligned_cols=136 Identities=16% Similarity=0.154 Sum_probs=76.0
Q ss_pred CCceEEEEccCcee-eeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEe
Q 036585 81 DESLRLLSLHDNKY-SRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGY 159 (304)
Q Consensus 81 d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (304)
|+.|+-+++..-+. .+....|... .....-+..+++|+.+|.|.+|+.............
T Consensus 39 ~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s---------------- 99 (238)
T KOG2444|consen 39 DGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS---------------- 99 (238)
T ss_pred Ccccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhc----------------
Confidence 88888777764332 1111112222 111123457899999999999987622111111000
Q ss_pred cCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCC-CcceEEEEcCCCcEEEEe--
Q 036585 160 EKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR-NSTLEASFSPEGMFVISG-- 236 (304)
Q Consensus 160 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~-- 236 (304)
.......-+.--.++.+..+++.+|.|+.|+..-.+.+.... .|. .+...+..+..++.++.+
T Consensus 100 -----------~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g---~h~~~~~e~~ivv~sd~~i~~a~~ 165 (238)
T KOG2444|consen 100 -----------GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG---QHNFESGEELIVVGSDEFLKIADT 165 (238)
T ss_pred -----------ccccceeccccccccceeEEeccCCceeeeccccCceeeeec---cccCCCcceeEEecCCceEEeecc
Confidence 000111122223355688899999999999998777766655 344 444445555555566666
Q ss_pred cCCCcEEEEecCC
Q 036585 237 SGDGSVHAWSVRS 249 (304)
Q Consensus 237 ~~dg~i~v~d~~~ 249 (304)
+.|..++.|++..
T Consensus 166 S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 166 SHDRVLKKWNVEK 178 (238)
T ss_pred ccchhhhhcchhh
Confidence 6666667776643
No 386
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.66 E-value=0.015 Score=44.72 Aligned_cols=146 Identities=18% Similarity=0.122 Sum_probs=88.5
Q ss_pred cEEEEEEcCCCCEEEEcc---cCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEE
Q 036585 104 RVVLLSLCSSKDCFISGS---LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVK 180 (304)
Q Consensus 104 ~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 180 (304)
.+.+.+++++++.++... ....++++.... ...... ....+....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~~------------------------------~g~~l~~PS 72 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--PVRPVL------------------------------TGGSLTRPS 72 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--cceeec------------------------------cCCcccccc
Confidence 688999999998777655 333455554332 221111 112566778
Q ss_pred EecCCcEEEEeeCCCeEEEEE-cCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEec---CCCcEEEEecC---CCc--
Q 036585 181 FSNDGRLMLLTTMEGHIHVLD-SFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS---GDGSVHAWSVR---SGK-- 251 (304)
Q Consensus 181 ~~~~~~~l~~~~~dg~i~~~d-~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~v~d~~---~~~-- 251 (304)
|++++...++...+...+++. ..+++..............|..+.+||||..+|... .++.|.+--+. .+.
T Consensus 73 ~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~ 152 (253)
T PF10647_consen 73 WDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPR 152 (253)
T ss_pred ccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcc
Confidence 999987777766666666663 333333222211111222899999999999887664 35677776543 231
Q ss_pred ----eeeeeeccCCCCceEEeCCCCcEEEEecCc
Q 036585 252 ----EVASWMSFDTEPPVIKWAPGSLMFVTGSSE 281 (304)
Q Consensus 252 ----~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 281 (304)
++.........++.+.|.+++.+++.+...
T Consensus 153 ~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~ 186 (253)
T PF10647_consen 153 RLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSA 186 (253)
T ss_pred eeccceEecccccCcceeeeecCCCEEEEEeCCC
Confidence 112222335678999999999888777655
No 387
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.0017 Score=53.30 Aligned_cols=139 Identities=12% Similarity=0.163 Sum_probs=88.7
Q ss_pred EEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCc-------EEE
Q 036585 117 FISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGR-------LML 189 (304)
Q Consensus 117 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~ 189 (304)
|.++.....++-.|++.++.+........ |+-+.+.|+.+ .-+
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d------------------------------i~mv~~t~d~K~~Ql~~e~Tl 398 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD------------------------------INMVDITPDFKFAQLTSEQTL 398 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC------------------------------cceeeccCCcchhcccccccE
Confidence 33444556677778888887766654322 44445555432 123
Q ss_pred EeeCCCeEEEEEcCCCce--eEEEEeCC-CCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCce-eeeeeccCCCCce
Q 036585 190 LTTMEGHIHVLDSFRGTL--LSTYNVKP-VSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKE-VASWMSFDTEPPV 265 (304)
Q Consensus 190 ~~~~dg~i~~~d~~~~~~--~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~i~~ 265 (304)
+|-.+..|.-||.+-... +...+.+. .......|.+-..+| ++++|+.+|.|++||- .+.. ...+++...+|..
T Consensus 399 vGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~h 476 (644)
T KOG2395|consen 399 VGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKH 476 (644)
T ss_pred EeecCCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceee
Confidence 466677889999873222 11111110 123344555554455 8999999999999996 4444 4456888999999
Q ss_pred EEeCCCCcEEEEecCc-eEEecc
Q 036585 266 IKWAPGSLMFVTGSSE-LSFWIP 287 (304)
Q Consensus 266 ~~~~~~~~~l~s~~~d-~~iw~~ 287 (304)
+..+.+|++++..+.. +.+-+.
T Consensus 477 VdvtadGKwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 477 VDVTADGKWILATCKTYLLLIDT 499 (644)
T ss_pred EEeeccCcEEEEecccEEEEEEE
Confidence 9999999999888877 555444
No 388
>PHA02713 hypothetical protein; Provisional
Probab=97.66 E-value=0.0047 Score=53.35 Aligned_cols=65 Identities=3% Similarity=-0.005 Sum_probs=38.3
Q ss_pred CCcEEEEeeCC------CeEEEEEcCC-CceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCC--cEEEEecCCCc
Q 036585 184 DGRLMLLTTME------GHIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG--SVHAWSVRSGK 251 (304)
Q Consensus 184 ~~~~l~~~~~d------g~i~~~d~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~v~d~~~~~ 251 (304)
+++..++|+.+ ..+..||..+ .+....-.. +........+.+ +++..++|+.++ .+..||..+.+
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m-~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTT-ESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcccc-CcccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 56766777654 2467899887 454322221 112222222333 778888998888 67778877654
No 389
>PHA02713 hypothetical protein; Provisional
Probab=97.65 E-value=0.014 Score=50.60 Aligned_cols=91 Identities=7% Similarity=-0.060 Sum_probs=45.9
Q ss_pred eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC------CcEEEEecCC-Cc--eeeeeeccCCCCceE
Q 036585 196 HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD------GSVHAWSVRS-GK--EVASWMSFDTEPPVI 266 (304)
Q Consensus 196 ~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------g~i~v~d~~~-~~--~~~~~~~~~~~i~~~ 266 (304)
.+..||..+.+....-... ....... + ..-+++..+.|+.+ ..+..||..+ .+ .+..++........+
T Consensus 433 ~ve~YDP~td~W~~v~~m~-~~r~~~~-~-~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~ 509 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFW-TGTIRPG-V-VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTI 509 (557)
T ss_pred eEEEECCCCCeEeecCCCC-cccccCc-E-EEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeE
Confidence 5788998776554322211 1111111 2 22366777777654 2467899876 32 233333222222223
Q ss_pred EeCCCCcEEEEecCc----eEEeccCCcc
Q 036585 267 KWAPGSLMFVTGSSE----LSFWIPDLSK 291 (304)
Q Consensus 267 ~~~~~~~~l~s~~~d----~~iw~~~~~~ 291 (304)
.+ +++..++|+.+ +..|++..++
T Consensus 510 ~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 510 LH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred EE--CCEEEEEeeecceeehhhcCccccc
Confidence 33 67788888766 4555555443
No 390
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.55 E-value=0.0068 Score=45.99 Aligned_cols=197 Identities=14% Similarity=0.134 Sum_probs=107.9
Q ss_pred eecccCcEEEEeeCC-----CeEEEEecCCc-ceeeeecccccceeEEEEccCCCeEEEEecC---------------CC
Q 036585 22 QSMEVGIYLVTASDD-----ESIRLYDVTAA-TCLKTINSKKYGVDLVCFTSHPTTVIYSSKN---------------GW 80 (304)
Q Consensus 22 ~~~~~~~~l~~~~~d-----~~i~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~---------------~~ 80 (304)
.+++||.+|...-.| |.|-|||...+ +.+-++..|.-....+.+.+||+.++.+..+ ..
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM 199 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM 199 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence 578999999877554 67999998743 4566788888888999999999999887531 01
Q ss_pred CCceEEEEccCceeeee--cc--cccccEEEEEEcCCCCEEEEcccCCe-----EEEEeCCcceeeceEEEeccceeEec
Q 036585 81 DESLRLLSLHDNKYSRY--FK--GHHDRVVLLSLCSSKDCFISGSLDRT-----VLLWDQRAEKCQGLLRVQGRPAAAYD 151 (304)
Q Consensus 81 d~~i~vwd~~~~~~~~~--~~--~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~ 151 (304)
.-++.+.|..+++.+.. +. .+.-.|..++.-+||..++.+-..|. -.+=-...++....+..+.....
T Consensus 200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~--- 276 (366)
T COG3490 200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTA--- 276 (366)
T ss_pred CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHH---
Confidence 12233444444443322 11 23345666666666654444332221 00000011111111111100000
Q ss_pred CCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC-CCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCC
Q 036585 152 DQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG 230 (304)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 230 (304)
.-...|-+++.+.+..+++..+- .+...+||..+|..+..-.... ...++ +..
T Consensus 277 -------------------~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d-----aaGva--~~~ 330 (366)
T COG3490 277 -------------------AFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD-----AAGVA--AAK 330 (366)
T ss_pred -------------------HHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc-----cccce--ecc
Confidence 01134566777766666655554 4467889999998877655321 11122 333
Q ss_pred cEEEEecCCCcEEEEec
Q 036585 231 MFVISGSGDGSVHAWSV 247 (304)
Q Consensus 231 ~~l~~~~~dg~i~v~d~ 247 (304)
.-++..+.+|.+.++.-
T Consensus 331 ~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 331 GGFAVSSGQGRIIFYSR 347 (366)
T ss_pred CceEEecCCceEEeccc
Confidence 44566667888887743
No 391
>PHA03098 kelch-like protein; Provisional
Probab=97.46 E-value=0.02 Score=49.52 Aligned_cols=189 Identities=7% Similarity=0.098 Sum_probs=88.9
Q ss_pred cCcEEEEeeCCC------eEEEEecCCcceeee--ecccccceeEEEEccCCCeEEEEecCC--CCCceEEEEccCceee
Q 036585 26 VGIYLVTASDDE------SIRLYDVTAATCLKT--INSKKYGVDLVCFTSHPTTVIYSSKNG--WDESLRLLSLHDNKYS 95 (304)
Q Consensus 26 ~~~~l~~~~~d~------~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~~~--~d~~i~vwd~~~~~~~ 95 (304)
++..++.|+.++ .+..||..+.+-... +.........+ .-++..++.|+..+ .-..+..||..+++..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 456667776543 467788776543221 11111112222 23666777776521 1235777888766432
Q ss_pred ee--cccccccEEEEEEcCCCCEEEEcccC------CeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEE
Q 036585 96 RY--FKGHHDRVVLLSLCSSKDCFISGSLD------RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIF 167 (304)
Q Consensus 96 ~~--~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (304)
.. +...... .+++ .-+++.++.|+.+ ..+..||+.+.+....-..+.
T Consensus 372 ~~~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~----------------------- 426 (534)
T PHA03098 372 EEPPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPI----------------------- 426 (534)
T ss_pred eCCCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCc-----------------------
Confidence 21 1111111 1112 1256666666632 357778877654332111000
Q ss_pred EecCCCCCceEEEEecCCcEEEEeeCC--------CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC
Q 036585 168 SVGGDISDANVVKFSNDGRLMLLTTME--------GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD 239 (304)
Q Consensus 168 ~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 239 (304)
..... + +...+++.++.|+.+ ..+.+||..+.+....-... ........+.+ +++.++.|+.+
T Consensus 427 ----~r~~~-~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~r~~~~~~~~--~~~iyv~GG~~ 497 (534)
T PHA03098 427 ----SHYGG-C-AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLN-FPRINASLCIF--NNKIYVVGGDK 497 (534)
T ss_pred ----cccCc-e-EEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCC-cccccceEEEE--CCEEEEEcCCc
Confidence 00011 1 122355666666542 23888998876654322111 11111222222 67777777654
Q ss_pred -----CcEEEEecCCC
Q 036585 240 -----GSVHAWSVRSG 250 (304)
Q Consensus 240 -----g~i~v~d~~~~ 250 (304)
+.+.+||..+.
T Consensus 498 ~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 498 YEYYINEIEVYDDKTN 513 (534)
T ss_pred CCcccceeEEEeCCCC
Confidence 46888887654
No 392
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.45 E-value=0.044 Score=44.67 Aligned_cols=202 Identities=10% Similarity=0.091 Sum_probs=94.8
Q ss_pred eeEeecccCcEEEEeeC------CCeEEEEecCCcceeeeecccc---cceeEEEEccCCCeEEEEecC-----------
Q 036585 19 EILQSMEVGIYLVTASD------DESIRLYDVTAATCLKTINSKK---YGVDLVCFTSHPTTVIYSSKN----------- 78 (304)
Q Consensus 19 ~~i~~~~~~~~l~~~~~------d~~i~vw~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~~----------- 78 (304)
..+.+.|+|++++++=. -|-+.+.|-++.+.+....... .--+.+-+.|..+.+++..-.
T Consensus 133 HT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~ 212 (461)
T PF05694_consen 133 HTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNP 212 (461)
T ss_dssp EEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---T
T ss_pred ceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCCh
Confidence 34678899999887632 2458888888777776665432 234567788888888876542
Q ss_pred ------CCCCceEEEEccCceeeeeccccc--ccEEEEEEcC--CCCE-EEEcccCCeEEEEeC-Ccceee--ceEEEec
Q 036585 79 ------GWDESLRLLSLHDNKYSRYFKGHH--DRVVLLSLCS--SKDC-FISGSLDRTVLLWDQ-RAEKCQ--GLLRVQG 144 (304)
Q Consensus 79 ------~~d~~i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~-l~~~~~dg~i~iwd~-~~~~~~--~~~~~~~ 144 (304)
.+..++.+||+.+.+.++++.--. .....+.|.. +..+ ++.+....+|..|-- +.++.. ..+....
T Consensus 213 ~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~ 292 (461)
T PF05694_consen 213 EDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPA 292 (461)
T ss_dssp TTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--
T ss_pred hHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCC
Confidence 146789999999999988876332 2456777764 3444 333333445555433 333221 1121111
Q ss_pred cceeEecCCCeEEEecCCCeEEEEecC-------CCCCceEEEEecCCcEEEEeeC-CCeEEEEEcCCCc---eeEEEEe
Q 036585 145 RPAAAYDDQGLVFGYEKGPLDIFSVGG-------DISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFRGT---LLSTYNV 213 (304)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~---~~~~~~~ 213 (304)
... .-|.+.. -..-++.|.+|.|.++|.+++. .|.|+.||+.... .......
T Consensus 293 ~~v-----------------~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~l 355 (461)
T PF05694_consen 293 KKV-----------------EGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFL 355 (461)
T ss_dssp EE-------------------SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-
T ss_pred ccc-----------------CcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEE
Confidence 100 0000000 1345789999999999988774 8999999997633 2222221
Q ss_pred CC-------------CCCCcceEEEEcCCCcEEEEec
Q 036585 214 KP-------------VSRNSTLEASFSPEGMFVISGS 237 (304)
Q Consensus 214 ~~-------------~~~~~i~~~~~s~~~~~l~~~~ 237 (304)
.. .-.+....+..|.||+.|+..+
T Consensus 356 GG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 356 GGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred CcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 00 0112335678889999888764
No 393
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.44 E-value=0.031 Score=42.79 Aligned_cols=155 Identities=8% Similarity=0.089 Sum_probs=100.7
Q ss_pred ccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceE
Q 036585 99 KGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANV 178 (304)
Q Consensus 99 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 178 (304)
.+-...+.++.|+|+.+.|++......-.++=...+..+..+...+. .....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~----------------------------~DpE~ 133 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF----------------------------SDPET 133 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc----------------------------CChhH
Confidence 34455699999999999888888777777776667777777665432 23455
Q ss_pred EEEecCCcEEEEeeCCCeEEEEEcCCCceeEEE-----E--eCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCc
Q 036585 179 VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY-----N--VKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGK 251 (304)
Q Consensus 179 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-----~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~ 251 (304)
+.+..+|++.++--.++.+.++.+......... . .....+...-.++|+|....|+.+-+..-+.||......
T Consensus 134 Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~ 213 (316)
T COG3204 134 IEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSP 213 (316)
T ss_pred eEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCC
Confidence 778888888777777888888877654322211 1 111224567789999998888888777777777765332
Q ss_pred e---eeeeecc-------CCCCceEEeCCCCcEEEEecCc
Q 036585 252 E---VASWMSF-------DTEPPVIKWAPGSLMFVTGSSE 281 (304)
Q Consensus 252 ~---~~~~~~~-------~~~i~~~~~~~~~~~l~s~~~d 281 (304)
. ......+ -..|.++.|++....|..-|..
T Consensus 214 ~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~E 253 (316)
T COG3204 214 SSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDE 253 (316)
T ss_pred cccccccccCcccccceEeeccccceecCCCCcEEEEecC
Confidence 1 1111111 2357888898765544444444
No 394
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.41 E-value=0.00068 Score=36.50 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=30.8
Q ss_pred CCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCce
Q 036585 217 SRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKE 252 (304)
Q Consensus 217 ~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~ 252 (304)
....|..++|+|...+||.++.+|.|.+|.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 4567899999999999999999999999998 5554
No 395
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.39 E-value=0.057 Score=45.53 Aligned_cols=160 Identities=11% Similarity=0.080 Sum_probs=88.2
Q ss_pred cceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCC----CCEEEEcccCCeEEEEeCCc
Q 036585 58 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSS----KDCFISGSLDRTVLLWDQRA 133 (304)
Q Consensus 58 ~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~iwd~~~ 133 (304)
.++..++|. ||+.++...-.-.+|.+++=| .+.+ +.-..|..+.|.|- ...+++......|.+|.+..
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 478889997 565554443100023332211 1122 23346889999984 33566666778999999763
Q ss_pred ceee--ceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEE
Q 036585 134 EKCQ--GLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY 211 (304)
Q Consensus 134 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 211 (304)
.... +.+..+... +. +.-.---..+.|+|....|++-.....-.+++++........
T Consensus 92 s~~e~~K~l~sQtcE---i~------------------e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVka 150 (671)
T PF15390_consen 92 STTERNKLLMSQTCE---IR------------------EPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKA 150 (671)
T ss_pred Cccccccceeeeeee---cc------------------CCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEE
Confidence 2211 111100000 00 000011234779999888877665544456666543333322
Q ss_pred EeCCCCCCcceEEEEcCCCcEEEEec-CCCcEEEEecC
Q 036585 212 NVKPVSRNSTLEASFSPEGMFVISGS-GDGSVHAWSVR 248 (304)
Q Consensus 212 ~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~v~d~~ 248 (304)
.. ...+-|.|.+|.+||+.|+.+- ..=.-++||-.
T Consensus 151 Di--~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 151 DI--KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred ec--cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 22 3678999999999999877663 33356888854
No 396
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.39 E-value=0.055 Score=44.50 Aligned_cols=83 Identities=24% Similarity=0.418 Sum_probs=56.0
Q ss_pred CCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCc-ceEEEE-cCC----------------CcE-
Q 036585 172 DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS-TLEASF-SPE----------------GMF- 232 (304)
Q Consensus 172 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~-i~~~~~-s~~----------------~~~- 232 (304)
....+.++..+|++++.++...-|+|.++|+.++..++.++. .... +.-+.. .+. ..+
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKG---YRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKG---YRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhcc---CccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 345678899999999999888889999999998887776662 1111 000000 000 112
Q ss_pred EEEecCCCcEEEEecCCCceeeeee
Q 036585 233 VISGSGDGSVHAWSVRSGKEVASWM 257 (304)
Q Consensus 233 l~~~~~dg~i~v~d~~~~~~~~~~~ 257 (304)
++-+-.-|.|.||.++++..+..+.
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EEEeccCCeEEEEecCCCCEEEEEE
Confidence 2334568899999999998887764
No 397
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.37 E-value=0.045 Score=43.03 Aligned_cols=149 Identities=18% Similarity=0.175 Sum_probs=78.6
Q ss_pred ccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceE
Q 036585 99 KGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANV 178 (304)
Q Consensus 99 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 178 (304)
..-.+.+..+.-+++|++++++..-....-||.-...-....+ .....|..
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r-----------------------------~~~~riq~ 191 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNR-----------------------------NSSRRIQS 191 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE-------------------------------SSS-EEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEcc-----------------------------Cccceehh
Confidence 3345678888889999988888776666677754321111111 23467899
Q ss_pred EEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEe----CCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceee
Q 036585 179 VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV----KPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVA 254 (304)
Q Consensus 179 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~----~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~ 254 (304)
+.|+|++.+.+++ ..|.|++=+... ....+.. .......+..++|.+++...++|+. |.+ +.....|+.-+
T Consensus 192 ~gf~~~~~lw~~~-~Gg~~~~s~~~~--~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~ 266 (302)
T PF14870_consen 192 MGFSPDGNLWMLA-RGGQIQFSDDPD--DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQ 266 (302)
T ss_dssp EEE-TTS-EEEEE-TTTEEEEEE-TT--EEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-E
T ss_pred ceecCCCCEEEEe-CCcEEEEccCCC--CccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccce
Confidence 9999998865544 888888877221 1222221 1123334788999999887777764 433 34555666544
Q ss_pred eee---ccCCCCceEEeCCCCcEEEEecCc
Q 036585 255 SWM---SFDTEPPVIKWAPGSLMFVTGSSE 281 (304)
Q Consensus 255 ~~~---~~~~~i~~~~~~~~~~~l~s~~~d 281 (304)
..+ .-....+.+.|.++.+-++.|...
