BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036588
(541 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 187/578 (32%), Positives = 270/578 (46%), Gaps = 88/578 (15%)
Query: 1 NWNTSSSVCNWTGITCDVRTYRVTALNISGLNLTVTIPSEL------------------- 41
+W+++ + C + G+TC R +VT++++S L V +
Sbjct: 32 DWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHI 89
Query: 42 -GNLS------SLQTLDLSFNWFSGSIPA--SIFNMSSLLSINFINNALFGELPPNFCN- 91
G++S SL +LDLS N SG + S+ + S L +N +N L + P
Sbjct: 90 NGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGG 147
Query: 92 -HLSNLESLFLKSNMFHGK--IPSTLS-SCKRLRETSLSLNDFFWDHTKRNWQQLYLSKN 147
L++LE L L +N G + LS C L+ L +S N
Sbjct: 148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELK-------------------HLAISGN 188
Query: 148 MFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA-GH 206
G++ D++ C L L + NNFS IP + + + L+ LD+ NKL G A
Sbjct: 189 KISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAIST 245
Query: 207 LYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSN 266
+L+ L++S NQ G +P K LQ+L L+ N+ + E+P + L L LS
Sbjct: 246 CTELKLLNISSNQFVGPIPPLPLKS--LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 303
Query: 267 NMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGH 326
N FYG +P +CS L L L NNFSG +P + T+L
Sbjct: 304 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD-------------------TLL---K 341
Query: 327 LLQLQWLDLSDNQLSGSLPSFKFNMPL-LQFLDLSSNRLSVELPTNVFHNLP-FLEELYL 384
+ L+ LDLS N+ SG LP N+ L LDLSSN S + N+ N L+ELYL
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401
Query: 385 SNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA 444
NN F G+IP NCS L L L FN G IP + +L+KL L L N L+G IP
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461
Query: 445 -GHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELY 503
++ L+ L L N L+G +PS L ++ LS+NRL+ E+P + L L L
Sbjct: 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILK 520
Query: 504 LSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIPKEI 541
LSNN F G IP++ +C L L + N F+G IP +
Sbjct: 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Score = 172 bits (437), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 188/579 (32%), Positives = 265/579 (45%), Gaps = 76/579 (13%)
Query: 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFIN---N 79
++A +ISG N+ + S+ L+ L +S N SG + ++S +++ F++ N
Sbjct: 158 LSANSISGANVVGWVLSD--GCGELKHLAISGNKISGDV-----DVSRCVNLEFLDVSSN 210
Query: 80 ALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTK--- 136
+P F S L+ L + N G +S+C L+ ++S N F
Sbjct: 211 NFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPL 268
Query: 137 RNWQQLYLSKNMFYGEIPSDIAN-CSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYN 195
++ Q L L++N F GEIP ++ C L L L N+F GA+P + + LE L L N
Sbjct: 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328
Query: 196 KLQGTIPYAG--HLYQLQWLDLSDNQLSGSLP-SFKFKMPLLQFLDLSSNRLSAELPTNV 252
G +P + L+ LDLS N+ SG LP S L LDLSSN S + N+
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388
Query: 253 FHNLP-FLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLD 311
N L+ELYL NN F G+IP +NCS L L L FN SG IP + +L+KL L
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448
Query: 312 LQYNRLQGTI----LYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVE 367
L N L+G I +YV L+ L L N L+G +PS N L ++ LS+NRL+ E
Sbjct: 449 LWLNMLEGEIPQELMYVK---TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505
Query: 368 LPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEI------ 421
+P + L L L LSNN F G IP++ +C L L L N F G IP +
Sbjct: 506 IPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564
Query: 422 --------------------------SNLTKLEKL-DLQYNRLQGTIP-------YAGHL 447
NL + + + Q NRL P Y GH
Sbjct: 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624
Query: 448 -------FQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLE 500
+ +LD+S N LSG +P MP L L+L N +S +P V +L L
Sbjct: 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV-GDLRGLN 683
Query: 501 ELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIPK 539
L LS+N G IP + L + + NN SG IP+
Sbjct: 684 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 162 bits (410), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 151/447 (33%), Positives = 220/447 (49%), Gaps = 37/447 (8%)
Query: 34 TVTIPSEL-GNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNH 92
T IP L G +L LDLS N F G++P + S L S+ +N GELP +
Sbjct: 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 341
Query: 93 LSNLESLFLKSNMFHGKIPSTLSS-CKRLRETSLSLNDF-------FWDHTKRNWQQLYL 144
+ L+ L L N F G++P +L++ L LS N+F + K Q+LYL
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401
Query: 145 SKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA 204
N F G+IP ++NCS L L L FN SG IP + +L+KL L L N L+G IP
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461
Query: 205 -GHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELY 263
++ L+ L L N L+G +PS L ++ LS+NRL+ E+P + L L L
Sbjct: 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILK 520
Query: 264 LSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIP--------KEISNLTKLEK-LDLQY 314
LSNN F G IP++ +C L L L N F+G IP K +N ++ + ++
Sbjct: 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 580
Query: 315 NRLQGTILYVGHLLQLQWLDLSD-NQLSG--------------SLPSFKFNMPLLQFLDL 359
+ ++ G+LL+ Q + N+LS + P+F N ++ FLD+
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM-FLDM 639
Query: 360 SSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPK 419
S N LS +P + ++P+L L L +N G IP + + L IL L N G IP+
Sbjct: 640 SYNMLSGYIPKEI-GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698
Query: 420 EISNLTKLEKLDLQYNRLQGTIPYAGH 446
+S LT L ++DL N L G IP G
Sbjct: 699 AMSALTMLTEIDLSNNNLSGPIPEMGQ 725
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 116/232 (50%), Gaps = 24/232 (10%)
Query: 5 SSSVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPAS 64
+ + W G R + L +S + + IP+ELG+ SL LDL+ N F+G+IPA+
Sbjct: 503 TGEIPKWIG-----RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557
Query: 65 IFNMSSLLSINFINNALFGELPPNF----CNHLSN-LESLFLKS---NMFHGKIPSTLSS 116
+F S ++ NFI + + + C+ N LE ++S N + P ++S
Sbjct: 558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617
Query: 117 CKRLRETSLSLNDFFWDHTKRNWQQLYL--SKNMFYGEIPSDIANCSYLRILVLQFNNFS 174
TS + ++ N ++L S NM G IP +I + YL IL L N+ S
Sbjct: 618 RVYGGHTSPTFDN--------NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669
Query: 175 GAIPKEISNLTKLEKLDLQYNKLQGTIPYA-GHLYQLQWLDLSDNQLSGSLP 225
G+IP E+ +L L LDL NKL G IP A L L +DLS+N LSG +P
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 187/578 (32%), Positives = 270/578 (46%), Gaps = 88/578 (15%)
Query: 1 NWNTSSSVCNWTGITCDVRTYRVTALNISGLNLTVTIPSEL------------------- 41
+W+++ + C + G+TC R +VT++++S L V +
Sbjct: 29 DWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHI 86
Query: 42 -GNLS------SLQTLDLSFNWFSGSIPA--SIFNMSSLLSINFINNALFGELPPNFCN- 91
G++S SL +LDLS N SG + S+ + S L +N +N L + P
Sbjct: 87 NGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGG 144
Query: 92 -HLSNLESLFLKSNMFHGK--IPSTLS-SCKRLRETSLSLNDFFWDHTKRNWQQLYLSKN 147
L++LE L L +N G + LS C L+ L +S N
Sbjct: 145 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELK-------------------HLAISGN 185
Query: 148 MFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA-GH 206
G++ D++ C L L + NNFS IP + + + L+ LD+ NKL G A
Sbjct: 186 KISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAIST 242
Query: 207 LYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSN 266
+L+ L++S NQ G +P K LQ+L L+ N+ + E+P + L L LS
Sbjct: 243 CTELKLLNISSNQFVGPIPPLPLKS--LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 300
Query: 267 NMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGH 326
N FYG +P +CS L L L NNFSG +P + T+L
Sbjct: 301 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD-------------------TLL---K 338
Query: 327 LLQLQWLDLSDNQLSGSLPSFKFNMPL-LQFLDLSSNRLSVELPTNVFHNLP-FLEELYL 384
+ L+ LDLS N+ SG LP N+ L LDLSSN S + N+ N L+ELYL
Sbjct: 339 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 398
Query: 385 SNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA 444
NN F G+IP NCS L L L FN G IP + +L+KL L L N L+G IP
Sbjct: 399 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 458
Query: 445 -GHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELY 503
++ L+ L L N L+G +PS L ++ LS+NRL+ E+P + L L L
Sbjct: 459 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILK 517
Query: 504 LSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIPKEI 541
LSNN F G IP++ +C L L + N F+G IP +
Sbjct: 518 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Score = 172 bits (436), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 188/579 (32%), Positives = 265/579 (45%), Gaps = 76/579 (13%)
Query: 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFIN---N 79
++A +ISG N+ + S+ L+ L +S N SG + ++S +++ F++ N
Sbjct: 155 LSANSISGANVVGWVLSD--GCGELKHLAISGNKISGDV-----DVSRCVNLEFLDVSSN 207
Query: 80 ALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTK--- 136
+P F S L+ L + N G +S+C L+ ++S N F
Sbjct: 208 NFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPL 265
Query: 137 RNWQQLYLSKNMFYGEIPSDIAN-CSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYN 195
++ Q L L++N F GEIP ++ C L L L N+F GA+P + + LE L L N
Sbjct: 266 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 325
Query: 196 KLQGTIPYAG--HLYQLQWLDLSDNQLSGSLP-SFKFKMPLLQFLDLSSNRLSAELPTNV 252
G +P + L+ LDLS N+ SG LP S L LDLSSN S + N+
Sbjct: 326 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 385
Query: 253 FHNLP-FLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLD 311
N L+ELYL NN F G+IP +NCS L L L FN SG IP + +L+KL L
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 445
Query: 312 LQYNRLQGTI----LYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVE 367
L N L+G I +YV L+ L L N L+G +PS N L ++ LS+NRL+ E
Sbjct: 446 LWLNMLEGEIPQELMYVK---TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 502
Query: 368 LPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEI------ 421
+P + L L L LSNN F G IP++ +C L L L N F G IP +
Sbjct: 503 IPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 561
Query: 422 --------------------------SNLTKLEKL-DLQYNRLQGTIP-------YAGHL 447
NL + + + Q NRL P Y GH
Sbjct: 562 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 621
Query: 448 -------FQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLE 500
+ +LD+S N LSG +P MP L L+L N +S +P V +L L
Sbjct: 622 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV-GDLRGLN 680
Query: 501 ELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIPK 539
L LS+N G IP + L + + NN SG IP+
Sbjct: 681 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 162 bits (410), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 151/447 (33%), Positives = 220/447 (49%), Gaps = 37/447 (8%)
Query: 34 TVTIPSEL-GNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNH 92
T IP L G +L LDLS N F G++P + S L S+ +N GELP +
Sbjct: 279 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 338
Query: 93 LSNLESLFLKSNMFHGKIPSTLSS-CKRLRETSLSLNDF-------FWDHTKRNWQQLYL 144
+ L+ L L N F G++P +L++ L LS N+F + K Q+LYL
Sbjct: 339 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 398
Query: 145 SKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA 204
N F G+IP ++NCS L L L FN SG IP + +L+KL L L N L+G IP
Sbjct: 399 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 458
Query: 205 -GHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELY 263
++ L+ L L N L+G +PS L ++ LS+NRL+ E+P + L L L
Sbjct: 459 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILK 517
Query: 264 LSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIP--------KEISNLTKLEK-LDLQY 314
LSNN F G IP++ +C L L L N F+G IP K +N ++ + ++
Sbjct: 518 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 577
Query: 315 NRLQGTILYVGHLLQLQWLDLSD-NQLSG--------------SLPSFKFNMPLLQFLDL 359
+ ++ G+LL+ Q + N+LS + P+F N ++ FLD+
Sbjct: 578 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM-FLDM 636
Query: 360 SSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPK 419
S N LS +P + ++P+L L L +N G IP + + L IL L N G IP+
Sbjct: 637 SYNMLSGYIPKEI-GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 695
Query: 420 EISNLTKLEKLDLQYNRLQGTIPYAGH 446
+S LT L ++DL N L G IP G
Sbjct: 696 AMSALTMLTEIDLSNNNLSGPIPEMGQ 722
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 116/232 (50%), Gaps = 24/232 (10%)
Query: 5 SSSVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPAS 64
+ + W G R + L +S + + IP+ELG+ SL LDL+ N F+G+IPA+
Sbjct: 500 TGEIPKWIG-----RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 554
Query: 65 IFNMSSLLSINFINNALFGELPPNF----CNHLSN-LESLFLKS---NMFHGKIPSTLSS 116
+F S ++ NFI + + + C+ N LE ++S N + P ++S
Sbjct: 555 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 614
Query: 117 CKRLRETSLSLNDFFWDHTKRNWQQLYL--SKNMFYGEIPSDIANCSYLRILVLQFNNFS 174
TS + ++ N ++L S NM G IP +I + YL IL L N+ S
Sbjct: 615 RVYGGHTSPTFDN--------NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 666
Query: 175 GAIPKEISNLTKLEKLDLQYNKLQGTIPYA-GHLYQLQWLDLSDNQLSGSLP 225
G+IP E+ +L L LDL NKL G IP A L L +DLS+N LSG +P
Sbjct: 667 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 91/306 (29%), Positives = 125/306 (40%), Gaps = 54/306 (17%)
Query: 2 WNTSSSVCN--WTGITCDV--RTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWF 57
W ++ CN W G+ CD +TYRV L++SGLNL P
Sbjct: 27 WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYP------------------- 67
Query: 58 SGSIPASIFNMSSL--LSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLS 115
IP+S+ N+ L L I INN L G +PP L+ L L++ G IP LS
Sbjct: 68 ---IPSSLANLPYLNFLYIGGINN-LVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLS 122
Query: 116 SCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSG 175
K L L S N G +P I++ L + N SG
Sbjct: 123 QIKTLVT-------------------LDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163
Query: 176 AIPKEISNLTKL-EKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLL 234
AIP + +KL + + N+L G IP L ++DLS N L G
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223
Query: 235 QFLDLSSNRLSAEL-PTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNF 293
Q + L+ N L+ +L + NL L+ L NN YG +P +L L + FNN
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLD---LRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Query: 294 SGAIPK 299
G IP+
Sbjct: 281 CGEIPQ 286
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 100/219 (45%), Gaps = 3/219 (1%)
Query: 273 IPSDTANCSYLRILVLR-FNNFSGAIPKEISNLTKLEKLDLQYNRLQGTIL-YVGHLLQL 330
IPS AN YL L + NN G IP I+ LT+L L + + + G I ++ + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 331 QWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFY 390
LD S N LSG+LP ++P L + NR+S +P + + +S N
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 391 GEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQL 450
G+IP N + L + L N G + +K+ L N L + G L
Sbjct: 188 GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL 246
Query: 451 QWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELP 489
LDL +N++ G+LP ++ L L++S N L E+P
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 101/226 (44%), Gaps = 30/226 (13%)
Query: 147 NMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA-G 205
N G IP IA + L L + N SGAIP +S + L LD YN L GT+P +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 206 HLYQLQWLDLSDNQLSGSLP-SFKFKMPLLQFLDLSSNRLSAELPTNVFH-NLPFLEELY 263
L L + N++SG++P S+ L + +S NRL+ ++P + NL F++
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVD--- 203
Query: 264 LSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILY 323
LS NM G+ +L N +K+ L N L +
Sbjct: 204 LSRNMLEGDA----------SVLFGSDKN--------------TQKIHLAKNSLAFDLGK 239
Query: 324 VGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELP 369
VG L LDL +N++ G+LP + L L++S N L E+P
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 91/232 (39%), Gaps = 49/232 (21%)
Query: 357 LDLSSNRLSVELPT-NVFHNLPFLEELYLSN-NMFYGEIPSDTQNCSYLRILVLKFNNFP 414
LDLS L P + NLP+L LY+ N G IP + L L + N
Sbjct: 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 415 GAIPKEISNLTKLEKLDLQYNRLQGTIPYA-GHLFQLQWLDLSDNQLSGSLP-SFKFKMP 472
GAIP +S + L LD YN L GT+P + L L + N++SG++P S+
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174
Query: 473 LLQFLDLSSNRLSTELPTNVFH-NLPFLE------------------------------- 500
L + +S NRL+ ++P + NL F++
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234
Query: 501 -------------ELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIPK 539
L L NN YG +P +L L V FNN G IP+
Sbjct: 235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 106/371 (28%), Positives = 162/371 (43%), Gaps = 27/371 (7%)
Query: 96 LESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPS 155
++++ K+N+ + L L+ L + N Q+ S N P
Sbjct: 22 MKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP- 80
Query: 156 DIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDL 215
+ N + L +++ N + P ++NLT L L L N++ P +L L L+L
Sbjct: 81 -LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLK-NLTNLNRLEL 136
Query: 216 SDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPS 275
S N +S S + LQ L+ SSN+++ P NL LE L +S+N +I S
Sbjct: 137 SSNTISD--ISALSGLTSLQQLNFSSNQVTDLKP---LANLTTLERLDISSNKV-SDI-S 189
Query: 276 DTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDL 335
A + L L+ N S P I LT L++L L N+L+ I + L L LDL
Sbjct: 190 VLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD-IGTLASLTNLTDLDL 246
Query: 336 SDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIP- 394
++NQ+S P L L L +N++S P L L L L+ N P
Sbjct: 247 ANNQISNLAPLSGLTK--LTELKLGANQISNISP---LAGLTALTNLELNENQLEDISPI 301
Query: 395 SDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLD 454
S+ +N +YL L FNN P +S+LTKL++L YN + +L + WL
Sbjct: 302 SNLKNLTYL---TLYFNNISDISP--VSSLTKLQRL-FFYNNKVSDVSSLANLTNINWLS 355
Query: 455 LSDNQLSGSLP 465
NQ+S P
Sbjct: 356 AGHNQISDLTP 366
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 98/361 (27%), Positives = 143/361 (39%), Gaps = 71/361 (19%)
Query: 32 NLTVTIP-SELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFC 90
N+T T+ ++L +++LQ L G + +++L INF NN L P
Sbjct: 30 NVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP---L 81
Query: 91 NHLSNLESLFLKSNMFHGKIP-STLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMF 149
+L+ L + + +N P + L++ L + + D N +L LS N
Sbjct: 82 KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI 141
Query: 150 YGEIPSDIANCSYLRILVLQFNNFSGAIP--KEISNLTKLEKLDLQYNKLQGTIPYA--- 204
SDI+ S L L Q N S + K ++NLT LE+LD+ NK+ A
Sbjct: 142 -----SDISALSGLTSLQ-QLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 195
Query: 205 ------------------GHLYQLQWLDLSDNQLS--GSLPSFKFKMPLLQFLDLSSNRL 244
G L L L L+ NQL G+L S L LDL++N++
Sbjct: 196 NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTN----LTDLDLANNQI 251
Query: 245 SAELPTNVFHNLPFLEELYLSNNMFYGEIP--------------------SDTANCSYLR 284
S P L L EL L N P S +N L
Sbjct: 252 SNLAP---LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLT 308
Query: 285 ILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSL 344
L L FNN S P +S+LTKL++L YN + + +L + WL NQ+S
Sbjct: 309 YLTLYFNNISDISP--VSSLTKLQRL-FFYNNKVSDVSSLANLTNINWLSAGHNQISDLT 365
Query: 345 P 345
P
Sbjct: 366 P 366
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 124/285 (43%), Gaps = 40/285 (14%)
Query: 272 EIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQ 331
+I +DTA ++ ++ + N ++ +T L+ L + G + Y+ +L Q+
Sbjct: 11 QIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQIN 69
Query: 332 WLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYG 391
+ S+NQL+ P K L+ L +++N+++ P NL L L L NN
Sbjct: 70 F---SNNQLTDITP-LKNLTKLVDIL-MNNNQIADITP---LANLTNLTGLTLFNNQITD 121
Query: 392 -------------EIPSDT-QNCSYLRILV----LKFNNFPGAIPKEISNLTKLEKLDLQ 433
E+ S+T + S L L L F++ K ++NLT LE+LD+
Sbjct: 122 IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDIS 181
Query: 434 YNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLD---LSSNRLSTELPT 490
N++ I L L+ L ++NQ+S P + +L LD L+ N+L
Sbjct: 182 SNKVSD-ISVLAKLTNLESLIATNNQISDITP-----LGILTNLDELSLNGNQLK---DI 232
Query: 491 NVFHNLPFLEELYLSNNMFYGEIP-SDTPNCSYLRILVVQFNNFS 534
+L L +L L+NN P S + L++ Q +N S
Sbjct: 233 GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS 277
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 106/371 (28%), Positives = 161/371 (43%), Gaps = 27/371 (7%)
Query: 96 LESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPS 155
++++ K+N+ + L L+ L + N Q+ S N P
Sbjct: 22 MKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP- 80
Query: 156 DIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDL 215
+ N + L +++ N + P ++NLT L L L N++ P +L L L+L
Sbjct: 81 -LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLK-NLTNLNRLEL 136
Query: 216 SDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPS 275
S N +S S + LQ L SSN+++ P NL LE L +S+N +I S
Sbjct: 137 SSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP---LANLTTLERLDISSNKV-SDI-S 189
Query: 276 DTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDL 335
A + L L+ N S P I LT L++L L N+L+ I + L L LDL
Sbjct: 190 VLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD-IGTLASLTNLTDLDL 246
Query: 336 SDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIP- 394
++NQ+S P L L L +N++S P L L L L+ N P
Sbjct: 247 ANNQISNLAPLSGLTK--LTELKLGANQISNISP---LAGLTALTNLELNENQLEDISPI 301
Query: 395 SDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLD 454
S+ +N +YL L FNN P +S+LTKL++L YN + +L + WL
Sbjct: 302 SNLKNLTYL---TLYFNNISDISP--VSSLTKLQRL-FFYNNKVSDVSSLANLTNINWLS 355
Query: 455 LSDNQLSGSLP 465
NQ+S P
Sbjct: 356 AGHNQISDLTP 366
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/360 (26%), Positives = 143/360 (39%), Gaps = 69/360 (19%)
Query: 32 NLTVTIP-SELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFC 90
N+T T+ ++L +++LQ L G + +++L INF NN L P
Sbjct: 30 NVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP---L 81
Query: 91 NHLSNLESLFLKSNMFHGKIP-STLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMF 149
+L+ L + + +N P + L++ L + + D N +L LS N
Sbjct: 82 KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI 141
Query: 150 YGEIPSDIANCSYLRILV-LQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA---- 204
SDI+ S L L L F++ K ++NLT LE+LD+ NK+ A
Sbjct: 142 -----SDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTN 196
Query: 205 -----------------GHLYQLQWLDLSDNQLS--GSLPSFKFKMPLLQFLDLSSNRLS 245
G L L L L+ NQL G+L S L LDL++N++S
Sbjct: 197 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTN----LTDLDLANNQIS 252
Query: 246 AELPTNVFHNLPFLEELYLSNNMFYGEIP--------------------SDTANCSYLRI 285
P L L EL L N P S +N L
Sbjct: 253 NLAP---LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY 309
Query: 286 LVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLP 345
L L FNN S P +S+LTKL++L YN + + +L + WL NQ+S P
Sbjct: 310 LTLYFNNISDISP--VSSLTKLQRL-FFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP 366
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 124/285 (43%), Gaps = 40/285 (14%)
Query: 272 EIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQ 331
+I +DTA ++ ++ + N ++ +T L+ L + G + Y+ +L Q+
Sbjct: 11 QIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQIN 69
Query: 332 WLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYG 391
+ S+NQL+ P K L+ L +++N+++ P NL L L L NN
Sbjct: 70 F---SNNQLTDITP-LKNLTKLVDIL-MNNNQIADITP---LANLTNLTGLTLFNNQITD 121
Query: 392 -------------EIPSDT-QNCSYLRILV----LKFNNFPGAIPKEISNLTKLEKLDLQ 433
E+ S+T + S L L L F++ K ++NLT LE+LD+
Sbjct: 122 IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDIS 181
Query: 434 YNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLD---LSSNRLSTELPT 490
N++ I L L+ L ++NQ+S P + +L LD L+ N+L
Sbjct: 182 SNKVSD-ISVLAKLTNLESLIATNNQISDITP-----LGILTNLDELSLNGNQLK---DI 232
Query: 491 NVFHNLPFLEELYLSNNMFYGEIP-SDTPNCSYLRILVVQFNNFS 534
+L L +L L+NN P S + L++ Q +N S
Sbjct: 233 GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS 277
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 85/274 (31%), Positives = 124/274 (45%), Gaps = 16/274 (5%)
Query: 210 LQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMF 269
LQ LDL+ LS LPS + L+ L LS+N+ L N P L L + N
Sbjct: 280 LQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFE-NLCQISASNFPSLTHLSIKGNTK 337
Query: 270 YGEIPSDT-ANCSYLRILVLRFNNF--SGAIPKEISNLTKLEKLDLQYNR-LQGTILYVG 325
E+ + N LR L L ++ S ++ NL+ L+ L+L YN L
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397
Query: 326 HLLQLQWLDLSDNQLSGSLPSFKF-NMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYL 384
QL+ LDL+ +L F N+ LL+ L+LS + L + +F LP L+ L L
Sbjct: 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS-SEQLFDGLPALQHLNL 456
Query: 385 SNNMF-YGEIPSDT--QNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRL-QGT 440
N F G I Q L ILVL F + ++L + +DL +NRL +
Sbjct: 457 QGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSS 516
Query: 441 IPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLL 474
I HL + +L+L+ N +S LPS +P+L
Sbjct: 517 IEALSHLKGI-YLNLASNHISIILPSL---LPIL 546
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 123/466 (26%), Positives = 193/466 (41%), Gaps = 78/466 (16%)
Query: 96 LESLFLKSNMFHGKIPSTLSSCKRLR-----ETSLSLNDFFWDHTKRNWQQLYLSKNMFY 150
L++L L +N + LS K L+ +T +S DF H ++ + LYL N
Sbjct: 83 LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS 142
Query: 151 G-EIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLE--KLDLQYNKLQGTIPYAGHL 207
++P L++L Q N +++S+L + L+L N + G P A
Sbjct: 143 SIKLPKGFPT-EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS 201
Query: 208 YQLQWLDLSDNQ-----LSGSLPSFKFKMPLLQFLDLSSNRLSAE--------------- 247
Q L+ Q G S + L F D+ +S
Sbjct: 202 AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL 261
Query: 248 -------LPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKE 300
+ +N FH L+EL L+ E+PS S L+ LVL N F
Sbjct: 262 QKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQIS 320
Query: 301 IS-------------------------NLTKLEKLDLQYNRLQGTI---LYVGHLLQLQW 332
S NL L +LDL ++ ++ + L + +L LQ
Sbjct: 321 ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQS 380
Query: 333 LDLSDNQ-LSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYG 391
L+LS N+ LS +FK P L+ LDL+ RL V+ + F NL L+ L LS+++
Sbjct: 381 LNLSYNEPLSLKTEAFK-ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL-- 437
Query: 392 EIPSDT--QNCSYLRILVLKFNNFP-GAIPK--EISNLTKLEKLDLQYNRLQGTIPYA-G 445
+I S+ L+ L L+ N+FP G I K + L +LE L L + L +A
Sbjct: 438 DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT 497
Query: 446 HLFQLQWLDLSDNQL-SGSLPSFKFKMPLLQFLDLSSNRLSTELPT 490
L + +DLS N+L S S+ + + +L+L+SN +S LP+
Sbjct: 498 SLKMMNHVDLSHNRLTSSSIEALSHLKGI--YLNLASNHISIILPS 541
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 88/327 (26%), Positives = 140/327 (42%), Gaps = 25/327 (7%)
Query: 41 LGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLF 100
LG + D+S F G S+ SIN + F + N + S L+ L
Sbjct: 232 LGTFEDMDDEDISPAVFEGLCEMSVE------SINLQKHYFFN-ISSNTFHCFSGLQELD 284
Query: 101 LKSNMFHGKIPSTLSSCKRLRETSLSLNDF--FWDHTKRNW---QQLYLSKNMFYGEIPS 155
