Query 036588
Match_columns 541
No_of_seqs 264 out of 3033
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 03:31:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036588.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036588hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.8E-56 3.9E-61 484.7 35.8 532 1-540 50-590 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.3E-49 2.7E-54 431.4 32.7 492 44-540 68-566 (968)
3 KOG4194 Membrane glycoprotein 100.0 2.5E-36 5.5E-41 278.9 5.6 366 161-530 78-448 (873)
4 KOG4194 Membrane glycoprotein 100.0 6.7E-36 1.5E-40 276.1 5.8 390 22-434 53-448 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 1.3E-38 2.7E-43 281.2 -14.7 474 23-534 47-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 3.5E-35 7.6E-40 259.5 -18.7 471 20-529 67-559 (565)
7 KOG0618 Serine/threonine phosp 100.0 5.3E-33 1.1E-37 270.4 -8.3 482 23-530 23-509 (1081)
8 KOG0618 Serine/threonine phosp 100.0 4.2E-31 9E-36 257.3 -2.1 463 21-507 45-510 (1081)
9 KOG0444 Cytoskeletal regulator 99.9 7.1E-30 1.5E-34 238.5 -5.6 363 137-510 7-375 (1255)
10 KOG0444 Cytoskeletal regulator 99.9 1.7E-29 3.8E-34 235.9 -4.1 368 20-438 6-375 (1255)
11 PLN03210 Resistant to P. syrin 99.9 3.1E-22 6.8E-27 217.6 25.9 344 153-510 550-906 (1153)
12 PLN03210 Resistant to P. syrin 99.9 9.5E-22 2.1E-26 213.9 25.0 343 177-535 550-907 (1153)
13 KOG4237 Extracellular matrix p 99.8 4.3E-23 9.3E-28 183.0 -4.8 132 21-172 67-199 (498)
14 KOG4237 Extracellular matrix p 99.8 4E-21 8.7E-26 170.6 -4.7 385 137-531 67-498 (498)
15 PRK15387 E3 ubiquitin-protein 99.7 3E-16 6.5E-21 158.9 16.9 260 210-538 203-462 (788)
16 PRK15387 E3 ubiquitin-protein 99.7 1.3E-15 2.8E-20 154.3 16.1 255 22-317 202-457 (788)
17 KOG0617 Ras suppressor protein 99.6 1E-17 2.2E-22 131.8 -3.6 162 20-206 32-194 (264)
18 cd00116 LRR_RI Leucine-rich re 99.6 1.9E-17 4E-22 157.3 -2.7 202 26-244 3-233 (319)
19 PRK15370 E3 ubiquitin-protein 99.6 6E-15 1.3E-19 150.5 12.5 254 12-318 171-428 (754)
20 PRK15370 E3 ubiquitin-protein 99.6 7.9E-15 1.7E-19 149.6 12.4 247 233-510 179-428 (754)
21 cd00116 LRR_RI Leucine-rich re 99.6 1.1E-16 2.4E-21 151.9 -1.5 157 352-509 137-319 (319)
22 KOG0617 Ras suppressor protein 99.5 3E-16 6.6E-21 123.6 -5.0 157 41-221 29-186 (264)
23 KOG4658 Apoptotic ATPase [Sign 99.2 2.9E-11 6.4E-16 125.8 5.5 102 22-127 524-627 (889)
24 KOG1909 Ran GTPase-activating 99.1 2.6E-12 5.6E-17 113.5 -2.5 88 277-364 26-132 (382)
25 KOG1259 Nischarin, modulator o 99.1 1.3E-11 2.9E-16 106.7 1.8 131 398-534 281-412 (490)
26 PLN03150 hypothetical protein; 99.1 1.3E-10 2.7E-15 118.7 9.2 118 10-128 403-525 (623)
27 KOG3207 Beta-tubulin folding c 99.1 4.2E-12 9E-17 115.5 -1.6 207 278-484 118-338 (505)
28 KOG1909 Ran GTPase-activating 99.1 4.6E-12 1E-16 112.0 -2.4 184 301-484 88-310 (382)
29 KOG3207 Beta-tubulin folding c 99.1 2.2E-11 4.8E-16 110.8 1.6 208 254-462 118-340 (505)
30 KOG4658 Apoptotic ATPase [Sign 99.1 5.4E-11 1.2E-15 123.9 3.7 293 16-315 540-856 (889)
31 PF14580 LRR_9: Leucine-rich r 99.0 9.5E-11 2.1E-15 97.3 2.5 124 375-503 17-146 (175)
32 KOG1259 Nischarin, modulator o 99.0 5.1E-11 1.1E-15 103.2 0.0 183 324-512 210-414 (490)
33 KOG4341 F-box protein containi 99.0 3.7E-12 8.1E-17 115.1 -8.6 249 280-528 189-459 (483)
34 PF14580 LRR_9: Leucine-rich r 99.0 7.3E-10 1.6E-14 92.0 5.4 106 20-130 18-125 (175)
35 KOG0532 Leucine-rich repeat (L 98.9 1E-10 2.2E-15 110.1 -3.4 170 24-221 78-247 (722)
36 KOG0532 Leucine-rich repeat (L 98.8 9E-11 2E-15 110.5 -4.7 175 355-540 78-252 (722)
37 PF13855 LRR_8: Leucine rich r 98.8 3.4E-09 7.3E-14 72.1 4.2 61 21-81 1-61 (61)
38 KOG2120 SCF ubiquitin ligase, 98.8 3.9E-11 8.4E-16 103.8 -7.1 208 7-219 124-349 (419)
39 PF13855 LRR_8: Leucine rich r 98.8 4.4E-09 9.5E-14 71.6 3.8 61 472-533 1-61 (61)
40 COG4886 Leucine-rich repeat (L 98.8 8.4E-09 1.8E-13 100.8 7.1 195 309-512 97-292 (394)
41 COG4886 Leucine-rich repeat (L 98.8 7.6E-09 1.6E-13 101.1 6.2 193 25-245 97-290 (394)
42 KOG4341 F-box protein containi 98.7 1.5E-10 3.2E-15 105.0 -6.7 256 278-533 161-438 (483)
43 KOG2982 Uncharacterized conser 98.7 5.2E-09 1.1E-13 90.8 1.9 87 303-389 69-158 (418)
44 KOG2120 SCF ubiquitin ligase, 98.6 4.6E-10 1E-14 97.2 -6.2 177 233-411 186-373 (419)
45 KOG0531 Protein phosphatase 1, 98.5 1.2E-08 2.6E-13 99.7 -0.3 225 301-538 91-322 (414)
46 PLN03150 hypothetical protein; 98.5 7.8E-08 1.7E-12 98.5 5.3 112 426-538 419-532 (623)
47 KOG2982 Uncharacterized conser 98.4 5.4E-08 1.2E-12 84.7 0.2 205 161-365 45-262 (418)
48 KOG0531 Protein phosphatase 1, 98.4 4.6E-08 1E-12 95.7 -1.6 219 302-534 69-290 (414)
49 KOG1859 Leucine-rich repeat pr 98.2 7.3E-08 1.6E-12 94.0 -5.0 180 345-533 102-291 (1096)
50 KOG3665 ZYG-1-like serine/thre 98.1 4.6E-07 1E-11 92.5 -0.7 38 69-106 122-160 (699)
51 COG5238 RNA1 Ran GTPase-activa 98.1 5.8E-07 1.3E-11 77.4 -0.3 220 158-389 27-284 (388)
52 KOG1859 Leucine-rich repeat pr 98.1 1.3E-07 2.8E-12 92.3 -4.9 199 303-510 82-292 (1096)
53 COG5238 RNA1 Ran GTPase-activa 98.1 6E-07 1.3E-11 77.3 -0.6 86 279-364 28-132 (388)
54 KOG3665 ZYG-1-like serine/thre 98.0 1.1E-06 2.4E-11 89.7 -0.7 156 352-509 122-287 (699)
55 KOG1644 U2-associated snRNP A' 98.0 1.7E-05 3.7E-10 65.6 5.8 107 376-484 41-152 (233)
56 PF13306 LRR_5: Leucine rich r 97.9 6.3E-05 1.4E-09 60.4 7.6 63 250-314 5-67 (129)
57 PRK15386 type III secretion pr 97.8 0.00012 2.6E-09 69.0 9.9 135 350-507 50-187 (426)
58 KOG1644 U2-associated snRNP A' 97.8 3.3E-05 7.2E-10 63.9 5.3 103 402-506 43-149 (233)
59 PF13306 LRR_5: Leucine rich r 97.8 6.2E-05 1.3E-09 60.5 6.7 36 396-432 30-65 (129)
60 PF12799 LRR_4: Leucine Rich r 97.7 3.5E-05 7.6E-10 47.7 3.3 35 46-81 2-36 (44)
61 PF12799 LRR_4: Leucine Rich r 97.7 2.9E-05 6.3E-10 48.0 2.4 37 21-58 1-37 (44)
62 PRK15386 type III secretion pr 97.6 0.00047 1E-08 65.2 9.6 57 41-104 48-104 (426)
63 KOG1947 Leucine rich repeat pr 97.5 4.9E-06 1.1E-10 84.1 -4.1 109 280-388 187-306 (482)
64 KOG1947 Leucine rich repeat pr 97.5 7.7E-06 1.7E-10 82.7 -3.8 239 252-510 183-440 (482)
65 KOG4579 Leucine-rich repeat (L 97.5 5.5E-06 1.2E-10 63.8 -3.6 106 401-510 27-136 (177)
66 KOG4579 Leucine-rich repeat (L 97.3 5.6E-05 1.2E-09 58.4 -0.2 100 24-128 30-133 (177)
67 KOG2123 Uncharacterized conser 97.0 2.1E-05 4.5E-10 68.3 -5.8 101 400-503 18-123 (388)
68 KOG2123 Uncharacterized conser 96.8 6.7E-05 1.4E-09 65.3 -3.8 100 375-478 17-123 (388)
69 KOG2739 Leucine-rich acidic nu 96.8 0.00038 8.2E-09 60.4 0.5 104 375-480 41-151 (260)
70 KOG2739 Leucine-rich acidic nu 96.6 0.0008 1.7E-08 58.4 1.2 86 132-217 60-152 (260)
71 KOG3864 Uncharacterized conser 95.9 0.00036 7.7E-09 58.0 -4.4 82 427-508 103-187 (221)
72 PF00560 LRR_1: Leucine Rich R 95.5 0.012 2.6E-07 30.0 1.9 21 22-43 1-21 (22)
73 KOG3864 Uncharacterized conser 94.6 0.0034 7.4E-08 52.4 -2.5 82 402-483 102-187 (221)
74 PF00560 LRR_1: Leucine Rich R 94.2 0.029 6.4E-07 28.5 1.3 12 499-510 2-13 (22)
75 PF13504 LRR_7: Leucine rich r 93.5 0.038 8.2E-07 26.0 0.9 17 521-538 1-17 (17)
76 PF08263 LRRNT_2: Leucine rich 92.8 0.056 1.2E-06 33.2 1.1 17 1-17 25-43 (43)
77 KOG0473 Leucine-rich repeat pr 91.1 0.011 2.4E-07 50.5 -4.5 90 37-130 34-123 (326)
78 KOG4308 LRR-containing protein 89.4 0.002 4.4E-08 63.3 -11.9 84 330-413 89-184 (478)
79 PF13516 LRR_6: Leucine Rich r 88.9 0.12 2.6E-06 26.9 -0.1 16 45-60 2-17 (24)
80 KOG0473 Leucine-rich repeat pr 88.2 0.013 2.8E-07 50.1 -6.2 87 20-110 41-127 (326)
81 smart00369 LRR_TYP Leucine-ric 86.8 0.62 1.3E-05 24.7 2.0 12 70-81 3-14 (26)
82 smart00370 LRR Leucine-rich re 86.8 0.62 1.3E-05 24.7 2.0 12 70-81 3-14 (26)
83 KOG4308 LRR-containing protein 84.5 0.0068 1.5E-07 59.8 -11.3 88 375-462 202-304 (478)
84 smart00364 LRR_BAC Leucine-ric 73.2 2.1 4.5E-05 22.7 1.0 18 521-539 2-19 (26)
85 smart00367 LRR_CC Leucine-rich 67.8 4.2 9.1E-05 21.5 1.5 14 471-484 1-14 (26)
86 smart00368 LRR_RI Leucine rich 60.8 4.9 0.00011 21.7 1.0 13 46-58 3-15 (28)
87 smart00365 LRR_SD22 Leucine-ri 55.2 9.6 0.00021 20.3 1.5 14 45-58 2-15 (26)
88 KOG3763 mRNA export factor TAP 52.9 6.7 0.00015 38.8 1.1 64 398-462 215-284 (585)
89 KOG3763 mRNA export factor TAP 40.5 18 0.00038 36.1 1.8 13 352-364 270-282 (585)
90 KOG4242 Predicted myosin-I-bin 35.0 1.8E+02 0.004 28.8 7.4 110 208-317 354-480 (553)
91 KOG1665 AFH1-interacting prote 21.6 1.2E+02 0.0025 26.5 3.3 35 447-485 195-229 (302)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.8e-56 Score=484.72 Aligned_cols=532 Identities=39% Similarity=0.566 Sum_probs=479.6
Q ss_pred CCCCCCCccccceeeeCCCCCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhh-hcCCCcEEEeecC
Q 036588 1 NWNTSSSVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIF-NMSSLLSINFINN 79 (541)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~ 79 (541)
+|+...++|.|.|++|+. ..+++.|+++++++++.++.+|..+++|++|++++|.+.+.+|..+. ++++|++|++++|
T Consensus 50 ~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n 128 (968)
T PLN00113 50 NWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN 128 (968)
T ss_pred CCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC
Confidence 598889999999999985 56999999999999999999999999999999999999888888765 9999999999999
Q ss_pred ccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCccc-----cccccCcceEEEecCccccccCC
Q 036588 80 ALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFF-----WDHTKRNWQQLYLSKNMFYGEIP 154 (541)
Q Consensus 80 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~ 154 (541)
.+.+.+|.. .+++|++|++++|.+....|..++++++|++|+++++.+. .+...++|+.|++++|.+.+..|
T Consensus 129 ~l~~~~p~~---~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 205 (968)
T PLN00113 129 NFTGSIPRG---SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP 205 (968)
T ss_pred ccccccCcc---ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCC
Confidence 997777763 2899999999999999889999999999999999998764 34567899999999999998899
Q ss_pred ccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceeeeecc-CCCCcCCCCEEECCCCcccCCCCcccCCCCC
Q 036588 155 SDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIP-YAGHLYQLQWLDLSDNQLSGSLPSFKFKMPL 233 (541)
Q Consensus 155 ~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 233 (541)
..+..+++|+.|++++|.+....|..++.+++|++|++++|.+.+..+ .+..+++|+.|++++|.+.+..|..+..+++
T Consensus 206 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 285 (968)
T PLN00113 206 RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQK 285 (968)
T ss_pred hHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccC
Confidence 999999999999999999988899999999999999999999876544 4889999999999999998888888899999
Q ss_pred ccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEee
Q 036588 234 LQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQ 313 (541)
Q Consensus 234 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 313 (541)
|++|++++|.+.+..+.. +..+++|+.|++.+|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|+++
T Consensus 286 L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls 364 (968)
T PLN00113 286 LISLDLSDNSLSGEIPEL-VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLS 364 (968)
T ss_pred cCEEECcCCeeccCCChh-HcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECC
Confidence 999999999987666544 5889999999999999988889999999999999999999987888889999999999999
Q ss_pred CCcccccccc-ccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccC
Q 036588 314 YNRLQGTILY-VGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGE 392 (541)
Q Consensus 314 ~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 392 (541)
+|.+....+. +...++|+.+++++|.+....+..+..+++|+.|++++|.+++..+. .+..+++|+.+++++|.+.+.
T Consensus 365 ~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~ 443 (968)
T PLN00113 365 TNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS-EFTKLPLVYFLDISNNNLQGR 443 (968)
T ss_pred CCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh-hHhcCCCCCEEECcCCcccCc
Confidence 9988755443 67788999999999999888888889999999999999999865554 466899999999999999888
Q ss_pred CCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCC-CcccCCcceEeccCCcCCCCCCccccCC
Q 036588 393 IPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSGSLPSFKFKM 471 (541)
Q Consensus 393 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 471 (541)
.+..+..+++|+.|++++|.+....+..+ ..++|+.|++++|++.+..+. +..+++|+.|++++|.+...+|..+..+
T Consensus 444 ~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 522 (968)
T PLN00113 444 INSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSC 522 (968)
T ss_pred cChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCc
Confidence 88788899999999999999887666655 458999999999999876665 7789999999999999998899999999
Q ss_pred CCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeecccccccCCCC
Q 036588 472 PLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIPKE 540 (541)
Q Consensus 472 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~ 540 (541)
++|++|++++|.+.+.++ ..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|+++|.+|+.
T Consensus 523 ~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 523 KKLVSLDLSHNQLSGQIP-ASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred cCCCEEECCCCcccccCC-hhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence 999999999999988777 67889999999999999999999999999999999999999999999963
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.3e-49 Score=431.35 Aligned_cols=492 Identities=35% Similarity=0.462 Sum_probs=445.0
Q ss_pred CCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEE
Q 036588 44 LSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRET 123 (541)
Q Consensus 44 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 123 (541)
..+++.|+++++.+.+.++..+..+++|++|++++|.+.+.+|..++.++++|++|++++|.+.+..|. +.+++|++|
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L 145 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL 145 (968)
T ss_pred CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence 357999999999999889999999999999999999998899999986699999999999999866664 568999999
Q ss_pred ecCCCccc-----cccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceee
Q 036588 124 SLSLNDFF-----WDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQ 198 (541)
Q Consensus 124 ~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~ 198 (541)
+++++.+. .+..+++|++|++++|.+.+..|..+.++++|+.|++++|.+....|..++++++|+.|++++|.+.
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC
Confidence 99999775 3456789999999999998889999999999999999999998888999999999999999999887
Q ss_pred eecc-CCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCC
Q 036588 199 GTIP-YAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDT 277 (541)
Q Consensus 199 ~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 277 (541)
+..+ .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.+.+..|..+
T Consensus 226 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~ 304 (968)
T PLN00113 226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI-FSLQKLISLDLSDNSLSGEIPELV 304 (968)
T ss_pred CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhH-hhccCcCEEECcCCeeccCCChhH
Confidence 6544 48899999999999999988889899999999999999999876666554 788999999999999988899999
Q ss_pred cCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccc-cccccCCCcEEeccCccccCCCCcccCCCCcceE
Q 036588 278 ANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTIL-YVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQF 356 (541)
Q Consensus 278 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 356 (541)
..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+ .+..+++|+.+++++|.+....+..+..+++|+.
T Consensus 305 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~ 384 (968)
T PLN00113 305 IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFK 384 (968)
T ss_pred cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCE
Confidence 999999999999999988888889999999999999999875444 3788899999999999998778888888999999
Q ss_pred EEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccc
Q 036588 357 LDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNR 436 (541)
Q Consensus 357 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 436 (541)
+.+++|.+.+..+. .+..+++|+.|++.+|.+.+..+..+..+++|+.+++++|.+....+..+..+++|+.|++++|+
T Consensus 385 L~l~~n~l~~~~p~-~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 463 (968)
T PLN00113 385 LILFSNSLEGEIPK-SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463 (968)
T ss_pred EECcCCEecccCCH-HHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCce
Confidence 99999998866554 45589999999999999988888889999999999999999998888888899999999999999
Q ss_pred cccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCC
Q 036588 437 LQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSD 516 (541)
Q Consensus 437 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 516 (541)
+.+..+.....++|+.|++++|.+....+..+..+++|++|++++|.+.+.+| ..+..+++|+.|++++|.+.+.+|..
T Consensus 464 ~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~ 542 (968)
T PLN00113 464 FFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP-DELSSCKKLVSLDLSHNQLSGQIPAS 542 (968)
T ss_pred eeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCC-hHHcCccCCCEEECCCCcccccCChh
Confidence 98777776677899999999999998889899999999999999999988787 66888999999999999999999999
Q ss_pred CCCccccceEEeecccccccCCCC
Q 036588 517 TPNCSYLRILVVQFNNFSGAIPKE 540 (541)
Q Consensus 517 ~~~~~~L~~L~l~~~~~~~~~p~~ 540 (541)
+..+++|+.|++++|++++.+|+.