T Consensus 267 ~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G 296 (302)
T PF14870_consen 267 KDRVGENVPSNLYRIVFVNPDKGFVLGQDG 296 (302)
T ss_dssp E-GGGTTSSS---EEEEEETTEEEEE-STT
T ss_pred ECccccCCCCceEEEEEcCCCceEEECCCc
Confidence 432 234568899998777777777665
No 398
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.33 E-value=0.001 Score=48.58 Aligned_cols=111 Identities=15% Similarity=0.210 Sum_probs=70.0
Q ss_pred EeecccCcEEEEeeCCCeEEEEecCC-cceeeeecccccceeEEEEc-cCCCeEEEEecCCCCCceEEEEccCceeeeec
Q 036585 21 LQSMEVGIYLVTASDDESIRLYDVTA-ATCLKTINSKKYGVDLVCFT-SHPTTVIYSSKNGWDESLRLLSLHDNKYSRYF 98 (304)
Q Consensus 21 i~~~~~~~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~ 98 (304)
.....-+.-++.|+.+|.|.+|+..- +.....+..-...+.++--. .++.+..+++. |+.|+.|++.-++.+...
T Consensus 64 ~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~---dg~ir~~n~~p~k~~g~~ 140 (238)
T KOG2444|consen 64 QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQ---DGRIRACNIKPNKVLGYV 140 (238)
T ss_pred eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEecc---CCceeeeccccCceeeee
Confidence 34444577899999999999998762 12111122222233333222 23445666666 999999999988877777
Q ss_pred cccc-ccEEEEEEcCCCCEEEEc--ccCCeEEEEeCCcc
Q 036585 99 KGHH-DRVVLLSLCSSKDCFISG--SLDRTVLLWDQRAE 134 (304)
Q Consensus 99 ~~~~-~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~ 134 (304)
..|. .++..+..+..++.+..+ +.|..++.|++...
T Consensus 141 g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 141 GQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred ccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 7777 555555555556666666 66777777776543
No 399
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.23 E-value=0.059 Score=41.54 Aligned_cols=153 Identities=15% Similarity=0.111 Sum_probs=89.9
Q ss_pred ceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEe-CCcceee
Q 036585 59 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWD-QRAEKCQ 137 (304)
Q Consensus 59 ~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~~~ 137 (304)
.+.+.+++++++.++..........++++. .+....... ....+....|.+++...+....+...+++. ...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999888877210044455544 333333322 223678889999987766666666666663 2222211
Q ss_pred ceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEee---CCCeEEEEEcC---CC---cee
Q 036585 138 GLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT---MEGHIHVLDSF---RG---TLL 208 (304)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~~~d~~---~~---~~~ 208 (304)
. .... .......|..+.+||||..++.-. .++.|.+--+. .+ ...
T Consensus 102 ~-~~v~-------------------------~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~ 155 (253)
T PF10647_consen 102 P-VEVD-------------------------WPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLT 155 (253)
T ss_pred e-EEec-------------------------ccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceec
Confidence 1 1100 001112789999999999888765 34677776543 22 111
Q ss_pred EEEEeCCCCCCcceEEEEcCCCcEEEEecCCC
Q 036585 209 STYNVKPVSRNSTLEASFSPEGMFVISGSGDG 240 (304)
Q Consensus 209 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 240 (304)
............++.+.|.+++.+++.+...+
T Consensus 156 ~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 156 GPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred cceEecccccCcceeeeecCCCEEEEEeCCCC
Confidence 11222222356889999999998877775444
No 400
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.23 E-value=0.0018 Score=34.84 Aligned_cols=34 Identities=18% Similarity=0.156 Sum_probs=29.8
Q ss_pred CCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCce
Q 036585 173 ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL 207 (304)
Q Consensus 173 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 207 (304)
...|..++|+|...++|.++.+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 357889999999999999999999999998 5543
No 401
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.071 Score=46.22 Aligned_cols=201 Identities=12% Similarity=0.149 Sum_probs=108.6
Q ss_pred eeEeecccCcEEEEeeCC----------CeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEE
Q 036585 19 EILQSMEVGIYLVTASDD----------ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 88 (304)
Q Consensus 19 ~~i~~~~~~~~l~~~~~d----------~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd 88 (304)
.-+++.|.|.-||..-.+ -.|+|++.. |+++..+.-....+-.+.|+.+...++.. . +|++.+|+
T Consensus 36 ~~fa~Ap~gGpIAV~r~p~~~~~~~~a~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~eeLI~v~-k---~g~v~Vy~ 110 (829)
T KOG2280|consen 36 VYFACAPFGGPIAVTRSPSKLVPLYSARPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEELICVQ-K---DGTVHVYG 110 (829)
T ss_pred eEEEecccCCceEEEecccccccccccceeEEEEecc-ccchHHHHhcCCCeeeecccCCceEEEEe-c---cceEEEee
Confidence 345666666666655444 247888864 66666555444478899999776555554 4 99999999
Q ss_pred ccCceeeee--c--ccccccEEEEEEcCCCCEEEEcccCCeEEEE-eCCcceeeceEEE-e----cccee-EecCCC---
Q 036585 89 LHDNKYSRY--F--KGHHDRVVLLSLCSSKDCFISGSLDRTVLLW-DQRAEKCQGLLRV-Q----GRPAA-AYDDQG--- 154 (304)
Q Consensus 89 ~~~~~~~~~--~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw-d~~~~~~~~~~~~-~----~~~~~-~~~~~~--- 154 (304)
+.... +.. . ......|..+.+..+|-.+++. +|.+.+- +.+.... ..++. + ...+. .+.+..
T Consensus 111 ~~ge~-ie~~svg~e~~~~~I~ec~~f~~GVavlt~--~g~v~~i~~~~~~~~-~~~~diP~~~~~~~~Wt~~~~~~~~~ 186 (829)
T KOG2280|consen 111 LLGEF-IESNSVGFESQMSDIVECRFFHNGVAVLTV--SGQVILINGVEEPKL-RKMPDIPYNELPKSCWTVFQPHRQST 186 (829)
T ss_pred cchhh-hcccccccccccCceeEEEEecCceEEEec--CCcEEEEcCCCcchh-hhCCCCCCccCCCcceeEecCCCcce
Confidence 86432 221 1 1222345555555566333333 3444332 2222111 11100 0 00111 111111
Q ss_pred -----------eEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceE
Q 036585 155 -----------LVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE 223 (304)
Q Consensus 155 -----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~ 223 (304)
.+...+........+....+.+..+..||+.++|+.-...|.|.+-+....+....+... ...+...
T Consensus 187 ~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~--~~~~p~q 264 (829)
T KOG2280|consen 187 ILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCT--DHDPPKQ 264 (829)
T ss_pred eEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCC--CCCchHh
Confidence 111222233333333344567788999999999999999999999998888877777632 1222224
Q ss_pred EEEcCCC
Q 036585 224 ASFSPEG 230 (304)
Q Consensus 224 ~~~s~~~ 230 (304)
++|.-+.
T Consensus 265 m~Wcgnd 271 (829)
T KOG2280|consen 265 MAWCGND 271 (829)
T ss_pred ceeecCC
Confidence 5554443
No 402
>PHA02790 Kelch-like protein; Provisional
Probab=97.21 E-value=0.088 Score=44.88 Aligned_cols=186 Identities=9% Similarity=-0.014 Sum_probs=88.3
Q ss_pred ccCcEEEEeeCCC-----eEEEEecCCcceee--eecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee-
Q 036585 25 EVGIYLVTASDDE-----SIRLYDVTAATCLK--TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR- 96 (304)
Q Consensus 25 ~~~~~l~~~~~d~-----~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~- 96 (304)
.++.+++.|+.++ .+..||..+++-.. .+.........+ .-++...+.|+..+ ...+..||..+++...
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~-~~sve~ydp~~n~W~~~ 346 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPN-PTSVERWFHGDAAWVNM 346 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCC-CCceEEEECCCCeEEEC
Confidence 3455667777543 46678877654322 222211111122 23666667776521 3467888876654322
Q ss_pred -ecccccccEEEEEEcCCCCEEEEcccCC---eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCC
Q 036585 97 -YFKGHHDRVVLLSLCSSKDCFISGSLDR---TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGD 172 (304)
Q Consensus 97 -~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (304)
.+.........+. -+++..+.|+.++ .+..||.++.+....-.... .
T Consensus 347 ~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~---------------------------~ 397 (480)
T PHA02790 347 PSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY---------------------------P 397 (480)
T ss_pred CCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC---------------------------c
Confidence 2221111111222 2566777777543 35567766554322111000 0
Q ss_pred CCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC-----CcEEEEec
Q 036585 173 ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-----GSVHAWSV 247 (304)
Q Consensus 173 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~v~d~ 247 (304)
.... .+..-+++..+.| |.+.+||.++.+....-.. +........+. -+++..+.|+.+ ..+..||.
T Consensus 398 r~~~--~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m-~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~ 469 (480)
T PHA02790 398 HYKS--CALVFGRRLFLVG---RNAEFYCESSNTWTLIDDP-IYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNN 469 (480)
T ss_pred cccc--eEEEECCEEEEEC---CceEEecCCCCcEeEcCCC-CCCccccEEEE--ECCEEEEECCcCCCcccceEEEEEC
Confidence 0111 1123356666666 3577899877655432211 11122222222 367777777754 34666776
Q ss_pred CCC
Q 036585 248 RSG 250 (304)
Q Consensus 248 ~~~ 250 (304)
.+.
T Consensus 470 ~~~ 472 (480)
T PHA02790 470 RTY 472 (480)
T ss_pred CCC
Confidence 543
No 403
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=97.20 E-value=0.029 Score=48.41 Aligned_cols=115 Identities=11% Similarity=0.151 Sum_probs=80.2
Q ss_pred CCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEc--CCCcEEEEecCCCcEEEEecC---
Q 036585 174 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS--PEGMFVISGSGDGSVHAWSVR--- 248 (304)
Q Consensus 174 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s--~~~~~l~~~~~dg~i~v~d~~--- 248 (304)
....-+.-+.-++.-++.+....+.|||.+.+........ ...+.|..+.|. |+++.+++.+-.+.|.+|.-.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f--~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF--SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee--cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 3445566666666666655666899999998875544443 356788888886 588888888889999998542
Q ss_pred --CC----ceeeee--eccC-CCCceEEeCCCCcEEEEecCceEEeccCCc
Q 036585 249 --SG----KEVASW--MSFD-TEPPVIKWAPGSLMFVTGSSELSFWIPDLS 290 (304)
Q Consensus 249 --~~----~~~~~~--~~~~-~~i~~~~~~~~~~~l~s~~~d~~iw~~~~~ 290 (304)
+. .+++.+ ..|. .+|.+..|.++|..++.++..+.|++-...
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk~~~ 158 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDKWLD 158 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECCCcC
Confidence 11 223333 3333 679999999999888877777888876544
No 404
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.19 E-value=0.011 Score=44.95 Aligned_cols=109 Identities=15% Similarity=0.208 Sum_probs=76.8
Q ss_pred ceEEEEecCC-cEEEEeeCCCe-EEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecC-----CCcEEEEecC
Q 036585 176 ANVVKFSNDG-RLMLLTTMEGH-IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG-----DGSVHAWSVR 248 (304)
Q Consensus 176 v~~~~~~~~~-~~l~~~~~dg~-i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-----dg~i~v~d~~ 248 (304)
...++++|.- .-++.+-.-|+ ..++|....+...++.... ....--.=.|||||.+|++.-. .|.|-|||.+
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~-~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQE-GRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEeccc-CceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 3457777753 34555555554 5788988877666655221 1111222479999999998743 3689999997
Q ss_pred C-CceeeeeeccCCCCceEEeCCCCcEEEEecCceEEe
Q 036585 249 S-GKEVASWMSFDTEPPVIKWAPGSLMFVTGSSELSFW 285 (304)
Q Consensus 249 ~-~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~iw 285 (304)
. .+.+.++..|.-....+.|.+||+.++.+...|...
T Consensus 149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIeth 186 (366)
T COG3490 149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETH 186 (366)
T ss_pred cccceecccccCCcCcceeEEecCCcEEEEeCCceecc
Confidence 5 355788888988889999999999999988866665
No 405
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.14 E-value=0.06 Score=39.90 Aligned_cols=140 Identities=15% Similarity=0.113 Sum_probs=82.3
Q ss_pred cceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccccc--------ccEEEEEEcCCCCEEEE-cccCCeEEE
Q 036585 58 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHH--------DRVVLLSLCSSKDCFIS-GSLDRTVLL 128 (304)
Q Consensus 58 ~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~-~~~dg~i~i 128 (304)
...+.-..+|+|+++.-... |-.- .+....++....+.+|. .--..++|+.+.+.++. -+.+-.|.-
T Consensus 109 nR~NDgkvdP~Gryy~GtMa---d~~~-~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMA---DFGD-DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred cccccCccCCCCceeeeeec---cccc-cccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence 35566677899998433322 2111 22222233333333332 22356788876665544 456667877
Q ss_pred Ee--CCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecC----CCCCceEEEEecCCcEEEEeeCCCeEEEEEc
Q 036585 129 WD--QRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGG----DISDANVVKFSNDGRLMLLTTMEGHIHVLDS 202 (304)
Q Consensus 129 wd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~ 202 (304)
|| ..++.....- .+++++. .....-.+++..+|++.++.-..|+|...|.
T Consensus 185 ~dyd~~tG~~snr~------------------------~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp 240 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRK------------------------VIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP 240 (310)
T ss_pred eecCCCcccccCcc------------------------eeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence 77 4454432211 1122211 1112233556678888888888899999999
Q ss_pred CCCceeEEEEeCCCCCCcceEEEEcC
Q 036585 203 FRGTLLSTYNVKPVSRNSTLEASFSP 228 (304)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~i~~~~~s~ 228 (304)
.+|+.+.++.. ....++++||--
T Consensus 241 ~tGK~L~eikl---Pt~qitsccFgG 263 (310)
T KOG4499|consen 241 TTGKILLEIKL---PTPQITSCCFGG 263 (310)
T ss_pred CCCcEEEEEEc---CCCceEEEEecC
Confidence 99999999994 467899999964
No 406
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.06 E-value=0.1 Score=41.10 Aligned_cols=159 Identities=8% Similarity=0.049 Sum_probs=77.7
Q ss_pred cccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcce
Q 036585 56 KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEK 135 (304)
Q Consensus 56 ~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 135 (304)
....+..+..++++++++++.. -....-||.-...-...-+.-...|.++.|.|++.+.+.+ ..|.|+.=+.....
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~---G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSR---GNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETT---SSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred CcceeEeEEECCCCcEEEEECc---ccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence 3467888889999999888874 3344466644322222222345789999999998766654 77888876621111
Q ss_pred eeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCC
Q 036585 136 CQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP 215 (304)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 215 (304)
.......... ....-.+..++|.+++...++|+ .|.+ +.....|+.-..-....
T Consensus 219 ~~w~~~~~~~------------------------~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~ 272 (302)
T PF14870_consen 219 ETWSEPIIPI------------------------KTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGE 272 (302)
T ss_dssp EEE---B-TT------------------------SS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGT
T ss_pred cccccccCCc------------------------ccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECcccc
Confidence 1110000000 01112467789998887666555 4443 34445555444443222
Q ss_pred CCCCcceEEEEcCCCcEEEEecCCCcEEEE
Q 036585 216 VSRNSTLEASFSPEGMFVISGSGDGSVHAW 245 (304)
Q Consensus 216 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~ 245 (304)
.....++.+.|.++.+-++.| .+|.|--|
T Consensus 273 ~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 273 NVPSNLYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp TSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred CCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence 345568888998776666666 57766544
No 407
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.05 E-value=0.075 Score=39.39 Aligned_cols=96 Identities=13% Similarity=0.149 Sum_probs=64.5
Q ss_pred ceEEEEecCCcEEEE-eeCCCeEEEEE--cCCCcee-----EEEEeC-CCCCCcceEEEEcCCCcEEEEecCCCcEEEEe
Q 036585 176 ANVVKFSNDGRLMLL-TTMEGHIHVLD--SFRGTLL-----STYNVK-PVSRNSTLEASFSPEGMFVISGSGDGSVHAWS 246 (304)
Q Consensus 176 v~~~~~~~~~~~l~~-~~~dg~i~~~d--~~~~~~~-----~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d 246 (304)
-+.++|+.+.+.+.. -+.+-.|.-|| ..+|... ..++.. +......-.++...+|++.++.-..++|...|
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 356788877766654 45566676666 5555432 222210 01111223456677888888887888999999
Q ss_pred cCCCceeeeeeccCCCCceEEeCCC
Q 036585 247 VRSGKEVASWMSFDTEPPVIKWAPG 271 (304)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~~~~~~~~ 271 (304)
..+|+.+.++.-....|++++|-.-
T Consensus 240 p~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred CCCCcEEEEEEcCCCceEEEEecCC
Confidence 9999999999888999999999643
No 408
>PRK10115 protease 2; Provisional
Probab=97.05 E-value=0.21 Score=44.58 Aligned_cols=112 Identities=13% Similarity=0.096 Sum_probs=67.1
Q ss_pred eeEeecccCcEEEEeeCC-----CeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCC---CCCceEEEEcc
Q 036585 19 EILQSMEVGIYLVTASDD-----ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG---WDESLRLLSLH 90 (304)
Q Consensus 19 ~~i~~~~~~~~l~~~~~d-----~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~---~d~~i~vwd~~ 90 (304)
..+.++|+|++|+.+... ..|++.|+.+++.+...-... -..++|.+|++.|+...... ....|+.+++.
T Consensus 130 ~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lg 207 (686)
T PRK10115 130 GGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIG 207 (686)
T ss_pred eEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECC
Confidence 346788999988866432 358889998886432222122 14599999999888776520 13477888888
Q ss_pred Cc--eeeeecccccccEE-EEEEcCCCCEEEEcc---cCCeEEEEeCC
Q 036585 91 DN--KYSRYFKGHHDRVV-LLSLCSSKDCFISGS---LDRTVLLWDQR 132 (304)
Q Consensus 91 ~~--~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~---~dg~i~iwd~~ 132 (304)
++ +-...+........ ....+.++++++..+ .++.+.+++..
T Consensus 208 t~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 208 TPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred CChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 77 33334443333333 233344777665443 34568888743
No 409
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.08 Score=38.52 Aligned_cols=181 Identities=15% Similarity=0.064 Sum_probs=98.9
Q ss_pred cCcEEEEeeCCC--eEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccc
Q 036585 26 VGIYLVTASDDE--SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHD 103 (304)
Q Consensus 26 ~~~~l~~~~~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 103 (304)
+|.++.+.+.-| .|++||+.+++.+..-.-....+..=-...-+..+..-.-. ++.-..+|..+-+.+..+. ..+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~--egvaf~~d~~t~~~lg~~~-y~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWK--EGVAFKYDADTLEELGRFS-YEG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEec--cceeEEEChHHhhhhcccc-cCC
Confidence 366677666433 59999999988775543221111111111123333333222 8888999998887776665 334
Q ss_pred cEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEec
Q 036585 104 RVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSN 183 (304)
Q Consensus 104 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 183 (304)
.=+.++. ++..|+.++...+++.-|.++......+...... ..-..++.+.|-
T Consensus 132 eGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g------------------------~pv~~LNELE~V- 184 (262)
T COG3823 132 EGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDG------------------------VPVSKLNELEWV- 184 (262)
T ss_pred cceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECC------------------------eecccccceeee-
Confidence 4455543 4555666666677888787776655544321110 011223334442
Q ss_pred CCcEEEEeeCCCeEEEEEcCCCceeEEEEeC---------CCCCCcceEEEEcCCC-cEEEEe
Q 036585 184 DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK---------PVSRNSTLEASFSPEG-MFVISG 236 (304)
Q Consensus 184 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~---------~~~~~~i~~~~~s~~~-~~l~~~ 236 (304)
+|...+-.=.+..|...|..+|+....+... ..+..-.+.+++.|++ +++++|
T Consensus 185 dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 185 DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 4444443334445555666666665554421 1234567789999977 455555
No 410
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.95 E-value=0.099 Score=45.32 Aligned_cols=113 Identities=12% Similarity=0.196 Sum_probs=73.4
Q ss_pred EEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEE--e
Q 036585 105 VVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKF--S 182 (304)
Q Consensus 105 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~ 182 (304)
..-+.-+.-++..++-+....+.|||.+.+........ .....|..+.| .
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f----------------------------~~~~~I~dLDWtst 83 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF----------------------------SEDDPIRDLDWTST 83 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee----------------------------cCCCceeeceeeec
Confidence 34444444454444444556899999988774333221 13467788887 4
Q ss_pred cCCcEEEEeeCCCeEEEEEc---------CCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEec
Q 036585 183 NDGRLMLLTTMEGHIHVLDS---------FRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSV 247 (304)
Q Consensus 183 ~~~~~l~~~~~dg~i~~~d~---------~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~ 247 (304)
|+++.+++.+....|.+|-- .+...++.+........+|.+..|-++|..++.++ +.+.|+|-
T Consensus 84 ~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 84 PDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred CCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 68888888888999999853 12344555554433457899999999997665553 45888764
No 411
>PHA03098 kelch-like protein; Provisional
Probab=96.86 E-value=0.18 Score=43.77 Aligned_cols=102 Identities=9% Similarity=0.137 Sum_probs=50.3
Q ss_pred CCcEEEEeeCC------CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC--------CcEEEEecCC
Q 036585 184 DGRLMLLTTME------GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD--------GSVHAWSVRS 249 (304)
Q Consensus 184 ~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--------g~i~v~d~~~ 249 (304)
+++..+.|+.+ ..+..||..+.+....-..+ ...... ++ ...++..++.|+.+ ..+.+||..+
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p-~~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLP-ISHYGG-CA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCC-ccccCc-eE-EEECCEEEEECCccCCCCCcccceEEEecCCC
Confidence 56666666632 45888998776543322111 111111 12 22356666777643 2388899876
Q ss_pred Cce--eeeeeccCCCCceEEeCCCCcEEEEecCc-------eEEeccCCc
Q 036585 250 GKE--VASWMSFDTEPPVIKWAPGSLMFVTGSSE-------LSFWIPDLS 290 (304)
Q Consensus 250 ~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-------~~iw~~~~~ 290 (304)
.+- +..+.........+.+ +++.++.|+.+ +.+|+.+.+
T Consensus 466 ~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 466 NKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 542 2222111111122222 66777777643 556665544
No 412
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.021 Score=51.59 Aligned_cols=147 Identities=10% Similarity=0.041 Sum_probs=93.5
Q ss_pred cceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee-----eeeccc------ccccEEEEEEcCCCC-EEEEcccCCe
Q 036585 58 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY-----SRYFKG------HHDRVVLLSLCSSKD-CFISGSLDRT 125 (304)
Q Consensus 58 ~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~-----~~~~~~------~~~~v~~~~~~~~~~-~l~~~~~dg~ 125 (304)
-++..+...+|+...++..... +-.|..||+++-.. ..-+.. ......++.|+|.-. ..+....|+.
