Query 036588
Match_columns 541
No_of_seqs 264 out of 3033
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 05:11:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036588.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036588hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.9E-61 6.4E-66 509.6 41.0 535 1-540 32-723 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.7E-52 5.9E-57 441.3 37.4 509 20-533 125-739 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-50 3.8E-55 424.4 45.3 513 20-535 24-598 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 7.7E-50 2.6E-54 418.0 41.9 516 19-537 47-625 (680)
5 3t6q_A CD180 antigen; protein- 100.0 1.6E-50 5.3E-55 417.8 33.7 509 20-537 32-563 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 3.5E-49 1.2E-53 407.6 33.6 505 20-538 31-562 (606)
7 3t6q_A CD180 antigen; protein- 100.0 1.1E-47 3.7E-52 396.5 35.7 506 24-539 15-541 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 5.2E-47 1.8E-51 391.4 31.7 503 24-540 14-539 (606)
9 4eco_A Uncharacterized protein 100.0 2.2E-47 7.7E-52 393.1 23.4 476 1-534 59-632 (636)
10 3j0a_A TOLL-like receptor 5; m 100.0 4.4E-45 1.5E-49 388.8 41.3 507 9-535 14-561 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 2.1E-45 7.2E-50 377.0 31.7 492 20-539 27-536 (570)
12 4ecn_A Leucine-rich repeat pro 100.0 2E-44 6.8E-49 376.4 26.2 491 1-529 285-859 (876)
13 2z81_A CD282 antigen, TOLL-lik 100.0 7.5E-44 2.6E-48 363.5 28.4 473 8-536 3-512 (549)
14 3j0a_A TOLL-like receptor 5; m 100.0 4.8E-42 1.6E-46 365.5 37.5 500 24-540 7-545 (844)
15 2z63_A TOLL-like receptor 4, v 100.0 1.8E-42 6.2E-47 355.2 32.6 482 25-539 11-512 (570)
16 2z81_A CD282 antigen, TOLL-lik 100.0 1.7E-40 5.9E-45 338.6 29.2 457 25-539 9-491 (549)
17 2z7x_B TOLL-like receptor 1, v 100.0 7.1E-41 2.4E-45 338.9 23.0 451 24-535 3-482 (520)
18 4eco_A Uncharacterized protein 100.0 2.5E-40 8.6E-45 340.7 25.9 453 45-534 81-600 (636)
19 2z7x_B TOLL-like receptor 1, v 100.0 1.3E-39 4.4E-44 329.6 26.9 436 20-487 20-483 (520)
20 4g8a_A TOLL-like receptor 4; l 100.0 2.3E-38 7.7E-43 329.5 36.1 503 21-534 52-580 (635)
21 4ecn_A Leucine-rich repeat pro 100.0 2.8E-37 9.7E-42 322.6 25.9 389 137-535 323-841 (876)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.4E-36 4.8E-41 309.8 27.0 449 22-486 32-511 (562)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.7E-37 1.3E-41 314.1 22.6 456 42-536 28-512 (562)
24 4g8a_A TOLL-like receptor 4; l 100.0 1.9E-35 6.4E-40 307.5 33.6 500 29-540 39-561 (635)
25 3v47_A TOLL-like receptor 5B a 100.0 3E-35 1E-39 292.7 23.8 358 22-415 31-409 (455)
26 3v47_A TOLL-like receptor 5B a 100.0 2.4E-34 8.2E-39 286.2 27.4 375 26-438 15-408 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 4.4E-34 1.5E-38 281.2 23.7 419 44-539 10-434 (454)
28 1o6v_A Internalin A; bacterial 100.0 6.8E-33 2.3E-37 275.6 29.8 345 136-511 45-389 (466)
29 1jl5_A Outer protein YOPM; leu 100.0 2.7E-33 9.3E-38 275.6 26.0 405 20-489 10-433 (454)
30 1o6v_A Internalin A; bacterial 100.0 6.7E-32 2.3E-36 268.5 31.3 343 116-486 44-389 (466)
31 1ogq_A PGIP-2, polygalacturona 100.0 8.3E-33 2.8E-37 259.4 20.8 268 1-292 26-302 (313)
32 3bz5_A Internalin-J, INLJ; leu 100.0 2.7E-31 9.1E-36 261.7 27.2 234 56-336 29-262 (457)
33 2id5_A Lingo-1, leucine rich r 100.0 1.5E-31 5.2E-36 267.3 25.3 300 21-341 32-333 (477)
34 3o6n_A APL1; leucine-rich repe 100.0 2.7E-31 9.1E-36 258.2 24.8 308 21-365 45-352 (390)
35 2id5_A Lingo-1, leucine rich r 100.0 1E-30 3.4E-35 261.4 26.1 319 188-511 14-334 (477)
36 3bz5_A Internalin-J, INLJ; leu 100.0 2.1E-30 7.4E-35 255.2 27.8 381 31-506 28-408 (457)
37 4fmz_A Internalin; leucine ric 100.0 2.7E-30 9.1E-35 247.3 25.0 307 181-534 40-346 (347)
38 3oja_B Anopheles plasmodium-re 100.0 2.5E-30 8.6E-35 264.9 24.8 309 21-366 51-359 (597)
39 4fmz_A Internalin; leucine ric 100.0 3.5E-29 1.2E-33 239.5 27.8 299 139-484 46-345 (347)
40 3o6n_A APL1; leucine-rich repe 100.0 1.2E-29 4.1E-34 246.5 24.9 308 159-484 43-351 (390)
41 3oja_B Anopheles plasmodium-re 100.0 1.2E-28 4E-33 252.5 24.7 309 159-485 49-358 (597)
42 1z7x_W Ribonuclease inhibitor; 100.0 3.1E-31 1.1E-35 264.3 -3.4 377 20-415 2-441 (461)
43 1xku_A Decorin; proteoglycan, 100.0 4.6E-27 1.6E-31 222.9 24.6 289 209-532 32-330 (330)
44 2ft3_A Biglycan; proteoglycan, 100.0 2.2E-27 7.4E-32 225.2 22.1 268 257-532 54-331 (332)
45 3ogk_B Coronatine-insensitive 100.0 9.4E-30 3.2E-34 261.9 3.2 391 137-530 112-547 (592)
46 4fcg_A Uncharacterized protein 100.0 1.4E-27 4.7E-32 225.2 17.5 250 3-292 55-312 (328)
47 1xku_A Decorin; proteoglycan, 100.0 3.4E-26 1.2E-30 216.9 27.0 290 185-508 31-330 (330)
48 2ft3_A Biglycan; proteoglycan, 100.0 8.7E-27 3E-31 221.0 22.4 265 22-317 34-306 (332)
49 1ogq_A PGIP-2, polygalacturona 99.9 2.1E-27 7.3E-32 222.6 16.9 248 45-316 50-302 (313)
50 3ogk_B Coronatine-insensitive 99.9 1.2E-29 4E-34 261.2 1.3 448 6-482 39-548 (592)
51 1z7x_W Ribonuclease inhibitor; 99.9 1.2E-30 4E-35 260.2 -8.1 374 137-510 3-440 (461)
52 2z80_A TOLL-like receptor 2, v 99.9 7.9E-26 2.7E-30 216.4 16.5 223 2-244 23-261 (353)
53 2p1m_B Transport inhibitor res 99.9 8.7E-29 3E-33 254.9 -5.0 395 135-533 103-543 (594)
54 2p1m_B Transport inhibitor res 99.9 1.8E-28 6E-33 252.6 -3.5 396 43-458 103-541 (594)
55 2z66_A Variable lymphocyte rec 99.9 2.1E-25 7.3E-30 209.0 16.0 241 8-270 6-261 (306)
56 2z80_A TOLL-like receptor 2, v 99.9 1E-25 3.6E-30 215.6 13.6 252 258-510 53-314 (353)
57 2z66_A Variable lymphocyte rec 99.9 1.9E-24 6.4E-29 202.6 18.9 264 257-521 28-298 (306)
58 4fcg_A Uncharacterized protein 99.9 5.1E-24 1.7E-28 200.7 19.1 234 281-534 81-314 (328)
59 3zyj_A Leucine-rich repeat-con 99.9 1.8E-23 6.1E-28 206.2 22.3 245 259-510 45-292 (440)
60 3zyi_A Leucine-rich repeat-con 99.9 9.9E-24 3.4E-28 208.8 20.6 246 47-318 56-303 (452)
61 3zyi_A Leucine-rich repeat-con 99.9 2.4E-23 8.1E-28 206.0 22.4 227 281-533 75-302 (452)
62 3zyj_A Leucine-rich repeat-con 99.9 2.6E-23 8.9E-28 205.0 21.8 245 24-317 46-291 (440)
63 1ozn_A Reticulon 4 receptor; N 99.9 9.1E-24 3.1E-28 195.7 17.3 206 232-439 32-239 (285)
64 1ozn_A Reticulon 4 receptor; N 99.9 9.9E-24 3.4E-28 195.4 17.4 250 257-531 32-284 (285)
65 1wwl_A Monocyte differentiatio 99.9 2.2E-25 7.4E-30 209.1 3.0 250 40-318 38-309 (312)
66 2o6q_A Variable lymphocyte rec 99.9 6.1E-23 2.1E-27 188.2 19.1 215 6-244 2-217 (270)
67 3o53_A Protein LRIM1, AGAP0063 99.9 5.3E-25 1.8E-29 207.0 4.7 263 234-510 12-275 (317)
68 3g06_A SSPH2 (leucine-rich rep 99.9 1E-22 3.5E-27 206.2 21.1 278 1-319 14-298 (622)
69 3o53_A Protein LRIM1, AGAP0063 99.9 2.6E-24 8.9E-29 202.2 7.5 257 213-482 15-272 (317)
70 1wwl_A Monocyte differentiatio 99.9 2.5E-24 8.4E-29 201.9 5.8 248 65-341 39-309 (312)
71 3g06_A SSPH2 (leucine-rich rep 99.9 2.1E-21 7.1E-26 196.7 25.3 265 208-517 40-304 (622)
72 3oja_A Leucine-rich immune mol 99.9 8.5E-23 2.9E-27 202.9 9.2 235 257-505 34-270 (487)
73 2z62_A TOLL-like receptor 4, v 99.9 3.6E-21 1.2E-25 177.3 18.3 203 22-244 29-236 (276)
74 2o6q_A Variable lymphocyte rec 99.9 2.4E-20 8.1E-25 171.0 20.9 202 306-511 17-219 (270)
75 3rfs_A Internalin B, repeat mo 99.9 6E-21 2E-25 175.1 16.2 226 283-522 21-247 (272)
76 3oja_A Leucine-rich immune mol 99.9 8.4E-22 2.9E-26 195.8 10.6 237 231-480 33-270 (487)
77 2z62_A TOLL-like receptor 4, v 99.9 8.5E-21 2.9E-25 174.8 16.6 205 305-512 28-239 (276)
78 3rfs_A Internalin B, repeat mo 99.8 2.5E-20 8.7E-25 170.9 17.2 200 279-489 39-239 (272)
79 2ast_B S-phase kinase-associat 99.8 1.2E-22 4.1E-27 193.2 -0.4 213 5-242 33-257 (336)
80 2ast_B S-phase kinase-associat 99.8 5.7E-22 2E-26 188.5 4.3 250 259-539 49-311 (336)
81 1p9a_G Platelet glycoprotein I 99.8 3E-19 1E-23 164.9 19.0 202 301-510 6-208 (290)
82 2xwt_C Thyrotropin receptor; s 99.8 2E-19 6.9E-24 161.7 16.2 198 21-241 31-235 (239)
83 3m19_A Variable lymphocyte rec 99.8 2.8E-19 9.4E-24 161.9 16.2 189 7-221 3-192 (251)
84 4glp_A Monocyte differentiatio 99.8 1E-19 3.5E-24 170.4 13.5 224 306-535 65-308 (310)
85 1p9a_G Platelet glycoprotein I 99.8 9.4E-19 3.2E-23 161.5 19.7 176 282-460 32-207 (290)
86 3goz_A Leucine-rich repeat-con 99.8 9.8E-21 3.3E-25 181.4 5.5 252 25-296 2-299 (362)
87 3m19_A Variable lymphocyte rec 99.8 1.9E-18 6.4E-23 156.4 18.0 178 328-510 14-192 (251)
88 1h6u_A Internalin H; cell adhe 99.8 9.6E-19 3.3E-23 163.2 16.0 195 301-511 37-231 (308)
89 2ca6_A RAN GTPase-activating p 99.8 3.5E-21 1.2E-25 186.5 -0.5 260 22-297 10-319 (386)
90 2xwt_C Thyrotropin receptor; s 99.8 9.8E-19 3.3E-23 157.2 15.3 154 156-315 75-236 (239)
91 1h6u_A Internalin H; cell adhe 99.8 1.5E-18 5E-23 162.0 16.4 195 277-486 37-231 (308)
92 4glp_A Monocyte differentiatio 99.8 5.3E-19 1.8E-23 165.5 13.4 221 21-246 64-308 (310)
93 3goz_A Leucine-rich repeat-con 99.8 4.1E-20 1.4E-24 177.1 3.6 225 49-292 2-264 (362)
94 2ca6_A RAN GTPase-activating p 99.8 7.6E-21 2.6E-25 184.1 -1.5 242 273-536 24-318 (386)
95 2o6s_A Variable lymphocyte rec 99.7 1.3E-17 4.5E-22 146.2 13.9 193 331-539 10-203 (208)
96 4ay9_X Follicle-stimulating ho 99.7 3.5E-17 1.2E-21 155.8 17.8 169 26-216 14-185 (350)
97 2o6s_A Variable lymphocyte rec 99.7 2.9E-17 9.8E-22 144.1 15.7 156 377-540 28-184 (208)
98 4ay9_X Follicle-stimulating ho 99.7 6.5E-17 2.2E-21 153.9 16.4 239 284-531 12-256 (350)
99 4fs7_A Uncharacterized protein 99.7 6.8E-16 2.3E-20 149.5 21.8 335 32-430 58-393 (394)
100 3e6j_A Variable lymphocyte rec 99.7 1.4E-16 4.9E-21 141.5 15.7 161 1-197 11-171 (229)
101 3cvr_A Invasion plasmid antige 99.7 3.5E-17 1.2E-21 163.7 11.8 199 2-249 36-247 (571)
102 2v9t_B SLIT homolog 2 protein 99.7 3.9E-16 1.3E-20 137.7 14.1 100 22-122 33-132 (220)
103 1h6t_A Internalin B; cell adhe 99.7 2.7E-16 9.4E-21 145.2 13.7 171 301-484 42-212 (291)
104 1h6t_A Internalin B; cell adhe 99.7 3.1E-16 1E-20 144.9 13.7 175 323-512 41-215 (291)
105 3cvr_A Invasion plasmid antige 99.7 3.7E-16 1.3E-20 156.3 14.4 187 306-520 60-253 (571)
106 4fs7_A Uncharacterized protein 99.7 3.2E-15 1.1E-19 144.8 20.6 308 152-502 85-393 (394)
107 3sb4_A Hypothetical leucine ri 99.7 6.2E-17 2.1E-21 152.7 7.8 103 376-503 225-327 (329)
108 4ezg_A Putative uncharacterize 99.7 3.8E-16 1.3E-20 135.5 11.4 152 66-244 41-193 (197)
109 4ezg_A Putative uncharacterize 99.7 3.5E-16 1.2E-20 135.6 10.6 153 375-535 42-195 (197)
110 3sb4_A Hypothetical leucine ri 99.7 4.7E-16 1.6E-20 146.7 12.2 285 161-454 25-327 (329)
111 2v9t_B SLIT homolog 2 protein 99.6 1.6E-15 5.3E-20 133.8 13.4 152 24-198 14-165 (220)
112 1m9s_A Internalin B; cell inva 99.6 2.7E-15 9.2E-20 151.9 16.4 171 301-484 39-209 (605)
113 1m9s_A Internalin B; cell inva 99.6 1E-15 3.5E-20 154.9 13.3 169 41-221 39-210 (605)
114 3e6j_A Variable lymphocyte rec 99.6 4.8E-15 1.6E-19 131.7 15.7 151 355-511 22-173 (229)
115 2v70_A SLIT-2, SLIT homolog 2 99.6 3.7E-15 1.3E-19 131.4 14.7 150 356-510 15-166 (220)
116 2xot_A Amphoterin-induced prot 99.6 6.9E-16 2.4E-20 147.4 10.2 175 331-510 21-202 (361)
117 1xeu_A Internalin C; cellular 99.6 1.3E-15 4.5E-20 138.3 10.7 165 330-510 21-185 (263)
118 4fdw_A Leucine rich hypothetic 99.6 3E-14 1E-18 137.0 20.7 263 231-532 112-381 (401)
119 1dce_A Protein (RAB geranylger 99.6 3E-17 1E-21 165.2 -1.2 205 41-263 345-566 (567)
120 2v70_A SLIT-2, SLIT homolog 2 99.6 8.9E-15 3E-19 129.0 14.7 156 331-489 14-170 (220)
121 2xot_A Amphoterin-induced prot 99.6 2.5E-15 8.5E-20 143.6 11.6 174 24-220 21-201 (361)
122 4fdw_A Leucine rich hypothetic 99.6 4.7E-14 1.6E-18 135.6 20.0 215 206-433 111-331 (401)
123 1xeu_A Internalin C; cellular 99.6 5.3E-15 1.8E-19 134.2 10.8 166 43-220 17-184 (263)
124 2ell_A Acidic leucine-rich nuc 99.6 7.8E-15 2.7E-19 123.7 8.5 136 401-539 24-164 (168)