L + ++PS L L++ LS N F + N+ L + N E+ +
Sbjct: 285 LTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343
Query: 156 D-IANCSYLRILVLQFNNF--SGAIPKEISNLTKLEKLDLQYNK-LQGTIPYAGHLYQLQ 211
+ N LR L L ++ S ++ NL+ L+ L+L YN+ L QL+
Sbjct: 344 GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE 403
Query: 212 WLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMF- 269
LDL+ +L F+ + LL+ L+LS + L +F LP L+ L L N F
Sbjct: 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS-SEQLFDGLPALQHLNLQGNHFP 462
Query: 270 YGEIPSDTA--NCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHL 327
G I + L ILVL F + S ++L + +DL +NRL + +
Sbjct: 463 KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522
Query: 328 LQLQWLDLSDNQLSGSLPSFKFNMPLL 354
L+ +L+L+ N +S LPS +P+L
Sbjct: 523 LKGIYLNLASNHISIILPSL---LPIL 546
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 104/371 (28%), Positives = 160/371 (43%), Gaps = 28/371 (7%)
Query: 96 LESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPS 155
++++ K+N+ + L L+ L + N Q+ S N P
Sbjct: 22 MKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP- 80
Query: 156 DIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDL 215
+ N + L +++ N + P ++NLT L L L N++ P +L L L+L
Sbjct: 81 -LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLK-NLTNLNRLEL 136
Query: 216 SDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPS 275
S N +S S + LQ L+ N+++ P NL LE L +S+N +I S
Sbjct: 137 SSNTISD--ISALSGLTSLQQLNFG-NQVTDLKP---LANLTTLERLDISSNKV-SDI-S 188
Query: 276 DTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDL 335
A + L L+ N S P I LT L++L L N+L+ I + L L LDL
Sbjct: 189 VLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD-IGTLASLTNLTDLDL 245
Query: 336 SDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIP- 394
++NQ+S P L L L +N++S P L L L L+ N P
Sbjct: 246 ANNQISNLAPLSGLTK--LTELKLGANQISNISP---LAGLTALTNLELNENQLEDISPI 300
Query: 395 SDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLD 454
S+ +N +YL L FNN P +S+LTKL++L YN + +L + WL
Sbjct: 301 SNLKNLTYL---TLYFNNISDISP--VSSLTKLQRL-FFYNNKVSDVSSLANLTNINWLS 354
Query: 455 LSDNQLSGSLP 465
NQ+S P
Sbjct: 355 AGHNQISDLTP 365
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 98/361 (27%), Positives = 143/361 (39%), Gaps = 72/361 (19%)
Query: 32 NLTVTIP-SELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFC 90
N+T T+ ++L +++LQ L G + +++L INF NN L P
Sbjct: 30 NVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP---L 81
Query: 91 NHLSNLESLFLKSNMFHGKIP-STLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMF 149
+L+ L + + +N P + L++ L + + D N +L LS N
Sbjct: 82 KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI 141
Query: 150 YGEIPSDIANCSYLRILVLQFNNFSGAIP--KEISNLTKLEKLDLQYNKLQGTIPYA--- 204
SDI+ S L LQ NF + K ++NLT LE+LD+ NK+ A
Sbjct: 142 -----SDISALSGLT--SLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 194
Query: 205 ------------------GHLYQLQWLDLSDNQLS--GSLPSFKFKMPLLQFLDLSSNRL 244
G L L L L+ NQL G+L S L LDL++N++
Sbjct: 195 NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTN----LTDLDLANNQI 250
Query: 245 SAELPTNVFHNLPFLEELYLSNNMFYGEIP--------------------SDTANCSYLR 284
S P L L EL L N P S +N L
Sbjct: 251 SNLAP---LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLT 307
Query: 285 ILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSL 344
L L FNN S P +S+LTKL++L YN + + +L + WL NQ+S
Sbjct: 308 YLTLYFNNISDISP--VSSLTKLQRL-FFYNNKVSDVSSLANLTNINWLSAGHNQISDLT 364
Query: 345 P 345
P
Sbjct: 365 P 365
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 125/284 (44%), Gaps = 39/284 (13%)
Query: 272 EIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQ 331
+I +DTA ++ ++ + N ++ +T L+ L + G + Y+ +L Q+
Sbjct: 11 QIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQIN 69
Query: 332 WLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYG 391
+ S+NQL+ P K L+ L +++N+++ P NL L L L NN
Sbjct: 70 F---SNNQLTDITP-LKNLTKLVDIL-MNNNQIADITP---LANLTNLTGLTLFNNQITD 121
Query: 392 -------------EIPSDT-QNCSYLRILV-LKFNNFPGAIP--KEISNLTKLEKLDLQY 434
E+ S+T + S L L L+ NF + K ++NLT LE+LD+
Sbjct: 122 IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISS 181
Query: 435 NRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLD---LSSNRLSTELPTN 491
N++ I L L+ L ++NQ+S P + +L LD L+ N+L
Sbjct: 182 NKVSD-ISVLAKLTNLESLIATNNQISDITP-----LGILTNLDELSLNGNQLK---DIG 232
Query: 492 VFHNLPFLEELYLSNNMFYGEIP-SDTPNCSYLRILVVQFNNFS 534
+L L +L L+NN P S + L++ Q +N S
Sbjct: 233 TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS 276
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 104/372 (27%), Positives = 159/372 (42%), Gaps = 30/372 (8%)
Query: 96 LESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPS 155
++++ K+N+ + L L+ L + N Q+ S N P
Sbjct: 27 MKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP- 85
Query: 156 DIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDL 215
+ N + L +++ N + P ++NLT L L L N++ P +L L L+L
Sbjct: 86 -LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLK-NLTNLNRLEL 141
Query: 216 SDNQLSG-SLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIP 274
S N +S S S + L F N+++ P NL LE L +S+N +I
Sbjct: 142 SSNTISDISALSGLTSLQQLSF----GNQVTDLKP---LANLTTLERLDISSNKV-SDI- 192
Query: 275 SDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLD 334
S A + L L+ N S P I LT L++L L N+L+ I + L L LD
Sbjct: 193 SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD-IGTLASLTNLTDLD 249
Query: 335 LSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIP 394
L++NQ+S P L L L +N++S P L L L L+ N P
Sbjct: 250 LANNQISNLAPLSGLTK--LTELKLGANQISNISP---LAGLTALTNLELNENQLEDISP 304
Query: 395 -SDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWL 453
S+ +N +YL L FNN P +S+LTKL++L YN + +L + WL
Sbjct: 305 ISNLKNLTYL---TLYFNNISDISP--VSSLTKLQRL-FFYNNKVSDVSSLANLTNINWL 358
Query: 454 DLSDNQLSGSLP 465
NQ+S P
Sbjct: 359 SAGHNQISDLTP 370
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 98/360 (27%), Positives = 143/360 (39%), Gaps = 70/360 (19%)
Query: 32 NLTVTIP-SELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFC 90
N+T T+ ++L +++LQ L G + +++L INF NN L P
Sbjct: 35 NVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP---L 86
Query: 91 NHLSNLESLFLKSNMFHGKIP-STLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMF 149
+L+ L + + +N P + L++ L + + D N +L LS N
Sbjct: 87 KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI 146
Query: 150 YGEIPSDIANCSYLRILV-LQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA---- 204
SDI+ S L L L F N + K ++NLT LE+LD+ NK+ A
Sbjct: 147 -----SDISALSGLTSLQQLSFGNQVTDL-KPLANLTTLERLDISSNKVSDISVLAKLTN 200
Query: 205 -----------------GHLYQLQWLDLSDNQLS--GSLPSFKFKMPLLQFLDLSSNRLS 245
G L L L L+ NQL G+L S L LDL++N++S
Sbjct: 201 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTN----LTDLDLANNQIS 256
Query: 246 AELPTNVFHNLPFLEELYLSNNMFYGEIP--------------------SDTANCSYLRI 285
P L L EL L N P S +N L
Sbjct: 257 NLAP---LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY 313
Query: 286 LVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLP 345
L L FNN S P +S+LTKL++L YN + + +L + WL NQ+S P
Sbjct: 314 LTLYFNNISDISP--VSSLTKLQRL-FFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP 370
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 124/285 (43%), Gaps = 41/285 (14%)
Query: 272 EIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQ 331
+I +DTA ++ ++ + N ++ +T L+ L + G + Y+ +L Q+
Sbjct: 16 QIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQIN 74
Query: 332 WLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYG 391
+ S+NQL+ P K L+ L +++N+++ P NL L L L NN
Sbjct: 75 F---SNNQLTDITP-LKNLTKLVDIL-MNNNQIADITP---LANLTNLTGLTLFNNQITD 126
Query: 392 -------------EIPSDT-QNCSYLRILV----LKFNNFPGAIPKEISNLTKLEKLDLQ 433
E+ S+T + S L L L F N + K ++NLT LE+LD+
Sbjct: 127 IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDL-KPLANLTTLERLDIS 185
Query: 434 YNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLD---LSSNRLSTELPT 490
N++ I L L+ L ++NQ+S P + +L LD L+ N+L
Sbjct: 186 SNKVSD-ISVLAKLTNLESLIATNNQISDITP-----LGILTNLDELSLNGNQLK---DI 236
Query: 491 NVFHNLPFLEELYLSNNMFYGEIP-SDTPNCSYLRILVVQFNNFS 534
+L L +L L+NN P S + L++ Q +N S
Sbjct: 237 GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS 281
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 93/306 (30%), Positives = 133/306 (43%), Gaps = 50/306 (16%)
Query: 172 NFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLY-QLQWLDLSDNQLSGSLPSFKFK 230
+ S A+ K + ++ +E L+LQ ++ + QLQ LDL+ L G LPS
Sbjct: 239 DISSAMLKGLCEMS-VESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKG 296
Query: 231 MPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRF 290
+ LL+ L LS N +L N P L LY+ N V +
Sbjct: 297 LNLLKKLVLSVNHFD-QLCQISAANFPSLTHLYIRGN-------------------VKKL 336
Query: 291 NNFSGAIPKEISNLTKLEKLDLQYNRLQGT---ILYVGHLLQLQWLDLSDNQLSGSLPSF 347
+ G + K L L+ LDL +N ++ + L + +L LQ L+LS N+ G L S
Sbjct: 337 HLGVGCLEK----LGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLG-LQSQ 391
Query: 348 KFN-MPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYL-------SNNMFYGEIPSDTQN 399
F P L+ LDL+ RL + P + F NL FL+ L L SN +P
Sbjct: 392 AFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLP----- 446
Query: 400 CSYLRILVLKFNNF-PGAIPKE--ISNLTKLEKLDLQYNRLQGTIPYAGH-LFQLQWLDL 455
LR L LK N+F G I K + + LE L L L A H L ++ +DL
Sbjct: 447 --VLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDL 504
Query: 456 SDNQLS 461
S N L+
Sbjct: 505 SHNSLT 510
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 114/263 (43%), Gaps = 51/263 (19%)
Query: 292 NFSGAIPKEISNLTKLEKLDLQYNR---LQGTILYVGHLLQLQWLDLSDNQLSGSLPSFK 348
+ S A+ K + ++ +E L+LQ +R + T QLQ LDL+ L G LPS
Sbjct: 239 DISSAMLKGLCEMS-VESLNLQEHRFSDISSTTFQC--FTQLQELDLTATHLKG-LPSGM 294
Query: 349 FNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVL 408
+ LL+ L LS N +L N P L LY+ N V
Sbjct: 295 KGLNLLKKLVLSVNHFD-QLCQISAANFPSLTHLYIRGN-------------------VK 334
Query: 409 KFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA---GHLFQLQWLDLSDNQLSGSLP 465
K + G + K L L+ LDL +N ++ + + +L LQ L+LS N+ G L
Sbjct: 335 KLHLGVGCLEK----LGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLG-LQ 389
Query: 466 SFKFK-MPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYL-------SNNMFYGEIPSDT 517
S FK P L+ LDL+ RL P + F NL FL+ L L SN +P
Sbjct: 390 SQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLP--- 446
Query: 518 PNCSYLRILVVQFNNF-SGAIPK 539
LR L ++ N+F G I K
Sbjct: 447 ----VLRHLNLKGNHFQDGTITK 465
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 101/216 (46%), Gaps = 34/216 (15%)
Query: 176 AIPKEISNLTKLEKLDLQYNKLQGTIPYAGH-LYQLQWLDLSDNQLSGSLPSFKFK-MPL 233
AIP I TK KLDLQ NKL A H L +L+ L L+DN+L +LP+ FK +
Sbjct: 30 AIPSNIPADTK--KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKN 86
Query: 234 LQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNF 293
L+ L ++ N+L A LP VF L L EL L N +P
Sbjct: 87 LETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKS-LP------------------- 125
Query: 294 SGAIPKEISNLTKLEKLDLQYNRLQGTILYV-GHLLQLQWLDLSDNQLSGSLPSFKFN-M 351
P+ +LTKL L L YN LQ V L L+ L L +NQL +P F+ +
Sbjct: 126 ----PRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKL 180
Query: 352 PLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNN 387
L+ L L +N+L +P F +L L+ L L N
Sbjct: 181 TELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 92/182 (50%), Gaps = 15/182 (8%)
Query: 333 LDLSDNQLSGSLPSFKFN-MPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYG 391
LDL N+LS SLPS F+ + L+ L L+ N+L LP +F L LE L++++N
Sbjct: 42 LDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQA 99
Query: 392 ---EIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA--GH 446
+ N + LR+ + + P P+ +LTKL L L YN LQ ++P
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLP---PRVFDSLTKLTYLSLGYNELQ-SLPKGVFDK 155
Query: 447 LFQLQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLS 505
L L+ L L +NQL +P F K+ L+ L L +N+L +P F +L L+ L L
Sbjct: 156 LTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQ 213
Query: 506 NN 507
N
Sbjct: 214 EN 215
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 107/265 (40%), Gaps = 54/265 (20%)
Query: 6 SSVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASI 65
++C G C + +++ S LT IPS + + + LDL N S S+P+
Sbjct: 2 EALCKKDGGVCSCNNNK-NSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLS-SLPSKA 56
Query: 66 FNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSL 125
F+ + L + ++N+ LP L NLE+L++ N +L
Sbjct: 57 FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ----------------AL 100
Query: 126 SLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLT 185
+ F + N + LR L N P+ +LT
Sbjct: 101 PIGVF------------------------DQLVNLAELR---LDRNQLKSLPPRVFDSLT 133
Query: 186 KLEKLDLQYNKLQGTIPYA--GHLYQLQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSN 242
KL L L YN+LQ ++P L L+ L L +NQL +P F K+ L+ L L +N
Sbjct: 134 KLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNN 191
Query: 243 RLSAELPTNVFHNLPFLEELYLSNN 267
+L +P F +L L+ L L N
Sbjct: 192 QLK-RVPEGAFDSLEKLKMLQLQEN 215
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 102/383 (26%), Positives = 159/383 (41%), Gaps = 45/383 (11%)
Query: 96 LESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPS 155
++++ K+N+ + L L+ L + N Q+ S N P
Sbjct: 22 MKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP- 80
Query: 156 DIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDL 215
+ N + L +++ N + P ++NLT L L L N++ P +L L L+L
Sbjct: 81 -LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLK-NLTNLNRLEL 136
Query: 216 SDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPS 275
S N +S S + LQ L SSN+++ P NL LE L +S+N +I S
Sbjct: 137 SSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP---LANLTTLERLDISSNKV-SDI-S 189
Query: 276 DTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDL 335
A + L L+ N S P I LT L++L L N+L+ I + L L LDL
Sbjct: 190 VLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD-IGTLASLTNLTDLDL 246
Query: 336 SDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIP- 394
++NQ+S P L L L +N++S P L L L L+ N P
Sbjct: 247 ANNQISNLAPLSGLTK--LTELKLGANQISNISP---LAGLTALTNLELNENQLEDISPI 301
Query: 395 SDTQNCSYLRILVLKFNNFPGAIP--------------------KEISNLTKLEKLDLQY 434
S+ +N +YL L FNN P ++NLT + L +
Sbjct: 302 SNLKNLTYL---TLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGH 358
Query: 435 NRLQGTIPYAGHLFQLQWLDLSD 457
N++ P A +L ++ L L+D
Sbjct: 359 NQISDLTPLA-NLTRITQLGLND 380
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 96/360 (26%), Positives = 144/360 (40%), Gaps = 69/360 (19%)
Query: 32 NLTVTIP-SELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFC 90
N+T T+ ++L +++LQ L G + +++L INF NN L P
Sbjct: 30 NVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP---L 81
Query: 91 NHLSNLESLFLKSNMFHGKIP-STLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMF 149
+L+ L + + +N P + L++ L + + D N +L LS N
Sbjct: 82 KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI 141
Query: 150 YGEIPSDIANCSYLRILV-LQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA---- 204
SDI+ S L L L F++ K ++NLT LE+LD+ NK+ A
Sbjct: 142 -----SDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTN 196
Query: 205 -----------------GHLYQLQWLDLSDNQLS--GSLPSFKFKMPLLQFLDLSSNRLS 245
G L L L L+ NQL G+L S L LDL++N++S
Sbjct: 197 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTN----LTDLDLANNQIS 252
Query: 246 AELPTNVFHNLPFLEELYLSNNMFYGEIP--------------------SDTANCSYLRI 285
P L L EL L N P S +N L
Sbjct: 253 NLAP---LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY 309
Query: 286 LVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLP 345
L L FNN S P +S+LTKL++L N++ + + +L + WL NQ+S P
Sbjct: 310 LTLYFNNISDISP--VSSLTKLQRLFFSNNKVSD-VSSLANLTNINWLSAGHNQISDLTP 366
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 124/285 (43%), Gaps = 40/285 (14%)
Query: 272 EIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQ 331
+I +DTA ++ ++ + N ++ +T L+ L + G + Y+ +L Q+
Sbjct: 11 QIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQIN 69
Query: 332 WLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYG 391
+ S+NQL+ P K L+ L +++N+++ P NL L L L NN
Sbjct: 70 F---SNNQLTDITP-LKNLTKLVDIL-MNNNQIADITP---LANLTNLTGLTLFNNQITD 121
Query: 392 -------------EIPSDT-QNCSYLRILV----LKFNNFPGAIPKEISNLTKLEKLDLQ 433
E+ S+T + S L L L F++ K ++NLT LE+LD+
Sbjct: 122 IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDIS 181
Query: 434 YNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLD---LSSNRLSTELPT 490
N++ I L L+ L ++NQ+S P + +L LD L+ N+L
Sbjct: 182 SNKVSD-ISVLAKLTNLESLIATNNQISDITP-----LGILTNLDELSLNGNQLK---DI 232
Query: 491 NVFHNLPFLEELYLSNNMFYGEIP-SDTPNCSYLRILVVQFNNFS 534
+L L +L L+NN P S + L++ Q +N S
Sbjct: 233 GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS 277
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 97/361 (26%), Positives = 144/361 (39%), Gaps = 72/361 (19%)
Query: 32 NLTVTIP-SELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFC 90
N+T T+ ++L +++LQ L G + +++L INF NN L P
Sbjct: 30 NVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP---L 81
Query: 91 NHLSNLESLFLKSNMFHGKIP-STLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMF 149
+L+ L + + +N P + L++ L + + D N +L LS N
Sbjct: 82 KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI 141
Query: 150 YGEIPSDIANCSYLRILVLQFNNFSGAIP--KEISNLTKLEKLDLQYNKLQGTIPYA--- 204
SDI+ S L LQ NF + K ++NLT LE+LD+ NK+ A
Sbjct: 142 -----SDISALSGLT--SLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 194
Query: 205 ------------------GHLYQLQWLDLSDNQLS--GSLPSFKFKMPLLQFLDLSSNRL 244
G L L L L+ NQL G+L S L LDL++N++
Sbjct: 195 NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTN----LTDLDLANNQI 250
Query: 245 SAELPTNVFHNLPFLEELYLSNNMFYGEIP--------------------SDTANCSYLR 284
S P L L EL L N P S +N L
Sbjct: 251 SNLAP---LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLT 307
Query: 285 ILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSL 344
L L FNN S P +S+LTKL++L N++ + + +L + WL NQ+S
Sbjct: 308 YLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSD-VSSLANLTNINWLSAGHNQISDLT 364
Query: 345 P 345
P
Sbjct: 365 P 365
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 84/305 (27%), Positives = 136/305 (44%), Gaps = 32/305 (10%)
Query: 157 IANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLS 216
+AN + L L L N + P + NLT L +L+L N + +G L LQ L+
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSG-LTSLQQLNFG 159
Query: 217 DNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSD 276
NQ++ P L+ LD+SSN++S +V L LE L +NN P
Sbjct: 160 -NQVTDLKPLANLTT--LERLDISSNKVS---DISVLAKLTNLESLIATNNQISDITP-- 211
Query: 277 TANCSYLRILV-LRFNNFSGAIPKEI---SNLTKLEKLDLQYNRLQGTILYVGHLLQLQW 332
L IL L + +G K+I ++LT L LDL N++ + + L +L
Sbjct: 212 ------LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN-LAPLSGLTKLTE 264
Query: 333 LDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGE 392
L L NQ+S P + L L+L+ N+L P + NL +L +++
Sbjct: 265 LKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLT-------LYFNN 315
Query: 393 IPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQW 452
I + S ++ L F+N + ++NLT + L +N++ P A +L ++
Sbjct: 316 ISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISDLTPLA-NLTRITQ 374
Query: 453 LDLSD 457
L L+D
Sbjct: 375 LGLND 379
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 125/284 (44%), Gaps = 39/284 (13%)
Query: 272 EIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQ 331
+I +DTA ++ ++ + N ++ +T L+ L + G + Y+ +L Q+
Sbjct: 11 QIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQIN 69
Query: 332 WLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYG 391
+ S+NQL+ P K L+ L +++N+++ P NL L L L NN
Sbjct: 70 F---SNNQLTDITP-LKNLTKLVDIL-MNNNQIADITP---LANLTNLTGLTLFNNQITD 121
Query: 392 -------------EIPSDT-QNCSYLRILV-LKFNNFPGAIP--KEISNLTKLEKLDLQY 434
E+ S+T + S L L L+ NF + K ++NLT LE+LD+
Sbjct: 122 IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISS 181
Query: 435 NRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLD---LSSNRLSTELPTN 491
N++ I L L+ L ++NQ+S P + +L LD L+ N+L
Sbjct: 182 NKVSD-ISVLAKLTNLESLIATNNQISDITP-----LGILTNLDELSLNGNQLK---DIG 232
Query: 492 VFHNLPFLEELYLSNNMFYGEIP-SDTPNCSYLRILVVQFNNFS 534
+L L +L L+NN P S + L++ Q +N S
Sbjct: 233 TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS 276
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 85/306 (27%), Positives = 134/306 (43%), Gaps = 39/306 (12%)
Query: 209 QLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNM 268
++Q LDL+ L+G LPS M L+ L L++N N + P L +LY+ NM
Sbjct: 278 RVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQINAA-SFPSLRDLYIKGNM 335
Query: 269 FYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTI---LYVG 325
++ + + + L L+KLDL ++ ++ + L +
Sbjct: 336 RKLDLGT-----------------------RCLEKLENLQKLDLSHSDIEASDCCNLQLK 372
Query: 326 HLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLS 385
+L LQ+L+LS N+ G P L+ LD++ L V+ P + F NL L L LS
Sbjct: 373 NLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLS 432
Query: 386 NNMFYGEIPSDTQNCSYLRILVLKFNNF-PGAIPKE--ISNLTKLEKLDLQYNRLQGTIP 442
+ + LR L L+ N+F G+I K + + LE L L L
Sbjct: 433 HCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQ 492
Query: 443 YAGH-LFQLQWLDLSDNQLSG-SLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLE 500
A H L + LDLS N L+G S+ + L +L+++SN + P H LP L
Sbjct: 493 QAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL--YLNMASNNIRIIPP----HLLPALS 546
Query: 501 ELYLSN 506
+ + N
Sbjct: 547 QQSIIN 552
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 123/280 (43%), Gaps = 40/280 (14%)
Query: 140 QQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNF-------SGAIP-------------- 178
Q+L L+ G +PS I + L+ LVL N+F + + P
Sbjct: 280 QELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKL 338
Query: 179 ----KEISNLTKLEKLDLQYNKLQGTIP---YAGHLYQLQWLDLSDNQLSGSLPSFKFK- 230
+ + L L+KLDL ++ ++ + +L LQ+L+LS N+ G L FK
Sbjct: 339 DLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLG-LEDQAFKE 397
Query: 231 MPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRF 290
P L+ LD++ L + P + F NL L L LS+ + A LR L L+
Sbjct: 398 CPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQG 457
Query: 291 NNF-SGAIPKE--ISNLTKLEKLDLQYNRLQGTILYVGHLLQ-LQWLDLSDNQLSGSLPS 346
N+F G+I K + + LE L L L H L+ + LDLS N L+G
Sbjct: 458 NSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMD 517
Query: 347 FKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSN 386
++ L +L+++SN + + P H LP L + + N
Sbjct: 518 ALSHLKGL-YLNMASNNIRIIPP----HLLPALSQQSIIN 552
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/360 (26%), Positives = 144/360 (40%), Gaps = 70/360 (19%)
Query: 32 NLTVTIP-SELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFC 90
N+T T+ ++L +++LQ L G + +++L INF NN L P
Sbjct: 34 NVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP---L 85
Query: 91 NHLSNLESLFLKSNMFHGKIP-STLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMF 149
+L+ L + + +N P + L++ L + + D N +L LS N
Sbjct: 86 KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI 145
Query: 150 YGEIPSDIANCSYLRILV-LQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA---- 204
SDI+ S L L L F N + K ++NLT LE+LD+ NK+ A
Sbjct: 146 -----SDISALSGLTSLQQLSFGNQVTDL-KPLANLTTLERLDISSNKVSDISVLAKLTN 199
Query: 205 -----------------GHLYQLQWLDLSDNQLS--GSLPSFKFKMPLLQFLDLSSNRLS 245
G L L L L+ NQL G+L S L LDL++N++S
Sbjct: 200 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTN----LTDLDLANNQIS 255
Query: 246 AELPTNVFHNLPFLEELYLSNNMFYGEIP--------------------SDTANCSYLRI 285
P L L EL L N P S +N L
Sbjct: 256 NLAP---LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY 312
Query: 286 LVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLP 345
L L FNN S P +S+LTKL++L N++ + + +L + WL NQ+S P
Sbjct: 313 LTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-VSSLANLTNINWLSAGHNQISDLTP 369
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 124/285 (43%), Gaps = 41/285 (14%)
Query: 272 EIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQ 331
+I +DTA ++ ++ + N ++ +T L+ L + G + Y+ +L Q+
Sbjct: 15 QIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQIN 73
Query: 332 WLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYG 391
+ S+NQL+ P K L+ L +++N+++ P NL L L L NN
Sbjct: 74 F---SNNQLTDITP-LKNLTKLVDIL-MNNNQIADITP---LANLTNLTGLTLFNNQITD 125
Query: 392 -------------EIPSDT-QNCSYLRILV----LKFNNFPGAIPKEISNLTKLEKLDLQ 433
E+ S+T + S L L L F N + K ++NLT LE+LD+
Sbjct: 126 IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDL-KPLANLTTLERLDIS 184
Query: 434 YNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLD---LSSNRLSTELPT 490
N++ I L L+ L ++NQ+S P + +L LD L+ N+L
Sbjct: 185 SNKVSD-ISVLAKLTNLESLIATNNQISDITP-----LGILTNLDELSLNGNQLK---DI 235
Query: 491 NVFHNLPFLEELYLSNNMFYGEIP-SDTPNCSYLRILVVQFNNFS 534
+L L +L L+NN P S + L++ Q +N S
Sbjct: 236 GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS 280
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 187 LEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSA 246
L++ +L ++ GT+P G L DLS NQL SLP +P L LD+S NRL++
Sbjct: 62 LDRCELTKLQVDGTLPVLGTL------DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS 114
Query: 247 ELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTK 306
LP L L+ELYL N P L L L N+ + ++ L
Sbjct: 115 -LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLEN 173
Query: 307 LEKLDLQYNRL 317
L+ L LQ N L
Sbjct: 174 LDTLLLQENSL 184
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 427 LEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLST 486
L++ +L ++ GT+P G L DLS NQL SLP +P L LD+S NRL T
Sbjct: 62 LDRCELTKLQVDGTLPVLGTL------DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL-T 113
Query: 487 ELPTNVFHNLPFLEELYLSNN 507
LP L L+ELYL N
Sbjct: 114 SLPLGALRGLGELQELYLKGN 134
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 416 AIPKEISNLTKLEKLDLQYNRLQGTIPYAG--HLFQLQWLDLSDNQLSGSLPSFKFKMPL 473
++P L L LD+ +NRL ++P L +LQ L L N+L P P
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 474 LQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFY 510
L+ L L++N L TELP + + L L+ L L N Y
Sbjct: 150 LEKLSLANNDL-TELPAGLLNGLENLDTLLLQENSLY 185
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 72/195 (36%), Gaps = 31/195 (15%)
Query: 262 LYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTI 321
L+LS N+ Y S Y R+ L + + L L LDL +N+LQ
Sbjct: 36 LHLSENLLY--TFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ--- 90
Query: 322 LYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEE 381
SLP +P L LD+S NRL+ LP L L+E
Sbjct: 91 ---------------------SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQE 128
Query: 382 LYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTI 441
LYL N P L L L N+ ++ L L+ L LQ N L TI
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLY-TI 187
Query: 442 P---YAGHLFQLQWL 453
P + HL +L
Sbjct: 188 PKGFFGSHLLPFAFL 202
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Query: 22 RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNAL 81
R+T LN+ LT G L L TLDLS N S+P + +L ++ N L
