BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036586
(568 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FLN|A Chain A, Crystal Structure Of Plant Protease Deg2
pdb|4FLN|B Chain B, Crystal Structure Of Plant Protease Deg2
pdb|4FLN|C Chain C, Crystal Structure Of Plant Protease Deg2
Length = 539
Score = 464 bits (1195), Expect = e-131, Method: Compositional matrix adjust.
Identities = 225/462 (48%), Positives = 318/462 (68%), Gaps = 23/462 (4%)
Query: 123 MDAVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFIVGGRRVLTNAHSVEHHTQVKVKKRGS 182
++AVVKV+C HT P++SLPWQ++RQ++S+ S F++G ++LTNAH VEH TQVKVK+RG
Sbjct: 47 LNAVVKVYCTHTAPDYSLPWQKQRQFTSTGSAFMIGDGKLLTNAHCVEHDTQVKVKRRGD 106
Query: 183 DTKYLATVLSIGTECDIALLTVKDDEFWEGVSPVEFGDLPALQDAVTVVGYPIGGDTISV 242
D KY+A VL G +CDIALL+V+ ++FW+G P+ G LP LQD+VTVVGYP+GGDTISV
Sbjct: 107 DRKYVAKVLVRGVDCDIALLSVESEDFWKGAEPLRLGHLPRLQDSVTVVGYPLGGDTISV 166
Query: 243 TSGVVSRMEILSYVHGSTELLGL------------------QGKCVGIAFQSLKNDDVEN 284
T GVVSR+E+ SY HGS++LLG+ QG+C+G+AFQ ++++ EN
Sbjct: 167 TKGVVSRIEVTSYAHGSSDLLGIQIDAAINPGNSGGPAFNDQGECIGVAFQVYRSEETEN 226
Query: 285 IGYVIPTPVIIHFIQDYEKNGAYTGFPILGVEWQKMENPDLRISMGMRPGQKGVRIRRIE 344
IGYVIPT V+ HF+ DYE+NG YTG+P LGV QK+ENP LR + + P +GV +RR+E
Sbjct: 227 IGYVIPTTVVSHFLTDYERNGKYTGYPCLGVLLQKLENPALRECLKV-PTNEGVLVRRVE 285
Query: 345 PTAPESHVLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAVVKVLRNS 404
PT+ S VLK D+I+SFD + + +GTVPFR ERI F YL+SQK+ GD A + ++R
Sbjct: 286 PTSDASKVLKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRAG 345
Query: 405 EVHEFNIKLSTHKRLIPAHINGRPPSYYIIAGFVFTAVTAPYLRSEYGKDYEFDAPVKLL 464
E + + L L+P HI+G PSY I+AG VFT ++ P + E E +KLL
Sbjct: 346 EHKKVQVVLRPRVHLVPYHIDGGQPSYIIVAGLVFTPLSEPLIEEE----CEDTIGLKLL 401
Query: 465 DKLLHAMAQSVDEQIVVVSQVLVADINIGYEEIVNTQVLALNGKPVQNLKSLADMVESSE 524
K +++A+ EQIV++SQVL ++NIGYE++ N QVL NG P++N+ LA +++ +
Sbjct: 402 TKARYSVARFRGEQIVILSQVLANEVNIGYEDMNNQQVLKFNGIPIRNIHHLAHLIDMCK 461
Query: 525 DEFLKFDLEYQQIVVLKSKTAKEATSDILATHCIPSAMSGDL 566
D++L F+ E + VL+ + + A+ IL + IPS S DL
Sbjct: 462 DKYLVFEFEDNYVAVLEREASNSASLCILKDYGIPSERSADL 503
>pdb|3NUM|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 332
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 121/279 (43%), Gaps = 53/279 (18%)
Query: 131 CVHTEPNFSLPWQRKRQYSSSSSGFIVG-GRRVLTNAHSVEHHTQVKVKKRGSDTKYLAT 189
VH E LP+ ++ +S SGFIV ++TNAH V + +VKV+ + T Y A
Sbjct: 27 VVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGAT-YEAK 85
Query: 190 VLSIGTECDIALLTV------------KDDEFWEGVSPVEFGDLPALQDAVT---VVGYP 234
+ + + DIAL+ + + E G V G +LQ+ VT V
Sbjct: 86 IKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQ 145
Query: 235 IGGDTISVTSGVVSRME---ILSYVHGSTELLGLQGKCVGIAFQSLKNDDVENIGYVIPT 291
GG + + + + ++ I++Y + L+ L G+ +GI +LK I + IP+
Sbjct: 146 RGGKELGLRNSDMDYIQTDAIINYGNAGGPLVNLDGEVIGI--NTLKV--TAGISFAIPS 201
Query: 292 PVIIHFI---QDYEKNG------AYTGFPILGVEWQKMEN--------PDLRISMGMRPG 334
I F+ D + G Y G ++ + K + PD+ IS
Sbjct: 202 DKIKKFLTESHDRQAKGKAITKKKYIGIRMMSLTSSKAKELKDRHRDFPDV-IS------ 254
Query: 335 QKGVRIRRIEPTAP-ESHVLKPSDIILSFDGIDI--AND 370
G I + P P E+ LK +D+I+S +G + AND
Sbjct: 255 --GAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSAND 291
>pdb|3NZI|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 334
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 121/279 (43%), Gaps = 53/279 (18%)