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsn-g~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSN-GEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred ccceEEEeccCCceEEEEEecC-CceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 3566777778877766665522 55889999975321 111111 223456778887533 4566677888
Q ss_pred EEEEeCCcceee-ceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCC
Q 036585 126 VLLWDQRAEKCQ-GLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR 204 (304)
Q Consensus 126 i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 204 (304)
|++..+...... ..+. -....++++|+|.|+.+++|...|++.-|.. +
T Consensus 180 l~V~~~~~~~~~v~s~p------------------------------~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~ 228 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP------------------------------VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-S 228 (1405)
T ss_pred hhhhhhhhhhhhhcccC------------------------------cccceeeEEeccccceeeEecCCCeEEEeec-c
Confidence 887665432211 1111 1245789999999999999999999999874 4
Q ss_pred CceeEEEEeCCCC-CCcceEEEEcCCCcEEEEe
Q 036585 205 GTLLSTYNVKPVS-RNSTLEASFSPEGMFVISG 236 (304)
Q Consensus 205 ~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~ 236 (304)
.+....+..++.. ...|.+++|-....++++-
T Consensus 229 leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 229 LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred cceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence 5555555443333 3789999998776666543
No 413
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.12 Score=37.70 Aligned_cols=180 Identities=16% Similarity=0.081 Sum_probs=89.8
Q ss_pred CCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEE-EcccCCeEEEEeCCcceeeceEEEeccc
Q 036585 68 HPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFI-SGSLDRTVLLWDQRAEKCQGLLRVQGRP 146 (304)
Q Consensus 68 ~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 146 (304)
++..+.+.+.-| ...|++||+.+++.+.+.+-....+..=-...-+..+. -.-.+|.-..+|.++-++...+..++.
T Consensus 55 ~g~i~esTG~yg-~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge- 132 (262)
T COG3823 55 DGHILESTGLYG-FSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGE- 132 (262)
T ss_pred CCEEEEeccccc-cceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCc-
Confidence 444555554433 67899999999887665442222222111111122222 234578888888888777666543322
Q ss_pred eeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCC--CCCCcceEE
Q 036585 147 AAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP--VSRNSTLEA 224 (304)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~~~~i~~~ 224 (304)
-..+ ..|++.|+.+....+++.-|.++-....+..... ..-..++.+
T Consensus 133 -----------------------------GWgL--t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNEL 181 (262)
T COG3823 133 -----------------------------GWGL--TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNEL 181 (262)
T ss_pred -----------------------------ceee--ecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccce
Confidence 1112 2345556655555566666655544333333110 011122233
Q ss_pred EEcCCCcEEEEecCCCcEEEEecCCCceeeee------------eccCCCCceEEeCCCCcEEEEecCc
Q 036585 225 SFSPEGMFVISGSGDGSVHAWSVRSGKEVASW------------MSFDTEPPVIKWAPGSLMFVTGSSE 281 (304)
Q Consensus 225 ~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~------------~~~~~~i~~~~~~~~~~~l~s~~~d 281 (304)
.|- ||...|-.=.+..|...|..+|+.+..+ ..+....+.+++.|++..+...+..
T Consensus 182 E~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~ 249 (262)
T COG3823 182 EWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKL 249 (262)
T ss_pred eee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCc
Confidence 332 3433332223333444455555543322 2345567899999988555544444
No 414
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.76 E-value=0.24 Score=40.69 Aligned_cols=103 Identities=14% Similarity=0.105 Sum_probs=56.7
Q ss_pred CceEEEEecCCcEEEEeeCCCeEEEE-EcCC-----CceeEEEEeCCC----CCCcceEEEEcCCCcEEEEecCC-----
Q 036585 175 DANVVKFSNDGRLMLLTTMEGHIHVL-DSFR-----GTLLSTYNVKPV----SRNSTLEASFSPEGMFVISGSGD----- 239 (304)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~~dg~i~~~-d~~~-----~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~d----- 239 (304)
..+.+++.++| |++++.. .|..| |... ++....+..... +......++|.|||.+.++-+..
T Consensus 73 ~p~Gi~~~~~G--lyV~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~ 149 (367)
T TIGR02604 73 MVTGLAVAVGG--VYVATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKV 149 (367)
T ss_pred CccceeEecCC--EEEeCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCcee
Confidence 45778888888 4444444 45444 4421 122222221111 23457789999999766544421
Q ss_pred --------------CcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc
Q 036585 240 --------------GSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE 281 (304)
Q Consensus 240 --------------g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 281 (304)
|.|.-++...++ +..+.........++|+|+|+++++-..+
T Consensus 150 ~~~~~~~~~~~~~~g~i~r~~pdg~~-~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 150 TRPGTSDESRQGLGGGLFRYNPDGGK-LRVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred ccCCCccCcccccCceEEEEecCCCe-EEEEecCcCCCccceECCCCCEEEEccCC
Confidence 345555554433 33332223446789999999888765544
No 415
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.74 E-value=0.28 Score=42.74 Aligned_cols=190 Identities=16% Similarity=0.172 Sum_probs=98.8
Q ss_pred cCcEEEEeeCC-C-----eEEEEecCCcceee--eecccccceeEEEEccCCCeEEEEecCCC--CCceEEEEccCceee
Q 036585 26 VGIYLVTASDD-E-----SIRLYDVTAATCLK--TINSKKYGVDLVCFTSHPTTVIYSSKNGW--DESLRLLSLHDNKYS 95 (304)
Q Consensus 26 ~~~~l~~~~~d-~-----~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~~~~--d~~i~vwd~~~~~~~ 95 (304)
.|...++|+.| | ++..||..+++-.. .+...........+ +|...++|+.++. -.++-.||..+.+..
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~ 409 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWT 409 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCccc
Confidence 46788899988 3 46678877655222 22222222222222 6777788877221 134777887776532
Q ss_pred eecccccccEEEEEE-cCCCCEEEEcccCC------eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEE
Q 036585 96 RYFKGHHDRVVLLSL-CSSKDCFISGSLDR------TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFS 168 (304)
Q Consensus 96 ~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (304)
..-. .......... .-++...++|+.++ .+..||..+.+....-......
T Consensus 410 ~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R---------------------- 466 (571)
T KOG4441|consen 410 PVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR---------------------- 466 (571)
T ss_pred ccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc----------------------
Confidence 2111 1112222222 12677778887554 4667777766543322211110
Q ss_pred ecCCCCCceEEEEecCCcEEEEeeCCC-----eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCC---
Q 036585 169 VGGDISDANVVKFSNDGRLMLLTTMEG-----HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG--- 240 (304)
Q Consensus 169 ~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--- 240 (304)
.... + -.-++.+.++|+.++ +|..||..+.+....-.. ......+.... -++...+.|+.||
T Consensus 467 -----~~~g-~-a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m-~~~rs~~g~~~--~~~~ly~vGG~~~~~~ 536 (571)
T KOG4441|consen 467 -----SGFG-V-AVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM-TSPRSAVGVVV--LGGKLYAVGGFDGNNN 536 (571)
T ss_pred -----ccce-E-EEECCEEEEECCccCCCccceEEEEcCCCCceeEcccC-ccccccccEEE--ECCEEEEEecccCccc
Confidence 0111 1 223677788888776 378899887765544221 11222222222 2666777887775
Q ss_pred --cEEEEecCCC
Q 036585 241 --SVHAWSVRSG 250 (304)
Q Consensus 241 --~i~v~d~~~~ 250 (304)
+|..||..+.
T Consensus 537 l~~ve~ydp~~d 548 (571)
T KOG4441|consen 537 LNTVECYDPETD 548 (571)
T ss_pred cceeEEcCCCCC
Confidence 4667776554
No 416
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.63 E-value=0.2 Score=38.20 Aligned_cols=241 Identities=11% Similarity=0.086 Sum_probs=141.0
Q ss_pred eeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee-e
Q 036585 19 EILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR-Y 97 (304)
Q Consensus 19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~-~ 97 (304)
..+.-.+||..-+++...+.|--.|..+++....--+.......+..-||+..-++-+. . -|.-.|-++.+..+ .
T Consensus 65 ~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~---~-aI~R~dpkt~evt~f~ 140 (353)
T COG4257 65 FDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTG---L-AIGRLDPKTLEVTRFP 140 (353)
T ss_pred cccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCc---c-eeEEecCcccceEEee
Confidence 34666778888888888888888888888877666666666777888888877666553 3 55555655543211 1
Q ss_pred --cccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCC
Q 036585 98 --FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISD 175 (304)
Q Consensus 98 --~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (304)
.+.-........|.+.|++-+++.. |.---.|..+. .+.+|... ....
T Consensus 141 lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~~----------------------------~i~vfpaP-qG~g 190 (353)
T COG4257 141 LPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPARN----------------------------VISVFPAP-QGGG 190 (353)
T ss_pred cccccCCCcccceeeCCCccEEEeecc-ccceecCcccC----------------------------ceeeeccC-CCCC
Confidence 1222346777889999988887652 21111111110 01111111 1234
Q ss_pred ceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeee
Q 036585 176 ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVAS 255 (304)
Q Consensus 176 v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~ 255 (304)
...++..|+|..-++.-.+..|-..|..++ ....+............+--+|.|+.-++....+.++.+|..+.. -.+
T Consensus 191 pyGi~atpdGsvwyaslagnaiaridp~~~-~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~e 268 (353)
T COG4257 191 PYGICATPDGSVWYASLAGNAIARIDPFAG-HAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIE 268 (353)
T ss_pred CcceEECCCCcEEEEeccccceEEcccccC-CcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-cee
Confidence 566888999998888777788888888777 333444333323444556667888888887778888888876543 222
Q ss_pred --eeccCCCCceEEeCCCCcEEEE-ecCc-eEEeccCCcccccc
Q 036585 256 --WMSFDTEPPVIKWAPGSLMFVT-GSSE-LSFWIPDLSKLGAY 295 (304)
Q Consensus 256 --~~~~~~~i~~~~~~~~~~~l~s-~~~d-~~iw~~~~~~~~~~ 295 (304)
+.+....-.++.....++.-.+ .+.. +.-++.+...+..+
T Consensus 269 ypLPgs~arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~ 312 (353)
T COG4257 269 YPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVL 312 (353)
T ss_pred eeCCCCCCCcceeeeccCCcEEeeccccCceeecCcccceEEEe
Confidence 2333444455555544443331 2222 44444444444443
No 417
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.54 E-value=0.15 Score=43.16 Aligned_cols=114 Identities=13% Similarity=0.106 Sum_probs=68.7
Q ss_pred CCceEEEEecC----CcEEEEeeCCCeEEEEEcC-----CCceeEEEEeCCCCCCc--ceEEEEcCCCcEEEEecCCCcE
Q 036585 174 SDANVVKFSND----GRLMLLTTMEGHIHVLDSF-----RGTLLSTYNVKPVSRNS--TLEASFSPEGMFVISGSGDGSV 242 (304)
Q Consensus 174 ~~v~~~~~~~~----~~~l~~~~~dg~i~~~d~~-----~~~~~~~~~~~~~~~~~--i~~~~~s~~~~~l~~~~~dg~i 242 (304)
..|..+.|.|- -..+++......|.+|.+. +++.+.....+....-+ -..+.|+|....|+.-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 35677888884 2245555566789999874 23333332221111111 2346899998888776655544
Q ss_pred EEEecCC--CceeeeeeccCCCCceEEeCCCCcEEEEecCc-eEEeccC
Q 036585 243 HAWSVRS--GKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE-LSFWIPD 288 (304)
Q Consensus 243 ~v~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~~ 288 (304)
.+++++. .+....+ ...+.|.|.+|.+||+.|+.+-.. +.-|.|+
T Consensus 137 V~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWD 184 (671)
T ss_pred EeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEec
Confidence 5566543 2223333 456789999999999988777666 4444443
No 418
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=96.46 E-value=0.087 Score=43.72 Aligned_cols=61 Identities=8% Similarity=0.099 Sum_probs=48.7
Q ss_pred CCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc-eEEeccCC
Q 036585 229 EGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE-LSFWIPDL 289 (304)
Q Consensus 229 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~~~ 289 (304)
...|+|+++..|.|++||.-.-+....+++....|-.+..+.+|.++++.+.. +.+-+...
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~i 633 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVPI 633 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEeccc
Confidence 45599999999999999964444445567788889999999999998888888 77766654
No 419
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=96.41 E-value=0.24 Score=36.46 Aligned_cols=103 Identities=16% Similarity=0.272 Sum_probs=64.9
Q ss_pred cEEEEeeCCCeEEEEEcC--CCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC---C---cEEEE---ecC--CCce
Q 036585 186 RLMLLTTMEGHIHVLDSF--RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD---G---SVHAW---SVR--SGKE 252 (304)
Q Consensus 186 ~~l~~~~~dg~i~~~d~~--~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g---~i~v~---d~~--~~~~ 252 (304)
..|+++...+.|.+|++. ..+...++. .-+.|..+.++..|+||++--.+ . .+|+| ... ..++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~----Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~ 104 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS----TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSP 104 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc----chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence 445555667789999988 344555555 55889999999999999987322 2 56665 221 1111
Q ss_pred ee-eeec---------------------cCCCCceEEeCCCCcEEEEecCc-eEEeccCCccc
Q 036585 253 VA-SWMS---------------------FDTEPPVIKWAPGSLMFVTGSSE-LSFWIPDLSKL 292 (304)
Q Consensus 253 ~~-~~~~---------------------~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~~~~~~ 292 (304)
+. .+-| -..++.+++..|-..-|+.|+.+ +.||.+.....
T Consensus 105 v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~ 167 (215)
T PF14761_consen 105 VRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTI 167 (215)
T ss_pred EEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEE
Confidence 11 1111 23467888888865556666666 88987754443
No 420
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.39 E-value=0.39 Score=38.68 Aligned_cols=117 Identities=19% Similarity=0.272 Sum_probs=73.6
Q ss_pred CceEEEEecCCcEEEEeeCC------CeEEEEEcCCCceeEEEEeCC------------CCCCcceEEEEcCCCcEEEEe
Q 036585 175 DANVVKFSNDGRLMLLTTME------GHIHVLDSFRGTLLSTYNVKP------------VSRNSTLEASFSPEGMFVISG 236 (304)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~------------~~~~~i~~~~~s~~~~~l~~~ 236 (304)
....|++.++|.++++.-.+ ..|+.++.. |+....+..+. ..+...-+++++|+|+.|+++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 45568887788877776666 789899976 77666653221 134567789999999976665
Q ss_pred cC-----CC--c-------EEE--EecCC-Cceeeee----ec-----cCCCCceEEeCCCCcEEEEecC-----c--eE
Q 036585 237 SG-----DG--S-------VHA--WSVRS-GKEVASW----MS-----FDTEPPVIKWAPGSLMFVTGSS-----E--LS 283 (304)
Q Consensus 237 ~~-----dg--~-------i~v--~d~~~-~~~~~~~----~~-----~~~~i~~~~~~~~~~~l~s~~~-----d--~~ 283 (304)
.+ |+ . +++ ||..+ ++....+ .. ....|+.+.+-+++++|+-=-. . .+
T Consensus 165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~r 244 (326)
T PF13449_consen 165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKR 244 (326)
T ss_pred ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEE
Confidence 32 22 1 444 45444 3233332 21 3467889999999987754222 2 78
Q ss_pred EeccCCccc
Q 036585 284 FWIPDLSKL 292 (304)
Q Consensus 284 iw~~~~~~~ 292 (304)
|+.++....
T Consensus 245 i~~v~l~~a 253 (326)
T PF13449_consen 245 IYRVDLSDA 253 (326)
T ss_pred EEEEEcccc
Confidence 887765543
No 421
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.37 E-value=0.39 Score=39.41 Aligned_cols=151 Identities=17% Similarity=0.171 Sum_probs=75.7
Q ss_pred ceeEEEEccCCCeEEEEecC--------CCCC-ceEEEEccC--ce--eeeecccccccEEEEEEcCCCCEEEEcccCCe
Q 036585 59 GVDLVCFTSHPTTVIYSSKN--------GWDE-SLRLLSLHD--NK--YSRYFKGHHDRVVLLSLCSSKDCFISGSLDRT 125 (304)
Q Consensus 59 ~v~~~~~~~~~~~l~~~~~~--------~~d~-~i~vwd~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 125 (304)
....|+|.++|+.+++-..+ ...+ .|.+++-.+ ++ ....+.........+++.+++ ++++ .....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCCeE
Confidence 46678999988877665310 0022 676665433 22 223333333456788998888 4444 44433
Q ss_pred EEEEeCCcce-----eeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC-------
Q 036585 126 VLLWDQRAEK-----CQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM------- 193 (304)
Q Consensus 126 i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------- 193 (304)
.++.|..... ....+..-.... ..+......++|.|||.+.++-+.
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~----------------------~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~ 150 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQI----------------------NNHHHSLNSLAWGPDGWLYFNHGNTLASKVT 150 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCC----------------------CcccccccCceECCCCCEEEecccCCCceec
Confidence 3343443211 111111000000 001234566778888765544331
Q ss_pred ------------CCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEec
Q 036585 194 ------------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS 237 (304)
Q Consensus 194 ------------dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 237 (304)
.|.|.-++..+++. ..+. ..-.....++|+|+|+++++-.
T Consensus 151 ~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a---~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 151 RPGTSDESRQGLGGGLFRYNPDGGKL-RVVA---HGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCccCcccccCceEEEEecCCCeE-EEEe---cCcCCCccceECCCCCEEEEcc
Confidence 14566666655443 2232 1233456789999998876644
No 422
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.093 Score=42.91 Aligned_cols=107 Identities=10% Similarity=0.172 Sum_probs=73.0
Q ss_pred CCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEe-CCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC
Q 036585 172 DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV-KPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG 250 (304)
Q Consensus 172 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~ 250 (304)
..++|.++.||+|.+.+++--.+.+|.+++....+....... .......|...+|+.. .-+|.....| +-+|-....
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 446899999999999999999999999999743332222211 1124456888999876 4566665444 777766443
Q ss_pred -ceeeeeeccCCCCceEEeCCCCcEEEEecC
Q 036585 251 -KEVASWMSFDTEPPVIKWAPGSLMFVTGSS 280 (304)
Q Consensus 251 -~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 280 (304)
+.++..+.|...|+-..|.++-+.+.-++.
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 235555678888888889888775544443
No 423
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.30 E-value=0.45 Score=38.44 Aligned_cols=225 Identities=15% Similarity=0.172 Sum_probs=112.4
Q ss_pred ceeeEeecccCcEEEEeeCCCeEEEEecCCcce---eeee----cccccceeEEEEccC---CCeEEEEecC------CC
Q 036585 17 SEEILQSMEVGIYLVTASDDESIRLYDVTAATC---LKTI----NSKKYGVDLVCFTSH---PTTVIYSSKN------GW 80 (304)
Q Consensus 17 ~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~---~~~~----~~~~~~v~~~~~~~~---~~~l~~~~~~------~~ 80 (304)
++-.+.+.|+|+++++ ...|.|++++ .++.. +..+ .........++++|+ ..+|.+.... ..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3557889999877665 5699999999 33333 2222 223457899999994 2334333320 00
Q ss_pred CCceEEEEccCc-------eee-eeccc---ccccEEEEEEcCCCCEEEEcccC-------------CeEEEEeCCcce-
Q 036585 81 DESLRLLSLHDN-------KYS-RYFKG---HHDRVVLLSLCSSKDCFISGSLD-------------RTVLLWDQRAEK- 135 (304)
Q Consensus 81 d~~i~vwd~~~~-------~~~-~~~~~---~~~~v~~~~~~~~~~~l~~~~~d-------------g~i~iwd~~~~~- 135 (304)
+..|.-|....+ +.+ ..+.. ....-..+.|.|++.+.++.+.. |.|.-.+....-
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 124444544433 111 11111 22345679999999766654432 333333432110
Q ss_pred -----------eeceEE--EeccceeEecCC-CeEEEecCCC---eEEEEecC---------------------------
Q 036585 136 -----------CQGLLR--VQGRPAAAYDDQ-GLVFGYEKGP---LDIFSVGG--------------------------- 171 (304)
Q Consensus 136 -----------~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~--------------------------- 171 (304)
....+. .....-+++++. +.++..+.+. -.+..+..
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCP 240 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-T
T ss_pred CCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCC
Confidence 011111 112224566776 6666443221 12211110
Q ss_pred ----------CCCCceEEEEec-------CCcEEEEeeCCCeEEEEEcCCCceeEEE-EeCCCCCCcceEEEEcCCCcEE
Q 036585 172 ----------DISDANVVKFSN-------DGRLMLLTTMEGHIHVLDSFRGTLLSTY-NVKPVSRNSTLEASFSPEGMFV 233 (304)
Q Consensus 172 ----------~~~~v~~~~~~~-------~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l 233 (304)
+...+..+.|-. .|.+|+..-..+.|....+..+..+... .........+..+++.|||.+.
T Consensus 241 ~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Ly 320 (331)
T PF07995_consen 241 GFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALY 320 (331)
T ss_dssp TS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEE
T ss_pred CcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEE
Confidence 112333444432 3455665555678888887655433322 2222344478999999999988
Q ss_pred EEecCCCcEE
Q 036585 234 ISGSGDGSVH 243 (304)
Q Consensus 234 ~~~~~dg~i~ 243 (304)
++.+.+|.|+
T Consensus 321 v~~d~~G~iy 330 (331)
T PF07995_consen 321 VSDDSDGKIY 330 (331)
T ss_dssp EEE-TTTTEE
T ss_pred EEECCCCeEe
Confidence 8888888774
No 424
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=96.19 E-value=0.4 Score=42.25 Aligned_cols=74 Identities=12% Similarity=0.076 Sum_probs=51.1
Q ss_pred CCceEEEEe--cCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCC---c---EEEEecCCCcEEEE
Q 036585 174 SDANVVKFS--NDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG---M---FVISGSGDGSVHAW 245 (304)
Q Consensus 174 ~~v~~~~~~--~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~---~---~l~~~~~dg~i~v~ 245 (304)
..+..++++ ...+++|+++....|.||-...............+...|.+++|-++. . +|++++-.|.+.+|
T Consensus 164 ~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~ 243 (717)
T PF08728_consen 164 ASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTF 243 (717)
T ss_pred CceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEE
Confidence 366778888 788889999888888887654421111111111256678889988743 2 78889999999998
Q ss_pred ec
Q 036585 246 SV 247 (304)
Q Consensus 246 d~ 247 (304)
++
T Consensus 244 ~I 245 (717)
T PF08728_consen 244 KI 245 (717)
T ss_pred EE
Confidence 87
No 425
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=96.17 E-value=0.065 Score=40.20 Aligned_cols=76 Identities=13% Similarity=0.116 Sum_probs=53.7
Q ss_pred eecceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeee-------c-------ccccceeEEEEccCCCeEEEEecCC
Q 036585 14 LELSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTI-------N-------SKKYGVDLVCFTSHPTTVIYSSKNG 79 (304)
Q Consensus 14 ~~~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~-------~-------~~~~~v~~~~~~~~~~~l~~~~~~~ 79 (304)
+.....++.....+++|++-+.+|.+++||+.+++.+..- . .....|..+.++.+|.-+++-+
T Consensus 9 i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls--- 85 (219)
T PF07569_consen 9 IVLGSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS--- 85 (219)
T ss_pred EecCCceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe---
Confidence 3344455666778999999999999999999987764332 1 2345677778887777777665
Q ss_pred CCCceEEEEccCce
Q 036585 80 WDESLRLLSLHDNK 93 (304)
Q Consensus 80 ~d~~i~vwd~~~~~ 93 (304)
+|..+.|+..-+.