Sbjct: 56 RLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
Query: 82 FGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDF 130
LP L L+ L+LK N P L+ +L + SL+ ND
Sbjct: 113 T-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDL 160
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALF 82
+T L++S LT L L LQ L L N P + L ++ NN L
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT 161
Query: 83 GELPPNFCNHLSNLESLFLKSNMFH 107
ELP N L NL++L L+ N +
Sbjct: 162 -ELPAGLLNGLENLDTLLLQENSLY 185
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 83/181 (45%), Gaps = 33/181 (18%)
Query: 308 EKLDLQYNRLQ--GTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLS 365
EKLDLQ L + G L +L WL+L NQL ++ L L L++N+L+
Sbjct: 38 EKLDLQSTGLATLSDATFRG-LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96
Query: 366 VELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLT 425
LP VF +L L++LYL N + + P + LT
Sbjct: 97 -SLPLGVFDHLTQLDKLYLGGN---------------------QLKSLPSGV---FDRLT 131
Query: 426 KLEKLDLQYNRLQGTIPYAG--HLFQLQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSN 482
KL++L L N+LQ +IP L LQ L LS NQL S+P F ++ LQ + L N
Sbjct: 132 KLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189
Query: 483 R 483
+
Sbjct: 190 Q 190
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 62/134 (46%), Gaps = 6/134 (4%)
Query: 188 EKLDLQYNKLQGTIPYAG--HLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLS 245
EKLDLQ L T+ A L +L WL+L NQL + L L L++N+L
Sbjct: 38 EKLDLQSTGL-ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL- 95
Query: 246 AELPTNVFHNLPFLEELYLSNNMFYGEIPSDT-ANCSYLRILVLRFNNFSGAIPKEISNL 304
A LP VF +L L++LYL N +PS + L+ L L N L
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154
Query: 305 TKLEKLDLQYNRLQ 318
T L+ L L N+LQ
Sbjct: 155 TNLQTLSLSTNQLQ 168
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 86/194 (44%), Gaps = 20/194 (10%)
Query: 153 IPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQG-TIPYAGHLYQLQ 211
IP+D L LQ + LTKL L+L YN+LQ + L +L
Sbjct: 33 IPADTEK------LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86
Query: 212 WLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFY 270
L L++NQL+ SLP F + L L L N+L + LP+ VF L L+EL L+ N
Sbjct: 87 TLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ 144
Query: 271 GEIPSDT-ANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDL---QYNRLQGTILYVGH 326
IP+ + L+ L L N L KL+ + L Q++ + LY+
Sbjct: 145 -SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCETLYLS- 202
Query: 327 LLQLQWLDLSDNQL 340
QW+ + N++
Sbjct: 203 ----QWIRENSNKV 212
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 410 FNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAG--HLFQLQWLDLSDNQLSGSLPSF 467
++ P IP + EKLDLQ L T+ A L +L WL+L NQL
Sbjct: 26 LDSVPSGIPADT------EKLDLQSTGL-ATLSDATFRGLTKLTWLNLDYNQLQTLSAGV 78
Query: 468 KFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMF 509
+ L L L++N+L++ LP VF +L L++LYL N
Sbjct: 79 FDDLTELGTLGLANNQLAS-LPLGVFDHLTQLDKLYLGGNQL 119
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 43 NLSSLQTLDLSFNWFSGSIPASIFN-MSSLLSINFINNALFGELPPNFCNHLSNLESLFL 101
L+ L L+L +N ++ A +F+ ++ L ++ NN L LP +HL+ L+ L+L
Sbjct: 57 GLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYL 114
Query: 102 KSNMFHGKIPSTLSSCKRLRETSLSLN 128
N +L+E L+ N
Sbjct: 115 GGNQLKSLPSGVFDRLTKLKELRLNTN 141
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 83/181 (45%), Gaps = 33/181 (18%)
Query: 308 EKLDLQYNRLQ--GTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLS 365
EKLDLQ L + G L +L WL+L NQL ++ L L L++N+L+
Sbjct: 38 EKLDLQSTGLATLSDATFRG-LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96
Query: 366 VELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLT 425
LP VF +L L++LYL N + + P + LT
Sbjct: 97 -SLPLGVFDHLTQLDKLYLGGN---------------------QLKSLPSGV---FDRLT 131
Query: 426 KLEKLDLQYNRLQGTIPYAG--HLFQLQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSN 482
KL++L L N+LQ +IP L LQ L LS NQL S+P F ++ LQ + L N
Sbjct: 132 KLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189
Query: 483 R 483
+
Sbjct: 190 Q 190
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 90/224 (40%), Gaps = 63/224 (28%)
Query: 188 EKLDLQYNKLQGTIPYAG--HLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLS 245
EKLDLQ L T+ A L +L WL+L NQL + L L L++N+L
Sbjct: 38 EKLDLQSTGL-ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL- 95
Query: 246 AELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLT 305
A LP VF +L L++LYL N +PS LT
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGV-----------------------FDRLT 131
Query: 306 KLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFN-MPLLQFLDLSSNRL 364
KL++L L N+LQ S+P+ F+ + LQ L LS+N+L
Sbjct: 132 KLKELRLNTNQLQ------------------------SIPAGAFDKLTNLQTLSLSTNQL 167
Query: 365 SVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVL 408
+P F L L+ + L N F +CS IL L
Sbjct: 168 Q-SVPHGAFDRLGKLQTITLFGNQF---------DCSRCEILYL 201
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 153 IPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQG-TIPYAGHLYQLQ 211
IP+D L LQ + LTKL L+L YN+LQ + L +L
Sbjct: 33 IPADTEK------LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86
Query: 212 WLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFY 270
L L++NQL+ SLP F + L L L N+L + LP+ VF L L+EL L+ N
Sbjct: 87 TLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ 144
Query: 271 GEIPSDT-ANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDL---QYNRLQGTILYVGH 326
IP+ + L+ L L N L KL+ + L Q++ + ILY+
Sbjct: 145 -SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLS- 202
Query: 327 LLQLQWLDLSDNQL 340
QW+ + N++
Sbjct: 203 ----QWIRENSNKV 212
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 410 FNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAG--HLFQLQWLDLSDNQLSGSLPSF 467
++ P IP + EKLDLQ L T+ A L +L WL+L NQL
Sbjct: 26 LDSVPSGIPADT------EKLDLQSTGL-ATLSDATFRGLTKLTWLNLDYNQLQTLSAGV 78
Query: 468 KFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMF 509
+ L L L++N+L++ LP VF +L L++LYL N
Sbjct: 79 FDDLTELGTLGLANNQLAS-LPLGVFDHLTQLDKLYLGGNQL 119
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 43 NLSSLQTLDLSFNWFSGSIPASIFN-MSSLLSINFINNALFGELPPNFCNHLSNLESLFL 101
L+ L L+L +N ++ A +F+ ++ L ++ NN L LP +HL+ L+ L+L
Sbjct: 57 GLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYL 114
Query: 102 KSNMFHGKIPSTLSSCKRLRETSLSLN 128
N +L+E L+ N
Sbjct: 115 GGNQLKSLPSGVFDRLTKLKELRLNTN 141
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 95/213 (44%), Gaps = 31/213 (14%)
Query: 310 LDLQYNRLQGTILYV-GHLLQLQWLDLSDNQLSGSLPSFKFN-MPLLQFLDLSSNRLSVE 367
L+LQ N +Q HL L+ L LS N L + FN +P L L+L NRL+
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKN-LVRKIEVGAFNGLPSLNTLELFDNRLTT- 97
Query: 368 LPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKL 427
+PT F L L EL+L NN IPS FN P ++ L +L
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIES-IPS------------YAFNRVPSLRRLDLGELKRL 144
Query: 428 EKL---------DLQYNRLQ----GTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLL 474
E + +L+Y L IP L +L+ L+LS N+L P + L
Sbjct: 145 EYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSL 204
Query: 475 QFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
+ L L +++T + N F +L LEEL LS+N
Sbjct: 205 RKLWLMHAQVAT-IERNAFDDLKSLEELNLSHN 236
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 113/252 (44%), Gaps = 44/252 (17%)
Query: 190 LDLQYNKLQGTIPYA-GHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAEL 248
L+LQ N +Q HL L+ L LS N + +P L L+L NRL+ +
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT-V 98
Query: 249 PTNVFHNLPFLEELYLSNNMF-------YGEIPS-------------DTANCSYLRILVL 288
PT F L L EL+L NN + +PS + ++ ++ L
Sbjct: 99 PTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNL 158
Query: 289 RFNNFSGAIPKEISNLT---KLEKLDLQYNRLQGTILYVGH---LLQLQWLDLSDNQLSG 342
R+ N K+I NLT +LE+L+L NRL ++ G L L+ L L Q++
Sbjct: 159 RYLNLGMCNLKDIPNLTALVRLEELELSGNRLD--LIRPGSFQGLTSLRKLWLMHAQVAT 216
Query: 343 SLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYG----------- 391
+ ++ L+ L+LS N L + LP ++F L LE ++L++N ++
Sbjct: 217 IERNAFDDLKSLEELNLSHNNL-MSLPHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWL 275
Query: 392 --EIPSDTQNCS 401
+PS+T C+
Sbjct: 276 KETVPSNTTCCA 287
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 95/213 (44%), Gaps = 31/213 (14%)
Query: 310 LDLQYNRLQGTILYV-GHLLQLQWLDLSDNQLSGSLPSFKFN-MPLLQFLDLSSNRLSVE 367
L+LQ N +Q HL L+ L LS N L + FN +P L L+L NRL+
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKN-LVRKIEVGAFNGLPSLNTLELFDNRLTT- 97
Query: 368 LPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKL 427
+PT F L L EL+L NN IPS FN P ++ L +L
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIES-IPS------------YAFNRVPSLRRLDLGELKRL 144
Query: 428 EKL---------DLQYNRLQ----GTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLL 474
E + +L+Y L IP L +L+ L+LS N+L P + L
Sbjct: 145 EYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSL 204
Query: 475 QFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
+ L L +++T + N F +L LEEL LS+N
Sbjct: 205 RKLWLMHAQVAT-IERNAFDDLKSLEELNLSHN 236
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 113/252 (44%), Gaps = 44/252 (17%)
Query: 190 LDLQYNKLQGTIPYA-GHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAEL 248
L+LQ N +Q HL L+ L LS N + +P L L+L NRL+ +
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT-V 98
Query: 249 PTNVFHNLPFLEELYLSNNMF-------YGEIPS-------------DTANCSYLRILVL 288
PT F L L EL+L NN + +PS + ++ ++ L
Sbjct: 99 PTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNL 158
Query: 289 RFNNFSGAIPKEISNLT---KLEKLDLQYNRLQGTILYVGH---LLQLQWLDLSDNQLSG 342
R+ N K+I NLT +LE+L+L NRL ++ G L L+ L L Q++
Sbjct: 159 RYLNLGMCNLKDIPNLTALVRLEELELSGNRLD--LIRPGSFQGLTSLRKLWLMHAQVAT 216
Query: 343 SLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYG----------- 391
+ ++ L+ L+LS N L + LP ++F L LE ++L++N ++
Sbjct: 217 IERNAFDDLKSLEELNLSHNNL-MSLPHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWL 275
Query: 392 --EIPSDTQNCS 401
+PS+T C+
Sbjct: 276 KETVPSNTTCCA 287
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 103/373 (27%), Positives = 158/373 (42%), Gaps = 52/373 (13%)
Query: 163 LRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGH-LYQLQWLDL----SD 217
L +L L +NN + + L +LE L+YN +Q ++ H L+ +++L+L +
Sbjct: 260 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 319
Query: 218 NQLS-GSLPS---FKFK-MPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGE 272
+S SLP F F+ + L+ L++ N + + +N+F L L+ L LSN+
Sbjct: 320 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLR 378
Query: 273 IPSDTANCSY----LRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLL 328
++ S L IL L N S S L LE LDL N +G
Sbjct: 379 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE-------IGQ-- 429
Query: 329 QLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNM 388
+L+ + G F+ + ++L L+ N ++ +P L+ L L
Sbjct: 430 -----ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL---------VPSLQRLMLRRVA 475
Query: 389 F--YGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQ-------- 438
PS Q L IL L NN + L KLE LDLQ+N L
Sbjct: 476 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANP 535
Query: 439 -GTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSNRLSTELPTNVFHNL 496
G I + L L L+L N +P FK + L+ +DL N L+T LP +VF+N
Sbjct: 536 GGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNT-LPASVFNNQ 593
Query: 497 PFLEELYLSNNMF 509
L+ L L N+
Sbjct: 594 VSLKSLNLQKNLI 606
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 99/398 (24%), Positives = 164/398 (41%), Gaps = 83/398 (20%)
Query: 153 IPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAG--HLYQL 210
+ ++A+CS+L++ +P ++ T + L+L +N+L+ +P A QL
Sbjct: 14 VSHEVADCSHLKL---------TQVPDDLP--TNITVLNLTHNQLR-RLPAANFTRYSQL 61
Query: 211 QWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFY 270
LD+ N +S P K+P+L+ L+L N LS LS+ F
Sbjct: 62 TSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ-----------------LSDKTF- 103
Query: 271 GEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQL 330
A C+ L L L N+ L LDL +N L T L L+
Sbjct: 104 -------AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 156
Query: 331 QWLDLSDNQLSGSLPSFKFNM---PLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNN 387
L N +L S + ++ L+ L+LSSN++ E FH + L L+L+N
Sbjct: 157 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK-EFSPGCFHAIGRLFGLFLNNV 215
Query: 388 MFYGEIP----------------------SDTQNCSY-------LRILVLKFNNFPGAIP 418
+ S T N ++ L +L L +NN
Sbjct: 216 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 275
Query: 419 KEISNLTKLEKLDLQYNRLQGTIPYAGH-LFQLQWLDL----SDNQLS-GSLPS---FKF 469
+ L +LE L+YN +Q ++ H LF +++L+L + +S SLP F F
Sbjct: 276 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 335
Query: 470 K-MPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSN 506
+ + L+ L++ N + + +N+F L L+ L LSN
Sbjct: 336 QWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSN 372
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 103/373 (27%), Positives = 158/373 (42%), Gaps = 52/373 (13%)
Query: 163 LRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGH-LYQLQWLDL----SD 217
L +L L +NN + + L +LE L+YN +Q ++ H L+ +++L+L +
Sbjct: 255 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 314
Query: 218 NQLS-GSLPS---FKFK-MPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGE 272
+S SLP F F+ + L+ L++ N + + +N+F L L+ L LSN+
Sbjct: 315 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLR 373
Query: 273 IPSDTANCSY----LRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLL 328
++ S L IL L N S S L LE LDL N +G
Sbjct: 374 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE-------IGQ-- 424
Query: 329 QLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNM 388
+L+ + G F+ + ++L L+ N ++ +P L+ L L
Sbjct: 425 -----ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL---------VPSLQRLMLRRVA 470
Query: 389 F--YGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQ-------- 438
PS Q L IL L NN + L KLE LDLQ+N L
Sbjct: 471 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANP 530
Query: 439 -GTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSNRLSTELPTNVFHNL 496
G I + L L L+L N +P FK + L+ +DL N L+T LP +VF+N
Sbjct: 531 GGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNT-LPASVFNNQ 588
Query: 497 PFLEELYLSNNMF 509
L+ L L N+
Sbjct: 589 VSLKSLNLQKNLI 601
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 99/398 (24%), Positives = 164/398 (41%), Gaps = 83/398 (20%)
Query: 153 IPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAG--HLYQL 210
+ ++A+CS+L++ +P ++ T + L+L +N+L+ +P A QL
Sbjct: 9 VSHEVADCSHLKL---------TQVPDDLP--TNITVLNLTHNQLR-RLPAANFTRYSQL 56
Query: 211 QWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFY 270
LD+ N +S P K+P+L+ L+L N LS LS+ F
Sbjct: 57 TSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ-----------------LSDKTF- 98
Query: 271 GEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQL 330
A C+ L L L N+ L LDL +N L T L L+
Sbjct: 99 -------AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 151
Query: 331 QWLDLSDNQLSGSLPSFKFNM---PLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNN 387
L N +L S + ++ L+ L+LSSN++ E FH + L L+L+N
Sbjct: 152 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK-EFSPGCFHAIGRLFGLFLNNV 210
Query: 388 MFYGEIP----------------------SDTQNCSY-------LRILVLKFNNFPGAIP 418
+ S T N ++ L +L L +NN
Sbjct: 211 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 270
Query: 419 KEISNLTKLEKLDLQYNRLQGTIPYAGH-LFQLQWLDL----SDNQLS-GSLPS---FKF 469
+ L +LE L+YN +Q ++ H LF +++L+L + +S SLP F F
Sbjct: 271 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 330
Query: 470 K-MPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSN 506
+ + L+ L++ N + + +N+F L L+ L LSN
Sbjct: 331 QWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSN 367
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 103/373 (27%), Positives = 158/373 (42%), Gaps = 52/373 (13%)
Query: 163 LRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGH-LYQLQWLDL----SD 217
L +L L +NN + + L +LE L+YN +Q ++ H L+ +++L+L +
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309
Query: 218 NQLS-GSLPS---FKFK-MPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGE 272
+S SLP F F+ + L+ L++ N + + +N+F L L+ L LSN+
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLR 368
Query: 273 IPSDTANCSY----LRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLL 328
++ S L IL L N S S L LE LDL N +G
Sbjct: 369 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE-------IGQ-- 419
Query: 329 QLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNM 388
+L+ + G F+ + ++L L+ N ++ +P L+ L L
Sbjct: 420 -----ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL---------VPSLQRLMLRRVA 465
Query: 389 F--YGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQ-------- 438
PS Q L IL L NN + L KLE LDLQ+N L
Sbjct: 466 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANP 525
Query: 439 -GTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSNRLSTELPTNVFHNL 496
G I + L L L+L N +P FK + L+ +DL N L+T LP +VF+N
Sbjct: 526 GGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNT-LPASVFNNQ 583
Query: 497 PFLEELYLSNNMF 509
L+ L L N+
Sbjct: 584 VSLKSLNLQKNLI 596
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 99/398 (24%), Positives = 164/398 (41%), Gaps = 83/398 (20%)
Query: 153 IPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAG--HLYQL 210
+ ++A+CS+L++ +P ++ T + L+L +N+L+ +P A QL
Sbjct: 4 VSHEVADCSHLKL---------TQVPDDLP--TNITVLNLTHNQLR-RLPAANFTRYSQL 51
Query: 211 QWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFY 270
LD+ N +S P K+P+L+ L+L N LS LS+ F
Sbjct: 52 TSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ-----------------LSDKTF- 93
Query: 271 GEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQL 330
A C+ L L L N+ L LDL +N L T L L+
Sbjct: 94 -------AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146
Query: 331 QWLDLSDNQLSGSLPSFKFNM---PLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNN 387
L N +L S + ++ L+ L+LSSN++ E FH + L L+L+N
Sbjct: 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK-EFSPGCFHAIGRLFGLFLNNV 205
Query: 388 MFYGEIP----------------------SDTQNCSY-------LRILVLKFNNFPGAIP 418
+ S T N ++ L +L L +NN
Sbjct: 206 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 265
Query: 419 KEISNLTKLEKLDLQYNRLQGTIPYAGH-LFQLQWLDL----SDNQLS-GSLPS---FKF 469
+ L +LE L+YN +Q ++ H LF +++L+L + +S SLP F F
Sbjct: 266 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 325
Query: 470 K-MPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSN 506
+ + L+ L++ N + + +N+F L L+ L LSN
Sbjct: 326 QWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSN 362
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 122/467 (26%), Positives = 180/467 (38%), Gaps = 86/467 (18%)
Query: 41 LGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSN--LES 98
LGN SSL+ LDLS N P + L ++ N L L C LSN +++
Sbjct: 168 LGN-SSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQN 226
Query: 99 LFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIA 158
L L +N ST S K W N QL LS N + D+
Sbjct: 227 LSLANNQLLATSESTFSGLK-------------W----TNLTQLDLSYNNLH-----DVG 264
Query: 159 NCSY-----LRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWL 213
N S+ LR L L++NN P+ L+ L L L+ + ++ A H
Sbjct: 265 NGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASH------- 317
Query: 214 DLSDNQLSGSLPSFKFK-MPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGE 272
++ F F+ + L++L++ N + + +N F L L+ L LS +
Sbjct: 318 --------PNIDDFSFQWLKYLEYLNMDDNNIPST-KSNTFTGLVSLKYLSLSKTFTSLQ 368
Query: 273 IPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQW 332
++ S +L N I K I+N GT ++G QL+
Sbjct: 369 TLTNETFVSLAHSPLLTLNLTKNHISK-IAN---------------GTFSWLG---QLRI 409
Query: 333 LDLSDNQLSGSLPSFKFNMPLLQF-LDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYG 391
LDL N++ L ++ F + LS N+ ++L T+ F +P L+ L L
Sbjct: 410 LDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKY-LQLSTSSFALVPSLQRLMLRRVALKN 468
Query: 392 -EI-PSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQ 449
+I PS + L IL L NN + L LE LD Q+N L A
Sbjct: 469 VDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRAN---- 524
Query: 450 LQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNL 496
G +F + L L+L SN L E+P VF NL
Sbjct: 525 -----------PGGPVNFLKGLSHLHILNLESNGLD-EIPVGVFKNL 559
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 102/407 (25%), Positives = 166/407 (40%), Gaps = 71/407 (17%)
Query: 114 LSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNF 173
++ C L+ T + D N L L+ N P++ S L IL FN+
Sbjct: 8 VADCSHLKLTHIP------DDLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSI 61
Query: 174 SGAIPKEISNLTKLEKLDLQYNKL----QGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKF 229
S P+ L L+ L+LQ+N+L T + +L +L + S +++ + FK
Sbjct: 62 SKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSN--PFKN 119
Query: 230 KMPLLQFLDLSSNRLSA-ELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVL 288
+ L++ LDLS N LS+ +L T V + +IL L
Sbjct: 120 QKNLIK-LDLSHNGLSSTKLGTGV------------------QLENLQELLLAKNKILAL 160
Query: 289 RFNNFSGAIPKEISNLTKLEKLDLQYNRLQ----GTILYVGHLLQLQWLDLSDNQLSGSL 344
R E + L KLDL N L+ G +G L L L++ QL+ L
Sbjct: 161 RSEEL------EFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALL---LNNAQLNPHL 211
Query: 345 PS---FKFNMPLLQFLDLSSNRLSVELPTNVFHNLPF--LEELYLSNNMFYGEIPSDTQN 399
++ + +Q L L++N+L + + F L + L +L LS N + D N
Sbjct: 212 TEKLCWELSNTSIQNLSLANNQL-LATSESTFSGLKWTNLTQLDLSYNNLH-----DVGN 265
Query: 400 CSY-----LRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHL----FQL 450
S+ LR L L++NN P+ L+ L L L+ + ++ A H F
Sbjct: 266 GSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSF 325
Query: 451 QW------LDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTN 491
QW L++ DN + + + + L++L LS S + TN
Sbjct: 326 QWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTN 372
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 92/380 (24%), Positives = 143/380 (37%), Gaps = 65/380 (17%)
Query: 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALF 82
+T LN++ L P+ S L LD FN S
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSIS------------------------ 62
Query: 83 GELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHT-----KR 137
+L P C L L+ L L+ N T C L E L N + ++
Sbjct: 63 -KLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQK 121
Query: 138 NWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNL--TKLEKLDLQYN 195
N +L LS N L+ L+L N +E+ L + L KLDL N
Sbjct: 122 NLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSN 181
Query: 196 KLQ----GTIPYAGHLYQLQWLDLSDNQLSGSLPS---FKFKMPLLQFLDLSSNRLSAEL 248
L+ G G L+ L L++ QL+ L ++ +Q L L++N+L A
Sbjct: 182 PLKEFSPGCFQTIGKLFALL---LNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLAT- 237
Query: 249 PTNVFHNLPF--LEELYLSNNMFYGEIPSDTANCSY-----LRILVLRFNNFSGAIPKEI 301
+ F L + L +L LS N + D N S+ LR L L +NN P+
Sbjct: 238 SESTFSGLKWTNLTQLDLSYNNLH-----DVGNGSFSYLPSLRYLSLEYNNIQRLSPRSF 292
Query: 302 SNLTKLEKLDLQYNRLQGTILYVGH----------LLQLQWLDLSDNQLSGSLPSFKFNM 351
L+ L L L+ + ++ H L L++L++ DN + + + +
Sbjct: 293 YGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGL 352
Query: 352 PLLQFLDLSSNRLSVELPTN 371
L++L LS S++ TN
Sbjct: 353 VSLKYLSLSKTFTSLQTLTN 372
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 123/277 (44%), Gaps = 34/277 (12%)
Query: 140 QQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEI-SNLTKLEKLDLQYNKLQ 198
++L L++N+ P N LR L L+ N IP + + L+ L KLD+ NK+
Sbjct: 59 EELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV 117
Query: 199 GTIPYA-GHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNV---FH 254
+ Y LY L+ L++ DN L + L+ L L L++ +PT H
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IPTEALSHLH 176
Query: 255 NLPFLEELYLSNNMF------------------YGEIPSDTANCSY---LRILVLRFNNF 293
L L +L+ N + + + T NC Y L L + N
Sbjct: 177 GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL 236
Query: 294 SGAIPKEISNLTKLEKLDLQYN---RLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFN 350
+ + +L L L+L YN ++G++L+ LL+LQ + L QL+ P
Sbjct: 237 TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH--ELLRLQEIQLVGGQLAVVEPYAFRG 294
Query: 351 MPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNN 387
+ L+ L++S N+L+ L +VFH++ LE L L +N
Sbjct: 295 LNYLRVLNVSGNQLTT-LEESVFHSVGNLETLILDSN 330
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 125/305 (40%), Gaps = 56/305 (18%)
Query: 235 QFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFS 294
+ LDL NR+ L + F + P LEEL L+ N+ P N LR L LR N
Sbjct: 35 RLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93
Query: 295 GAIPKEI-SNLTKLEKLDLQYNRLQGTILYV-GHLLQLQWLDLSDNQL--------SG-- 342
IP + + L+ L KLD+ N++ + Y+ L L+ L++ DN L SG
Sbjct: 94 -LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152
Query: 343 -------------SLP----SFKFNMPLLQFLDLSSNRLS-------VELPTNVFHNLPF 378
S+P S + +L+ L+ N + L + P+
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212
Query: 379 LEELYLSNNMFYG--------------EIPS-DTQNCSYLRILVLKFNNFPGAIPKEISN 423
L+ + + N YG +P ++ YLR L L +N +
Sbjct: 213 LDTM--TPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270
Query: 424 LTKLEKLDLQYNRLQGTIPYA-GHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSN 482
L +L+++ L +L PYA L L+ L++S NQL+ S + L+ L L SN
Sbjct: 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330
Query: 483 RLSTE 487
L+ +
Sbjct: 331 PLACD 335
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 84/335 (25%), Positives = 141/335 (42%), Gaps = 18/335 (5%)
Query: 142 LYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTI 201
L L KN + A+ +L L L N S P +NL L L L+ N+L+ I
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LI 95
Query: 202 P---YAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPF 258
P + G L L LD+S+N++ L + L+ L++ N L + F L
Sbjct: 96 PLGVFTG-LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL-VYISHRAFSGLNS 153
Query: 259 LEELYLSNNMFYGEIPSDT-ANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQY--- 314
LE+L L IP++ ++ L +L LR N + L +L+ L++ +
Sbjct: 154 LEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212
Query: 315 -NRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVF 373
+ + LY L L L ++ L+ ++ L+FL+LS N +S + ++
Sbjct: 213 LDTMTPNCLYG---LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST-IEGSML 268
Query: 374 HNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQ 433
H L L+E+ L P + +YLR+L + N ++ LE L L
Sbjct: 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328
Query: 434 YNRLQGTIPYAGHLFQLQW-LDLSDNQLSGSLPSF 467
N L +F+ +W L+ + Q + + P F
Sbjct: 329 SNPLACDCRLLW-VFRRRWRLNFNRQQPTCATPEF 362
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 78/187 (41%), Gaps = 29/187 (15%)
Query: 68 MSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFH--GKIPSTLSSCKRLRETSL 125
+S L ++F NN L + N C HL+ LE+L L+ N KI + K L++ +
Sbjct: 323 ISPFLHLDFSNNLLTDTVFEN-CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381
Query: 126 SLNDFFWDHTKRN--WQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISN 183