Query: 131 CVHTEPNFSLPWQRKRQYSSSSSGFIVG-GRRVLTNAHSVEHHTQVKVKKRGSDTKYLAT 189
VH E LP+ ++ +S SGFIV ++TNAH V + +VKV+ + T Y A
Sbjct: 27 VVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGAT-YEAK 85
Query: 190 VLSIGTECDIALLTV------------KDDEFWEGVSPVEFGDLPALQDAVT---VVGYP 234
+ + + DIAL+ + + E G V G +LQ+ VT V
Sbjct: 86 IKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQ 145
Query: 235 IGGDTISVTSGVVSRME---ILSYVHGSTELLGLQGKCVGIAFQSLKNDDVENIGYVIPT 291
GG + + + + ++ I++Y + L+ L G+ +GI +LK I + IP+
Sbjct: 146 RGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIGI--NTLKV--TAGISFAIPS 201
Query: 292 PVIIHFI---QDYEKNG------AYTGFPILGVEWQKMEN--------PDLRISMGMRPG 334
I F+ D + G Y G ++ + K + PD+ IS
Sbjct: 202 DKIKKFLTESHDRQAKGKAITKKKYIGIRMMSLTSSKAKELKDRHRDFPDV-IS------ 254
Query: 335 QKGVRIRRIEPTAP-ESHVLKPSDIILSFDGIDI--AND 370
G I + P P E+ LK +D+I+S +G + AND
Sbjct: 255 --GAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSAND 291
>pdb|3TJO|A Chain A, Htra1 Catalytic Domain, Mutationally Inactivated
pdb|3TJO|B Chain B, Htra1 Catalytic Domain, Mutationally Inactivated
pdb|3TJO|D Chain D, Htra1 Catalytic Domain, Mutationally Inactivated
Length = 231
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 24/189 (12%)
Query: 131 CVHTEPNFSLPWQRKRQYSSSSSGFIVG-GRRVLTNAHSVEHHTQVKVKKRGSDTKYLAT 189
VH E LP+ ++ +S SGFIV ++TNAH V + +VKV+ + T Y A
Sbjct: 44 VVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGAT-YEAK 102
Query: 190 VLSIGTECDIALLTV------------KDDEFWEGVSPVEFGDLPALQDAVT---VVGYP 234
+ + + DIAL+ + + E G V G +LQ+ VT V
Sbjct: 103 IKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQ 162
Query: 235 IGGDTISVTSGVVSRME---ILSYVHGSTELLGLQGKCVGIAFQSLKNDDVENIGYVIPT 291
GG + + + + ++ I++Y + L+ L G+ +GI +LK I + IP+
Sbjct: 163 RGGKELGLRNSDMDYIQTDAIINYGNAGGPLVNLDGEVIGI--NTLKV--TAGISFAIPS 218
Query: 292 PVIIHFIQD 300
I F+ +
Sbjct: 219 DKIKKFLTE 227
>pdb|3NWU|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
pdb|3NWU|B Chain B, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
pdb|3NWU|C Chain C, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 227
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 24/189 (12%)
Query: 131 CVHTEPNFSLPWQRKRQYSSSSSGFIVG-GRRVLTNAHSVEHHTQVKVKKRGSDTKYLAT 189
VH E LP+ ++ +S SGFIV ++TNAH V + +VKV+ + T Y A
Sbjct: 27 VVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGAT-YEAK 85
Query: 190 VLSIGTECDIALLTV------------KDDEFWEGVSPVEFGDLPALQDAVT---VVGYP 234
+ + + DIAL+ + + E G V G +LQ+ VT V
Sbjct: 86 IKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQ 145
Query: 235 IGGDTISVTSGVVSRME---ILSYVHGSTELLGLQGKCVGIAFQSLKNDDVENIGYVIPT 291
GG + + + + ++ I++Y + L+ L G+ +GI +LK I + IP+
Sbjct: 146 RGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIGI--NTLKV--TAGISFAIPS 201
Query: 292 PVIIHFIQD 300
I F+ +
Sbjct: 202 DKIKKFLTE 210
>pdb|3OTP|A Chain A, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|B Chain B, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|C Chain C, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|D Chain D, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|E Chain E, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|F Chain F, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
Length = 459
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 119/271 (43%), Gaps = 47/271 (17%)