T Consensus 543 ~~~l~~L~~L~Ls~N~l~~~~p~~ 566 (968)
T PLN00113 543 FSEMPVLSQLDLSQNQLSGEIPKN 566 (968)
T ss_pred HhCcccCCEEECCCCcccccCChh
Confidence 999999999999999999999974
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-36 Score=278.86 Aligned_cols=366 Identities=27% Similarity=0.259 Sum_probs=302.0
Q ss_pred CCccEEEeccCcccccCCccccccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEecc
Q 036588 161 SYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLS 240 (541)
Q Consensus 161 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 240 (541)
..-+.|++++|.+....+..|.++++|+++++..|.++.++.......+|+.|++.+|.+.++-...+..++.|+.++++
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 34566888888888777777888888888888888887666666666778888888888877777777788888888888
Q ss_pred CCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccc
Q 036588 241 SNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGT 320 (541)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 320 (541)
.|.++ .++...|..-.++++|++++|.++......|..+.+|..|.+++|.++......|.++++|+.|++..|.+...
T Consensus 158 rN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 158 RNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 88874 56666666667888888888888888888888888888888888888866667777888999999988887754
Q ss_pred -cccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcC
Q 036588 321 -ILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQN 399 (541)
Q Consensus 321 -~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 399 (541)
...|..+++|+.|.+..|.+...-+..|..+.++++|+++.|.+. ......+.++++|+.|++++|.+...-+.....
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf 315 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF 315 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh-hhhcccccccchhhhhccchhhhheeecchhhh
Confidence 455888889999999988888777888889999999999999886 555655558999999999999988777777888
Q ss_pred CccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCC-CcccCCcceEeccCCcCCCCC---CccccCCCCcc
Q 036588 400 CSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSGSL---PSFKFKMPLLQ 475 (541)
Q Consensus 400 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~ 475 (541)
+++|++|+++.|.+....++.|.-+..|++|++++|.+...... +..+++|++|+++.|.+.-.+ ...+.++++|+
T Consensus 316 tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lr 395 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLR 395 (873)
T ss_pred cccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhh
Confidence 99999999999999988888999999999999999988755444 677889999999998775433 33567799999
Q ss_pred EeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeec
Q 036588 476 FLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQF 530 (541)
Q Consensus 476 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 530 (541)
.|++-||++ ..++...|.+++.|++|++.+|.+..+.+++|..+ .|++|.+..
T Consensus 396 kL~l~gNql-k~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 396 KLRLTGNQL-KSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred heeecCcee-eecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 999999999 67888999999999999999999998999999998 888887663
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=6.7e-36 Score=276.05 Aligned_cols=390 Identities=26% Similarity=0.233 Sum_probs=288.3
Q ss_pred CeEEEEecCCcceeeeCCcccCC--CCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEe
Q 036588 22 RVTALNISGLNLTVTIPSELGNL--SSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESL 99 (541)
Q Consensus 22 ~l~~L~l~~~~i~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 99 (541)
.-+.|+.++.++.......+..+ ..-+.||+++|++...-+..|.++++|+.+++..|.. +.+|..... ..+|+.|
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L-t~IP~f~~~-sghl~~L 130 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL-TRIPRFGHE-SGHLEKL 130 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchh-hhccccccc-ccceeEE
Confidence 45667777777764433334333 3345688888888877777788888888888888877 566654444 6668888
Q ss_pred eccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCc
Q 036588 100 FLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPK 179 (541)
Q Consensus 100 ~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~ 179 (541)
++..|.|.......+..++.|++ ||++.|.++.+-...|..-.++++|++++|+|++....
T Consensus 131 ~L~~N~I~sv~se~L~~l~alrs-------------------lDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~ 191 (873)
T KOG4194|consen 131 DLRHNLISSVTSEELSALPALRS-------------------LDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETG 191 (873)
T ss_pred eeeccccccccHHHHHhHhhhhh-------------------hhhhhchhhcccCCCCCCCCCceEEeeccccccccccc
Confidence 88888777666666666666666 66666666666556666667788888888888777777
Q ss_pred cccccCCCcEEEccCceeeeeccC-CCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCC
Q 036588 180 EISNLTKLEKLDLQYNKLQGTIPY-AGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPF 258 (541)
Q Consensus 180 ~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 258 (541)
.|..+.+|..|.+++|.++..+.. ++++++|+.|++..|.+...-.-.|..+++|+.+.+..|.+. .+.+++|..+.+
T Consensus 192 ~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~k 270 (873)
T KOG4194|consen 192 HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEK 270 (873)
T ss_pred cccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecc
Confidence 777778888888888877766554 666888888888877776443445667788888888888773 667777788888
Q ss_pred CcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCcccccccc-ccccCCCcEEeccC
Q 036588 259 LEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILY-VGHLLQLQWLDLSD 337 (541)
Q Consensus 259 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~ 337 (541)
+++|+++.|++......++.+++.|+.|+++.|.+..........+++|+.|++++|.+...... +..+..|++|+++.
T Consensus 271 me~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~ 350 (873)
T KOG4194|consen 271 MEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSH 350 (873)
T ss_pred cceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccc
Confidence 88888888887777777778888888888888888777777777888888888888887765554 66777888888888
Q ss_pred ccccCCCCcccCCCCcceEEEcccCcCcCcC--ChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCC
Q 036588 338 NQLSGSLPSFKFNMPLLQFLDLSSNRLSVEL--PTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPG 415 (541)
Q Consensus 338 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 415 (541)
|.+.......|..+++|++|+++.|.+++.+ ....|..+++|..|.+.+|++......+|.++++|++|++.+|.+-.
T Consensus 351 Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 351 NSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIAS 430 (873)
T ss_pred cchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCccee
Confidence 8887776777777888888888888775433 34567778888888888888776666778888888888888888877
Q ss_pred ccchhhhccCCCcEEEccc
Q 036588 416 AIPKEISNLTKLEKLDLQY 434 (541)
Q Consensus 416 ~~~~~l~~~~~L~~L~l~~ 434 (541)
+.+.+|..+ .|++|.+..
T Consensus 431 Iq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 431 IQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred ecccccccc-hhhhhhhcc
Confidence 777888877 777776644
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.3e-38 Score=281.19 Aligned_cols=474 Identities=29% Similarity=0.357 Sum_probs=368.5
Q ss_pred eEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeecc
Q 036588 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLK 102 (541)
Q Consensus 23 l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 102 (541)
+..++++++++. .+.+.+.++..|.+|++..+++. .+|.+++.+..++.++.+.|++ ..+|..+.. +++|..++.+
T Consensus 47 l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~l-s~lp~~i~s-~~~l~~l~~s 122 (565)
T KOG0472|consen 47 LQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKL-SELPEQIGS-LISLVKLDCS 122 (565)
T ss_pred hhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchH-hhccHHHhh-hhhhhhhhcc
Confidence 567788888888 56666888888888888888887 8888888888888888888887 578888877 8888888888
Q ss_pred ccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCcccc
Q 036588 103 SNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEIS 182 (541)
Q Consensus 103 ~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~ 182 (541)
.+++. ..+..++++-.++. ++...|++. ..|.++..+.++..+++.++.+. ..|...-
T Consensus 123 ~n~~~-el~~~i~~~~~l~d-------------------l~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i 180 (565)
T KOG0472|consen 123 SNELK-ELPDSIGRLLDLED-------------------LDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHI 180 (565)
T ss_pred cccee-ecCchHHHHhhhhh-------------------hhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHH
Confidence 88777 67777777777666 444455555 45677888888888888888887 4444444
Q ss_pred ccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEE
Q 036588 183 NLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEEL 262 (541)
Q Consensus 183 ~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 262 (541)
.++.|++|+...|.+...++.++.+.+|..|++.+|++. ..| .|..+..|++++++.|.+ +.++.+..++++.+..|
T Consensus 181 ~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i-~~lpae~~~~L~~l~vL 257 (565)
T KOG0472|consen 181 AMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQI-EMLPAEHLKHLNSLLVL 257 (565)
T ss_pred HHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHH-HhhHHHHhcccccceee
Confidence 488888888888888878888888888988888888886 555 577888999999999887 46777887899999999
Q ss_pred EecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccC---CCcEE------
Q 036588 263 YLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLL---QLQWL------ 333 (541)
Q Consensus 263 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~---~L~~L------ 333 (541)
++..+++. ..|+.+.-+.+|++|++++|.++ ..|..++++ +|++|.+.+|++......+-..+ -|++|
T Consensus 258 DLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~ 334 (565)
T KOG0472|consen 258 DLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKD 334 (565)
T ss_pred eccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhcc
Confidence 99999887 77888888899999999999988 667778888 99999999998764322211111 11111
Q ss_pred -eccCcccc--------CCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCC--CccEEEccCcccccCCCcCCcCCcc
Q 036588 334 -DLSDNQLS--------GSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLP--FLEELYLSNNMFYGEIPSDTQNCSY 402 (541)
Q Consensus 334 -~l~~~~~~--------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~ 402 (541)
.++..... ...........+.+.|++++-+++ .+|...|+.-. -.+.+++++|++. .+|..+..+..
T Consensus 335 dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lke 412 (565)
T KOG0472|consen 335 DGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKE 412 (565)
T ss_pred CCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHH
Confidence 11111110 011112234567788999988887 78888886544 3889999999986 66777776666
Q ss_pred CCeE-EcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCC
Q 036588 403 LRIL-VLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSS 481 (541)
Q Consensus 403 L~~L-~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 481 (541)
+.+. .++++.++ ..+..++.+++|..|++++|.+-+....++.+..|+.++++.|.+. .+|..+.....++++-.++
T Consensus 413 lvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~ 490 (565)
T KOG0472|consen 413 LVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASN 490 (565)
T ss_pred HHHHHHhhcCccc-cchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcc
Confidence 5544 45555554 7888899999999999999988766666888889999999999887 7777777777788888888
Q ss_pred CccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeeccccc
Q 036588 482 NRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFS 534 (541)
Q Consensus 482 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 534 (541)
+++ +.++...+.++.+|..||+.+|.+. .+|..+.++.+|++|++.+|++.
T Consensus 491 nqi-~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 491 NQI-GSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccc-cccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 888 7788778999999999999999998 88999999999999999999997
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=3.5e-35 Score=259.47 Aligned_cols=471 Identities=28% Similarity=0.346 Sum_probs=342.2
Q ss_pred CCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEe
Q 036588 20 TYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESL 99 (541)
Q Consensus 20 ~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 99 (541)
...+.++++++++.. .+|.+++.+..++.++.+++++. .+|.++..+..|+.++.+.|.. ..+|.++++ +..|..+
T Consensus 67 L~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~-~el~~~i~~-~~~l~dl 142 (565)
T KOG0472|consen 67 LACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNEL-KELPDSIGR-LLDLEDL 142 (565)
T ss_pred ccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccce-eecCchHHH-Hhhhhhh
Confidence 557899999999999 78999999999999999999998 9999999999999999999988 689999999 9999999
Q ss_pred eccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCc
Q 036588 100 FLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPK 179 (541)
Q Consensus 100 ~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~ 179 (541)
+..+|++. ..|..+..+.++.. +++.++.+....+..+ .++.|++|+...|.+. .+|.
T Consensus 143 ~~~~N~i~-slp~~~~~~~~l~~-------------------l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-tlP~ 200 (565)
T KOG0472|consen 143 DATNNQIS-SLPEDMVNLSKLSK-------------------LDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE-TLPP 200 (565)
T ss_pred hccccccc-cCchHHHHHHHHHH-------------------hhccccchhhCCHHHH-HHHHHHhcccchhhhh-cCCh
Confidence 99999988 67778877777766 4555555554433333 3788888888777665 6777
Q ss_pred cccccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCc-ccCCCCCccEEeccCCcccCcCChhhhccCCC
Q 036588 180 EISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPS-FKFKMPLLQFLDLSSNRLSAELPTNVFHNLPF 258 (541)
Q Consensus 180 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 258 (541)
.++.+.+|..|++..|.+. ..+.+..+..|+++.++.|.+. .+|. ....++++.+|+++.|.+. +.|.++ .-+.+
T Consensus 201 ~lg~l~~L~~LyL~~Nki~-~lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~-clLrs 276 (565)
T KOG0472|consen 201 ELGGLESLELLYLRRNKIR-FLPEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEI-CLLRS 276 (565)
T ss_pred hhcchhhhHHHHhhhcccc-cCCCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHH-HHhhh
Confidence 8888888888888888776 4447777888888888777776 4443 3446788888888888774 566655 56677
Q ss_pred CcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccc------cCCccE----EEeeCCcc---------cc
Q 036588 259 LEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISN------LTKLEK----LDLQYNRL---------QG 319 (541)
Q Consensus 259 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~------l~~L~~----L~l~~~~~---------~~ 319 (541)
|+.|+++++.++ ..|..++++ +|++|.+.||.+... .+.+-+ ++.|+. =.++...- ..
T Consensus 277 L~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTi-Rr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~ 353 (565)
T KOG0472|consen 277 LERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTI-RREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSE 353 (565)
T ss_pred hhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHH-HHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCC
Confidence 888888888776 677788888 788888888865311 111100 111111 00111110 01
Q ss_pred ccccccccCCCcEEeccCccccCCCCcccCCCC--cceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCC
Q 036588 320 TILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMP--LLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDT 397 (541)
Q Consensus 320 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 397 (541)
..+......+.++|++++-.++......|.... -...++++.|++. ++|.....--..++.+.++++.+. ..+..+
T Consensus 354 ~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l 431 (565)
T KOG0472|consen 354 SFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLEL 431 (565)
T ss_pred cccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHH
Confidence 122245566788888888888755555554332 3677889999886 677654422233456667776664 666677
Q ss_pred cCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEe
Q 036588 398 QNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFL 477 (541)
Q Consensus 398 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 477 (541)
..+++|..|++++|.+. ..|..+..+..|+.++++.|++.........+..++.+-.+.+++....++.+.+|.+|.+|
T Consensus 432 ~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tL 510 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTL 510 (565)
T ss_pred Hhhhcceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhccee
Confidence 88999999999998777 45667777888999999999887444445555667777777788887777778999999999
Q ss_pred eCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEee
Q 036588 478 DLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQ 529 (541)
Q Consensus 478 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 529 (541)
++.+|.+ ..+| ..+++|.+|++|+++||++. ..+..+-.-+....|..-
T Consensus 511 DL~nNdl-q~IP-p~LgnmtnL~hLeL~gNpfr-~Pr~~iLmkgT~aiL~yl 559 (565)
T KOG0472|consen 511 DLQNNDL-QQIP-PILGNMTNLRHLELDGNPFR-QPRHQILMKGTAAILSYL 559 (565)
T ss_pred ccCCCch-hhCC-hhhccccceeEEEecCCccC-CCHHHHhccChHHHHHHh
Confidence 9999999 5577 57899999999999999998 433334333444444333
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=5.3e-33 Score=270.41 Aligned_cols=482 Identities=29% Similarity=0.324 Sum_probs=237.0
Q ss_pred eEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeecc
Q 036588 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLK 102 (541)
Q Consensus 23 l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 102 (541)
+..|+++.+-+....-+.+.+.-+|+.|||+++.+. .+|..+..+.+|+.|+++.|.+ ...|..... +.+|+++.|.
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i-~~vp~s~~~-~~~l~~lnL~ 99 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI-RSVPSSCSN-MRNLQYLNLK 99 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH-hhCchhhhh-hhcchhheec
Confidence 344444444444222333344444555555555554 5555555555555555555555 344544444 5555555555
Q ss_pred ccccCccCCccCCCCCCCcEEecCCCcccccc----ccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCC
Q 036588 103 SNMFHGKIPSTLSSCKRLRETSLSLNDFFWDH----TKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIP 178 (541)
Q Consensus 103 ~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 178 (541)
+++.. ..|..+..+++|++++++.+.+...+ .+..++.+..++|..... ++... ++.+++..+.+.+.++
T Consensus 100 ~n~l~-~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~ 173 (1081)
T KOG0618|consen 100 NNRLQ-SLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFL 173 (1081)
T ss_pred cchhh-cCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccchh
Confidence 55444 55555555555555555555544222 122333333444311111 11111 4444444444444444
Q ss_pred ccccccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCC
Q 036588 179 KEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPF 258 (541)
Q Consensus 179 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 258 (541)
.++..++. .|++..|.+. ...+..+++|+.+....+.+... --.-++++.|..+.|.+..... .....+
T Consensus 174 ~~i~~l~~--~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~---~p~p~n 242 (1081)
T KOG0618|consen 174 IDIYNLTH--QLDLRYNEME--VLDLSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDV---HPVPLN 242 (1081)
T ss_pred cchhhhhe--eeecccchhh--hhhhhhccchhhhhhhhcccceE----EecCcchheeeeccCcceeecc---cccccc
Confidence 44444444 4555555443 22344445555555544443311 1123455555555554431110 112234
Q ss_pred CcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCc
Q 036588 259 LEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDN 338 (541)
Q Consensus 259 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 338 (541)
++.++++.+++. ..|.|+..+.+|+.+....|.+. ..+..+....+|+++.+..|.+....+.......|++|++..|
T Consensus 243 l~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 243 LQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred ceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhc
Confidence 555555555554 33355555555555555555553 3333344445555555555555544444444555555555555
Q ss_pred cccCCCCcccCCCCc-ceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCcc
Q 036588 339 QLSGSLPSFKFNMPL-LQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAI 417 (541)
Q Consensus 339 ~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 417 (541)
.+.+..+.++..... |+.+..+.+.+. ..+...-...+.|+.|.+.+|.+++.....+.++++|+.|++++|++....
T Consensus 321 ~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fp 399 (1081)
T KOG0618|consen 321 NLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFP 399 (1081)
T ss_pred cccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCC
Confidence 554333322222222 444444444443 222211123455666666666666555556666666666666666666555
Q ss_pred chhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCc
Q 036588 418 PKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLP 497 (541)
Q Consensus 418 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 497 (541)
...+.++..|++|+++||++.........++.|++|...+|.+. ..| .+..++.|+.+|++.|++......+.. ..+
T Consensus 400 as~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~-p~p 476 (1081)
T KOG0618|consen 400 ASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL-PSP 476 (1081)
T ss_pred HHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC-CCc
Confidence 55566666666666666666655444566666666666666665 455 455666666666666665332211211 125
Q ss_pred ccceeeeccceecccCCCCCCCccccceEEeec
Q 036588 498 FLEELYLSNNMFYGEIPSDTPNCSYLRILVVQF 530 (541)
Q Consensus 498 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 530 (541)
.|+.||++||.....-...|..+.++...++.-
T Consensus 477 ~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~ 509 (1081)
T KOG0618|consen 477 NLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITL 509 (1081)
T ss_pred ccceeeccCCcccccchhhhHHhhhhhheeccc
Confidence 666666666665433333444455555544443
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=4.2e-31 Score=257.31 Aligned_cols=463 Identities=30% Similarity=0.323 Sum_probs=326.6
Q ss_pred CCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEee
Q 036588 21 YRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLF 100 (541)
Q Consensus 21 ~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 100 (541)
-+|.+|+++++.+. ..|..+..+++|+.|+++.|.+. ..|.+..++.+|+++.|.+|.. ..+|.++.+ +.+|++|+
T Consensus 45 v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l-~~lP~~~~~-lknl~~Ld 120 (1081)
T KOG0618|consen 45 VKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRL-QSLPASISE-LKNLQYLD 120 (1081)
T ss_pred eeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchh-hcCchhHHh-hhcccccc
Confidence 35999999999999 78999999999999999999998 8999999999999999999988 789999999 99999999
Q ss_pred ccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCcc
Q 036588 101 LKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKE 180 (541)
Q Consensus 101 l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 180 (541)
++.|.+. ..|..+..++.++.+.+++|..........++.+++..+.+.+.++..+..+.+ .|++..|.+.. -.