S N +D K + W + LS NM + I C RI VL
Sbjct: 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVL--------------- 426
Query: 184 LTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSN 242
DL NK++ L LQ L+++ NQL S+P F ++ LQ + L +N
Sbjct: 427 -------DLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTN 478
Query: 243 RLSAELP 249
P
Sbjct: 479 PWDCSCP 485
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 68/166 (40%), Gaps = 34/166 (20%)
Query: 190 LDLQYNKLQGTI-PYAGHLYQLQWLDLSDNQLS--GSLPSFKFKMPLLQFLDLSSNRLSA 246
LD N L T+ GHL +L+ L L NQL + +M LQ LD+S N +S
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS- 387
Query: 247 ELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLT- 305
Y E D CS+ + L L N S + I
Sbjct: 388 -----------------------YDEKKGD---CSWTKSL-LSLNMSSNILTDTIFRCLP 420
Query: 306 -KLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFN 350
+++ LDL N+++ V L LQ L+++ NQL S+P F+
Sbjct: 421 PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFD 465
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 114/440 (25%), Positives = 175/440 (39%), Gaps = 85/440 (19%)
Query: 142 LYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTI 201
L +S+N SDI + S LRIL++ N +LE LDL +NKL +
Sbjct: 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL---V 82
Query: 202 PYAGH-LYQLQWLDLSDNQLSGSLPSFK--FKMPLLQFLDLSSNRL--SAELPT---NVF 253
+ H L+ LDLS N LP K M L+FL LS+ L S+ LP N+
Sbjct: 83 KISCHPTVNLKHLDLSFNAFDA-LPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNIS 141
Query: 254 HNLPFLEELY-----------LSNNMFYGEIPSDTA-----NCSYLRILVLRFNNFSGAI 297
L L E Y + + P++ + S + L +N +
Sbjct: 142 KVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL 201
Query: 298 PKE-----ISNLTKLE---KL-DLQYNRLQGTILYVGHLLQLQW------LDLSDNQLSG 342
+S L KL+ KL +L N ++ T +LQL W +S+ +L G
Sbjct: 202 EDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQG 261
Query: 343 SLPSFKFNMPLLQFLDLSSNRLSVEL---PTN----VFHNLPFLEELYLSNNMFYGEIPS 395
L F+ LS +++ ++ P + +F N+ M + PS
Sbjct: 262 QLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPS 321
Query: 396 DTQNCSYLRILVLKFNN--FPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQ---L 450
L L F+N + + +LT+LE L LQ N+L+ A Q L
Sbjct: 322 KIS-----PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL 376
Query: 451 QWLDLSDNQLS-----------GSLPS------------FKFKMPLLQFLDLSSNRLSTE 487
Q LD+S N +S SL S F+ P ++ LDL SN++ +
Sbjct: 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKS- 435
Query: 488 LPTNVFHNLPFLEELYLSNN 507
+P V L L+EL +++N
Sbjct: 436 IPKQVV-KLEALQELNVASN 454
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 72/184 (39%), Gaps = 31/184 (16%)
Query: 310 LDLQYNRLQGTILY-VGHLLQLQWLDLSDNQLS--GSLPSFKFNMPLLQFLDLSSNRLSV 366
LD N L T+ GHL +L+ L L NQL + M LQ LD+S N +S
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 367 ELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTK 426
+ L L +S+N+ I F P +
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTI----------------FRCLP----------PR 422
Query: 427 LEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLS 485
++ LDL N+++ L LQ L+++ NQL S+P F ++ LQ + L +N
Sbjct: 423 IKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 481
Query: 486 TELP 489
P
Sbjct: 482 CSCP 485
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 83/182 (45%), Gaps = 35/182 (19%)
Query: 305 TKLEKLDLQYNRLQGTILYV-GHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNR 363
T+L +L+L +R + T L V G L L LDLS NQL SLP +P L LD+S NR
Sbjct: 55 TRLTQLNL--DRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR 111
Query: 364 LSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISN 423
L+ LP L L+ELYL N + P P ++
Sbjct: 112 LT-SLPLGALRGLGELQELYLKGN---------------------ELKTLP---PGLLTP 146
Query: 424 LTKLEKLDLQYNRLQGTIPYAGHLFQLQWLD---LSDNQLSGSLPSFKFKMPLLQFLDLS 480
KLEKL L N+L +P AG L L+ LD L +N L ++P F LL F L
Sbjct: 147 TPKLEKLSLANNQLT-ELP-AGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLH 203
Query: 481 SN 482
N
Sbjct: 204 GN 205
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 416 AIPKEISNLTKLEKLDLQYNRLQGTIPYAG--HLFQLQWLDLSDNQLSGSLPSFKFKMPL 473
++P L L LD+ +NRL ++P L +LQ L L N+L P P
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 474 LQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFY 510
L+ L L++N+L TELP + + L L+ L L N Y
Sbjct: 150 LEKLSLANNQL-TELPAGLLNGLENLDTLLLQENSLY 185
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 12/138 (8%)
Query: 135 TKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQY 194
T+ N + L+K G +P L L L N ++P L L LD+ +
Sbjct: 58 TQLNLDRCELTKLQVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF 109
Query: 195 NKLQGTIPYAG--HLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNV 252
N+L ++P L +LQ L L N+L P P L+ L L++N+L+ ELP +
Sbjct: 110 NRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGL 167
Query: 253 FHNLPFLEELYLSNNMFY 270
+ L L+ L L N Y
Sbjct: 168 LNGLENLDTLLLQENSLY 185
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 71/195 (36%), Gaps = 31/195 (15%)
Query: 262 LYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTI 321
L+LS N+ Y S Y R+ L + + L L LDL +N+LQ
Sbjct: 36 LHLSENLLYTF--SLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ--- 90
Query: 322 LYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEE 381
SLP +P L LD+S NRL+ LP L L+E
Sbjct: 91 ---------------------SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQE 128
Query: 382 LYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTI 441
LYL N P L L L N ++ L L+ L LQ N L TI
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY-TI 187
Query: 442 P---YAGHLFQLQWL 453
P + HL +L
Sbjct: 188 PKGFFGSHLLPFAFL 202
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Query: 22 RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNAL 81
R+T LN+ LT G L L TLDLS N S+P + +L ++ N L
Sbjct: 56 RLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
Query: 82 FGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDF 130
LP L L+ L+LK N P L+ +L + SL+ N
Sbjct: 113 T-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALF 82
+T L++S LT L L LQ L L N P + L ++ NN L
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 83 GELPPNFCNHLSNLESLFLKSNMFH 107
ELP N L NL++L L+ N +
Sbjct: 162 -ELPAGLLNGLENLDTLLLQENSLY 185
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 83/182 (45%), Gaps = 35/182 (19%)
Query: 305 TKLEKLDLQYNRLQGTILYV-GHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNR 363
T+L +L+L +R + T L V G L L LDLS NQL SLP +P L LD+S NR
Sbjct: 55 TRLTQLNL--DRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR 111
Query: 364 LSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISN 423
L+ LP L L+ELYL N + P P ++
Sbjct: 112 LT-SLPLGALRGLGELQELYLKGN---------------------ELKTLP---PGLLTP 146
Query: 424 LTKLEKLDLQYNRLQGTIPYAGHLFQLQWLD---LSDNQLSGSLPSFKFKMPLLQFLDLS 480
KLEKL L N+L +P AG L L+ LD L +N L ++P F LL F L
Sbjct: 147 TPKLEKLSLANNQLT-ELP-AGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLH 203
Query: 481 SN 482
N
Sbjct: 204 GN 205
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 416 AIPKEISNLTKLEKLDLQYNRLQGTIPYAG--HLFQLQWLDLSDNQLSGSLPSFKFKMPL 473
++P L L LD+ +NRL ++P L +LQ L L N+L P P
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 474 LQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFY 510
L+ L L++N+L TELP + + L L+ L L N Y
Sbjct: 150 LEKLSLANNQL-TELPAGLLNGLENLDTLLLQENSLY 185
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 12/138 (8%)
Query: 135 TKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQY 194
T+ N + L+K G +P L L L N ++P L L LD+ +
Sbjct: 58 TQLNLDRCELTKLQVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF 109
Query: 195 NKLQGTIPYAG--HLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNV 252
N+L ++P L +LQ L L N+L P P L+ L L++N+L+ ELP +
Sbjct: 110 NRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGL 167
Query: 253 FHNLPFLEELYLSNNMFY 270
+ L L+ L L N Y
Sbjct: 168 LNGLENLDTLLLQENSLY 185
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 71/195 (36%), Gaps = 31/195 (15%)
Query: 262 LYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTI 321
L+LS N+ Y S Y R+ L + + L L LDL +N+LQ
Sbjct: 36 LHLSENLLYTF--SLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ--- 90
Query: 322 LYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEE 381
SLP +P L LD+S NRL+ LP L L+E
Sbjct: 91 ---------------------SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQE 128
Query: 382 LYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTI 441
LYL N P L L L N ++ L L+ L LQ N L TI
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY-TI 187
Query: 442 P---YAGHLFQLQWL 453
P + HL +L
Sbjct: 188 PKGFFGSHLLPFAFL 202
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Query: 22 RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNAL 81
R+T LN+ LT G L L TLDLS N S+P + +L ++ N L
Sbjct: 56 RLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
Query: 82 FGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDF 130
LP L L+ L+LK N P L+ +L + SL+ N
Sbjct: 113 T-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALF 82
+T L++S LT L L LQ L L N P + L ++ NN L
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 83 GELPPNFCNHLSNLESLFLKSNMFH 107
ELP N L NL++L L+ N +
Sbjct: 162 -ELPAGLLNGLENLDTLLLQENSLY 185
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 85/187 (45%), Gaps = 38/187 (20%)
Query: 354 LQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNF 413
L +L L+ N+L LP VF L L+EL L N + +
Sbjct: 87 LTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVEN---------------------QLQSL 124
Query: 414 PGAIPKEISNLTKLEKLDLQYNRLQGTIPYA--GHLFQLQWLDLSDNQLSGSLPSFKF-K 470
P + +++NLT L +L +N+LQ ++P L L LDLS NQL SLP F K
Sbjct: 125 PDGVFDKLTNLTYL---NLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDK 179
Query: 471 MPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQF 530
+ L+ L L N+L + +P VF L L+ ++L +N P D C +R L
Sbjct: 180 LTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDN------PWDC-TCPGIRYLSEWI 231
Query: 531 NNFSGAI 537
N SG +
Sbjct: 232 NKHSGVV 238
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 65/138 (47%), Gaps = 13/138 (9%)
Query: 163 LRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA--GHLYQLQWLDLSDNQL 220
L+ LVL N LT L L+L +N+LQ ++P L L LDLS NQL
Sbjct: 111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQL 169
Query: 221 SGSLPSFKF-KMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTAN 279
SLP F K+ L+ L L N+L + +P VF L L+ ++L +N P D
Sbjct: 170 Q-SLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDN------PWD-CT 220
Query: 280 CSYLRILVLRFNNFSGAI 297
C +R L N SG +
Sbjct: 221 CPGIRYLSEWINKHSGVV 238
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 69/143 (48%), Gaps = 14/143 (9%)
Query: 234 LQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDT----ANCSYLRILVLR 289
L +L L+ N+L + LP VF L L+EL L N +P N +YL +
Sbjct: 87 LTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNL---- 140
Query: 290 FNNFSGAIPKEI-SNLTKLEKLDLQYNRLQGTILYV-GHLLQLQWLDLSDNQLSGSLPSF 347
+N ++PK + LT L +LDL YN+LQ V L QL+ L L NQL S+P
Sbjct: 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SVPDG 199
Query: 348 KFN-MPLLQFLDLSSNRLSVELP 369
F+ + LQ++ L N P
Sbjct: 200 VFDRLTSLQYIWLHDNPWDCTCP 222
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 17/132 (12%)
Query: 157 IANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA--GHLYQLQWLD 214
+ N +YL + Q + + +++NLT+L DL YN+LQ ++P L QL+ L
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL---DLSYNQLQ-SLPEGVFDKLTQLKDLR 187
Query: 215 LSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFY--- 270
L NQL S+P F ++ LQ++ L N P + +L E ++
Sbjct: 188 LYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP-----GIRYLSEWINKHSGVVRNS 241
Query: 271 -GEIPSDTANCS 281
G + D+A CS
Sbjct: 242 AGSVAPDSAKCS 253
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 108/424 (25%), Positives = 171/424 (40%), Gaps = 71/424 (16%)
Query: 113 TLSSCKRLRETSLS-LNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFN 171
+L+S L ETS S L D + ++ L + N F G S L IL L +N
Sbjct: 38 SLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRG--------LSSLIILKLDYN 89
Query: 172 NFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQ----LQWLDLSDNQLSGSLP-S 226
F + L LE L L L G + +G+ ++ L+ L L DN + P S
Sbjct: 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAV-LSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148
Query: 227 FKFKMPLLQFLDLSSNRLSAELPTNVFH------NLPFLEELYLS--NNMFYG-EIPSDT 277
F M LDL+ N++ + ++ + L L + L N + G E +
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208
Query: 278 ANCSYLRILVLRFNNFSGAIPKEISNL---TKLEKLDLQYNRLQGTILYVGHLLQLQWLD 334
+ + L L N F ++ K + TK++ L L + G+ GH + D
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS--SFGHT---NFKD 263
Query: 335 LSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIP 394
+ G ++ DLS +++ L +VF + LE+L L+ N EI
Sbjct: 264 PDNFTFKG------LEASGVKTCDLSKSKI-FALLKSVFSHFTDLEQLTLAQN----EIN 312
Query: 395 SDTQNCSYLRILVLKFN---NFPGAIPKEI-SNLTKLEKLDLQYNRLQGTIPYAGHLFQL 450
N + +LK N NF G+I + NL KLE LDL YN ++
Sbjct: 313 KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA----------- 361
Query: 451 QWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFY 510
L D G +P L+ L L +N+L + +P +F L L++++L N +
Sbjct: 362 ----LGDQSFLG--------LPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 408
Query: 511 GEIP 514
P
Sbjct: 409 CSCP 412
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 99/245 (40%), Gaps = 59/245 (24%)
Query: 45 SSLQTLDLSFNWFSGSIPASIFNM-------SSLLSINFINNALFGEL----PPNFCNHL 93
+S+ TLDLS N F S+ F+ S +LS ++ + FG P NF
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF---- 267
Query: 94 SNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEI 153
F G S + +C + +L + H + +QL L++N EI
Sbjct: 268 -----------TFKGLEASGVKTCDLSKSKIFALLKSVFSHFT-DLEQLTLAQN----EI 311
Query: 154 PSDIANCSYLRILVLQFN---NFSGAIPKEI-SNLTKLEKLDLQYNKLQGTIPYAGHLYQ 209
N + +L+ N NF G+I + NL KLE LDL YN ++
Sbjct: 312 NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA---------- 361
Query: 210 LQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMF 269
L D G +P L+ L L +N+L + +P +F L L++++L N +
Sbjct: 362 -----LGDQSFLG--------LPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPW 407
Query: 270 YGEIP 274
P
Sbjct: 408 DCSCP 412
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 87/353 (24%), Positives = 133/353 (37%), Gaps = 56/353 (15%)
Query: 209 QLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNR------------LSA---------- 246
+ ++DLS N ++ + ++ LQFL + LS+
Sbjct: 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90
Query: 247 --ELPTNVFHNLPFLEELYLSNNMFYGEIPSDT--ANCSYLRILVLRFNNFSGAIPKE-I 301
+L T F+ L LE L L+ G + S + L +LVLR NN P
Sbjct: 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150
Query: 302 SNLTKLEKLDLQYNRL-----------QGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFN 350
N+ + LDL +N++ QG + L + D+++ L F
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210
Query: 351 MPLLQFLDLSSNRLSVELPTNVFHNLPF--LEELYLSNNMFYGEIPSDTQ---------- 398
+ LDLS N + F + ++ L LSN+ G T
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270
Query: 399 --NCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA-GHLFQLQWLDL 455
S ++ L + + S+ T LE+L L N + A L L L+L
Sbjct: 271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL 330
Query: 456 SDNQLSGSLPSFKFK-MPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
S N L GS+ S F+ + L+ LDLS N + L F LP L+EL L N
Sbjct: 331 SQNFL-GSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDTN 381
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 83/182 (45%), Gaps = 35/182 (19%)
Query: 305 TKLEKLDLQYNRLQGTILYV-GHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNR 363
T+L +L+L +R + T L V G L L LDLS NQL SLP +P L LD+S NR
Sbjct: 55 TRLTQLNL--DRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR 111
Query: 364 LSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISN 423
L+ LP L L+ELYL N + P P ++
Sbjct: 112 LT-SLPLGALRGLGELQELYLKGN---------------------ELKTLP---PGLLTP 146
Query: 424 LTKLEKLDLQYNRLQGTIPYAGHLFQLQWLD---LSDNQLSGSLPSFKFKMPLLQFLDLS 480
KLEKL L N+L +P AG L L+ LD L +N L ++P F LL F L
Sbjct: 147 TPKLEKLSLANNQLT-ELP-AGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLH 203
Query: 481 SN 482
N
Sbjct: 204 GN 205
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 416 AIPKEISNLTKLEKLDLQYNRLQGTIPYAG--HLFQLQWLDLSDNQLSGSLPSFKFKMPL 473
++P L L LD+ +NRL ++P L +LQ L L N+L P P
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 474 LQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFY 510
L+ L L++N+L TELP + + L L+ L L N Y
Sbjct: 150 LEKLSLANNQL-TELPAGLLNGLENLDTLLLQENSLY 185
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 12/138 (8%)
Query: 135 TKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQY 194
T+ N + L+K G +P L L L N ++P L L LD+ +
Sbjct: 58 TQLNLDRCELTKLQVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF 109
Query: 195 NKLQGTIPYAG--HLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNV 252
N+L ++P L +LQ L L N+L P P L+ L L++N+L+ ELP +
Sbjct: 110 NRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGL 167
Query: 253 FHNLPFLEELYLSNNMFY 270
+ L L+ L L N Y
Sbjct: 168 LNGLENLDTLLLQENSLY 185
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 71/195 (36%), Gaps = 31/195 (15%)
Query: 262 LYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTI 321
L+LS N+ Y S Y R+ L + + L L LDL +N+LQ
Sbjct: 36 LHLSENLLY--TFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ--- 90
Query: 322 LYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEE 381
SLP +P L LD+S NRL+ LP L L+E
Sbjct: 91 ---------------------SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQE 128
Query: 382 LYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTI 441
LYL N P L L L N ++ L L+ L LQ N L TI
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY-TI 187
Query: 442 P---YAGHLFQLQWL 453
P + HL +L
Sbjct: 188 PKGFFGSHLLPFAFL 202
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Query: 22 RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNAL 81
R+T LN+ LT G L L TLDLS N S+P + +L ++ N L
Sbjct: 56 RLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
Query: 82 FGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDF 130
LP L L+ L+LK N P L+ +L + SL+ N
Sbjct: 113 T-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALF 82
+T L++S LT L L LQ L L N P + L ++ NN L
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 83 GELPPNFCNHLSNLESLFLKSNMFH 107
ELP N L NL++L L+ N +
Sbjct: 162 -ELPAGLLNGLENLDTLLLQENSLY 185
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 83/182 (45%), Gaps = 35/182 (19%)
Query: 305 TKLEKLDLQYNRLQGTILYV-GHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNR 363
T+L +L+L +R + T L V G L L LDLS NQL SLP +P L LD+S NR
Sbjct: 55 TRLTQLNL--DRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR 111
Query: 364 LSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISN 423
L+ LP L L+ELYL N + P P ++
Sbjct: 112 LT-SLPLGALRGLGELQELYLKGN---------------------ELKTLP---PGLLTP 146
Query: 424 LTKLEKLDLQYNRLQGTIPYAGHLFQLQWLD---LSDNQLSGSLPSFKFKMPLLQFLDLS 480
KLEKL L N+L +P AG L L+ LD L +N L ++P F LL F L
Sbjct: 147 TPKLEKLSLANNQLT-ELP-AGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLH 203
Query: 481 SN 482
N
Sbjct: 204 GN 205
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 416 AIPKEISNLTKLEKLDLQYNRLQGTIPYAG--HLFQLQWLDLSDNQLSGSLPSFKFKMPL 473
++P L L LD+ +NRL ++P L +LQ L L N+L P P
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 474 LQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFY 510
L+ L L++N+L TELP + + L L+ L L N Y
Sbjct: 150 LEKLSLANNQL-TELPAGLLNGLENLDTLLLQENSLY 185
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 12/138 (8%)
Query: 135 TKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQY 194
T+ N + L+K G +P L L L N ++P L L LD+ +
Sbjct: 58 TQLNLDRCELTKLQVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF 109
Query: 195 NKLQGTIPYAG--HLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNV 252
N+L ++P L +LQ L L N+L P P L+ L L++N+L+ ELP +
Sbjct: 110 NRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGL 167
Query: 253 FHNLPFLEELYLSNNMFY 270
+ L L+ L L N Y
Sbjct: 168 LNGLENLDTLLLQENSLY 185
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 71/195 (36%), Gaps = 31/195 (15%)
Query: 262 LYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTI 321
L+LS N+ Y S Y R+ L + + L L LDL +N+LQ
Sbjct: 36 LHLSENLLY--TFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ--- 90
Query: 322 LYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEE 381
SLP +P L LD+S NRL+ LP L L+E
Sbjct: 91 ---------------------SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQE 128
Query: 382 LYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTI 441
LYL N P L L L N ++ L L+ L LQ N L TI
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY-TI 187
Query: 442 P---YAGHLFQLQWL 453
P + HL +L
Sbjct: 188 PKGFFGSHLLPFAFL 202
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Query: 22 RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNAL 81
R+T LN+ LT G L L TLDLS N S+P + +L ++ N L
Sbjct: 56 RLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
Query: 82 FGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDF 130
LP L L+ L+LK N P L+ +L + SL+ N
Sbjct: 113 T-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALF 82
+T L++S LT L L LQ L L N P + L ++ NN L
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 83 GELPPNFCNHLSNLESLFLKSNMFH 107
ELP N L NL++L L+ N +
Sbjct: 162 -ELPAGLLNGLENLDTLLLQENSLY 185
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 113/240 (47%), Gaps = 37/240 (15%)
Query: 297 IPKEISNLTKLEKLDLQYNRLQGTILYVG---HLLQLQWLDLSDNQLSGSLPSFKFN-MP 352
+P IS T+L L+L N++Q I+ V HL L+ L LS N + ++ FN +
Sbjct: 58 VPDGISTNTRL--LNLHENQIQ--IIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLA 112
Query: 353 LLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMF-------YGEIPS-------DTQ 398
L L+L NRL+ +P F L L+EL+L NN + IPS + +
Sbjct: 113 NLNTLELFDNRLTT-IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK 171
Query: 399 NCSYLR------ILVLKFNNFPGAIPKEISNLTK---LEKLDLQYNRLQGTIP--YAGHL 447
SY+ + L++ N +EI NLT L++LDL N L P + G L
Sbjct: 172 RLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQG-L 230
Query: 448 FQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
LQ L + +Q+ + + L ++L+ N L T LP ++F L LE ++L +N
Sbjct: 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL-TLLPHDLFTPLHHLERIHLHHN 289
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 98/233 (42%), Gaps = 47/233 (20%)
Query: 177 IPKEISNLTKLEKLDLQYNKLQG-TIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQ 235
+P IS T+L L+L N++Q + HL L+ L LS N + + L
Sbjct: 58 VPDGISTNTRL--LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLN 115
Query: 236 FLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMF-------YGEIPS-------DTANCS 281
L+L NRL+ +P F L L+EL+L NN + IPS + S
Sbjct: 116 TLELFDNRLTT-IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS 174
Query: 282 YLR------ILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDL 335
Y+ + LR+ N + +EI NLT L KLD LDL
Sbjct: 175 YISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLD--------------------ELDL 214
Query: 336 SDNQLSGSLP-SFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNN 387
S N LS P SF+ M L + + S +E N F NL L E+ L++N
Sbjct: 215 SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE--RNAFDNLQSLVEINLAHN 265
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 92/209 (44%), Gaps = 20/209 (9%)
Query: 225 PSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLR 284
P F++ LQ + + L ELP + LE L L+ N +P+ A+ + LR
Sbjct: 97 PDQAFRLSHLQHXTIDAAGLX-ELP-DTXQQFAGLETLTLARNPLRA-LPASIASLNRLR 153
Query: 285 ILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSL 344
L +R +P+ +++ QG + L+L+W + SL
Sbjct: 154 ELSIRACPELTELPEPLASTDA-------SGEHQGLVNLQS--LRLEWTGIR------SL 198
Query: 345 PSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLR 404
P+ N+ L+ L + ++ LS P H+LP LEEL L P + L+
Sbjct: 199 PASIANLQNLKSLKIRNSPLSALGP--AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256
Query: 405 ILVLKFNNFPGAIPKEISNLTKLEKLDLQ 433
L+LK + +P +I LT+LEKLDL+
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLR 285
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 77/172 (44%), Gaps = 14/172 (8%)
Query: 152 EIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQY--------NKLQGTIPY 203
E+P + L L L N A+P I++L +L +L ++ L T
Sbjct: 118 ELPDTXQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176
Query: 204 AGH--LYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEE 261
H L LQ L L + SLP+ + L+ L + ++ LSA P H+LP LEE
Sbjct: 177 GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGP--AIHHLPKLEE 233
Query: 262 LYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQ 313
L L P + L+ L+L+ + +P +I LT+LEKLDL+
Sbjct: 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 416 AIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSD-NQLSGSLPSFKFKMPLL 474
++P I+NL L+ L ++ + L P HL +L+ LDL L P F + PL
Sbjct: 197 SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256
Query: 475 QFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPS 515
+ + + L T LP ++ H L LE+L L + +PS
Sbjct: 257 RLILKDCSNLLT-LPLDI-HRLTQLEKLDLRGCVNLSRLPS 295
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 63/155 (40%), Gaps = 46/155 (29%)
Query: 39 SELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLES 98
E L +LQ+L L + S+PASI N+ +L S+ N+ L P +HL LE
Sbjct: 177 GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGP--AIHHLPKLEE 233
Query: 99 LFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIA 158
L L+ C L RN+ +F G P
Sbjct: 234 LDLR-------------GCTAL----------------RNY------PPIFGGRAP---- 254
Query: 159 NCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQ 193
L+ L+L+ + +P +I LT+LEKLDL+
Sbjct: 255 ----LKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 119/279 (42%), Gaps = 44/279 (15%)
Query: 234 LQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNF 293
L++L+L+ N+++ P NL L LY+ N S N + LR L L +N
Sbjct: 68 LEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNI 122
Query: 294 SGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPL 353
S P ++NLTK L+L N + + + L +L ++++++ P
Sbjct: 123 SDISP--LANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTP-------- 172
Query: 354 LQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNF 413
NL L L L+ N E S + + L N
Sbjct: 173 -------------------IANLTDLYSLSLNYNQI--EDISPLASLTSLHYFTAYVNQI 211
Query: 414 PGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPL 473
P ++N T+L L + N++ P A +L QL WL++ NQ+S + + K +
Sbjct: 212 TDITP--VANXTRLNSLKIGNNKITDLSPLA-NLSQLTWLEIGTNQIS-DINAVK-DLTK 266
Query: 474 LQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGE 512
L+ L++ SN++S +V +NL L L+L+NN E
Sbjct: 267 LKXLNVGSNQIS---DISVLNNLSQLNSLFLNNNQLGNE 302
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 120/294 (40%), Gaps = 60/294 (20%)
Query: 68 MSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHG--KIP--STLSSCKRLRET 123
++S+ I ++ N + L N +S L +L +N++ G KI S L + LRE