T Consensus 86 -ng~~y~y~~~L~~ 98 (219)
T PF07569_consen 86 -NGDSYSYSPDLGC 98 (219)
T ss_pred -CCCEEEeccccce
Confidence 6677888765443
No 426
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.07 E-value=1.1 Score=40.68 Aligned_cols=254 Identities=12% Similarity=0.096 Sum_probs=130.5
Q ss_pred cCcEEEEeeCCCeEEEEecC--Ccceeeee--cccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccc
Q 036585 26 VGIYLVTASDDESIRLYDVT--AATCLKTI--NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGH 101 (304)
Q Consensus 26 ~~~~l~~~~~d~~i~vw~~~--~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~ 101 (304)
|+.+|.++..||.+.-+.+. +++.-..- .-...|+.--.|+..++.-+.+.+ |.-..+|.-+. +.+.+--.-
T Consensus 594 d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~s---drP~viY~~n~-kLv~spls~ 669 (1096)
T KOG1897|consen 594 DIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALS---DRPTVIYSSNG-KLVYSPLSL 669 (1096)
T ss_pred cceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeC---CCCEEEEecCC-cEEEeccch
Confidence 46799999999998766544 44332211 223456666677665554444444 66666666443 322211101
Q ss_pred cccEEEEEEcCC--CCEEEEcccCCeEEEEeCCcceeece--EEEec-cceeEecCCC----------------------
Q 036585 102 HDRVVLLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQGL--LRVQG-RPAAAYDDQG---------------------- 154 (304)
Q Consensus 102 ~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~-~~~~~~~~~~---------------------- 154 (304)
+.--..+.|+.+ +..++++.. +.+++.-+..-+.... +.... ...+++.+..
T Consensus 670 kev~~~c~f~s~a~~d~l~~~~~-~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~ 748 (1096)
T KOG1897|consen 670 KEVNHMCPFNSDAYPDSLASANG-GALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYE 748 (1096)
T ss_pred HHhhhhcccccccCCceEEEecC-CceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcce
Confidence 110011122211 223444433 4455554433222111 11111 1112222111
Q ss_pred --eEEEecCCCeEEEEecCCC-----CCceEEEEecC-CcEEEEee----------CCCeEEEEEcCCCceeEEEEeCCC
Q 036585 155 --LVFGYEKGPLDIFSVGGDI-----SDANVVKFSND-GRLMLLTT----------MEGHIHVLDSFRGTLLSTYNVKPV 216 (304)
Q Consensus 155 --~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~-~~~l~~~~----------~dg~i~~~d~~~~~~~~~~~~~~~ 216 (304)
.+..++.+...+.....-. ..+.+..|..| +.++++|+ ..|.|.+|.....+.+...... .
T Consensus 749 ~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~-~ 827 (1096)
T KOG1897|consen 749 VSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAET-V 827 (1096)
T ss_pred EEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeee-e
Confidence 1223333333333222111 23444557766 77788875 3588999988774444433311 2
Q ss_pred CCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccC
Q 036585 217 SRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPD 288 (304)
Q Consensus 217 ~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~ 288 (304)
-.+.+.++.. -+|+++|.- +..|++|+..+.+.++.-..+..++..+...-.|..++.|.-- +.+-.+.
T Consensus 828 v~Gav~aL~~-fngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~ 898 (1096)
T KOG1897|consen 828 VKGAVYALVE-FNGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYK 898 (1096)
T ss_pred eccceeehhh-hCCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEe
Confidence 3455554432 267766654 4579999998887777667788888888888888888887654 5444443
No 427
>PRK10115 protease 2; Provisional
Probab=96.05 E-value=1 Score=40.36 Aligned_cols=74 Identities=8% Similarity=-0.010 Sum_probs=48.5
Q ss_pred ceeEEEEccCCCeEEEEecCC--CCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccC------CeEEEEe
Q 036585 59 GVDLVCFTSHPTTVIYSSKNG--WDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLD------RTVLLWD 130 (304)
Q Consensus 59 ~v~~~~~~~~~~~l~~~~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd 130 (304)
.+..+.++|++++|+.+...+ ....|++.|+.+++.+........ ..++|.+|++.|+....+ ..|+.++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 467789999999999886531 134588889988764322211221 458999998866665432 3566677
Q ss_pred CCcc
Q 036585 131 QRAE 134 (304)
Q Consensus 131 ~~~~ 134 (304)
+.++
T Consensus 206 lgt~ 209 (686)
T PRK10115 206 IGTP 209 (686)
T ss_pred CCCC
Confidence 7666
No 428
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=96.02 E-value=0.89 Score=39.24 Aligned_cols=239 Identities=13% Similarity=0.109 Sum_probs=121.0
Q ss_pred cccCcEEEEeeCCCeEEEEecCCcc--eeeeeccc-ccceeEEEEccCC-CeEEEEecCCCCCceEEEEccCceeeeecc
Q 036585 24 MEVGIYLVTASDDESIRLYDVTAAT--CLKTINSK-KYGVDLVCFTSHP-TTVIYSSKNGWDESLRLLSLHDNKYSRYFK 99 (304)
Q Consensus 24 ~~~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~-~~~v~~~~~~~~~-~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~ 99 (304)
..++..++.+..+|.+....+.... .....-+. .....++++..++ .+++.|+..| |+.+.-|....-+.+..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~g-ds~l~~~~~~~l~~~~~~~ 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFG-DSQLLQISLSNLEVLDSLP 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS--EEEEEEESESEEEEEEE-
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecC-CcEEEEEeCCCcEEEEecc
Confidence 4557788899999999887776433 12222222 3345666666554 4777777655 7888777755555666665
Q ss_pred cccccEEEEEEcCC----CC------EEEEcc---cCCeEEEEeCCcceeec--e---EEEeccc-eeEecC----CCeE
Q 036585 100 GHHDRVVLLSLCSS----KD------CFISGS---LDRTVLLWDQRAEKCQG--L---LRVQGRP-AAAYDD----QGLV 156 (304)
Q Consensus 100 ~~~~~v~~~~~~~~----~~------~l~~~~---~dg~i~iwd~~~~~~~~--~---~~~~~~~-~~~~~~----~~~~ 156 (304)
.-+||..+.+.+. .. .+++++ .+|.+++.. .+-... . ....+.. ...... +..+
T Consensus 298 -N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~l 374 (504)
T PF10433_consen 298 -NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGLELASSELPGVTGIWTLKLSSSDHSYL 374 (504)
T ss_dssp ----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEE
T ss_pred -CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceeeeeeccCCCCceEEEEeeecCCCceEE
Confidence 4578888888531 11 455543 578888864 222222 1 1122211 111111 2333
Q ss_pred EEecCCCeEEEEec--CCCCCceEE---EEecCCcEEEEeeC---------CCeEEEEEcCCCceeEEEEeCCCCCCcce
Q 036585 157 FGYEKGPLDIFSVG--GDISDANVV---KFSNDGRLMLLTTM---------EGHIHVLDSFRGTLLSTYNVKPVSRNSTL 222 (304)
Q Consensus 157 ~~~~~~~~~~~~~~--~~~~~v~~~---~~~~~~~~l~~~~~---------dg~i~~~d~~~~~~~~~~~~~~~~~~~i~ 222 (304)
+......-.++.+. .....+..+ .|..+.+.|+++.. ...|++.+...++....... .....|.
T Consensus 375 v~S~~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQVt~~~i~l~~~~~~~~~~~w~~--~~~~~I~ 452 (504)
T PF10433_consen 375 VLSFPNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDGRIVQVTPKGIRLIDLEDGKLTQEWKP--PAGSIIV 452 (504)
T ss_dssp EEEESSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEETTTEEEEEESSEEEEEESSSTSEEEEEE---TTS---S
T ss_pred EEEcCCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCCCeEEEEecCeEEEEECCCCeEEEEEeC--CCCCeEE
Confidence 43334445555554 222333222 45555666666554 23478888777777766653 2455666
Q ss_pred EEEEcCCCcEEEEecCCCcEEEEecCCCceeeeee-----ccCCCCceEEeCC
Q 036585 223 EASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWM-----SFDTEPPVIKWAP 270 (304)
Q Consensus 223 ~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-----~~~~~i~~~~~~~ 270 (304)
+.+.+ +.+++.+-.++.+..+.+.......... .....|.|+..+|
T Consensus 453 ~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 453 AASIN--DPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp EEEES--SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEEEC--CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 66654 3456666668889999887665532221 2467788887766
No 429
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.00 E-value=0.044 Score=28.61 Aligned_cols=30 Identities=23% Similarity=0.470 Sum_probs=25.6
Q ss_pred CceEEEEecCC---cEEEEeeCCCeEEEEEcCC
Q 036585 175 DANVVKFSNDG---RLMLLTTMEGHIHVLDSFR 204 (304)
Q Consensus 175 ~v~~~~~~~~~---~~l~~~~~dg~i~~~d~~~ 204 (304)
.+.+++|+|.. .+|+.+-..|.|.++|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 57889999854 5888888899999999985
No 430
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.97 E-value=1.2 Score=40.33 Aligned_cols=202 Identities=13% Similarity=0.099 Sum_probs=108.3
Q ss_pred CCeEEEEecCCCCCceEEEEccCceeeeeccccccc--------EEEEEEcC----------------CCCEEEEcccCC
Q 036585 69 PTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDR--------VVLLSLCS----------------SKDCFISGSLDR 124 (304)
Q Consensus 69 ~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~--------v~~~~~~~----------------~~~~l~~~~~dg 124 (304)
+..++.++. ++.|.-.|..+|+.+-.+...... ...+.+.. .+..++.++.|+
T Consensus 194 gg~lYv~t~---~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg 270 (764)
T TIGR03074 194 GDTLYLCTP---HNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDA 270 (764)
T ss_pred CCEEEEECC---CCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCC
Confidence 556777776 888998999998877665422110 11222221 234778888899
Q ss_pred eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEec--CCcEEEEeeC---------
Q 036585 125 TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSN--DGRLMLLTTM--------- 193 (304)
Q Consensus 125 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~--------- 193 (304)
.+.-.|.++++....+...+....... +......-..+.-.| .+..+++|+.
T Consensus 271 ~LiALDA~TGk~~W~fg~~G~vdl~~~-----------------~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~ 333 (764)
T TIGR03074 271 RLIALDADTGKLCEDFGNNGTVDLTAG-----------------MGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDE 333 (764)
T ss_pred eEEEEECCCCCEEEEecCCCceeeecc-----------------cCcCCCcccccccCCEEECCEEEEEecccccccccC
Confidence 999999999988776543221100000 000000000011111 1234555532
Q ss_pred -CCeEEEEEcCCCceeEEEEeCCCC------CC--------cc-eEEEEcCCCcEEEEec------------------CC
Q 036585 194 -EGHIHVLDSFRGTLLSTYNVKPVS------RN--------ST-LEASFSPEGMFVISGS------------------GD 239 (304)
Q Consensus 194 -dg~i~~~d~~~~~~~~~~~~~~~~------~~--------~i-~~~~~s~~~~~l~~~~------------------~d 239 (304)
+|.|+-+|.++|+.+..+...... .+ .+ ..++++|+...++.+. ..
T Consensus 334 ~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~ 413 (764)
T TIGR03074 334 PSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYS 413 (764)
T ss_pred CCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCccccc
Confidence 688999999999998887632100 00 11 2345666555555432 12
Q ss_pred CcEEEEecCCCceeeeeeccCCCCc---------eEEeCC-CCc---EEEEecCceEEeccCCc
Q 036585 240 GSVHAWSVRSGKEVASWMSFDTEPP---------VIKWAP-GSL---MFVTGSSELSFWIPDLS 290 (304)
Q Consensus 240 g~i~v~d~~~~~~~~~~~~~~~~i~---------~~~~~~-~~~---~l~s~~~d~~iw~~~~~ 290 (304)
+.|.-.|.++|+..-.++.....+. =+.+.. +|+ .++.++.+..+|.++.+
T Consensus 414 ~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~ 477 (764)
T TIGR03074 414 SSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRR 477 (764)
T ss_pred ceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECC
Confidence 4577778888888766643221111 112222 553 67777777666665543
No 431
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=95.97 E-value=0.43 Score=35.20 Aligned_cols=163 Identities=11% Similarity=0.102 Sum_probs=85.0
Q ss_pred CeEEEEecCCCCCceEEEEccC--ceeeeecccccccEEEEEEcCCCCEEEEcccC---C---eEEEE-eCCcc----ee
Q 036585 70 TTVIYSSKNGWDESLRLLSLHD--NKYSRYFKGHHDRVVLLSLCSSKDCFISGSLD---R---TVLLW-DQRAE----KC 136 (304)
Q Consensus 70 ~~l~~~~~~~~d~~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g---~i~iw-d~~~~----~~ 136 (304)
+.|+.+.. ...|.+|++.+ .+....+.. -+.|..+.++..|+++++--.+ . .+|+| |.+.. ++
T Consensus 29 d~Lfva~~---g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~ 104 (215)
T PF14761_consen 29 DALFVAAS---GCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSP 104 (215)
T ss_pred ceEEEEcC---CCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence 44444444 77899999983 345566663 4789999999999999996432 2 56665 22222 11
Q ss_pred eceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCce-eEEE---E
Q 036585 137 QGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL-LSTY---N 212 (304)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~---~ 212 (304)
... +.-+...- ..........+.+..+.- ...+.+++..|-..-|++|+. +++.+|.+..... ...+ .
T Consensus 105 v~v-RiaG~~v~-----~~~~~~~~~qleiiElPl-~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~~~~~~~~~lD 176 (215)
T PF14761_consen 105 VRV-RIAGHRVT-----PSFNESSKDQLEIIELPL-SEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQTIQSEKFSFLD 176 (215)
T ss_pred EEE-EEcccccc-----cCCCCccccceEEEEecC-CCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEEEecccccEEe
Confidence 111 11110000 000000112344444443 456778888885444666654 4888998764433 1111 1
Q ss_pred eC-----CCCCCcceEEEEcCCCcEEEEecCCCcEEEEec
Q 036585 213 VK-----PVSRNSTLEASFSPEGMFVISGSGDGSVHAWSV 247 (304)
Q Consensus 213 ~~-----~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~ 247 (304)
.. .........+++ -+.|+|..+ +-.++++.+
T Consensus 177 Fe~~l~~~~~~~~p~~v~i--c~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 177 FERSLIDHIDNFKPTQVAI--CEGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred chhhhhheecCceEEEEEE--EeeEEEEec-CCEEEEEEE
Confidence 00 001122344455 345777775 445776654
No 432
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.91 E-value=0.1 Score=47.58 Aligned_cols=109 Identities=12% Similarity=0.059 Sum_probs=69.3
Q ss_pred eEeecccCcEEEE--eeCCCeEEEEecCCcce-----eeeeccc------ccceeEEEEccCCCe-EEEEecCCCCCceE
Q 036585 20 ILQSMEVGIYLVT--ASDDESIRLYDVTAATC-----LKTINSK------KYGVDLVCFTSHPTT-VIYSSKNGWDESLR 85 (304)
Q Consensus 20 ~i~~~~~~~~l~~--~~~d~~i~vw~~~~~~~-----~~~~~~~------~~~v~~~~~~~~~~~-l~~~~~~~~d~~i~ 85 (304)
.+.+.+|+...++ .+.+-.|..||+++-.. ..-|..| .....++.|+|.-.. .+.... |+.|+
T Consensus 105 ~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~---dlsl~ 181 (1405)
T KOG3630|consen 105 IFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLS---DLSLR 181 (1405)
T ss_pred EEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhcc---ccchh
Confidence 3456667654433 33444788899875321 1112222 234567888886543 333344 89999
Q ss_pred EEEccCcee-eeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCC
Q 036585 86 LLSLHDNKY-SRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQR 132 (304)
Q Consensus 86 vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 132 (304)
+..+..... +..+. .....++++|+|.|+.++.|-..|++.-|...
T Consensus 182 V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred hhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecc
Confidence 887754332 22332 56678999999999999999999999888654
No 433
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=95.87 E-value=0.73 Score=37.14 Aligned_cols=160 Identities=12% Similarity=0.096 Sum_probs=89.6
Q ss_pred cceeEEEEccCCCeEEEEecCCCCCc------eEEEEccC--c--eee-----eecccccc--------cEEEEEEcCCC
Q 036585 58 YGVDLVCFTSHPTTVIYSSKNGWDES------LRLLSLHD--N--KYS-----RYFKGHHD--------RVVLLSLCSSK 114 (304)
Q Consensus 58 ~~v~~~~~~~~~~~l~~~~~~~~d~~------i~vwd~~~--~--~~~-----~~~~~~~~--------~v~~~~~~~~~ 114 (304)
+....+.+.+++..+++.+. ++. +..+++.. + ..+ ..+....+ ...++++.+++
T Consensus 20 GGlSgl~~~~~~~~~~avSD---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g 96 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSD---RGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG 96 (326)
T ss_pred CcEeeEEEeCCCCEEEEEEC---CCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC
Confidence 56788888876667777776 555 55454443 1 111 11111111 34477887788
Q ss_pred CEEEEcccC------CeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEE
Q 036585 115 DCFISGSLD------RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLM 188 (304)
Q Consensus 115 ~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 188 (304)
.++++.-.+ ..|+.++.. ++....+..+.......... .-.........++++|+|+.|
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~--------------~~~~~N~G~E~la~~~dG~~l 161 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGT--------------SGRRNNRGFEGLAVSPDGRTL 161 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCcc--------------ccccCCCCeEEEEECCCCCEE
Confidence 888887777 778888866 55555543322110000000 001244678899999999966
Q ss_pred EEeeC-----CC-----------eEEEEEcCC-CceeEEEEeCCC------CCCcceEEEEcCCCcEEEE
Q 036585 189 LLTTM-----EG-----------HIHVLDSFR-GTLLSTYNVKPV------SRNSTLEASFSPEGMFVIS 235 (304)
Q Consensus 189 ~~~~~-----dg-----------~i~~~d~~~-~~~~~~~~~~~~------~~~~i~~~~~s~~~~~l~~ 235 (304)
+++.+ |+ .|..||..+ ++....+..... ....+..+.+-+++++|+.
T Consensus 162 ~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 162 FAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred EEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 66543 22 244455554 333444332212 3567888999999987664
No 434
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.87 E-value=0.054 Score=28.30 Aligned_cols=31 Identities=16% Similarity=0.130 Sum_probs=26.1
Q ss_pred ccEEEEEEcCCC---CEEEEcccCCeEEEEeCCc
Q 036585 103 DRVVLLSLCSSK---DCFISGSLDRTVLLWDQRA 133 (304)
Q Consensus 103 ~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~ 133 (304)
+.|.++.|+|++ .+|+.+-..|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468899999844 4888888889999999995
No 435
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.77 E-value=0.75 Score=40.66 Aligned_cols=110 Identities=11% Similarity=0.106 Sum_probs=67.3
Q ss_pred CceEEEEec--CCcEEEEeeCCCeEEEEEcCC-------C----c---------eeEEEEeCCCCCCcceEEEEc--CCC
Q 036585 175 DANVVKFSN--DGRLMLLTTMEGHIHVLDSFR-------G----T---------LLSTYNVKPVSRNSTLEASFS--PEG 230 (304)
Q Consensus 175 ~v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~-------~----~---------~~~~~~~~~~~~~~i~~~~~s--~~~ 230 (304)
.|+.+.... +...|+++..||.|.+|.+++ . . +...+. .....++++++ ...
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~----v~~SaWGLdIh~~~~~ 177 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR----VGASAWGLDIHDYKKS 177 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee----cCCceeEEEEEecCcc
Confidence 345454433 456788999999999997521 1 0 111111 34578889998 778
Q ss_pred cEEEEecCCCcEEEEecCCC--ce-eeeeeccCCCCceEEeCCCC-----c-EEEEecCceEEeccC
Q 036585 231 MFVISGSGDGSVHAWSVRSG--KE-VASWMSFDTEPPVIKWAPGS-----L-MFVTGSSELSFWIPD 288 (304)
Q Consensus 231 ~~l~~~~~dg~i~v~d~~~~--~~-~~~~~~~~~~i~~~~~~~~~-----~-~l~s~~~d~~iw~~~ 288 (304)
++||+++....|.||-.... +. ...-..+...|.+|+|-++. . .+++++-...+|.++
T Consensus 178 rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 178 RLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred eEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence 88888888888888765432 11 11112366779999998754 2 555555544444433
No 436
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.73 E-value=1.3 Score=38.96 Aligned_cols=186 Identities=13% Similarity=0.176 Sum_probs=91.4
Q ss_pred CCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeece-E--EEec--cceeEecCCCe
Q 036585 81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL-L--RVQG--RPAAAYDDQGL 155 (304)
Q Consensus 81 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~--~~~~--~~~~~~~~~~~ 155 (304)
--.|+|++.. |+.+..+.-..+.+..+.|+.+. .|++...+|++++|++-....... . .... .....+-.+|.
T Consensus 63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred ceeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCce
Confidence 4568888865 55555444333478889999665 677778999999999753322210 0 1111 11111122333
Q ss_pred EEEecCCCe---------EEEEecC---CCCCceEEEEecCCcE---EE-EeeCCCeEEEEEcCCCc-eeEEEEeCCCCC
Q 036585 156 VFGYEKGPL---------DIFSVGG---DISDANVVKFSNDGRL---ML-LTTMEGHIHVLDSFRGT-LLSTYNVKPVSR 218 (304)
Q Consensus 156 ~~~~~~~~~---------~~~~~~~---~~~~v~~~~~~~~~~~---l~-~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~ 218 (304)
.+-..++.+ .++.+.. ..-+-++-...+++.. ++ +.-..+ ..++...... ....+. ...
T Consensus 141 avlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~---~~~ 216 (829)
T KOG2280|consen 141 AVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALS---WPN 216 (829)
T ss_pred EEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccC---CCC
Confidence 333333332 2222221 1111122222222211 11 000000 0111111111 111111 123
Q ss_pred CcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeee--ccCCCCceEEeCCCCc
Q 036585 219 NSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWM--SFDTEPPVIKWAPGSL 273 (304)
Q Consensus 219 ~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~ 273 (304)
..+..+..||+.++|+--...|.|.+-+....+.+..+. .| .+...++|..+..