T Consensus 121 lS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~---~d 194 (1081)
T KOG0618|consen 121 LSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV---LD 194 (1081)
T ss_pred cchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhh---hh
Confidence 9999998 788888899999999999883322222233777888887777766666665555 58888887652 24
Q ss_pred ccccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCc
Q 036588 181 ISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLE 260 (541)
Q Consensus 181 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 260 (541)
+..+.+|+.+....+.+.... ...++++.|..++|.+....+. ....+|++++++.+.+. .+| +....+++|+
T Consensus 195 ls~~~~l~~l~c~rn~ls~l~---~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp-~wi~~~~nle 267 (1081)
T KOG0618|consen 195 LSNLANLEVLHCERNQLSELE---ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLP-EWIGACANLE 267 (1081)
T ss_pred hhhccchhhhhhhhcccceEE---ecCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cch-HHHHhcccce
Confidence 455566666666665544222 2245667777777766533222 23456777777777763 455 4446777777
Q ss_pred EEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCcccccccc-ccccC-CCcEEeccCc
Q 036588 261 ELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILY-VGHLL-QLQWLDLSDN 338 (541)
Q Consensus 261 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~-~L~~L~l~~~ 338 (541)
.+....|.+. ..|..+....+|+++.+..|.+. ..+.....+++|+.|++..|.+...... +.... .++.++.+.+
T Consensus 268 ~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n 345 (1081)
T KOG0618|consen 268 ALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSN 345 (1081)
T ss_pred EecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhc
Confidence 7777777764 55666666677777777777766 4455566677777777777776644433 12222 2555565655
Q ss_pred cccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccc
Q 036588 339 QLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIP 418 (541)
Q Consensus 339 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 418 (541)
.+.......-...+.|+.|.+.+|.+++. -...+.++++|+.|++++|++.......+.+++.|++|++++|++. ..+
T Consensus 346 ~l~~lp~~~e~~~~~Lq~LylanN~Ltd~-c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp 423 (1081)
T KOG0618|consen 346 KLSTLPSYEENNHAALQELYLANNHLTDS-CFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLP 423 (1081)
T ss_pred cccccccccchhhHHHHHHHHhcCccccc-chhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhh
Confidence 55433333334567788888888887733 3344567888888888888876444456778888888888888887 455
Q ss_pred hhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCC-CCccccCCCCccEeeCCCCccccccCcccccCCc
Q 036588 419 KEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGS-LPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLP 497 (541)
Q Consensus 419 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 497 (541)
..+.+|+.|++|...+|.+. ..|.+..++.|+.+|++.|.+... ++.... .|+|++|+++||.- ..+..+.+..+.
T Consensus 424 ~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~-l~~d~~~l~~l~ 500 (1081)
T KOG0618|consen 424 DTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTR-LVFDHKTLKVLK 500 (1081)
T ss_pred HHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCcc-cccchhhhHHhh
Confidence 77888888888888888877 445777888888888888887763 333322 37888888888875 223334555555
Q ss_pred ccceeeeccc
Q 036588 498 FLEELYLSNN 507 (541)
Q Consensus 498 ~L~~L~l~~~ 507 (541)
++..+++.-+
T Consensus 501 ~l~~~~i~~~ 510 (1081)
T KOG0618|consen 501 SLSQMDITLN 510 (1081)
T ss_pred hhhheecccC
Confidence 6555555544
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=7.1e-30 Score=238.48 Aligned_cols=363 Identities=31% Similarity=0.363 Sum_probs=273.4
Q ss_pred CcceEEEecCcccc-ccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceeeeeccCCCCcCCCCEEEC
Q 036588 137 RNWQQLYLSKNMFY-GEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDL 215 (541)
Q Consensus 137 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 215 (541)
+..+-.++++|.++ +..|.....+..++-|.+....+. .+|+.++.+..|+.|.+..|++......+..+|.|+.+.+
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIV 85 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhh
Confidence 44566889999888 567888899999999999998877 7899999999999999999999888888999999999999
Q ss_pred CCCcccC-CCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccC
Q 036588 216 SDNQLSG-SLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFS 294 (541)
Q Consensus 216 ~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 294 (541)
.+|++.. .+|..+..+..|+.|+++.|.+. ..|... ...+++-.|+++.|++..+....|.+++.|-.|++++|.+.
T Consensus 86 R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~L-E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNL-EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred hccccccCCCCchhcccccceeeecchhhhh-hcchhh-hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh
Confidence 9988764 47777888999999999999884 566554 67788899999999988776667778888999999999876
Q ss_pred CCccccccccCCccEEEeeCCccccccc-cccccCCCcEEeccCcccc-CCCCcccCCCCcceEEEcccCcCcCcCChhh
Q 036588 295 GAIPKEISNLTKLEKLDLQYNRLQGTIL-YVGHLLQLQWLDLSDNQLS-GSLPSFKFNMPLLQFLDLSSNRLSVELPTNV 372 (541)
Q Consensus 295 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 372 (541)
..|..+..+..|+.|.+++|++...-. .+..+.+|++|.++++.-+ ..++..+-.+.+|..++++.|.+. .+|+..
T Consensus 164 -~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecl 241 (1255)
T KOG0444|consen 164 -MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECL 241 (1255)
T ss_pred -hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHH
Confidence 666678888899999999998764432 2666777888888877533 356666677788888888888775 566655
Q ss_pred hcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccc--cccCCCcccCCc
Q 036588 373 FHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQ--GTIPYAGHLFQL 450 (541)
Q Consensus 373 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L 450 (541)
+ .+++|..|++++|+++ .+........+|++|+++.|+++ ..|.++.++++|+.|.+.+|++. ++...++.+.+|
T Consensus 242 y-~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L 318 (1255)
T KOG0444|consen 242 Y-KLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL 318 (1255)
T ss_pred h-hhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh
Confidence 5 7788888888888776 44445556677788888888777 66777777777777777777654 233335566666
Q ss_pred ceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceec
Q 036588 451 QWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFY 510 (541)
Q Consensus 451 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 510 (541)
+++...+|.+. ..|+.++.|+.|+.|.++.|.+.+ +| +.+.-++.|+.|+++.|+..
T Consensus 319 evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiT-LP-eaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 319 EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLIT-LP-EAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred HHHHhhccccc-cCchhhhhhHHHHHhcccccceee-ch-hhhhhcCCcceeeccCCcCc
Confidence 66666665554 556666666666666666666544 44 44555666666666666655
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=1.7e-29 Score=235.92 Aligned_cols=368 Identities=26% Similarity=0.332 Sum_probs=243.9
Q ss_pred CCCeEEEEecCCcce-eeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcE
Q 036588 20 TYRVTALNISGLNLT-VTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLES 98 (541)
Q Consensus 20 ~~~l~~L~l~~~~i~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 98 (541)
.+.+|-.|++++.++ +..|.....++.++.|.|...++. .+|..+..+.+|++|.++.|++ .++...+.. +|+|+.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L-~~vhGELs~-Lp~LRs 82 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQL-ISVHGELSD-LPRLRS 82 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhh-Hhhhhhhcc-chhhHH
Confidence 568899999999998 679999999999999999999998 8999999999999999999987 355566666 999999
Q ss_pred eeccccccCc-cCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccC
Q 036588 99 LFLKSNMFHG-KIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAI 177 (541)
Q Consensus 99 L~l~~~~~~~-~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 177 (541)
+.+..|++.. .+|..+.++..|.. |+++.|++. ..|..+.+.+++-.|++++|.|...-
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~-------------------lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIP 142 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTI-------------------LDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIP 142 (1255)
T ss_pred HhhhccccccCCCCchhccccccee-------------------eecchhhhh-hcchhhhhhcCcEEEEcccCccccCC
Confidence 9999888874 57778888887777 455555555 56777888888889999998888544
Q ss_pred CccccccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCC
Q 036588 178 PKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLP 257 (541)
Q Consensus 178 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 257 (541)
..-+.+++.|-.|++++|.+...++....+.+|++|.+++|.+.......+..+.+|.+|.+++..-+-
T Consensus 143 n~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl----------- 211 (1255)
T KOG0444|consen 143 NSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL----------- 211 (1255)
T ss_pred chHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh-----------
Confidence 445678888888899888888777778888888888888887653333334445555555555543211
Q ss_pred CCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccC
Q 036588 258 FLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSD 337 (541)
Q Consensus 258 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 337 (541)
...|..+..+.+|..++++.|.+. ..|+.+.++++|++|++++|.++........-.+|++|+++.
T Consensus 212 -------------~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSr 277 (1255)
T KOG0444|consen 212 -------------DNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSR 277 (1255)
T ss_pred -------------hcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhcccc
Confidence 123344444555555555555544 455555555666666666665554444444445555555555
Q ss_pred ccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCcc
Q 036588 338 NQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAI 417 (541)
Q Consensus 338 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 417 (541)
|+++ .++..+..+++|+.|.+.+|.++.+-.......+..|+.+...+|.+. ..|+.+..|..|+.|.++.|++- ..
T Consensus 278 NQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TL 354 (1255)
T KOG0444|consen 278 NQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TL 354 (1255)
T ss_pred chhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-ec
Confidence 5555 444555555555555555555442222222234555555555555543 44555555555555555555544 34
Q ss_pred chhhhccCCCcEEEccccccc
Q 036588 418 PKEISNLTKLEKLDLQYNRLQ 438 (541)
Q Consensus 418 ~~~l~~~~~L~~L~l~~~~~~ 438 (541)
|++++-++.|+.|++..|.-.
T Consensus 355 PeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 355 PEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhhhhhcCCcceeeccCCcCc
Confidence 555555555555655555544
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=3.1e-22 Score=217.62 Aligned_cols=344 Identities=23% Similarity=0.211 Sum_probs=245.6
Q ss_pred CCccccCCCCccEEEeccCcc------cccCCcccccc-CCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCC
Q 036588 153 IPSDIANCSYLRILVLQFNNF------SGAIPKEISNL-TKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLP 225 (541)
Q Consensus 153 ~~~~~~~~~~L~~L~l~~~~i------~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 225 (541)
.+..|..+++|+.|.+..+.. ....|..+..+ ..|+.|.+.++.+...+..+ .+.+|+.|++.++.+. .++
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~-~L~ 627 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE-KLW 627 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc-ccc
Confidence 345678889999998865432 22355566655 46899999888777665555 5688999999988876 455
Q ss_pred cccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccC
Q 036588 226 SFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLT 305 (541)
Q Consensus 226 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 305 (541)
..+..+++|+.++++++.....++. +..+++|+.|++.+|......|..+..+++|+.|++++|.....+|..+ +++
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~ 704 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK 704 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence 6667788999999988754445553 5678899999999887666788888888999999999876554555544 688
Q ss_pred CccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcC------cCChhhhcCCCCc
Q 036588 306 KLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSV------ELPTNVFHNLPFL 379 (541)
Q Consensus 306 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~~~~~L 379 (541)
+|+.|++++|......+. ...+|+.|+++++.+.. ++..+ .+++|++|.+.++.... ......+..+++|
T Consensus 705 sL~~L~Lsgc~~L~~~p~--~~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL 780 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPD--ISTNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL 780 (1153)
T ss_pred CCCEEeCCCCCCcccccc--ccCCcCeeecCCCcccc-ccccc-cccccccccccccchhhccccccccchhhhhccccc
Confidence 899999988865433332 24578888888887763 33332 56778888776643210 1111122245788
Q ss_pred cEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCc
Q 036588 380 EELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQ 459 (541)
Q Consensus 380 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 459 (541)
+.|++++|+....+|..+..+++|+.|++++|......|... .+++|+.|++++|......+. ...+|+.|+++++.
T Consensus 781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~--~~~nL~~L~Ls~n~ 857 (1153)
T PLN03210 781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD--ISTNISDLNLSRTG 857 (1153)
T ss_pred hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc--cccccCEeECCCCC
Confidence 889998887766777788888899999998886544455444 678888999988865433332 24678888888888
Q ss_pred CCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceec
Q 036588 460 LSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFY 510 (541)
Q Consensus 460 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 510 (541)
+. .+|..+..+++|++|++++|+....++ ..+..+++|+.+++++|...
T Consensus 858 i~-~iP~si~~l~~L~~L~L~~C~~L~~l~-~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 858 IE-EVPWWIEKFSNLSFLDMNGCNNLQRVS-LNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred Cc-cChHHHhcCCCCCEEECCCCCCcCccC-cccccccCCCeeecCCCccc
Confidence 87 677778888889999998887767676 34567788888888888744
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=9.5e-22 Score=213.90 Aligned_cols=343 Identities=24% Similarity=0.199 Sum_probs=263.7
Q ss_pred CCccccccCCCcEEEccCceee------e-eccCCCCc-CCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcC
Q 036588 177 IPKEISNLTKLEKLDLQYNKLQ------G-TIPYAGHL-YQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAEL 248 (541)
Q Consensus 177 ~~~~l~~l~~L~~L~l~~~~~~------~-~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 248 (541)
....|..+++|+.|.+..+... . .+..+..+ ++|+.|.+.++.+. .+|..+ ...+|+.|++.++.+. .+
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L 626 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KL 626 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cc
Confidence 3456788999999998654321 1 22234443 56999999998876 556555 5689999999999874 45
Q ss_pred ChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccC
Q 036588 249 PTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLL 328 (541)
Q Consensus 249 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 328 (541)
+..+ ..+++|+.++++++......| .+..+++|+.|++++|......+..+..+++|+.|++++|......+....++
T Consensus 627 ~~~~-~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~ 704 (1153)
T PLN03210 627 WDGV-HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLK 704 (1153)
T ss_pred cccc-ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCC
Confidence 5443 788999999999876444555 47889999999999987766788889999999999999986554555444789
Q ss_pred CCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccC-------CCcCCcCCc
Q 036588 329 QLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGE-------IPSDTQNCS 401 (541)
Q Consensus 329 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-------~~~~~~~~~ 401 (541)
+|+.|++++|.....++. ..++|+.|.++++.+. .++... .+++|..|.+.++..... .+..+..++
T Consensus 705 sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCEEeCCCCCCcccccc---ccCCcCeeecCCCccc-cccccc--cccccccccccccchhhccccccccchhhhhccc
Confidence 999999999975544432 3468999999999875 555543 578898888877543211 111233457
Q ss_pred cCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCC
Q 036588 402 YLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSS 481 (541)
Q Consensus 402 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 481 (541)
+|+.|++++|......|..+.++++|+.|++++|......|....+++|+.|++++|.....+|.. .++|+.|++++
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~ 855 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---STNISDLNLSR 855 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---ccccCEeECCC
Confidence 999999999987777888999999999999999976656666557899999999999765455543 46899999999
Q ss_pred CccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeecccccc
Q 036588 482 NRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSG 535 (541)
Q Consensus 482 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 535 (541)
|.+ ..+| ..+..+++|+.|++.+|+....++..+..+++|+.+++.+|.-..
T Consensus 856 n~i-~~iP-~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 856 TGI-EEVP-WWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred CCC-ccCh-HHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 998 5577 567889999999999999887888889999999999999996554
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.84 E-value=4.3e-23 Score=182.97 Aligned_cols=132 Identities=23% Similarity=0.267 Sum_probs=109.4
Q ss_pred CCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeec-CccCCCCChhhhhhcCCCcEe
Q 036588 21 YRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFIN-NALFGELPPNFCNHLSNLESL 99 (541)
Q Consensus 21 ~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L 99 (541)
.....|.|..|+|+.+.+++|+.+++||.|||+.|.++.+.|.+|.++++|..|.+.+ |+| +.+|...++++.+|+-|
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI-~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI-TDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch-hhhhhhHhhhHHHHHHH
Confidence 3678899999999999999999999999999999999988999999999999998888 666 89999999999999999
Q ss_pred eccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCc
Q 036588 100 FLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNN 172 (541)
Q Consensus 100 ~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 172 (541)
.+.-+++.......|..++++.. |.+..+.+..+-...|..+..++.+.+..+.
T Consensus 146 llNan~i~Cir~~al~dL~~l~l-------------------LslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSL-------------------LSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcch-------------------hcccchhhhhhccccccchhccchHhhhcCc
Confidence 99999998777778888888877 4444555544333456666666666666554
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.78 E-value=4e-21 Score=170.59 Aligned_cols=385 Identities=23% Similarity=0.183 Sum_probs=218.7
Q ss_pred CcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEccC-ceeeeeccC-CCCcCCCCEEE
Q 036588 137 RNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQY-NKLQGTIPY-AGHLYQLQWLD 214 (541)
Q Consensus 137 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~-~~~~~~L~~L~ 214 (541)
+.-..+++..|+|..+.+..|+.+++|+.|+++.|.|..+.|.+|..+.+|.+|-+.+ |.+++.... ++.+..++.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 4455678888888877778888888888888888888888888888888887776666 777766655 67777788777
Q ss_pred CCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccc------------cCCCCCcCccc
Q 036588 215 LSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYG------------EIPSDTANCSY 282 (541)
Q Consensus 215 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------------~~~~~~~~~~~ 282 (541)
+.-+.+.-...+.+..++++..|.+..+.+ ..+....|..+..++.+.+..+.+.. ..+..+++..-
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhh-hhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 777776656666777778888888877776 35555566777777777776654211 11111222111
Q ss_pred ccEEEecccccCCCcccccc-ccCCccEEEeeCCccccccc--cccccCCCcEEeccCccccCCCCcccCCCCcceEEEc
Q 036588 283 LRILVLRFNNFSGAIPKEIS-NLTKLEKLDLQYNRLQGTIL--YVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDL 359 (541)
Q Consensus 283 L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 359 (541)
.....+.+..+.......+. ....+.+-..+.+......+ .|..+++|+.+++++|.++.+.+.+|.....+++|.+
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 11111222222111111110 01111111112222221222 2666677777777777766666666666677777777
Q ss_pred ccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCC-----ccchhhh--------cc--
Q 036588 360 SSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPG-----AIPKEIS--------NL-- 424 (541)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~l~--------~~-- 424 (541)
.+|.+. .+...+|.++..|+.|++.+|+++...+..|....+|.+|.+-.|++.= ...+++. .|
T Consensus 306 ~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~ 384 (498)
T KOG4237|consen 306 TRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQS 384 (498)
T ss_pred CcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCC
Confidence 777664 5566666677777777777777766666666666677777665544320 0011111 11
Q ss_pred -CCCcEEEccccccccc---cCC----------CcccCCcceE-eccCCcCCCCCCccccCCCCccEeeCCCCccccccC
Q 036588 425 -TKLEKLDLQYNRLQGT---IPY----------AGHLFQLQWL-DLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELP 489 (541)
Q Consensus 425 -~~L~~L~l~~~~~~~~---~~~----------~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 489 (541)
..++.+.++...+... .+. -..++.+..+ ..+..... .+|..+ ...-.++.+.+|.+ ..+|
T Consensus 385 p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~i--P~d~telyl~gn~~-~~vp 460 (498)
T KOG4237|consen 385 PGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGI--PVDVTELYLDGNAI-TSVP 460 (498)
T ss_pred CchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCC--CchhHHHhcccchh-cccC
Confidence 1233333433322110 000 0111112111 11111111 222211 12345677888887 5577
Q ss_pred cccccCCcccceeeeccceecccCCCCCCCccccceEEeecc
Q 036588 490 TNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFN 531 (541)
Q Consensus 490 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 531 (541)
.+ .+.+| .+++++|++..-....|.++..|.+|-|++|
T Consensus 461 ~~---~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 461 DE---LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred HH---HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 54 45677 8889999988556667888888888888764
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.70 E-value=3e-16 Score=158.88 Aligned_cols=260 Identities=29% Similarity=0.257 Sum_probs=119.3
Q ss_pred CCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEec
Q 036588 210 LQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLR 289 (541)
Q Consensus 210 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 289 (541)
-..|+++.+.+. .+|..+. ++|+.|.+.+|.+. .+|. ..++|+.|++++|+++. +|.. .++|+.|++.