Sbjct: 56 VASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLREL 115
Query: 124 SLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIA---NCSYLRILVLQFNNFSGAIPKE 180
L+ ++ N + Y S N+ SD++ N + L L + + P
Sbjct: 116 YLNEDNISDISPLANLTKXY-SLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTP-- 172
Query: 181 ISNLTKLEKLDLQYNKLQGTIPYA------------------------------------ 204
I+NLT L L L YN+++ P A
Sbjct: 173 IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNK 232
Query: 205 -------GHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLP 257
+L QL WL++ NQ+S + + K + L+ L++ SN++S +V +NL
Sbjct: 233 ITDLSPLANLSQLTWLEIGTNQIS-DINAVK-DLTKLKXLNVGSNQIS---DISVLNNLS 287
Query: 258 FLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLD 311
L L+L+NN E + L L L N+ + P +++L+K + D
Sbjct: 288 QLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP--LASLSKXDSAD 339
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 327 LLQLQWLDLSDNQLSGSLPSFKFN-MPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLS 385
L+ L+ L L NQL G+LP F+ + L LDL +N+L+V LP+ VF L L+EL++
Sbjct: 63 LINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTV-LPSAVFDRLVHLKELFMC 120
Query: 386 NNMFYGEIPSDTQNCSYLRILVLKFNNF 413
N E+P + ++L L L N
Sbjct: 121 CNKLT-ELPRGIERLTHLTHLALDQNQL 147
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 10/131 (7%)
Query: 409 KFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFK 468
+ + P IP +N L D Q +L+ + L L+ L L NQL G+LP
Sbjct: 30 RHASVPAGIP---TNAQILYLHDNQITKLEPGV--FDSLINLKELYLGSNQL-GALPVGV 83
Query: 469 F-KMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILV 527
F + L LDL +N+L T LP+ VF L L+EL++ N E+P ++L L
Sbjct: 84 FDSLTQLTVLDLGTNQL-TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLA 141
Query: 528 VQFNNFSGAIP 538
+ N +IP
Sbjct: 142 LDQNQLK-SIP 151
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 71/154 (46%), Gaps = 8/154 (5%)
Query: 166 LVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLP 225
+V ++ S A P + S +D + +K ++P AG Q L L DNQ++ P
Sbjct: 2 MVHHHHHHSAACPSQCS--CSGTTVDCR-SKRHASVP-AGIPTNAQILYLHDNQITKLEP 57
Query: 226 SFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDT-ANCSYLR 284
+ L+ L L SN+L A LP VF +L L L L N +PS +L+
Sbjct: 58 GVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLK 115
Query: 285 ILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQ 318
L + N + +P+ I LT L L L N+L+
Sbjct: 116 ELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK 148
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 70/162 (43%), Gaps = 32/162 (19%)
Query: 355 QFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFP 414
Q L L N+++ +L VF +L L+ELYL +N
Sbjct: 43 QILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQL------------------------- 76
Query: 415 GAIPKEI-SNLTKLEKLDLQYNRLQGTIPYA--GHLFQLQWLDLSDNQLSGSLPSFKFKM 471
GA+P + +LT+L LDL N+L +P A L L+ L + N+L+ LP ++
Sbjct: 77 GALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERL 134
Query: 472 PLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEI 513
L L L N+L + +P F L L YL N + E
Sbjct: 135 THLTHLALDQNQLKS-IPHGAFDRLSSLTHAYLFGNPWDCEC 175
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 62/139 (44%), Gaps = 7/139 (5%)
Query: 138 NWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEI-SNLTKLEKLDLQYNK 196
N Q LYL N P + L+ L L N GA+P + +LT+L LDL N+
Sbjct: 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQ 99
Query: 197 LQGTIPYA--GHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFH 254
L +P A L L+ L + N+L+ LP ++ L L L N+L + +P F
Sbjct: 100 LT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS-IPHGAFD 156
Query: 255 NLPFLEELYLSNNMFYGEI 273
L L YL N + E
Sbjct: 157 RLSSLTHAYLFGNPWDCEC 175
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 72/157 (45%), Gaps = 7/157 (4%)
Query: 330 LQWLDLSDN-QLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNM 388
L+ LDLSDN QL P+ + L L L L EL +F L L+ LYL +N
Sbjct: 81 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNA 139
Query: 389 FYGEIPSDT-QNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA-GH 446
+P DT ++ L L L N + L L++L L NR+ P+A
Sbjct: 140 LQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 198
Query: 447 LFQLQWLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSN 482
L +L L L N LS +LP+ + LQ+L L+ N
Sbjct: 199 LGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 234
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 86/207 (41%), Gaps = 7/207 (3%)
Query: 231 MPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRF 290
+ LL+ LDLS N + FH L L L+L P + L+ L L+
Sbjct: 78 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 137
Query: 291 NNFSGAIPKEISNLTKLEKLDLQYNRLQGT--ILYVGHLLQLQWLDLSDNQLSGSLPSFK 348
N +L L L L NR+ + G L L L L N+++ P
Sbjct: 138 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG-LHSLDRLLLHQNRVAHVHPHAF 196
Query: 349 FNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVL 408
++ L L L +N LS LPT L L+ L L++N + + + ++L+
Sbjct: 197 RDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWVCDCRARPL-WAWLQKFRG 254
Query: 409 KFNNFPGAIPKEIS--NLTKLEKLDLQ 433
+ P ++P+ ++ +L +L DLQ
Sbjct: 255 SSSEVPCSLPQRLAGRDLKRLAANDLQ 281
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 72/157 (45%), Gaps = 7/157 (4%)
Query: 330 LQWLDLSDN-QLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNM 388
L+ LDLSDN QL P+ + L L L L EL +F L L+ LYL +N
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNA 140
Query: 389 FYGEIPSDT-QNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA-GH 446
+P DT ++ L L L N + L L++L L NR+ P+A
Sbjct: 141 LQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199
Query: 447 LFQLQWLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSN 482
L +L L L N LS +LP+ + LQ+L L+ N
Sbjct: 200 LGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 86/207 (41%), Gaps = 7/207 (3%)
Query: 231 MPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRF 290
+ LL+ LDLS N + FH L L L+L P + L+ L L+
Sbjct: 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138
Query: 291 NNFSGAIPKEISNLTKLEKLDLQYNRLQGT--ILYVGHLLQLQWLDLSDNQLSGSLPSFK 348
N +L L L L NR+ + G L L L L N+++ P
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG-LHSLDRLLLHQNRVAHVHPHAF 197
Query: 349 FNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVL 408
++ L L L +N LS LPT L L+ L L++N + + + ++L+
Sbjct: 198 RDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWVCDCRARPL-WAWLQKFRG 255
Query: 409 KFNNFPGAIPKEIS--NLTKLEKLDLQ 433
+ P ++P+ ++ +L +L DLQ
Sbjct: 256 SSSEVPCSLPQRLAGRDLKRLAANDLQ 282
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 60/141 (42%), Gaps = 13/141 (9%)
Query: 380 EELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYN-RLQ 438
+ ++L N + Q+C L IL L N G + LT LE+LDL N +L+
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 439 GTIPYA----GHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFH 494
P GHL L LD Q G P + LQ+L L N L LP N F
Sbjct: 94 VVDPTTFRGLGHLHTLH-LDRCGLQELG--PGLFRGLAALQYLYLQDNNLQA-LPDNTFR 149
Query: 495 NLPFLEELYLSNNMFYGEIPS 515
+L L L+L N IPS
Sbjct: 150 DLGNLTHLFLHGN----RIPS 166
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 69/174 (39%), Gaps = 2/174 (1%)
Query: 215 LSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIP 274
L N L+G + + LL+ LDLS N + F L L L+L P
Sbjct: 62 LHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGP 121
Query: 275 SDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQ-LQWL 333
+ L+ L L+ NN +L L L L NR+ + L L L
Sbjct: 122 GLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRL 181
Query: 334 DLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNN 387
L N ++ P ++ L L L +N LS+ LP V L L+ L L++N
Sbjct: 182 LLHQNHVARVHPHAFRDLGRLMTLYLFANNLSM-LPAEVLVPLRSLQYLRLNDN 234
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 91/299 (30%), Positives = 133/299 (44%), Gaps = 49/299 (16%)
Query: 109 KIPSTLSSCKRLRETSLSLND----------FFWDHTKRNWQQLYLSKNMFYGEIPSDIA 158
K+P+ L R E L+LND F + HT Q+LY+ N P
Sbjct: 59 KLPAALLDSFRQVEL-LNLNDLQIEEIDTYAFAYAHT---IQKLYMGFNAIRYLPPHVFQ 114
Query: 159 NCSYLRILVLQFNNFSGAIPKEI-SNLTKLEKLDLQYNKLQGTIPYAGHLYQ----LQWL 213
N L +LVL+ N+ S ++P+ I N KL L + N L+ +Q LQ L
Sbjct: 115 NVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERI---EDDTFQATTSLQNL 170
Query: 214 DLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSA-ELPTNVFHNLPFLEELYLSNNMFYGE 272
LS N+L+ S +P L ++S N LS +P V EEL S+N
Sbjct: 171 QLSSNRLTHVDLSL---IPSLFHANVSYNLLSTLAIPIAV-------EELDASHNSI--N 218
Query: 273 IPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILY-VGHLLQLQ 331
+ N L IL L+ NN + + N L ++DL YN L+ + + + +L+
Sbjct: 219 VVRGPVNVE-LTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 275
Query: 332 WLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLP---FLEELYLSNN 387
L +S+N+L L + +P L+ LDLS N L +V N P LE LYL +N
Sbjct: 276 RLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL-----LHVERNQPQFDRLENLYLDHN 328
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 123/274 (44%), Gaps = 41/274 (14%)
Query: 247 ELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEI-SNLT 305
E+ T F +++LY+ N P N L +LVL N+ S ++P+ I N
Sbjct: 83 EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTP 141
Query: 306 KLEKLDLQYN---RLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSN 362
KL L + N R++ LQ L LS N+L+ S +P L ++S N
Sbjct: 142 KLTTLSMSNNNLERIEDDTFQAT--TSLQNLQLSSNRLTHVDLSL---IPSLFHANVSYN 196
Query: 363 RLS-VELPTNVFHNLPFLEELYLSN---NMFYGEIPSDTQNCSYLRILVLKFNNFPGAIP 418
LS + +P V EEL S+ N+ G + + L IL L+ NN
Sbjct: 197 LLSTLAIPIAV-------EELDASHNSINVVRGPVNVE------LTILKLQHNNLTDT-- 241
Query: 419 KEISNLTKLEKLDLQYNRLQGTI--PYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQF 476
+ N L ++DL YN L+ + P+ + +L+ L +S+N+L L + +P L+
Sbjct: 242 AWLLNYPGLVEVDLSYNELEKIMYHPFVK-MQRLERLYISNNRLVA-LNLYGQPIPTLKV 299
Query: 477 LDLSSNRLSTELPTNVFHNLP---FLEELYLSNN 507
LDLS N L +V N P LE LYL +N
Sbjct: 300 LDLSHNHL-----LHVERNQPQFDRLENLYLDHN 328
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 13/123 (10%)
Query: 234 LQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDT----ANCSYLRILVLR 289
L +L L+ N+L + LP VF L L+EL L N +P N +YL +
Sbjct: 87 LTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLYL---- 140
Query: 290 FNNFSGAIPKEI-SNLTKLEKLDLQYNRLQGTILYV-GHLLQLQWLDLSDNQLSGSLPSF 347
++N ++PK + LT L +LDL N+LQ V L QL+ L L+DNQL S+P
Sbjct: 141 YHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK-SVPDG 199
Query: 348 KFN 350
F+
Sbjct: 200 VFD 202
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 13/122 (10%)
Query: 354 LQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDT----QNCSYLRILVLK 409
L +L L+ N+L LP VF L L+EL L N +P N +YL + +
Sbjct: 87 LTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLYLYHNQ 144
Query: 410 FNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA--GHLFQLQWLDLSDNQLSGSLPSF 467
+ P + +++NLT+L DL N+LQ ++P L QL+ L L+DNQL S+P
Sbjct: 145 LQSLPKGVFDKLTNLTRL---DLDNNQLQ-SLPEGVFDKLTQLKQLSLNDNQLK-SVPDG 199
Query: 468 KF 469
F
Sbjct: 200 VF 201
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 9/76 (11%)
Query: 157 IANCSYLRILVLQFNNFSGAIPKEI-SNLTKLEKLDLQYNKLQGTIPYA--GHLYQLQWL 213
+ N +YL + ++N ++PK + LT L +LDL N+LQ ++P L QL+ L
Sbjct: 132 LTNLTYLYL----YHNQLQSLPKGVFDKLTNLTRLDLDNNQLQ-SLPEGVFDKLTQLKQL 186
Query: 214 DLSDNQLSGSLPSFKF 229
L+DNQL S+P F
Sbjct: 187 SLNDNQLK-SVPDGVF 201
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 53/103 (51%), Gaps = 12/103 (11%)
Query: 410 FNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA--GHLFQLQWLDLSDNQLSGSLPSF 467
+ P IP S+ T+LE L+ N+LQ ++P+ L QL L LS NQ+ SLP
Sbjct: 19 LTSVPTGIP---SSATRLE---LESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQ-SLPDG 70
Query: 468 KF-KMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMF 509
F K+ L L L N+L + LP VF L L+EL L N
Sbjct: 71 VFDKLTKLTILYLHENKLQS-LPNGVFDKLTQLKELALDTNQL 112
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 189 KLDLQYNKLQGTIPYA--GHLYQLQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLS 245
+L+L+ NKLQ ++P+ L QL L LS NQ+ SLP F K+ L L L N+L
Sbjct: 32 RLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ 89
Query: 246 AELPTNVFHNLPFLEELYLSNNMF 269
+ LP VF L L+EL L N
Sbjct: 90 S-LPNGVFDKLTQLKELALDTNQL 112
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 79/185 (42%), Gaps = 38/185 (20%)
Query: 236 FLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSG 295
+LDL +N L + LP VF L L +LYL N
Sbjct: 32 YLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQ------------------------- 65
Query: 296 AIPKEISN-LTKLEKLDLQYNRLQGTILYV-GHLLQLQWLDLSDNQLSGSLPSFKFN-MP 352
++P + N LT L L+L N+LQ V L QL+ L L+ NQL SLP F+ +
Sbjct: 66 SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLT 124
Query: 353 LLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNN 412
L+ L L N+L +P VF L L+ ++L +N P D C +R L N
Sbjct: 125 QLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN------PWDC-TCPGIRYLSEWINK 176
Query: 413 FPGAI 417
G +
Sbjct: 177 HSGVV 181
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 17/141 (12%)
Query: 393 IPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA--GHLFQL 450
IP+ T +YL + + P + E+++LT+L L N+LQ ++P L L
Sbjct: 26 IPAQT---TYLDLETNSLKSLPNGVFDELTSLTQLY---LGGNKLQ-SLPNGVFNKLTSL 78
Query: 451 QWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMF 509
+L+LS NQL SLP+ F K+ L+ L L++N+L + LP VF L L++L L N
Sbjct: 79 TYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQL 136
Query: 510 YGEIPSDTPNCSYLRILVVQF 530
P+ + R+ +Q+
Sbjct: 137 -----KSVPDGVFDRLTSLQY 152
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 65/121 (53%), Gaps = 10/121 (8%)
Query: 153 IPSDI-ANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA--GHLYQ 209
+P+ I A +YL + + + E+++LT+L L NKLQ ++P L
Sbjct: 22 VPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLY---LGGNKLQ-SLPNGVFNKLTS 77
Query: 210 LQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNM 268
L +L+LS NQL SLP+ F K+ L+ L L++N+L + LP VF L L++L L N
Sbjct: 78 LTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQ 135
Query: 269 F 269
Sbjct: 136 L 136
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 69/154 (44%), Gaps = 8/154 (5%)
Query: 320 TILYVGHLLQLQWLDLSDNQLSGSLPSFKFN-MPLLQFLDLSSNRLSVELPTNVFHNLPF 378
T + G Q +LDL N L SLP+ F+ + L L L N+L LP VF+ L
Sbjct: 20 TSVPTGIPAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTS 77
Query: 379 LEELYLSNNMFYGEIPSDT-QNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRL 437
L L LS N +P+ + L+ L L N LT+L+ L L N+L
Sbjct: 78 LTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Query: 438 QGTIPYA--GHLFQLQWLDLSDNQLSGSLPSFKF 469
+ ++P L LQ++ L DN + P ++
Sbjct: 137 K-SVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY 169
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 297 IPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQF 356
+P EI NL+ L LDL +NRL +G QL++ DN ++ +LP N+ LQF
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQF 320
Query: 357 LDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFY 390
L + N L + L L E ++ +FY
Sbjct: 321 LGVEGNPLEKQF-------LKILTEKSVTGLIFY 347
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 139 WQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQ 198
W L LS N+ I ++I +L L L N+ + +P EI NL+ L LDL +N+L
Sbjct: 226 WHALDLS-NLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283
Query: 199 GTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPF 258
G +QL++ DN ++ +LP + LQFL + N L + L
Sbjct: 284 SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQF-------LKI 335
Query: 259 LEELYLSNNMFY 270
L E ++ +FY
Sbjct: 336 LTEKSVTGLIFY 347
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 417 IPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQF 476
+P EI NL+ L LDL +NRL G FQL++ DN ++ +LP + LQF
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQF 320
Query: 477 LDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFY 510
L + N L + L L E ++ +FY
Sbjct: 321 LGVEGNPLEKQF-------LKILTEKSVTGLIFY 347
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALF 82
+T L ++G +LT +P+E+ NLS+L+ LDLS N + S+PA + + L F +N +
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDN-MV 305
Query: 83 GELPPNFCNHLSNLESLFLKSN 104
LP F N L NL+ L ++ N
Sbjct: 306 TTLPWEFGN-LCNLQFLGVEGN 326
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 116/307 (37%), Gaps = 68/307 (22%)
Query: 233 LLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNN 292
++Q DL ++ +LP P L L NN D N L L+L N
Sbjct: 35 VVQCSDLGLEKVPKDLP-------PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87
Query: 293 FSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMP 352
S P + L KLE+L L N+L+ L LQ L + +N+++ K
Sbjct: 88 ISKISPGAFAPLVKLERLYLSKNQLKE--LPEKMPKTLQELRVHENEIT------KVRKS 139
Query: 353 LLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNN 412
+ L+ + VEL TN L+ + N F G + SY+RI
Sbjct: 140 VFNGLN---QMIVVELGTNP------LKSSGIENGAFQG-----MKKLSYIRIADTNITT 185
Query: 413 FPGAIPKEISNL----TKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFK 468
P +P ++ L K+ K+D L+G L L L LS N +S
Sbjct: 186 IPQGLPPSLTELHLDGNKITKVDAA--SLKG-------LNNLAKLGLSFNSISA------ 230
Query: 469 FKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVV 528
+D S N P L EL+L+NN ++P + Y++++ +
Sbjct: 231 --------VDNGS-----------LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL 270
Query: 529 QFNNFSG 535
NN S
Sbjct: 271 HNNNISA 277
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 97/237 (40%), Gaps = 37/237 (15%)
Query: 155 SDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLD 214
D N L L+L N S P + L KLE+L L N+L+ +P LQ L
Sbjct: 70 GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEK-MPKTLQELR 127
Query: 215 LSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIP 274
+ +N+++ S + + ++L +N L + + N F G
Sbjct: 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSS---------------GIENGAFQG--- 169
Query: 275 SDTANCSYLRILVLRFNNFSGAIPKEISNL----TKLEKLDLQYNRLQGTILYVGHLLQL 330
SY+RI +P ++ L K+ K+D L+G L L
Sbjct: 170 --MKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAA--SLKG-------LNNL 218
Query: 331 QWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNN 387
L LS N +S N P L+ L L++N+L V++P + + +++ +YL NN
Sbjct: 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADH-KYIQVVYLHNN 273
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 23/156 (14%)
Query: 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALF 82
+T L++ G +T + L L++L L LSFN S S+ N L ++ NN L
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
Query: 83 GELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFF---WDHTKRNW 139
++P +H ++ ++L +N +++ NDF ++ K ++
Sbjct: 254 -KVPGGLADH-KYIQVVYLHNNNI----------------SAIGSNDFCPPGYNTKKASY 295
Query: 140 QQLYLSKN-MFYGEIPSDIANCSYLRILVLQFNNFS 174
+ L N + Y EI C Y+R V Q N+
Sbjct: 296 SGVSLFSNPVQYWEIQPSTFRCVYVRAAV-QLGNYK 330
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 118/464 (25%), Positives = 186/464 (40%), Gaps = 87/464 (18%)
Query: 138 NWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKE--ISNLTKLEKLDLQYN 195
N + L L + Y P +L L L F S A+ K+ NL L +LDL N
Sbjct: 74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133
Query: 196 KLQGTI--PYAGHLYQLQWLDLSDNQL----SGSLPSFKFKMPLLQFLDLSSNRLSAELP 249
+++ P G L L+ +D S NQ+ L + K L F L++N L + +
Sbjct: 134 QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT--LSFFSLAANSLYSRVS 191
Query: 250 T------NVFHNLPFLEELYLSNNMFYGEIPSDTANC-----SYLRILVLRF-------- 290
N F N+ LE L +S N + +I + +N ++ IL
Sbjct: 192 VDWGKCMNPFRNM-VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250
Query: 291 -------NNFSGAIPKEISNL------------------TKLEKLDLQYNRLQGTI--LY 323
N F+G + +L L+ L+L YN++ +
Sbjct: 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF 310
Query: 324 VGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELY 383
G L LQ L+LS N L S + +P + ++DL N +++ + F L L+ L
Sbjct: 311 YG-LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI-IQDQTFKFLEKLQTLD 368
Query: 384 LSNNM-----FYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQ 438
L +N F IP + + +++ L N + N +LE LD+ Y L+
Sbjct: 369 LRDNALTTIHFIPSIPDIFLSGN--KLVTLPKINLTANLIHLSEN--RLENLDILYFLLR 424
Query: 439 GTIPYAGHLFQLQWLDLSDNQLSGS----LPSFKFKMPLLQFLDLSSNRL----STELPT 490
+P+ LQ L L+ N+ S PS + P L+ L L N L TEL
Sbjct: 425 --VPH------LQILILNQNRFSSCSGDQTPS---ENPSLEQLFLGENMLQLAWETELCW 473
Query: 491 NVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFS 534
+VF L L+ LYL++N P + + LR L + N +
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 85/199 (42%), Gaps = 49/199 (24%)
Query: 186 KLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGS----LPSFKFKMPLLQFLDLSS 241
+LE LD+ Y L+ +P+ LQ L L+ N+ S PS + P L+ L L
Sbjct: 412 RLENLDILYFLLR--VPH------LQILILNQNRFSSCSGDQTPS---ENPSLEQLFLGE 460
Query: 242 NRL----SAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAI 297
N L EL +VF L L+ LYL++N + +P
Sbjct: 461 NMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLP----------------------- 496
Query: 298 PKEISNLTKLEKLDLQYNRLQGTILYVGHL-LQLQWLDLSDNQLSGSLPSFKFNMPLLQF 356
P S+LT L L L NRL T+L L L+ LD+S NQL P ++ +
Sbjct: 497 PGVFSHLTALRGLSLNSNRL--TVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSV--- 551
Query: 357 LDLSSNRLSVELPTNVFHN 375
LD++ N+ E + F N
Sbjct: 552 LDITHNKFICECELSTFIN 570
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 116/307 (37%), Gaps = 68/307 (22%)
Query: 233 LLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNN 292
++Q DL ++ +LP P L L NN D N L L+L N
Sbjct: 35 VVQCSDLGLEKVPKDLP-------PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87
Query: 293 FSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMP 352
S P + L KLE+L L N+L+ L LQ L + +N+++ K
Sbjct: 88 ISKISPGAFAPLVKLERLYLSKNQLKE--LPEKMPKTLQELRVHENEIT------KVRKS 139
Query: 353 LLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNN 412
+ L+ + VEL TN L+ + N F G + SY+RI
Sbjct: 140 VFNGLN---QMIVVELGTNP------LKSSGIENGAFQG-----MKKLSYIRIADTNITT 185
Query: 413 FPGAIPKEISNL----TKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFK 468
P +P ++ L K+ K+D L+G L L L LS N +S
Sbjct: 186 IPQGLPPSLTELHLDGNKITKVDAA--SLKG-------LNNLAKLGLSFNSISA------ 230
Query: 469 FKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVV 528
+D S N P L EL+L+NN ++P + Y++++ +
Sbjct: 231 --------VDNGS-----------LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL 270
Query: 529 QFNNFSG 535
NN S
Sbjct: 271 HNNNISA 277
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 97/237 (40%), Gaps = 37/237 (15%)
Query: 155 SDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLD 214
D N L L+L N S P + L KLE+L L N+L+ +P LQ L
Sbjct: 70 GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEK-MPKTLQELR 127
Query: 215 LSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIP 274
+ +N+++ S + + ++L +N L + + N F G
Sbjct: 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSS---------------GIENGAFQG--- 169
Query: 275 SDTANCSYLRILVLRFNNFSGAIPKEISNL----TKLEKLDLQYNRLQGTILYVGHLLQL 330
SY+RI +P ++ L K+ K+D L+G L L
Sbjct: 170 --MKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAA--SLKG-------LNNL 218
Query: 331 QWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNN 387
L LS N +S N P L+ L L++N+L V++P + + +++ +YL NN
Sbjct: 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADH-KYIQVVYLHNN 273
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 23/155 (14%)
Query: 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALF 82
+T L++ G +T + L L++L L LSFN S S+ N L ++ NN L
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
Query: 83 GELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFF---WDHTKRNW 139
++P +H ++ ++L +N +++ NDF ++ K ++
Sbjct: 254 -KVPGGLADH-KYIQVVYLHNNNI----------------SAIGSNDFCPPGYNTKKASY 295
Query: 140 QQLYLSKN-MFYGEIPSDIANCSYLRILVLQFNNF 173
+ L N + Y EI C Y+R V Q N+
Sbjct: 296 SGVSLFSNPVQYWEIQPSTFRCVYVRAAV-QLGNY 329
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 14/120 (11%)
Query: 400 CSYLRILV----LKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA-GHLFQLQWLD 454
CS + LV ++ + P IP T ++L L N++ P HL LQ L
Sbjct: 10 CSCDQTLVNCQNIRLASVPAGIP------TDKQRLWLNNNQITKLEPGVFDHLVNLQQLY 63
Query: 455 LSDNQLSGSLPSFKF-KMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEI 513
+ N+L+ ++P+ F K+ L LDL+ N L + +P F NL L +YL NN + E
Sbjct: 64 FNSNKLT-AIPTGVFDKLTQLTQLDLNDNHLKS-IPRGAFDNLKSLTHIYLYNNPWDCEC 121
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 158 ANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA-GHLYQLQWLDLS 216
+ CS + LV N ++P I T ++L L N++ P HL LQ L +
Sbjct: 8 SQCSCDQTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFN 65
Query: 217 DNQLSGSLPSFKF-KMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEI 273
N+L+ ++P+ F K+ L LDL+ N L + +P F NL L +YL NN + E
Sbjct: 66 SNKLT-AIPTGVFDKLTQLTQLDLNDNHLKS-IPRGAFDNLKSLTHIYLYNNPWDCEC 121
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Query: 278 ANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVG---HLLQLQWLD 334
+ CS + LV N ++P I +K L N Q T L G HL+ LQ L
Sbjct: 8 SQCSCDQTLVNCQNIRLASVPAGIPT----DKQRLWLNNNQITKLEPGVFDHLVNLQQLY 63
Query: 335 LSDNQLSGSLPSFKFN-MPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEI 393
+ N+L+ ++P+ F+ + L LDL+ N L +P F NL L +YL NN + E
Sbjct: 64 FNSNKLT-AIPTGVFDKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNNPWDCEC 121
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 44 LSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKS 103
S QTL N S+PA I L ++NN +L P +HL NL+ L+ S
Sbjct: 10 CSCDQTLVNCQNIRLASVPAGIPTDKQRL---WLNNNQITKLEPGVFDHLVNLQQLYFNS 66
Query: 104 NMFHGKIPSTLSSCKRLRETSLSLND 129
N IP+ + K + T L LND
Sbjct: 67 NKLTA-IPTGVFD-KLTQLTQLDLND 90
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 91/299 (30%), Positives = 134/299 (44%), Gaps = 49/299 (16%)
Query: 109 KIPSTLSSCKRLRETSLSLND----------FFWDHTKRNWQQLYLSKNMFYGEIPSDIA 158
K+P+ L R E L+LND F + HT Q+LY+ N P
Sbjct: 65 KLPAALLDSFRQVEL-LNLNDLQIEEIDTYAFAYAHT---IQKLYMGFNAIRYLPPHVFQ 120
Query: 159 NCSYLRILVLQFNNFSGAIPKEI-SNLTKLEKLDLQYNKLQGTIPYAGHLYQ----LQWL 213
N L +LVL+ N+ S ++P+ I N KL L + N L+ +Q LQ L
Sbjct: 121 NVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERI---EDDTFQATTSLQNL 176
Query: 214 DLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSA-ELPTNVFHNLPFLEELYLSNNMFYGE 272
LS N+L+ S +P L ++S N LS +P V EEL S+N
Sbjct: 177 QLSSNRLTHVDLSL---IPSLFHANVSYNLLSTLAIPIAV-------EELDASHNSI--N 224
Query: 273 IPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILY-VGHLLQLQ 331
+ N L IL L+ NN + + N L ++DL YN L+ + + + +L+
Sbjct: 225 VVRGPVNVE-LTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 281
Query: 332 WLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLP---FLEELYLSNN 387
L +S+N+L +L + +P L+ LDLS N L +V N P LE LYL +N
Sbjct: 282 RLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL-----LHVERNQPQFDRLENLYLDHN 334
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 124/274 (45%), Gaps = 41/274 (14%)
Query: 247 ELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEI-SNLT 305
E+ T F +++LY+ N P N L +LVL N+ S ++P+ I N
Sbjct: 89 EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTP 147
Query: 306 KLEKLDLQYN---RLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSN 362