Query: 130 FCVHTEPNFSLPW----------QRKRQYSSSSSGFIVGGRR--VLTNAHSVEHHTQVKV 177
FC P S P+ +++++ + SG I+ + V+TN H V++ T +KV
Sbjct: 56 FCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKV 115
Query: 178 KKRGSDTKYLATVLSIGTECDIALLTVKDDEFWEGVSPVEFGDLPALQ--DAVTVVGYPI 235
+ K+ A ++ DIAL+ +++ + ++ ++ D AL+ D +G P
Sbjct: 116 -QLSDGRKFDAKMVGKDPRSDIALIQIQN---PKNLTAIKMADSDALRVGDYTVAIGNPF 171
Query: 236 G-GDTISVTSGVVSRM-----------------EILSYVHGSTELLGLQGKCVGIAFQSL 277
G G+T VTSG+VS + ++ + L+ L G+ +GI L
Sbjct: 172 GLGET--VTSGIVSALGRSGLNAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAIL 229
Query: 278 KNDDVE-NIGYVIPTPVIIHFIQDYEKNGAYT--GFPILGVEWQKMENPDLRISMGMRPG 334
D IG+ IP+ ++ + + G I+G E N +L +M +
Sbjct: 230 APDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTEL----NSELAKAMKVD-A 284
Query: 335 QKGVRIRRIEPTAPESHV-LKPSDIILSFDG 364
Q+G + ++ P + + +K D+I S +G
Sbjct: 285 QRGAFVSQVLPNSSAAKAGIKAGDVITSLNG 315
>pdb|3MH4|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH4|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 119/271 (43%), Gaps = 47/271 (17%)
Query: 130 FCVHTEPNFSLPW----------QRKRQYSSSSSGFIVGGRR--VLTNAHSVEHHTQVKV 177
FC P S P+ +++++ + SG I+ + V+TN H V++ T +KV
Sbjct: 56 FCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKV 115
Query: 178 KKRGSDTKYLATVLSIGTECDIALLTVKDDEFWEGVSPVEFGDLPALQ--DAVTVVGYPI 235
+ K+ A ++ DIAL+ +++ + ++ ++ D AL+ D +G P
Sbjct: 116 -QLSDGRKFDAKMVGKDPRSDIALIQIQN---PKNLTAIKMADSDALRVGDYTVAIGNPF 171
Query: 236 G-GDTISVTSGVVSRM-----------------EILSYVHGSTELLGLQGKCVGIAFQSL 277
G G+T VTSG+VS + ++ + L+ L G+ +GI L
Sbjct: 172 GLGET--VTSGIVSALGRSGLNAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAIL 229
Query: 278 KNDDVE-NIGYVIPTPVIIHFIQDYEKNGAYTG--FPILGVEWQKMENPDLRISMGMRPG 334
D IG+ IP+ ++ + + G I+G E N +L +M +
Sbjct: 230 APDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTEL----NSELAKAMKV-DA 284
Query: 335 QKGVRIRRIEPTAPESHV-LKPSDIILSFDG 364
Q+G + ++ P + + +K D+I S +G
Sbjct: 285 QRGAFVSQVLPNSSAAKAGIKAGDVITSLNG 315
>pdb|3TJN|A Chain A, Htra1 Catalytic Domain, Apo Form
pdb|3TJN|B Chain B, Htra1 Catalytic Domain, Apo Form
pdb|3TJN|D Chain D, Htra1 Catalytic Domain, Apo Form
Length = 228
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 24/189 (12%)
Query: 131 CVHTEPNFSLPWQRKRQYSSSSSGFIVG-GRRVLTNAHSVEHHTQVKVKKRGSDTKYLAT 189
VH E LP+ ++ +S SGFIV ++TNAH V + +VKV+ + T Y A
Sbjct: 44 VVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGAT-YEAK 102
Query: 190 VLSIGTECDIALLTV------------KDDEFWEGVSPVEFGDLPALQDAVT---VVGYP 234
+ + + DIAL+ + + E G V G +LQ+ VT V
Sbjct: 103 IKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQ 162
Query: 235 IGGDTISVTSGVVSRME---ILSYVHGSTELLGLQGKCVGIAFQSLKNDDVENIGYVIPT 291
GG + + + + ++ I++Y + L+ L G+ +GI +LK I + IP+
Sbjct: 163 RGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIGI--NTLKV--TAGISFAIPS 218
Query: 292 PVIIHFIQD 300
I F+ +
Sbjct: 219 DKIKKFLTE 227
>pdb|4A8D|A Chain A, Degp Dodecamer With Bound Omp
pdb|4A8D|B Chain B, Degp Dodecamer With Bound Omp
pdb|4A8D|C Chain C, Degp Dodecamer With Bound Omp
pdb|4A8D|D Chain D, Degp Dodecamer With Bound Omp
pdb|4A8D|E Chain E, Degp Dodecamer With Bound Omp
pdb|4A8D|F Chain F, Degp Dodecamer With Bound Omp
pdb|4A8D|G Chain G, Degp Dodecamer With Bound Omp
pdb|4A8D|H Chain H, Degp Dodecamer With Bound Omp
pdb|4A8D|I Chain I, Degp Dodecamer With Bound Omp
pdb|4A8D|J Chain J, Degp Dodecamer With Bound Omp