125 2ell_A Acidic leucine-rich nuc 99.5 2.3E-14 8E-19 120.7 9.9 133 20-174 23-160 (168)
126 4gt6_A Cell surface protein; l 99.5 3.4E-12 1.2E-16 123.4 26.0 159 33-215 51-212 (394)
127 4gt6_A Cell surface protein; l 99.5 3E-12 1E-16 123.8 25.0 276 150-436 76-368 (394)
128 2je0_A Acidic leucine-rich nuc 99.5 3.2E-14 1.1E-18 117.2 6.4 100 20-122 16-117 (149)
129 1w8a_A SLIT protein; signaling 99.5 2.2E-13 7.4E-18 117.3 11.7 127 380-510 11-139 (192)
130 2je0_A Acidic leucine-rich nuc 99.5 2.5E-14 8.5E-19 117.9 5.1 128 401-529 17-148 (149)
131 1dce_A Protein (RAB geranylger 99.5 9.6E-16 3.3E-20 154.2 -4.6 194 20-239 348-567 (567)
132 4b8c_D Glucose-repressible alc 99.5 1.3E-14 4.5E-19 150.7 3.7 202 7-242 161-369 (727)
133 2o6r_A Variable lymphocyte rec 99.4 5.9E-13 2E-17 113.1 11.8 122 8-130 6-136 (177)
134 1w8a_A SLIT protein; signaling 99.4 5.1E-13 1.7E-17 115.0 11.5 128 24-174 11-139 (192)
135 2wfh_A SLIT homolog 2 protein 99.4 9.6E-13 3.3E-17 113.1 12.4 127 24-174 13-139 (193)
136 2o6r_A Variable lymphocyte rec 99.4 1.6E-12 5.6E-17 110.4 12.3 128 379-510 9-137 (177)
137 1a9n_A U2A', U2A'; complex (nu 99.4 2.5E-13 8.7E-18 115.2 6.6 130 375-509 17-152 (176)
138 2wfh_A SLIT homolog 2 protein 99.4 3.3E-12 1.1E-16 109.8 13.1 127 48-198 13-139 (193)
139 4b8c_D Glucose-repressible alc 99.4 1.2E-13 4.1E-18 143.5 3.8 116 346-465 218-333 (727)
140 4h09_A Hypothetical leucine ri 99.3 2.4E-10 8.1E-15 110.0 23.4 314 180-521 41-356 (379)
141 1a9n_A U2A', U2A'; complex (nu 99.3 2.8E-12 9.4E-17 108.7 8.5 134 348-486 15-154 (176)
142 4h09_A Hypothetical leucine ri 99.3 3.4E-10 1.2E-14 108.9 23.0 78 345-425 279-356 (379)
143 1ds9_A Outer arm dynein; leuci 99.3 4E-14 1.4E-18 122.8 -4.3 128 22-174 19-153 (198)
144 1ds9_A Outer arm dynein; leuci 99.2 2.5E-14 8.5E-19 124.1 -8.7 111 372-486 43-154 (198)
145 3g39_A Variable lymphocyte rec 99.2 4E-11 1.4E-15 100.6 10.1 105 23-131 11-115 (170)
146 2r9u_A Variable lymphocyte rec 99.2 5.4E-11 1.8E-15 100.2 10.2 104 24-131 15-118 (174)
147 3g39_A Variable lymphocyte rec 99.2 9.8E-11 3.4E-15 98.3 10.8 104 403-510 11-115 (170)
148 2r9u_A Variable lymphocyte rec 99.2 1E-10 3.5E-15 98.4 10.4 103 404-510 15-118 (174)
149 3un9_A NLR family member X1; l 99.1 9.5E-12 3.3E-16 118.4 -0.1 86 137-222 155-253 (372)
150 3un9_A NLR family member X1; l 99.1 3.6E-12 1.2E-16 121.3 -4.4 155 45-199 72-253 (372)
151 2ifg_A High affinity nerve gro 98.8 9.2E-09 3.2E-13 97.5 9.6 101 27-131 14-116 (347)
152 2ifg_A High affinity nerve gro 98.8 2.8E-08 9.6E-13 94.2 10.2 102 357-461 13-116 (347)
153 2ra8_A Uncharacterized protein 98.6 5.9E-09 2E-13 98.2 1.9 139 371-512 166-322 (362)
154 2ra8_A Uncharacterized protein 98.6 6.5E-09 2.2E-13 97.9 2.1 64 159-222 250-321 (362)
155 3e4g_A ATP synthase subunit S, 98.5 7.6E-09 2.6E-13 85.1 -1.2 85 448-532 61-150 (176)
156 3e4g_A ATP synthase subunit S, 98.3 1.8E-07 6E-12 77.0 1.3 81 46-126 62-147 (176)
157 1io0_A Tropomodulin; LRR prote 98.2 3.4E-07 1.2E-11 77.6 0.8 66 373-438 32-106 (185)
158 1io0_A Tropomodulin; LRR prote 98.1 3.4E-07 1.2E-11 77.6 0.3 115 396-510 31-164 (185)
159 3rw6_A Nuclear RNA export fact 98.0 4.6E-06 1.6E-10 74.2 5.3 64 42-108 167-234 (267)
160 3rw6_A Nuclear RNA export fact 97.9 2.8E-06 9.6E-11 75.6 1.8 83 66-168 167-258 (267)
161 1pgv_A TMD-1, tropomodulin TMD 96.5 0.00089 3E-08 56.1 1.8 67 372-438 36-111 (197)
162 1pgv_A TMD-1, tropomodulin TMD 96.3 0.00091 3.1E-08 56.0 0.8 82 400-481 40-135 (197)
163 3rfe_A Platelet glycoprotein I 95.0 0.026 8.9E-07 43.9 4.7 56 452-510 12-68 (130)
164 3rfe_A Platelet glycoprotein I 94.2 0.072 2.5E-06 41.4 5.3 35 70-105 32-66 (130)
165 2lz0_A Uncharacterized protein 82.3 1.7 5.7E-05 31.6 4.3 48 458-507 6-53 (100)
166 2lz0_A Uncharacterized protein 81.3 2.9 9.8E-05 30.3 5.3 43 367-410 10-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.9e-61 Score=509.56 Aligned_cols=535 Identities=35% Similarity=0.444 Sum_probs=401.7
Q ss_pred CCCCCCCccccceeeeCCCCCCeEEEEecCCcceee---eC-----------------------CcccCCCCCcEecccc
Q 036588 1 NWNTSSSVCNWTGITCDVRTYRVTALNISGLNLTVT---IP-----------------------SELGNLSSLQTLDLSF 54 (541)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~---~~-----------------------~~~~~l~~L~~L~l~~ 54 (541)
+|+.+.+||.|.|++|+ ..+|++|+++++.+.+. ++ +.|+++++|++|++++
T Consensus 32 ~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~ 109 (768)
T 3rgz_A 32 DWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR 109 (768)
T ss_dssp TCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCS
T ss_pred CCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCC
Confidence 69999999999999998 57999999999988775 33 5788889999999999
Q ss_pred cccCCccch--hhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccccccCccCCcc---CCCCCCCcEEecCCCc
Q 036588 55 NWFSGSIPA--SIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPST---LSSCKRLRETSLSLND 129 (541)
Q Consensus 55 ~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~l~~L~~l~~~~~~ 129 (541)
|.+.+.+|. .+.++++|++|++++|.+.+..|..+...+++|++|++++|.+++..+.. +.++++|++++++++.
T Consensus 110 n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~ 189 (768)
T 3rgz_A 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK 189 (768)
T ss_dssp SEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSE
T ss_pred CcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCc
Confidence 998877888 89999999999999998877777776455888888888888887666655 6777777777777775
Q ss_pred cc---cccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceeee-------
Q 036588 130 FF---WDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQG------- 199 (541)
Q Consensus 130 ~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~------- 199 (541)
+. ....+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+..++.+++|++|++++|.+.+
T Consensus 190 l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l 268 (768)
T 3rgz_A 190 ISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPL 268 (768)
T ss_dssp EESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCC
T ss_pred ccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcccc
Confidence 54 223456666777766666655554 6666666666666666655555555555555555555554432
Q ss_pred ---------------ecc-CCCC-cCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEE
Q 036588 200 ---------------TIP-YAGH-LYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEEL 262 (541)
Q Consensus 200 ---------------~~~-~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 262 (541)
..+ .+.. +++|++|++++|.+.+..|..+..+++|++|++++|.+.+.++...+..+++|+.|
T Consensus 269 ~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L 348 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 348 (768)
T ss_dssp TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEE
T ss_pred CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEE
Confidence 222 2333 36777777777777666777777777888888888777666776666777788888
Q ss_pred EecCccccccCCCCCcCcc-cccEEEec--------------------------ccccCCCccccccccCCccEEEeeCC
Q 036588 263 YLSNNMFYGEIPSDTANCS-YLRILVLR--------------------------FNNFSGAIPKEISNLTKLEKLDLQYN 315 (541)
Q Consensus 263 ~l~~~~~~~~~~~~~~~~~-~L~~L~l~--------------------------~~~~~~~~~~~l~~l~~L~~L~l~~~ 315 (541)
++++|.+.+..|..+..++ +|++|+++ +|.+....+..+..+++|+.|++++|
T Consensus 349 ~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 428 (768)
T 3rgz_A 349 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428 (768)
T ss_dssp ECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS
T ss_pred eCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCC
Confidence 8877777655665555443 44444444 44444344555666667777777777
Q ss_pred ccccccc-cccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCC
Q 036588 316 RLQGTIL-YVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIP 394 (541)
Q Consensus 316 ~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 394 (541)
.+....+ .+..+++|+.|++++|.+...++..+..+++|+.|++++|.+++.++.. +..+++|+.|++++|++.+..+
T Consensus 429 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~p 507 (768)
T 3rgz_A 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-LSNCTNLNWISLSNNRLTGEIP 507 (768)
T ss_dssp EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCCSCCC
T ss_pred cccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH-HhcCCCCCEEEccCCccCCcCC
Confidence 6654333 3666777777777777776666677777778888888887776544443 5578888888888888877777
Q ss_pred cCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCC-------------------------------
Q 036588 395 SDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY------------------------------- 443 (541)
Q Consensus 395 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~------------------------------- 443 (541)
..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|.
T Consensus 508 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (768)
T 3rgz_A 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTC
T ss_pred hHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccc
Confidence 7888888888888888888777788888888888888888876533321
Q ss_pred ----------------------------------------CcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCc
Q 036588 444 ----------------------------------------AGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNR 483 (541)
Q Consensus 444 ----------------------------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 483 (541)
+..+++|+.|++++|.+...+|..++.+++|+.|++++|.
T Consensus 588 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 667 (768)
T 3rgz_A 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 667 (768)
T ss_dssp CSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSC
T ss_pred cccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCc
Confidence 2234678899999999998999999999999999999999
Q ss_pred cccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeecccccccCCCC
Q 036588 484 LSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIPKE 540 (541)
Q Consensus 484 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~ 540 (541)
+.+.+| ..++.+++|+.|++++|++.+.+|+.+..+++|+.|++++|+++|.||+.
T Consensus 668 l~g~ip-~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 668 ISGSIP-DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp CCSCCC-GGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred cCCCCC-hHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 988888 67889999999999999999999999999999999999999999999964
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.7e-52 Score=441.33 Aligned_cols=509 Identities=35% Similarity=0.438 Sum_probs=394.9
Q ss_pred CCCeEEEEecCCcceeeeCCcc-cCCCCCcEecccccccCCccchh---hh----------------------hcCCCcE
Q 036588 20 TYRVTALNISGLNLTVTIPSEL-GNLSSLQTLDLSFNWFSGSIPAS---IF----------------------NMSSLLS 73 (541)
Q Consensus 20 ~~~l~~L~l~~~~i~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~---~~----------------------~l~~L~~ 73 (541)
.++|++|++++|.+++..|..+ .++++|++|++++|.+++..|.. +. ++++|++
T Consensus 125 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~ 204 (768)
T 3rgz_A 125 CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEF 204 (768)
T ss_dssp CTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCE
T ss_pred CCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCE
Confidence 4567777777776665555544 66666666666666665444444 33 4555555
Q ss_pred EEeecCccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCcccc---ccccCcceEEEecCcccc
Q 036588 74 INFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFW---DHTKRNWQQLYLSKNMFY 150 (541)
Q Consensus 74 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~ 150 (541)
|++++|.+.+..|. +.. +++|++|++++|.+.+..|..+.++++|++|+++++.+.. ...+++|++|++++|.+.