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls 270 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIF 270 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCc-ccCc---ccccceeecc
Confidence 455666666665 3444332 35666666666653 2332 23556666666665552 2221 2455556665
Q ss_pred ccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCC
Q 036588 290 FNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELP 369 (541)
Q Consensus 290 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 369 (541)
+|.+.. ++. ..++|+.|++++|.+..... ..++|+.|++++|.+.. ++.. ..+|+.|.+++|.++ .++
T Consensus 271 ~N~L~~-Lp~---lp~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP 338 (788)
T PRK15387 271 SNPLTH-LPA---LPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLP 338 (788)
T ss_pred CCchhh-hhh---chhhcCEEECcCCccccccc---cccccceeECCCCcccc-CCCC---cccccccccccCccc-ccc
Confidence 555442 221 12345555555555442211 12345555555554442 1111 123444444444443 222
Q ss_pred hhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCC
Q 036588 370 TNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQ 449 (541)
Q Consensus 370 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 449 (541)
. -. .+|+.|++++|++... |.. .++|+.|++++|++... +. ...+
T Consensus 339 ~----lp------------------------~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~~L-P~--l~~~ 383 (788)
T PRK15387 339 T----LP------------------------SGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLTSL-PA--LPSG 383 (788)
T ss_pred c----cc------------------------cccceEecCCCccCCC-CCC---CcccceehhhccccccC-cc--cccc
Confidence 1 11 2445555555544421 111 13444455555544421 11 1234
Q ss_pred cceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEee
Q 036588 450 LQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQ 529 (541)
Q Consensus 450 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 529 (541)
|+.|++++|.+. .+|.. .++|+.|++++|.+. .+|. . ..+|+.|++++|.+. .+|+.+..+++|+.|+++
T Consensus 384 L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~-l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 384 LKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPM-L---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 453 (788)
T ss_pred cceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCc-c---hhhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence 555555555554 22221 234555555555552 2441 1 234555555555555 455555555555556666
Q ss_pred cccccccCC
Q 036588 530 FNNFSGAIP 538 (541)
Q Consensus 530 ~~~~~~~~p 538 (541)
+|++++.+|
T Consensus 454 ~N~Ls~~~~ 462 (788)
T PRK15387 454 GNPLSERTL 462 (788)
T ss_pred CCCCCchHH
Confidence 555555443
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.67 E-value=1.3e-15 Score=154.29 Aligned_cols=255 Identities=27% Similarity=0.263 Sum_probs=125.3
Q ss_pred CeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeec
Q 036588 22 RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFL 101 (541)
Q Consensus 22 ~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 101 (541)
.-..|++++++++ .+|..+. ++|+.|++.+|.++ .+|.. .++|++|++++|.+ +.+|.. .++|+.|++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~L-tsLP~l----p~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQL-TSLPVL----PPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCcc-CcccCc----ccccceeec
Confidence 3456788888888 5676664 47888888888887 56643 57888888888877 355542 567888888
Q ss_pred cccccCccCCccCCCCCCCcEEecCCCcccccc-ccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCcc
Q 036588 102 KSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDH-TKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKE 180 (541)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 180 (541)
++|.+. .+|..+ .+|+.|++++|.+.... .+++|+.|++++|.+... +.. ..+|+.|.+.+|.+. .+|..
T Consensus 270 s~N~L~-~Lp~lp---~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~-~LP~l 340 (788)
T PRK15387 270 FSNPLT-HLPALP---SGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLT-SLPTL 340 (788)
T ss_pred cCCchh-hhhhch---hhcCEEECcCCccccccccccccceeECCCCccccC-CCC---cccccccccccCccc-ccccc
Confidence 887776 333322 34555555555544222 123455555555544432 211 123444444444443 22211
Q ss_pred ccccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCc
Q 036588 181 ISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLE 260 (541)
Q Consensus 181 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 260 (541)
..+|+.|++++|.+...+.. .++|+.|++++|.+. .+|.. ..+|+.|++++|.+. .++. ..++|+
T Consensus 341 ---p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~----l~s~L~ 405 (788)
T PRK15387 341 ---PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPV----LPSELK 405 (788)
T ss_pred ---ccccceEecCCCccCCCCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCccc-CCCC----cccCCC
Confidence 12444555555444432211 233444444444443 22221 133444444444442 1221 113444
Q ss_pred EEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCcc
Q 036588 261 ELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRL 317 (541)
Q Consensus 261 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 317 (541)
.|++++|.+.. +|.. ..+|+.|++++|.+. .+|..+..+++|+.+++++|.+
T Consensus 406 ~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 406 ELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred EEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCC
Confidence 44444444432 2211 123444444444443 2333344444444444444443
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=1e-17 Score=131.83 Aligned_cols=162 Identities=32% Similarity=0.457 Sum_probs=113.4
Q ss_pred CCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEe
Q 036588 20 TYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESL 99 (541)
Q Consensus 20 ~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 99 (541)
..+++.|.+++++++ ..|..++.+.+|++|++++|+++ .+|.++..+++|+.|+++-|+. ..+|.+|+. +|.|++|
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl-~~lprgfgs-~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL-NILPRGFGS-FPALEVL 107 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh-hcCccccCC-Cchhhhh
Confidence 446667777777777 45555777777777777777776 7777777777777777776666 466777776 7777777
Q ss_pred eccccccCc-cCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCC
Q 036588 100 FLKSNMFHG-KIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIP 178 (541)
Q Consensus 100 ~l~~~~~~~-~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 178 (541)
|++.+.+.. .+|..|..++.|+.+.+ +.+.++ .+|..++++++|+.|.+..+.+. ..|
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl-------------------~dndfe-~lp~dvg~lt~lqil~lrdndll-~lp 166 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYL-------------------GDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLP 166 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHh-------------------cCCCcc-cCChhhhhhcceeEEeeccCchh-hCc
Confidence 777666552 45666666666666444 344443 56777888888888888887766 677
Q ss_pred ccccccCCCcEEEccCceeeeeccCCCC
Q 036588 179 KEISNLTKLEKLDLQYNKLQGTIPYAGH 206 (541)
Q Consensus 179 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 206 (541)
..++.++.|++|.+.++.++..++.++.
T Consensus 167 keig~lt~lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 167 KEIGDLTRLRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred HHHHHHHHHHHHhcccceeeecChhhhh
Confidence 8888888888888888887766665543
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.62 E-value=1.9e-17 Score=157.28 Aligned_cols=202 Identities=24% Similarity=0.239 Sum_probs=93.0
Q ss_pred EEecCCcce-eeeCCcccCCCCCcEecccccccCCc----cchhhhhcCCCcEEEeecCccCC------CCChhhhhhcC
Q 036588 26 LNISGLNLT-VTIPSELGNLSSLQTLDLSFNWFSGS----IPASIFNMSSLLSINFINNALFG------ELPPNFCNHLS 94 (541)
Q Consensus 26 L~l~~~~i~-~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~------~~~~~~~~~l~ 94 (541)
|+|..+.++ ......|..+++|+.|+++++.++.. ++..+...+.|+++++.++.+.. .++..+.. ++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~-~~ 81 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK-GC 81 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh-cC
Confidence 455555555 23344455666677777777766422 34444555667777776665421 11122223 55
Q ss_pred CCcEeeccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccc----cCCccccCC-CCccEEEec
Q 036588 95 NLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYG----EIPSDIANC-SYLRILVLQ 169 (541)
Q Consensus 95 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~-~~L~~L~l~ 169 (541)
+|+.|+++++.+....+..+..+.+ . ++|++|++++|.+.+ .+...+..+ ++|+.|++.
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~---------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~ 145 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLR---------------S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLG 145 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhc---------------c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcC
Confidence 6666666666655333333322222 0 123334444443331 111223344 566666666
Q ss_pred cCcccc----cCCccccccCCCcEEEccCceeeee-----ccCCCCcCCCCEEECCCCcccCC----CCcccCCCCCccE
Q 036588 170 FNNFSG----AIPKEISNLTKLEKLDLQYNKLQGT-----IPYAGHLYQLQWLDLSDNQLSGS----LPSFKFKMPLLQF 236 (541)
Q Consensus 170 ~~~i~~----~~~~~l~~l~~L~~L~l~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~ 236 (541)
+|.+.. .+...+..++.|++|++++|.+.+. ...+...++|+.|++++|.+.+. +...+..+++|++
T Consensus 146 ~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~ 225 (319)
T cd00116 146 RNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEV 225 (319)
T ss_pred CCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCE
Confidence 665542 1222334445555665555554421 11122334555555555544321 1122333444555
Q ss_pred EeccCCcc
Q 036588 237 LDLSSNRL 244 (541)
Q Consensus 237 L~l~~~~~ 244 (541)
|++++|.+
T Consensus 226 L~ls~n~l 233 (319)
T cd00116 226 LNLGDNNL 233 (319)
T ss_pred EecCCCcC
Confidence 55555444
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.60 E-value=6e-15 Score=150.48 Aligned_cols=254 Identities=24% Similarity=0.366 Sum_probs=153.2
Q ss_pred ceeeeCCCCCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhh
Q 036588 12 TGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCN 91 (541)
Q Consensus 12 ~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 91 (541)
....|.. .+..+|++++++++ .+|..+. ++|+.|++++|.++ .+|..+. .+|++|++++|.+ +.+|..+
T Consensus 171 r~~~Cl~--~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~L-tsLP~~l-- 239 (754)
T PRK15370 171 RMRDCLK--NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQL-TSIPATL-- 239 (754)
T ss_pred HHHhhcc--cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCcc-ccCChhh--
Confidence 3345653 36789999999999 4676553 57999999999998 7777664 5899999999987 5778765
Q ss_pred hcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccC
Q 036588 92 HLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFN 171 (541)
Q Consensus 92 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 171 (541)
.++|+.|++++|.+. .+|..+. .+|+.|+++++ ++.. +|..+. ++|+.|++++|
T Consensus 240 -~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N-------------------~L~~-LP~~l~--~sL~~L~Ls~N 293 (754)
T PRK15370 240 -PDTIQEMELSINRIT-ELPERLP--SALQSLDLFHN-------------------KISC-LPENLP--EELRYLSVYDN 293 (754)
T ss_pred -hccccEEECcCCccC-cCChhHh--CCCCEEECcCC-------------------ccCc-cccccC--CCCcEEECCCC
Confidence 457999999999887 5555443 35666555544 4442 232221 35666666666
Q ss_pred cccccCCccccccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChh
Q 036588 172 NFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTN 251 (541)
Q Consensus 172 ~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 251 (541)
.+. .+|..+. ++|+.|++++|.+...+..+ .++|+.|++++|.+.. +|..+ .++|+.|++++|.+. .+|..
T Consensus 294 ~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~ 364 (754)
T PRK15370 294 SIR-TLPAHLP--SGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPET 364 (754)
T ss_pred ccc-cCcccch--hhHHHHHhcCCccccCCccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChh
Confidence 554 2333222 35566666666555332222 2456666666666552 33322 256666666666653 34433
Q ss_pred hhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCcccc----ccccCCccEEEeeCCccc
Q 036588 252 VFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKE----ISNLTKLEKLDLQYNRLQ 318 (541)
Q Consensus 252 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~~ 318 (541)
+ .++|+.|++++|.+. ..|..+. +.|+.|++++|.+. .+|.. ...++++..+++.+|.+.
T Consensus 365 l---p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 365 L---PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred h---cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 2 246666777666665 2333322 34666677776665 33322 233466677777777654
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.59 E-value=7.9e-15 Score=149.62 Aligned_cols=247 Identities=23% Similarity=0.306 Sum_probs=125.3
Q ss_pred CccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEe
Q 036588 233 LLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDL 312 (541)
Q Consensus 233 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 312 (541)
+.+.|.+++..+. .+|..+ .+.++.|++.+|.++ .+|..+. ++|+.|++++|.+. .++..+. ++|+.|++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACI---PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred CceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 4566777666553 344322 245777777777665 3333332 46777777777665 3333332 35677777
Q ss_pred eCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccC
Q 036588 313 QYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGE 392 (541)
Q Consensus 313 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 392 (541)
++|.+......+ ..+|+.|++++|.+.. ++..+ .++|+.|++++|.++ .++... .++|+.|++.+|.+. .
T Consensus 249 s~N~L~~LP~~l--~s~L~~L~Ls~N~L~~-LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l---p~sL~~L~Ls~N~Lt-~ 318 (754)
T PRK15370 249 SINRITELPERL--PSALQSLDLFHNKISC-LPENL--PEELRYLSVYDNSIR-TLPAHL---PSGITHLNVQSNSLT-A 318 (754)
T ss_pred cCCccCcCChhH--hCCCCEEECcCCccCc-ccccc--CCCCcEEECCCCccc-cCcccc---hhhHHHHHhcCCccc-c
Confidence 777665332222 2356666666666552 23222 245666666666654 333321 134666666666554 2
Q ss_pred CCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCC
Q 036588 393 IPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMP 472 (541)
Q Consensus 393 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 472 (541)
++..+ .++|+.|++++|.++. .|..+. ++|+.|++++|++......+ .++|+.|++++|.+. .+|..+. +
T Consensus 319 LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~ 388 (754)
T PRK15370 319 LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRNALT-NLPENLP--A 388 (754)
T ss_pred CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCC-CCCHhHH--H
Confidence 22211 2456666666665553 233332 45666666666554221111 245666666666555 2333222 2
Q ss_pred CccEeeCCCCccccccCcc---cccCCcccceeeeccceec
Q 036588 473 LLQFLDLSSNRLSTELPTN---VFHNLPFLEELYLSNNMFY 510 (541)
Q Consensus 473 ~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~ 510 (541)
.|+.|++++|++. .+|.. ....++.+..+++.+|++.
T Consensus 389 sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 389 ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 4566666666552 33321 1122355556666666654
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.58 E-value=1.1e-16 Score=151.92 Aligned_cols=157 Identities=27% Similarity=0.282 Sum_probs=85.3
Q ss_pred CcceEEEcccCcCcCcCC---hhhhcCCCCccEEEccCcccccC----CCcCCcCCccCCeEEcccCCCCCcc----chh
Q 036588 352 PLLQFLDLSSNRLSVELP---TNVFHNLPFLEELYLSNNMFYGE----IPSDTQNCSYLRILVLKFNNFPGAI----PKE 420 (541)
Q Consensus 352 ~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~ 420 (541)
++|+.+++++|.+++... ...+..+++|++|++.+|.+.+. +...+..+++|+.|++++|.+.... ...
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 445555555554432111 12233445566666666555421 1122334456677777666655322 223
Q ss_pred hhccCCCcEEEccccccccccCC--Cc----ccCCcceEeccCCcCCC----CCCccccCCCCccEeeCCCCccccc---
Q 036588 421 ISNLTKLEKLDLQYNRLQGTIPY--AG----HLFQLQWLDLSDNQLSG----SLPSFKFKMPLLQFLDLSSNRLSTE--- 487 (541)
Q Consensus 421 l~~~~~L~~L~l~~~~~~~~~~~--~~----~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~--- 487 (541)
+..+++|+.|++++|.+.+.... .. ..+.|+.|++++|.+++ .+...+..+++|+++++++|.+...
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~ 296 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ 296 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH
Confidence 44566777777777766531111 11 23678888888887753 2233455667888888888888533
Q ss_pred -cCcccccCC-cccceeeecccee
Q 036588 488 -LPTNVFHNL-PFLEELYLSNNMF 509 (541)
Q Consensus 488 -~~~~~~~~~-~~L~~L~l~~~~~ 509 (541)
+. ..+... +.|+.+++.++++
T Consensus 297 ~~~-~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 297 LLA-ESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHH-HHHhhcCCchhhcccCCCCC
Confidence 22 223333 6788888877763
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.50 E-value=3e-16 Score=123.56 Aligned_cols=157 Identities=29% Similarity=0.435 Sum_probs=122.2
Q ss_pred ccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCC
Q 036588 41 LGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRL 120 (541)
Q Consensus 41 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 120 (541)
+-++.+++.|.++.|+++ .+|..+..+.+|+.|++.+|++ ..+|.++.. +++|++|++..+++. ..|..|+.++.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqi-e~lp~~iss-l~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQI-EELPTSISS-LPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchh-hhcChhhhh-chhhhheecchhhhh-cCccccCCCchh
Confidence 456677888899999998 8888899999999999999998 688888888 999999999888776 778888887777
Q ss_pred cEEecCCCccccccccCcceEEEecCcccc-ccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceeee
Q 036588 121 RETSLSLNDFFWDHTKRNWQQLYLSKNMFY-GEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQG 199 (541)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~ 199 (541)
+.+++.+ +.+. ..+|..|-.+..|+.|.+..+.+. .+|..++++++|+.|.+..+.+..
T Consensus 105 evldlty-------------------nnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~ 164 (264)
T KOG0617|consen 105 EVLDLTY-------------------NNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS 164 (264)
T ss_pred hhhhccc-------------------cccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhh
Confidence 7744443 3322 345666777777777888777766 677778888888888887777776
Q ss_pred eccCCCCcCCCCEEECCCCccc
Q 036588 200 TIPYAGHLYQLQWLDLSDNQLS 221 (541)
Q Consensus 200 ~~~~~~~~~~L~~L~l~~~~~~ 221 (541)
.+..++.+..|+.|.+.+++++
T Consensus 165 lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 165 LPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred CcHHHHHHHHHHHHhcccceee
Confidence 6666777777777777777766
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.15 E-value=2.9e-11 Score=125.81 Aligned_cols=102 Identities=21% Similarity=0.226 Sum_probs=52.5
Q ss_pred CeEEEEecCCcceeeeCCcccCCCCCcEecccccc--cCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEe
Q 036588 22 RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNW--FSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESL 99 (541)
Q Consensus 22 ~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 99 (541)
.+|...+.++.+. ..+.+.. +++|++|-+..+. +....+..|..++.|++|++++|.-.+.+|..+++ +-+||+|
T Consensus 524 ~~rr~s~~~~~~~-~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~-Li~LryL 600 (889)
T KOG4658|consen 524 SVRRMSLMNNKIE-HIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE-LVHLRYL 600 (889)
T ss_pred heeEEEEeccchh-hccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh-hhhhhcc
Confidence 4455555555544 2232222 2245555555553 22122222445666666666655555566666665 6666666
Q ss_pred eccccccCccCCccCCCCCCCcEEecCC
Q 036588 100 FLKSNMFHGKIPSTLSSCKRLRETSLSL 127 (541)
Q Consensus 100 ~l~~~~~~~~~~~~~~~l~~L~~l~~~~ 127 (541)
+++++.+. .+|..+.+++.|.+|++..
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~ 627 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEV 627 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheecccc
Confidence 66666555 5566666666666654443
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.14 E-value=2.6e-12 Score=113.52 Aligned_cols=88 Identities=24% Similarity=0.121 Sum_probs=45.4
Q ss_pred CcCcccccEEEecccccCCC----ccccccccCCccEEEeeCCccccc-----------cccccccCCCcEEeccCcccc
Q 036588 277 TANCSYLRILVLRFNNFSGA----IPKEISNLTKLEKLDLQYNRLQGT-----------ILYVGHLLQLQWLDLSDNQLS 341 (541)
Q Consensus 277 ~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~-----------~~~~~~~~~L~~L~l~~~~~~ 341 (541)
+.....++++++++|.+... +...+.+.++|+..++++...... ...+..+|.|+++++++|-+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 34456677788887765422 334455666777777665432211 111344556666666665443
Q ss_pred CCC----CcccCCCCcceEEEcccCcC
Q 036588 342 GSL----PSFKFNMPLLQFLDLSSNRL 364 (541)
Q Consensus 342 ~~~----~~~~~~~~~L~~L~l~~~~~ 364 (541)
... ...+.++..|++|.+.+|.+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Gl 132 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGL 132 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCC
Confidence 211 12223455555555555544
No 25
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.14 E-value=1.3e-11 Score=106.67 Aligned_cols=131 Identities=27% Similarity=0.266 Sum_probs=75.8
Q ss_pred cCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEe
Q 036588 398 QNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFL 477 (541)
Q Consensus 398 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 477 (541)
...+.|+++|+++|.++. ..+.+.-.|.++.|+++.|.+.. +..+..+++|..|++++|.+. .+..+-.++.+.++|
T Consensus 281 dTWq~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~-v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRT-VQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL 357 (490)
T ss_pred chHhhhhhccccccchhh-hhhhhhhccceeEEeccccceee-ehhhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence 334556666666665552 33344445666666666666552 233555666666666666555 333444456666777
Q ss_pred eCCCCccccccCcccccCCcccceeeeccceeccc-CCCCCCCccccceEEeeccccc
Q 036588 478 DLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGE-IPSDTPNCSYLRILVVQFNNFS 534 (541)
Q Consensus 478 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~ 534 (541)
.+++|.+ +.+ ..+..+.+|..||+++|+|... -..++.++|.|+.+.+.+|++.