pdb|4A8D|K Chain K, Degp Dodecamer With Bound Omp
pdb|4A8D|L Chain L, Degp Dodecamer With Bound Omp
Length = 448
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 119/271 (43%), Gaps = 47/271 (17%)
Query: 130 FCVHTEPNFSLPW----------QRKRQYSSSSSGFIVGGRR--VLTNAHSVEHHTQVKV 177
FC P S P+ +++++ + SG I+ + V+TN H V++ T +KV
Sbjct: 56 FCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKV 115
Query: 178 KKRGSDTKYLATVLSIGTECDIALLTVKDDEFWEGVSPVEFGDLPALQ--DAVTVVGYPI 235
+ K+ A ++ DIAL+ +++ + ++ ++ D AL+ D +G P
Sbjct: 116 -QLSDGRKFDAKMVGKDPRSDIALIQIQN---PKNLTAIKMADSDALRVGDYTVAIGNPF 171
Query: 236 G-GDTISVTSGVVSRM-----------------EILSYVHGSTELLGLQGKCVGIAFQSL 277
G G+T VTSG+VS + ++ + L+ L G+ +GI L
Sbjct: 172 GLGET--VTSGIVSALGRSGLNAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAIL 229
Query: 278 KNDDVE-NIGYVIPTPVIIHFIQDYEKNGAYT--GFPILGVEWQKMENPDLRISMGMRPG 334
D IG+ IP+ ++ + + G I+G E N +L +M +
Sbjct: 230 APDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTEL----NSELAKAMKVD-A 284
Query: 335 QKGVRIRRIEPTAPESHV-LKPSDIILSFDG 364
Q+G + ++ P + + +K D+I S +G
Sbjct: 285 QRGAFVSQVLPNSSAAKAGIKAGDVITSLNG 315
>pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH5|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH6|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 119/271 (43%), Gaps = 47/271 (17%)
Query: 130 FCVHTEPNFSLPW----------QRKRQYSSSSSGFIVGGRR--VLTNAHSVEHHTQVKV 177
FC P S P+ +++++ + SG I+ + V+TN H V++ T +KV
Sbjct: 56 FCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKV 115
Query: 178 KKRGSDTKYLATVLSIGTECDIALLTVKDDEFWEGVSPVEFGDLPALQ--DAVTVVGYPI 235
+ K+ A ++ DIAL+ +++ + ++ ++ D AL+ D +G P
Sbjct: 116 -QLSDGRKFDAKMVGKDPRSDIALIQIQN---PKNLTAIKMADSDALRVGDYTVAIGNPF 171
Query: 236 G-GDTISVTSGVVSRM-----------------EILSYVHGSTELLGLQGKCVGIAFQSL 277
G G+T VTSG+VS + ++ + L+ L G+ +GI L
Sbjct: 172 GLGET--VTSGIVSALGRSGLNAENYENFIQTDAAINRGNSGGALVNLNGELIGINTAIL 229
Query: 278 KNDDVE-NIGYVIPTPVIIHFIQDYEKNGAYTG--FPILGVEWQKMENPDLRISMGMRPG 334
D IG+ IP+ ++ + + G I+G E N +L +M +
Sbjct: 230 APDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTEL----NSELAKAMKV-DA 284
Query: 335 QKGVRIRRIEPTAPESHV-LKPSDIILSFDG 364
Q+G + ++ P + + +K D+I S +G
Sbjct: 285 QRGAFVSQVLPNSSAAKAGIKAGDVITSLNG 315
>pdb|2ZLE|A Chain A, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|B Chain B, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|C Chain C, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|E Chain E, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|F Chain F, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|G Chain G, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|H Chain H, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|I Chain I, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|J Chain J, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|K Chain K, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|L Chain L, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|M Chain M, Cryo-Em Structure Of Degp12OMP
Length = 448
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 119/271 (43%), Gaps = 47/271 (17%)
Query: 130 FCVHTEPNFSLPW----------QRKRQYSSSSSGFIVGGRR--VLTNAHSVEHHTQVKV 177
FC P S P+ +++++ + SG I+ + V+TN H V++ T +KV
Sbjct: 56 FCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKV 115
Query: 178 KKRGSDTKYLATVLSIGTECDIALLTVKDDEFWEGVSPVEFGDLPALQ--DAVTVVGYPI 235