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~-~~p~qm~Wcgnda 272 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDH-DPPKQMAWCGNDA 272 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCC-CchHhceeecCCc
Confidence 567778999999999999999999998887666655553 22 2334666665543
No 437
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.67 E-value=0.4 Score=40.08 Aligned_cols=146 Identities=12% Similarity=0.148 Sum_probs=84.7
Q ss_pred ccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCC-------EEEEcccCCeEEEEeCCcceeec
Q 036585 66 TSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKD-------CFISGSLDRTVLLWDQRAEKCQG 138 (304)
Q Consensus 66 ~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~iwd~~~~~~~~ 138 (304)
..+.+.++.-+.. ...++-.|++-|+.+.....|... -+.|.|..+ .-+.|-.+..|.-.|.+-....
T Consensus 476 ~~dssli~~dg~~--~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNK- 550 (776)
T COG5167 476 DNDSSLIYLDGGE--RDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNK- 550 (776)
T ss_pred cCCcceEEecCCC--cccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCc-
Confidence 3444555444432 677888899999999888877654 466776432 1223333444444465533211
Q ss_pred eEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEe----cCCcEEEEeeCCCeEEEEEcCCCceeEEEEeC
Q 036585 139 LLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFS----NDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK 214 (304)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 214 (304)
+... .....++.-.|+ ....++++++..|.|++||--..+....+.
T Consensus 551 -i~v~---------------------------esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP-- 600 (776)
T COG5167 551 -IKVV---------------------------ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALP-- 600 (776)
T ss_pred -eeee---------------------------eehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCc--
Confidence 1000 000111112222 234589999999999999943322222222
Q ss_pred CCCCCcceEEEEcCCCcEEEEecCCCcEEEEecC
Q 036585 215 PVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVR 248 (304)
Q Consensus 215 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~ 248 (304)
+....|..+..+.+|+++++.+. ..+.+-|++
T Consensus 601 -~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 601 -GLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred -ccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 56678888999999999887764 467777764
No 438
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.51 E-value=0.15 Score=38.23 Aligned_cols=68 Identities=18% Similarity=0.229 Sum_probs=50.3
Q ss_pred EEecCCcEEEEeeCCCeEEEEEcCCCceeEEEE----eCC-------CCCCcceEEEEcCCCcEEEEecCCCcEEEEecC
Q 036585 180 KFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN----VKP-------VSRNSTLEASFSPEGMFVISGSGDGSVHAWSVR 248 (304)
Q Consensus 180 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~----~~~-------~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~ 248 (304)
.+..++.++++-+.+|.+++||+.+++....-. ... .....|..+.++.+|.-+++-+ +|..+.|+..
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 355678899999999999999999887654431 000 2456788888998887777664 5788999864
No 439
>PHA02790 Kelch-like protein; Provisional
Probab=95.37 E-value=1.5 Score=37.61 Aligned_cols=105 Identities=9% Similarity=0.066 Sum_probs=52.4
Q ss_pred ccCcEEEEeeCC--CeEEEEecCCcce--eeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee--c
Q 036585 25 EVGIYLVTASDD--ESIRLYDVTAATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY--F 98 (304)
Q Consensus 25 ~~~~~l~~~~~d--~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~--~ 98 (304)
.+|...+.|+.+ .++..||..+++- +..+....... ....-+++..+.|+..+....+..||..+++-... +
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~--~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m 394 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNP--AVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST 394 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCccc--EEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC
Confidence 356777778754 3577788765432 22222111111 12223677777777532234577888877653321 1
Q ss_pred ccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCccee
Q 036585 99 KGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKC 136 (304)
Q Consensus 99 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 136 (304)
.........+ .-++...+.|+ .+.+||.++.+-
T Consensus 395 ~~~r~~~~~~--~~~~~IYv~GG---~~e~ydp~~~~W 427 (480)
T PHA02790 395 YYPHYKSCAL--VFGRRLFLVGR---NAEFYCESSNTW 427 (480)
T ss_pred CCccccceEE--EECCEEEEECC---ceEEecCCCCcE
Confidence 1111111112 22455556553 467788766544
No 440
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.28 E-value=0.0026 Score=51.80 Aligned_cols=112 Identities=9% Similarity=0.121 Sum_probs=76.4
Q ss_pred eecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc--
Q 036585 22 QSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK-- 99 (304)
Q Consensus 22 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~-- 99 (304)
.+-+.+.-++.++.+..+..||- .++....+. .++....++|..++..++..... .+.+.+||+.+....+.-.
T Consensus 41 ~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek--~~piylwd~n~eytqqLE~gg 116 (615)
T KOG2247|consen 41 RWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEK--TGPIYLWDVNSEYTQQLESGG 116 (615)
T ss_pred eEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhc--CCCeeechhhhhhHHHHhccC
Confidence 34455555888888888888884 344444333 33456778998888887777654 8999999998643211111
Q ss_pred cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeece
Q 036585 100 GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL 139 (304)
Q Consensus 100 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 139 (304)
.|+... +.|++....++.+...|.+.+++..+.+....
T Consensus 117 ~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv 154 (615)
T KOG2247|consen 117 TSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIV 154 (615)
T ss_pred cchHHH--HhhccCCccccccccccceEEEeccchhhhhh
Confidence 133332 78999888999999999999999877655433
No 441
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=95.23 E-value=0.57 Score=31.64 Aligned_cols=108 Identities=12% Similarity=0.109 Sum_probs=67.3
Q ss_pred EEEecCCcEEEEeeCCCeEEEEEcCCC--------ceeEEEEeCCCCCCcceEEEEcC-----CCcEEEEecCCCcEEEE
Q 036585 179 VKFSNDGRLMLLTTMEGHIHVLDSFRG--------TLLSTYNVKPVSRNSTLEASFSP-----EGMFVISGSGDGSVHAW 245 (304)
Q Consensus 179 ~~~~~~~~~l~~~~~dg~i~~~d~~~~--------~~~~~~~~~~~~~~~i~~~~~s~-----~~~~l~~~~~dg~i~v~ 245 (304)
-+|......|++++..|+|.+++.... ..+..+. -...|++++-.+ +...|+.|+ ...+..|
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN----in~~italaaG~l~~~~~~D~LliGt-~t~llaY 78 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN----INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAY 78 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE----CCCceEEEEEEecCCCCCcCEEEEec-cceEEEE
Confidence 456666667888999999999986532 2334444 455666665333 345677776 4569999
Q ss_pred ecCCCceeeeeeccCCCCceEEeCC----CCcEEEEecCc-eEEeccCCccc
Q 036585 246 SVRSGKEVASWMSFDTEPPVIKWAP----GSLMFVTGSSE-LSFWIPDLSKL 292 (304)
Q Consensus 246 d~~~~~~~~~~~~~~~~i~~~~~~~----~~~~l~s~~~d-~~iw~~~~~~~ 292 (304)
|+.+..-+..- .-...++++.+-. +..+++.|+.- +.-++.+.+.+
T Consensus 79 DV~~N~d~Fyk-e~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 79 DVENNSDLFYK-EVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred EcccCchhhhh-hCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence 99776543322 2345677777632 34566666655 77777766543
No 442
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.20 E-value=0.29 Score=40.24 Aligned_cols=121 Identities=9% Similarity=0.080 Sum_probs=69.9
Q ss_pred eEEEEecCCcEEEEeeCCCeEEEEEcCCCc--eeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceee
Q 036585 177 NVVKFSNDGRLMLLTTMEGHIHVLDSFRGT--LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVA 254 (304)
Q Consensus 177 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~ 254 (304)
+.+-|...++.+++ ...|.+.=|-+.... ....+. ....++|.++.||+|.+.||.--.+++|.+++....+...
T Consensus 26 ngvFfDDaNkqlfa-vrSggatgvvvkgpndDVpiSfd--m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 26 NGVFFDDANKQLFA-VRSGGATGVVVKGPNDDVPISFD--MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred cceeeccCcceEEE-EecCCeeEEEEeCCCCCCCceee--ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence 34555544444433 333444445443222 122222 1356799999999999999999999999999984433322
Q ss_pred ee----eccCCCCceEEeCCCCcEEEEecCceEEeccC--CccccccccCCC
Q 036585 255 SW----MSFDTEPPVIKWAPGSLMFVTGSSELSFWIPD--LSKLGAYVGRNR 300 (304)
Q Consensus 255 ~~----~~~~~~i~~~~~~~~~~~l~s~~~d~~iw~~~--~~~~~~~~~~~~ 300 (304)
.+ +.....|.+..|+......+.....+.+|... .+.++....++.
T Consensus 103 ~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~ 154 (657)
T KOG2377|consen 103 EYTQECKTKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNL 154 (657)
T ss_pred HHHHHhccCcceeEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhccc
Confidence 22 33345588889987744444333346666543 344444444443
No 443
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=95.20 E-value=0.99 Score=40.03 Aligned_cols=110 Identities=6% Similarity=0.132 Sum_probs=63.1
Q ss_pred eEEEEecCCcEEEEeeCCC-----eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCc
Q 036585 177 NVVKFSNDGRLMLLTTMEG-----HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGK 251 (304)
Q Consensus 177 ~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~ 251 (304)
..+.|-|+|..+++-..|| .|.++. ++|-.-..+....+........+|+-....++.+ ..+.|.+|-.++..
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfE-rNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyh 327 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFE-RNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYH 327 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEc-cCCcccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceE
Confidence 3488999999999866554 355665 2332222222222344456667777666555544 45679999887654
Q ss_pred eeeeeeccCCCCceEEeCCCC--cEEEEecCceEEeccC
Q 036585 252 EVASWMSFDTEPPVIKWAPGS--LMFVTGSSELSFWIPD 288 (304)
Q Consensus 252 ~~~~~~~~~~~i~~~~~~~~~--~~l~s~~~d~~iw~~~ 288 (304)
-.-...-.-..+.-+.|+|.. ..+++++..|..-.++
T Consensus 328 WYLK~e~~ip~~s~vkwhpe~~nTl~f~d~~~I~~V~f~ 366 (1243)
T COG5290 328 WYLKVERQIPGISYVKWHPEEKNTLLFRDGERILRVFFS 366 (1243)
T ss_pred EEEEEeecCCCcceeeeccccCcEEEEecCCeEEEEEee
Confidence 322222234456778999954 4555555554433333
No 444
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=95.15 E-value=0.15 Score=26.42 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=29.2
Q ss_pred CCCcEEEEec-CCCcEEEEecCCCceeeeeeccCCCCceEEeC
Q 036585 228 PEGMFVISGS-GDGSVHAWSVRSGKEVASWMSFDTEPPVIKWA 269 (304)
Q Consensus 228 ~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~ 269 (304)
|++++|+++. .++.|.++|..+++.+..+.. ......++|+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEeC
Confidence 5777777665 578899999998888887765 3444555553
No 445
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.08 E-value=0.51 Score=39.09 Aligned_cols=87 Identities=13% Similarity=0.193 Sum_probs=58.5
Q ss_pred ecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccccccc-EEEEEEcCC-C---------------C
Q 036585 53 INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDR-VVLLSLCSS-K---------------D 115 (304)
Q Consensus 53 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~-~---------------~ 115 (304)
+......+.+++.+|.+++.++... -|.|.++|+.++..++.+++-.+. +.-+..... . .
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDs---lGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~ 379 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDS---LGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFA 379 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcC---CCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcce
Confidence 3344456889999999887777655 899999999999888888765442 111111111 0 1
Q ss_pred --EEEEcccCCeEEEEeCCcceeeceEEE
Q 036585 116 --CFISGSLDRTVLLWDQRAEKCQGLLRV 142 (304)
Q Consensus 116 --~l~~~~~dg~i~iwd~~~~~~~~~~~~ 142 (304)
+++-+-..|.|-||.++++..+..+..
T Consensus 380 l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 380 LFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 234456778899999988877766654
No 446
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.05 E-value=0.0032 Score=51.30 Aligned_cols=144 Identities=10% Similarity=0.116 Sum_probs=96.8
Q ss_pred cEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEec
Q 036585 104 RVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSN 183 (304)
Q Consensus 104 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 183 (304)
......|.|.+.-++.++.+..+..||-..... .... .++....++|..
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~-le~n------------------------------~tg~aldm~wDk 84 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDKAGQVI-LELN------------------------------PTGKALDMAWDK 84 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhhhccee-cccC------------------------------CchhHhhhhhcc
Confidence 344567788777788888888888888443222 1111 123445577777
Q ss_pred CCcEEE-EeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCC
Q 036585 184 DGRLML-LTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTE 262 (304)
Q Consensus 184 ~~~~l~-~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~ 262 (304)
++..++ .+-..+.+.+||+.+.. ...+.. +....-.-+.|++....++.+...|.+.|++..+.+.+...-.|..+
T Consensus 85 egdvlavlAek~~piylwd~n~ey-tqqLE~--gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RR 161 (615)
T KOG2247|consen 85 EGDVLAVLAEKTGPIYLWDVNSEY-TQQLES--GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRR 161 (615)
T ss_pred ccchhhhhhhcCCCeeechhhhhh-HHHHhc--cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccc
Confidence 766544 45677899999986532 222221 11122222789999999999999999999999887776666559999
Q ss_pred CceEEeCCCCcEEEEecCc
Q 036585 263 PPVIKWAPGSLMFVTGSSE 281 (304)
Q Consensus 263 i~~~~~~~~~~~l~s~~~d 281 (304)
+++++|.+.+..+...+..
T Consensus 162 gtq~av~lEd~vil~dcd~ 180 (615)
T KOG2247|consen 162 GTQIAVTLEDYVILCDCDN 180 (615)
T ss_pred eeEEEecccceeeecCcHH
Confidence 9999999988666554433
No 447
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.03 E-value=1.9 Score=38.76 Aligned_cols=76 Identities=16% Similarity=0.236 Sum_probs=52.0
Q ss_pred CCceEEEEecCCcEEEEeeCCCeEEEEEcC----------CCce---eEEEEe-----CCCCCCcceEEEEcCC---CcE
Q 036585 174 SDANVVKFSNDGRLMLLTTMEGHIHVLDSF----------RGTL---LSTYNV-----KPVSRNSTLEASFSPE---GMF 232 (304)
Q Consensus 174 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~----------~~~~---~~~~~~-----~~~~~~~i~~~~~s~~---~~~ 232 (304)
-.|..+.++|+|.+++..+..|-. |..+. .|+. .+++.. .......|..+.|+|. +.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 467889999999999988886643 33332 1111 112211 1124457889999995 578
Q ss_pred EEEecCCCcEEEEecCCC
Q 036585 233 VISGSGDGSVHAWSVRSG 250 (304)
Q Consensus 233 l~~~~~dg~i~v~d~~~~ 250 (304)
|+.-..|+.+|+||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 888889999999999754
No 448
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=94.77 E-value=0.19 Score=41.25 Aligned_cols=168 Identities=15% Similarity=0.139 Sum_probs=95.9
Q ss_pred ecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceee-eec-ccccc----cEE-EEEEcCCCCEEEEcccCCe
Q 036585 53 INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYS-RYF-KGHHD----RVV-LLSLCSSKDCFISGSLDRT 125 (304)
Q Consensus 53 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~-~~~-~~~~~----~v~-~~~~~~~~~~l~~~~~dg~ 125 (304)
+......+..+-..|+++.+..-+ ...+.++++.+.... +.+ ....+ .|+ .+..-..|.-++.+..||.
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~----g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~ 291 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRT----GSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGL 291 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEec----CCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCc
Confidence 444456788889999999988887 567888887654321 111 11011 122 1122234556778888888
Q ss_pred EEEE-eCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCC
Q 036585 126 VLLW-DQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR 204 (304)
Q Consensus 126 i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 204 (304)
|.-| |.+.+.. ..+... +.+. -....+..+.-..+.+-+++-+.+|++.++....
T Consensus 292 vsQWFdvr~~~~-p~l~h~---------------------R~f~--l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~ 347 (733)
T COG4590 292 VSQWFDVRRDGQ-PHLNHI---------------------RNFK--LAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTS 347 (733)
T ss_pred eeeeeeeecCCC-Ccceee---------------------eccc--cCcccceeeccccccceEEEEcCCCceeeeeccc
Confidence 8777 4443322 111110 0010 1112333333334456677777888888877544
Q ss_pred CceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCcee
Q 036585 205 GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEV 253 (304)
Q Consensus 205 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~ 253 (304)
.+.+-.-. .-..+.-+++||.+.++++-. .|.|+++.+++..+-
T Consensus 348 ~~~lL~~~----~~~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~Pe 391 (733)
T COG4590 348 EKLLLFER----AYQAPQLVAMSPNQAYLLSED-QGKIRLAQLENRNPE 391 (733)
T ss_pred Ccceehhh----hhcCcceeeeCcccchheeec-CCceEEEEecCCCCC
Confidence 43332221 223455689999999998764 567999998876553
No 449
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=94.73 E-value=0.97 Score=34.46 Aligned_cols=151 Identities=12% Similarity=0.077 Sum_probs=76.2
Q ss_pred EEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccc------ccccEEEEEEcC
Q 036585 39 IRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKG------HHDRVVLLSLCS 112 (304)
Q Consensus 39 i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~------~~~~v~~~~~~~ 112 (304)
-.+||+.+++....-....--...-.+-+||+.+.+|+.......+++++..+......... ....--...-.|
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 45788887664322111222233345778999999998743356688888654111111111 111222344457
Q ss_pred CCCEEEEcccCC-eEEEEeCCcc-eeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEE
Q 036585 113 SKDCFISGSLDR-TVLLWDQRAE-KCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLL 190 (304)
Q Consensus 113 ~~~~l~~~~~dg-~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 190 (304)
||+.|+.|+... +.-+|.-+.. .....+....... + .....----+...|+|+.|+.
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~--------------------~-~~~~nlYP~~~llPdG~lFi~ 186 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTS--------------------D-TLPNNLYPFVHLLPDGNLFIF 186 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhh--------------------c-cCccccCceEEEcCCCCEEEE
Confidence 899888887763 2233332111 0000000000000 0 000111224667899999988
Q ss_pred eeCCCeEEEEEcCCCceeEEEE
Q 036585 191 TTMEGHIHVLDSFRGTLLSTYN 212 (304)
Q Consensus 191 ~~~dg~i~~~d~~~~~~~~~~~ 212 (304)
+..++ .+||..+.+.++.+.
T Consensus 187 an~~s--~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 187 ANRGS--IIYDYKTNTVVRTLP 206 (243)
T ss_pred EcCCc--EEEeCCCCeEEeeCC
Confidence 88764 467888777666655
No 450
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.69 E-value=1.9 Score=34.90 Aligned_cols=26 Identities=4% Similarity=0.087 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCEEEEcccCCeEEEEe
Q 036585 104 RVVLLSLCSSKDCFISGSLDRTVLLWD 130 (304)
Q Consensus 104 ~v~~~~~~~~~~~l~~~~~dg~i~iwd 130 (304)
..++|+|.|+++++++ ...|.|++++
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~ 28 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD 28 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe
Confidence 3578999999977665 5589999999
No 451
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=94.65 E-value=2.3 Score=35.80 Aligned_cols=33 Identities=6% Similarity=0.076 Sum_probs=24.7
Q ss_pred cccEEEEEEcCCCCEEEEcccCCeEEEEeCCcc
Q 036585 102 HDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAE 134 (304)
Q Consensus 102 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 134 (304)
-...+.++|.|++++|++--..|.|++++..+.
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~ 61 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETG 61 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence 345688999999977766544699999876544
No 452
>PLN02193 nitrile-specifier protein
Probab=94.64 E-value=2.5 Score=36.11 Aligned_cols=66 Identities=15% Similarity=0.227 Sum_probs=36.9
Q ss_pred CCcEEEEeeCC----CeEEEEEcCCCceeEEEEe--CCCCCCcceEEEEcCCCcEEEEecCC--------------CcEE
Q 036585 184 DGRLMLLTTME----GHIHVLDSFRGTLLSTYNV--KPVSRNSTLEASFSPEGMFVISGSGD--------------GSVH 243 (304)
Q Consensus 184 ~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~d--------------g~i~ 243 (304)
+++.++.++.+ ..+.+||+.+.+....-.. .+.......++ .-++++++.|+.. +.+.
T Consensus 328 ~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~ 405 (470)
T PLN02193 328 QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA--AVGKHIVIFGGEIAMDPLAHVGPGQLTDGTF 405 (470)
T ss_pred CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE--EECCEEEEECCccCCccccccCccceeccEE
Confidence 56666666654 4689999988765433221 01111112222 2366777777743 2478
Q ss_pred EEecCCCc
Q 036585 244 AWSVRSGK 251 (304)
Q Consensus 244 v~d~~~~~ 251 (304)
+||+.+.+
T Consensus 406 ~~D~~t~~ 413 (470)
T PLN02193 406 ALDTETLQ 413 (470)
T ss_pred EEEcCcCE
Confidence 88887654
No 453
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.48 E-value=1.4 Score=37.21 Aligned_cols=79 Identities=14% Similarity=0.173 Sum_probs=51.4
Q ss_pred CceEEEEecCCcEEEEeeCCCeEEEEE---------cCCCceeEEEEeC--------CCCCCcceEEEEcCCC---cEEE
Q 036585 175 DANVVKFSNDGRLMLLTTMEGHIHVLD---------SFRGTLLSTYNVK--------PVSRNSTLEASFSPEG---MFVI 234 (304)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~~dg~i~~~d---------~~~~~~~~~~~~~--------~~~~~~i~~~~~s~~~---~~l~ 234 (304)
.|..+..++.|..++..+.+|.+.++= .++|+........ ....-.+..++|+|+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 466788899999999988888655542 1234322221110 0122346678999975 5677
Q ss_pred EecCCCcEEEEecCCCcee
Q 036585 235 SGSGDGSVHAWSVRSGKEV 253 (304)
Q Consensus 235 ~~~~dg~i~v~d~~~~~~~ 253 (304)
.-+.|+.||+||+.....+
T Consensus 185 iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEecCcEEEEEecCCcchh
Confidence 7778999999999776544
No 454
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.23 E-value=0.13 Score=45.80 Aligned_cols=171 Identities=12% Similarity=0.109 Sum_probs=87.5
Q ss_pred cccccceeEEEEcc-CCCeEEEEecCCCCCceEEEEcc--Cceee-----eecccccccEEEEEEcC---CCCEEEEccc
Q 036585 54 NSKKYGVDLVCFTS-HPTTVIYSSKNGWDESLRLLSLH--DNKYS-----RYFKGHHDRVVLLSLCS---SKDCFISGSL 122 (304)
Q Consensus 54 ~~~~~~v~~~~~~~-~~~~l~~~~~~~~d~~i~vwd~~--~~~~~-----~~~~~~~~~v~~~~~~~---~~~~l~~~~~ 122 (304)
++..+.+-.+.|.. +...+. -. -|.+.||++. .|+.. .........+.-+.|.| +..++..+..