T Consensus 358 ~La~N~i-E~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 358 KLAQNKI-ETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred ehhhhhH-hhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 7777666 223 2455566677777777766522 2235666777777777777765
No 26
>PLN03150 hypothetical protein; Provisional
Probab=99.14 E-value=1.3e-10 Score=118.68 Aligned_cols=118 Identities=26% Similarity=0.495 Sum_probs=102.5
Q ss_pred ccceeeeCCC--C--CCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCC
Q 036588 10 NWTGITCDVR--T--YRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGEL 85 (541)
Q Consensus 10 ~~~~~~~~~~--~--~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 85 (541)
.|.|+.|... . ..++.|+|+++.+++.+|..++++++|+.|+|++|.+.+.+|..+..+++|++|++++|.+.+.+
T Consensus 403 ~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i 482 (623)
T PLN03150 403 PWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482 (623)
T ss_pred ccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC
Confidence 7999999531 1 25999999999999999999999999999999999999999999999999999999999998899
Q ss_pred ChhhhhhcCCCcEeeccccccCccCCccCCCC-CCCcEEecCCC
Q 036588 86 PPNFCNHLSNLESLFLKSNMFHGKIPSTLSSC-KRLRETSLSLN 128 (541)
Q Consensus 86 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~l~~~~~ 128 (541)
|..+.. +++|++|++++|.+...+|..+... .++..+++.++
T Consensus 483 P~~l~~-L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 483 PESLGQ-LTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred chHHhc-CCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence 998887 9999999999999998888887653 34455444433
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=4.2e-12 Score=115.46 Aligned_cols=207 Identities=24% Similarity=0.218 Sum_probs=129.5
Q ss_pred cCcccccEEEecccccCCCcc-ccccccCCccEEEeeCCcccccccc---ccccCCCcEEeccCccccCCCCcc-cCCCC
Q 036588 278 ANCSYLRILVLRFNNFSGAIP-KEISNLTKLEKLDLQYNRLQGTILY---VGHLLQLQWLDLSDNQLSGSLPSF-KFNMP 352 (541)
Q Consensus 278 ~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~ 352 (541)
.++.+|+.+.+.++.+..... .....|++++.|+++.|-+...... ...+|+|+.|+++.|.+....... -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 356788999999887763322 4677899999999999876544332 577889999999988776322211 12467
Q ss_pred cceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCcc-chhhhccCCCcEEE
Q 036588 353 LLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAI-PKEISNLTKLEKLD 431 (541)
Q Consensus 353 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~ 431 (541)
.|+.|.++.|+++......+...+|+|+.|.+..|...........-++.|++|++++|.+.+.. ......++.|..|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 88888888888875555556667888888888877522222233445667777788777665422 12345567777777
Q ss_pred ccccccccccCC-------CcccCCcceEeccCCcCCC-CCCccccCCCCccEeeCCCCcc
Q 036588 432 LQYNRLQGTIPY-------AGHLFQLQWLDLSDNQLSG-SLPSFKFKMPLLQFLDLSSNRL 484 (541)
Q Consensus 432 l~~~~~~~~~~~-------~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~ 484 (541)
++.|.+....-. ...+++|+.|++..|++.+ .....+..+++|+.|.+..+.+
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 777766532111 1345666666666666542 1122344455555555555554
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.11 E-value=4.6e-12 Score=111.96 Aligned_cols=184 Identities=27% Similarity=0.319 Sum_probs=96.0
Q ss_pred ccccCCccEEEeeCCcccccccc-----ccccCCCcEEeccCccccCCCC-------------cccCCCCcceEEEcccC
Q 036588 301 ISNLTKLEKLDLQYNRLQGTILY-----VGHLLQLQWLDLSDNQLSGSLP-------------SFKFNMPLLQFLDLSSN 362 (541)
Q Consensus 301 l~~l~~L~~L~l~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~-------------~~~~~~~~L~~L~l~~~ 362 (541)
+..+++|+.+++|+|.+...... +.++..|++|++.+|.+..... ....+.+.|+.+....|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 33445555555555544322211 3445555555555555432111 12234567777777777
Q ss_pred cCcCc---CChhhhcCCCCccEEEccCcccccC----CCcCCcCCccCCeEEcccCCCCC----ccchhhhccCCCcEEE
Q 036588 363 RLSVE---LPTNVFHNLPFLEELYLSNNMFYGE----IPSDTQNCSYLRILVLKFNNFPG----AIPKEISNLTKLEKLD 431 (541)
Q Consensus 363 ~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~ 431 (541)
..... .....|+..+.|+.+.+..|.+... +...+..|++|+.|++++|.++. .....++.+++|++++
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 65321 1234566667777777777765422 22345667777777777776553 2233445566666666
Q ss_pred ccccccccccCC------CcccCCcceEeccCCcCCC----CCCccccCCCCccEeeCCCCcc
Q 036588 432 LQYNRLQGTIPY------AGHLFQLQWLDLSDNQLSG----SLPSFKFKMPLLQFLDLSSNRL 484 (541)
Q Consensus 432 l~~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~ 484 (541)
+++|-+...... -...|.|+++.+.+|.++. .+.......|.|+.|++++|.+
T Consensus 248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 666655432211 1235566666666665543 1122233455666666666655
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=2.2e-11 Score=110.81 Aligned_cols=208 Identities=26% Similarity=0.210 Sum_probs=152.3
Q ss_pred ccCCCCcEEEecCccccccCC-CCCcCcccccEEEecccccCCC--ccccccccCCccEEEeeCCcccccccc--ccccC
Q 036588 254 HNLPFLEELYLSNNMFYGEIP-SDTANCSYLRILVLRFNNFSGA--IPKEISNLTKLEKLDLQYNRLQGTILY--VGHLL 328 (541)
Q Consensus 254 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~ 328 (541)
+++.+|+++.+.++.+..... .....|++++.|++++|-+... .......+|+|+.|+++.|.+...... -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 567789999999988763322 3567899999999999877643 345667899999999999987644333 34678
Q ss_pred CCcEEeccCccccC-CCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCC-CcCCcCCccCCeE
Q 036588 329 QLQWLDLSDNQLSG-SLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEI-PSDTQNCSYLRIL 406 (541)
Q Consensus 329 ~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L 406 (541)
+++.|.++.|.++. .+......+|+|+.|.+.+|... .+......-+..|+.|++++|++.... ......+|.|+.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 99999999998873 33344567899999999998521 233333445788999999999875322 1345678999999
Q ss_pred EcccCCCCCcc-chh-----hhccCCCcEEEcccccccc--ccCCCcccCCcceEeccCCcCCC
Q 036588 407 VLKFNNFPGAI-PKE-----ISNLTKLEKLDLQYNRLQG--TIPYAGHLFQLQWLDLSDNQLSG 462 (541)
Q Consensus 407 ~l~~~~~~~~~-~~~-----l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~ 462 (541)
.++.|.+..+. +.. ...+++|+.|++..|++.. ....+..+++|+.|.+.++.+..
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 99999876532 222 3567999999999999853 33346778888888888887754
No 30
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.08 E-value=5.4e-11 Score=123.88 Aligned_cols=293 Identities=20% Similarity=0.182 Sum_probs=165.9
Q ss_pred eCCCCCCeEEEEecCCc--ceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhc
Q 036588 16 CDVRTYRVTALNISGLN--LTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHL 93 (541)
Q Consensus 16 ~~~~~~~l~~L~l~~~~--i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l 93 (541)
+....+.+++|-+..+. +.....+.|..++.|++||+++|.--+.+|..++++-+||||++.++.+ ..+|.++.+ +
T Consensus 540 ~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I-~~LP~~l~~-L 617 (889)
T KOG4658|consen 540 GSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI-SHLPSGLGN-L 617 (889)
T ss_pred CCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc-cccchHHHH-H
Confidence 33334468888877775 4434445578888888888888765558888888888888888888887 588888888 8
Q ss_pred CCCcEeeccccccCccCCccCCCCCCCcEEecCCCccc-------cccccCcceEEEecCccccccCCccccCCCCcc--
Q 036588 94 SNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFF-------WDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLR-- 164 (541)
Q Consensus 94 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~-------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-- 164 (541)
..|.+|++..+......+.....+.+|+++.+...... ....+++|+.+....... .+...+..++.|.
T Consensus 618 k~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~ 695 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSL 695 (889)
T ss_pred HhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHH
Confidence 88888888877665556667777888888888665422 333445555555543332 1111222333332
Q ss_pred --EEEeccCcccccCCccccccCCCcEEEccCceeeeecc-C-----CC-CcCCCCEEECCCCcccCCCCcccCCCCCcc
Q 036588 165 --ILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIP-Y-----AG-HLYQLQWLDLSDNQLSGSLPSFKFKMPLLQ 235 (541)
Q Consensus 165 --~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~-----~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 235 (541)
.+.+.++.. ...+..+..+.+|+.|.+.++...+... . .. .++++..+.+.++... -.+.+....++|+
T Consensus 696 ~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~ 773 (889)
T KOG4658|consen 696 LQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLT 773 (889)
T ss_pred hHhhhhccccc-ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCccc
Confidence 233222222 2444556777888888888776643211 1 11 1344555555555433 3334445568888
Q ss_pred EEeccCCcccCcCChhhhccCCCCcEEEecCcccccc-CCCCCcCcccccEEEecccccCCCc---cccccccCCccEEE
Q 036588 236 FLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGE-IPSDTANCSYLRILVLRFNNFSGAI---PKEISNLTKLEKLD 311 (541)
Q Consensus 236 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~---~~~l~~l~~L~~L~ 311 (541)
.+.+..+...+... .....+..++.+.+..+.+... .....+.++++..+.+..-...+.. ...+..+|.+..+.
T Consensus 774 ~l~l~~~~~~e~~i-~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~ 852 (889)
T KOG4658|consen 774 SLSLVSCRLLEDII-PKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLT 852 (889)
T ss_pred EEEEecccccccCC-CHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccc
Confidence 88888876533222 2223334444433433333322 2233344444444444332221111 12245566666666
Q ss_pred eeCC
Q 036588 312 LQYN 315 (541)
Q Consensus 312 l~~~ 315 (541)
+.+|
T Consensus 853 i~~~ 856 (889)
T KOG4658|consen 853 IVGC 856 (889)
T ss_pred eecc
Confidence 6665
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.03 E-value=9.5e-11 Score=97.25 Aligned_cols=124 Identities=28% Similarity=0.273 Sum_probs=33.4
Q ss_pred CCCCccEEEccCcccccCCCcCCc-CCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCC-cccCCcce
Q 036588 375 NLPFLEELYLSNNMFYGEIPSDTQ-NCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA-GHLFQLQW 452 (541)
Q Consensus 375 ~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~ 452 (541)
++.++++|++.++.+... +.+. .+.+|+.|++++|.+... +.+..+++|++|++++|++......+ ..+++|++
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 344566666666666421 2233 355666666666666532 24555666666666666655432222 24556666
Q ss_pred EeccCCcCCCC-CCccccCCCCccEeeCCCCccccccCc---ccccCCcccceee
Q 036588 453 LDLSDNQLSGS-LPSFKFKMPLLQFLDLSSNRLSTELPT---NVFHNLPFLEELY 503 (541)
Q Consensus 453 L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~ 503 (541)
|++++|.+.+. ....+..+|+|+.|++.+|++... +. ..+..+|+|+.||
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEET
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeC
Confidence 66666655431 123344556666666666655332 11 1234455555554
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.01 E-value=5.1e-11 Score=103.16 Aligned_cols=183 Identities=27% Similarity=0.299 Sum_probs=138.0
Q ss_pred ccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcC---cCChh-------------------hhcCCCCccE
Q 036588 324 VGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSV---ELPTN-------------------VFHNLPFLEE 381 (541)
Q Consensus 324 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~-------------------~~~~~~~L~~ 381 (541)
+.-+.+|+++.++.|.-.. +......-|.|.++.+.+..+.. -.|+. ....+..|++
T Consensus 210 l~~f~~l~~~~~s~~~~~~-i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Lte 288 (490)
T KOG1259|consen 210 LNAFRNLKTLKFSALSTEN-IVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTE 288 (490)
T ss_pred hHHhhhhheeeeeccchhh-eeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhh
Confidence 5567889999999887553 22333345788888777654321 01111 1113456899
Q ss_pred EEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCC
Q 036588 382 LYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLS 461 (541)
Q Consensus 382 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 461 (541)
+++++|.+. .+.+...-.|.++.|+++.|.+... +.+..+++|..|++++|.+......-..+-+.+.|.+.+|.+.
T Consensus 289 lDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE 365 (490)
T KOG1259|consen 289 LDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIE 365 (490)
T ss_pred ccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHh
Confidence 999999886 5666778889999999999998744 3488899999999999998765555566788999999999875
Q ss_pred CCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceeccc
Q 036588 462 GSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGE 512 (541)
Q Consensus 462 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 512 (541)
+ .+.++++-+|..|++++|++...-....++++|.|+.+.+.+||+...
T Consensus 366 ~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 366 T--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred h--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 3 345778889999999999986554556789999999999999999843
No 33
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.97 E-value=3.7e-12 Score=115.12 Aligned_cols=249 Identities=20% Similarity=0.109 Sum_probs=124.3
Q ss_pred cccccEEEecccc-cCCCccc-cccccCCccEEEeeCCccccc---cccccccCCCcEEeccCccccC--CCCcccCCCC
Q 036588 280 CSYLRILVLRFNN-FSGAIPK-EISNLTKLEKLDLQYNRLQGT---ILYVGHLLQLQWLDLSDNQLSG--SLPSFKFNMP 352 (541)
Q Consensus 280 ~~~L~~L~l~~~~-~~~~~~~-~l~~l~~L~~L~l~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~ 352 (541)
|++|+++++..|. +++.... ....|++|+++++++|..... ......+..++.+...+|.-.. .+......++
T Consensus 189 C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~ 268 (483)
T KOG4341|consen 189 CRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCL 268 (483)
T ss_pred cchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccCh
Confidence 4445555554432 2222222 223455666666655543211 1113334444444444443211 1111222344
Q ss_pred cceEEEcccCc-CcCcCChhhhcCCCCccEEEccCcccccC--CCcCCcCCccCCeEEcccCC-CCCccchhhh-ccCCC
Q 036588 353 LLQFLDLSSNR-LSVELPTNVFHNLPFLEELYLSNNMFYGE--IPSDTQNCSYLRILVLKFNN-FPGAIPKEIS-NLTKL 427 (541)
Q Consensus 353 ~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~-~~~~L 427 (541)
.+.++++..|. +++.....+...+..|+.+..++|...+. +....+++++|+.+.+..|+ +++.....++ +++.|
T Consensus 269 ~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~L 348 (483)
T KOG4341|consen 269 EILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHL 348 (483)
T ss_pred HhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhh
Confidence 45555554542 34333334444566677777766653221 11223466777777777764 3333333343 46777
Q ss_pred cEEEcccccccccc---CCCcccCCcceEeccCCc-CCCCC----CccccCCCCccEeeCCCCccccccCcccccCCccc
Q 036588 428 EKLDLQYNRLQGTI---PYAGHLFQLQWLDLSDNQ-LSGSL----PSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFL 499 (541)
Q Consensus 428 ~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~-~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 499 (541)
+.+++.+|...... .....++.|+++.+++|. +++.. ......+..|+.+.+++|+....-..+.+..+++|
T Consensus 349 e~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~L 428 (483)
T KOG4341|consen 349 ERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNL 428 (483)
T ss_pred hhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCccc
Confidence 77777777654332 224567777777777773 33321 12223456677777777777555444556667777
Q ss_pred ceeeeccceec-cc-CCCCCCCccccceEEe
Q 036588 500 EELYLSNNMFY-GE-IPSDTPNCSYLRILVV 528 (541)
Q Consensus 500 ~~L~l~~~~~~-~~-~~~~~~~~~~L~~L~l 528 (541)
+.+++.+|.-- .. +..--.++|++++..+
T Consensus 429 eri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 429 ERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred ceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 77777777632 22 2222335666665544
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.97 E-value=7.3e-10 Score=92.00 Aligned_cols=106 Identities=28% Similarity=0.431 Sum_probs=38.7
Q ss_pred CCCeEEEEecCCcceeeeCCccc-CCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcE
Q 036588 20 TYRVTALNISGLNLTVTIPSELG-NLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLES 98 (541)
Q Consensus 20 ~~~l~~L~l~~~~i~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 98 (541)
..++|+|+++++.|+. + +.++ .+.+|+.|++++|.++ .+. .+..+++|++|++++|.+ +.+...+...+|+|++
T Consensus 18 ~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I-~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRI-SSISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred cccccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCC-CccccchHHhCCcCCE
Confidence 3468999999999994 3 3465 5899999999999998 443 577899999999999999 4565556555999999
Q ss_pred eeccccccCccC-CccCCCCCCCcEEecCCCcc
Q 036588 99 LFLKSNMFHGKI-PSTLSSCKRLRETSLSLNDF 130 (541)
Q Consensus 99 L~l~~~~~~~~~-~~~~~~l~~L~~l~~~~~~~ 130 (541)
|++++|++.+.. ...+..+++|++|++.+|++
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 999999987432 23445666666655555554
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.87 E-value=1e-10 Score=110.09 Aligned_cols=170 Identities=26% Similarity=0.410 Sum_probs=116.2
Q ss_pred EEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccc
Q 036588 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKS 103 (541)
Q Consensus 24 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 103 (541)
...|++.+.+. .+|..+..|..|..+.+..|.+. .+|..+.++..|.+++++.|++ ..+|..++. --|++|-+++
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC~--lpLkvli~sN 152 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQL-SHLPDGLCD--LPLKVLIVSN 152 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchh-hcCChhhhc--CcceeEEEec
Confidence 34567777777 78888888888888888888887 8888899999999999999888 577888774 4588888888
Q ss_pred cccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccc
Q 036588 104 NMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISN 183 (541)
Q Consensus 104 ~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~ 183 (541)
|+++ .+|..++....|.+++++.|++. .++..+.++.+|+.|++..|.+. .+|..++.
T Consensus 153 Nkl~-~lp~~ig~~~tl~~ld~s~nei~--------------------slpsql~~l~slr~l~vrRn~l~-~lp~El~~ 210 (722)
T KOG0532|consen 153 NKLT-SLPEEIGLLPTLAHLDVSKNEIQ--------------------SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS 210 (722)
T ss_pred Cccc-cCCcccccchhHHHhhhhhhhhh--------------------hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC
Confidence 8887 78888887777888666665543 23344455555555555555544 34444442
Q ss_pred cCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCccc
Q 036588 184 LTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLS 221 (541)
Q Consensus 184 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 221 (541)
-.|.+|+++.|.+..++..+.++++|++|.+++|.+.
T Consensus 211 -LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 211 -LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred -CceeeeecccCceeecchhhhhhhhheeeeeccCCCC
Confidence 2455555555555544444555555555555555554
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.85 E-value=9e-11 Score=110.47 Aligned_cols=175 Identities=31% Similarity=0.379 Sum_probs=134.7
Q ss_pred eEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccc
Q 036588 355 QFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQY 434 (541)
Q Consensus 355 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 434 (541)
...+++.|.+. .++.... .+..|+.+.+..|.+- .++..+..+..|.+++++.|+++ ..|..+..|+ |+.|.+++
T Consensus 78 ~~aDlsrNR~~-elp~~~~-~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEAC-AFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhccccccc-cCchHHH-HHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence 34455666654 5555443 5667777777776664 66777888888888899888887 4566666665 88888999
Q ss_pred cccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecccCC
Q 036588 435 NRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIP 514 (541)
Q Consensus 435 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 514 (541)
|+++.....++..++|..|+.+.|.+. .++..++++.+|+.|.++.|.+.. +|.+.. .-.|..||++.|++. .+|
T Consensus 153 Nkl~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~--~LpLi~lDfScNkis-~iP 227 (722)
T KOG0532|consen 153 NKLTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELC--SLPLIRLDFSCNKIS-YLP 227 (722)
T ss_pred CccccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHh--CCceeeeecccCcee-ecc
Confidence 998876666788888999999999887 778888889999999999998844 664433 446888999999998 889
Q ss_pred CCCCCccccceEEeecccccccCCCC
Q 036588 515 SDTPNCSYLRILVVQFNNFSGAIPKE 540 (541)
Q Consensus 515 ~~~~~~~~L~~L~l~~~~~~~~~p~~ 540 (541)
..|..++.|++|-|.+|++. +.|+.