+ K+ A ++ DIAL+ +++ + ++ ++ D AL+ D +G P
Sbjct: 116 -QLSDGRKFDAKMVGKDPRSDIALIQIQN---PKNLTAIKMADSDALRVGDYTVAIGNPF 171
Query: 236 G-GDTISVTSGVVSRM-----------------EILSYVHGSTELLGLQGKCVGIAFQSL 277
G G+T VTSG+VS + ++ + L+ L G+ +GI L
Sbjct: 172 GLGET--VTSGIVSALGRSGLNAENYENFIQTDAAINRGNSGGALVNLNGELIGINTAIL 229
Query: 278 KNDDVE-NIGYVIPTPVIIHFIQDYEKNGAYT--GFPILGVEWQKMENPDLRISMGMRPG 334
D IG+ IP+ ++ + + G I+G E N +L +M +
Sbjct: 230 APDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTEL----NSELAKAMKVD-A 284
Query: 335 QKGVRIRRIEPTAPESHV-LKPSDIILSFDG 364
Q+G + ++ P + + +K D+I S +G
Sbjct: 285 QRGAFVSQVLPNSSAAKAGIKAGDVITSLNG 315
>pdb|3MH7|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 116/271 (42%), Gaps = 47/271 (17%)
Query: 130 FCVHTEPNFSLPW----------QRKRQYSSSSSGFIVGGRR--VLTNAHSVEHHTQVKV 177
FC P S P+ +++++ + SG I+ + V+TN H V++ T +KV
Sbjct: 56 FCQEGSPFQSSPFCQGGQGGNGGGQQQKFXALGSGVIIDADKGYVVTNNHVVDNATVIKV 115
Query: 178 KKRGSDTKYLATVLSIGTECDIALLTVKDDEFWEGVSPVEFGDLPALQ--DAVTVVGYPI 235
+ K+ A + DIAL+ +++ + ++ ++ D AL+ D +G P
Sbjct: 116 QLS-DGRKFDAKXVGKDPRSDIALIQIQN---PKNLTAIKXADSDALRVGDYTVAIGNPF 171
Query: 236 G-GDTISVTSGVVSRM-----------------EILSYVHGSTELLGLQGKCVGIAFQSL 277
G G+T VTSG+VS + ++ + L+ L G+ +GI L
Sbjct: 172 GLGET--VTSGIVSALGRSGLNAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAIL 229
Query: 278 KNDDVE-NIGYVIPTPVIIHFI-QDYEKNGAYTG-FPILGVEWQKMENPDLRISMGMRPG 334
D IG+ IP+ + + Q E G I G E N +L + +
Sbjct: 230 APDGGNIGIGFAIPSNXVKNLTSQXVEYGQVKRGELGIXGTEL----NSELAKAXKVD-A 284
Query: 335 QKGVRIRRIEPTAPESHV-LKPSDIILSFDG 364
Q+G + ++ P + + +K D+I S +G
Sbjct: 285 QRGAFVSQVLPNSSAAKAGIKAGDVITSLNG 315
>pdb|1KY9|A Chain A, Crystal Structure Of Degp (Htra)
pdb|1KY9|B Chain B, Crystal Structure Of Degp (Htra)
pdb|3OU0|A Chain A, Re-Refined 3cs0
Length = 448
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 116/271 (42%), Gaps = 47/271 (17%)
Query: 130 FCVHTEPNFSLPW----------QRKRQYSSSSSGFIVGGRR--VLTNAHSVEHHTQVKV 177
FC P S P+ +++++ + SG I+ + V+TN H V++ T +KV
Sbjct: 56 FCQEGSPFQSSPFCQGGQGGNGGGQQQKFXALGSGVIIDADKGYVVTNNHVVDNATVIKV 115
Query: 178 KKRGSDTKYLATVLSIGTECDIALLTVKDDEFWEGVSPVEFGDLPALQ--DAVTVVGYPI 235
+ K+ A + DIAL+ +++ + ++ ++ D AL+ D +G P
Sbjct: 116 QLS-DGRKFDAKXVGKDPRSDIALIQIQN---PKNLTAIKXADSDALRVGDYTVAIGNPF 171
Query: 236 G-GDTISVTSGVVSRM-----------------EILSYVHGSTELLGLQGKCVGIAFQSL 277
G G+T VTSG+VS + ++ + L+ L G+ +GI L
Sbjct: 172 GLGET--VTSGIVSALGRSGLNAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAIL 229
Query: 278 KNDDVE-NIGYVIPTPVIIHFI-QDYEKNGAYTG-FPILGVEWQKMENPDLRISMGMRPG 334
D IG+ IP+ + + Q E G I G E N +L + +
Sbjct: 230 APDGGNIGIGFAIPSNXVKNLTSQXVEYGQVKRGELGIXGTEL----NSELAKAXKVD-A 284
Query: 335 QKGVRIRRIEPTAPESHV-LKPSDIILSFDG 364
Q+G + ++ P + + +K D+I S +G
Sbjct: 285 QRGAFVSQVLPNSSAAKAGIKAGDVITSLNG 315
>pdb|3CS0|A Chain A, Crystal Structure Of Degp24
Length = 448
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 116/271 (42%), Gaps = 47/271 (17%)
Query: 130 FCVHTEPNFSLPW----------QRKRQYSSSSSGFIVGGRR--VLTNAHSVEHHTQVKV 177
FC P S P+ +++++ + SG I+ + V+TN H V++ T +KV
Sbjct: 56 FCQEGSPFQSSPFCQGGQGGNGGGQQQKFXALGSGVIIDADKGYVVTNNHVVDNATVIKV 115
Query: 178 KKRGSDTKYLATVLSIGTECDIALLTVKDDEFWEGVSPVEFGDLPALQ--DAVTVVGYPI 235
+ K+ A + DIAL+ +++ + ++ ++ D AL+ D +G P
Sbjct: 116 QLS-DGRKFDAKXVGKDPRSDIALIQIQN---PKNLTAIKXADSDALRVGDYTVAIGNPF 171