T Consensus 205 L~Ls~n~l~~~~~~-l~~-l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~ 282 (768)
T 3rgz_A 205 LDVSSNNFSTGIPF-LGD-CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFT 282 (768)
T ss_dssp EECCSSCCCSCCCB-CTT-CCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEE
T ss_pred EECcCCcCCCCCcc-ccc-CCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccC
Confidence 55555555444444 333 6666666666666665556666666666666666665541 114567777777777777
Q ss_pred ccCCccccCC-CCccEEEeccCcccccCCccccccCCCcEEEccCceeeeecc-C-CCCcCCCCEEECCCCcccCCCCcc
Q 036588 151 GEIPSDIANC-SYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIP-Y-AGHLYQLQWLDLSDNQLSGSLPSF 227 (541)
Q Consensus 151 ~~~~~~~~~~-~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~-~~~~~~L~~L~l~~~~~~~~~~~~ 227 (541)
+.+|..+... ++|++|++++|.+....|..++.+++|++|++++|.+.+..+ . +..+++|++|++++|.+.+..|..
T Consensus 283 ~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~ 362 (768)
T 3rgz_A 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362 (768)
T ss_dssp ESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT
T ss_pred CccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH
Confidence 6667666554 888888888888887788888888888888888888874444 3 678888888888888887677777
Q ss_pred cCCCC-CccEEeccCCcccCcCChhhhc-cCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccC
Q 036588 228 KFKMP-LLQFLDLSSNRLSAELPTNVFH-NLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLT 305 (541)
Q Consensus 228 ~~~~~-~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 305 (541)
+..++ +|++|++++|.+.+.++..... .+++|+.|++.+|.+.+..|..+..+++|++|++++|.+....+..+..++
T Consensus 363 l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 442 (768)
T 3rgz_A 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442 (768)
T ss_dssp HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCC
Confidence 77666 8888888888876655554422 267899999999999888899999999999999999999888888899999
Q ss_pred CccEEEeeCCccccccc-cccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEc
Q 036588 306 KLEKLDLQYNRLQGTIL-YVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYL 384 (541)
Q Consensus 306 ~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 384 (541)
+|+.|++++|.+....+ .+..+++|++|++++|.+...++..+..+++|+.|++++|.+++.++.. +..+++|+.|++
T Consensus 443 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L 521 (768)
T 3rgz_A 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKL 521 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEEC
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH-HhcCCCCCEEEC
Confidence 99999999999875444 4888999999999999998888888999999999999999998666654 558999999999
Q ss_pred cCcccccCCCcCCcCCccCCeEEcccCCCCCccch---------------------------------------------
Q 036588 385 SNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPK--------------------------------------------- 419 (541)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------------------------------------- 419 (541)
.+|++.+..+..+..+++|++|++++|.+....|.
T Consensus 522 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (768)
T 3rgz_A 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 601 (768)
T ss_dssp CSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCG
T ss_pred CCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccc
Confidence 99999888888999999999999999876543332
Q ss_pred -------------------------hhhccCCCcEEEccccccccccCC-CcccCCcceEeccCCcCCCCCCccccCCCC
Q 036588 420 -------------------------EISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSGSLPSFKFKMPL 473 (541)
Q Consensus 420 -------------------------~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 473 (541)
.+..+++|+.|++++|++.+.+|. ++.+++|+.|++++|.++..+|..++.+++
T Consensus 602 ~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~ 681 (768)
T 3rgz_A 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681 (768)
T ss_dssp GGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred hhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCC
Confidence 233467899999999999877765 889999999999999999999999999999
Q ss_pred ccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeecccc
Q 036588 474 LQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNF 533 (541)
Q Consensus 474 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 533 (541)
|+.|++++|++.+.+| ..+..+++|+.|++++|++.+.+|+. ..+.++....+.+|+-
T Consensus 682 L~~LdLs~N~l~g~ip-~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~ 739 (768)
T 3rgz_A 682 LNILDLSSNKLDGRIP-QAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPG 739 (768)
T ss_dssp CCEEECCSSCCEECCC-GGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTE
T ss_pred CCEEECCCCcccCcCC-hHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCch
Confidence 9999999999998888 67899999999999999999999976 3345555666777753
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.1e-50 Score=424.36 Aligned_cols=513 Identities=25% Similarity=0.218 Sum_probs=360.1
Q ss_pred CCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEe
Q 036588 20 TYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESL 99 (541)
Q Consensus 20 ~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 99 (541)
.+++++|+++++.+++..+..|+++++|++|++++|.+++..|..+.++++|++|++++|.+ +.+|...+.++++|++|
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL-SQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC-CCCCTTTTTTCTTCSEE
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc-CccChhhhccCCCCCEE
Confidence 35899999999999988888899999999999999999988899999999999999999988 46776544459999999
Q ss_pred eccccccCccCCccCCCCCCCcEEecCCCccc-----cccccCcceEEEecCccccccCCcccc--CCCCccEEEeccCc
Q 036588 100 FLKSNMFHGKIPSTLSSCKRLRETSLSLNDFF-----WDHTKRNWQQLYLSKNMFYGEIPSDIA--NCSYLRILVLQFNN 172 (541)
Q Consensus 100 ~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~ 172 (541)
++++|.+....+..|+++++|++|+++++.+. .+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 99999998777788999999999999998765 334578899999999988776655543 55889999999888
Q ss_pred ccccCCcccccc---------------------------CCCcEEEccCceeeeeccC-CCCcC--CCCEEECCCCcccC
Q 036588 173 FSGAIPKEISNL---------------------------TKLEKLDLQYNKLQGTIPY-AGHLY--QLQWLDLSDNQLSG 222 (541)
Q Consensus 173 i~~~~~~~l~~l---------------------------~~L~~L~l~~~~~~~~~~~-~~~~~--~L~~L~l~~~~~~~ 222 (541)
+....+..+..+ ++|+.|+++++.+.+..+. +..++ +|+.|++++|.+..
T Consensus 183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~ 262 (680)
T 1ziw_A 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262 (680)
T ss_dssp CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc
Confidence 876666655544 3456666666666554433 44443 38888888887776
Q ss_pred CCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCcccc---------ccCCCCCcCcccccEEEeccccc
Q 036588 223 SLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFY---------GEIPSDTANCSYLRILVLRFNNF 293 (541)
Q Consensus 223 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---------~~~~~~~~~~~~L~~L~l~~~~~ 293 (541)
..+..+..+++|++|++++|.+.+ .+...|..+++|+.|++.++... ......|..+++|++|++++|.+
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l 341 (680)
T 1ziw_A 263 VGNDSFAWLPQLEYFFLEYNNIQH-LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBSE-ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCB
T ss_pred cCcccccCcccccEeeCCCCccCc-cChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCcc
Confidence 666677778888888888887743 33344577777888877764322 11223566777788888888777
Q ss_pred CCCccccccccCCccEEEeeCCccccccc---ccc--ccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcC
Q 036588 294 SGAIPKEISNLTKLEKLDLQYNRLQGTIL---YVG--HLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVEL 368 (541)
Q Consensus 294 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 368 (541)
....+..+..+++|+.|++++|....... .+. ..++|+.+++++|.+....+..+..+++|+.|++++|.+++.+
T Consensus 342 ~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 421 (680)
T 1ziw_A 342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEEC
T ss_pred CCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcccc
Confidence 76666667777788888887775321111 121 1246777777777776666666777777777777777776556
Q ss_pred ChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCC--CccchhhhccCCCcEEEccccccccccCC-Cc
Q 036588 369 PTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFP--GAIPKEISNLTKLEKLDLQYNRLQGTIPY-AG 445 (541)
Q Consensus 369 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~ 445 (541)
+...+..+++|+++++++|++.+..+..+..+++|++|++++|.+. ...+..+..+++|+.|++++|.+....+. +.
T Consensus 422 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 501 (680)
T 1ziw_A 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501 (680)
T ss_dssp CSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhc
Confidence 6566667777777777777766555566666667777777666554 24455666666677777766666654443 55
Q ss_pred ccCCcceEeccCCcCCCCC--------CccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCC
Q 036588 446 HLFQLQWLDLSDNQLSGSL--------PSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDT 517 (541)
Q Consensus 446 ~~~~L~~L~l~~~~~~~~~--------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 517 (541)
.+++|+.|++++|.+.... ...+..+++|++|++++|.+. .++...+..+++|+.|++++|.+....+..|
T Consensus 502 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 580 (680)
T 1ziw_A 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVF 580 (680)
T ss_dssp TCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCCcCCHhHh
Confidence 6666666666666655321 112455666666666666663 4555556666666666666666665555556
Q ss_pred CCccccceEEeecccccc
Q 036588 518 PNCSYLRILVVQFNNFSG 535 (541)
Q Consensus 518 ~~~~~L~~L~l~~~~~~~ 535 (541)
..+++|+.|++++|.+++
T Consensus 581 ~~l~~L~~L~L~~N~l~~ 598 (680)
T 1ziw_A 581 NNQVSLKSLNLQKNLITS 598 (680)
T ss_dssp TTCTTCCEEECTTSCCCB
T ss_pred CCCCCCCEEECCCCcCCc
Confidence 666666666666666654
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.7e-50 Score=418.01 Aligned_cols=516 Identities=24% Similarity=0.210 Sum_probs=434.4
Q ss_pred CCCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcE
Q 036588 19 RTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLES 98 (541)
Q Consensus 19 ~~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 98 (541)
..++|++|+++++.+++..|++|+++++|++|++++|.++...+..|.++++|++|++++|.+.+..|..+.. +++|++
T Consensus 47 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~ 125 (680)
T 1ziw_A 47 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK-QKNLIT 125 (680)
T ss_dssp GGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTT-CTTCCE
T ss_pred CCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccc-cCCCCE
Confidence 3568999999999999988999999999999999999998444557999999999999999985433345555 999999
Q ss_pred eeccccccCccCCccCCCCCCCcEEecCCCccccc-------cccCcceEEEecCccccccCCccccCC-----------
Q 036588 99 LFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWD-------HTKRNWQQLYLSKNMFYGEIPSDIANC----------- 160 (541)
Q Consensus 99 L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~-------~~~~~L~~L~l~~~~~~~~~~~~~~~~----------- 160 (541)
|++++|.+....+..+.++++|++|+++++.+... ...++|+.|++++|.+.+..+..+..+
T Consensus 126 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~ 205 (680)
T 1ziw_A 126 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 205 (680)
T ss_dssp EECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTC
T ss_pred EECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcccc
Confidence 99999999988889999999999999999876522 234799999999999988777666554
Q ss_pred ----------------CCccEEEeccCcccccCCccccccCC--CcEEEccCceeeeeccC-CCCcCCCCEEECCCCccc
Q 036588 161 ----------------SYLRILVLQFNNFSGAIPKEISNLTK--LEKLDLQYNKLQGTIPY-AGHLYQLQWLDLSDNQLS 221 (541)
Q Consensus 161 ----------------~~L~~L~l~~~~i~~~~~~~l~~l~~--L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~ 221 (541)
++|+.|+++++.+.+..+..+..++. |++|++++|.+....+. +..+++|++|++++|.+.
T Consensus 206 ~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 285 (680)
T 1ziw_A 206 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 285 (680)
T ss_dssp CCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBS
T ss_pred ccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccC
Confidence 45677788888887777788887755 99999999999877654 889999999999999998
Q ss_pred CCCCcccCCCCCccEEeccCCcccC--------cCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEeccccc
Q 036588 222 GSLPSFKFKMPLLQFLDLSSNRLSA--------ELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNF 293 (541)
Q Consensus 222 ~~~~~~~~~~~~L~~L~l~~~~~~~--------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 293 (541)
+..+..+..+++|++|+++++.... .+....|..+++|+.|++++|.+.+..+..|..+++|++|++++|.+
T Consensus 286 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~ 365 (680)
T 1ziw_A 286 HLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365 (680)
T ss_dssp EECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBS
T ss_pred ccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCch
Confidence 8888889999999999999875432 22233568899999999999999988888999999999999999864
Q ss_pred CCC--ccccccc--cCCccEEEeeCCccccccc-cccccCCCcEEeccCccccCCC-CcccCCCCcceEEEcccCcCcCc
Q 036588 294 SGA--IPKEISN--LTKLEKLDLQYNRLQGTIL-YVGHLLQLQWLDLSDNQLSGSL-PSFKFNMPLLQFLDLSSNRLSVE 367 (541)
Q Consensus 294 ~~~--~~~~l~~--l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~ 367 (541)
... ....+.. .++|+.|++++|.+....+ .+..+++|+.|++++|.+...+ ...+..+++|++|++++|.+. .
T Consensus 366 ~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~ 444 (680)
T 1ziw_A 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL-Q 444 (680)
T ss_dssp CCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEE-E
T ss_pred hhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcc-e
Confidence 321 1122322 3689999999999886654 4888999999999999987544 467889999999999999986 5
Q ss_pred CChhhhcCCCCccEEEccCcccc--cCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccC---
Q 036588 368 LPTNVFHNLPFLEELYLSNNMFY--GEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIP--- 442 (541)
Q Consensus 368 ~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--- 442 (541)
+....+..+++|+.|++.+|.+. +..+..+..+++|++|++++|.+....+..+..+++|+.|++++|++.....
T Consensus 445 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 524 (680)
T 1ziw_A 445 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHAN 524 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTS
T ss_pred eChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhc
Confidence 66667778999999999999876 4567789999999999999999998888889999999999999999875421
Q ss_pred ------CCcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCC
Q 036588 443 ------YAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSD 516 (541)
Q Consensus 443 ------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 516 (541)
.+..+++|+.|++++|.+....+..+..+++|+.|++++|.+. .++...+..+++|+.|++++|.+.+..+..
T Consensus 525 ~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 603 (680)
T 1ziw_A 525 PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN-TLPASVFNNQVSLKSLNLQKNLITSVEKKV 603 (680)
T ss_dssp TTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCCCBCCHHH
T ss_pred cCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCC-cCCHhHhCCCCCCCEEECCCCcCCccChhH
Confidence 2577899999999999999665567899999999999999995 577788899999999999999999776666
Q ss_pred CC-CccccceEEeecccccccC
Q 036588 517 TP-NCSYLRILVVQFNNFSGAI 537 (541)
Q Consensus 517 ~~-~~~~L~~L~l~~~~~~~~~ 537 (541)
+. .+++|+.|++++|++...-
T Consensus 604 ~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 604 FGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp HHHHHTTCSEEECTTCCCCBCC
T ss_pred hcccccccCEEEccCCCcccCC
Confidence 76 7899999999999887543
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.6e-50 Score=417.75 Aligned_cols=509 Identities=22% Similarity=0.173 Sum_probs=389.4
Q ss_pred CCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEe
Q 036588 20 TYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESL 99 (541)
Q Consensus 20 ~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 99 (541)
...+++|+++++.+++..|.+|+++++|++|++++|.+.+..|.+|.++++|++|++++|.+.+..|..+.. +++|++|
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L 110 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG-PKALKHL 110 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSS-CTTCCEE
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcc-cccccEe
Confidence 347899999999999888889999999999999999998778889999999999999999886555666665 9999999
Q ss_pred eccccccCccCCccCCCCCCCcEEecCCCccccc-----cccCcceEEEecCccccccCCccccCCCCcc--EEEeccCc
Q 036588 100 FLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWD-----HTKRNWQQLYLSKNMFYGEIPSDIANCSYLR--ILVLQFNN 172 (541)
Q Consensus 100 ~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~--~L~l~~~~ 172 (541)
++++|.++...+..++++++|++|+++++.+... ..+++|+.|++++|.+.+..+..+..+++|+ .|++++|.