KL L + N R++ LQ L LS N+L+ S +P L ++S N
Sbjct: 148 KLTTLSMSNNNLERIEDDTFQAT--TSLQNLQLSSNRLTHVDLSL---IPSLFHANVSYN 202
Query: 363 RLS-VELPTNVFHNLPFLEELYLSN---NMFYGEIPSDTQNCSYLRILVLKFNNFPGAIP 418
LS + +P V EEL S+ N+ G + + L IL L+ NN
Sbjct: 203 LLSTLAIPIAV-------EELDASHNSINVVRGPVNVE------LTILKLQHNNLTDTA- 248
Query: 419 KEISNLTKLEKLDLQYNRLQGTI--PYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQF 476
+ N L ++DL YN L+ + P+ + +L+ L +S+N+L +L + +P L+
Sbjct: 249 -WLLNYPGLVEVDLSYNELEKIMYHPFVK-MQRLERLYISNNRLV-ALNLYGQPIPTLKV 305
Query: 477 LDLSSNRLSTELPTNVFHNLP---FLEELYLSNN 507
LDLS N L +V N P LE LYL +N
Sbjct: 306 LDLSHNHL-----LHVERNQPQFDRLENLYLDHN 334
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 109/247 (44%), Gaps = 31/247 (12%)
Query: 273 IPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRL-QGTILYVGHLLQLQ 331
IPS+T R L L NN +L LE L L N + Q + L L
Sbjct: 73 IPSNT------RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLN 126
Query: 332 WLDLSDNQLSGSLPSFKFN-MPLLQFLDLSSNRLSVELPTNVFHNLPFLEEL-------- 382
L+L DN L+ +PS F + L+ L L +N + +P+ F+ +P L L
Sbjct: 127 TLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKL 184
Query: 383 -YLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTI 441
Y+S F G N YL + + + P P L LE+L++ N
Sbjct: 185 EYISEGAFEGLF-----NLKYLNLGMCNIKDMPNLTP-----LVGLEELEMSGNHFPEIR 234
Query: 442 PYAGH-LFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLE 500
P + H L L+ L + ++Q+S + + L L+L+ N LS+ LP ++F L +L
Sbjct: 235 PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS-LPHDLFTPLRYLV 293
Query: 501 ELYLSNN 507
EL+L +N
Sbjct: 294 ELHLHHN 300
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 65/154 (42%), Gaps = 30/154 (19%)
Query: 241 SNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKE 300
SN+ LP + ++ ELYL N F +P + +N +L ++ L N S +
Sbjct: 18 SNKGLKVLPKGIPRDV---TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQS 73
Query: 301 ISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFN-MPLLQFLDL 359
SN+T+L L L YNRL+ +P F+ + L+ L L
Sbjct: 74 FSNMTQLLTLILSYNRLR------------------------CIPPRTFDGLKSLRLLSL 109
Query: 360 SSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEI 393
N +SV +P F++L L L + N Y +
Sbjct: 110 HGNDISV-VPEGAFNDLSALSHLAIGANPLYCDC 142
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 137 RNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNK 196
R+ +LYL N F +P +++N +L ++ L N S + SN+T+L L L YN+
Sbjct: 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89
Query: 197 LQGTIPYA-GHLYQLQWLDLSDNQLS 221
L+ P L L+ L L N +S
Sbjct: 90 LRCIPPRTFDGLKSLRLLSLHGNDIS 115
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 379 LEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQ 438
+ ELYL N F +P + N +L ++ L N + SN+T+L L L YNRL+
Sbjct: 33 VTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 439 GTIPYA-GHLFQLQWLDLSDNQLS 461
P L L+ L L N +S
Sbjct: 92 CIPPRTFDGLKSLRLLSLHGNDIS 115
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALF 82
VT L + G T+ +P EL N L +DLS N S S NM+ LL++ N L
Sbjct: 33 VTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 83 GELPPNFCNHLSNLESLFLKSN 104
+PP + L +L L L N
Sbjct: 92 C-IPPRTFDGLKSLRLLSLHGN 112
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 94/212 (44%), Gaps = 15/212 (7%)
Query: 304 LTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLS--GSLPSFKFNMPLLQFLDLSS 361
L L++L N+ G L L++LDLS N LS G F L++LDLS
Sbjct: 324 LKSLKRLTFTSNK-GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382
Query: 362 NRLSVELPTNVFHNLPFLEELYLSNN----MFYGEIPSDTQNCSYLRILVLKFNNFPGAI 417
N + + + +N F L LE L ++ M + +N YL I + A
Sbjct: 383 NGV-ITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI---SHTHTRVAF 437
Query: 418 PKEISNLTKLEKLDLQYNRLQGTI--PYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQ 475
+ L+ LE L + N Q L L +LDLS QL P+ + LQ
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497
Query: 476 FLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507
L+++SN+L + +P +F L L++++L N
Sbjct: 498 VLNMASNQLKS-VPDGIFDRLTSLQKIWLHTN 528
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 93/212 (43%), Gaps = 15/212 (7%)
Query: 184 LTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLS--GSLPSFKFKMPLLQFLDLSS 241
L L++L NK G L L++LDLS N LS G F L++LDLS
Sbjct: 324 LKSLKRLTFTSNK-GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382
Query: 242 NRLSAELPTNVFHNLPFLEELYLSNN----MFYGEIPSDTANCSYLRILVLRFNNFSGAI 297
N + + +N F L LE L ++ M + N YL I + A
Sbjct: 383 NGV-ITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI---SHTHTRVAF 437
Query: 298 PKEISNLTKLEKLDLQYNRLQGTIL--YVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQ 355
+ L+ LE L + N Q L L L +LDLS QL P+ ++ LQ
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497
Query: 356 FLDLSSNRLSVELPTNVFHNLPFLEELYLSNN 387
L+++SN+L +P +F L L++++L N
Sbjct: 498 VLNMASNQLK-SVPDGIFDRLTSLQKIWLHTN 528
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 67/145 (46%), Gaps = 5/145 (3%)
Query: 357 LDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGA 416
LDLS N L L + F + P L+ L LS Q+ S+L L+L N
Sbjct: 33 LDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91
Query: 417 IPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQL-SGSLPSFKFKMPLL 474
S L+ L+KL L + GHL L+ L+++ N + S LP + + L
Sbjct: 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151
Query: 475 QFLDLSSNRLSTELPTN--VFHNLP 497
+ LDLSSN++ + T+ V H +P
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMP 176
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 62/156 (39%), Gaps = 35/156 (22%)
Query: 190 LDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLS--GSLPSFKFKMPLLQFLDLSSNRLSAE 247
++L + K+ +P++ + LDLS N L GS F F P LQ LDLS +
Sbjct: 15 MELNFYKIPDNLPFST-----KNLDLSFNPLRHLGSYSFFSF--PELQVLDLSRCEIQT- 66
Query: 248 LPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSG------------ 295
+ + +L L L L+ N + S L+ LV N +
Sbjct: 67 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126
Query: 296 -------------AIPKEISNLTKLEKLDLQYNRLQ 318
+P+ SNLT LE LDL N++Q
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 51/133 (38%), Gaps = 30/133 (22%)
Query: 333 LDLSDNQLS--GSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFY 390
LDLS N L GS F F P LQ LDLS + + + +L L L L+ N
Sbjct: 33 LDLSFNPLRHLGSYSFFSF--PELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQ 89
Query: 391 GEIPSDTQNCSYLRILVL------KFNNFPGA-------------------IPKEISNLT 425
S L+ LV NFP +P+ SNLT
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 426 KLEKLDLQYNRLQ 438
LE LDL N++Q
Sbjct: 150 NLEHLDLSSNKIQ 162
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 72/195 (36%), Gaps = 31/195 (15%)
Query: 262 LYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTI 321
L+LS N+ Y S Y R+ L + + L L LDL +N+LQ
Sbjct: 37 LHLSENLLYTF--SLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ--- 91
Query: 322 LYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEE 381
SLP +P L LD+S NRL+ LP L L+E
Sbjct: 92 ---------------------SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQE 129
Query: 382 LYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTI 441
LYL N P L L L NN ++ L L+ L LQ N L TI
Sbjct: 130 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI 188
Query: 442 P---YAGHLFQLQWL 453
P + HL +L
Sbjct: 189 PKGFFGSHLLPFAFL 203
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 416 AIPKEISNLTKLEKLDLQYNRLQGTIPYAG--HLFQLQWLDLSDNQLSGSLPSFKFKMPL 473
++P L L LD+ +NRL ++P L +LQ L L N+L P P
Sbjct: 92 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 150
Query: 474 LQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFY 510
L+ L L++N L TELP + + L L+ L L N Y
Sbjct: 151 LEKLSLANNNL-TELPAGLLNGLENLDTLLLQENSLY 186
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 12/138 (8%)
Query: 135 TKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQY 194
T+ N + L+K G +P L L L N ++P L L LD+ +
Sbjct: 59 TQLNLDRCELTKLQVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF 110
Query: 195 NKLQGTIPYAG--HLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNV 252
N+L ++P L +LQ L L N+L P P L+ L L++N L+ ELP +
Sbjct: 111 NRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGL 168
Query: 253 FHNLPFLEELYLSNNMFY 270
+ L L+ L L N Y
Sbjct: 169 LNGLENLDTLLLQENSLY 186
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 422 SNLTKLEKLDLQYNRLQGTIPYAGH-LFQLQWLDLSDNQLSGSLPSFKFK-MPLLQFLDL 479
L L LDL +N+LQ ++P G L L LD+S N+L+ SLP + + LQ L L
Sbjct: 75 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 132
Query: 480 SSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPS 515
N L T LP + P LE+L L+NN E+P+
Sbjct: 133 KGNELKT-LPPGLLTPTPKLEKLSLANNNLT-ELPA 166
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Query: 22 RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNAL 81
R+T LN+ LT G L L TLDLS N S+P + +L ++ N L
Sbjct: 57 RLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 113
Query: 82 FGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDF 130
LP L L+ L+LK N P L+ +L + SL+ N+
Sbjct: 114 T-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 161
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALF 82
+T L++S LT L L LQ L L N P + L ++ NN L
Sbjct: 103 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 162
Query: 83 GELPPNFCNHLSNLESLFLKSNMFH 107
ELP N L NL++L L+ N +
Sbjct: 163 -ELPAGLLNGLENLDTLLLQENSLY 186
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 72/195 (36%), Gaps = 31/195 (15%)
Query: 262 LYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTI 321
L+LS N+ Y S Y R+ L + + L L LDL +N+LQ
Sbjct: 36 LHLSENLLY--TFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ--- 90
Query: 322 LYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEE 381
SLP +P L LD+S NRL+ LP L L+E
Sbjct: 91 ---------------------SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQE 128
Query: 382 LYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTI 441
LYL N P L L L NN ++ L L+ L LQ N L TI
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI 187
Query: 442 P---YAGHLFQLQWL 453
P + HL +L
Sbjct: 188 PKGFFGSHLLPFAFL 202
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 424 LTKLEKLDLQYNRLQGTIPYAG--HLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSS 481
L L LD+ +NRL ++P L +LQ L L N+L P P L+ L L++
Sbjct: 99 LPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157
Query: 482 NRLSTELPTNVFHNLPFLEELYLSNNMFY 510
N L TELP + + L L+ L L N Y
Sbjct: 158 NNL-TELPAGLLNGLENLDTLLLQENSLY 185
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 12/138 (8%)
Query: 135 TKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQY 194
T+ N + L+K G +P L L L N ++P L L LD+ +
Sbjct: 58 TQLNLDRAELTKLQVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF 109
Query: 195 NKLQGTIPYAG--HLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNV 252
N+L ++P L +LQ L L N+L P P L+ L L++N L+ ELP +
Sbjct: 110 NRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGL 167
Query: 253 FHNLPFLEELYLSNNMFY 270
+ L L+ L L N Y
Sbjct: 168 LNGLENLDTLLLQENSLY 185
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 63/121 (52%), Gaps = 8/121 (6%)
Query: 422 SNLTKLEKLDLQYNRLQGTIPYAGH-LFQLQWLDLSDNQLSGSLPSFKFK-MPLLQFLDL 479
L L LDL +N+LQ ++P G L L LD+S N+L+ SLP + + LQ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 480 SSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPN-CSYLRILVVQFNNFSGAIP 538
N L T LP + P LE+L L+NN E+P+ N L L++Q N+ IP
Sbjct: 132 KGNELKT-LPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIP 188
Query: 539 K 539
K
Sbjct: 189 K 189
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Query: 22 RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNAL 81
R+T LN+ LT G L L TLDLS N S+P + +L ++ N L
Sbjct: 56 RLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
Query: 82 FGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDF 130
LP L L+ L+LK N P L+ +L + SL+ N+
Sbjct: 113 T-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALF 82
+T L++S LT L L LQ L L N P + L ++ NN L
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 83 GELPPNFCNHLSNLESLFLKSNMFH 107
ELP N L NL++L L+ N +
Sbjct: 162 -ELPAGLLNGLENLDTLLLQENSLY 185
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 72/195 (36%), Gaps = 31/195 (15%)
Query: 262 LYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTI 321
L+LS N+ Y S Y R+ L + + L L LDL +N+LQ
Sbjct: 36 LHLSENLLY--TFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ--- 90
Query: 322 LYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEE 381
SLP +P L LD+S NRL+ LP L L+E
Sbjct: 91 ---------------------SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQE 128
Query: 382 LYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTI 441
LYL N P L L L NN ++ L L+ L LQ N L TI
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI 187
Query: 442 P---YAGHLFQLQWL 453
P + HL +L
Sbjct: 188 PKGFFGSHLLPFAFL 202
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 416 AIPKEISNLTKLEKLDLQYNRLQGTIPYAG--HLFQLQWLDLSDNQLSGSLPSFKFKMPL 473
++P L L LD+ +NRL ++P L +LQ L L N+L P P
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 474 LQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFY 510
L+ L L++N L TELP + + L L+ L L N Y
Sbjct: 150 LEKLSLANNNL-TELPAGLLNGLENLDTLLLQENSLY 185
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 12/138 (8%)
Query: 135 TKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQY 194
T+ N + L+K G +P L L L N ++P L L LD+ +
Sbjct: 58 TQLNLDRAELTKLQVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF 109
Query: 195 NKLQGTIPYAG--HLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNV 252
N+L ++P L +LQ L L N+L P P L+ L L++N L+ ELP +
Sbjct: 110 NRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGL 167
Query: 253 FHNLPFLEELYLSNNMFY 270
+ L L+ L L N Y
Sbjct: 168 LNGLENLDTLLLQENSLY 185
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 63/121 (52%), Gaps = 8/121 (6%)
Query: 422 SNLTKLEKLDLQYNRLQGTIPYAGH-LFQLQWLDLSDNQLSGSLPSFKFK-MPLLQFLDL 479
L L LDL +N+LQ ++P G L L LD+S N+L+ SLP + + LQ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 480 SSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPN-CSYLRILVVQFNNFSGAIP 538
N L T LP + P LE+L L+NN E+P+ N L L++Q N+ IP
Sbjct: 132 KGNELKT-LPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIP 188
Query: 539 K 539
K
Sbjct: 189 K 189
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Query: 22 RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNAL 81
R+T LN+ LT G L L TLDLS N S+P + +L ++ N L
Sbjct: 56 RLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
Query: 82 FGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDF 130
LP L L+ L+LK N P L+ +L + SL+ N+
Sbjct: 113 T-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALF 82
+T L++S LT L L LQ L L N P + L ++ NN L
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 83 GELPPNFCNHLSNLESLFLKSNMFH 107
ELP N L NL++L L+ N +
Sbjct: 162 -ELPAGLLNGLENLDTLLLQENSLY 185
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 72/195 (36%), Gaps = 31/195 (15%)
Query: 262 LYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTI 321
L+LS N+ Y S Y R+ L + + L L LDL +N+LQ
Sbjct: 36 LHLSENLLYTF--SLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ--- 90
Query: 322 LYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEE 381
SLP +P L LD+S NRL+ LP L L+E
Sbjct: 91 ---------------------SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQE 128
Query: 382 LYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTI 441
LYL N P L L L NN ++ L L+ L LQ N L TI
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI 187
Query: 442 P---YAGHLFQLQWL 453
P + HL +L
Sbjct: 188 PKGFFGSHLLPFAFL 202
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 416 AIPKEISNLTKLEKLDLQYNRLQGTIPYAG--HLFQLQWLDLSDNQLSGSLPSFKFKMPL 473
++P L L LD+ +NRL ++P L +LQ L L N+L P P
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 474 LQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFY 510
L+ L L++N L TELP + + L L+ L L N Y
Sbjct: 150 LEKLSLANNNL-TELPAGLLNGLENLDTLLLQENSLY 185
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 12/138 (8%)
Query: 135 TKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQY 194
T+ N + L+K G +P L L L N ++P L L LD+ +
Sbjct: 58 TQLNLDRCELTKLQVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF 109
Query: 195 NKLQGTIPYAG--HLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNV 252
N+L ++P L +LQ L L N+L P P L+ L L++N L+ ELP +
Sbjct: 110 NRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGL 167
Query: 253 FHNLPFLEELYLSNNMFY 270
+ L L+ L L N Y
Sbjct: 168 LNGLENLDTLLLQENSLY 185
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 63/121 (52%), Gaps = 8/121 (6%)
Query: 422 SNLTKLEKLDLQYNRLQGTIPYAGH-LFQLQWLDLSDNQLSGSLPSFKFK-MPLLQFLDL 479
L L LDL +N+LQ ++P G L L LD+S N+L+ SLP + + LQ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 480 SSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPN-CSYLRILVVQFNNFSGAIP 538
N L T LP + P LE+L L+NN E+P+ N L L++Q N+ IP
Sbjct: 132 KGNELKT-LPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIP 188
Query: 539 K 539
K
Sbjct: 189 K 189
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Query: 22 RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNAL 81
R+T LN+ LT G L L TLDLS N S+P + +L ++ N L
Sbjct: 56 RLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
Query: 82 FGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDF 130
LP L L+ L+LK N P L+ +L + SL+ N+
Sbjct: 113 T-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALF 82
+T L++S LT L L LQ L L N P + L ++ NN L
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 83 GELPPNFCNHLSNLESLFLKSNMFH 107
ELP N L NL++L L+ N +
Sbjct: 162 -ELPAGLLNGLENLDTLLLQENSLY 185
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 129/502 (25%), Positives = 216/502 (43%), Gaps = 89/502 (17%)
Query: 43 NLSSLQTLDLSFNWFSGSIPASIFN-MSSLLSINFINNALFGELPPNFCNHLSNLESLFL 101
+L SL+ LDLS N S S+ +S F +SSL +N + N + +L+NL++L +
Sbjct: 98 SLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 156
Query: 102 KSNMFHGKIP----STLSSCKRLRETSLSLNDFFWDHTK--RNWQQ--LYLSKNMFYGEI 153
+ +I + L+S L +LSL ++ K R+ L+LS++ F EI
Sbjct: 157 GNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEI 216
Query: 154 PSDIANCSYLRILVLQFNN-----FSGAIPKEISNLTKLEKL--------DLQYNKLQGT 200
+DI S +R L L+ N FS E+S + ++KL D +N+L
Sbjct: 217 FADIL--SSVRYLELRDTNLARFQFSPLPVDEVS--SPMKKLAFRGSVLTDESFNELLKL 272
Query: 201 IPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLE 260
+ Y L ++++ D + N L PS D+ S E T ++P
Sbjct: 273 LRYILELSEVEFDDCTLNGLGDFNPSES---------DVVSELGKVETVTIRRLHIP--- 320
Query: 261 ELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRL-QG 319
+ YL FY + S L K++++ ++ +++
Sbjct: 321 QFYL----FYD-------------------------LSTVYSLLEKVKRITVENSKVFLV 351
Query: 320 TILYVGHLLQLQWLDLSDNQLSGSL---PSFKFNMPLLQFLDLSSNRL-SVELPTNVFHN 375
+ HL L++LDLS+N + + K P LQ L LS N L S++ +
Sbjct: 352 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT 411
Query: 376 LPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNF---PGAIPKEISNLTKLEKLDL 432
L L L +S N F+ +P Q +R L L IP+ LE LD+
Sbjct: 412 LKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQ------TLEVLDV 464
Query: 433 QYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNV 492
N L ++ L +LQ L +S N+L +LP P+L + ++SN+L + +P +
Sbjct: 465 SNNNLDS---FSLFLPRLQELYISRNKLK-TLPDASL-FPVLLVMKIASNQLKS-VPDGI 518
Query: 493 FHNLPFLEELYLSNNMFYGEIP 514
F L L++++L N + P
Sbjct: 519 FDRLTSLQKIWLHTNPWDCSCP 540
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 96/393 (24%), Positives = 169/393 (43%), Gaps = 41/393 (10%)
Query: 150 YGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQ---YNKLQGTIPYAGH 206
+ IPS + + ++ L L FN + ++ L+ L L+ N ++G Y+
Sbjct: 43 FTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYS-- 98
Query: 207 LYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSN 266
L L+ LDLSDN LS S+ + L++L+L N T++F NL L+ L + N
Sbjct: 99 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 158
Query: 267 NMFYGEIP----SDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTIL 322
+ EI + + + L I L N+ K I ++ L L L + I
Sbjct: 159 VETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL-TLHLSESAFLLEI- 216
Query: 323 YVGHLLQLQWLDLSDNQLS----GSLPSFKFNMPLLQFL-------DLSSN------RLS 365
+ L +++L+L D L+ LP + + P+ + D S N R
Sbjct: 217 FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 276
Query: 366 VELPTNVFHNLPF--LEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISN 423
+EL F + L + S + E+ + + R+ + +F F + S
Sbjct: 277 LELSEVEFDDCTLNGLGDFNPSESDVVSEL-GKVETVTIRRLHIPQFYLFYD-LSTVYSL 334
Query: 424 LTKLEKLDLQYNRLQGTIP--YAGHLFQLQWLDLSDNQLSGSL---PSFKFKMPLLQFLD 478
L K++++ ++ +++ +P ++ HL L++LDLS+N + + K P LQ L
Sbjct: 335 LEKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 393
Query: 479 LSSNRLSTELPTN-VFHNLPFLEELYLSNNMFY 510
LS N L + T + L L L +S N F+
Sbjct: 394 LSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 426
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 23/118 (19%)
Query: 396 DTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDL 455
D + C+ L++L+LK + + N ++G Y+ L L+ LDL
Sbjct: 71 DLRACANLQVLILKSS---------------------RINTIEGDAFYS--LGSLEHLDL 107
Query: 456 SDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEI 513
SDN LS S+ + L++L+L N T T++F NL L+ L + N + EI
Sbjct: 108 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI 165
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 72/195 (36%), Gaps = 31/195 (15%)
Query: 262 LYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTI 321
L+LS N+ Y S Y R+ L + + L L LDL +N+LQ
Sbjct: 36 LHLSENLLY--TFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ--- 90
Query: 322 LYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEE 381
SLP +P L LD+S NRL+ LP L L+E
Sbjct: 91 ---------------------SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQE 128
Query: 382 LYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTI 441
LYL N P L L L NN ++ L L+ L LQ N L TI
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI 187
Query: 442 P---YAGHLFQLQWL 453
P + HL +L
Sbjct: 188 PKGFFGSHLLPFAFL 202
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 416 AIPKEISNLTKLEKLDLQYNRLQGTIPYAG--HLFQLQWLDLSDNQLSGSLPSFKFKMPL 473
++P L L LD+ +NRL ++P L +LQ L L N+L P P
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 474 LQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFY 510
L+ L L++N L TELP + + L L+ L L N Y
Sbjct: 150 LEKLSLANNNL-TELPAGLLNGLENLDTLLLQENSLY 185
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 12/138 (8%)
Query: 135 TKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQY 194
T+ N + L+K G +P L L L N ++P L L LD+ +
Sbjct: 58 TQLNLDRAELTKLQVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF 109
Query: 195 NKLQGTIPYAG--HLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNV 252
N+L ++P L +LQ L L N+L P P L+ L L++N L+ ELP +
Sbjct: 110 NRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGL 167
Query: 253 FHNLPFLEELYLSNNMFY 270
+ L L+ L L N Y
Sbjct: 168 LNGLENLDTLLLQENSLY 185
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 63/121 (52%), Gaps = 8/121 (6%)
Query: 422 SNLTKLEKLDLQYNRLQGTIPYAGH-LFQLQWLDLSDNQLSGSLPSFKFK-MPLLQFLDL 479
L L LDL +N+LQ ++P G L L LD+S N+L+ SLP + + LQ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 480 SSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPN-CSYLRILVVQFNNFSGAIP 538
N L T LP + P LE+L L+NN E+P+ N L L++Q N+ IP
Sbjct: 132 KGNELKT-LPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIP 188
Query: 539 K 539
K
Sbjct: 189 K 189
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Query: 22 RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNAL 81
R+T LN+ LT G L L TLDLS N S+P + +L ++ N L
Sbjct: 56 RLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
Query: 82 FGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDF 130
LP L L+ L+LK N P L+ +L + SL+ N+
Sbjct: 113 T-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALF 82
+T L++S LT L L LQ L L N P + L ++ NN L
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 83 GELPPNFCNHLSNLESLFLKSNMFH 107
ELP N L NL++L L+ N +
Sbjct: 162 -ELPAGLLNGLENLDTLLLQENSLY 185
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 57/129 (44%), Gaps = 4/129 (3%)
Query: 379 LEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQ 438
++ L LSNN SD Q C L+ LVL N S+L LE LDL YN L
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 439 G-TIPYAGHLFQLQWLDLSDN--QLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHN 495
+ + L L +L+L N + G F + LQ L + + T++ F
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSH-LTKLQILRVGNMDTFTKIQRKDFAG 172
Query: 496 LPFLEELYL 504
L FLEEL +
Sbjct: 173 LTFLEELEI 181
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 108/268 (40%), Gaps = 15/268 (5%)
Query: 259 LEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQ 318
++ L LSNN SD C L+ LVL N + S+L LE LDL YN L
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 319 G-TILYVGHLLQLQWLDLSDN--QLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHN 375
+ + L L +L+L N + G F ++ LQ L + + ++ F
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS-HLTKLQILRVGNMDTFTKIQRKDFAG 172
Query: 376 LPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYN 435
L FLEEL + + P ++ + L+L + + + +E L+L+
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232
Query: 436 RLQ---------GTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLST 486
L G F + + ++D L + LL+ L+ S N+L +
Sbjct: 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLE-LEFSRNQLKS 291
Query: 487 ELPTNVFHNLPFLEELYLSNNMFYGEIP 514
+P +F L L++++L N + P
Sbjct: 292 -VPDGIFDRLTSLQKIWLHTNPWDCSCP 318
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 78/331 (23%), Positives = 127/331 (38%), Gaps = 55/331 (16%)
Query: 140 QQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQG 199
+ L LS N SD+ C L+ LVL N + S+L LE LDL YN L
Sbjct: 55 KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL-- 112
Query: 200 TIPYAGHLYQLQWLDLSDNQLSGSLPSFKFK-MPLLQFLDLSSNRLSAELPTNVFHNLPF 258
+L S FK + L FL+L N T++F +L
Sbjct: 113 ----------------------SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK 150
Query: 259 LEELYLSNNMFYGEIP-SDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRL 317
L+ L + N + +I D A ++L L + ++ PK + ++ + L L
Sbjct: 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK-- 208
Query: 318 QGTIL---YVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFH 374
Q +L +V ++ L+L D L F +LS+ + + F
Sbjct: 209 QHILLLEIFVDVTSSVECLELRDTDLD-----------TFHFSELSTGETNSLIKKFTFR 257
Query: 375 NLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFN-NFPGAIPKEI-SNLTKLEKLDL 432
N+ +E +I +L L+F+ N ++P I LT L+K+ L
Sbjct: 258 NVKITDESLFQVMKLLNQISG---------LLELEFSRNQLKSVPDGIFDRLTSLQKIWL 308
Query: 433 QYNRLQGTIPYAGHLFQLQWLDLSDNQLSGS 463
N + P +L +WL+ + + GS
Sbjct: 309 HTNPWDCSCPRIDYLS--RWLNKNSQKEQGS 337
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 261 ELYLSNNMFYGEIPSDT--ANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQ 318
EL L++N G I SD +L L L+ N +G P + +++L L N+++
Sbjct: 33 ELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 319 --GTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSN 362