Query: 236 G-GDTISVTSGVVSRM-----------------EILSYVHGSTELLGLQGKCVGIAFQSL 277
G G+T VTSG+VS + ++ + L+ L G+ +GI L
Sbjct: 172 GLGET--VTSGIVSALGRSGLNAENYENFIQTDAAINRGNSGGALVNLNGELIGINTAIL 229
Query: 278 KNDDVE-NIGYVIPTPVIIHFI-QDYEKNGAYTG-FPILGVEWQKMENPDLRISMGMRPG 334
D IG+ IP+ + + Q E G I G E N +L + +
Sbjct: 230 APDGGNIGIGFAIPSNXVKNLTSQXVEYGQVKRGELGIXGTEL----NSELAKAXKVD-A 284
Query: 335 QKGVRIRRIEPTAPESHV-LKPSDIILSFDG 364
Q+G + ++ P + + +K D+I S +G
Sbjct: 285 QRGAFVSQVLPNSSAAKAGIKAGDVITSLNG 315
>pdb|1L1J|A Chain A, Crystal Structure Of The Protease Domain Of An Atp-
Independent Heat Shock Protease Htra
pdb|1L1J|B Chain B, Crystal Structure Of The Protease Domain Of An Atp-
Independent Heat Shock Protease Htra
Length = 239
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 88/214 (41%), Gaps = 40/214 (18%)
Query: 119 AVPSMDAVVKVFCVHTEPNFS---------LPWQRKRQYSSSSSGFIVGGR-RVLTNAHS 168
AV +D V V +P F LP +RQ +S SGFI +LTN H
Sbjct: 16 AVVKIDVVKTVKTSFFDPYFEQFFKKWFGELPPGFERQVASLGSGFIFDPEGYILTNYHV 75
Query: 169 VEHHTQVKVKKRGSDTKYLATVLSIGTECDIALLTVK--DDEFWEGVSPVEFGDLPALQ- 225
V + V +KY A + E DIA++ +K D +F +EFGD ++
Sbjct: 76 VGGADNITVTML-DGSKYDAEYIGGDEELDIAVIKIKASDKKF----PYLEFGDSDKVKI 130
Query: 226 -DAVTVVGYPIGGDTISVTSGVVS-------RMEILSYVHGSTE-------------LLG 264
+ +G P+G +VT GVVS + + Y G + LL
Sbjct: 131 GEWAIAIGNPLGFQH-TVTVGVVSATNRRIPKPDGSGYYVGLIQTDAAINPGNSGGPLLN 189
Query: 265 LQGKCVGIAFQSLKNDDVENIGYVIPTPVIIHFI 298
+ G+ +GI + + N+G+ IP + F+
Sbjct: 190 IHGEVIGINTAIVNPQEAVNLGFAIPINTVKKFL 223
>pdb|3K6Y|A Chain A, Crystal Structure Of Rv3671c Protease From M.
Tuberculosis, Active Form
Length = 237
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 153 SGFIVGGRRVLTNAHSVEHHTQVKVKKRGSDTKYLATVLSIGTECDIALLTVKDDEFWEG 212
+GF++ RV+TNAH V V V D + ATV+S D+A+L V
Sbjct: 61 TGFVISPDRVMTNAHVVAGSNNVTVYA--GDKPFEATVVSYDPSVDVAILAVPHLPPPP- 117
Query: 213 VSPVEFGDLPALQDA-VTVVGYPIGGD 238
+ F PA A V V+GYP GG+
Sbjct: 118 ---LVFAAEPAKTGADVVVLGYPGGGN 141
>pdb|2VID|A Chain A, Serine Protease Splb From Staphylococcus Aureus At 1.8a
Resolution
pdb|2VID|B Chain B, Serine Protease Splb From Staphylococcus Aureus At 1.8a
Resolution
Length = 204
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 81/178 (45%), Gaps = 28/178 (15%)
Query: 151 SSSGFIVGGRRVLTNAHSVEHH------TQVKVKKRGSDTKY-LATVLSIGTECDIALLT 203
S++GF+VG +LTN H +++ T +G+ Y + +++ + D++++
Sbjct: 23 SATGFVVGKNTILTNKHVSKNYKVGDRITAHPNSDKGNGGIYSIKKIINYPGKEDVSVIQ 82
Query: 204 VKDD---------EFWEGVSPVEFGDLPALQDAVTVVGYPIGGDTISV---TSGVVSRME 251
V++ F + V+P ++ + + V+GYP V ++G V +E
Sbjct: 83 VEERAIERGPKGFNFNDNVTPFKYAAGAKAGERIKVIGYPHPYKNKYVLYESTGPVMSVE 142
Query: 252 ILSYVHGS--------TELLGLQGKCVGIAFQS-LKNDDVENIGYVIPTPVIIHFIQD 300
S V+ + + +L + VGI F S +KNDD N V TP I FI +
Sbjct: 143 GSSIVYSAHTESGNSGSPVLNSNNELVGIHFASDVKNDDNRNAYGVYFTPEIKKFIAE 200
>pdb|2L97|A Chain A, Solution Structure Of Htra Pdz Domain From Streptococcus
Pneumoniae
Length = 134
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 282 VENIGYVIPTPVIIHFIQDYEKNGAYTGFPILGVEWQKMEN---PDLRISMGMRPGQKGV 338
+E +G+ IP I+ I+ EKNG T P LG++ + N D+R GV
Sbjct: 1 MEGLGFAIPANDAINIIEQLEKNGKVT-RPALGIQMVNLSNVSTSDIRRLNIPSNVTSGV 59
Query: 339 RIRRIEPTAPESHVLKPSDIILSFDGIDIA 368
+R ++ P + L+ D+I D +IA
Sbjct: 60 IVRSVQSNMPANGHLEKYDVITKVDDKEIA 89
>pdb|3K6Z|A Chain A, Crystal Structure Of Rv3671c Protease, Inactive Form