T Consensus 111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred eccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc
Confidence 9999999877778889999999988887765422 2246677777777777666666666777776 66777776
Q ss_pred ccccCCccccccCCCcEEEccCceeeeeccCCCCcCC--CCEEECCCCc---ccCCCCcccCCCC--CccEEeccCCccc
Q 036588 173 FSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQ--LQWLDLSDNQ---LSGSLPSFKFKMP--LLQFLDLSSNRLS 245 (541)
Q Consensus 173 i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~--L~~L~l~~~~---~~~~~~~~~~~~~--~L~~L~l~~~~~~ 245 (541)
+....+..+.. ..|++|+++++.. ....+..+.+ ++.+.+.... .....+..+..+. +|+.++++++.+.
T Consensus 191 l~~~~~~~~~~-~~L~~L~l~~~~~--~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~ 267 (606)
T 3t6q_A 191 IAGIEPGAFDS-AVFQSLNFGGTQN--LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267 (606)
T ss_dssp CCEECTTTTTT-CEEEEEECTTCSC--HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred cCccChhHhhh-ccccccccCCchh--HHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence 66544444333 5677777766541 1111111222 1222221111 0111112222222 6888999998874
Q ss_pred CcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccc--c
Q 036588 246 AELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTIL--Y 323 (541)
Q Consensus 246 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~ 323 (541)
.++...|..+++|+.|+++++.+. ..|..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+ .
T Consensus 268 -~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 345 (606)
T 3t6q_A 268 -NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345 (606)
T ss_dssp -SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSST
T ss_pred -ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhh
Confidence 566666788899999999998887 677788889999999999998887767788889999999999987763332 2
Q ss_pred ccccCCCcEEeccCccccCCC--CcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCc-CCcCC
Q 036588 324 VGHLLQLQWLDLSDNQLSGSL--PSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPS-DTQNC 400 (541)
Q Consensus 324 ~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~ 400 (541)
+..+++|++|++++|.+.... +..+..+++|++|++++|.+. ......+..+++|+.|++.+|++.+..+. .+..+
T Consensus 346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 424 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL-SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424 (606)
T ss_dssp TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE-EECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTC
T ss_pred hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCC-cCCHHHhcCCccCCeEECCCCcCCCcccchhhhCc
Confidence 778899999999998877544 566788899999999999886 45555677889999999999988765443 48889
Q ss_pred ccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccc-c---CCCcccCCcceEeccCCcCCCCCCccccCCCCccE
Q 036588 401 SYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGT-I---PYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQF 476 (541)
Q Consensus 401 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 476 (541)
++|++|++++|.+....+..+..+++|++|++++|.+.+. . ..+..+++|+.|++++|.+....+..+..+++|++
T Consensus 425 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 504 (606)
T 3t6q_A 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504 (606)
T ss_dssp TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCE
Confidence 9999999999998887888888999999999999988652 1 23677899999999999988777888899999999
Q ss_pred eeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeecccccccC
Q 036588 477 LDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAI 537 (541)
Q Consensus 477 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 537 (541)
|++++|++.+..+ ..+..+++| .|++++|++.+..|+.+..+++|+.|++++|++....
T Consensus 505 L~Ls~N~l~~~~~-~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 505 VDLSHNRLTSSSI-EALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp EECCSSCCCGGGG-GGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred EECCCCccCcCCh-hHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence 9999999866544 678888999 9999999999878888888999999999999887543
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.5e-49 Score=407.62 Aligned_cols=505 Identities=20% Similarity=0.145 Sum_probs=374.9
Q ss_pred CCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEe
Q 036588 20 TYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESL 99 (541)
Q Consensus 20 ~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 99 (541)
..++++|+++++.+++..+.+|+++++|++|++++|.+++..|.+|.++++|++|++++|.+.+..|..+.. +++|++|
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L 109 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG-LTSLENL 109 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTT-CTTCCEE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCC-cccCCEE
Confidence 357899999999998887888999999999999999888667888889999999999999885555666665 9999999
Q ss_pred eccccccCccCCccCCCCCCCcEEecCCCccc------cccccCcceEEEecCccccccCCccccCCCCcc----EEEec
Q 036588 100 FLKSNMFHGKIPSTLSSCKRLRETSLSLNDFF------WDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLR----ILVLQ 169 (541)
Q Consensus 100 ~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~ 169 (541)
++++|.+....+..++++++|++|+++++.+. .+..+++|++|++++|.+.+..+..++.+++|+ .++++
T Consensus 110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred EccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeecc
Confidence 99999888777778888888888777766543 123345555555555555555444444444333 55555
Q ss_pred cCcccccCCccccccCCCcEEEccCceeee--eccCCCCcCCCCEEECCCCcccC------CCCcccCCCC--CccEEec
Q 036588 170 FNNFSGAIPKEISNLTKLEKLDLQYNKLQG--TIPYAGHLYQLQWLDLSDNQLSG------SLPSFKFKMP--LLQFLDL 239 (541)
Q Consensus 170 ~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~~~--~L~~L~l 239 (541)
+|.+....+..+.. .+|++|++++|.+.+ ....+..++.++.+.+....+.. .....+..+. .++.+.+
T Consensus 190 ~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 268 (606)
T 3vq2_A 190 LNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268 (606)
T ss_dssp TCCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEE
T ss_pred CCCcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheec
Confidence 55555333332222 255555555554431 11224445555554443222110 0111111111 2344444
Q ss_pred -cCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccc
Q 036588 240 -SSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQ 318 (541)
Q Consensus 240 -~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 318 (541)
..+.+.+..+. +..+++|+.|++.++.+. ..+ .+..+++|++|++++|.+. .++ .+ .+++|+.|++++|...
T Consensus 269 ~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n~~~ 341 (606)
T 3vq2_A 269 TYTNDFSDDIVK--FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTMNKGS 341 (606)
T ss_dssp CCCTTCCGGGGS--CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEESCSSC
T ss_pred cccccccccccc--cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccCc-ccc-cC-CCCccceeeccCCcCc
Confidence 33444444443 678899999999999886 344 7888999999999999984 555 45 8999999999999654
Q ss_pred cccccccccCCCcEEeccCccccCC--CCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCC-c
Q 036588 319 GTILYVGHLLQLQWLDLSDNQLSGS--LPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIP-S 395 (541)
Q Consensus 319 ~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~ 395 (541)
... .+..+++|++|++++|.+... .+..+..+++|++|++++|.++ .++ ..+..+++|+.|++.+|.+.+..+ .
T Consensus 342 ~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~ 418 (606)
T 3vq2_A 342 ISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMS-ANFMGLEELQHLDFQHSTLKRVTEFS 418 (606)
T ss_dssp EEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EEC-CCCTTCTTCCEEECTTSEEESTTTTT
T ss_pred cch-hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cch-hhccCCCCCCeeECCCCccCCccChh
Confidence 333 577899999999999988754 3677788999999999999886 444 556689999999999999987666 5
Q ss_pred CCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccc-cC-CCcccCCcceEeccCCcCCCCCCccccCCCC
Q 036588 396 DTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGT-IP-YAGHLFQLQWLDLSDNQLSGSLPSFKFKMPL 473 (541)
Q Consensus 396 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 473 (541)
.+..+++|++|++++|.+....+..+..+++|++|++++|.+.+. .+ .+..+++|+.|++++|.+....+..+..+++
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 498 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhccccc
Confidence 788999999999999999888888899999999999999998862 34 4788999999999999998888888999999
Q ss_pred ccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCcc-ccceEEeecccccccCC
Q 036588 474 LQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCS-YLRILVVQFNNFSGAIP 538 (541)
Q Consensus 474 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~p 538 (541)
|++|++++|++.+..+ ..+..+++|+.|++++|++. .+|..+..++ +|+.|++++|++...-|
T Consensus 499 L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 499 LQLLNMSHNNLLFLDS-SHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CCEEECCSSCCSCEEG-GGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CCEEECCCCcCCCcCH-HHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 9999999999966545 67888999999999999998 6777788887 69999999999876433
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.1e-47 Score=396.49 Aligned_cols=506 Identities=22% Similarity=0.207 Sum_probs=413.5
Q ss_pred EEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccc
Q 036588 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKS 103 (541)
Q Consensus 24 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 103 (541)
+.++.++.+++ .+|..+.. ++++|++++|.+++..|..|.++++|++|++++|.+.+..|..+.. +++|++|++++
T Consensus 15 ~~~~c~~~~l~-~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~ 90 (606)
T 3t6q_A 15 KTYNCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQS-QHRLDTLVLTA 90 (606)
T ss_dssp TEEECTTSCCS-SCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTT-CTTCCEEECTT
T ss_pred ceEECCCCCcc-cCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccC-ccccCeeeCCC
Confidence 35677777777 56766654 7899999999999777899999999999999999986656666666 99999999999
Q ss_pred cccCccCCccCCCCCCCcEEecCCCcccc-----ccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCC
Q 036588 104 NMFHGKIPSTLSSCKRLRETSLSLNDFFW-----DHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIP 178 (541)
Q Consensus 104 ~~~~~~~~~~~~~l~~L~~l~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 178 (541)
|.+....|..++++++|++|+++++.+.. +..+++|++|++++|.+.+.....+..+++|+.|++++|.+....+
T Consensus 91 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 170 (606)
T 3t6q_A 91 NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK 170 (606)
T ss_dssp CCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH
T ss_pred CcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccCh
Confidence 99998889999999999999999887653 3456789999999998887554455568899999999998887777
Q ss_pred ccccccCCCc--EEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCcc--EEeccCCcc--cCcCChhh
Q 036588 179 KEISNLTKLE--KLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQ--FLDLSSNRL--SAELPTNV 252 (541)
Q Consensus 179 ~~l~~l~~L~--~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~--~L~l~~~~~--~~~~~~~~ 252 (541)
..++.+++|+ .|++++|.+....+......+|+.|+++++.. .+..+..+.+++ .+.+....- ...+....
T Consensus 171 ~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~ 247 (606)
T 3t6q_A 171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247 (606)
T ss_dssp HHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGG
T ss_pred hhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchh---HHHHhhhccccchhheechhhccccccccChhH
Confidence 7788888888 88888888887777766667889999888752 222333333333 333322210 11333444
Q ss_pred hccCC--CCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccc-cccccCC
Q 036588 253 FHNLP--FLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTIL-YVGHLLQ 329 (541)
Q Consensus 253 ~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~ 329 (541)
|..+. +|+.+++.++.+....+..|..+++|++|++++|.+. .++..+..+++|++|++++|.+....+ .+..+++
T Consensus 248 ~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 326 (606)
T 3t6q_A 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS 326 (606)
T ss_dssp GGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTT
T ss_pred hchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCc
Confidence 55544 7899999999999888888999999999999999988 667778999999999999999886644 5889999
Q ss_pred CcEEeccCccccC-CCCcccCCCCcceEEEcccCcCcCcCC-hhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEE
Q 036588 330 LQWLDLSDNQLSG-SLPSFKFNMPLLQFLDLSSNRLSVELP-TNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILV 407 (541)
Q Consensus 330 L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 407 (541)
|++|++++|.+.. .....+..+++|++|++++|.++.... ...+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 327 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 406 (606)
T 3t6q_A 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406 (606)
T ss_dssp CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEE
T ss_pred CCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEE
Confidence 9999999998764 344558899999999999999863321 34567899999999999999877888899999999999
Q ss_pred cccCCCCCccc-hhhhccCCCcEEEccccccccccCC-CcccCCcceEeccCCcCCC---CCCccccCCCCccEeeCCCC
Q 036588 408 LKFNNFPGAIP-KEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSG---SLPSFKFKMPLLQFLDLSSN 482 (541)
Q Consensus 408 l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~ 482 (541)
+++|.+....+ ..+..+++|+.|++++|.+....+. +..+++|+.|++++|.+.. ..+..+..+++|++|++++|
T Consensus 407 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp CTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred CCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC
Confidence 99998876544 4588999999999999999876555 7889999999999999875 23456889999999999999
Q ss_pred ccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeecccccccCCC
Q 036588 483 RLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIPK 539 (541)
Q Consensus 483 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~ 539 (541)
.+.+..+ ..+..+++|+.|++++|++.+..|+.+..+++| .|++++|++++..|+
T Consensus 487 ~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~ 541 (606)
T 3t6q_A 487 DLSSIDQ-HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPS 541 (606)
T ss_dssp CCCEECT-TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGG
T ss_pred ccCccCh-hhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHh
Confidence 9966444 778899999999999999999999999999999 999999999976664
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.2e-47 Score=391.39 Aligned_cols=503 Identities=21% Similarity=0.170 Sum_probs=404.9
Q ss_pred EEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccc
Q 036588 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKS 103 (541)
Q Consensus 24 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 103 (541)
++++.++.+++ .+|..+. +++++|+++++.+++..+..|.++++|++|++++|.+.+..|..+.. +++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~-l~~L~~L~Ls~ 89 (606)
T 3vq2_A 14 ITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHG-LHHLSNLILTG 89 (606)
T ss_dssp TEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT-CTTCCEEECTT
T ss_pred CceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhc-hhhcCEeECCC
Confidence 46788888888 5666554 89999999999999777779999999999999999985544555555 99999999999
Q ss_pred cccCccCCccCCCCCCCcEEecCCCccc-----cccccCcceEEEecCccccc-cCCccccCCCCccEEEeccCcccccC
Q 036588 104 NMFHGKIPSTLSSCKRLRETSLSLNDFF-----WDHTKRNWQQLYLSKNMFYG-EIPSDIANCSYLRILVLQFNNFSGAI 177 (541)
Q Consensus 104 ~~~~~~~~~~~~~l~~L~~l~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~~~ 177 (541)
|.++...|..|+++++|++|+++++.+. .+..+++|++|++++|.+.+ .+|..+.++++|++|++++|.+....
T Consensus 90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred CcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC
Confidence 9999888999999999999999988764 34556788888888888875 45778888888888888888888776
Q ss_pred CccccccCCCc----EEEccCceeeeeccCCCCcCCCCEEECCCCccc-CCCCcccCCCCCccEEeccCCcccC-----c
Q 036588 178 PKEISNLTKLE----KLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLS-GSLPSFKFKMPLLQFLDLSSNRLSA-----E 247 (541)
Q Consensus 178 ~~~l~~l~~L~----~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~-----~ 247 (541)
+..++.+++|+ +|++++|.+....+......+|+.|++++|.+. ...+..+..+++++.+.+....+.. .