+++G L QL+ L+L DNQ+S +P ++ L L+L+SN
Sbjct: 92 EISNKMFLG-LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 10/101 (9%)
Query: 144 LSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQ--GTI 201
+S + +G +P +L L L+ N +G P + +++L L NK++
Sbjct: 44 ISSDGLFGRLP-------HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK 96
Query: 202 PYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSN 242
+ G L+QL+ L+L DNQ+S +P + L L+L+SN
Sbjct: 97 MFLG-LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 10/101 (9%)
Query: 384 LSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQ--GTI 441
+S++ +G +P +L L LK N G P + +++L L N+++
Sbjct: 44 ISSDGLFGRLP-------HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK 96
Query: 442 PYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSN 482
+ G L QL+ L+L DNQ+S +P + L L+L+SN
Sbjct: 97 MFLG-LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 59/123 (47%), Gaps = 20/123 (16%)
Query: 412 NFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA-GHLFQLQWLDLSDNQLSGSLPSFKF- 469
+ P IP T + L L N++ P L QL +L+L+ NQL+ +LP F
Sbjct: 33 SVPAGIP------TTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLT-ALPVGVFD 85
Query: 470 KMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCS---YLRIL 526
K+ L L L N+L + +P VF NL L +YL NN + E CS YL+
Sbjct: 86 KLTKLTHLALHINQLKS-IPMGVFDNLKSLTHIYLFNNPWDCE-------CSDILYLKNW 137
Query: 527 VVQ 529
+VQ
Sbjct: 138 IVQ 140
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 6/100 (6%)
Query: 175 GAIPKEISNLTKLEKLDL-QYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKF-KMP 232
++P I T++ L + Q KL+ + L QL +L+L+ NQL+ +LP F K+
Sbjct: 32 ASVPAGIPTTTQVLHLYINQITKLEPGV--FDSLTQLTYLNLAVNQLT-ALPVGVFDKLT 88
Query: 233 LLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGE 272
L L L N+L + +P VF NL L +YL NN + E
Sbjct: 89 KLTHLALHINQLKS-IPMGVFDNLKSLTHIYLFNNPWDCE 127
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 295 GAIPKEISNLTKLEKLDL-QYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFN-MP 352
++P I T++ L + Q +L+ + L QL +L+L+ NQL+ +LP F+ +
Sbjct: 32 ASVPAGIPTTTQVLHLYINQITKLEPGVF--DSLTQLTYLNLAVNQLT-ALPVGVFDKLT 88
Query: 353 LLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGE 392
L L L N+L +P VF NL L +YL NN + E
Sbjct: 89 KLTHLALHINQLK-SIPMGVFDNLKSLTHIYLFNNPWDCE 127
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 96/393 (24%), Positives = 169/393 (43%), Gaps = 41/393 (10%)
Query: 150 YGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQ---YNKLQGTIPYAGH 206
+ IPS + + ++ L L FN + ++ L+ L L+ N ++G Y+
Sbjct: 17 FTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYS-- 72
Query: 207 LYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSN 266
L L+ LDLSDN LS S+ + L++L+L N T++F NL L+ L + N
Sbjct: 73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 132
Query: 267 NMFYGEIP----SDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTIL 322
+ EI + + + L I L N+ K I ++ L L L + I
Sbjct: 133 VETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL-TLHLSESAFLLEI- 190
Query: 323 YVGHLLQLQWLDLSDNQLS----GSLPSFKFNMPLLQFL-------DLSSN------RLS 365
+ L +++L+L D L+ LP + + P+ + D S N R
Sbjct: 191 FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250
Query: 366 VELPTNVFHNLPF--LEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISN 423
+EL F + L + S + E+ + + R+ + +F F + S
Sbjct: 251 LELSEVEFDDCTLNGLGDFNPSESDVVSEL-GKVETVTIRRLHIPQFYLFYD-LSTVYSL 308
Query: 424 LTKLEKLDLQYNRLQGTIP--YAGHLFQLQWLDLSDNQLSGSL---PSFKFKMPLLQFLD 478
L K++++ ++ +++ +P ++ HL L++LDLS+N + + K P LQ L
Sbjct: 309 LEKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367
Query: 479 LSSNRLSTELPTN-VFHNLPFLEELYLSNNMFY 510
LS N L + T + L L L +S N F+
Sbjct: 368 LSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 130/486 (26%), Positives = 215/486 (44%), Gaps = 89/486 (18%)
Query: 43 NLSSLQTLDLSFNWFSGSIPASIFN-MSSLLSINFINNALFGELPPNFCNHLSNLESLFL 101
+L SL+ LDLS N S S+ +S F +SSL +N + N + +L+NL++L +
Sbjct: 72 SLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130
Query: 102 KSNMFHGKIP----STLSSCKRLRETSLSLNDFFWDHTK--RNWQQ--LYLSKNMFYGEI 153
+ +I + L+S L +LSL ++ K R+ L+LS++ F EI
Sbjct: 131 GNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEI 190
Query: 154 PSDIANCSYLRILVLQFNN-----FSGAIPKEISNLTKLEKL--------DLQYNKLQGT 200
+DI S +R L L+ N FS E+S + ++KL D +N+L
Sbjct: 191 FADIL--SSVRYLELRDTNLARFQFSPLPVDEVS--SPMKKLAFRGSVLTDESFNELLKL 246
Query: 201 IPYAGHLYQLQWLDLSDNQLSGSLPS----------------FKFKMPLLQ-FLDLSS-- 241
+ Y L ++++ D + N L PS + +P F DLS+
Sbjct: 247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY 306
Query: 242 ------NRLSAE------LPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCS----YLRI 285
R++ E +P + +L LE L LS N+ E ++A C L+
Sbjct: 307 SLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSA-CKGAWPSLQT 365
Query: 286 LVLRFNNF-----SGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQL 340
LVL N+ +G I + NLT LD+ N ++++L+LS
Sbjct: 366 LVLSQNHLRSMQKTGEILLTLKNLT---SLDISRNTFHPMPDSCQWPEKMRFLNLS---- 418
Query: 341 SGSLPSFKFNMP-LLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQN 399
S + K +P L+ LD+S+N L ++F LP L+ELY+S N +P +
Sbjct: 419 STGIRVVKTCIPQTLEVLDVSNNNLD---SFSLF--LPRLQELYISRNKL-KTLPDASL- 471
Query: 400 CSYLRILVLKFN-NFPGAIPKEI-SNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSD 457
+ +LV+K + N ++P I LT L+K+ L N + P +L +WL+ +
Sbjct: 472 --FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS--RWLNKNS 527
Query: 458 NQLSGS 463
+ GS
Sbjct: 528 QKEQGS 533
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 23/118 (19%)
Query: 396 DTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDL 455
D + C+ L++L+LK + + N ++G Y+ L L+ LDL
Sbjct: 45 DLRACANLQVLILKSS---------------------RINTIEGDAFYS--LGSLEHLDL 81
Query: 456 SDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEI 513
SDN LS S+ + L++L+L N T T++F NL L+ L + N + EI
Sbjct: 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI 139
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 130/551 (23%), Positives = 228/551 (41%), Gaps = 85/551 (15%)
Query: 9 CNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNM 68
C+ +G+ CD R+ T+ IPS G +++++LDLSFN + I
Sbjct: 4 CDASGV-CDGRSRSFTS-----------IPS--GLTAAMKSLDLSFNKIT-YIGHGDLRA 48
Query: 69 SSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPS---TLSSCKRLR---- 121
+ L + + ++ + + L +LE L L N S LSS K L
Sbjct: 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108
Query: 122 -ETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIP----SDIANCSYLRILVLQFNNFSGA 176
+L + F + T N Q L + + EI + + + + L I L N+
Sbjct: 109 PYQTLGVTSLFPNLT--NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166
Query: 177 IPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQF 236
K I ++ L L L + I +A L +++L+L D L+ +F+ L
Sbjct: 167 SLKSIRDIHHL-TLHLSESAFLLEI-FADILSSVRYLELRDTNLA------RFQFSPLPV 218
Query: 237 LDLSSNRLSAELPTNVFHNLPFLEELYLSNNMF-YGEIPSDTANCSYLRILVLRFNNFSG 295
++SS +V + F E L L + E+ D + L +F+
Sbjct: 219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL-------GDFNP 271
Query: 296 AIPKEISNLTKLEKLDLQYNRLQGTILYVGH--------LLQLQWLDLSDNQLSGSLPSF 347
+ +S L K+E + ++ RL Y+ + L +++ + + ++++ SF
Sbjct: 272 SESDVVSELGKVETVTIR--RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSF 329
Query: 348 KFNMPLLQFLDLSSNRLSVELPTN--VFHNLPFLEELYLSNNMFY-----GEIPSDTQNC 400
++ L+FLDLS N + E N P L+ L LS N GEI +N
Sbjct: 330 SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389
Query: 401 SYLRILVLKFNNFPGAI--PKEIS--NLTK-------------LEKLDLQYNRLQGTIPY 443
+ L I F+ P + P+++ NL+ LE LD+ N L +
Sbjct: 390 TSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDS---F 446
Query: 444 AGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELY 503
+ L +LQ L +S N+L +LP P+L + +S N+L + +P +F L L++++
Sbjct: 447 SLFLPRLQELYISRNKLK-TLPDASL-FPVLLVMKISRNQLKS-VPDGIFDRLTSLQKIW 503
Query: 504 LSNNMFYGEIP 514
L N + P
Sbjct: 504 LHTNPWDCSCP 514
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 57/129 (44%), Gaps = 4/129 (3%)
Query: 379 LEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQ 438
++ L LSNN SD Q C L+ LVL N S+L LE LDL YN L
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 439 G-TIPYAGHLFQLQWLDLSDN--QLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHN 495
+ + L L +L+L N + G F + LQ L + + T++ F
Sbjct: 88 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSH-LTKLQILRVGNMDTFTKIQRKDFAG 146
Query: 496 LPFLEELYL 504
L FLEEL +
Sbjct: 147 LTFLEELEI 155
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 64/151 (42%), Gaps = 7/151 (4%)
Query: 259 LEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQ 318
++ L LSNN SD C L+ LVL N + S+L LE LDL YN L
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 319 G-TILYVGHLLQLQWLDLSDN--QLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHN 375
+ + L L +L+L N + G F ++ LQ L + + ++ F
Sbjct: 88 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS-HLTKLQILRVGNMDTFTKIQRKDFAG 146
Query: 376 LPFLEELYLSNNMFYGEIP---SDTQNCSYL 403
L FLEEL + + P QN S+L
Sbjct: 147 LTFLEELEIDASDLQSYEPKSLKSIQNVSHL 177
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 97/444 (21%), Positives = 170/444 (38%), Gaps = 81/444 (18%)
Query: 140 QQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQG 199
+ L LS N SD+ C L+ LVL N + S+L LE LDL YN L
Sbjct: 29 KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL-- 86
Query: 200 TIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPL--LQFLDLSSNRLSAELPTNVFHNLP 257
+L S FK PL L FL+L N T++F +L
Sbjct: 87 ----------------------SNLSSSWFK-PLSSLTFLNLLGNPYKTLGETSLFSHLT 123
Query: 258 FLEELYLSNNMFYGEIP-SDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNR 316
L+ L + N + +I D A ++L L + ++ PK + ++ + L L
Sbjct: 124 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK- 182
Query: 317 LQGTIL---YVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVF 373
Q +L +V ++ L+L D L F +LS+ + + F
Sbjct: 183 -QHILLLEIFVDVTSSVECLELRDTDLDT-----------FHFSELSTGETNSLIKKFTF 230
Query: 374 HNLPFLEELYLSN----NMFYGEIPSDTQNCSYLRILVLKFNNFPGAI-PKEISNLT--- 425
N+ +E N G + + +C+ + + ++ I P ++ LT
Sbjct: 231 RNVKITDESLFQVMKLLNQISGLLELEFDDCTLNGVGNFRASDNDRVIDPGKVETLTIRR 290
Query: 426 --------------------KLEKLDLQYNRLQGTIP--YAGHLFQLQWLDLSDNQLSGS 463
+++++ ++ +++ +P + HL L++LDLS+N +
Sbjct: 291 LHIPRFYLFYDLSTLYSLTERVKRITVENSKV-FLVPCLLSQHLKSLEYLDLSENLMVEE 349
Query: 464 L---PSFKFKMPLLQFLDLSSNRLST-ELPTNVFHNLPFLEELYLSNNMFYG--EIPSDT 517
+ + P LQ L L N L++ E L L + +S N F+ E
Sbjct: 350 YLKNSACEDAWPSLQTLILRQNHLASLEKTGETLLTLKNLTNIDISKNSFHSMPETCQWP 409
Query: 518 PNCSYLRILVVQFNNFSGAIPKEI 541
YL + + ++ +G IPK +
Sbjct: 410 EKMKYLNLSSTRIHSVTGCIPKTL 433
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 67/145 (46%), Gaps = 5/145 (3%)
Query: 357 LDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGA 416
LDLS N L L + F + P L+ L LS Q+ S+L L+L N
Sbjct: 33 LDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91
Query: 417 IPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQL-SGSLPSFKFKMPLL 474
S L+ L+KL L + GHL L+ L+++ N + S LP + + L
Sbjct: 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151
Query: 475 QFLDLSSNRLSTELPTN--VFHNLP 497
+ LDLSSN++ + T+ V H +P
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMP 176
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 62/156 (39%), Gaps = 35/156 (22%)
Query: 190 LDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLS--GSLPSFKFKMPLLQFLDLSSNRLSAE 247
++L + K+ +P++ + LDLS N L GS F F P LQ LDLS +
Sbjct: 15 MELNFYKIPDNLPFST-----KNLDLSFNPLRHLGSYSFFSF--PELQVLDLSRCEIQT- 66
Query: 248 LPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSG------------ 295
+ + +L L L L+ N + S L+ LV N +
Sbjct: 67 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126
Query: 296 -------------AIPKEISNLTKLEKLDLQYNRLQ 318
+P+ SNLT LE LDL N++Q
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 72/188 (38%), Gaps = 26/188 (13%)
Query: 348 KFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILV 407
+ ++P L+FLDLS N LS F G + L+ L
Sbjct: 343 EVDLPSLEFLDLSRNGLS-----------------------FKGCCSQSDFGTTSLKYLD 379
Query: 408 LKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAG--HLFQLQWLDLSDNQLSGSLP 465
L FN + L +LE LD Q++ L+ ++ L L +LD+S +
Sbjct: 380 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438
Query: 466 SFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRI 525
+ L+ L ++ N ++F L L L LS P+ + S L++
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498
Query: 526 LVVQFNNF 533
L + NNF
Sbjct: 499 LNMSHNNF 506
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 107/281 (38%), Gaps = 62/281 (22%)
Query: 228 KFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILV 287
+ +P L+FLDLS N LS F G + L+ L
Sbjct: 343 EVDLPSLEFLDLSRNGLS-----------------------FKGCCSQSDFGTTSLKYLD 379
Query: 288 LRFNNFSGAIPKEISNLTKLEKLDLQYNRLQG-------------TILYVGH-------- 326
L FN + L +LE LD Q++ L+ L + H
Sbjct: 380 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438
Query: 327 -----LLQLQWLDLSDNQLSGS-LPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLE 380
L L+ L ++ N + LP + L FLDLS +L PT F++L L+
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT-AFNSLSSLQ 497
Query: 381 ELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNL-TKLEKLDLQYNRLQG 439
L +S+N F+ + + L++L N+ + +E+ + + L L+L N
Sbjct: 498 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 557
Query: 440 TIPYAGHLFQLQWLD------LSDNQLSGSLPSFKFKMPLL 474
T + LQW+ + ++ + PS K MP+L
Sbjct: 558 TCEHQSF---LQWIKDQRQLLVEVERMECATPSDKQGMPVL 595
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 51/133 (38%), Gaps = 30/133 (22%)
Query: 333 LDLSDNQLS--GSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFY 390
LDLS N L GS F F P LQ LDLS + + + +L L L L+ N
Sbjct: 33 LDLSFNPLRHLGSYSFFSF--PELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQ 89
Query: 391 GEIPSDTQNCSYLRILVL------KFNNFPGA-------------------IPKEISNLT 425
S L+ LV NFP +P+ SNLT
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 426 KLEKLDLQYNRLQ 438
LE LDL N++Q
Sbjct: 150 NLEHLDLSSNKIQ 162
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 73/148 (49%), Gaps = 11/148 (7%)
Query: 354 LQFLDLSSNRLSVELPTNVFHNLPFLEELYL--SNNMFYGEIPSDTQNCSYLRILVLKFN 411
L+ +++S N + + +VF NLP L E+ + +NN+ Y P QN L+ L++ N
Sbjct: 56 LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPNLQYLLIS-N 113
Query: 412 NFPGAIPKEISNLTKLEK--LDLQYNRLQGTIP---YAGHLFQLQWLDLSDNQLSGSLPS 466
+P ++ + L+K LD+Q N TI + G F+ L L+ N + + +
Sbjct: 114 TGIKHLP-DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHN 171
Query: 467 FKFKMPLLQFLDLSSNRLSTELPTNVFH 494
F L L+LS N ELP +VFH
Sbjct: 172 CAFNGTQLDELNLSDNNNLEELPNDVFH 199
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 73/148 (49%), Gaps = 11/148 (7%)
Query: 234 LQFLDLSSNRLSAELPTNVFHNLPFLEELYL--SNNMFYGEIPSDTANCSYLRILVLRFN 291
L+ +++S N + + +VF NLP L E+ + +NN+ Y P N L+ L++ N
Sbjct: 56 LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPNLQYLLIS-N 113
Query: 292 NFSGAIPKEISNLTKLEK--LDLQYNRLQGTIL---YVGHLLQLQWLDLSDNQLSGSLPS 346
+P ++ + L+K LD+Q N TI +VG + L L+ N + + +
Sbjct: 114 TGIKHLP-DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHN 171
Query: 347 FKFNMPLLQFLDLSSNRLSVELPTNVFH 374
FN L L+LS N ELP +VFH
Sbjct: 172 CAFNGTQLDELNLSDNNNLEELPNDVFH 199
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 96/238 (40%), Gaps = 44/238 (18%)
Query: 190 LDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLS--GSLPSFKFKMPLLQFLDLSSNRLSAE 247
++L + K+ +P++ + LDLS N L GS F F P LQ LDLS +
Sbjct: 15 MELNFYKIPDNLPFST-----KNLDLSFNPLRHLGSYSFFSF--PELQVLDLSRCEIQT- 66
Query: 248 LPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSG------------ 295
+ + +L L L L+ N + S L+ LV N +
Sbjct: 67 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126
Query: 296 -------------AIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSG 342
+P+ SNLT LE LDL N++Q +Y L L + L + L
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS--IYCTDLRVLHQMPLLNLSLDL 184
Query: 343 SLPSFKFNMP------LLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIP 394
SL F P L+ L L +N+L +P +F L L++++L N + P
Sbjct: 185 SLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 241
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 85/215 (39%), Gaps = 39/215 (18%)
Query: 333 LDLSDNQLS--GSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFY 390
LDLS N L GS F F P LQ LDLS + + + +L L L L+ N
Sbjct: 33 LDLSFNPLRHLGSYSFFSF--PELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQ 89
Query: 391 GEIPSDTQNCSYLRILVL------KFNNFPGA-------------------IPKEISNLT 425
S L+ LV NFP +P+ SNLT
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 426 KLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMP------LLQFLDL 479
LE LDL N++Q Y L L + L + L SL F P L+ L L
Sbjct: 150 NLEHLDLSSNKIQSI--YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELAL 207
Query: 480 SSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIP 514
+N+L + +P +F L L++++L N + P
Sbjct: 208 DTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 241
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 177 IPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMP---- 232
+P+ SNLT LE LDL NK+Q Y L L + L + L SL F P
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSI--YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198
Query: 233 --LLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIP 274
L+ L L +N+L + +P +F L L++++L N + P
Sbjct: 199 EIRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 241
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 96/238 (40%), Gaps = 44/238 (18%)
Query: 190 LDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLS--GSLPSFKFKMPLLQFLDLSSNRLSAE 247
++L + K+ +P++ + LDLS N L GS F F P LQ LDLS +
Sbjct: 16 MELNFYKIPDNLPFST-----KNLDLSWNPLRHLGSYSFFSF--PELQVLDLSRCEIQT- 67
Query: 248 LPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSG------------ 295
+ + +L L L L+ N + S L+ LV N +
Sbjct: 68 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 127
Query: 296 -------------AIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSG 342
+P+ SNLT LE LDL N++Q +Y L L + L + L
Sbjct: 128 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS--IYCTDLRVLHQMPLLNLSLDL 185
Query: 343 SLPSFKFNMP------LLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIP 394
SL F P L+ L L +N+L +P +F L L++++L N + P
Sbjct: 186 SLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 242
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 85/215 (39%), Gaps = 39/215 (18%)
Query: 333 LDLSDNQLS--GSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFY 390
LDLS N L GS F F P LQ LDLS + + + +L L L L+ N
Sbjct: 34 LDLSWNPLRHLGSYSFFSF--PELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQ 90
Query: 391 GEIPSDTQNCSYLRILVL------KFNNFPGA-------------------IPKEISNLT 425
S L+ LV NFP +P+ SNLT
Sbjct: 91 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 150
Query: 426 KLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMP------LLQFLDL 479
LE LDL N++Q Y L L + L + L SL F P L+ L L
Sbjct: 151 NLEHLDLSSNKIQSI--YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELAL 208
Query: 480 SSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIP 514
+N+L + +P +F L L++++L N + P
Sbjct: 209 DTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 242
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 177 IPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMP---- 232
+P+ SNLT LE LDL NK+Q Y L L + L + L SL F P
Sbjct: 142 LPEYFSNLTNLEHLDLSSNKIQSI--YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 199
Query: 233 --LLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIP 274
L+ L L +N+L + +P +F L L++++L N + P
Sbjct: 200 EIRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 242
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 96/238 (40%), Gaps = 44/238 (18%)
Query: 190 LDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLS--GSLPSFKFKMPLLQFLDLSSNRLSAE 247
++L + K+ +P++ + LDLS N L GS F F P LQ LDLS +
Sbjct: 17 MELNFYKIPDNLPFST-----KNLDLSWNPLRHLGSYSFFSF--PELQVLDLSRCEIQT- 68
Query: 248 LPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSG------------ 295
+ + +L L L L+ N + S L+ LV N +
Sbjct: 69 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 128
Query: 296 -------------AIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSG 342
+P+ SNLT LE LDL N++Q +Y L L + L + L
Sbjct: 129 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS--IYCTDLRVLHQMPLLNLSLDL 186
Query: 343 SLPSFKFNMP------LLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIP 394
SL F P L+ L L +N+L +P +F L L++++L N + P
Sbjct: 187 SLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 243
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 85/215 (39%), Gaps = 39/215 (18%)
Query: 333 LDLSDNQLS--GSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFY 390
LDLS N L GS F F P LQ LDLS + + + +L L L L+ N
Sbjct: 35 LDLSWNPLRHLGSYSFFSF--PELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQ 91
Query: 391 GEIPSDTQNCSYLRILVL------KFNNFPGA-------------------IPKEISNLT 425
S L+ LV NFP +P+ SNLT
Sbjct: 92 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 151
Query: 426 KLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMP------LLQFLDL 479
LE LDL N++Q Y L L + L + L SL F P L+ L L
Sbjct: 152 NLEHLDLSSNKIQSI--YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELAL 209
Query: 480 SSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIP 514
+N+L + +P +F L L++++L N + P
Sbjct: 210 DTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 243
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 177 IPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMP---- 232
+P+ SNLT LE LDL NK+Q Y L L + L + L SL F P
Sbjct: 143 LPEYFSNLTNLEHLDLSSNKIQSI--YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 200
Query: 233 --LLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIP 274
L+ L L +N+L + +P +F L L++++L N + P
Sbjct: 201 EIRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 243
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 73/148 (49%), Gaps = 11/148 (7%)
Query: 354 LQFLDLSSNRLSVELPTNVFHNLPFLEELYL--SNNMFYGEIPSDTQNCSYLRILVLKFN 411
L+ +++S N + + +VF NLP L E+ + +NN+ Y P QN L+ L++ N
Sbjct: 56 LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPNLQYLLIS-N 113
Query: 412 NFPGAIPKEISNLTKLEK--LDLQYNRLQGTIP---YAGHLFQLQWLDLSDNQLSGSLPS 466
+P ++ + L+K LD+Q N TI + G F+ L L+ N + + +
Sbjct: 114 TGIKHLP-DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHN 171
Query: 467 FKFKMPLLQFLDLSSNRLSTELPTNVFH 494
F L L+LS N ELP +VFH
Sbjct: 172 SAFNGTQLDELNLSDNNNLEELPNDVFH 199
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 73/148 (49%), Gaps = 11/148 (7%)
Query: 234 LQFLDLSSNRLSAELPTNVFHNLPFLEELYL--SNNMFYGEIPSDTANCSYLRILVLRFN 291
L+ +++S N + + +VF NLP L E+ + +NN+ Y P N L+ L++ N
Sbjct: 56 LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPNLQYLLIS-N 113
Query: 292 NFSGAIPKEISNLTKLEK--LDLQYNRLQGTIL---YVGHLLQLQWLDLSDNQLSGSLPS 346
+P ++ + L+K LD+Q N TI +VG + L L+ N + + +
Sbjct: 114 TGIKHLP-DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHN 171
Query: 347 FKFNMPLLQFLDLSSNRLSVELPTNVFH 374
FN L L+LS N ELP +VFH
Sbjct: 172 SAFNGTQLDELNLSDNNNLEELPNDVFH 199
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 96/238 (40%), Gaps = 44/238 (18%)
Query: 190 LDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLS--GSLPSFKFKMPLLQFLDLSSNRLSAE 247
++L + K+ +P++ + LDLS N L GS F F P LQ LDLS +
Sbjct: 17 MELNFYKIPDNLPFST-----KNLDLSFNPLRHLGSYSFFSF--PELQVLDLSRCEIQT- 68
Query: 248 LPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSG------------ 295
+ + +L L L L+ N + S L+ LV N +
Sbjct: 69 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTL 128
Query: 296 -------------AIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSG 342
+P+ SNLT LE LDL N++Q +Y L L + L + L
Sbjct: 129 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS--IYCTDLRVLHQMPLLNLSLDL 186
Query: 343 SLPSFKFNMP------LLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIP 394
SL F P L+ L L +N+L +P +F L L++++L N + P
Sbjct: 187 SLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 243
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 85/215 (39%), Gaps = 39/215 (18%)
Query: 333 LDLSDNQLS--GSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFY 390
LDLS N L GS F F P LQ LDLS + + + +L L L L+ N
Sbjct: 35 LDLSFNPLRHLGSYSFFSF--PELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQ 91
Query: 391 GEIPSDTQNCSYLRILVL------KFNNFPGA-------------------IPKEISNLT 425
S L+ LV NFP +P+ SNLT
Sbjct: 92 SLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 151
Query: 426 KLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMP------LLQFLDL 479
LE LDL N++Q Y L L + L + L SL F P L+ L L
Sbjct: 152 NLEHLDLSSNKIQSI--YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELAL 209
Query: 480 SSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIP 514
+N+L + +P +F L L++++L N + P
Sbjct: 210 DTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 243
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 177 IPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMP---- 232
+P+ SNLT LE LDL NK+Q Y L L + L + L SL F P
Sbjct: 143 LPEYFSNLTNLEHLDLSSNKIQSI--YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 200
Query: 233 --LLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIP 274
L+ L L +N+L + +P +F L L++++L N + P
Sbjct: 201 EIRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 243
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 85/215 (39%), Gaps = 39/215 (18%)
Query: 333 LDLSDNQLS--GSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFY 390
LDLS N L GS F F P LQ LDLS + + + +L L L L+ N
Sbjct: 34 LDLSFNPLRHLGSYSFFSF--PELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQ 90
Query: 391 GEIPSDTQNCSYLRILVL------KFNNFPGA-------------------IPKEISNLT 425
S L+ LV NFP +P+ SNLT
Sbjct: 91 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 150
Query: 426 KLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMP------LLQFLDL 479
LE LDL N++Q Y L L + L + L SL F P L+ L L
Sbjct: 151 NLEHLDLSSNKIQSI--YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELAL 208
Query: 480 SSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIP 514
+N+L + +P +F L L++++L N + P
Sbjct: 209 DTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 242
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 95/237 (40%), Gaps = 44/237 (18%)
Query: 191 DLQYNKLQGTIPYAGHLYQLQWLDLSDNQLS--GSLPSFKFKMPLLQFLDLSSNRLSAEL 248
+L + K+ +P++ + LDLS N L GS F F P LQ LDLS + +
Sbjct: 17 ELNFYKIPDNLPFST-----KNLDLSFNPLRHLGSYSFFSF--PELQVLDLSRCEIQT-I 68
Query: 249 PTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSG------------- 295
+ +L L L L+ N + S L+ LV N +
Sbjct: 69 EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 128
Query: 296 ------------AIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGS 343
+P+ SNLT LE LDL N++Q +Y L L + L + L S
Sbjct: 129 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS--IYCTDLRVLHQMPLLNLSLDLS 186
Query: 344 LPSFKFNMP------LLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIP 394
L F P L+ L L +N+L +P +F L L++++L N + P
Sbjct: 187 LNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 242