T Consensus 129 kgf~G~v~dl~fah~~~pk~~--~~---vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~ 203 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPKGR--RL---VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK 203 (1283)
T ss_pred hcCCCCcccccccccCChHHH--HH---hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence 34455666666643 112222 11 4677888875 34322 22222233445555554 6667778888
Q ss_pred CCeEEEEeCCcceeeceEEEeccc--eeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEE
Q 036585 123 DRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200 (304)
Q Consensus 123 dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 200 (304)
++.+++....+... ..+..+... -+++- ..+.+.--..||||..|+.++.||.+++|
T Consensus 204 ~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~--------------------~~g~~~l~~lSpDGtv~a~a~~dG~v~f~ 262 (1283)
T KOG1916|consen 204 GGEIRLLNINRALR-SLFRSHSQRVTDMAFF--------------------AEGVLKLASLSPDGTVFAWAISDGSVGFY 262 (1283)
T ss_pred CCceeEeeechHHH-HHHHhcCCCcccHHHH--------------------hhchhhheeeCCCCcEEEEeecCCcccee
Confidence 88888877654433 222211110 00000 00111112379999999999999998888
Q ss_pred EcC-----CCceeEEEEeCCCCC-CcceEEEEcCCC---------cEEEEec-CCCcEEEEecCCCcee
Q 036585 201 DSF-----RGTLLSTYNVKPVSR-NSTLEASFSPEG---------MFVISGS-GDGSVHAWSVRSGKEV 253 (304)
Q Consensus 201 d~~-----~~~~~~~~~~~~~~~-~~i~~~~~s~~~---------~~l~~~~-~dg~i~v~d~~~~~~~ 253 (304)
.+. ...++...+ .|. .+-.|.-+..+. .++++++ .+..+++|.....+++
T Consensus 263 Qiyi~g~~~~rclhewk---phd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 263 QIYITGKIVHRCLHEWK---PHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeeeeccccHhhhhccC---CCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 753 223333344 233 232222233221 2344444 4556899987776665
No 455
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.21 E-value=0.68 Score=43.23 Aligned_cols=160 Identities=12% Similarity=0.160 Sum_probs=90.7
Q ss_pred eCCCeEEEEecCCcceeeeecccccceeEEEEc--------cCCCeEEEEecCCCCCceEEEEccCceee---eec----
Q 036585 34 SDDESIRLYDVTAATCLKTINSKKYGVDLVCFT--------SHPTTVIYSSKNGWDESLRLLSLHDNKYS---RYF---- 98 (304)
Q Consensus 34 ~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~l~~~~~~~~d~~i~vwd~~~~~~~---~~~---- 98 (304)
+-|+.+.+|+.+++.....+.+-...|..+..- |.=+++++.+. --.|.++-+.-.+.. ..+
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT---~~ei~ilgV~~~~~~~~~~~f~~~~ 172 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT---PVEIVILGVSFDEFTGELSIFNTSF 172 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecc---cceEEEEEEEeccccCcccccccce
Confidence 346789999999988888888766666666542 33345555554 667777755432211 111
Q ss_pred --ccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEe-cCCCCC
Q 036585 99 --KGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSV-GGDISD 175 (304)
Q Consensus 99 --~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 175 (304)
....-.|.++....+|+.|++|- || .+|.+.-......+... +-.+.....++..--.. +..+ ..+..+
T Consensus 173 ~i~~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~r---c~Kiclt~s~ls~lvPs--~~~~~~~~~dp 244 (1311)
T KOG1900|consen 173 KISVDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSR---CRKICLTKSVLSSLVPS--LLSVPGSSKDP 244 (1311)
T ss_pred eeecCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcc---cccccCchhHHHHhhhh--hhcCCCCCCCc
Confidence 11234678888777887777665 45 45544211111111000 00000000000000000 1112 256679
Q ss_pred ceEEEEecCCcEEEEeeCCCeEEEEEcCC
Q 036585 176 ANVVKFSNDGRLMLLTTMEGHIHVLDSFR 204 (304)
Q Consensus 176 v~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 204 (304)
|..+......+.+.+-+..|+|..||+..
T Consensus 245 I~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 245 IRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeEeccccceeeeeccCceEEEEEccC
Confidence 99999999999999999999999999865
No 456
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=94.17 E-value=2.3 Score=33.63 Aligned_cols=182 Identities=13% Similarity=0.124 Sum_probs=93.0
Q ss_pred ceEEEEccCceeeeeccc------ccccEEEEEEcCCC-----CEEEEc-ccCCeEEEEeCCcceeeceEEEeccceeEe
Q 036585 83 SLRLLSLHDNKYSRYFKG------HHDRVVLLSLCSSK-----DCFISG-SLDRTVLLWDQRAEKCQGLLRVQGRPAAAY 150 (304)
Q Consensus 83 ~i~vwd~~~~~~~~~~~~------~~~~v~~~~~~~~~-----~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 150 (304)
.|.+||+.+++.++.+.- ....+..+.+.... .+++.+ ...+.|.++|+.+++..+..... +..
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~----~~~ 110 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNS----FSP 110 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCG----CTT
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCC----cce
Confidence 666777777776555431 23466777776522 233332 33458999999998876555331 111
Q ss_pred cCCCeEEEecCCCeEEEEecCCCCCceEEEEec---CCcEEEEeeCCCeEEEEEcCC-----Cc---------eeEEEEe
Q 036585 151 DDQGLVFGYEKGPLDIFSVGGDISDANVVKFSN---DGRLMLLTTMEGHIHVLDSFR-----GT---------LLSTYNV 213 (304)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~~~d~~~-----~~---------~~~~~~~ 213 (304)
.|....+..... .+... ..+..++.+| +++.|.-....+. ++|.+.+ .. ....+-
T Consensus 111 ~p~~~~~~i~g~---~~~~~---dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG- 182 (287)
T PF03022_consen 111 DPDAGPFTIGGE---SFQWP---DGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLG- 182 (287)
T ss_dssp S-SSEEEEETTE---EEEET---TSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEE-
T ss_pred eccccceeccCc---eEecC---CCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceecc-
Confidence 111111111110 11111 2266667655 6777776665442 2333221 11 111221
Q ss_pred CCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCc---eeeeeecc---CCCCceEEeCC--CCcEEEEe
Q 036585 214 KPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGK---EVASWMSF---DTEPPVIKWAP--GSLMFVTG 278 (304)
Q Consensus 214 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~---~~~~~~~~---~~~i~~~~~~~--~~~~l~s~ 278 (304)
........++++++|..+++--..+.|..|+....- ....+... -..+.++.+.+ +|.+.+.+
T Consensus 183 --~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 183 --DKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp --E---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred --ccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 112355678999999999898899999999987521 12222111 24567888888 66544443
No 457
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=94.11 E-value=0.4 Score=24.78 Aligned_cols=30 Identities=20% Similarity=0.361 Sum_probs=23.8
Q ss_pred cCCcEEEEee-CCCeEEEEEcCCCceeEEEE
Q 036585 183 NDGRLMLLTT-MEGHIHVLDSFRGTLLSTYN 212 (304)
Q Consensus 183 ~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~ 212 (304)
|++++|+++. .++.|.++|..+++.+..+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 5677666655 57899999999998888877
No 458
>PRK13684 Ycf48-like protein; Provisional
Probab=94.06 E-value=2.7 Score=34.09 Aligned_cols=110 Identities=20% Similarity=0.202 Sum_probs=64.7
Q ss_pred CCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeC-CCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCce
Q 036585 174 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK-PVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKE 252 (304)
Q Consensus 174 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~ 252 (304)
..++.+.+.++++.++++ ..|.+++=....+..-.....+ ......+..+.+.|++..++++ .+|.+. .....++.
T Consensus 215 ~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~t 291 (334)
T PRK13684 215 RRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKT 291 (334)
T ss_pred ccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCC
Confidence 567889999999876665 4576653233444332322211 0122457788999988766555 567554 34444554
Q ss_pred eeeee---ccCCCCceEEeCCCCcEEEEecCc-eEEec
Q 036585 253 VASWM---SFDTEPPVIKWAPGSLMFVTGSSE-LSFWI 286 (304)
Q Consensus 253 ~~~~~---~~~~~i~~~~~~~~~~~l~s~~~d-~~iw~ 286 (304)
..... .-....+.+.|..+++.+++|... +--|+
T Consensus 292 W~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~ 329 (334)
T PRK13684 292 WEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYV 329 (334)
T ss_pred CeECCcCCCCCcceEEEEEeCCCceEEECCCceEEEec
Confidence 33332 222357788888888888877766 44443
No 459
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=94.00 E-value=3.3 Score=34.95 Aligned_cols=107 Identities=11% Similarity=0.216 Sum_probs=60.7
Q ss_pred CCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeC----CCCCCcceEEEEcCCC------cEEEEec----
Q 036585 172 DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK----PVSRNSTLEASFSPEG------MFVISGS---- 237 (304)
Q Consensus 172 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~----~~~~~~i~~~~~s~~~------~~l~~~~---- 237 (304)
.-.....|+|.|||++|++--..|.|++++..++......... .........++++|+- .+|+...
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 3456788999999986665544799999986554322211110 1135678899999874 2444432
Q ss_pred ------CCCcEEEEecCCC-------ce-eeeee---ccCCCCceEEeCCCCcEEEEecC
Q 036585 238 ------GDGSVHAWSVRSG-------KE-VASWM---SFDTEPPVIKWAPGSLMFVTGSS 280 (304)
Q Consensus 238 ------~dg~i~v~d~~~~-------~~-~~~~~---~~~~~i~~~~~~~~~~~l~s~~~ 280 (304)
....|.-|.+... +. +..+. .|. -..|+|.|||.+.++.++
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECC
Confidence 1223444554321 11 11111 132 357889999986665544
No 460
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=93.99 E-value=0.64 Score=40.56 Aligned_cols=74 Identities=18% Similarity=0.301 Sum_probs=44.4
Q ss_pred cCCcEEEEeeCCCeEEEEEcCC----CceeEEEEeC-------------------CCCCCcceEEEEcC----CCcEEEE
Q 036585 183 NDGRLMLLTTMEGHIHVLDSFR----GTLLSTYNVK-------------------PVSRNSTLEASFSP----EGMFVIS 235 (304)
Q Consensus 183 ~~~~~l~~~~~dg~i~~~d~~~----~~~~~~~~~~-------------------~~~~~~i~~~~~s~----~~~~l~~ 235 (304)
++...++++..||.+....... +......... .........+++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3666788888888888777653 2222211110 01123455566666 7789999
Q ss_pred ecCCCcEEEEecCCCceeeee
Q 036585 236 GSGDGSVHAWSVRSGKEVASW 256 (304)
Q Consensus 236 ~~~dg~i~v~d~~~~~~~~~~ 256 (304)
.+.|+.+|+||+.+++++...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999985554
No 461
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.64 E-value=1.5 Score=29.73 Aligned_cols=119 Identities=9% Similarity=0.153 Sum_probs=67.1
Q ss_pred EEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEec---
Q 036585 107 LLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSN--- 183 (304)
Q Consensus 107 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--- 183 (304)
.-.|......|++++.-|+|.|++.......... .+..+...++. ..|++++-.+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~-------------------~~~~i~~LNin---~~italaaG~l~~ 60 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGR-------------------QDSDISFLNIN---QEITALAAGRLKP 60 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCcccccccc-------------------ccCceeEEECC---CceEEEEEEecCC
Confidence 3456556667888888899999987654322111 11122222222 3455554332
Q ss_pred --CCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcC----CCcEEEEecCCCcEEEEecCCCcee
Q 036585 184 --DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP----EGMFVISGSGDGSVHAWSVRSGKEV 253 (304)
Q Consensus 184 --~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~----~~~~l~~~~~dg~i~v~d~~~~~~~ 253 (304)
+...|+.|+. ..+..||+.....+.... ....+.++.+-. +..++++| .+..|.-||..-.+..
T Consensus 61 ~~~~D~LliGt~-t~llaYDV~~N~d~Fyke----~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 61 DDGRDCLLIGTQ-TSLLAYDVENNSDLFYKE----VPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIF 130 (136)
T ss_pred CCCcCEEEEecc-ceEEEEEcccCchhhhhh----CccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEE
Confidence 3456666665 478999998776655444 335556555532 23444444 4667888886544433
No 462
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.55 E-value=5.2 Score=37.71 Aligned_cols=32 Identities=13% Similarity=0.141 Sum_probs=26.5
Q ss_pred eecceeeEeecccCcEEEEeeCCCeEEEEecC
Q 036585 14 LELSEEILQSMEVGIYLVTASDDESIRLYDVT 45 (304)
Q Consensus 14 ~~~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~ 45 (304)
+......+.+.+.-.++|.+...|.|+++-..
T Consensus 34 ~~~~~~~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 34 FPSTPSALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred CCCCCcceeeccccceEEEEEecccEEEeccc
Confidence 34456678888999999999999999999754
No 463
>PRK13684 Ycf48-like protein; Provisional
Probab=93.36 E-value=3.6 Score=33.34 Aligned_cols=110 Identities=10% Similarity=0.072 Sum_probs=63.6
Q ss_pred CCCceEEEEecCCcEEEEeeCCCeEEEE-EcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCc
Q 036585 173 ISDANVVKFSNDGRLMLLTTMEGHIHVL-DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGK 251 (304)
Q Consensus 173 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~-d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~ 251 (304)
...+..+.+.|++.+++++. .|.+..- | ..++.-..... .....++.+.+.|+++.++++ ..|.+++=....+.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~--~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~ 246 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQR--NSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLE 246 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeC--CCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCC
Confidence 35678889999887665554 4554432 2 22222222221 355788999999999877766 46766432334444
Q ss_pred eeeeeecc----CCCCceEEeCCCCcEEEEecCceEEecc
Q 036585 252 EVASWMSF----DTEPPVIKWAPGSLMFVTGSSELSFWIP 287 (304)
Q Consensus 252 ~~~~~~~~----~~~i~~~~~~~~~~~l~s~~~d~~iw~~ 287 (304)
.-.....+ ...+..+.+.|++..++++.....+...
T Consensus 247 sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~S~ 286 (334)
T PRK13684 247 SWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLVSK 286 (334)
T ss_pred ccccccCCccccccceeeEEEcCCCCEEEEcCCCeEEEeC
Confidence 32222111 2346788999988877766554444433
No 464
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=93.29 E-value=4.8 Score=34.52 Aligned_cols=176 Identities=13% Similarity=0.065 Sum_probs=74.3
Q ss_pred CcEEEEe---eCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccc
Q 036585 27 GIYLVTA---SDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHD 103 (304)
Q Consensus 27 ~~~l~~~---~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 103 (304)
|-+++.. ...+...+.|.+ |.....+.........+...++|.+++.. ...++.+|+. |+.+..+.....
T Consensus 115 gl~~~~~~~~~~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~-----~~~~~e~D~~-G~v~~~~~l~~~ 187 (477)
T PF05935_consen 115 GLYFVNGNDWDSSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGS-----GNRLYEIDLL-GKVIWEYDLPGG 187 (477)
T ss_dssp -EEEEEETT--BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEE-----BTEEEEE-TT---EEEEEE--TT
T ss_pred cEEEEeCCCCCCCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEec-----CCceEEEcCC-CCEEEeeecCCc
Confidence 4345555 234456666743 55554444332222226667788777655 4577888875 444333321111
Q ss_pred c---EEEEEEcCCCCEEEEccc-------------CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEE
Q 036585 104 R---VVLLSLCSSKDCFISGSL-------------DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIF 167 (304)
Q Consensus 104 ~---v~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (304)
. =..+...|+|++|+.+.. .-.|..+| .+++.+...................... ......
T Consensus 188 ~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~--~~~~~~ 264 (477)
T PF05935_consen 188 YYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPY--GDISGS 264 (477)
T ss_dssp EE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--S--SSSS-S
T ss_pred ccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccc--cccccC
Confidence 1 134667789998887762 12355555 6666555544322110000000000000 000000
Q ss_pred EecCCCCCceEEEEec-CCcEEEEeeCCCeEEEEEcCCCceeEEEE
Q 036585 168 SVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLLSTYN 212 (304)
Q Consensus 168 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 212 (304)
.-...---++++.+.+ ++.+++++-.-..|...|.++++....+.
T Consensus 265 ~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg 310 (477)
T PF05935_consen 265 GGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILG 310 (477)
T ss_dssp STTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES
T ss_pred CCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeC
Confidence 0000112467899988 55555555555588899988888776665
No 465
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.22 E-value=5.5 Score=37.75 Aligned_cols=164 Identities=12% Similarity=0.231 Sum_probs=95.5
Q ss_pred ceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEc-CCC-------CEEEEcccCCeEEEEe
Q 036585 59 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLC-SSK-------DCFISGSLDRTVLLWD 130 (304)
Q Consensus 59 ~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~-------~~l~~~~~dg~i~iwd 130 (304)
.-..+-+-|.=.+....- |+.+.+|+.+++.....+.+-...|..+..- |.. ++++....--.|.++-
T Consensus 80 ~~~~mGiFpeI~RaWiTi----Dn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilg 155 (1311)
T KOG1900|consen 80 CKTDMGIFPEIGRAWITI----DNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILG 155 (1311)
T ss_pred eeeeeccchhhcceEEEe----CCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEE
Confidence 334455556555555554 9999999999987777777777777776643 332 2333333334455554
Q ss_pred CCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEc----CCC-
Q 036585 131 QRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDS----FRG- 205 (304)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~----~~~- 205 (304)
+.-......... +.+ .+.+......|+++....+|+.|++|- || .+|.+ ..+
T Consensus 156 V~~~~~~~~~~~----------------f~~----~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gW 212 (1311)
T KOG1900|consen 156 VSFDEFTGELSI----------------FNT----SFKISVDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGW 212 (1311)
T ss_pred EEeccccCcccc----------------ccc----ceeeecCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCch
Confidence 322211110000 000 023333456788888888888666654 44 34432 111
Q ss_pred --c-e-------------eEEE-EeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCC
Q 036585 206 --T-L-------------LSTY-NVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRS 249 (304)
Q Consensus 206 --~-~-------------~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~ 249 (304)
+ + +.++ .....+..+|..+......+.+++-++.|.|.+||+..
T Consensus 213 f~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 213 FGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 1 0 0111 11113567899999998888999999999999999965
No 466
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.20 E-value=0.15 Score=45.42 Aligned_cols=107 Identities=16% Similarity=0.232 Sum_probs=66.7
Q ss_pred CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEE-----------EccCCCeEEEEecCCCCCceEEEEcc-----
Q 036585 27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC-----------FTSHPTTVIYSSKNGWDESLRLLSLH----- 90 (304)
Q Consensus 27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~l~~~~~~~~d~~i~vwd~~----- 90 (304)
.-++..+-.++.+++.+..+... ..+.+|...+..++ .+|||+.++.+.. ||.++.|.+.
T Consensus 195 ~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~---dG~v~f~Qiyi~g~~ 270 (1283)
T KOG1916|consen 195 KVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAIS---DGSVGFYQIYITGKI 270 (1283)
T ss_pred cceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeec---CCccceeeeeeeccc
Confidence 45677777888888877654332 33445655444433 5899999999998 8888888663
Q ss_pred Cceeeeeccccc-ccEEEEEEcCCCC---------EEEEc-ccCCeEEEEeCCcceee
Q 036585 91 DNKYSRYFKGHH-DRVVLLSLCSSKD---------CFISG-SLDRTVLLWDQRAEKCQ 137 (304)
Q Consensus 91 ~~~~~~~~~~~~-~~v~~~~~~~~~~---------~l~~~-~~dg~i~iwd~~~~~~~ 137 (304)
.-.+....+.|. .+-.|.-++.+.. +++++ ..+..+++|.-..-++.
T Consensus 271 ~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 271 VHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred cHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 234556667777 3433433553322 33343 34567888887666655
No 467
>PLN02153 epithiospecifier protein
Probab=93.08 E-value=4.1 Score=33.14 Aligned_cols=66 Identities=11% Similarity=0.149 Sum_probs=33.5
Q ss_pred cCcEEEEeeCC-------CeEEEEecCCcceeeeecc----ccc---ceeEEEEccCCCeEEEEecCC--CCCceEEEEc
Q 036585 26 VGIYLVTASDD-------ESIRLYDVTAATCLKTINS----KKY---GVDLVCFTSHPTTVIYSSKNG--WDESLRLLSL 89 (304)
Q Consensus 26 ~~~~l~~~~~d-------~~i~vw~~~~~~~~~~~~~----~~~---~v~~~~~~~~~~~l~~~~~~~--~d~~i~vwd~ 89 (304)
++++++.|+.+ ..+.+||+.+.+-. .+.. ... ....+.+ +++.++.|+..+ .-..+.+||.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWS-IAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEE-EcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEEC
Confidence 46677777753 24778887764322 1111 110 1112222 566666666421 1135778888
Q ss_pred cCcee
Q 036585 90 HDNKY 94 (304)
Q Consensus 90 ~~~~~ 94 (304)
.+.+-
T Consensus 109 ~t~~W 113 (341)
T PLN02153 109 VKNEW 113 (341)
T ss_pred CCCEE
Confidence 77643
No 468
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=92.99 E-value=4.9 Score=33.83 Aligned_cols=31 Identities=16% Similarity=0.484 Sum_probs=25.2
Q ss_pred CcceEEEEcCCCcEEEEecCCCcEEEEecCC
Q 036585 219 NSTLEASFSPEGMFVISGSGDGSVHAWSVRS 249 (304)
Q Consensus 219 ~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~ 249 (304)
..|.+++..+..+.+++...+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 4488999999889999999999999999974
No 469
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=92.98 E-value=3.6 Score=32.17 Aligned_cols=104 Identities=10% Similarity=0.031 Sum_probs=65.6
Q ss_pred CcEEEEeeCCCeEEEEecCCcceeeeecccc--cceeEEEEccCCCeEEEEecCCCCCceEEEEccCceee---eecccc
Q 036585 27 GIYLVTASDDESIRLYDVTAATCLKTINSKK--YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYS---RYFKGH 101 (304)
Q Consensus 27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~---~~~~~~ 101 (304)
+++...+..+.-++|.|+.+......+..-. +--.++ .-.|++..++.- |.-+.+.|+.+.+.. ..+...