T Consensus 170 ~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~ 249 (606)
T 3vq2_A 170 VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249 (606)
T ss_dssp TTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred hhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccc
Confidence 77777766554 788888888777666545558888888888764 2355566777888777765433221 1
Q ss_pred CChhhhccCC--CCcEEEe-cCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccccc
Q 036588 248 LPTNVFHNLP--FLEELYL-SNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYV 324 (541)
Q Consensus 248 ~~~~~~~~~~--~L~~L~l-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 324 (541)
.....+..+. .++.+.+ ..+.+.+..+. +..+++|+.|+++++.+.. .+ .+..+++|+.|++++|.+. ..+.+
T Consensus 250 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l~-~lp~~ 325 (606)
T 3vq2_A 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQLK-QFPTL 325 (606)
T ss_dssp CCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCCS-SCCCC
T ss_pred cChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccCc-ccccC
Confidence 2222333333 3555666 44556555555 8899999999999999864 44 7888999999999999984 44466
Q ss_pred cccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcC-ChhhhcCCCCccEEEccCcccccCCCcCCcCCccC
Q 036588 325 GHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVEL-PTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYL 403 (541)
Q Consensus 325 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 403 (541)
.+++|++|++++|...... .+..+++|+.|++++|.+++.. ....+..+++|++|++++|.+.. .+..+..+++|
T Consensus 326 -~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L 401 (606)
T 3vq2_A 326 -DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEEL 401 (606)
T ss_dssp -CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTC
T ss_pred -CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCC
Confidence 9999999999999654333 5668999999999999886332 13456689999999999999874 55788999999
Q ss_pred CeEEcccCCCCCccc-hhhhccCCCcEEEccccccccccCC-CcccCCcceEeccCCcCCC-CCCccccCCCCccEeeCC
Q 036588 404 RILVLKFNNFPGAIP-KEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSG-SLPSFKFKMPLLQFLDLS 480 (541)
Q Consensus 404 ~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~ 480 (541)
++|++++|.+....+ ..+..+++|+.|++++|.+....+. +..+++|+.|++++|.+.. ..+..+..+++|++|+++
T Consensus 402 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls 481 (606)
T 3vq2_A 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS 481 (606)
T ss_dssp CEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred CeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECC
Confidence 999999999887666 6889999999999999999876655 7889999999999999886 478889999999999999
Q ss_pred CCccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeecccccccCCCC
Q 036588 481 SNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIPKE 540 (541)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~ 540 (541)
+|.+.+..+ ..+..+++|+.|++++|++.+..|..+..+++|+.|++++|++. .+|++
T Consensus 482 ~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~ 539 (606)
T 3vq2_A 482 KCQLEQISW-GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGI 539 (606)
T ss_dssp TSCCCEECT-TTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESC
T ss_pred CCcCCccCh-hhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHh
Confidence 999966444 77889999999999999999888999999999999999999987 77764
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.2e-47 Score=393.15 Aligned_cols=476 Identities=20% Similarity=0.253 Sum_probs=331.5
Q ss_pred CCCCCCCcccc---ceeeeCCCCCCeEEEEecCCcceeeeCCcccCCCCCcEeccccccc------CC------ccchhh
Q 036588 1 NWNTSSSVCNW---TGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWF------SG------SIPASI 65 (541)
Q Consensus 1 ~~~~~~~~~~~---~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~------~~------~~~~~~ 65 (541)
+|+.+.++|.| .|++|+.+ .+|+.|+++++++++.+|.+|+++++|++|++++|.+ .+ .+|...
T Consensus 59 ~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~ 137 (636)
T 4eco_A 59 NWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137 (636)
T ss_dssp CCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH
T ss_pred CCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH
Confidence 59999999999 99999875 7999999999999999999999999999999999965 22 334433
Q ss_pred hhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeecc--------------------ccccCccCCccCCCCCCCcEEec
Q 036588 66 FNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLK--------------------SNMFHGKIPSTLSSCKRLRETSL 125 (541)
Q Consensus 66 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~--------------------~~~~~~~~~~~~~~l~~L~~l~~ 125 (541)
+..|+ +++..+.+.+..|..+...+..+..+++. .+.+++ +|..++++++|++
T Consensus 138 --~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~--- 210 (636)
T 4eco_A 138 --KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQ--- 210 (636)
T ss_dssp --HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCE---
T ss_pred --HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCE---
Confidence 45566 66776666555555555433333333333 344444 5566666666666
Q ss_pred CCCccccccccCcceEEEecCcccccc-----------------CCcccc--CCCCccEEEeccCcccccCCccccccCC
Q 036588 126 SLNDFFWDHTKRNWQQLYLSKNMFYGE-----------------IPSDIA--NCSYLRILVLQFNNFSGAIPKEISNLTK 186 (541)
Q Consensus 126 ~~~~~~~~~~~~~L~~L~l~~~~~~~~-----------------~~~~~~--~~~~L~~L~l~~~~i~~~~~~~l~~l~~ 186 (541)
|++++|.+.+. +|..+. .+++|++|++++|.+...+|..++++++
T Consensus 211 ----------------L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 274 (636)
T 4eco_A 211 ----------------FYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE 274 (636)
T ss_dssp ----------------EEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSS
T ss_pred ----------------EECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCC
Confidence 66666666653 788888 9999999999999988888989999999
Q ss_pred CcEEEccCce-eee--eccCCCCc------CCCCEEECCCCcccCCCCc--ccCCCCCccEEeccCCcccCcCChhhhcc
Q 036588 187 LEKLDLQYNK-LQG--TIPYAGHL------YQLQWLDLSDNQLSGSLPS--FKFKMPLLQFLDLSSNRLSAELPTNVFHN 255 (541)
Q Consensus 187 L~~L~l~~~~-~~~--~~~~~~~~------~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 255 (541)
|++|++++|. +++ .+..++.+ ++|+.|++++|.+. .+|. .+..+++|++|++++|.+.+.++ .+..
T Consensus 275 L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~ 351 (636)
T 4eco_A 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGS 351 (636)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEE
T ss_pred CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--hhCC
Confidence 9999999987 764 33334444 78888888888877 6666 67777777777777777655555 4466
Q ss_pred CCCCcEEEecCccccccCCCCCcCccc-ccEEEecccccCCCccccccccC--CccEEEeeCCccccccccccccCCCcE
Q 036588 256 LPFLEELYLSNNMFYGEIPSDTANCSY-LRILVLRFNNFSGAIPKEISNLT--KLEKLDLQYNRLQGTILYVGHLLQLQW 332 (541)
Q Consensus 256 ~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~~~~~~L~~ 332 (541)
+++|+.|++++|.+. ..|..+..+++ |++|++++|.+. .++..+..++ +|+.|++++|.+..
T Consensus 352 l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~------------- 416 (636)
T 4eco_A 352 EIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGS------------- 416 (636)
T ss_dssp EEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTT-------------
T ss_pred CCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCC-------------
Confidence 667777777777666 55566666666 777777666665 4444443332 55555555555443
Q ss_pred EeccCccccCCCCcccC-------CCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcC------
Q 036588 333 LDLSDNQLSGSLPSFKF-------NMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQN------ 399 (541)
Q Consensus 333 L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------ 399 (541)
..+..+. .+++|+.|++++|.++ .++...+..+++|++|++++|.+.......+..
T Consensus 417 ----------~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~ 485 (636)
T 4eco_A 417 ----------VDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFK 485 (636)
T ss_dssp ----------TTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECT
T ss_pred ----------cchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccccccc
Confidence 3333333 4567777777777776 566666666777777777777776222222332
Q ss_pred -CccCCeEEcccCCCCCccchhhh--ccCCCcEEEccccccccccCCCcccCCcceEec------cCCcCCCCCCccccC
Q 036588 400 -CSYLRILVLKFNNFPGAIPKEIS--NLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDL------SDNQLSGSLPSFKFK 470 (541)
Q Consensus 400 -~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l------~~~~~~~~~~~~~~~ 470 (541)
+++|++|++++|.+. ..+..+. .+++|+.|++++|++......+..+++|+.|++ ++|.+...+|..+..
T Consensus 486 ~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~ 564 (636)
T 4eco_A 486 NTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564 (636)
T ss_dssp TGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG
T ss_pred ccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhc
Confidence 237888888888777 4455554 778888888888887764444667788888888 456667788888889
Q ss_pred CCCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCC--------CCccccceEEeeccccc
Q 036588 471 MPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDT--------PNCSYLRILVVQFNNFS 534 (541)
Q Consensus 471 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--------~~~~~L~~L~l~~~~~~ 534 (541)
+++|++|++++|.+ +.+|.. +. ++|+.|++++|++......++ ..+...+..++++|+..
T Consensus 565 l~~L~~L~Ls~N~l-~~ip~~-~~--~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L 632 (636)
T 4eco_A 565 CPSLTQLQIGSNDI-RKVNEK-IT--PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDAL 632 (636)
T ss_dssp CSSCCEEECCSSCC-CBCCSC-CC--TTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCGGG
T ss_pred CCCCCEEECCCCcC-CccCHh-Hh--CcCCEEECcCCCCccccHHhcchhhhcccceeecCCccccCCCccc
Confidence 99999999999999 778754 33 789999999998775433332 22333455677788765
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.4e-45 Score=388.84 Aligned_cols=507 Identities=24% Similarity=0.182 Sum_probs=291.2
Q ss_pred cccceeeeCCCCCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCcc-chhhhhcCCCcEEEeecCccCCCCCh
Q 036588 9 CNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSI-PASIFNMSSLLSINFINNALFGELPP 87 (541)
Q Consensus 9 ~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~ 87 (541)
+.|..++. -.+++++|++++|.+++..+..|+++++|++|++++|.....+ |.+|.++++|++|++++|.+.+..|.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 45677776 4678999999999999888899999999999999998554455 78899999999999999988665566
Q ss_pred hhhhhcCCCcEeeccccccCccCCcc--CCCCCCCcEEecCCCccc------cccccCcceEEEecCccccccCCccccC
Q 036588 88 NFCNHLSNLESLFLKSNMFHGKIPST--LSSCKRLRETSLSLNDFF------WDHTKRNWQQLYLSKNMFYGEIPSDIAN 159 (541)
Q Consensus 88 ~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~l~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 159 (541)
.+.. +++|++|++++|.+.+..+.. +.++++|++|++++|.+. .+..+++|+.|++++|.+.+..+..+..
T Consensus 92 ~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 92 AFQG-LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp SSCS-CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred HccC-CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 6666 999999999999888755554 888888888777666543 1233455555555555555555555544
Q ss_pred C--CCccEEEeccCcccccCCccccccCC------CcEEEccCceeeeeccC-C---CCcCCCCEEECCCCccc------
Q 036588 160 C--SYLRILVLQFNNFSGAIPKEISNLTK------LEKLDLQYNKLQGTIPY-A---GHLYQLQWLDLSDNQLS------ 221 (541)
Q Consensus 160 ~--~~L~~L~l~~~~i~~~~~~~l~~l~~------L~~L~l~~~~~~~~~~~-~---~~~~~L~~L~l~~~~~~------ 221 (541)
+ ++|+.|++++|.+....+..++.+.+ |+.|++++|.+....+. + .....++.+.+..+...
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~ 250 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccc
Confidence 4 55555555555555444444444333 55555555544322211 1 11234444444321111
Q ss_pred ---CCCCcccCC--CCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCC
Q 036588 222 ---GSLPSFKFK--MPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGA 296 (541)
Q Consensus 222 ---~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 296 (541)
......+.. .++|+.|++++|.+. ..+...|..+++|+.|++++|.+....+..|..+++|++|++++|.+...
T Consensus 251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 329 (844)
T 3j0a_A 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329 (844)
T ss_dssp SSTTGGGTTTTTTTTSCCCEEECTTCCCC-EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC
T ss_pred ccCCCChhhhhccccCCccEEECCCCccc-ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc
Confidence 011111111 245555666555543 22333345555566666665555555555555555666666665555544
Q ss_pred ccccccccCCccEEEeeCCcccccccc-ccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcC
Q 036588 297 IPKEISNLTKLEKLDLQYNRLQGTILY-VGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHN 375 (541)
Q Consensus 297 ~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 375 (541)
.+..+..+++|+.|++++|.+...... +..+++|++|++++|.+... ..+++|+.+.+++|.++ .++. .
T Consensus 330 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~----~ 399 (844)
T 3j0a_A 330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPK----I 399 (844)
T ss_dssp CSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCC----C
T ss_pred CHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-cccc----c
Confidence 455555555666666655555433332 45555566666655554421 12455555555555554 2322 2
Q ss_pred CCCccEEEccCcccccCCC-cCCcCCccCCeEEcccCCCCCccch-hhhccCCCcEEEcccccccccc------CCCccc
Q 036588 376 LPFLEELYLSNNMFYGEIP-SDTQNCSYLRILVLKFNNFPGAIPK-EISNLTKLEKLDLQYNRLQGTI------PYAGHL 447 (541)
Q Consensus 376 ~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~------~~~~~~ 447 (541)
..+++.+++++|.+.+... ..+..+++|++|++++|.+....+. .+..+++|+.|++++|.+.... ..+..+
T Consensus 400 ~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l 479 (844)
T 3j0a_A 400 NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL 479 (844)
T ss_dssp CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCB
T ss_pred ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCc
Confidence 3455556666555542211 1123556666666666665543222 2334566666666666554211 114455
Q ss_pred CCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEE
Q 036588 448 FQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILV 527 (541)
Q Consensus 448 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 527 (541)
++|+.|++++|.+....+..+..+++|++|++++|.+.+ ++...+. ++|+.|++++|.+.+..|+.+. +|+.|+
T Consensus 480 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~ 553 (844)
T 3j0a_A 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV-LSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLD 553 (844)
T ss_dssp CCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSS-CCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEE
T ss_pred ccccEEECCCCcccccChhHccchhhhheeECCCCCCCc-cChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEE
Confidence 666666666666665555556666666666666666633 3333333 5666666666666655554432 456666
Q ss_pred eecccccc
Q 036588 528 VQFNNFSG 535 (541)
Q Consensus 528 l~~~~~~~ 535 (541)
+.+|++..
T Consensus 554 l~~Np~~C 561 (844)
T 3j0a_A 554 ITHNKFIC 561 (844)
T ss_dssp EEEECCCC
T ss_pred ecCCCccc
Confidence 66666543
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-45 Score=377.01 Aligned_cols=492 Identities=20% Similarity=0.185 Sum_probs=372.0
Q ss_pred CCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEe
Q 036588 20 TYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESL 99 (541)
Q Consensus 20 ~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 99 (541)
.+++++|+++++.+++..+.+|+++++|++|++++|.+++..+..|.++++|++|++++|.+.+..|..+.. +++|++|
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L 105 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG-LSSLQKL 105 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT-CTTCCEE
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcC-ccccccc
Confidence 457899999999998877888999999999999999888666778888999999999998874433344444 8999999
Q ss_pred eccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccc-cCCccccCCCCccEEEeccCcccccCC
Q 036588 100 FLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYG-EIPSDIANCSYLRILVLQFNNFSGAIP 178 (541)
Q Consensus 100 ~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~~~~ 178 (541)
+++++.++...+..++++++|++ |++++|.+.. .+|..++++++|++|++++|.+....+
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~-------------------L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~ 166 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKE-------------------LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCE-------------------EECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECG
T ss_pred cccccccccCCCccccccccccE-------------------EecCCCccceecChhhhcccCCCCEEeCcCCccceecH
Confidence 99988888665556888888877 5555555554 257778888888999888888887767
Q ss_pred ccccccCCC----cEEEccCceeeeeccCCCCcCCCCEEECCCCcccC-CCCcccCCCCCccEEeccCCccc-----CcC
Q 036588 179 KEISNLTKL----EKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSG-SLPSFKFKMPLLQFLDLSSNRLS-----AEL 248 (541)
Q Consensus 179 ~~l~~l~~L----~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-----~~~ 248 (541)
..++.+++| +.+++++|.+....+......+|+.|+++++.... ..+..+..+++++...+....+. ..+
T Consensus 167 ~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~ 246 (570)
T 2z63_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246 (570)
T ss_dssp GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEEC
T ss_pred HHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhc
Confidence 778888887 78888888887766654344478888887764321 22334445666665544332211 122
Q ss_pred ChhhhccCCC--CcEEEecCc-cccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCcccccccccc
Q 036588 249 PTNVFHNLPF--LEELYLSNN-MFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVG 325 (541)
Q Consensus 249 ~~~~~~~~~~--L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 325 (541)
+...+..+++ ++.+.+.++ .+.+..+..+..+++|+.|+++++.+. ..+..+..+ +|+.|++++|.+..... .