pdb|3K6Z|B Chain B, Crystal Structure Of Rv3671c Protease, Inactive Form
Length = 219
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 153 SGFIVGGRRVLTNAHSVEHHTQVKVKKRGSDTKYLATVLSIGTECDIALLTVKDDEFWEG 212
+GF++ RV+TNAH V V V D + ATV+S D+A+L V
Sbjct: 43 TGFVISPDRVMTNAHVVAGSNNVTVYA--GDKPFEATVVSYDPSVDVAILAVPHLPPPP- 99
Query: 213 VSPVEFGDLPALQDA-VTVVGYPIGGD 238
+ F PA A V V+GYP GG+
Sbjct: 100 ---LVFAAEPAKTGADVVVLGYPGGGN 123
>pdb|3LT3|A Chain A, Crystal Structure Of Rv3671c From M. Tuberculosis H37rv,
Ser343ala Mutant, Inactive Form
pdb|3LT3|B Chain B, Crystal Structure Of Rv3671c From M. Tuberculosis H37rv,
Ser343ala Mutant, Inactive Form
Length = 217
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 153 SGFIVGGRRVLTNAHSVEHHTQVKVKKRGSDTKYLATVLSIGTECDIALLTVKDDEFWEG 212
+GF++ RV+TNAH V V V D + ATV+S D+A+L V
Sbjct: 41 TGFVISPDRVMTNAHVVAGSNNVTVYA--GDKPFEATVVSYDPSVDVAILAVPHLPPPP- 97
Query: 213 VSPVEFGDLPALQDA-VTVVGYPIGGD 238
+ F PA A V V+GYP GG+
Sbjct: 98 ---LVFAAEPAKTGADVVVLGYPGGGN 121
>pdb|3CH8|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 67/167 (40%), Gaps = 20/167 (11%)
Query: 331 MRPGQKGVRIRRIEPTAPESHVLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQK 390
RP G+ + R++P P S +L+P D I+ +G N HG+ + S L + +
Sbjct: 20 FRPDDDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFIN-----IEHGQAV--SLLKTFQ 72
Query: 391 YTGDSAVVKVLRNSEVHEFNIKL-----STHKRLIPAHIN--GRPPSYYIIAGFVFTAVT 443
T + +V+ + N E +++ S +P ++ P+ +I+ + +
Sbjct: 73 NTVELIIVREVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAATPTSLLISWDAYRELP 132
Query: 444 APYLRSEYGKD------YEFDAPVKLLDKLLHAMAQSVDEQIVVVSQ 484
Y R YG+ EF P + + VD I V +
Sbjct: 133 VSYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAH 179
>pdb|2W7S|A Chain A, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7S|B Chain B, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7S|C Chain C, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7S|D Chain D, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7U|A Chain A, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|2W7U|B Chain B, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|2W7U|C Chain C, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|2W7U|D Chain D, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|3UFA|A Chain A, Crystal Structure Of The Staphylococcal Serine Protease
Spla In Complex With A Specific Phosphonate Inhibitor
pdb|3UFA|B Chain B, Crystal Structure Of The Staphylococcal Serine Protease
Spla In Complex With A Specific Phosphonate Inhibitor
Length = 200
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 67/146 (45%), Gaps = 19/146 (13%)
Query: 171 HHTQVKVKKRGSDTKYLATVLSIGTECDIALLTVKDD-----EFWEGVSPVEFGDLPALQ 225
HH+ K +G + ++ + D+A++ V + F + VS +F D ++
Sbjct: 54 HHSS---KGKGGGNYDVKDIVEYPGKEDLAIVHVHETSTEGLNFNKNVSYTKFADGAKVK 110
Query: 226 DAVTVVGYPIGGDT---ISVTSGVVSR-----MEILSYV---HGSTELLGLQGKCVGIAF 274
D ++V+GYP G T + ++G ++ ME +Y + + +L + + +GI +
Sbjct: 111 DRISVIGYPKGAQTKYKMFESTGTINHISGTFMEFDAYAQPGNSGSPVLNSKHELIGILY 170
Query: 275 QSLKNDDVENIGYVIPTPVIIHFIQD 300
D+ E V TP + FIQ+
Sbjct: 171 AGSGKDESEKNFGVYFTPQLKEFIQN 196
>pdb|2QBW|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 331 MRPGQKGVRIRRIEPTAPESHVLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQK 390
RP G+ + R++P P S +L+P D I+ +G N HG+ + S L + +