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 177 IPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMP---- 232
+P+ SNLT LE LDL NK+Q Y L L + L + L SL F P
Sbjct: 142 LPEYFSNLTNLEHLDLSSNKIQSI--YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 199
Query: 233 --LLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIP 274
L+ L L +N+L + +P +F L L++++L N + P
Sbjct: 200 EIRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 242
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 284 RILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVG---HLLQLQWLDLSDNQL 340
++L L N + P LT+L +LDL N+L T+L G L QL L L+DNQL
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL--TVLPAGVFDKLTQLTQLSLNDNQL 90
Query: 341 SGSLPSFKFN 350
S+P F+
Sbjct: 91 K-SIPRGAFD 99
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 151 GEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAG---HL 207
+P+ I + ++L L N + P LT+L +LDL N+L T+ AG L
Sbjct: 22 ASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL--TVLPAGVFDKL 77
Query: 208 YQLQWLDLSDNQLSGSLPSFKF 229
QL L L+DNQL S+P F
Sbjct: 78 TQLTQLSLNDNQLK-SIPRGAF 98
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 39/80 (48%), Gaps = 12/80 (15%)
Query: 393 IPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAG---HLFQ 449
IP+ TQ +L L N P LT+L +LDL N+L T+ AG L Q
Sbjct: 28 IPTTTQ------VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL--TVLPAGVFDKLTQ 79
Query: 450 LQWLDLSDNQLSGSLPSFKF 469
L L L+DNQL S+P F
Sbjct: 80 LTQLSLNDNQLK-SIPRGAF 98
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 331 QWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMF 389
Q L L DNQ++ P + L LDL +N+L+V LP VF L L +L L++N
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDNQL 90
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 451 QWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMF 509
Q L L DNQ++ P ++ L LDL +N+L T LP VF L L +L L++N
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL-TVLPAGVFDKLTQLTQLSLNDNQL 90
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 284 RILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVG---HLLQLQWLDLSDNQL 340
++L L N + P LT+L +LDL N+L T+L G L QL L L+DNQL
Sbjct: 41 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL--TVLPAGVFDKLTQLTQLSLNDNQL 98
Query: 341 SGSLPSFKFN 350
S+P F+
Sbjct: 99 K-SIPRGAFD 107
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 151 GEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAG---HL 207
+P+ I + ++L L N + P LT+L +LDL N+L T+ AG L
Sbjct: 30 ASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL--TVLPAGVFDKL 85
Query: 208 YQLQWLDLSDNQLSGSLPSFKF 229
QL L L+DNQL S+P F
Sbjct: 86 TQLTQLSLNDNQLK-SIPRGAF 106
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 331 QWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMF 389
Q L L DNQ++ P + L LDL +N+L+V LP VF L L +L L++N
Sbjct: 41 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDNQL 98
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 39/80 (48%), Gaps = 12/80 (15%)
Query: 393 IPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAG---HLFQ 449
IP+ TQ +L L N P LT+L +LDL N+L T+ AG L Q
Sbjct: 36 IPTTTQ------VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL--TVLPAGVFDKLTQ 87
Query: 450 LQWLDLSDNQLSGSLPSFKF 469
L L L+DNQL S+P F
Sbjct: 88 LTQLSLNDNQLK-SIPRGAF 106
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 451 QWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMF 509
Q L L DNQ++ P ++ L LDL +N+L T LP VF L L +L L++N
Sbjct: 41 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL-TVLPAGVFDKLTQLTQLSLNDNQL 98
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Query: 357 LDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGA 416
L L++N +V T +F LP L ++ SNN + S + ++L N
Sbjct: 37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV 96
Query: 417 IPKEISNLTKLEKLDLQYNRLQ--GTIPYAGHLFQLQWLDLSDNQLSGSLPS 466
K L L+ L L+ NR+ G + G L ++ L L DNQ++ P
Sbjct: 97 QHKMFKGLESLKTLMLRSNRITCVGNDSFIG-LSSVRLLSLYDNQITTVAPG 147
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 3/128 (2%)
Query: 237 LDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGA 296
L L++N + T +F LP L ++ SNN S + ++L N
Sbjct: 37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV 96
Query: 297 IPKEISNLTKLEKLDLQYNRLQ--GTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLL 354
K L L+ L L+ NR+ G ++G L ++ L L DNQ++ P + L
Sbjct: 97 QHKMFKGLESLKTLMLRSNRITCVGNDSFIG-LSSVRLLSLYDNQITTVAPGAFDTLHSL 155
Query: 355 QFLDLSSN 362
L+L +N
Sbjct: 156 STLNLLAN 163
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 16/117 (13%)
Query: 404 RILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIP-YAGHLFQ----LQWLDLSDN 458
R + + P + ++ NL+ LE L+ I HLF L+ ++ N
Sbjct: 129 RFTTRRLTHIPANLLTDMRNLSHLE--------LRANIEEMPSHLFDDLENLESIEFGSN 180
Query: 459 QLSGSLPSFKF-KMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIP 514
+L +P F KMP L+ L+L+SN+L + +P +F L L++++L N + P
Sbjct: 181 KLR-QMPRGIFGKMPKLKQLNLASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 235
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 181 ISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKF-KMPLLQFLDL 239
++++ L L+L+ N + L L+ ++ N+L +P F KMP L+ L+L
Sbjct: 143 LTDMRNLSHLELRANIEEMPSHLFDDLENLESIEFGSNKLR-QMPRGIFGKMPKLKQLNL 201
Query: 240 SSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIP 274
+SN+L + +P +F L L++++L N + P
Sbjct: 202 ASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 235
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 301 ISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFN-MPLLQFLDL 359
++++ L L+L+ N + L L+ ++ N+L +P F MP L+ L+L
Sbjct: 143 LTDMRNLSHLELRANIEEMPSHLFDDLENLESIEFGSNKLR-QMPRGIFGKMPKLKQLNL 201
Query: 360 SSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIP 394
+SN+L +P +F L L++++L N + P
Sbjct: 202 ASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 235
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 284 RILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVG---HLLQLQWLDLSDNQL 340
++L L N + P LT+L +LDL N+L T+L G L QL L L+DNQL
Sbjct: 33 QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQL--TVLPAGVFDKLTQLTQLSLNDNQL 90
Query: 341 SGSLPSFKFN 350
S+P F+
Sbjct: 91 K-SIPRGAFD 99
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 151 GEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAG---HL 207
+P+ I + ++L L N + P LT+L +LDL N+L T+ AG L
Sbjct: 22 ASVPTGIP--TTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQL--TVLPAGVFDKL 77
Query: 208 YQLQWLDLSDNQLSGSLPSFKF 229
QL L L+DNQL S+P F
Sbjct: 78 TQLTQLSLNDNQLK-SIPRGAF 98
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 39/80 (48%), Gaps = 12/80 (15%)
Query: 393 IPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAG---HLFQ 449
IP+ TQ +L L N P LT+L +LDL N+L T+ AG L Q
Sbjct: 28 IPTTTQ------VLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQL--TVLPAGVFDKLTQ 79
Query: 450 LQWLDLSDNQLSGSLPSFKF 469
L L L+DNQL S+P F
Sbjct: 80 LTQLSLNDNQLK-SIPRGAF 98
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 331 QWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMF 389
Q L L DN+++ P + L LDL +N+L+V LP VF L L +L L++N
Sbjct: 33 QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDNQL 90
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 87/219 (39%), Gaps = 60/219 (27%)
Query: 297 IPKEISNLTKLEKLDLQYN---RLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPL 353
+P+ + + T L LDL +N RL+ L L L LS N L+ +P
Sbjct: 33 VPQSLPSYTAL--LDLSHNNLSRLRAEWTPT-RLTNLHSLLLSHNHLNFISSEAFVPVPN 89
Query: 354 LQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNF 413
L++LDLSSN L L +F +L LE L L NN I+V+ N F
Sbjct: 90 LRYLDLSSNHLHT-LDEFLFSDLQALEVLLLYNN----------------HIVVVDRNAF 132
Query: 414 PGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSG---SLPSFKFK 470
+ QLQ L LS NQ+S L K
Sbjct: 133 ED-------------------------------MAQLQKLYLSQNQISRFPVELIKDGNK 161
Query: 471 MPLLQFLDLSSNRLSTELPTNVFHNLPFLEE--LYLSNN 507
+P L LDLSSN+L +LP LP + LYL NN
Sbjct: 162 LPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNN 199
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 84/218 (38%), Gaps = 58/218 (26%)
Query: 177 IPKEISNLTKLEKLDLQYNKLQGTIP--YAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLL 234
+P+ + + T L LDL +N L L L L LS N L+ +P L
Sbjct: 33 VPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL 90
Query: 235 QFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFS 294
++LDLSSN L L +F +L LE L L NN I+V+ N F
Sbjct: 91 RYLDLSSNHLHT-LDEFLFSDLQALEVLLLYNN----------------HIVVVDRNAFE 133
Query: 295 GAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSG---SLPSFKFNM 351
+ QLQ L LS NQ+S L +
Sbjct: 134 D-------------------------------MAQLQKLYLSQNQISRFPVELIKDGNKL 162
Query: 352 PLLQFLDLSSNRLSVELPTNVFHNLPFLEE--LYLSNN 387
P L LDLSSN+L +LP LP + LYL NN
Sbjct: 163 PKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNN 199
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 97/253 (38%), Gaps = 31/253 (12%)
Query: 222 GSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCS 281
GS+ K +P L +LDLS N LS S Y ++ +++
Sbjct: 335 GSISFKKVALPSLSYLDLSRNALS------------------FSGCCSYSDLGTNS---- 372
Query: 282 YLRILVLRFNNFSGAI--PKEISNLTKLEKLDLQYNRLQGTILYVG--HLLQLQWLDLSD 337
LR L L FN GAI L +L+ LD Q++ L+ + L +L +LD+S
Sbjct: 373 -LRHLDLSFN---GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 428
Query: 338 NQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDT 397
+ L L ++ N +NVF N L L LS
Sbjct: 429 TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF 488
Query: 398 QNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQ-LQWLDLS 456
L++L + NN + L L LD +NR++ + H + L + +L+
Sbjct: 489 DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLT 548
Query: 457 DNQLSGSLPSFKF 469
+N ++ KF
Sbjct: 549 NNSVACICEHQKF 561
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 62/144 (43%), Gaps = 5/144 (3%)
Query: 177 IPKEISNLTKLEKLDLQYNKLQGTIPYA-GHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQ 235
+P +I + TK +DL +N L+ Y+ + +LQWLDLS ++ + L
Sbjct: 21 VPDDIPSSTK--NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 78
Query: 236 FLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNF-S 294
L L+ N + + P + F L LE L L+ L + N S
Sbjct: 79 NLILTGNPIQSFSPGS-FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 137
Query: 295 GAIPKEISNLTKLEKLDLQYNRLQ 318
+P SNLT L +DL YN +Q
Sbjct: 138 CKLPAYFSNLTNLVHVDLSYNYIQ 161
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 97/253 (38%), Gaps = 31/253 (12%)
Query: 222 GSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCS 281
GS+ K +P L +LDLS N LS S Y ++ +++
Sbjct: 340 GSISFKKVALPSLSYLDLSRNALS------------------FSGCCSYSDLGTNS---- 377
Query: 282 YLRILVLRFNNFSGAI--PKEISNLTKLEKLDLQYNRLQGTILYVG--HLLQLQWLDLSD 337
LR L L FN GAI L +L+ LD Q++ L+ + L +L +LD+S
Sbjct: 378 -LRHLDLSFN---GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433
Query: 338 NQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDT 397
+ L L ++ N +NVF N L L LS
Sbjct: 434 TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF 493
Query: 398 QNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQ-LQWLDLS 456
L++L + NN + L L LD +NR++ + H + L + +L+
Sbjct: 494 DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLT 553
Query: 457 DNQLSGSLPSFKF 469
+N ++ KF
Sbjct: 554 NNSVACICEHQKF 566
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 62/144 (43%), Gaps = 5/144 (3%)
Query: 177 IPKEISNLTKLEKLDLQYNKLQGTIPYA-GHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQ 235
+P +I + TK +DL +N L+ Y+ + +LQWLDLS ++ + L
Sbjct: 26 VPDDIPSSTK--NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 83
Query: 236 FLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNF-S 294
L L+ N + + P + F L LE L L+ L + N S
Sbjct: 84 NLILTGNPIQSFSPGS-FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 142
Query: 295 GAIPKEISNLTKLEKLDLQYNRLQ 318
+P SNLT L +DL YN +Q
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQ 166
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 89/227 (39%), Gaps = 48/227 (21%)
Query: 69 SSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFH-----GKIPSTLSSCKRLRET 123
SS +NF N +F + C+ L L++L L+ N + +SS + L +
Sbjct: 353 SSFTFLNFTQN-VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411
Query: 124 SLSLNDFFWDHTKRNWQQ----LYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPK 179
SLN +D T W + L LS NM G + F PK
Sbjct: 412 LNSLNSHAYDRTCA-WAESILVLNLSSNMLTGSV-------------------FRCLPPK 451
Query: 180 EISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKF-KMPLLQFLD 238
++ LDL N++ HL LQ L+++ NQL S+P F ++ LQ++
Sbjct: 452 -------VKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIW 503
Query: 239 LSSNRLSAELPTNVFHNLPFLEELYLSNNMFY----GEIPSDTANCS 281
L N P + +L E ++ G + D+A CS
Sbjct: 504 LHDNPWDCTCP-----GIRYLSEWINKHSGVVRNSAGSVAPDSAKCS 545
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 306 KLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFN-MPLLQFLDLSSNRL 364
K++ LDL NR+ V HL LQ L+++ NQL S+P F+ + LQ++ L N
Sbjct: 451 KVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509
Query: 365 SVELP 369
P
Sbjct: 510 DCTCP 514
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 426 KLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKF-KMPLLQFLDLSSNRL 484
K++ LDL NR+ HL LQ L+++ NQL S+P F ++ LQ++ L N
Sbjct: 451 KVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509
Query: 485 STELP 489
P
Sbjct: 510 DCTCP 514
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 24/122 (19%)
Query: 344 LPSFKFNMPLLQFLDLSSNR-LSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSY 402
LP+F +P Q ++++ NR +S E + + L +D
Sbjct: 265 LPTFLKALPEXQLINVACNRGISGEQLKDDWQAL------------------ADAPVGEK 306
Query: 403 LRILVLKFNN---FPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQ 459
++I+ + +NN FP + + KL L+ YN+L+G +P G +L L+L+ NQ
Sbjct: 307 IQIIYIGYNNLKTFP--VETSLQKXKKLGXLECLYNQLEGKLPAFGSEIKLASLNLAYNQ 364
Query: 460 LS 461
++
Sbjct: 365 IT 366
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 15/91 (16%)
Query: 133 DHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEIS--NLTKLEKL 190
+ K +WQ L +D ++I+ + +NN P E S KL L
Sbjct: 289 EQLKDDWQAL------------ADAPVGEKIQIIYIGYNNLK-TFPVETSLQKXKKLGXL 335
Query: 191 DLQYNKLQGTIPYAGHLYQLQWLDLSDNQLS 221
+ YN+L+G +P G +L L+L+ NQ++
Sbjct: 336 ECLYNQLEGKLPAFGSEIKLASLNLAYNQIT 366
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 106/254 (41%), Gaps = 46/254 (18%)
Query: 262 LYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTI 321
L L NN D +L LVL N S K S L KL+KL + N
Sbjct: 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN------ 112
Query: 322 LYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEE 381
HL+ ++ +LPS L L + NR+ ++P VF L +
Sbjct: 113 ----HLV----------EIPPNLPSS------LVELRIHDNRIR-KVPKGVFSGLRNMNC 151
Query: 382 LYLSNNMFY--GEIPS--DTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRL 437
+ + N G P D +YLRI K P +P+ ++ L L+ +Q L
Sbjct: 152 IEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNEL-HLDHNKIQAIEL 210
Query: 438 QGTIPYAGHLFQLQWLDLSDNQL----SGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVF 493
+ + Y+ +L L L NQ+ +GSL SF +P L+ L L +N+LS +P
Sbjct: 211 EDLLRYS----KLYRLGLGHNQIRMIENGSL-SF---LPTLRELHLDNNKLS-RVPAG-L 260
Query: 494 HNLPFLEELYLSNN 507
+L L+ +YL N
Sbjct: 261 PDLKLLQVVYLHTN 274
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 99/242 (40%), Gaps = 48/242 (19%)
Query: 155 SDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLD 214
D +L LVL N S K S L KL+KL + N L P
Sbjct: 72 DDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP------------ 119
Query: 215 LSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFY--GE 272
+LPS L L + NR+ ++P VF L + + + N G
Sbjct: 120 --------NLPSS------LVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGF 164
Query: 273 IPS--DTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILY-VGHLLQ 329
P D +YLRI + IPK++ L +L L +N++Q L + +
Sbjct: 165 EPGAFDGLKLNYLRISEAKLT----GIPKDLPE--TLNELHLDHNKIQAIELEDLLRYSK 218
Query: 330 LQWLDLSDNQL----SGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLS 385
L L L NQ+ +GSL SF +P L+ L L +N+LS +P +L L+ +YL
Sbjct: 219 LYRLGLGHNQIRMIENGSL-SF---LPTLRELHLDNNKLS-RVPAG-LPDLKLLQVVYLH 272
Query: 386 NN 387
N
Sbjct: 273 TN 274
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 27/91 (29%)
Query: 371 NVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKL 430
N +LP LE LYL NN I VL S LTKL+ L
Sbjct: 146 NGLVHLPQLESLYLGNNKIT-------------DITVL-------------SRLTKLDTL 179
Query: 431 DLQYNRLQGTIPYAGHLFQLQWLDLSDNQLS 461
L+ N++ +P AG L +LQ L LS N +S
Sbjct: 180 SLEDNQISDIVPLAG-LTKLQNLYLSKNHIS 209
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 27/91 (29%)
Query: 371 NVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKL 430
N +LP LE LYL NN I VL S LTKL+ L
Sbjct: 146 NGLVHLPQLESLYLGNNKIT-------------DITVL-------------SRLTKLDTL 179
Query: 431 DLQYNRLQGTIPYAGHLFQLQWLDLSDNQLS 461
L+ N++ +P AG L +LQ L LS N +S
Sbjct: 180 SLEDNQISDIVPLAG-LTKLQNLYLSKNHIS 209
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 27/91 (29%)
Query: 371 NVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKL 430
N +LP LE LYL NN I VL S LTKL+ L
Sbjct: 146 NGLVHLPQLESLYLGNNKIT-------------DITVL-------------SRLTKLDTL 179
Query: 431 DLQYNRLQGTIPYAGHLFQLQWLDLSDNQLS 461
L+ N++ +P AG L +LQ L LS N +S
Sbjct: 180 SLEDNQISDIVPLAG-LTKLQNLYLSKNHIS 209
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 39/87 (44%), Gaps = 27/87 (31%)
Query: 375 NLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQY 434
+LP LE LYL NN I VL S LTKL+ L L+
Sbjct: 130 HLPQLESLYLGNNKITD-------------ITVL-------------SRLTKLDTLSLED 163
Query: 435 NRLQGTIPYAGHLFQLQWLDLSDNQLS 461
N++ +P AG L +LQ L LS N +S
Sbjct: 164 NQISDIVPLAG-LTKLQNLYLSKNHIS 189
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 39/87 (44%), Gaps = 27/87 (31%)
Query: 375 NLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQY 434
+LP LE LYL NN I VL S LTKL+ L L+
Sbjct: 132 HLPQLESLYLGNNKITD-------------ITVL-------------SRLTKLDTLSLED 165
Query: 435 NRLQGTIPYAGHLFQLQWLDLSDNQLS 461
N++ +P AG L +LQ L LS N +S
Sbjct: 166 NQISDIVPLAG-LTKLQNLYLSKNHIS 191
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 39/87 (44%), Gaps = 27/87 (31%)
Query: 375 NLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQY 434
+LP LE LYL NN I VL S LTKL+ L L+
Sbjct: 152 HLPQLESLYLGNNKITD-------------ITVL-------------SRLTKLDTLSLED 185
Query: 435 NRLQGTIPYAGHLFQLQWLDLSDNQLS 461
N++ +P AG L +LQ L LS N +S
Sbjct: 186 NQISDIVPLAG-LTKLQNLYLSKNHIS 211
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 27/91 (29%)
Query: 371 NVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKL 430
N +LP LE LYL NN I VL S LTKL+ L
Sbjct: 123 NGLVHLPQLESLYLGNNKITD-------------ITVL-------------SRLTKLDTL 156
Query: 431 DLQYNRLQGTIPYAGHLFQLQWLDLSDNQLS 461
L+ N++ +P AG L +LQ L LS N +S
Sbjct: 157 SLEDNQISDIVPLAG-LTKLQNLYLSKNHIS 186
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 39/87 (44%), Gaps = 27/87 (31%)
Query: 375 NLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQY 434
+LP LE LYL NN I VL S LTKL+ L L+
Sbjct: 132 HLPQLESLYLGNNKI-------------TDITVL-------------SRLTKLDTLSLED 165
Query: 435 NRLQGTIPYAGHLFQLQWLDLSDNQLS 461
N++ +P AG L +LQ L LS N +S
Sbjct: 166 NQISDIVPLAG-LTKLQNLYLSKNHIS 191
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 39/87 (44%), Gaps = 27/87 (31%)
Query: 375 NLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQY 434
+LP LE LYL NN I VL S LTKL+ L L+
Sbjct: 129 HLPQLESLYLGNNKI-------------TDITVL-------------SRLTKLDTLSLED 162
Query: 435 NRLQGTIPYAGHLFQLQWLDLSDNQLS 461
N++ +P AG L +LQ L LS N +S
Sbjct: 163 NQISDIVPLAG-LTKLQNLYLSKNHIS 188
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 43/112 (38%), Gaps = 2/112 (1%)
Query: 401 SYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQL 460
Y + VL + + + L + LDL +NRL+ P L L+ L SDN L
Sbjct: 439 EYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL 498
Query: 461 SGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGE 512
+P LQ L L +NRL + P L L L N E
Sbjct: 499 ENV--DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 43/112 (38%), Gaps = 2/112 (1%)
Query: 161 SYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQL 220
Y + VL + + + L + LDL +N+L+ P L L+ L SDN L
Sbjct: 439 EYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL 498
Query: 221 SGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGE 272
+P LQ L L +NRL + P L L L N E
Sbjct: 499 ENV--DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 44/112 (39%), Gaps = 2/112 (1%)
Query: 281 SYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQL 340
Y + VL + + + L + LDL +NRL+ + L L+ L SDN L
Sbjct: 439 EYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL 498
Query: 341 SGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGE 392
N+P LQ L L +NRL + P L L L N E
Sbjct: 499 ENV--DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 43/112 (38%), Gaps = 2/112 (1%)
Query: 401 SYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQL 460
Y + VL + + + L + LDL +NRL+ P L L+ L SDN L
Sbjct: 439 EYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL 498
Query: 461 SGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGE 512
+P LQ L L +NRL + P L L L N E
Sbjct: 499 ENV--DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 43/112 (38%), Gaps = 2/112 (1%)
Query: 161 SYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQL 220
Y + VL + + + L + LDL +N+L+ P L L+ L SDN L
Sbjct: 439 EYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL 498
Query: 221 SGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGE 272
+P LQ L L +NRL + P L L L N E
Sbjct: 499 ENV--DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 44/112 (39%), Gaps = 2/112 (1%)
Query: 281 SYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQL 340
Y + VL + + + L + LDL +NRL+ + L L+ L SDN L
Sbjct: 439 EYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL 498
Query: 341 SGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGE 392
N+P LQ L L +NRL + P L L L N E
Sbjct: 499 ENV--DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 454 DLSDNQLSGSLPSFKFKMPLLQFLDLSSNR---LSTELPTNVFHNLPFLE 500
+LSDN++SG L K P L L+LS N+ LST P NL L+
Sbjct: 70 ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD 119
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 18/115 (15%)
Query: 164 RILVLQFNNFSGAIPKEI------SNLTKLEKLDLQYNKLQ---------GTIPYAGHLY 208
R + L+ N + + KE+ SN KLE L ++ +L+ +I L
Sbjct: 5 RRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLN 64
Query: 209 QLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNR---LSAELPTNVFHNLPFLE 260
+L+ L+LSDN++SG L K P L L+LS N+ LS P NL L+
Sbjct: 65 KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD 119
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 28/188 (14%)
Query: 239 LSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIP 298
++ N + ELP NLPFL +Y NN+ +P + L + +N+ +P
Sbjct: 221 VAGNNILEELPE--LQNLPFLTTIYADNNLLKT-LPDLPPSLEALNV----RDNYLTDLP 273
Query: 299 KEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSG--SLPSFKFNMPLLQF 356
+ +LT LD+ N G +L +L+ S N++ LP P L+
Sbjct: 274 ELPQSLT---FLDVSENIFSGLSELPPNLY---YLNASSNEIRSLCDLP------PSLEE 321
Query: 357 LDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGA 416
L++S+N+L +ELP P LE L S N E+P QN L + FP
Sbjct: 322 LNVSNNKL-IELPALP----PRLERLIASFNHL-AEVPELPQNLKQLHVEYNPLREFPD- 374
Query: 417 IPKEISNL 424
IP+ + +L
Sbjct: 375 IPESVEDL 382
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 106/234 (45%), Gaps = 41/234 (17%)
Query: 308 EKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLS-- 365
E+ ++ +RL+ + H L+L L LS SLP P L+ L S N L+
Sbjct: 56 EQREMAVSRLRDCLDRQAHELELNNLGLS------SLPELP---PHLESLVASCNSLTEL 106
Query: 366 VELPTNVF------HNL-------PFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNN 412
ELP ++ +NL P LE L +SNN ++P + QN S+L+I+ + N+
Sbjct: 107 PELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQL-EKLP-ELQNSSFLKIIDVDNNS 164
Query: 413 FPGAIPKEISNLT-KLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKM 471
K++ +L LE + N+L+ +P +L L + +DN LP +
Sbjct: 165 L-----KKLPDLPPSLEFIAAGNNQLE-ELPELQNLPFLTAI-YADNNSLKKLPDLPLSL 217
Query: 472 PLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRI 525
+ ++ N + ELP NLPFL +Y NN+ +P P+ L +
Sbjct: 218 ESI----VAGNNILEELPE--LQNLPFLTTIYADNNLLKT-LPDLPPSLEALNV 264
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 454 DLSDNQLSGSLPSFKFKMPLLQFLDLSSNR---LSTELPTNVFHNLPFLE 500
+LS+N++SG L K P L+ L+LS N+ LST P NL L+
Sbjct: 75 ELSENRISGDLEVLAEKCPNLKHLNLSGNKIKDLSTIEPLKKLENLKSLD 124
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 65/160 (40%), Gaps = 28/160 (17%)
Query: 209 QLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNM 268
+ ++DLS N ++ + ++ LQFL ++ + P L + NN
Sbjct: 31 HVNYVDLSLNSIAELNETSFSRLQDLQFL-----KVEQQTPG-----------LVIRNNT 74
Query: 269 FYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTIL---YVG 325
F G S L IL L +N F + L LE L L L G +L +
Sbjct: 75 FRG--------LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFK 126
Query: 326 HLLQLQWLDLSDNQLSGSLP-SFKFNMPLLQFLDLSSNRL 364
L L+ L L DN + P SF NM LDL+ N++
Sbjct: 127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 60/140 (42%), Gaps = 15/140 (10%)
Query: 113 TLSSCKRLRETSLS-LNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFN 171
+L+S L ETS S L D + ++ L + N F G I Y + L L+
Sbjct: 38 SLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG 97
Query: 172 NFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQ----LQWLDLSDNQLSGSLP-S 226
F+G L LE L L L G + +G+ ++ L+ L L DN + P S
Sbjct: 98 AFNG--------LANLEVLTLTQCNLDGAV-LSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148
Query: 227 FKFKMPLLQFLDLSSNRLSA 246
F M LDL+ N++ +
Sbjct: 149 FFLNMRRFHVLDLTFNKVKS 168
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 39/87 (44%), Gaps = 27/87 (31%)
Query: 375 NLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQY 434
+LP LE LYL NN I VL S LTKL+ L L+
Sbjct: 130 HLPQLESLYLGNNKITD-------------ITVL-------------SRLTKLDTLSLED 163
Query: 435 NRLQGTIPYAGHLFQLQWLDLSDNQLS 461
N+++ +P A L +LQ L LS N +S
Sbjct: 164 NQIRRIVPLA-RLTKLQNLYLSKNHIS 189
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 38/87 (43%), Gaps = 27/87 (31%)
Query: 375 NLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQY 434
+LP LE LYL NN I VL S LTKL+ L L+
Sbjct: 127 HLPQLESLYLGNNKITD-------------ITVL-------------SRLTKLDTLSLED 160
Query: 435 NRLQGTIPYAGHLFQLQWLDLSDNQLS 461
N++ +P A L +LQ L LS N +S
Sbjct: 161 NQISDIVPLAC-LTKLQNLYLSKNHIS 186
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,955,312
Number of Sequences: 62578
Number of extensions: 679158
Number of successful extensions: 2516
Number of sequences better than 100.0: 118
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 1184
Number of HSP's gapped (non-prelim): 572
length of query: 541
length of database: 14,973,337
effective HSP length: 104
effective length of query: 437
effective length of database: 8,465,225
effective search space: 3699303325
effective search space used: 3699303325
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)