T Consensus 247 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~--~ 322 (570)
T 2z63_A 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPT--L 322 (570)
T ss_dssp CTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCB--C
T ss_pred chhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCc--c
Confidence 2333344433 455666665 566677788888899999999998877 466667777 99999999998773322 5
Q ss_pred ccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcC-ChhhhcCCCCccEEEccCcccccCCCcCCcCCccCC
Q 036588 326 HLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVEL-PTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLR 404 (541)
Q Consensus 326 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 404 (541)
.+++|+.+++.+|.+....+. ..+++|++|++++|.++... ....+..+++|++|++++|.+.+..+ .+..+++|+
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~ 399 (570)
T 2z63_A 323 KLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLE 399 (570)
T ss_dssp BCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCC
T ss_pred cccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCC
Confidence 778899999998887644433 67889999999998876322 13445688999999999998874433 388899999
Q ss_pred eEEcccCCCCCccc-hhhhccCCCcEEEccccccccccCC-CcccCCcceEeccCCcCC-CCCCccccCCCCccEeeCCC
Q 036588 405 ILVLKFNNFPGAIP-KEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLS-GSLPSFKFKMPLLQFLDLSS 481 (541)
Q Consensus 405 ~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~ 481 (541)
+|++++|.+....+ ..+..+++|+.|++++|.+....+. +..+++|+.|++++|.+. ..+|..+..+++|++|++++
T Consensus 400 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~ 479 (570)
T 2z63_A 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479 (570)
T ss_dssp EEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred EEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCC
Confidence 99999998876544 5678899999999999988766554 678899999999999886 35778888999999999999
Q ss_pred CccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeecccccccCCC
Q 036588 482 NRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIPK 539 (541)
Q Consensus 482 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~ 539 (541)
|.+.+..+ ..+..+++|+.|++++|.+.+..++.+..+++|+.|++++|++.+..|.
T Consensus 480 n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 480 CQLEQLSP-TAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp SCCCEECT-TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CccccCCh-hhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 99866444 6788899999999999999988788899999999999999999988774
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2e-44 Score=376.42 Aligned_cols=491 Identities=20% Similarity=0.256 Sum_probs=309.3
Q ss_pred CCCCCC-----Cc--ccc------------ceeeeCCCCCCeEEEEecCCcceeeeCCcccCCCCCcEecc-cccccCCc
Q 036588 1 NWNTSS-----SV--CNW------------TGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDL-SFNWFSGS 60 (541)
Q Consensus 1 ~~~~~~-----~~--~~~------------~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l-~~~~~~~~ 60 (541)
+|+.+. .+ |.| .|++|+. ..+|+.|+|+++++.+.+|..|+++++|++|+| ++|.+.+.
T Consensus 285 ~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~ 363 (876)
T 4ecn_A 285 NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363 (876)
T ss_dssp GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHT
T ss_pred CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCcCchHHhccccceEeeeccccccccc
Confidence 587665 55 999 9999986 579999999999999999999999999999999 77766544
Q ss_pred cchhhhhc---------CCCcEE--------E------------eecCccCCCCChhhhhhcCCCcEeeccc--cccCcc
Q 036588 61 IPASIFNM---------SSLLSI--------N------------FINNALFGELPPNFCNHLSNLESLFLKS--NMFHGK 109 (541)
Q Consensus 61 ~~~~~~~l---------~~L~~L--------~------------l~~~~~~~~~~~~~~~~l~~L~~L~l~~--~~~~~~ 109 (541)
.|...... ..++.. . +..+.. ..+... .....++.+.+.. |.+++
T Consensus 364 ~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~--~~~i~~-~~~l~l~~l~l~~~~N~L~~- 439 (876)
T 4ecn_A 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE--MKPIKK-DSRISLKDTQIGNLTNRITF- 439 (876)
T ss_dssp TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTT--SCCCCC-CCCCCCCTTTTTCCSCEEEE-
T ss_pred ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcc--cccccc-ccccchhhceeccccCcccc-
Confidence 22110000 000000 0 000000 000000 0122333333332 45554
Q ss_pred CCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCcccc--CCCCccEEEeccCcccccCCccccccCCC
Q 036588 110 IPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIA--NCSYLRILVLQFNNFSGAIPKEISNLTKL 187 (541)
Q Consensus 110 ~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~l~~l~~L 187 (541)
+|..++++++|++|+++++.+......... +..+.+...+.+|..+. .+++|+.|++++|.+...+|..++++++|
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~--~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L 517 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDW--EDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPEL 517 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSC--SCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccc--cccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCC
Confidence 666777777777777777665431111000 00111333344666666 88888888888888777788888888888
Q ss_pred cEEEccCce-eee--eccCC-------CCcCCCCEEECCCCcccCCCCc--ccCCCCCccEEeccCCcccCcCChhhhcc
Q 036588 188 EKLDLQYNK-LQG--TIPYA-------GHLYQLQWLDLSDNQLSGSLPS--FKFKMPLLQFLDLSSNRLSAELPTNVFHN 255 (541)
Q Consensus 188 ~~L~l~~~~-~~~--~~~~~-------~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 255 (541)
+.|++++|. +++ .+..+ ..+++|+.|++++|.+. .+|. .+..+++|+.|++++|.+. .++ .|..
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~ 593 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGT 593 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCT
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch--hhcC
Confidence 888888886 654 22222 34457777877777776 5565 6677777777777777765 555 4566
Q ss_pred CCCCcEEEecCccccccCCCCCcCccc-ccEEEecccccCCCccccccccC--CccEEEeeCCccccccccccccCCCcE
Q 036588 256 LPFLEELYLSNNMFYGEIPSDTANCSY-LRILVLRFNNFSGAIPKEISNLT--KLEKLDLQYNRLQGTILYVGHLLQLQW 332 (541)
Q Consensus 256 ~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~~~~~~L~~ 332 (541)
+++|+.|++++|.+. ..|..+..+++ |+.|++++|.+. .++..+..++ +|+.|++++|.+....+.+.
T Consensus 594 L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~------- 664 (876)
T 4ecn_A 594 NVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS------- 664 (876)
T ss_dssp TSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCS-------
T ss_pred CCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccch-------
Confidence 677777777777766 56666666666 777777777666 4444444443 36666666666543222111
Q ss_pred EeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcC-Cc-------CCccCC
Q 036588 333 LDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSD-TQ-------NCSYLR 404 (541)
Q Consensus 333 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~-------~~~~L~ 404 (541)
.......+++|+.|++++|.++ .++...+..+++|+.|++++|.+. .++.. +. ++++|+
T Consensus 665 -----------~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~ 731 (876)
T 4ecn_A 665 -----------CSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLT 731 (876)
T ss_dssp -----------SCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCC
T ss_pred -----------hhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCcc
Confidence 0000113346777777777766 566666666777777777777665 33322 22 234777
Q ss_pred eEEcccCCCCCccchhhh--ccCCCcEEEccccccccccCCCcccCCcceEeccC------CcCCCCCCccccCCCCccE
Q 036588 405 ILVLKFNNFPGAIPKEIS--NLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSD------NQLSGSLPSFKFKMPLLQF 476 (541)
Q Consensus 405 ~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~~~~~~~~~~~~~L~~ 476 (541)
+|++++|.+. ..+..+. .+++|+.|++++|.+.+....+..+++|+.|++++ |.+...+|..+..+++|+.
T Consensus 732 ~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~ 810 (876)
T 4ecn_A 732 TIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQ 810 (876)
T ss_dssp EEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCE
T ss_pred EEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCE
Confidence 7888777777 4455554 67778888888877776444466777788887765 6667788888889999999
Q ss_pred eeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEee
Q 036588 477 LDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQ 529 (541)
Q Consensus 477 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 529 (541)
|++++|.+ +.+|.. +. ++|+.|++++|++....+..+.....+..+.+.
T Consensus 811 L~Ls~N~L-~~Ip~~-l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~ 859 (876)
T 4ecn_A 811 LQIGSNDI-RKVDEK-LT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLL 859 (876)
T ss_dssp EECCSSCC-CBCCSC-CC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEE
T ss_pred EECCCCCC-CccCHh-hc--CCCCEEECCCCCCCccChHHccccccchheeec
Confidence 99999998 778854 33 689999999999886655555544444444443
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7.5e-44 Score=363.50 Aligned_cols=473 Identities=21% Similarity=0.245 Sum_probs=293.5
Q ss_pred ccccceeeeCCC-----------CCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEe
Q 036588 8 VCNWTGITCDVR-----------TYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINF 76 (541)
Q Consensus 8 ~~~~~~~~~~~~-----------~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 76 (541)
.|.|.++ |+.+ .+++++|+++++.+++..+.+|+++++|++|++++|.+++..|.+|.++++|++|++
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 5888887 7543 247899999999998888888999999999999999888777788899999999999
Q ss_pred ecCccCCCCChhhhhhcCCCcEeeccccccCcc-CCccCCCCCCCcEEecCCCccccccccCcceEEEecCcc-ccccCC
Q 036588 77 INNALFGELPPNFCNHLSNLESLFLKSNMFHGK-IPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNM-FYGEIP 154 (541)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~ 154 (541)
++|.+. ..+...+.++++|++|++++|.++.. .+..++++++|++|+ +++|. +....+
T Consensus 82 s~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-------------------L~~n~~~~~~~~ 141 (549)
T 2z81_A 82 SDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR-------------------IGNVETFSEIRR 141 (549)
T ss_dssp TTSCCC-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEE-------------------EEESSSCCEECT
T ss_pred CCCccC-ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEE-------------------CCCCccccccCH
Confidence 999884 45554334489999999999888753 456778888887754 44454 333333
Q ss_pred ccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceeeeeccC-CCCcCCCCEEECCCCcccCCC---CcccCC
Q 036588 155 SDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPY-AGHLYQLQWLDLSDNQLSGSL---PSFKFK 230 (541)
Q Consensus 155 ~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~---~~~~~~ 230 (541)
..+..+++|++|++++|.+....+..++.+++|++|+++++........ +..+++|++|++++|.+.+.. ......
T Consensus 142 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 221 (549)
T 2z81_A 142 IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEV 221 (549)
T ss_dssp TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCC
T ss_pred hhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhh
Confidence 5677788888888888887777777788888888888877765543333 345778888888888776431 122345
Q ss_pred CCCccEEeccCCcccCcCChh---hhccCCCCcEEEecCccccccC------CCCCcCcccccEEEecccccCCCc----
Q 036588 231 MPLLQFLDLSSNRLSAELPTN---VFHNLPFLEELYLSNNMFYGEI------PSDTANCSYLRILVLRFNNFSGAI---- 297 (541)
Q Consensus 231 ~~~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~------~~~~~~~~~L~~L~l~~~~~~~~~---- 297 (541)
+++|+.|+++++.+.+..+.. .+..+++|+.+++.+|.+.+.. ...+..+++++.+.+.++.+....
T Consensus 222 ~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~ 301 (549)
T 2z81_A 222 SSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYD 301 (549)
T ss_dssp CCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCC
T ss_pred hhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhccc
Confidence 678888888888765433322 2356678888888887765321 123455677777777776554221
Q ss_pred -cccccccCCccEEEeeCCccccccccc-cccCCCcEEeccCccccCCC---CcccCCCCcceEEEcccCcCcCcCCh--
Q 036588 298 -PKEISNLTKLEKLDLQYNRLQGTILYV-GHLLQLQWLDLSDNQLSGSL---PSFKFNMPLLQFLDLSSNRLSVELPT-- 370 (541)
Q Consensus 298 -~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~-- 370 (541)
.......++|+.+++++|.+......+ ..+++|++|++++|.+.... ...+..+++|+.|++++|.++ .++.
T Consensus 302 l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~ 380 (549)
T 2z81_A 302 LSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTG 380 (549)
T ss_dssp CCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC-CHHHHH
T ss_pred chhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccc-ccccch
Confidence 111233456777777777665433333 45667777777776655322 122445666666666666664 2221
Q ss_pred hhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCc
Q 036588 371 NVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQL 450 (541)
Q Consensus 371 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L 450 (541)
..+..+++|++|++++|++. .++..+..+++|++|++++|.+.... ..+ .++|+.|++++|++.+. .
T Consensus 381 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~-~~~--~~~L~~L~Ls~N~l~~~---~------ 447 (549)
T 2z81_A 381 EILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVK-TCI--PQTLEVLDVSNNNLDSF---S------ 447 (549)
T ss_dssp HHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCC-TTS--CTTCSEEECCSSCCSCC---C------
T ss_pred hhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccccc-chh--cCCceEEECCCCChhhh---c------
Confidence 33455666666666666654 44445555566666666666554221 111 13455555555544322 1
Q ss_pred ceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeec
Q 036588 451 QWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQF 530 (541)
Q Consensus 451 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 530 (541)
..+++|++|++++|++. .+|. ...+++|+.|++++|++.+..++.+..+++|+.|++++
T Consensus 448 ------------------~~l~~L~~L~Ls~N~l~-~ip~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~ 506 (549)
T 2z81_A 448 ------------------LFLPRLQELYISRNKLK-TLPD--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT 506 (549)
T ss_dssp ------------------CCCTTCCEEECCSSCCS-SCCC--GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCS
T ss_pred ------------------ccCChhcEEECCCCccC-cCCC--cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecC
Confidence 24445555555555542 3432 12345555555555555544444455555555555555
Q ss_pred cccccc
Q 036588 531 NNFSGA 536 (541)
Q Consensus 531 ~~~~~~ 536 (541)
|++.+.
T Consensus 507 N~~~~~ 512 (549)
T 2z81_A 507 NPWDCS 512 (549)
T ss_dssp SCBCCC
T ss_pred CCccCC
Confidence 555443
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.8e-42 Score=365.50 Aligned_cols=500 Identities=22% Similarity=0.196 Sum_probs=412.0
Q ss_pred EEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccc
Q 036588 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKS 103 (541)
Q Consensus 24 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 103 (541)
++.+.++++++ .+|. -.+++++|++++|.+++..|..|.++++|++|++++|...+.++...+.++++|++|++++
T Consensus 7 ~~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 56777888888 4565 5689999999999999778999999999999999999666677444445599999999999
Q ss_pred cccCccCCccCCCCCCCcEEecCCCcccc-------ccccCcceEEEecCccccccCC-ccccCCCCccEEEeccCcccc
Q 036588 104 NMFHGKIPSTLSSCKRLRETSLSLNDFFW-------DHTKRNWQQLYLSKNMFYGEIP-SDIANCSYLRILVLQFNNFSG 175 (541)
Q Consensus 104 ~~~~~~~~~~~~~l~~L~~l~~~~~~~~~-------~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~ 175 (541)
|.+....|..|+++++|++|++++|.+.. +..+++|++|++++|.+.+..+ ..++++++|+.|++++|.+..