T Consensus 228 v~fr~m~~Lq~l~LenNPLq-SPPAq 252 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNPLQ-SPPAQ 252 (722)
T ss_pred hhhhhhhhheeeeeccCCCC-CChHH
Confidence 99999999999999999985 77754
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.85 E-value=3.4e-09 Score=72.13 Aligned_cols=61 Identities=33% Similarity=0.445 Sum_probs=52.3
Q ss_pred CCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCcc
Q 036588 21 YRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNAL 81 (541)
Q Consensus 21 ~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (541)
++|++|++++|+++...+++|..+++|++|++++|.++...+..|.++++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4788999999999977778899999999999999999866677888889999998888764
No 38
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=3.9e-11 Score=103.77 Aligned_cols=208 Identities=19% Similarity=0.198 Sum_probs=119.1
Q ss_pred CccccceeeeCCCCCCeEEEEecCCcceeeeCCcccCC--CCCcEecccccccCCc-cchhhhhc-CCCcEEEeecCccC
Q 036588 7 SVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNL--SSLQTLDLSFNWFSGS-IPASIFNM-SSLLSINFINNALF 82 (541)
Q Consensus 7 ~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~l--~~L~~L~l~~~~~~~~-~~~~~~~l-~~L~~L~l~~~~~~ 82 (541)
+|..|.+..-++ .....+|+.+-+|. |++...+ ....++-+........ +...+.-+ ..|+++|+++..+.
T Consensus 124 VC~Rfyr~~~de--~lW~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it 198 (419)
T KOG2120|consen 124 VCKRFYRLASDE--SLWQTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVIT 198 (419)
T ss_pred HHHHHhhccccc--cceeeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhhee
Confidence 445777776554 47888999998887 6665555 3334444433322211 11122212 36999999998887
Q ss_pred CCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCccc-------cccccCcceEEEecCccccccCCc
Q 036588 83 GELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFF-------WDHTKRNWQQLYLSKNMFYGEIPS 155 (541)
Q Consensus 83 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~-------~~~~~~~L~~L~l~~~~~~~~~~~ 155 (541)
..-...+..+|.+|+.|.+.+.++.+-+...+.+-.+|+.++++.+.-. ....+..|..|++++|........
T Consensus 199 ~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vt 278 (419)
T KOG2120|consen 199 VSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVT 278 (419)
T ss_pred HHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhh
Confidence 6667788888999999999999998888888888888998888766432 344555666666666654432111
Q ss_pred -cccC-CCCccEEEeccCccc---ccCCccccccCCCcEEEccCceee-e-eccCCCCcCCCCEEECCCCc
Q 036588 156 -DIAN-CSYLRILVLQFNNFS---GAIPKEISNLTKLEKLDLQYNKLQ-G-TIPYAGHLYQLQWLDLSDNQ 219 (541)
Q Consensus 156 -~~~~-~~~L~~L~l~~~~i~---~~~~~~l~~l~~L~~L~l~~~~~~-~-~~~~~~~~~~L~~L~l~~~~ 219 (541)
.+.. -++|..|+++|+.-. ..+..--.++++|..|+++++..- . ....+..++.|++|.++.|.
T Consensus 279 v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 279 VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence 1111 145555566554311 011111224455555555554221 1 11123445555555555554
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.81 E-value=4.4e-09 Score=71.58 Aligned_cols=61 Identities=48% Similarity=0.608 Sum_probs=51.8
Q ss_pred CCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeecccc
Q 036588 472 PLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNF 533 (541)
Q Consensus 472 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 533 (541)
|+|++|++++|++ ..++...|.++++|+.|++++|.+....++.|..+++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l-~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKL-TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTE-SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCC-CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5788899998888 557778888889999999999998877778889999999999998875
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.80 E-value=8.4e-09 Score=100.79 Aligned_cols=195 Identities=35% Similarity=0.451 Sum_probs=89.4
Q ss_pred EEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCC-cceEEEcccCcCcCcCChhhhcCCCCccEEEccCc
Q 036588 309 KLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMP-LLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNN 387 (541)
Q Consensus 309 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 387 (541)
.+....+............+.++.+++.++.+.+ ++....... +|+.++++++.+. .++. ....++.|+.|++.+|
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~-~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPS-PLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhh-hhhccccccccccCCc
Confidence 4555555543333334444556666666665552 222333332 5566666655553 2221 1224555555555555
Q ss_pred ccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCcc
Q 036588 388 MFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSF 467 (541)
Q Consensus 388 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 467 (541)
++. .++......+.|+.++++++++... +........|+++.++++...........+.++..+.+.++.+. ..+..
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~~l-~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~ 250 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKISDL-PPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPES 250 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccccC-chhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccch
Confidence 554 2222222455555555555555422 22222233355555555543333333444444444444444443 12333
Q ss_pred ccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceeccc
Q 036588 468 KFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGE 512 (541)
Q Consensus 468 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 512 (541)
++.++++++|++++|.+ ..++. ++...+++.|+++++.+...
T Consensus 251 ~~~l~~l~~L~~s~n~i-~~i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 251 IGNLSNLETLDLSNNQI-SSISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred hccccccceeccccccc-ccccc--ccccCccCEEeccCcccccc
Confidence 44444555555555555 22321 44445555555555555433
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.79 E-value=7.6e-09 Score=101.13 Aligned_cols=193 Identities=34% Similarity=0.393 Sum_probs=117.2
Q ss_pred EEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcC-CCcEEEeecCccCCCCChhhhhhcCCCcEeeccc
Q 036588 25 ALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMS-SLLSINFINNALFGELPPNFCNHLSNLESLFLKS 103 (541)
Q Consensus 25 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 103 (541)
.++...+.+. .....+..++.++.|++.++.++ .++....... +|+.|+++++.+ ..+|..+.. +++|+.|+++.
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i-~~l~~~~~~-l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRN-LPNLKNLDLSF 172 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccch-hhhhhhhhc-cccccccccCC
Confidence 3556666654 23344555678888888888887 7777777674 888888888887 455555555 88888888888
Q ss_pred cccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccc
Q 036588 104 NMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISN 183 (541)
Q Consensus 104 ~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~ 183 (541)
|++. .++...+..++|+.+++++ +.+.+ ++.......+|+++.+.++.+. ..+..+.+
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~-------------------N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~ 230 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSG-------------------NKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSN 230 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccC-------------------Ccccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhh
Confidence 8887 4455554666666644444 44332 2222233444666666665322 33444555
Q ss_pred cCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCccc
Q 036588 184 LTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLS 245 (541)
Q Consensus 184 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 245 (541)
+..+..+.+.++.+......++.++.++.|+++++.+..... +....+++.++++++.+.
T Consensus 231 ~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 231 LKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cccccccccCCceeeeccchhccccccceecccccccccccc--ccccCccCEEeccCcccc
Confidence 566666666666555444455666666666666666653322 555666666666666554
No 42
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.74 E-value=1.5e-10 Score=105.00 Aligned_cols=256 Identities=18% Similarity=0.116 Sum_probs=171.9
Q ss_pred cCcccccEEEecccc-cCCCcc-ccccccCCccEEEeeCCcc-cccccc--ccccCCCcEEeccCccccC--CCCcccCC
Q 036588 278 ANCSYLRILVLRFNN-FSGAIP-KEISNLTKLEKLDLQYNRL-QGTILY--VGHLLQLQWLDLSDNQLSG--SLPSFKFN 350 (541)
Q Consensus 278 ~~~~~L~~L~l~~~~-~~~~~~-~~l~~l~~L~~L~l~~~~~-~~~~~~--~~~~~~L~~L~l~~~~~~~--~~~~~~~~ 350 (541)
..+|++++|.+.+|. +++... ..-..|++|+++++..|.. +..... ...|++|++++++-|.-.. .+...+.+
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 356777777776664 222222 2234689999999998643 322222 5678999999998886332 23344567
Q ss_pred CCcceEEEcccCcCc-CcCChhhhcCCCCccEEEccCcccccCC--CcCCcCCccCCeEEcccCC-CCCccchhhh-ccC
Q 036588 351 MPLLQFLDLSSNRLS-VELPTNVFHNLPFLEELYLSNNMFYGEI--PSDTQNCSYLRILVLKFNN-FPGAIPKEIS-NLT 425 (541)
Q Consensus 351 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~-~~~ 425 (541)
+..++++..+||.-. .......-..++-+.++++..|...... ...-.++..|+.++.++|. +++....++. ++.
T Consensus 241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~ 320 (483)
T KOG4341|consen 241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCH 320 (483)
T ss_pred chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCC
Confidence 778888888876521 1222333335666777777777533221 1223468889999998874 3444444554 589
Q ss_pred CCcEEEcccccccccc---CCCcccCCcceEeccCCcC-CC-CCCccccCCCCccEeeCCCCccccccCcccc----cCC
Q 036588 426 KLEKLDLQYNRLQGTI---PYAGHLFQLQWLDLSDNQL-SG-SLPSFKFKMPLLQFLDLSSNRLSTELPTNVF----HNL 496 (541)
Q Consensus 426 ~L~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~-~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~~ 496 (541)
+|+.+.+++|+.-... ....+.+.|+.+++.++.. ++ .+...-.++|.|+.+.++.|...++.....+ ...
T Consensus 321 ~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~ 400 (483)
T KOG4341|consen 321 NLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSL 400 (483)
T ss_pred ceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccc
Confidence 9999999999854332 2256789999999999854 33 2444556899999999999987554322222 345
Q ss_pred cccceeeecccee-cccCCCCCCCccccceEEeecccc
Q 036588 497 PFLEELYLSNNMF-YGEIPSDTPNCSYLRILVVQFNNF 533 (541)
Q Consensus 497 ~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~ 533 (541)
..|+.+.+.+|+. ++...+.+..+++|+.+++-+|.-
T Consensus 401 ~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 401 EGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred cccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 6799999999995 467888999999999999998853
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=5.2e-09 Score=90.83 Aligned_cols=87 Identities=30% Similarity=0.357 Sum_probs=57.1
Q ss_pred ccCCccEEEeeCCccccccc---cccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCc
Q 036588 303 NLTKLEKLDLQYNRLQGTIL---YVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFL 379 (541)
Q Consensus 303 ~l~~L~~L~l~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 379 (541)
.++.++.+++.+|.+..... -+.++|.|++|+++.|.+.+.+........+|+.|.+.+..+...-.......+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 35566666666666553322 256667777777777766654443334566888888888777655556667778888
Q ss_pred cEEEccCccc
Q 036588 380 EELYLSNNMF 389 (541)
Q Consensus 380 ~~L~l~~~~~ 389 (541)
++++++.|..
T Consensus 149 telHmS~N~~ 158 (418)
T KOG2982|consen 149 TELHMSDNSL 158 (418)
T ss_pred hhhhhccchh
Confidence 8888888743
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=4.6e-10 Score=97.24 Aligned_cols=177 Identities=23% Similarity=0.197 Sum_probs=98.1
Q ss_pred CccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccc-cCCCcc-ccccccCCccEE
Q 036588 233 LLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNN-FSGAIP-KEISNLTKLEKL 310 (541)
Q Consensus 233 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~-~~l~~l~~L~~L 310 (541)
.|++++++...+.......+++.|.+|+.|++++..+.+.....++...+|+.++++.+. +++... -.+.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466666666655444444556777777777777777766666666667777777777663 332211 235667778888
Q ss_pred EeeCCcccccccc---ccccCCCcEEeccCcccc---CCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEc
Q 036588 311 DLQYNRLQGTILY---VGHLLQLQWLDLSDNQLS---GSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYL 384 (541)
Q Consensus 311 ~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 384 (541)
++++|........ ..--++|+.|+++|+.-. +.+......||+|.+|+++++..........+..++.|+++.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 8887765433222 122346666777666421 1112223456666666666654211222233335666666666
Q ss_pred cCcccccCCCc---CCcCCccCCeEEcccC
Q 036588 385 SNNMFYGEIPS---DTQNCSYLRILVLKFN 411 (541)
Q Consensus 385 ~~~~~~~~~~~---~~~~~~~L~~L~l~~~ 411 (541)
+.|.. ..|. .+...|+|.+|++.+|
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 66642 1221 2344555666655554
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.55 E-value=1.2e-08 Score=99.71 Aligned_cols=225 Identities=30% Similarity=0.286 Sum_probs=123.5
Q ss_pred ccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCcc
Q 036588 301 ISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLE 380 (541)
Q Consensus 301 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 380 (541)
+..+.+|+.+++.+|.+......+..+++|+++++++|.+.... .+..++.|+.|.+.+|.+. .+.. +..++.|+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~~~--~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DISG--LESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccccccccc--chhhccchhhheeccCcch-hccC--Cccchhhh
Confidence 34445555555555555433332445555555555555554321 1223444666666666654 2211 22366677
Q ss_pred EEEccCcccccCCC-cCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccC--CcceEeccC
Q 036588 381 ELYLSNNMFYGEIP-SDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLF--QLQWLDLSD 457 (541)
Q Consensus 381 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~--~L~~L~l~~ 457 (541)
.+++++|.+...-. . ...+.+++.+.+.++.+... ..+..+..+..+.+..+.+.... .....+ +|+.+++.+
T Consensus 166 ~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~-~l~~~~~~~L~~l~l~~ 241 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLE-GLNELVMLHLRELYLSG 241 (414)
T ss_pred cccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceecc-CcccchhHHHHHHhccc
Confidence 77777776653222 1 35666777777777766432 23333444444466666655222 222233 377888888
Q ss_pred CcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceeccc---CCCC-CCCccccceEEeecccc
Q 036588 458 NQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGE---IPSD-TPNCSYLRILVVQFNNF 533 (541)
Q Consensus 458 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~-~~~~~~L~~L~l~~~~~ 533 (541)
+.+.. .+..+..++.++.+++.++.+.. . ..+...+.+..+...++++... ..+. ....+.++.+++.+++.
T Consensus 242 n~i~~-~~~~~~~~~~l~~l~~~~n~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 242 NRISR-SPEGLENLKNLPVLDLSSNRISN-L--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPI 317 (414)
T ss_pred Ccccc-ccccccccccccccchhhccccc-c--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcc
Confidence 87763 22445567778888888777733 2 3345566677777777765522 2222 55667777777777776
Q ss_pred cccCC
Q 036588 534 SGAIP 538 (541)
Q Consensus 534 ~~~~p 538 (541)
....|
T Consensus 318 ~~~~~ 322 (414)
T KOG0531|consen 318 RKISS 322 (414)
T ss_pred ccccc
Confidence 65443
No 46
>PLN03150 hypothetical protein; Provisional
Probab=98.54 E-value=7.8e-08 Score=98.46 Aligned_cols=112 Identities=28% Similarity=0.349 Sum_probs=92.2
Q ss_pred CCcEEEccccccccccCC-CcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeee
Q 036588 426 KLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYL 504 (541)
Q Consensus 426 ~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 504 (541)
.++.|+++++.+.+..+. +..+++|+.|++++|.+...+|..++.+++|+.|++++|.+.+.+| ..+..+++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP-~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP-ESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCc-hHHhcCCCCCEEEC
Confidence 367888998888766555 6788899999999998888888888899999999999999988777 56788899999999
Q ss_pred ccceecccCCCCCCCc-cccceEEeecccccccCC
Q 036588 505 SNNMFYGEIPSDTPNC-SYLRILVVQFNNFSGAIP 538 (541)
Q Consensus 505 ~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~p 538 (541)
++|.+.+.+|..+... ..+..+++.+|+.....|
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 9999998888887663 467788888887666555
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=5.4e-08 Score=84.70 Aligned_cols=205 Identities=21% Similarity=0.129 Sum_probs=120.3
Q ss_pred CCccEEEeccCcccccCC-cccc-ccCCCcEEEccCceeeeecc---CCCCcCCCCEEECCCCcccCCCCcccCCCCCcc
Q 036588 161 SYLRILVLQFNNFSGAIP-KEIS-NLTKLEKLDLQYNKLQGTIP---YAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQ 235 (541)
Q Consensus 161 ~~L~~L~l~~~~i~~~~~-~~l~-~l~~L~~L~l~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 235 (541)
..++.+.+.++.|..... ..++ .++.++++++.+|.+.++.. .+.++|.|+.|+++.|.+...+........+|+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 455566666766653221 1232 45778888888887775433 267888999999988887654444334667888
Q ss_pred EEeccCCcccCcCChhhhccCCCCcEEEecCccccccC--CCCCc-CcccccEEEecccccCC--CccccccccCCccEE
Q 036588 236 FLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEI--PSDTA-NCSYLRILVLRFNNFSG--AIPKEISNLTKLEKL 310 (541)
Q Consensus 236 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~-~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L 310 (541)
++-+.+..+.-.-.......+|.+++|+++.|++.... ..+.. .-+.++++...+|.... .....-..+|++..+
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV 204 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence 98888887654444556678888888888887443211 11111 23456666666664321 112222335667777
Q ss_pred EeeCCccccccc--cccccCCCcEEeccCccccC-CCCcccCCCCcceEEEcccCcCc
Q 036588 311 DLQYNRLQGTIL--YVGHLLQLQWLDLSDNQLSG-SLPSFKFNMPLLQFLDLSSNRLS 365 (541)
Q Consensus 311 ~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~ 365 (541)
-+..|++..... ....+|.+..|++..+.+.+ ...+.+..++.|+.|.++++++.
T Consensus 205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 777676553322 24445555566666655543 11233445666666666666553
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.36 E-value=4.6e-08 Score=95.67 Aligned_cols=219 Identities=30% Similarity=0.315 Sum_probs=148.8
Q ss_pred cccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccE
Q 036588 302 SNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEE 381 (541)
Q Consensus 302 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 381 (541)
..+..++.+.+..+.+......+..+.+++.+++.++.+... ...+..+++|+.|++++|.|+.... +..++.|+.
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~---l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG---LSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccc---hhhccchhh
Confidence 345566666677777765555577888999999999988743 3336678999999999998863222 235666999
Q ss_pred EEccCcccccCCCcCCcCCccCCeEEcccCCCCCccc-hhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcC
Q 036588 382 LYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIP-KEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQL 460 (541)
Q Consensus 382 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 460 (541)
|++.+|.+... ..+..+++|+.+++++|++..... . ...+.+++.+.+.++.+.. +........+..+++..+.+
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~-i~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE-IEGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc-ccchHHHHHHHHhhcccccc
Confidence 99999988532 356668889999999988875443 2 4677888888888887762 23333444455556666666
Q ss_pred CCCCCccccCCC--CccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeeccccc
Q 036588 461 SGSLPSFKFKMP--LLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFS 534 (541)
Q Consensus 461 ~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 534 (541)
...-. +...+ .|+.+++.++.+.. .+ ..+..+..+..+++.++.+... +.+...+.+..+....+.+.