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv--~vsGn~aYVadl---ddgfLivdvsdpssP~lagrya~~ 170 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGV--YVSGNYAYVADL---DDGFLIVDVSDPSSPQLAGRYALP 170 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEE--EecCCEEEEeec---cCcEEEEECCCCCCceeeeeeccC
Confidence 6777888788889999998765443332211 223333 346888877775 666778888765432 223333
Q ss_pred cccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceee
Q 036585 102 HDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 137 (304)
Q Consensus 102 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 137 (304)
...-..++.+ |++-+.+..|+-+.+.|+......
T Consensus 171 ~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sP 204 (370)
T COG5276 171 GGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSP 204 (370)
T ss_pred CCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCC
Confidence 3333455554 667777788899999998765443
No 470
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=92.88 E-value=1.8 Score=38.36 Aligned_cols=35 Identities=9% Similarity=0.217 Sum_probs=29.0
Q ss_pred cccEEEEEEcCCCCEEEEcccCCeEEEEeCCccee
Q 036585 102 HDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKC 136 (304)
Q Consensus 102 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 136 (304)
...++++.-+|.++-++.+..||.|++|+....+.
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~q 48 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQ 48 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccch
Confidence 34577888899999999999999999999765544
No 471
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=92.79 E-value=0.69 Score=38.14 Aligned_cols=169 Identities=11% Similarity=0.036 Sum_probs=92.6
Q ss_pred cccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCce
Q 036585 98 FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDAN 177 (304)
Q Consensus 98 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 177 (304)
+......|..+-..|+++.++.-+. ..+.++++.+.......-....+ . .....|+
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dsp------g-----------------~~~~~Vt 271 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSP------G-----------------DSRHQVT 271 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCC------C-----------------chHHHHH
Confidence 4444566778888999998777655 67888887665433221000000 0 0001122
Q ss_pred -EEEEecCCcEEEEeeCCCeEEEE-EcCCC-ce-eEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCcee
Q 036585 178 -VVKFSNDGRLMLLTTMEGHIHVL-DSFRG-TL-LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEV 253 (304)
Q Consensus 178 -~~~~~~~~~~l~~~~~dg~i~~~-d~~~~-~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~ 253 (304)
.+..-..|..+++++.||-|.-| |.+.+ .+ ........-...++..+.=..+.+-+++-+.+|++.++.....+.+
T Consensus 272 e~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l 351 (733)
T COG4590 272 EQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL 351 (733)
T ss_pred HHHHHHhCceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce
Confidence 12223346668888888887766 54432 21 1111111112233333322223455777788888888775444432
Q ss_pred eeeeccCCCCceEEeCCCCcEEEEecCc-eEEeccCCcc
Q 036585 254 ASWMSFDTEPPVIKWAPGSLMFVTGSSE-LSFWIPDLSK 291 (304)
Q Consensus 254 ~~~~~~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~~~~~ 291 (304)
-. ..-...+.-+++||.+.++++-... ++++.++.+.
T Consensus 352 L~-~~~~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~Nr~ 389 (733)
T COG4590 352 LF-ERAYQAPQLVAMSPNQAYLLSEDQGKIRLAQLENRN 389 (733)
T ss_pred eh-hhhhcCcceeeeCcccchheeecCCceEEEEecCCC
Confidence 22 2222356778999999999877666 8888776554
No 472
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=92.65 E-value=0.63 Score=23.66 Aligned_cols=30 Identities=7% Similarity=0.139 Sum_probs=20.8
Q ss_pred cccceeEEEEccCCCeEEEEecCCCC--CceEEE
Q 036585 56 KKYGVDLVCFTSHPTTVIYSSKNGWD--ESLRLL 87 (304)
Q Consensus 56 ~~~~v~~~~~~~~~~~l~~~~~~~~d--~~i~vw 87 (304)
....-....|+|||+.|+.++.. + |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~--~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNR--NDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEEC--T--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecC--CCCCCcCEE
Confidence 34456788999999999998864 4 555554
No 473
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=92.46 E-value=4.5 Score=32.01 Aligned_cols=182 Identities=12% Similarity=0.134 Sum_probs=88.8
Q ss_pred eEEEEecCCcceeeeeccc------ccceeEEEEccCCC----eEEEEecCCCCCceEEEEccCceeeeeccccc-----
Q 036585 38 SIRLYDVTAATCLKTINSK------KYGVDLVCFTSHPT----TVIYSSKNGWDESLRLLSLHDNKYSRYFKGHH----- 102 (304)
Q Consensus 38 ~i~vw~~~~~~~~~~~~~~------~~~v~~~~~~~~~~----~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~----- 102 (304)
.|.+||+.+++.++++.-+ ...+..+.+..... .++.-+..+ .+.|.|+|+.+++.-+.+..+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~-~~glIV~dl~~~~s~Rv~~~~~~~~p~ 113 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSG-GPGLIVYDLATGKSWRVLHNSFSPDPD 113 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETT-TCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCC-cCcEEEEEccCCcEEEEecCCcceecc
Confidence 6889999999988877643 34567777766322 344444322 5689999999987655443221
Q ss_pred --------------ccEEEEEEcC---CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeE
Q 036585 103 --------------DRVVLLSLCS---SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLD 165 (304)
Q Consensus 103 --------------~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (304)
+.+..++.+| +++.|+-....+ -++|.+.+......-..... .. ...
T Consensus 114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~---~~----------~~~-- 177 (287)
T PF03022_consen 114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQ---AL----------ASQ-- 177 (287)
T ss_dssp SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH----H----------HHT--
T ss_pred ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccc---cc----------ccc--
Confidence 1233344433 333333322211 11121111100000000000 00 000
Q ss_pred EEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCc---eeEEEEeCCCCCCcceEEEEcC--CCcEEEEe
Q 036585 166 IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT---LLSTYNVKPVSRNSTLEASFSP--EGMFVISG 236 (304)
Q Consensus 166 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~---~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~ 236 (304)
+..+.........++++++|.++++--..+.|..|+..+.- ....+...+..-..+..+.+.+ +|.+.+..
T Consensus 178 v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 178 VQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp -EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred ceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 00111111345668899999988888889999999987521 2233332222235667888888 66544443
No 474
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=92.37 E-value=5.5 Score=32.84 Aligned_cols=199 Identities=12% Similarity=0.012 Sum_probs=104.5
Q ss_pred cEEEEeeCCCeEEEEecCCcceeeeeccc--ccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccccc-cc
Q 036585 28 IYLVTASDDESIRLYDVTAATCLKTINSK--KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHH-DR 104 (304)
Q Consensus 28 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~ 104 (304)
..++.+..+|.|.-.|.++++.+-....- ...+..-.+..+|+ +++++. ++.++.+|..+++......... ..
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~---~g~~y~ld~~~G~~~W~~~~~~~~~ 144 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSW---DGKLYALDASTGTLVWSRNVGGSPY 144 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecc---cceEEEEECCCCcEEEEEecCCCeE
Confidence 44555577888888888888765332221 12223333333665 666665 8889999998888777666444 11
Q ss_pred EEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecC
Q 036585 105 VVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSND 184 (304)
Q Consensus 105 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 184 (304)
+.......++ .++..+.++.+...|..+++.......... .... ...... ..+
T Consensus 145 ~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~--~~~~-------------------~~~~~~-----~~~ 197 (370)
T COG1520 145 YASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAP--LSLS-------------------IYGSPA-----IAS 197 (370)
T ss_pred EecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCc--cccc-------------------cccCce-----eec
Confidence 1222222233 444444678888888888877666543321 0000 000001 122
Q ss_pred CcEEEEeeC--CCeEEEEEcCCCceeEEEEeCCCCC-CcceEE-EEcC----CCcEEEEecCCCcEEEEecCCCceeeee
Q 036585 185 GRLMLLTTM--EGHIHVLDSFRGTLLSTYNVKPVSR-NSTLEA-SFSP----EGMFVISGSGDGSVHAWSVRSGKEVASW 256 (304)
Q Consensus 185 ~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~-~~i~~~-~~s~----~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 256 (304)
+ .++.+.. ++.+.-.|..+|+............ ..+... .+.. .+.-++.++.++.+...|..+++.+-++
T Consensus 198 ~-~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~ 276 (370)
T COG1520 198 G-TVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSF 276 (370)
T ss_pred c-eEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEE
Confidence 3 2444444 5567777777777766643111111 101000 1100 1122355566777888888888877666
Q ss_pred ec
Q 036585 257 MS 258 (304)
Q Consensus 257 ~~ 258 (304)
..
T Consensus 277 ~~ 278 (370)
T COG1520 277 PA 278 (370)
T ss_pred ec
Confidence 54
No 475
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.24 E-value=8.6 Score=34.81 Aligned_cols=74 Identities=14% Similarity=0.193 Sum_probs=52.5
Q ss_pred cceeEEEEccCCCeEEEEecCCCCCceEEEEccC----------cee--e-ee-------c-ccccccEEEEEEcCC---
Q 036585 58 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD----------NKY--S-RY-------F-KGHHDRVVLLSLCSS--- 113 (304)
Q Consensus 58 ~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~----------~~~--~-~~-------~-~~~~~~v~~~~~~~~--- 113 (304)
-.|..+.++|+|++++..+. ..|.|..+.. ++. . ++ + ..+...|..+.|+|.
T Consensus 85 f~v~~i~~n~~g~~lal~G~----~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGP----RGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSES 160 (717)
T ss_pred eeEEEEEECCCCCEEEEEcC----CcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCC
Confidence 46889999999999999984 4555555531 111 1 11 1 134458899999995
Q ss_pred CCEEEEcccCCeEEEEeCCcce
Q 036585 114 KDCFISGSLDRTVLLWDQRAEK 135 (304)
Q Consensus 114 ~~~l~~~~~dg~i~iwd~~~~~ 135 (304)
+..|+.-..|+++|+||+....
T Consensus 161 ~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CCeEEEEecCCEEEEEecCCCC
Confidence 5788888999999999997543
No 476
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=92.22 E-value=2.3 Score=37.20 Aligned_cols=72 Identities=17% Similarity=0.267 Sum_probs=44.9
Q ss_pred cCCCeEEEEecCCCCCceEEEEccC----ceeee-----------eccc-----------ccccEEEEEEcC----CCCE
Q 036585 67 SHPTTVIYSSKNGWDESLRLLSLHD----NKYSR-----------YFKG-----------HHDRVVLLSLCS----SKDC 116 (304)
Q Consensus 67 ~~~~~l~~~~~~~~d~~i~vwd~~~----~~~~~-----------~~~~-----------~~~~v~~~~~~~----~~~~ 116 (304)
++...++++.. ||.+....... +.... .+.+ ....+..+++++ +..+
T Consensus 156 ~~~~~l~v~~~---dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (547)
T PF11715_consen 156 DSEANLVVSLQ---DGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTF 232 (547)
T ss_dssp -SSSBEEEEES---SS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTE
T ss_pred cCCCEEEEEEC---CCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCE
Confidence 46777888887 88888887764 11110 0110 123455566665 6779
Q ss_pred EEEcccCCeEEEEeCCcceeeceEE
Q 036585 117 FISGSLDRTVLLWDQRAEKCQGLLR 141 (304)
Q Consensus 117 l~~~~~dg~i~iwd~~~~~~~~~~~ 141 (304)
+++.+.|+++|+||+.+++++....
T Consensus 233 l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 233 LFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EEEEETTSEEEEEETTTTCEEEEEE
T ss_pred EEEEeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999999865543
No 477
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=91.90 E-value=5.5 Score=31.80 Aligned_cols=220 Identities=12% Similarity=0.123 Sum_probs=107.4
Q ss_pred CcEEEEeeCCCeEEEEecCC--cceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee----------
Q 036585 27 GIYLVTASDDESIRLYDVTA--ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY---------- 94 (304)
Q Consensus 27 ~~~l~~~~~d~~i~vw~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~---------- 94 (304)
+++|+.|..+| +.+.+..+ .+..+.+ +...|.++...+..+.|++-+.. ...++++++..-..
T Consensus 13 ~~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk--~~~L~~~~L~~L~~~~~~~~~~~~ 87 (302)
T smart00036 13 GKWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGK--KPQLYSHPLSALVEKKEALGSARL 87 (302)
T ss_pred CcEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCC--cceEEEEEHHHhhhhhhccCCccc
Confidence 36899999999 55555554 2333333 34589999999999888888732 33499999843221
Q ss_pred -----eeecccccccEEEEEEcCCC-CEEEEcccCCeEEEEeCCcc--e--eeceE---E-E-eccc-eeE----ecCCC
Q 036585 95 -----SRYFKGHHDRVVLLSLCSSK-DCFISGSLDRTVLLWDQRAE--K--CQGLL---R-V-QGRP-AAA----YDDQG 154 (304)
Q Consensus 95 -----~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~--~--~~~~~---~-~-~~~~-~~~----~~~~~ 154 (304)
....-++......+...... ..++++....+|.++..... + ....+ . . +... ... +....
T Consensus 88 ~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (302)
T smart00036 88 VIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPG 167 (302)
T ss_pred cccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceE
Confidence 00111233333333333221 23444445566666543222 1 11110 0 0 0011 111 11234
Q ss_pred eEEEecCCCeEEEEecCC---------------CC-CceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCC
Q 036585 155 LVFGYEKGPLDIFSVGGD---------------IS-DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 218 (304)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~---------------~~-~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~ 218 (304)
..++...+...+.++..+ .. ...++..-+++.+|+ +-.+ ...+.|....+....... .-.
T Consensus 168 lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Ll-c~~~-~~v~Vn~~G~~~~r~~~l--~w~ 243 (302)
T smart00036 168 ICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLL-CYDE-FGVFVNLYGKRRSRNPIL--HWE 243 (302)
T ss_pred EEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEE-EECc-EEEEEeCCCCccccceEE--EcC
Confidence 555555423333333210 00 122222233444433 3332 344555432122221111 134
Q ss_pred CcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeec
Q 036585 219 NSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMS 258 (304)
Q Consensus 219 ~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 258 (304)
....++++. ..+|++-.. ..|.|+++.+++.++++..
T Consensus 244 ~~p~~~~~~--~pyll~~~~-~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 244 FMPESFAYH--SPYLLAFHD-NGIEIRSIKTGELLQELAD 280 (302)
T ss_pred CcccEEEEE--CCEEEEEcC-CcEEEEECCCCceEEEEec
Confidence 455667776 357776654 4599999999998888763
No 478
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=91.85 E-value=2.1 Score=26.85 Aligned_cols=42 Identities=14% Similarity=0.137 Sum_probs=29.0
Q ss_pred eeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEe
Q 036585 191 TTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG 236 (304)
Q Consensus 191 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 236 (304)
+..+|.+..||..+++...... .-...+.+++++|+.+++.+
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~----~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLD----GLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEE----EESSEEEEEE-TTSSEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehh----CCCccCeEEEcCCCCEEEEE
Confidence 3456889999999987655555 23456789999999987766
No 479
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=91.79 E-value=4.7 Score=30.84 Aligned_cols=117 Identities=15% Similarity=0.173 Sum_probs=65.4
Q ss_pred EEEecCCcEEEEeeC-C--CeEEEEEcCC----CceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCC-cEEEEecCCC
Q 036585 179 VKFSNDGRLMLLTTM-E--GHIHVLDSFR----GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG-SVHAWSVRSG 250 (304)
Q Consensus 179 ~~~~~~~~~l~~~~~-d--g~i~~~d~~~----~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~v~d~~~~ 250 (304)
-.+-+||+++.+|+. + ..+++++..+ ......... ......--....-|||+.|+.|+.+. ...+|.-+..
T Consensus 72 g~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~-m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~ 150 (243)
T PF07250_consen 72 GAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPND-MQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGP 150 (243)
T ss_pred cCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccc-ccCCCccccceECCCCCEEEEeCcCCCcccccCCccC
Confidence 356689999888765 2 3578887543 111110000 01222222344557999999888764 3445543221
Q ss_pred -ceeee---ee-----ccCCCCceEEeCCCCcEEEEecCceEEeccCCccc-cccc
Q 036585 251 -KEVAS---WM-----SFDTEPPVIKWAPGSLMFVTGSSELSFWIPDLSKL-GAYV 296 (304)
Q Consensus 251 -~~~~~---~~-----~~~~~i~~~~~~~~~~~l~s~~~d~~iw~~~~~~~-~~~~ 296 (304)
..... +. ....----+-..|+|++++.+..+-.||++..+++ +++.
T Consensus 151 ~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 151 GPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIYDYKTNTVVRTLP 206 (243)
T ss_pred CCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEEeCCCCeEEeeCC
Confidence 11111 11 01122235667899999999999989999987764 4443
No 480
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=91.60 E-value=8.1 Score=33.18 Aligned_cols=115 Identities=16% Similarity=0.204 Sum_probs=56.4
Q ss_pred EEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecC-------------CCcEEEE
Q 036585 179 VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG-------------DGSVHAW 245 (304)
Q Consensus 179 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-------------dg~i~v~ 245 (304)
+...++|.+++... ..+..+|+ .|+.+..+.........-..+..-|+|++|+.+.. .-.|..+
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~-~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDL-LGKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-T-T--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcC-CCCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 66778888776555 78889997 47776666643211111234677889998887761 1125555
Q ss_pred ecCCCceeeeee--ccC-------------------------CCCceEEeCC-CCcEEEEecCc--eEEeccCCcccccc
Q 036585 246 SVRSGKEVASWM--SFD-------------------------TEPPVIKWAP-GSLMFVTGSSE--LSFWIPDLSKLGAY 295 (304)
Q Consensus 246 d~~~~~~~~~~~--~~~-------------------------~~i~~~~~~~-~~~~l~s~~~d--~~iw~~~~~~~~~~ 295 (304)
| .+|+.+..+. .|- ..++++.+.+ ++.+++|+-.- |-..+....++...
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi 308 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI 308 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence 5 5666544431 010 1367899988 55566655544 44444445555544
Q ss_pred cc
Q 036585 296 VG 297 (304)
Q Consensus 296 ~~ 297 (304)
.+
T Consensus 309 lg 310 (477)
T PF05935_consen 309 LG 310 (477)
T ss_dssp ES
T ss_pred eC
Confidence 44
No 481
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.53 E-value=7.2 Score=32.47 Aligned_cols=151 Identities=9% Similarity=-0.005 Sum_probs=80.6
Q ss_pred eeEEEEccCCCeEEEEecCCCCCceEE-EEccCcee--eeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCccee
Q 036585 60 VDLVCFTSHPTTVIYSSKNGWDESLRL-LSLHDNKY--SRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKC 136 (304)
Q Consensus 60 v~~~~~~~~~~~l~~~~~~~~d~~i~v-wd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 136 (304)
...+..++++..++++. .|.+.. ||- ++. ...-......++++.+.+++..++++ ..|.+.. ....++.
T Consensus 241 f~~v~~~~dG~~~~vg~----~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~ 312 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSS----RGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLT 312 (398)
T ss_pred eeeEEEcCCCCEEEEEC----CccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCc
Confidence 34456677777777776 444332 332 221 11112234568899999998877665 4455433 3333321
Q ss_pred ec--eEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeC
Q 036585 137 QG--LLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK 214 (304)
Q Consensus 137 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 214 (304)
.. .+.... .......+..+.|.+++..+ +++..|.+.... ..|+.-......
T Consensus 313 ~~~~~f~~~~------------------------~~~~~~~l~~v~~~~d~~~~-a~G~~G~v~~s~-D~G~tW~~~~~~ 366 (398)
T PLN00033 313 EEDFDFEEAD------------------------IKSRGFGILDVGYRSKKEAW-AAGGSGILLRST-DGGKSWKRDKGA 366 (398)
T ss_pred ccccceeecc------------------------cCCCCcceEEEEEcCCCcEE-EEECCCcEEEeC-CCCcceeEcccc
Confidence 11 111100 00112347788898887754 455667665553 344433332211
Q ss_pred CCCCCcceEEEEcCCCcEEEEecCCCcEEEE
Q 036585 215 PVSRNSTLEASFSPEGMFVISGSGDGSVHAW 245 (304)
Q Consensus 215 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~ 245 (304)
.......+.+.|.++++.+++| .+|.|.-|
T Consensus 367 ~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 367 DNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred CCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 2334578899998877766666 57766544
No 482
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=91.22 E-value=2.9 Score=30.14 Aligned_cols=31 Identities=13% Similarity=0.070 Sum_probs=25.3
Q ss_pred ccEEEEEEcCCC------CEEEEcccCCeEEEEeCCc
Q 036585 103 DRVVLLSLCSSK------DCFISGSLDRTVLLWDQRA 133 (304)
Q Consensus 103 ~~v~~~~~~~~~------~~l~~~~~dg~i~iwd~~~ 133 (304)
..+.+++|+|.| -+|++.+.++.+.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999954 2788889999999998664
No 483
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=90.08 E-value=3.1 Score=29.96 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=24.9
Q ss_pred CCceEEEEecCC------cEEEEeeCCCeEEEEEcCC
Q 036585 174 SDANVVKFSNDG------RLMLLTTMEGHIHVLDSFR 204 (304)
Q Consensus 174 ~~v~~~~~~~~~------~~l~~~~~dg~i~~~d~~~ 204 (304)
..+..++|||.| -.|++-+.+|.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 467889999954 4788889999999998653
No 484
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=89.87 E-value=8.4 Score=30.43 Aligned_cols=232 Identities=15% Similarity=0.169 Sum_probs=125.0
Q ss_pred EeecccCcEEEEeeCCCeEEEEecC------Cc-ceeeeecc-----cccceeEEEEccCCCe------------EEEEe
Q 036585 21 LQSMEVGIYLVTASDDESIRLYDVT------AA-TCLKTINS-----KKYGVDLVCFTSHPTT------------VIYSS 76 (304)
Q Consensus 21 i~~~~~~~~l~~~~~d~~i~vw~~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~~------------l~~~~ 76 (304)
+.+.|.+.+-++....+...+||.. .. .++-++.. .....+.+.|+..... ++.++
T Consensus 28 ia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~t 107 (336)
T TIGR03118 28 LSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFVT 107 (336)
T ss_pred eEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEEe
Confidence 6677778777777777889999986 11 22333331 1235666777643332 56666
Q ss_pred cCCCCCceEEEEccCcee-----eeecc-cccccE-EEEEEcC--CCCEEEEc-ccCCeEEEEeCCcceeec--eEEEec
Q 036585 77 KNGWDESLRLLSLHDNKY-----SRYFK-GHHDRV-VLLSLCS--SKDCFISG-SLDRTVLLWDQRAEKCQG--LLRVQG 144 (304)
Q Consensus 77 ~~~~d~~i~vwd~~~~~~-----~~~~~-~~~~~v-~~~~~~~--~~~~l~~~-~~dg~i~iwd~~~~~~~~--~~~~~~ 144 (304)
+ ||+|.=|...-+.. ...+. .....| ..+++.. .+.+|+.+ -..++|.++|-.-.+... .+.-+.