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 99998889999999999999999997752 5677899999999999987654 578999999999999999988
Q ss_pred cCCcccccc--CCCcEEEccCceeeeeccC-CCCcCC------CCEEECCCCcccCCCCcccCC---CCCccEEeccCCc
Q 036588 176 AIPKEISNL--TKLEKLDLQYNKLQGTIPY-AGHLYQ------LQWLDLSDNQLSGSLPSFKFK---MPLLQFLDLSSNR 243 (541)
Q Consensus 176 ~~~~~l~~l--~~L~~L~l~~~~~~~~~~~-~~~~~~------L~~L~l~~~~~~~~~~~~~~~---~~~L~~L~l~~~~ 243 (541)
..+..+..+ ++|+.|++++|.+....+. +..+++ |+.|++++|.+....+..+.. ...++.+.+..+.
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 888888887 8999999999988764433 444444 999999999877665554433 3567888876332
Q ss_pred ccC--------cCChhhhccC--CCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEee
Q 036588 244 LSA--------ELPTNVFHNL--PFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQ 313 (541)
Q Consensus 244 ~~~--------~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 313 (541)
... ......|..+ ++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|+++
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 322 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEE
T ss_pred ccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECC
Confidence 211 1222334443 689999999999988888999999999999999999987777889999999999999
Q ss_pred CCccccccc-cccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccC
Q 036588 314 YNRLQGTIL-YVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGE 392 (541)
Q Consensus 314 ~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 392 (541)
+|.+....+ .+..+++|++|++++|.+....+..+..+++|+.|++++|.++ .++ .+++|+.+.+.+|++. .
T Consensus 323 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~-----~~~~L~~L~l~~N~l~-~ 395 (844)
T 3j0a_A 323 YNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-TIH-----FIPSIPDIFLSGNKLV-T 395 (844)
T ss_dssp SCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC-CCS-----SCCSCSEEEEESCCCC-C
T ss_pred CCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC-ccc-----CCCCcchhccCCCCcc-c
Confidence 999876644 4889999999999999998777778889999999999999986 222 3889999999999986 3
Q ss_pred CCcCCcCCccCCeEEcccCCCCCccc-hhhhccCCCcEEEccccccccccCC--CcccCCcceEeccCCcCCC-----CC
Q 036588 393 IPSDTQNCSYLRILVLKFNNFPGAIP-KEISNLTKLEKLDLQYNRLQGTIPY--AGHLFQLQWLDLSDNQLSG-----SL 464 (541)
Q Consensus 393 ~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~-----~~ 464 (541)
++. ...+++.+++++|.+..... ..+..+++|+.|++++|++....+. +..+++|+.|++++|.+.. ..
T Consensus 396 l~~---~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~ 472 (844)
T 3j0a_A 396 LPK---INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC 472 (844)
T ss_dssp CCC---CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCC
T ss_pred ccc---cccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccc
Confidence 332 25689999999999886432 3456899999999999998754433 5568999999999998863 34
Q ss_pred CccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeecccccccCCCC
Q 036588 465 PSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIPKE 540 (541)
Q Consensus 465 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~ 540 (541)
+..+..+++|+.|++++|.+.+ ++...+..+++|+.|++++|.+.+..+..+. ++|+.|++++|.+++..|+.
T Consensus 473 ~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~ 545 (844)
T 3j0a_A 473 WDVFEGLSHLQVLYLNHNYLNS-LPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV 545 (844)
T ss_dssp SSCSSCBCCEECCCCCHHHHTT-CCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC
T ss_pred hhhhcCcccccEEECCCCcccc-cChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH
Confidence 4568889999999999999955 5557889999999999999999976666666 89999999999999888864
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-42 Score=355.19 Aligned_cols=482 Identities=24% Similarity=0.229 Sum_probs=385.8
Q ss_pred EEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeecccc
Q 036588 25 ALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSN 104 (541)
Q Consensus 25 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 104 (541)
+++-++.+++ .+|..+. +++++|++++|.+++..+.+|.++++|++|++++|.+.+ ++...+.++++|++|++++|
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp EEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTC
T ss_pred EEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc-cCcccccCchhCCEEeCcCC
Confidence 4555566666 4565443 579999999999997777889999999999999998854 44444444999999999999
Q ss_pred ccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccc-cCCccccc
Q 036588 105 MFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSG-AIPKEISN 183 (541)
Q Consensus 105 ~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~l~~ 183 (541)
+++...+..|+++++|++ |++++|.+....+..++.+++|++|++++|.+.. .+|..+++
T Consensus 87 ~l~~~~~~~~~~l~~L~~-------------------L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~ 147 (570)
T 2z63_A 87 PIQSLALGAFSGLSSLQK-------------------LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147 (570)
T ss_dssp CCCEECTTTTTTCTTCCE-------------------EECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGG
T ss_pred cCCccCHhhhcCcccccc-------------------ccccccccccCCCccccccccccEEecCCCccceecChhhhcc
Confidence 999878889999998888 5555666665555568999999999999999886 46889999
Q ss_pred cCCCcEEEccCceeeeeccC-CCCcCCC----CEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCC
Q 036588 184 LTKLEKLDLQYNKLQGTIPY-AGHLYQL----QWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPF 258 (541)
Q Consensus 184 l~~L~~L~l~~~~~~~~~~~-~~~~~~L----~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 258 (541)
+++|++|++++|.+....+. +..+++| +.+++++|.+....+..+... +|+.++++++..........+..++.
T Consensus 148 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~ 226 (570)
T 2z63_A 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAG 226 (570)
T ss_dssp CTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTT
T ss_pred cCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccc
Confidence 99999999999998876543 6777777 899999999886666666554 89999999885433333445567777
Q ss_pred CcEEEecCccc------cccCCCCCcCccc--ccEEEeccc-ccCCCccccccccCCccEEEeeCCccccccccccccCC
Q 036588 259 LEELYLSNNMF------YGEIPSDTANCSY--LRILVLRFN-NFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQ 329 (541)
Q Consensus 259 L~~L~l~~~~~------~~~~~~~~~~~~~--L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 329 (541)
++...+....+ .......+..+++ ++.+.+.++ .+....+..+..+++|+.|+++++.+......+..+ +
T Consensus 227 l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~ 305 (570)
T 2z63_A 227 LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-G 305 (570)
T ss_dssp CEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-C
T ss_pred cceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-C
Confidence 77766543221 1222333444443 556666666 555567778889999999999999988665557777 9
Q ss_pred CcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCC--CcCCcCCccCCeEE
Q 036588 330 LQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEI--PSDTQNCSYLRILV 407 (541)
Q Consensus 330 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~ 407 (541)
|++|++++|.+. .++. ..+++|+.|.+++|.+....+. ..+++|+.|++++|.+.... +..+..+++|++|+
T Consensus 306 L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ 379 (570)
T 2z63_A 306 WQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379 (570)
T ss_dssp CSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEE
T ss_pred ccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEE
Confidence 999999999987 3333 4689999999999987644444 57999999999999886443 45678899999999
Q ss_pred cccCCCCCccchhhhccCCCcEEEccccccccccC--CCcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccc
Q 036588 408 LKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIP--YAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLS 485 (541)
Q Consensus 408 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 485 (541)
+++|.+....+. +..+++|+.|++++|.+....+ .+..+++|+.|++++|.+....+..+..+++|++|++++|.+.
T Consensus 380 l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 458 (570)
T 2z63_A 380 LSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458 (570)
T ss_dssp CCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCc
Confidence 999998865554 8899999999999999887655 3788999999999999998888888999999999999999986
Q ss_pred -cccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeecccccccCCC
Q 036588 486 -TELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIPK 539 (541)
Q Consensus 486 -~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~ 539 (541)
+.++ ..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|+
T Consensus 459 ~~~~p-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 512 (570)
T 2z63_A 459 ENFLP-DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512 (570)
T ss_dssp GGEEC-SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cccch-hhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence 3566 6788999999999999999988899999999999999999999876554
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.7e-40 Score=338.65 Aligned_cols=457 Identities=20% Similarity=0.199 Sum_probs=312.3
Q ss_pred EEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeecccc
Q 036588 25 ALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSN 104 (541)
Q Consensus 25 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 104 (541)
+.+.++++++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+.+..|..+.. +++|++|++++|
T Consensus 9 ~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n 84 (549)
T 2z81_A 9 VCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYS-LGSLEHLDLSDN 84 (549)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTS
T ss_pred eEECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccc-cccCCEEECCCC
Confidence 3788888888 4555553 78899999998888667778888888888888888875444444544 888888888888
Q ss_pred ccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCcccccc-CCccccCCCCccEEEeccCc-ccccCCcccc
Q 036588 105 MFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGE-IPSDIANCSYLRILVLQFNN-FSGAIPKEIS 182 (541)
Q Consensus 105 ~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~-i~~~~~~~l~ 182 (541)
.+.+..+..++++++|++ |++++|.+.+. .+..+..+++|++|++++|. +....+..++
T Consensus 85 ~l~~~~~~~~~~l~~L~~-------------------L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 145 (549)
T 2z81_A 85 HLSSLSSSWFGPLSSLKY-------------------LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145 (549)
T ss_dssp CCCSCCHHHHTTCTTCCE-------------------EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT
T ss_pred ccCccCHHHhccCCCCcE-------------------EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhh
Confidence 877665556677776666 34444444432 34456666777777777665 2322224555
Q ss_pred ccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEE
Q 036588 183 NLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEEL 262 (541)
Q Consensus 183 ~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 262 (541)
.+++|++|++++|.+.+ ..+..+..+++|++|+++++.. ..++...+..+++|+.|
T Consensus 146 ~l~~L~~L~L~~n~l~~-----------------------~~~~~l~~l~~L~~L~l~~n~~-~~~~~~~~~~l~~L~~L 201 (549)
T 2z81_A 146 GLTSLNELEIKALSLRN-----------------------YQSQSLKSIRDIHHLTLHLSES-AFLLEIFADILSSVRYL 201 (549)
T ss_dssp TCCEEEEEEEEETTCCE-----------------------ECTTTTTTCSEEEEEEEECSBS-TTHHHHHHHSTTTBSEE
T ss_pred cccccCeeeccCCcccc-----------------------cChhhhhccccCceEecccCcc-cccchhhHhhcccccEE
Confidence 55666666665555543 3344444445555555555443 23333334455666666
Q ss_pred EecCccccccC---CCCCcCcccccEEEecccccCCCc----cccccccCCccEEEeeCCcccccc-------ccccccC
Q 036588 263 YLSNNMFYGEI---PSDTANCSYLRILVLRFNNFSGAI----PKEISNLTKLEKLDLQYNRLQGTI-------LYVGHLL 328 (541)
Q Consensus 263 ~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~-------~~~~~~~ 328 (541)
++++|.+.+.. ......+++|+.|+++++.+.... +..+..+++|+.+++++|.+.... ..+..++
T Consensus 202 ~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~ 281 (549)
T 2z81_A 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELG 281 (549)
T ss_dssp EEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCT
T ss_pred EccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhc
Confidence 66665554321 112234566667777666554322 223345667777777777654321 1245566
Q ss_pred CCcEEeccCccccCC-----CCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCC---CcCCcCC
Q 036588 329 QLQWLDLSDNQLSGS-----LPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEI---PSDTQNC 400 (541)
Q Consensus 329 ~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~ 400 (541)
+++.+.+.++.+... ....+...++|+.+++++|.+. .++...+..+++|+.|++++|.+.+.. +..+..+
T Consensus 282 ~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l 360 (549)
T 2z81_A 282 KVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360 (549)
T ss_dssp TCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSS
T ss_pred ccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhcc
Confidence 777777776654421 1112233578999999999986 788887778999999999999987543 2347789
Q ss_pred ccCCeEEcccCCCCCccc--hhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEee
Q 036588 401 SYLRILVLKFNNFPGAIP--KEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLD 478 (541)
Q Consensus 401 ~~L~~L~l~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 478 (541)
++|++|++++|++....+ ..+..+++|+.|++++|++......+..+++|+.|++++|.+.. ++..+ .++|++|+
T Consensus 361 ~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~ 437 (549)
T 2z81_A 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLD 437 (549)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEE
T ss_pred ccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCccc-ccchh--cCCceEEE
Confidence 999999999999986543 56889999999999999998655557888999999999999873 33332 36899999
Q ss_pred CCCCccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeecccccccCCC
Q 036588 479 LSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIPK 539 (541)
Q Consensus 479 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~ 539 (541)
+++|++.+ ++ ..+++|+.|++++|++. .+|. ...+++|+.|++++|++.+..|+
T Consensus 438 Ls~N~l~~-~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~ 491 (549)
T 2z81_A 438 VSNNNLDS-FS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDG 491 (549)
T ss_dssp CCSSCCSC-CC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCChhh-hc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHH
Confidence 99999955 32 57899999999999998 6665 56799999999999999977665
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.1e-41 Score=338.87 Aligned_cols=451 Identities=19% Similarity=0.196 Sum_probs=283.0
Q ss_pred EEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccc
Q 036588 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKS 103 (541)
Q Consensus 24 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 103 (541)
+++++++++++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+.+..|..+.. +++|++|++++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF-NQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTT-CTTCCEEECCS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhc-ccCCCEEecCC
Confidence 57899999999 4666665 89999999999998677788999999999999999885544555655 99999999999
Q ss_pred cccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccc-cCCccccCCCCccEEEeccCcccccCCcccc
Q 036588 104 NMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYG-EIPSDIANCSYLRILVLQFNNFSGAIPKEIS 182 (541)
Q Consensus 104 ~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~ 182 (541)
|+++ .+|.. .+++|++ |++++|.+.+ .+|..++.+++|++|++++|.+.. ..+.
T Consensus 79 N~l~-~lp~~--~l~~L~~-------------------L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~ 133 (520)
T 2z7x_B 79 NKLV-KISCH--PTVNLKH-------------------LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVL 133 (520)
T ss_dssp SCCC-EEECC--CCCCCSE-------------------EECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGG
T ss_pred Ccee-ecCcc--ccCCccE-------------------EeccCCccccccchhhhccCCcceEEEecCcccch---hhcc
Confidence 8887 34444 5666666 6666676665 356788999999999999988864 4566
Q ss_pred ccCCC--cEEEccCcee--eeecc-CCCCcC-CCCEEECCCCcccCCCC-cccCCCCCccEEeccCCc-------ccCcC
Q 036588 183 NLTKL--EKLDLQYNKL--QGTIP-YAGHLY-QLQWLDLSDNQLSGSLP-SFKFKMPLLQFLDLSSNR-------LSAEL 248 (541)
Q Consensus 183 ~l~~L--~~L~l~~~~~--~~~~~-~~~~~~-~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~-------~~~~~ 248 (541)
.+++| ++|++++|.+ ....+ .+..+. ....++++++.+.+..+ ..+..+++|+.+++++|. +.+.+
T Consensus 134 ~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 213 (520)
T 2z7x_B 134 PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL 213 (520)
T ss_dssp GGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH
T ss_pred ccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecch
Confidence 77777 8888888876 32222 233322 22345566666554333 345567777777777764 22222
Q ss_pred ChhhhccCCCCcEEEecCccccccCCCCCc---CcccccEEEecccccCCCccccc-----cccCCccEEEeeCCccccc
Q 036588 249 PTNVFHNLPFLEELYLSNNMFYGEIPSDTA---NCSYLRILVLRFNNFSGAIPKEI-----SNLTKLEKLDLQYNRLQGT 320 (541)
Q Consensus 249 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~ 320 (541)
+ .+..+++|+.|++.++.+.+.....+. ..++|++|++++|.+....+..+ ..+++|+.++++++.+ ..