T Consensus 221 ~~~~~--l~~~~~~~L~~l~l~~n~i~~-~~-~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 221 SKLEG--LNELVMLHLRELYLSGNRISR-SP-EGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred eeccC--cccchhHHHHHHhcccCcccc-cc-ccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence 53211 12222 37888888888833 32 4566778888888888887744 45666677777777766654
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.16 E-value=7.3e-08 Score=93.96 Aligned_cols=180 Identities=27% Similarity=0.282 Sum_probs=111.1
Q ss_pred CcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcc------cc---cCCCcCCcCCccCCeEEcccCCCCC
Q 036588 345 PSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNM------FY---GEIPSDTQNCSYLRILVLKFNNFPG 415 (541)
Q Consensus 345 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------~~---~~~~~~~~~~~~L~~L~l~~~~~~~ 415 (541)
+-.+..+.+|+.|.+.+|++.. ..++..--..|++|.-.+.- +. +.+...+. .-.|.+.+++.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~-Wn~L~~a~fsyN~L~- 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPV-WNKLATASFSYNRLV- 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchh-hhhHhhhhcchhhHH-
Confidence 3445678899999999988752 11111111223333222110 00 01111111 124666677777665
Q ss_pred ccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccC
Q 036588 416 AIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHN 495 (541)
Q Consensus 416 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 495 (541)
.+..++.-++.++.|++++|++. ....+..+++|+.|++++|.+.........++. |..|.+++|.+.+ + ..+.+
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~-~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~t-L--~gie~ 252 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFT-KVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTT-L--RGIEN 252 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhh-hhHHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHh-h--hhHHh
Confidence 45566777788888888888877 344677788888888888877633222233343 8888888888844 3 34677
Q ss_pred Ccccceeeeccceeccc-CCCCCCCccccceEEeecccc
Q 036588 496 LPFLEELYLSNNMFYGE-IPSDTPNCSYLRILVVQFNNF 533 (541)
Q Consensus 496 ~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~ 533 (541)
+.+|+.||++.|-+.+- -.+.+..+.+|+.|++.+|++
T Consensus 253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 88888888888887743 223466678888888888876
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.11 E-value=4.6e-07 Score=92.48 Aligned_cols=38 Identities=18% Similarity=0.339 Sum_probs=21.8
Q ss_pred CCCcEEEeecCc-cCCCCChhhhhhcCCCcEeecccccc
Q 036588 69 SSLLSINFINNA-LFGELPPNFCNHLSNLESLFLKSNMF 106 (541)
Q Consensus 69 ~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~ 106 (541)
.+|++|+++|.. +....|..++..+|+|+.|.+.+-.+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~ 160 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQF 160 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCcee
Confidence 466666666643 23344555666666666666655433
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.09 E-value=5.8e-07 Score=77.37 Aligned_cols=220 Identities=22% Similarity=0.155 Sum_probs=121.1
Q ss_pred cCCCCccEEEeccCcccccCCcc----ccccCCCcEEEccCceeee-----------eccCCCCcCCCCEEECCCCcccC
Q 036588 158 ANCSYLRILVLQFNNFSGAIPKE----ISNLTKLEKLDLQYNKLQG-----------TIPYAGHLYQLQWLDLSDNQLSG 222 (541)
Q Consensus 158 ~~~~~L~~L~l~~~~i~~~~~~~----l~~l~~L~~L~l~~~~~~~-----------~~~~~~~~~~L~~L~l~~~~~~~ 222 (541)
..+..+..++++||.|......+ +++-.+|+..+++.-.... ..+.+-.||+|+..++++|.+..
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 44677777888887776443333 3344667666665432111 22335677888888888887765
Q ss_pred CCC----cccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCcc
Q 036588 223 SLP----SFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIP 298 (541)
Q Consensus 223 ~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 298 (541)
..+ +.+.....|++|.+++|.+.......+-.. |..| ..+ .-.+.-|.|+.+....|.+.....
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigka---l~~l--a~n-------KKaa~kp~Le~vicgrNRlengs~ 174 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKA---LFHL--AYN-------KKAADKPKLEVVICGRNRLENGSK 174 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHH---HHHH--HHH-------hhhccCCCceEEEeccchhccCcH
Confidence 444 345566777788887776632222111100 0000 000 011233556666666665442211
Q ss_pred ----ccccccCCccEEEeeCCccccccc------cccccCCCcEEeccCccccC----CCCcccCCCCcceEEEcccCcC
Q 036588 299 ----KEISNLTKLEKLDLQYNRLQGTIL------YVGHLLQLQWLDLSDNQLSG----SLPSFKFNMPLLQFLDLSSNRL 364 (541)
Q Consensus 299 ----~~l~~l~~L~~L~l~~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~ 364 (541)
..+..-..|+.+.+..|.+..... .+..+.+|+.|++.+|.++. ........++.|+.|.+.+|-+
T Consensus 175 ~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 175 ELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred HHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence 223333577777777777654321 25667788888888876652 2334455677788888888766
Q ss_pred cCcCChhhhc-----CCCCccEEEccCccc
Q 036588 365 SVELPTNVFH-----NLPFLEELYLSNNMF 389 (541)
Q Consensus 365 ~~~~~~~~~~-----~~~~L~~L~l~~~~~ 389 (541)
+..-....+. ..|+|..|...++.+
T Consensus 255 s~~G~~~v~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 255 SNEGVKSVLRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred ccccHHHHHHHhhhhcCCCccccccchhhh
Confidence 5333322222 246666666666654
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.08 E-value=1.3e-07 Score=92.27 Aligned_cols=199 Identities=26% Similarity=0.193 Sum_probs=129.1
Q ss_pred ccCCccEEEeeCCccccc--cccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhc------
Q 036588 303 NLTKLEKLDLQYNRLQGT--ILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFH------ 374 (541)
Q Consensus 303 ~l~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------ 374 (541)
.+++++.+.+-.-.-.+. ...+..+.+|++|.+.+|++.. ......--..|++|.-.+. . ......|.
T Consensus 82 ~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~-~~GL~~lr~qLe~LIC~~S-l--~Al~~v~ascggd~ 157 (1096)
T KOG1859|consen 82 FLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST-AKGLQELRHQLEKLICHNS-L--DALRHVFASCGGDI 157 (1096)
T ss_pred HHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh-hhhhHHHHHhhhhhhhhcc-H--HHHHHHHHHhcccc
Confidence 345556665544433222 2236778899999999998763 1111111123333322211 0 01111111
Q ss_pred ----CCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCc
Q 036588 375 ----NLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQL 450 (541)
Q Consensus 375 ----~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L 450 (541)
....|...++++|.+. .+...++-++.++.|+++.|++.... .+..|++|++|+|+.|.+......-..-.+|
T Consensus 158 ~ns~~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L 234 (1096)
T KOG1859|consen 158 SNSPVWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKL 234 (1096)
T ss_pred ccchhhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhhh
Confidence 2345777788888775 55667888899999999999987543 7888999999999999987443333333459
Q ss_pred ceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceec
Q 036588 451 QWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFY 510 (541)
Q Consensus 451 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 510 (541)
..|.+++|.++. ...+.++.+|+.||+++|-+.+.-...-+..+..|+.|++.|||+-
T Consensus 235 ~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 235 QLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 999999998763 2345688899999999998755333234556678999999999976
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.07 E-value=6e-07 Score=77.29 Aligned_cols=86 Identities=22% Similarity=0.192 Sum_probs=51.2
Q ss_pred CcccccEEEecccccCCC----ccccccccCCccEEEeeCCccccc-----------cccccccCCCcEEeccCccccCC
Q 036588 279 NCSYLRILVLRFNNFSGA----IPKEISNLTKLEKLDLQYNRLQGT-----------ILYVGHLLQLQWLDLSDNQLSGS 343 (541)
Q Consensus 279 ~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~-----------~~~~~~~~~L~~L~l~~~~~~~~ 343 (541)
.+..++.+++++|.+... +...+.+-.+|+..++++-..... ...+..||.|+.+++++|-+...
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 356788888888877543 334455567777777765432211 12245677777777777765533
Q ss_pred CC----cccCCCCcceEEEcccCcC
Q 036588 344 LP----SFKFNMPLLQFLDLSSNRL 364 (541)
Q Consensus 344 ~~----~~~~~~~~L~~L~l~~~~~ 364 (541)
.+ ..+.+...|++|.+++|.+
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCC
Confidence 22 3334556666676666655
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.98 E-value=1.1e-06 Score=89.72 Aligned_cols=156 Identities=23% Similarity=0.305 Sum_probs=98.4
Q ss_pred CcceEEEcccCc-CcCcCChhhhcCCCCccEEEccCccccc-CCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcE
Q 036588 352 PLLQFLDLSSNR-LSVELPTNVFHNLPFLEELYLSNNMFYG-EIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEK 429 (541)
Q Consensus 352 ~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 429 (541)
.+|+.|+++|.. +...++......+|+|+.|.+.+-.+.. .......++|+|..||++++.++.. ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 355555555533 2224455556667888888777765532 2233456778888888888877644 56777888888
Q ss_pred EEcccccccc--ccCCCcccCCcceEeccCCcCCCCC------CccccCCCCccEeeCCCCccccccCcccccCCcccce
Q 036588 430 LDLQYNRLQG--TIPYAGHLFQLQWLDLSDNQLSGSL------PSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEE 501 (541)
Q Consensus 430 L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 501 (541)
|.+.+-.+.. ....+..+++|+.||++........ .+....+|+|+.||.++..+...+....+..-|+|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 8777766553 2223567888888888876543211 1122357888888888888876665555566677777
Q ss_pred eeecccee
Q 036588 502 LYLSNNMF 509 (541)
Q Consensus 502 L~l~~~~~ 509 (541)
+-..+|..
T Consensus 280 i~~~~~~~ 287 (699)
T KOG3665|consen 280 IAALDCLA 287 (699)
T ss_pred hhhhhhhc
Confidence 76655443
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.96 E-value=1.7e-05 Score=65.55 Aligned_cols=107 Identities=21% Similarity=0.205 Sum_probs=78.1
Q ss_pred CCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEcccccccccc--CCCcccCCcceE
Q 036588 376 LPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTI--PYAGHLFQLQWL 453 (541)
Q Consensus 376 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L 453 (541)
......+++.+|.+. -...|..++.|.+|.+.+|.++.+.+.--..+++|..|.+.+|.+.... ..+..+|.|++|
T Consensus 41 ~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 345566777877764 2246778888888889888888777766666788889999888876433 336778899999
Q ss_pred eccCCcCCCC---CCccccCCCCccEeeCCCCcc
Q 036588 454 DLSDNQLSGS---LPSFKFKMPLLQFLDLSSNRL 484 (541)
Q Consensus 454 ~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~ 484 (541)
.+-+|++... -...+..+|+|++||+.+-..
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 9988887641 113566789999999887643
No 56
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.86 E-value=6.3e-05 Score=60.40 Aligned_cols=63 Identities=22% Similarity=0.267 Sum_probs=25.4
Q ss_pred hhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeC
Q 036588 250 TNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQY 314 (541)
Q Consensus 250 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 314 (541)
...|..+++|+.+.+.. .+.......|..+++|+.+.+.++ +.......+..+++++.+.+..
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence 34455555555555543 233344455555555555555543 3323333445555555555543
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.83 E-value=0.00012 Score=69.02 Aligned_cols=135 Identities=16% Similarity=0.161 Sum_probs=71.8
Q ss_pred CCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccC-CCCCccchhhhccCCCc
Q 036588 350 NMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFN-NFPGAIPKEISNLTKLE 428 (541)
Q Consensus 350 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~ 428 (541)
.+++++.|++++|.++ .+|. -.++|+.|.+.+|.....++..+ .++|++|++++| .+. ..| ++|+
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sLe 115 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESVR 115 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------cccc
Confidence 4577778888877665 4441 23467788777765433444333 357777777777 332 222 3466
Q ss_pred EEEccccccccccCCCcccCCcceEeccCCc-CC-CCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeecc
Q 036588 429 KLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQ-LS-GSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSN 506 (541)
Q Consensus 429 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 506 (541)
.|.+.++..... -.-.++|+.|.+.++. .. ...+.. -.++|++|++.+|.... +| ..++ .+|+.|+++.
T Consensus 116 ~L~L~~n~~~~L---~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~-LP-~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 116 SLEIKGSATDSI---KNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNII-LP-EKLP--ESLQSITLHI 186 (426)
T ss_pred eEEeCCCCCccc---ccCcchHhheeccccccccccccccc--cCCcccEEEecCCCccc-Cc-cccc--ccCcEEEecc
Confidence 666655433211 1123456666664322 11 011111 12567777777777532 33 2233 4777777765
Q ss_pred c
Q 036588 507 N 507 (541)
Q Consensus 507 ~ 507 (541)
+
T Consensus 187 n 187 (426)
T PRK15386 187 E 187 (426)
T ss_pred c
Confidence 4
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.82 E-value=3.3e-05 Score=63.87 Aligned_cols=103 Identities=23% Similarity=0.245 Sum_probs=53.4
Q ss_pred cCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCC-cccCCcceEeccCCcCCCC-CCccccCCCCccEeeC
Q 036588 402 YLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYA-GHLFQLQWLDLSDNQLSGS-LPSFKFKMPLLQFLDL 479 (541)
Q Consensus 402 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l 479 (541)
....+|+++|++.. ...|..++.|.+|.+.+|+++...+.+ ..+++|+.|.+.+|.+.+. -..-+..||+|++|.+
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 45556666665532 234555666666666666666544443 3345566666666655431 1122445666666666
Q ss_pred CCCccccccC--cccccCCcccceeeecc
Q 036588 480 SSNRLSTELP--TNVFHNLPFLEELYLSN 506 (541)
Q Consensus 480 ~~~~~~~~~~--~~~~~~~~~L~~L~l~~ 506 (541)
-+|++...-. ...+..+|+|+.||..+
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 6665532111 02334455666665553
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.80 E-value=6.2e-05 Score=60.46 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=12.9
Q ss_pred CCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEc
Q 036588 396 DTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDL 432 (541)
Q Consensus 396 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 432 (541)
.|.++++|+.+.+..+ +......+|..+++++.+.+
T Consensus 30 ~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~ 65 (129)
T PF13306_consen 30 AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITF 65 (129)
T ss_dssp TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEE
T ss_pred hccccccccccccccc-ccccceeeeecccccccccc
Confidence 3444444444444432 33333334444444444444
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.74 E-value=3.5e-05 Score=47.65 Aligned_cols=35 Identities=34% Similarity=0.585 Sum_probs=15.6
Q ss_pred CCcEecccccccCCccchhhhhcCCCcEEEeecCcc
Q 036588 46 SLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNAL 81 (541)
Q Consensus 46 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (541)
+|++|++++|.++ .+|..+.++++|++|++++|.+
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence 4444444444444 3444444444444444444444
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.69 E-value=2.9e-05 Score=48.01 Aligned_cols=37 Identities=41% Similarity=0.558 Sum_probs=31.8
Q ss_pred CCeEEEEecCCcceeeeCCcccCCCCCcEecccccccC
Q 036588 21 YRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFS 58 (541)
Q Consensus 21 ~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~ 58 (541)
++|++|++++++|+ .+|..++++++|+.|++++|.++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 36899999999999 56777999999999999999987
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.57 E-value=0.00047 Score=65.16 Aligned_cols=57 Identities=19% Similarity=0.139 Sum_probs=31.3
Q ss_pred ccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeecccc
Q 036588 41 LGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSN 104 (541)
Q Consensus 41 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 104 (541)
+..+++++.|++++|.++ .+|. --.+|++|.+.+|...+.+|..+ .++|++|++++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCc
Confidence 334566666666666555 4451 11246666666655445555433 346666666655
No 63
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.55 E-value=4.9e-06 Score=84.08 Aligned_cols=109 Identities=27% Similarity=0.206 Sum_probs=46.3
Q ss_pred cccccEEEecccccCCC--ccccccccCCccEEEeeCC-cccccc-----ccccccCCCcEEeccCcc-ccCCC-CcccC
Q 036588 280 CSYLRILVLRFNNFSGA--IPKEISNLTKLEKLDLQYN-RLQGTI-----LYVGHLLQLQWLDLSDNQ-LSGSL-PSFKF 349 (541)
Q Consensus 280 ~~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~-~~~~~~-----~~~~~~~~L~~L~l~~~~-~~~~~-~~~~~ 349 (541)
++.|+.+.+.++.-... .......+++|+.|+++++ ...... .....+++|+.++++.+. +++.. .....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56666666665532212 2234455666666666652 111000 012334455555555444 22111 11111
Q ss_pred CCCcceEEEcccCc-CcCcCChhhhcCCCCccEEEccCcc
Q 036588 350 NMPLLQFLDLSSNR-LSVELPTNVFHNLPFLEELYLSNNM 388 (541)
Q Consensus 350 ~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~ 388 (541)
.|++|+.|.+.+|. +++.....+...++.|++|++.+|.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 24455555444444 3333333344444445555544443
No 64
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.47 E-value=7.7e-06 Score=82.66 Aligned_cols=239 Identities=24% Similarity=0.160 Sum_probs=135.6
Q ss_pred hhccCCCCcEEEecCcccccc--CCCCCcCcccccEEEeccc-ccCCC----ccccccccCCccEEEeeCCc-ccccccc
Q 036588 252 VFHNLPFLEELYLSNNMFYGE--IPSDTANCSYLRILVLRFN-NFSGA----IPKEISNLTKLEKLDLQYNR-LQGTILY 323 (541)
Q Consensus 252 ~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~-~~~~~----~~~~l~~l~~L~~L~l~~~~-~~~~~~~ 323 (541)
....++.|+.+.+.++.-... .......++.|+.|+++++ ..... .......+++|+.++++++. +.+....
T Consensus 183 l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 183 LLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred HHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence 344578888888887743222 2233456788999999873 21111 12344567889999998887 4332222
Q ss_pred --ccccCCCcEEeccCcc-ccC-CCCcccCCCCcceEEEcccCcCc-CcCChhhhcCCCCccEEEccCcccccCCCcCCc
Q 036588 324 --VGHLLQLQWLDLSDNQ-LSG-SLPSFKFNMPLLQFLDLSSNRLS-VELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQ 398 (541)
Q Consensus 324 --~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 398 (541)
...+++|+.|.+.+|. +++ .+......++.|++|++++|... +........++++++.+.+....
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~---------- 332 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN---------- 332 (482)
T ss_pred HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC----------
Confidence 2348899999988777 332 33444567888999999987643 22233345567777776544332
Q ss_pred CCccCCeEEcccCCCC---CccchhhhccCCCcEEEcccccccccc--CCCcccCCcceEeccCCcCCCCCCccccCCCC
Q 036588 399 NCSYLRILVLKFNNFP---GAIPKEISNLTKLEKLDLQYNRLQGTI--PYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPL 473 (541)
Q Consensus 399 ~~~~L~~L~l~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 473 (541)
.|+.++.+.+.++... .........|+.++.+.+..+...... .....++.|. ..+..+ ......
T Consensus 333 ~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~---------~~~~~~ 402 (482)
T KOG1947|consen 333 GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR---------LCRSDS 402 (482)
T ss_pred CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH---------hccCCc
Confidence 1556666666554331 233335567888888888887733222 1134444442 111111 111222
Q ss_pred ccEeeCCCCccccccCcccccC-Ccccceeeeccceec
Q 036588 474 LQFLDLSSNRLSTELPTNVFHN-LPFLEELYLSNNMFY 510 (541)
Q Consensus 474 L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~ 510 (541)
++.|++..|...+.-....... +..++.+++.+++..
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence 6777777776533322222222 556677777776644
No 65
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.47 E-value=5.5e-06 Score=63.77 Aligned_cols=106 Identities=25% Similarity=0.201 Sum_probs=76.1
Q ss_pred ccCCeEEcccCCCCCccch---hhhccCCCcEEEccccccccccCCC-cccCCcceEeccCCcCCCCCCccccCCCCccE
Q 036588 401 SYLRILVLKFNNFPGAIPK---EISNLTKLEKLDLQYNRLQGTIPYA-GHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQF 476 (541)
Q Consensus 401 ~~L~~L~l~~~~~~~~~~~---~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 476 (541)
.-+..++++.|++.+ .+. .+.....|+.+++++|.+....+.+ ..++..+.+++.+|.++ ..|..++.+|.|+.
T Consensus 27 kE~h~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred HHhhhcccccchhhH-HHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 356678888888763 233 3445677788899999887555443 45678888999999888 55666888999999
Q ss_pred eeCCCCccccccCcccccCCcccceeeeccceec
Q 036588 477 LDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFY 510 (541)
Q Consensus 477 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 510 (541)
|+++.|++.- .+ ..+..+.++-.|+..++.+.