T Consensus 108 E---dGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 108 E---DGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred C---CceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 6 99999998533221 11121 112333 3455543 34555554 457889888754332211 011000
Q ss_pred cceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEE
Q 036585 145 RPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA 224 (304)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~ 224 (304)
.+ .-+.|- .+..+.+ .-.|+-..-.+++..=+.+..-|.|-+||+ .++.++++... +.-...+.+
T Consensus 185 iP-agyAPF-----------nIqnig~-~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~-g~LNaPWG~ 249 (336)
T TIGR03118 185 LP-AGYAPF-----------NVQNLGG-TLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASS-GRLNAPWGL 249 (336)
T ss_pred CC-CCCCCc-----------ceEEECC-eEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccC-CcccCCcee
Confidence 00 001110 0111100 001111222333333444556689999996 67888887632 233445567
Q ss_pred EEcC------CCcEEEEecCCCcEEEEecCCCceeeeeeccCC------CCceEEeCC
Q 036585 225 SFSP------EGMFVISGSGDGSVHAWSVRSGKEVASWMSFDT------EPPVIKWAP 270 (304)
Q Consensus 225 ~~s~------~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~------~i~~~~~~~ 270 (304)
+..| .+.+|+---.||+|..||..+++.+..+....+ .++.|.|..
T Consensus 250 a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 250 AIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred eeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 7765 455666556799999999999988777754332 357788865
No 485
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=89.86 E-value=9.1 Score=30.84 Aligned_cols=25 Identities=4% Similarity=-0.088 Sum_probs=16.1
Q ss_pred cCCcEEEEeeCCC----eEEEEEcCCCce
Q 036585 183 NDGRLMLLTTMEG----HIHVLDSFRGTL 207 (304)
Q Consensus 183 ~~~~~l~~~~~dg----~i~~~d~~~~~~ 207 (304)
.++++.+.|+.++ .+..||..+.+.
T Consensus 170 ~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 170 LQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred ECCEEEEEcCCCCccccceEEEecCCCee
Confidence 3566677776553 356888877654
No 486
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=89.85 E-value=16 Score=33.64 Aligned_cols=121 Identities=14% Similarity=0.148 Sum_probs=72.7
Q ss_pred CCCceEEEEe---c----CCcEEEEeeCCCeEEEEEcCC---------------CceeEEEEeCCCCCCcceEEEEcC-C
Q 036585 173 ISDANVVKFS---N----DGRLMLLTTMEGHIHVLDSFR---------------GTLLSTYNVKPVSRNSTLEASFSP-E 229 (304)
Q Consensus 173 ~~~v~~~~~~---~----~~~~l~~~~~dg~i~~~d~~~---------------~~~~~~~~~~~~~~~~i~~~~~s~-~ 229 (304)
..+|..|+|. . ...+|++-. ...+.|+...- ..++..+........+...++|+| +
T Consensus 79 ~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 79 GSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 3567777776 2 123444443 34566665111 123334443333456778899999 5
Q ss_pred CcEEEEecCCCcEEEEecCCCc-----eeeeeeccCCCC----------ceEEeCCCCcEEEEecCc-eEEeccCCcccc
Q 036585 230 GMFVISGSGDGSVHAWSVRSGK-----EVASWMSFDTEP----------PVIKWAPGSLMFVTGSSE-LSFWIPDLSKLG 293 (304)
Q Consensus 230 ~~~l~~~~~dg~i~v~d~~~~~-----~~~~~~~~~~~i----------~~~~~~~~~~~l~s~~~d-~~iw~~~~~~~~ 293 (304)
.+.||..+..|...||++.... .+.....+.+.+ ..+.|.++...|+.++.. +.+++++.....
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~ 237 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQT 237 (765)
T ss_pred cceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCCCCcc
Confidence 5689999999999999992211 111111112222 378898887777777777 888888776553
Q ss_pred c
Q 036585 294 A 294 (304)
Q Consensus 294 ~ 294 (304)
.
T Consensus 238 ~ 238 (765)
T PF10214_consen 238 E 238 (765)
T ss_pred c
Confidence 3
No 487
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=89.79 E-value=9.3 Score=30.80 Aligned_cols=109 Identities=11% Similarity=0.150 Sum_probs=50.9
Q ss_pred cCcEEEEeeCCC-----eEEEEecCCcce---eeeecccccce--eEEEEccCCCeEEEEecC--CCCCceEEEEccCce
Q 036585 26 VGIYLVTASDDE-----SIRLYDVTAATC---LKTINSKKYGV--DLVCFTSHPTTVIYSSKN--GWDESLRLLSLHDNK 93 (304)
Q Consensus 26 ~~~~l~~~~~d~-----~i~vw~~~~~~~---~~~~~~~~~~v--~~~~~~~~~~~l~~~~~~--~~d~~i~vwd~~~~~ 93 (304)
++.+++.|+.++ .+..+|+.+.+- ...+..-..+. .+++ .-+++..+.|+.. .....+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~-~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSAC-YKDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEE-EECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 456667776542 466667665442 11111111111 1222 2256666666531 113467888888765
Q ss_pred eeee--cccccccEEEEEEcCCCCEEEEcccCC----eEEEEeCCccee
Q 036585 94 YSRY--FKGHHDRVVLLSLCSSKDCFISGSLDR----TVLLWDQRAEKC 136 (304)
Q Consensus 94 ~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~ 136 (304)
-... +.. ...........++++.+.|+.++ .+..||+++.+-
T Consensus 151 W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 151 WFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred eeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 3221 211 11111222223566777776653 245677766543
No 488
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=89.76 E-value=10 Score=31.27 Aligned_cols=151 Identities=22% Similarity=0.171 Sum_probs=81.4
Q ss_pred eEEEEecCCCCCceEEEEccCceeeeecccc--cccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecccee
Q 036585 71 TVIYSSKNGWDESLRLLSLHDNKYSRYFKGH--HDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAA 148 (304)
Q Consensus 71 ~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 148 (304)
.++++.. +|.|.-.|..+++.+.....- ...+..-.+..+|+ ++.++.++.++.+|.++++......... . .
T Consensus 70 ~v~~~~~---~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~-~ 143 (370)
T COG1520 70 TVYVGTR---DGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG-S-P 143 (370)
T ss_pred eEEEecC---CCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC-C-e
Confidence 4444455 888888888888755433211 12222222333564 7778888888899988888777665443 0 0
Q ss_pred EecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcC
Q 036585 149 AYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP 228 (304)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~ 228 (304)
.+..-..-.++ .+...+.+|.+.-.|..+++..............+..--...
T Consensus 144 --------------------------~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~ 196 (370)
T COG1520 144 --------------------------YYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIA 196 (370)
T ss_pred --------------------------EEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceee
Confidence 00111122233 344444778888888888888777653221011111100112
Q ss_pred CCcEEEEecC--CCcEEEEecCCCceeee
Q 036585 229 EGMFVISGSG--DGSVHAWSVRSGKEVAS 255 (304)
Q Consensus 229 ~~~~l~~~~~--dg~i~v~d~~~~~~~~~ 255 (304)
++ .++.+.. ++.+.-.|..++.....
T Consensus 197 ~~-~vy~~~~~~~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 197 SG-TVYVGSDGYDGILYALNAEDGTLKWS 224 (370)
T ss_pred cc-eEEEecCCCcceEEEEEccCCcEeee
Confidence 23 4444444 55667777777766544
No 489
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=89.74 E-value=4 Score=37.29 Aligned_cols=85 Identities=15% Similarity=0.180 Sum_probs=56.0
Q ss_pred cEEEEeeCCCeEEEEEcCCCceeEE-EEeCCCCCCcceEEEEcCCCcEEEE-ecCCC-----cEEEEecCCC-ceeeeee
Q 036585 186 RLMLLTTMEGHIHVLDSFRGTLLST-YNVKPVSRNSTLEASFSPEGMFVIS-GSGDG-----SVHAWSVRSG-KEVASWM 257 (304)
Q Consensus 186 ~~l~~~~~dg~i~~~d~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~-~~~dg-----~i~v~d~~~~-~~~~~~~ 257 (304)
++..+....+.|.+-|......... +. ...++..-+|||||++|+- .+.++ .|++-|+.+. ..+-.+.
T Consensus 320 kiAfv~~~~~~L~~~D~dG~n~~~ve~~----~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ 395 (912)
T TIGR02171 320 KLAFRNDVTGNLAYIDYTKGASRAVEIE----DTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLP 395 (912)
T ss_pred eEEEEEcCCCeEEEEecCCCCceEEEec----CCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEee
Confidence 4444443446888888766555443 43 6788889999999999987 34333 4899999753 3344555
Q ss_pred ccCCCCceEEeCCCCcE
Q 036585 258 SFDTEPPVIKWAPGSLM 274 (304)
Q Consensus 258 ~~~~~i~~~~~~~~~~~ 274 (304)
-....|..-...++|..
T Consensus 396 ve~aaiprwrv~e~gdt 412 (912)
T TIGR02171 396 VENAAIPRWRVLENGDT 412 (912)
T ss_pred cccccccceEecCCCCe
Confidence 55667776666776653
No 490
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=89.70 E-value=16 Score=33.50 Aligned_cols=71 Identities=14% Similarity=0.111 Sum_probs=51.0
Q ss_pred CCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEE----EeC--------C----CCCCcceEEEEcCCCcEEEEe
Q 036585 173 ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY----NVK--------P----VSRNSTLEASFSPEGMFVISG 236 (304)
Q Consensus 173 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~----~~~--------~----~~~~~i~~~~~s~~~~~l~~~ 236 (304)
...|.++....-+..++....||+|.++|-.+.+.+... ... . ....++..++|||.+.-++.-
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 456777887778889999999999999998777555444 100 0 011134458899999888888
Q ss_pred cCCCcEE
Q 036585 237 SGDGSVH 243 (304)
Q Consensus 237 ~~dg~i~ 243 (304)
..+|.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 8888865
No 491
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=89.46 E-value=8.8 Score=30.19 Aligned_cols=76 Identities=13% Similarity=0.181 Sum_probs=43.8
Q ss_pred CCceEEEEecCCcEEEEee------CCCeEEEEEcCCCceeEEEEeC-CCCCCcceEEEEcC-CC-cEEEEec-CCC--c
Q 036585 174 SDANVVKFSNDGRLMLLTT------MEGHIHVLDSFRGTLLSTYNVK-PVSRNSTLEASFSP-EG-MFVISGS-GDG--S 241 (304)
Q Consensus 174 ~~v~~~~~~~~~~~l~~~~------~dg~i~~~d~~~~~~~~~~~~~-~~~~~~i~~~~~s~-~~-~~l~~~~-~dg--~ 241 (304)
+.|+.+.|..+.+.++.|. ....+..||+.+......-... ..-.++++.+.+.. |+ ++.++|. .++ .
T Consensus 37 G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~ 116 (281)
T PF12768_consen 37 GTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTF 116 (281)
T ss_pred EEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCce
Confidence 5789999987777777664 3456888998776532221100 12346777777643 33 3444443 333 4
Q ss_pred EEEEecCC
Q 036585 242 VHAWSVRS 249 (304)
Q Consensus 242 i~v~d~~~ 249 (304)
|..||=.+
T Consensus 117 l~~~dGs~ 124 (281)
T PF12768_consen 117 LMKYDGSS 124 (281)
T ss_pred EEEEcCCc
Confidence 66676443
No 492
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=89.34 E-value=12 Score=31.53 Aligned_cols=32 Identities=28% Similarity=0.301 Sum_probs=25.6
Q ss_pred CCceEEEEecCCcEEEEeeCCCeEEEEEcCCC
Q 036585 174 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG 205 (304)
Q Consensus 174 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 205 (304)
..|..++..+..+.+++.+.+|.|.+|++..+
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 44888999998999999999999999999753
No 493
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=89.30 E-value=18 Score=33.37 Aligned_cols=115 Identities=12% Similarity=0.014 Sum_probs=71.6
Q ss_pred CCceEEEEecC-CcEEEEeeCCCeEEEEEcCCCc--eeEEEEeCCCCC----------CcceEEEEcCCCcEEEEecCCC
Q 036585 174 SDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGT--LLSTYNVKPVSR----------NSTLEASFSPEGMFVISGSGDG 240 (304)
Q Consensus 174 ~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~----------~~i~~~~~s~~~~~l~~~~~dg 240 (304)
.+...++|+|. .+.||+....|...||++.... ....+....... ..-..+.|.++-+.|+.++. .
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~ 224 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-S 224 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-C
Confidence 46678999984 4689999999999999992111 111111110111 22336889888888888864 4
Q ss_pred cEEEEecCCCceeeee--eccCCCCceEEeCCC--CcEEEEecCceEEeccCC
Q 036585 241 SVHAWSVRSGKEVASW--MSFDTEPPVIKWAPG--SLMFVTGSSELSFWIPDL 289 (304)
Q Consensus 241 ~i~v~d~~~~~~~~~~--~~~~~~i~~~~~~~~--~~~l~s~~~d~~iw~~~~ 289 (304)
.+.++|+++......+ ......|..+.-+|+ +..++-.+..+...+...
T Consensus 225 ~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 225 KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 5899999876553212 234467888888887 455555555554444433
No 494
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=88.68 E-value=12 Score=30.54 Aligned_cols=68 Identities=7% Similarity=-0.015 Sum_probs=31.5
Q ss_pred cCcEEEEeeCC-CeEEEEecCCc----ceeeeecccccceeEEEEccCCCeEEEEecCCC--------CCceEEEEccCc
Q 036585 26 VGIYLVTASDD-ESIRLYDVTAA----TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW--------DESLRLLSLHDN 92 (304)
Q Consensus 26 ~~~~l~~~~~d-~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~--------d~~i~vwd~~~~ 92 (304)
++++.+.|+.. ..+.++|+... ..+..+.... ........-+++..+.|+.... -..+..||..++
T Consensus 17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~-R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~ 95 (346)
T TIGR03547 17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGP-RNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKN 95 (346)
T ss_pred CCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCC-cccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCC
Confidence 45566656543 35666775321 2222222111 1111122336667777765210 135777888776
Q ss_pred ee
Q 036585 93 KY 94 (304)
Q Consensus 93 ~~ 94 (304)
+-
T Consensus 96 ~W 97 (346)
T TIGR03547 96 SW 97 (346)
T ss_pred EE
Confidence 53
No 495
>PLN02153 epithiospecifier protein
Probab=88.62 E-value=12 Score=30.48 Aligned_cols=69 Identities=7% Similarity=0.084 Sum_probs=33.5
Q ss_pred cCcEEEEeeCC-----CeEEEEecCCccee--eeecc---cccceeEEEEccCCCeEEEEecCCC--------CCceEEE
Q 036585 26 VGIYLVTASDD-----ESIRLYDVTAATCL--KTINS---KKYGVDLVCFTSHPTTVIYSSKNGW--------DESLRLL 87 (304)
Q Consensus 26 ~~~~l~~~~~d-----~~i~vw~~~~~~~~--~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~--------d~~i~vw 87 (304)
++++++.|+.+ ..+.+||..+.+-. ..+.. ........+...+++.++.|+.... -..+.+|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 45667777753 24777887764322 22210 1111111222235566666664210 1257788
Q ss_pred EccCcee
Q 036585 88 SLHDNKY 94 (304)
Q Consensus 88 d~~~~~~ 94 (304)
|..+.+-
T Consensus 165 d~~~~~W 171 (341)
T PLN02153 165 NIADGKW 171 (341)
T ss_pred ECCCCeE
Confidence 8877653
No 496
>PRK13615 lipoprotein LpqB; Provisional
Probab=88.25 E-value=17 Score=31.84 Aligned_cols=139 Identities=9% Similarity=-0.007 Sum_probs=77.5
Q ss_pred EEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCC
Q 036585 106 VLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDG 185 (304)
Q Consensus 106 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 185 (304)
.+++.++++..++....++.+.++...... ..... ...++.-.|.++|
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~~~-~~~~~-------------------------------~~~Lt~PS~d~~g 384 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGDRDA-VLLDT-------------------------------RPGLVAPSLDAQG 384 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCCCcc-eeecc-------------------------------CCccccCcCcCCC
Confidence 678889999988887777777777554111 11111 1124445666666
Q ss_pred cEEEEeeCCCeEEEEEcC-CCceeEEEEeCCCCCCcceEEEEcCCCcEEEEec---CCCcEEEEecC--CCc--ee----
Q 036585 186 RLMLLTTMEGHIHVLDSF-RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS---GDGSVHAWSVR--SGK--EV---- 253 (304)
Q Consensus 186 ~~l~~~~~dg~i~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~v~d~~--~~~--~~---- 253 (304)
.+.+.-.....++.... ++.. ......-.....|..+..|+||..++.-. ..+.|.|--+. .+. .+
T Consensus 385 -~vWtv~~g~~~~l~~~~~~G~~-~~v~v~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p 462 (557)
T PRK13615 385 -YVWSTPASDPRGLVAWGPDGVG-HPVAVSWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTP 462 (557)
T ss_pred -CEEEEeCCCceEEEEecCCCce-EEeeccccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeecc
Confidence 44444333333333332 2333 22232222446899999999998876643 23456653332 221 12
Q ss_pred eeeeccCCCCceEEeCCCCcEEEEe
Q 036585 254 ASWMSFDTEPPVIKWAPGSLMFVTG 278 (304)
Q Consensus 254 ~~~~~~~~~i~~~~~~~~~~~l~s~ 278 (304)
..+..-...+.++.|..++.+.+.+
T Consensus 463 ~~l~~~l~~v~sl~W~~~~~laVl~ 487 (557)
T PRK13615 463 LELLASPGTPLDATWVDELDVATLT 487 (557)
T ss_pred EEcccCcCcceeeEEcCCCEEEEEe
Confidence 1121123478999999999876655
No 497
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=88.23 E-value=1.5 Score=21.09 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=20.5
Q ss_pred EEEEeeCCCeEEEEEcCCCceeEEE
Q 036585 187 LMLLTTMEGHIHVLDSFRGTLLSTY 211 (304)
Q Consensus 187 ~l~~~~~dg~i~~~d~~~~~~~~~~ 211 (304)
.+++++.+|.+..+|.++|+....+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 5778888999999999998876543
No 498
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.12 E-value=16 Score=31.33 Aligned_cols=94 Identities=9% Similarity=-0.013 Sum_probs=53.0
Q ss_pred cEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecccee--EecCCCeEEEecCCCeEEEEecCCCCCceEEEE
Q 036585 104 RVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAA--AYDDQGLVFGYEKGPLDIFSVGGDISDANVVKF 181 (304)
Q Consensus 104 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 181 (304)
.|..+..++.|..++-.+.+|.+.++=.+.-.....+.-...... .+.-+..+ |.- ...-.+...+|
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~----------fts-s~~ltl~Qa~W 173 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERF----------FTS-STSLTLKQAAW 173 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeeccccee----------ecc-CCceeeeeccc
Confidence 577788899999999888888766654332222222221111110 11111111 111 11223556788
Q ss_pred ecCC---cEEEEeeCCCeEEEEEcCCCcee
Q 036585 182 SNDG---RLMLLTTMEGHIHVLDSFRGTLL 208 (304)
Q Consensus 182 ~~~~---~~l~~~~~dg~i~~~d~~~~~~~ 208 (304)
+|+. ..|+.-+.|..|++||+...+.+
T Consensus 174 HP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 174 HPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred cCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 8865 56777888999999998765444
No 499
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=88.06 E-value=15 Score=34.29 Aligned_cols=93 Identities=12% Similarity=0.166 Sum_probs=59.2
Q ss_pred ceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCC------cEEEEecCCCcEEEEecCC
Q 036585 176 ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG------MFVISGSGDGSVHAWSVRS 249 (304)
Q Consensus 176 v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~------~~l~~~~~dg~i~v~d~~~ 249 (304)
++.+.-.-+...++++-.+|.+..+..........+.........+.|+++.++. ++++.++.|+.++++.+..
T Consensus 540 ~~Iv~~avnr~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p 619 (1205)
T KOG1898|consen 540 VRIVKCAVNRRQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDP 619 (1205)
T ss_pred eEEEEEeecceEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecC
Confidence 3333333345567777777877777665443344443333456778888888865 6799999999999999986
Q ss_pred Cceeeee--eccCCCCceEEe
Q 036585 250 GKEVASW--MSFDTEPPVIKW 268 (304)
Q Consensus 250 ~~~~~~~--~~~~~~i~~~~~ 268 (304)
..++..+ ++-..++.++.+
T Consensus 620 ~d~l~~ls~q~l~~~~~s~~i 640 (1205)
T KOG1898|consen 620 SDCLQPLSVQGLSSPPESLCI 640 (1205)
T ss_pred cceEEEccccccCCCccceEE
Confidence 6655554 334444555444
No 500
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=88.02 E-value=15 Score=30.88 Aligned_cols=141 Identities=11% Similarity=0.064 Sum_probs=81.4
Q ss_pred CcEEEEeeCCCeEEEEecCCcc-----eeeeecccccceeEEEEcc-----CCCeEEEEecCCCCCceEEEEccCc--e-
Q 036585 27 GIYLVTASDDESIRLYDVTAAT-----CLKTINSKKYGVDLVCFTS-----HPTTVIYSSKNGWDESLRLLSLHDN--K- 93 (304)
Q Consensus 27 ~~~l~~~~~d~~i~vw~~~~~~-----~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~~~~d~~i~vwd~~~~--~- 93 (304)
.+.|++||..|.+|||+..... .+-+.+ -..+|..+..-+ +...|++-. -..+.+|.+... .
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaVLh----P~kl~vY~v~~~~g~~ 111 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAVLH----PRKLSVYSVSLVDGTV 111 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEEec----CCEEEEEEEEecCCCc
Confidence 5689999999999999986433 111111 235777776542 233555544 788999988321 1
Q ss_pred ------eeeeccccc--ccEEEEEEcC----C-CCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEec
Q 036585 94 ------YSRYFKGHH--DRVVLLSLCS----S-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYE 160 (304)
Q Consensus 94 ------~~~~~~~~~--~~v~~~~~~~----~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (304)
.+..+..|. .....+.+-| . ..++..-+.||.+.+|+-+.......+..
T Consensus 112 ~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~------------------ 173 (418)
T PF14727_consen 112 EHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD------------------ 173 (418)
T ss_pred ccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC------------------
Confidence 112222232 1223333322 2 35788889999999998665432222211
Q ss_pred CCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEc
Q 036585 161 KGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDS 202 (304)
Q Consensus 161 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~ 202 (304)
---...+.|.+.-..|++++.+..+.-|..
T Consensus 174 ------------~llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 174 ------------FLLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred ------------CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 011123667777777777777777777653
Done!