Sbjct: 19 FRPDDDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFIN-----IEHGQAV--SLLKTFQ 71
Query: 391 YTGDSAVVKVLRNSEVHEFNIKL 413
T + +V+ + N E +++
Sbjct: 72 NTVELIIVREVGNGAKQEIRVRV 94
>pdb|2AS9|A Chain A, Functional And Structural Characterization Of Spl
Proteases From Staphylococcus Aureus
pdb|2AS9|B Chain B, Functional And Structural Characterization Of Spl
Proteases From Staphylococcus Aureus
Length = 210
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 35/177 (19%), Positives = 75/177 (42%), Gaps = 27/177 (15%)
Query: 152 SSGFIVGGRRVLTNAH-SVEHHTQVKVKKRGSDTKYLATVLSIGT------ECDIALLTV 204
++GF++G ++TN H S ++ ++ + K + I + + DI+++ +
Sbjct: 25 ATGFVIGKNTIITNKHVSKDYKVGDRITAHPNGDKGNGGIYKIKSISDYPGDEDISVMNI 84
Query: 205 KDD---------EFWEGVSPVEFGDLPALQDAVTVVGYPIGGDTISV---TSGVVSRME- 251
++ F E V F + D + V+GYP+ ++G + R++
Sbjct: 85 EEQAVERGPKGFNFNENVQAFNFAKDAKVDDKIKVIGYPLPAQNSFKQFESTGTIKRIKD 144
Query: 252 -ILSY------VHGSTELLGLQGKCVGIAFQSLKNDDVENIGYVIPTPVIIHFIQDY 301
IL++ + + +L + +G+ + + E G V TP I FIQ +
Sbjct: 145 NILNFDAYIEPGNSGSPVLNSNNEVIGVVYGGIGKIGSEYNGAVYFTPQIKDFIQKH 201
>pdb|2H3L|A Chain A, Crystal Structure Of Erbin Pdz
pdb|2H3L|B Chain B, Crystal Structure Of Erbin Pdz
pdb|1N7T|A Chain A, Erbin Pdz Domain Bound To A Phage-Derived Peptide
Length = 103
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 331 MRPGQKGVRIRRIEPTAPESHVLKPSDIILSFDGIDIAN 369
RP G+ + R++P P S +L+P D I+ +G N
Sbjct: 38 FRPDDDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFIN 76
>pdb|1MFG|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
pdb|1MFL|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
Length = 95
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 331 MRPGQKGVRIRRIEPTAPESHVLKPSDIILSFDGIDIAN 369
RP G+ + R++P P S +L+P D I+ +G N
Sbjct: 30 FRPDDDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFIN 68
>pdb|1LCY|A Chain A, Crystal Structure Of The Mitochondrial Serine Protease
Htra2
Length = 325
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 102/245 (41%), Gaps = 40/245 (16%)
Query: 150 SSSSGFIVGGR-RVLTNAHSVEHHTQVKVKKRGSDTKYLATVLSIGTECDIALLTVKDDE 208
S+ SGF+V ++TNAH V +V+V+ DT Y A V ++ DIA L ++ E
Sbjct: 47 SNGSGFVVAADGLIVTNAHVVADRRRVRVRLLSGDT-YEAVVTAVDPVADIATLRIQTKE 105
Query: 209 FWEGVSPVEFGDLPALQDAVTVVGYPIGGDTISVTSGVVSRME----------------- 251
+ D+ + V +G P ++TSG+VS +
Sbjct: 106 PLPTLPLGRSADVRQ-GEFVVAMGSPFALQN-TITSGIVSSAQRPARDLGLPQTNVEYIQ 163
Query: 252 ---ILSYVHGSTELLGLQGKCVGIAFQSLKNDDVENIGYVIPTPVIIHFIQDYEKNGAYT 308
+ + + L+ L G+ +G+ + I + IP+ + F+ EK + +
Sbjct: 164 TDAAIDFGNAGGPLVNLDGEVIGVNTMKV----TAGISFAIPSDRLREFLHRGEKKNSSS 219
Query: 309 GFP-----ILGVEWQKMENPDLRISMGMR-PG----QKGVRIRRIEPTAPESHV-LKPSD 357
G +GV + +P + + +R P Q GV I ++ +P L+P D
Sbjct: 220 GISGSQRRYIGVMMLTL-SPSILAELQLREPSFPDVQHGVLIHKVILGSPAHRAGLRPGD 278
Query: 358 IILSF 362
+IL+
Sbjct: 279 VILAI 283
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,407,131
Number of Sequences: 62578
Number of extensions: 636214
Number of successful extensions: 1517
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1495
Number of HSP's gapped (non-prelim): 34
length of query: 568
length of database: 14,973,337
effective HSP length: 104
effective length of query: 464
effective length of database: 8,465,225
effective search space: 3927864400
effective search space used: 3927864400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)