T Consensus 105 lNl~~N~l~~-~p-~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 105 LNLRFNPLNA-EP-RVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred cccccCcccc-ch-HHHHHHHhHHHhcCCCCccc
Confidence 9999998833 44 34444777777777777777
No 66
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.28 E-value=5.6e-05 Score=58.38 Aligned_cols=100 Identities=23% Similarity=0.335 Sum_probs=47.6
Q ss_pred EEEEecCCcceeeeCCc---ccCCCCCcEecccccccCCccchhhh-hcCCCcEEEeecCccCCCCChhhhhhcCCCcEe
Q 036588 24 TALNISGLNLTVTIPSE---LGNLSSLQTLDLSFNWFSGSIPASIF-NMSSLLSINFINNALFGELPPNFCNHLSNLESL 99 (541)
Q Consensus 24 ~~L~l~~~~i~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 99 (541)
-.++++.|.+. .++++ +....+|+..+|++|.+. .+|..|. .++..+.|++.+|.+ ..+|..+.. ++.|+.|
T Consensus 30 h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~nei-sdvPeE~Aa-m~aLr~l 105 (177)
T KOG4579|consen 30 HFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEI-SDVPEELAA-MPALRSL 105 (177)
T ss_pred hhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhh-hhchHHHhh-hHHhhhc
Confidence 34445555443 22222 233344455555555554 4444443 233555555555555 345555444 5555555
Q ss_pred eccccccCccCCccCCCCCCCcEEecCCC
Q 036588 100 FLKSNMFHGKIPSTLSSCKRLRETSLSLN 128 (541)
Q Consensus 100 ~l~~~~~~~~~~~~~~~l~~L~~l~~~~~ 128 (541)
+++.|.+. ..|..+..+.++.+|+...+
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCC
Confidence 55555554 44444444555555544444
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=2.1e-05 Score=68.34 Aligned_cols=101 Identities=21% Similarity=0.164 Sum_probs=64.1
Q ss_pred CccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCC-CccccCCCCccEee
Q 036588 400 CSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSL-PSFKFKMPLLQFLD 478 (541)
Q Consensus 400 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~ 478 (541)
+.+.+.|++++|.++++ .....++.|+.|.|+-|++.. ...+..|++|++|+|..|.+.+.- .+.+.++|+|+.|.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIss-L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISS-LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeecccccc-chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 45677788888887643 345567888888888887763 334556777888888777766311 12345677777777
Q ss_pred CCCCccccccCc----ccccCCcccceee
Q 036588 479 LSSNRLSTELPT----NVFHNLPFLEELY 503 (541)
Q Consensus 479 l~~~~~~~~~~~----~~~~~~~~L~~L~ 503 (541)
|..|+-.+..+. ..+..+|+|++||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 777765443321 1234466666664
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.82 E-value=6.7e-05 Score=65.28 Aligned_cols=100 Identities=23% Similarity=0.247 Sum_probs=60.9
Q ss_pred CCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccc--cCCCcccCCcce
Q 036588 375 NLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGT--IPYAGHLFQLQW 452 (541)
Q Consensus 375 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~ 452 (541)
.+.+.+.|+..+|.+.++ .....++.|+.|.|+-|+++.. ..|..|++|++|.|..|.+.+. ...+.++|+|+.
T Consensus 17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 345666777777776532 2345677777777777777633 3566777777777777766532 222566677777
Q ss_pred EeccCCcCCCCCC-----ccccCCCCccEee
Q 036588 453 LDLSDNQLSGSLP-----SFKFKMPLLQFLD 478 (541)
Q Consensus 453 L~l~~~~~~~~~~-----~~~~~~~~L~~L~ 478 (541)
|-|..|+-..... ..+..+|+|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 7777665432211 1345567777665
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.80 E-value=0.00038 Score=60.43 Aligned_cols=104 Identities=22% Similarity=0.208 Sum_probs=52.9
Q ss_pred CCCCccEEEccCcccccCCCcCCcCCccCCeEEcccC--CCCCccchhhhccCCCcEEEcccccccc--ccCCCcccCCc
Q 036588 375 NLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFN--NFPGAIPKEISNLTKLEKLDLQYNRLQG--TIPYAGHLFQL 450 (541)
Q Consensus 375 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L 450 (541)
.+..|+.+++.++.++. ...+..+++|++|.++.| ++...+.-....+++|+.+++++|++.. .......+.+|
T Consensus 41 ~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 34455555555555431 234556666677777666 4443333333345667777777766652 12224455556
Q ss_pred ceEeccCCcCCCCC---CccccCCCCccEeeCC
Q 036588 451 QWLDLSDNQLSGSL---PSFKFKMPLLQFLDLS 480 (541)
Q Consensus 451 ~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~ 480 (541)
.+|++..|..+... ...+.-+|+|++|+-.
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 66666666444311 1123345566655533
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.61 E-value=0.0008 Score=58.44 Aligned_cols=86 Identities=23% Similarity=0.215 Sum_probs=47.9
Q ss_pred cccccCcceEEEecCc--cccccCCccccCCCCccEEEeccCcccc-cCCccccccCCCcEEEccCceeeeeccC----C
Q 036588 132 WDHTKRNWQQLYLSKN--MFYGEIPSDIANCSYLRILVLQFNNFSG-AIPKEISNLTKLEKLDLQYNKLQGTIPY----A 204 (541)
Q Consensus 132 ~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~----~ 204 (541)
.+..+++|++|.++.| .+...+......+|+|+++++++|++.. .....+.++.+|..|++.+|..+..... +
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf 139 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVF 139 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHH
Confidence 3444455566666666 4443444444566888888888887763 1122345566677777777655432211 3
Q ss_pred CCcCCCCEEECCC
Q 036588 205 GHLYQLQWLDLSD 217 (541)
Q Consensus 205 ~~~~~L~~L~l~~ 217 (541)
..+++|++|+-.+
T Consensus 140 ~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 140 LLLPSLKYLDGCD 152 (260)
T ss_pred HHhhhhccccccc
Confidence 4455566555433
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.90 E-value=0.00036 Score=58.01 Aligned_cols=82 Identities=22% Similarity=0.086 Sum_probs=34.6
Q ss_pred CcEEEccccccccccC-CCcccCCcceEeccCCcCCC-C-CCccccCCCCccEeeCCCCccccccCcccccCCcccceee
Q 036588 427 LEKLDLQYNRLQGTIP-YAGHLFQLQWLDLSDNQLSG-S-LPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELY 503 (541)
Q Consensus 427 L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~-~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 503 (541)
++.++-+++.+....- .+..++.++.|.+..|.-.+ - +...-+-.++|+.|++++|.-.++-....+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 4444444444432111 13444455555555553221 0 0111112355555555555443443334444455555555
Q ss_pred eccce
Q 036588 504 LSNNM 508 (541)
Q Consensus 504 l~~~~ 508 (541)
+.+-+
T Consensus 183 l~~l~ 187 (221)
T KOG3864|consen 183 LYDLP 187 (221)
T ss_pred hcCch
Confidence 54433
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.47 E-value=0.012 Score=29.98 Aligned_cols=21 Identities=48% Similarity=0.740 Sum_probs=13.2
Q ss_pred CeEEEEecCCcceeeeCCcccC
Q 036588 22 RVTALNISGLNLTVTIPSELGN 43 (541)
Q Consensus 22 ~l~~L~l~~~~i~~~~~~~~~~ 43 (541)
+|++|++++|+++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3667777777777 45555654
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.61 E-value=0.0034 Score=52.37 Aligned_cols=82 Identities=17% Similarity=0.086 Sum_probs=53.5
Q ss_pred cCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccC---CCcccCCcceEeccCC-cCCCCCCccccCCCCccEe
Q 036588 402 YLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIP---YAGHLFQLQWLDLSDN-QLSGSLPSFKFKMPLLQFL 477 (541)
Q Consensus 402 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L 477 (541)
.++.++-+++.+.....+.+..+++++.|.+.+|+..+.-- .-+..++|+.|++++| .|++.....+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 34556666666665666666677777777777776532211 1234677888888877 5666666677788888888
Q ss_pred eCCCCc
Q 036588 478 DLSSNR 483 (541)
Q Consensus 478 ~l~~~~ 483 (541)
.+.+=+
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 776543
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.21 E-value=0.029 Score=28.53 Aligned_cols=12 Identities=50% Similarity=0.401 Sum_probs=5.4
Q ss_pred cceeeeccceec
Q 036588 499 LEELYLSNNMFY 510 (541)
Q Consensus 499 L~~L~l~~~~~~ 510 (541)
|++|++++|.++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.50 E-value=0.038 Score=26.02 Aligned_cols=17 Identities=29% Similarity=0.514 Sum_probs=7.9
Q ss_pred cccceEEeecccccccCC
Q 036588 521 SYLRILVVQFNNFSGAIP 538 (541)
Q Consensus 521 ~~L~~L~l~~~~~~~~~p 538 (541)
++|+.|++++|++. ++|
T Consensus 1 ~~L~~L~l~~n~L~-~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT-SLP 17 (17)
T ss_dssp TT-SEEEETSS--S-SE-
T ss_pred CccCEEECCCCCCC-CCc
Confidence 35666777777653 554
No 76
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=92.78 E-value=0.056 Score=33.17 Aligned_cols=17 Identities=59% Similarity=1.539 Sum_probs=11.8
Q ss_pred CCCCC--CCccccceeeeC
Q 036588 1 NWNTS--SSVCNWTGITCD 17 (541)
Q Consensus 1 ~~~~~--~~~~~~~~~~~~ 17 (541)
+|+.. .++|.|.|++|+
T Consensus 25 ~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 25 SWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp T--TT--S-CCCSTTEEE-
T ss_pred cCCCcCCCCCeeeccEEeC
Confidence 58887 799999999995
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.09 E-value=0.011 Score=50.53 Aligned_cols=90 Identities=14% Similarity=0.197 Sum_probs=66.3
Q ss_pred eCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccccccCccCCccCCC
Q 036588 37 IPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSS 116 (541)
Q Consensus 37 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 116 (541)
....+..+...+.||++.+.+- .+...|..++.|..|+++.+.+ .-.|..+.. ...++.+++..|..+ ..|..+++
T Consensus 34 ~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~-~~~~~d~~q-~~e~~~~~~~~n~~~-~~p~s~~k 109 (326)
T KOG0473|consen 34 PVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQI-KFLPKDAKQ-QRETVNAASHKNNHS-QQPKSQKK 109 (326)
T ss_pred chhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhH-hhChhhHHH-HHHHHHHHhhccchh-hCCccccc
Confidence 3445677777888888887765 5666777777888888888877 566777766 777788888777766 67888888
Q ss_pred CCCCcEEecCCCcc
Q 036588 117 CKRLRETSLSLNDF 130 (541)
Q Consensus 117 l~~L~~l~~~~~~~ 130 (541)
.+++++++...+++
T Consensus 110 ~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 110 EPHPKKNEQKKTEF 123 (326)
T ss_pred cCCcchhhhccCcc
Confidence 88888877766654
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=89.36 E-value=0.002 Score=63.34 Aligned_cols=84 Identities=29% Similarity=0.277 Sum_probs=38.5
Q ss_pred CcEEeccCccccCC----CCcccCCCCcceEEEcccCcCcCcCChhhhcCC----CCccEEEccCcccccCC----CcCC
Q 036588 330 LQWLDLSDNQLSGS----LPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNL----PFLEELYLSNNMFYGEI----PSDT 397 (541)
Q Consensus 330 L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~----~~~~ 397 (541)
+..+.+.+|.+... +...+...+.|..|++++|.+.+.........+ ..++.|.+..|.+.... ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 55566666655432 222333456666666666665433222222211 23444555555444221 1223
Q ss_pred cCCccCCeEEcccCCC
Q 036588 398 QNCSYLRILVLKFNNF 413 (541)
Q Consensus 398 ~~~~~L~~L~l~~~~~ 413 (541)
...+.++.++++.|.+
T Consensus 169 ~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccchhHHHHHhccc
Confidence 3345555555555544
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.88 E-value=0.12 Score=26.91 Aligned_cols=16 Identities=44% Similarity=0.526 Sum_probs=7.1
Q ss_pred CCCcEecccccccCCc
Q 036588 45 SSLQTLDLSFNWFSGS 60 (541)
Q Consensus 45 ~~L~~L~l~~~~~~~~ 60 (541)
++|++|+|++|.+++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 4555555555555433
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.20 E-value=0.013 Score=50.12 Aligned_cols=87 Identities=22% Similarity=0.197 Sum_probs=75.2
Q ss_pred CCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEe
Q 036588 20 TYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESL 99 (541)
Q Consensus 20 ~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 99 (541)
+.++++||++.+..- -+...|+-++.+..||++.+.+. ..|..+.....+++++..+|.. ...|.++.. .++++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~-~~~p~s~~k-~~~~k~~ 116 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNH-SQQPKSQKK-EPHPKKN 116 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccch-hhCCccccc-cCCcchh
Confidence 568999999998887 45667899999999999999987 8999999999999999998877 588888888 9999999
Q ss_pred eccccccCccC
Q 036588 100 FLKSNMFHGKI 110 (541)
Q Consensus 100 ~l~~~~~~~~~ 110 (541)
+..++.+....
T Consensus 117 e~k~~~~~~~~ 127 (326)
T KOG0473|consen 117 EQKKTEFFRKL 127 (326)
T ss_pred hhccCcchHHH
Confidence 99988766443
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.77 E-value=0.62 Score=24.68 Aligned_cols=12 Identities=33% Similarity=0.542 Sum_probs=5.5
Q ss_pred CCcEEEeecCcc
Q 036588 70 SLLSINFINNAL 81 (541)
Q Consensus 70 ~L~~L~l~~~~~ 81 (541)
+|++|++.+|.+
T Consensus 3 ~L~~L~L~~N~l 14 (26)
T smart00369 3 NLRELDLSNNQL 14 (26)
T ss_pred CCCEEECCCCcC
Confidence 444444444444
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.77 E-value=0.62 Score=24.68 Aligned_cols=12 Identities=33% Similarity=0.542 Sum_probs=5.5
Q ss_pred CCcEEEeecCcc
Q 036588 70 SLLSINFINNAL 81 (541)
Q Consensus 70 ~L~~L~l~~~~~ 81 (541)
+|++|++.+|.+
T Consensus 3 ~L~~L~L~~N~l 14 (26)
T smart00370 3 NLRELDLSNNQL 14 (26)
T ss_pred CCCEEECCCCcC
Confidence 444444444444
No 83
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=84.54 E-value=0.0068 Score=59.76 Aligned_cols=88 Identities=28% Similarity=0.173 Sum_probs=46.8
Q ss_pred CCCCccEEEccCcccccC----CCcCCcCCcc-CCeEEcccCCCCCccch----hhhcc-CCCcEEEccccccccccCC-
Q 036588 375 NLPFLEELYLSNNMFYGE----IPSDTQNCSY-LRILVLKFNNFPGAIPK----EISNL-TKLEKLDLQYNRLQGTIPY- 443 (541)
Q Consensus 375 ~~~~L~~L~l~~~~~~~~----~~~~~~~~~~-L~~L~l~~~~~~~~~~~----~l~~~-~~L~~L~l~~~~~~~~~~~- 443 (541)
...+++++.+.+|.++.. ....+...++ ++.+++..|.+.+.... .+..+ ..++.++++.|++......
T Consensus 202 ~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~ 281 (478)
T KOG4308|consen 202 PLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRD 281 (478)
T ss_pred ccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHH
Confidence 345566666666665421 1123344444 56677777766544222 22333 4556777777766532221
Q ss_pred ----CcccCCcceEeccCCcCCC
Q 036588 444 ----AGHLFQLQWLDLSDNQLSG 462 (541)
Q Consensus 444 ----~~~~~~L~~L~l~~~~~~~ 462 (541)
...++.++.+.+..+++.+
T Consensus 282 L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 282 LAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHhhhHHHHHhhcccCcccc
Confidence 3445567777777766654
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=73.24 E-value=2.1 Score=22.72 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=13.1
Q ss_pred cccceEEeecccccccCCC
Q 036588 521 SYLRILVVQFNNFSGAIPK 539 (541)
Q Consensus 521 ~~L~~L~l~~~~~~~~~p~ 539 (541)
++|+.|++++|++. ++|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 46777888888775 7775
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=67.82 E-value=4.2 Score=21.45 Aligned_cols=14 Identities=43% Similarity=0.373 Sum_probs=8.6
Q ss_pred CCCccEeeCCCCcc
Q 036588 471 MPLLQFLDLSSNRL 484 (541)
Q Consensus 471 ~~~L~~L~l~~~~~ 484 (541)
+|+|+.|++++|..
T Consensus 1 c~~L~~L~l~~C~~ 14 (26)
T smart00367 1 CPNLRELDLSGCTN 14 (26)
T ss_pred CCCCCEeCCCCCCC
Confidence 35666666666654
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=60.76 E-value=4.9 Score=21.73 Aligned_cols=13 Identities=54% Similarity=0.567 Sum_probs=6.6
Q ss_pred CCcEecccccccC
Q 036588 46 SLQTLDLSFNWFS 58 (541)
Q Consensus 46 ~L~~L~l~~~~~~ 58 (541)
+|++|||++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555444
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=55.24 E-value=9.6 Score=20.28 Aligned_cols=14 Identities=43% Similarity=0.518 Sum_probs=7.2
Q ss_pred CCCcEecccccccC
Q 036588 45 SSLQTLDLSFNWFS 58 (541)
Q Consensus 45 ~~L~~L~l~~~~~~ 58 (541)
++|+.|++++|+++
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555543
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=52.91 E-value=6.7 Score=38.83 Aligned_cols=64 Identities=23% Similarity=0.132 Sum_probs=31.2
Q ss_pred cCCccCCeEEcccCCCCCcc--chhhhccCCCcEEEcccc--ccccccCCC--cccCCcceEeccCCcCCC
Q 036588 398 QNCSYLRILVLKFNNFPGAI--PKEISNLTKLEKLDLQYN--RLQGTIPYA--GHLFQLQWLDLSDNQLSG 462 (541)
Q Consensus 398 ~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~--~~~~~~~~~--~~~~~L~~L~l~~~~~~~ 462 (541)
.+.+.+..+.+++|++.... ...-..-++|+.|+|++| .+. ....+ .....|++|-+.||++.+
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~-~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS-SESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc-chhhhhhhcCCCHHHeeecCCcccc
Confidence 34556666677777654321 111123466677777766 222 11111 123445666666666543
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=40.53 E-value=18 Score=36.09 Aligned_cols=13 Identities=38% Similarity=0.253 Sum_probs=6.9
Q ss_pred CcceEEEcccCcC
Q 036588 352 PLLQFLDLSSNRL 364 (541)
Q Consensus 352 ~~L~~L~l~~~~~ 364 (541)
..|++|-+.||++
T Consensus 270 l~Leel~l~GNPl 282 (585)
T KOG3763|consen 270 LPLEELVLEGNPL 282 (585)
T ss_pred CCHHHeeecCCcc
Confidence 4455555555554
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=35.03 E-value=1.8e+02 Score=28.78 Aligned_cols=110 Identities=17% Similarity=0.097 Sum_probs=52.8
Q ss_pred CCCCEEECCCCcccCCCCc--ccCCCCCccEEeccCCcccCc-----CCh--h-hhccCCCCcEEEecCccccccC---C
Q 036588 208 YQLQWLDLSDNQLSGSLPS--FKFKMPLLQFLDLSSNRLSAE-----LPT--N-VFHNLPFLEELYLSNNMFYGEI---P 274 (541)
Q Consensus 208 ~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~-----~~~--~-~~~~~~~L~~L~l~~~~~~~~~---~ 274 (541)
..+++|.+.+++..+.... ...+.+..+.+.+........ ... . .....--+..+.++.+...... .
T Consensus 354 ~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~i 433 (553)
T KOG4242|consen 354 QRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAI 433 (553)
T ss_pred eeeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHH
Confidence 3477777777766543332 233345566666554321000 000 0 0011223455566655443211 1
Q ss_pred CCCcCcccccEEEecccccCCC----ccccccccCCccEEEeeCCcc
Q 036588 275 SDTANCSYLRILVLRFNNFSGA----IPKEISNLTKLEKLDLQYNRL 317 (541)
Q Consensus 275 ~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~ 317 (541)
......+.+.+|+++++..... ++..+..-.+++.+..+.+..
T Consensus 434 n~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 434 NKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred HhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 1233457788899998876543 333333344555555555543
No 91
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=21.61 E-value=1.2e+02 Score=26.45 Aligned_cols=35 Identities=14% Similarity=0.049 Sum_probs=15.0
Q ss_pred cCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccc
Q 036588 447 LFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLS 485 (541)
Q Consensus 447 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 485 (541)
+.+++--.+.+|.+.+ |.. --.+|+--++.++.+.
T Consensus 195 caN~eGA~L~gcNfed--ps~--~kaNLeganLkG~~~e 229 (302)
T KOG1665|consen 195 CANAEGASLKGCNFED--PSG--LKANLEGANLKGADME 229 (302)
T ss_pred ecccccccccCcCCCC--ccc--hhcccccccccccccc
Confidence 3444444555555432 111 1124455555555443
Done!