T Consensus 214 ~--~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~ 290 (520)
T 2z7x_B 214 A--KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GF 290 (520)
T ss_dssp H--GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CS
T ss_pred h--hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ec
Confidence 2 345667777777766655432111110 12466666666666654455544 5566666666665554 11
Q ss_pred c-ccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcC
Q 036588 321 I-LYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQN 399 (541)
Q Consensus 321 ~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 399 (541)
. ..+... ...++|+.|++++|.+.. .. ....+++|++|++++|.+.+..+..+..
T Consensus 291 p~~~~~~~---------------------~~~~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 346 (520)
T 2z7x_B 291 PQSYIYEI---------------------FSNMNIKNFTVSGTRMVH-ML--CPSKISPFLHLDFSNNLLTDTVFENCGH 346 (520)
T ss_dssp CTHHHHHH---------------------HHTCCCSEEEEESSCCCC-CC--CCSSCCCCCEEECCSSCCCTTTTTTCCC
T ss_pred chhhhhcc---------------------cccCceeEEEcCCCcccc-cc--chhhCCcccEEEeECCccChhhhhhhcc
Confidence 1 011111 001334555555544431 11 1135566666666666666555566666
Q ss_pred CccCCeEEcccCCCCC--ccchhhhccCCCcEEEccccccccccC-C-CcccCCcceEeccCCcCCCCCCccccCCCCcc
Q 036588 400 CSYLRILVLKFNNFPG--AIPKEISNLTKLEKLDLQYNRLQGTIP-Y-AGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQ 475 (541)
Q Consensus 400 ~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~-~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 475 (541)
+++|++|++++|++.. ..+..+..+++|+.|++++|.+....+ . +..+++|+.|++++|.+....+..+. ++|+
T Consensus 347 l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~ 424 (520)
T 2z7x_B 347 LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIK 424 (520)
T ss_dssp CSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCC
T ss_pred CCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCC
Confidence 6777777777776664 233556667777777777777665233 2 45567777777777766544443332 5777
Q ss_pred EeeCCCCccccccCcccccCCcccceeeeccceecccCCC-CCCCccccceEEeecccccc
Q 036588 476 FLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPS-DTPNCSYLRILVVQFNNFSG 535 (541)
Q Consensus 476 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~ 535 (541)
+|++++|.+. .+|... ..+++|+.|++++|++. .+|. .+..+++|+.|++++|++.+
T Consensus 425 ~L~Ls~N~l~-~ip~~~-~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 425 VLDLHSNKIK-SIPKQV-VKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp EEECCSSCCC-CCCGGG-GGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred EEECCCCccc-ccchhh-hcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcc
Confidence 7777777773 566333 36777777777777777 3444 37777777777777777764
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.5e-40 Score=340.68 Aligned_cols=453 Identities=19% Similarity=0.214 Sum_probs=315.9
Q ss_pred CCCcEecccccccCCccchhhhhcCCCcEEEeecCcc------CC------CCChhhhhhcCCCcEeeccccccCccCCc
Q 036588 45 SSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNAL------FG------ELPPNFCNHLSNLESLFLKSNMFHGKIPS 112 (541)
Q Consensus 45 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~------~~------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 112 (541)
.+++.|+|+++.+.+.+|.+++++++|++|++++|.+ .+ .+|... +..|+ ++++.+.+....+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~ 156 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPRE 156 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchh
Confidence 5789999999999999999999999999999999965 22 445444 45666 77777777665555
Q ss_pred cCCCC-CCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEE
Q 036588 113 TLSSC-KRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLD 191 (541)
Q Consensus 113 ~~~~l-~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~ 191 (541)
.+..+ .++..+++...++.. .....++.+.+. ...|.+.. +|..++++++|++|+
T Consensus 157 ~~~~~~~~l~~~~l~~~~~~~-~~~~~l~~l~l~----------------------~~~n~l~~-ip~~l~~l~~L~~L~ 212 (636)
T 4eco_A 157 DFSDLIKDCINSDPQQKSIKK-SSRITLKDTQIG----------------------QLSNNITF-VSKAVMRLTKLRQFY 212 (636)
T ss_dssp GSCHHHHHHHHHCTTSCCCCC-CCCCCCCTTTTT----------------------CCSCEEEE-ECGGGGGCTTCCEEE
T ss_pred hHHHHHHHHhhcCcccccccc-ccccchhhhhhc----------------------cccCCCcc-CCHHHhcccCCCEEE
Confidence 55421 111111111110000 000001111110 01223333 444444555555555
Q ss_pred ccCceeee------------------eccCCC--CcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCc-ccC-cCC
Q 036588 192 LQYNKLQG------------------TIPYAG--HLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNR-LSA-ELP 249 (541)
Q Consensus 192 l~~~~~~~------------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~ 249 (541)
+++|.+.+ .+..++ .+++|++|++++|.+.+.+|..+..+++|++|++++|. +.+ .+|
T Consensus 213 Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp 292 (636)
T 4eco_A 213 MGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLK 292 (636)
T ss_dssp EESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHH
T ss_pred CcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccch
Confidence 55554444 334455 66666666666666666666667777777777777776 544 444
Q ss_pred hhhh-----ccCCCCcEEEecCccccccCCC--CCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccc
Q 036588 250 TNVF-----HNLPFLEELYLSNNMFYGEIPS--DTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTIL 322 (541)
Q Consensus 250 ~~~~-----~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 322 (541)
..+. ..+++|+.|++++|.+. ..|. .+..+++|++|++++|.+...++ .+..+++|+.|++++|.+.....
T Consensus 293 ~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~ 370 (636)
T 4eco_A 293 DDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPA 370 (636)
T ss_dssp HHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCT
T ss_pred HHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccH
Confidence 4331 12377788888777776 6666 67777788888888877764555 67777888888888887775545
Q ss_pred cccccCC-CcEEeccCccccCCCCcccCCC--CcceEEEcccCcCcCcCChhhhc-------CCCCccEEEccCcccccC
Q 036588 323 YVGHLLQ-LQWLDLSDNQLSGSLPSFKFNM--PLLQFLDLSSNRLSVELPTNVFH-------NLPFLEELYLSNNMFYGE 392 (541)
Q Consensus 323 ~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~ 392 (541)
.+..+++ |++|++++|.+. .++..+... ++|+.|++++|.+++..+.. +. .+++|+.|++++|.+...
T Consensus 371 ~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~~~~~~~~~~~L~~L~Ls~N~l~~l 448 (636)
T 4eco_A 371 NFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN-FDPLDPTPFKGINVSSINLSNNQISKF 448 (636)
T ss_dssp TSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCS-SCTTCSSCCCCCCEEEEECCSSCCCSC
T ss_pred hhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhh-hcccccccccCCCCCEEECcCCccCcC
Confidence 5777777 888888888877 555555554 48999999999987544432 32 567999999999999844
Q ss_pred CCcCCcCCccCCeEEcccCCCCCccchhhhcc-------CCCcEEEccccccccccCCCc--ccCCcceEeccCCcCCCC
Q 036588 393 IPSDTQNCSYLRILVLKFNNFPGAIPKEISNL-------TKLEKLDLQYNRLQGTIPYAG--HLFQLQWLDLSDNQLSGS 463 (541)
Q Consensus 393 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-------~~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~ 463 (541)
....+..+++|++|++++|.+.......+... ++|+.|++++|.+......+. .+++|+.|++++|.+..
T Consensus 449 p~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~- 527 (636)
T 4eco_A 449 PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK- 527 (636)
T ss_dssp CTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-
T ss_pred CHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-
Confidence 44446679999999999999985544444433 399999999999985544455 89999999999999996
Q ss_pred CCccccCCCCccEeeCC------CCccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeeccccc
Q 036588 464 LPSFKFKMPLLQFLDLS------SNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFS 534 (541)
Q Consensus 464 ~~~~~~~~~~L~~L~l~------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 534 (541)
+|..+..+++|++|+++ +|.+.+.+| ..+..+++|+.|++++|.+. .+|..+. ++|+.|++++|++.
T Consensus 528 ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 528 FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP-EGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC-TTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTC
T ss_pred cChhhhcCCCCCEEECCCCcccccCcccccCh-HHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCc
Confidence 88888999999999994 567767777 66788999999999999995 7787766 89999999999876
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-39 Score=329.63 Aligned_cols=436 Identities=19% Similarity=0.155 Sum_probs=314.4
Q ss_pred CCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEe
Q 036588 20 TYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESL 99 (541)
Q Consensus 20 ~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 99 (541)
.+++++|+++++.+++..+.+|+++++|++|++++|.+++..|..|.++++|++|++++|.+. .+|.. .+++|++|
T Consensus 20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L 95 (520)
T 2z7x_B 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHL 95 (520)
T ss_dssp CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEE
T ss_pred cccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEE
Confidence 369999999999999888889999999999999999999777999999999999999999984 67766 49999999
Q ss_pred eccccccCc-cCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCc--cEEEeccCcc--c
Q 036588 100 FLKSNMFHG-KIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYL--RILVLQFNNF--S 174 (541)
Q Consensus 100 ~l~~~~~~~-~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~i--~ 174 (541)
++++|.++. ..|..++++++|++|+++++. +.+ ..+..+++| +.|++++|.+ .
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-------------------l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTH-------------------LEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-------------------CCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred eccCCccccccchhhhccCCcceEEEecCcc-------------------cch---hhccccccceeeEEEeeccccccc
Confidence 999999986 467899999999996655544 332 234555555 7777777766 4
Q ss_pred ccCCccccccC-CCcEEEccCceeeeeccC--CCCcCCCCEEECCCCc-------ccCCCCcccCCCCCccEEeccCCcc
Q 036588 175 GAIPKEISNLT-KLEKLDLQYNKLQGTIPY--AGHLYQLQWLDLSDNQ-------LSGSLPSFKFKMPLLQFLDLSSNRL 244 (541)
Q Consensus 175 ~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~-------~~~~~~~~~~~~~~L~~L~l~~~~~ 244 (541)
...|..+..+. ....+++.++.+.+.... +..+++|+.+++++|. +.+..+ .+..+++|+.|+++++.+
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence 45555555543 223345555554433322 4567777777777664 332232 466778888888888776
Q ss_pred cCcCChhhhc--cCCCCcEEEecCccccccCCCCC-----cCcccccEEEecccccCCCcccccccc---CCccEEEeeC
Q 036588 245 SAELPTNVFH--NLPFLEELYLSNNMFYGEIPSDT-----ANCSYLRILVLRFNNFSGAIPKEISNL---TKLEKLDLQY 314 (541)
Q Consensus 245 ~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~l~~l---~~L~~L~l~~ 314 (541)
.+........ ..++|+.|++++|.+.+..|..+ ..+++|+.++++++.+ ......+..+ .+|+.|++++
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~ 311 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSG 311 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEES
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCC
Confidence 4332222211 24689999999999887788887 8899999999999887 2222334443 6799999999
Q ss_pred CccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCCh--hhhcCCCCccEEEccCcccccC
Q 036588 315 NRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPT--NVFHNLPFLEELYLSNNMFYGE 392 (541)
Q Consensus 315 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~ 392 (541)
|.+.... ....+++|++|++++|.+....+..+..+++|++|++++|.++ .++. ..+..+++|++|++++|.+.+.
T Consensus 312 n~l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~l~~L~~L~Ls~N~l~~~ 389 (520)
T 2z7x_B 312 TRMVHML-CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYD 389 (520)
T ss_dssp SCCCCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCC-BHHHHHHHHTTCTTCCEEECCSSCCBCC
T ss_pred Ccccccc-chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccC-ccccchHHHhhCCCCCEEECCCCcCCcc
Confidence 9875432 2367888999999999888767777888889999999988886 3222 3466788888888888887753
Q ss_pred CCc-CCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCC
Q 036588 393 IPS-DTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKM 471 (541)
Q Consensus 393 ~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 471 (541)
++. .+..+++|++|++++|.+++..+..+. ++|+.|++++|++......+..+++|+.|++++|.+....+..+..+
T Consensus 390 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l 467 (520)
T 2z7x_B 390 EKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRL 467 (520)
T ss_dssp GGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccC
Confidence 443 367778888888888877655444443 67777777777776444445567777777777777764333346667
Q ss_pred CCccEeeCCCCccccc
Q 036588 472 PLLQFLDLSSNRLSTE 487 (541)
Q Consensus 472 ~~L~~L~l~~~~~~~~ 487 (541)
++|++|++++|++.+.
T Consensus 468 ~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 468 TSLQKIWLHTNPWDCS 483 (520)
T ss_dssp TTCCEEECCSSCBCCC
T ss_pred CcccEEECcCCCCccc
Confidence 7777777777776543
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.3e-38 Score=329.52 Aligned_cols=503 Identities=22% Similarity=0.157 Sum_probs=353.8
Q ss_pred CCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEee
Q 036588 21 YRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLF 100 (541)
Q Consensus 21 ~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 100 (541)
..+++|++++|.|++..+.+|+++++|++|+|++|.++...+.+|.++++|++|++++|++ +.+|...+.++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l-~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-CEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC-CCCCHHHhcCCCCCCEEE
Confidence 4799999999999988888999999999999999999966778899999999999999998 567777777799999999
Q ss_pred ccccccCccCCccCCCCCCCcEEecCCCccc------cccccCcceEEEecCccccccCCccccCCCCc----cEEEecc
Q 036588 101 LKSNMFHGKIPSTLSSCKRLRETSLSLNDFF------WDHTKRNWQQLYLSKNMFYGEIPSDIANCSYL----RILVLQF 170 (541)
Q Consensus 101 l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L----~~L~l~~ 170 (541)
+++|+++...+..|+++++|++|+++++.+. ....+++|+.|++++|.+.+..+..+..++++ ..++++.
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 9999999777778999999999888887664 23345677777777777776666555544333 3566666
Q ss_pred CcccccCCccccccCCCcEEEccCceeeee--ccCCCCcCCCCEEECCCCc------ccCCCCcccCCCCCccEEeccCC
Q 036588 171 NNFSGAIPKEISNLTKLEKLDLQYNKLQGT--IPYAGHLYQLQWLDLSDNQ------LSGSLPSFKFKMPLLQFLDLSSN 242 (541)
Q Consensus 171 ~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~------~~~~~~~~~~~~~~L~~L~l~~~ 242 (541)
+.+....+. ......++.+.+.++..... ...+..+..++...+.... +.......+.....+....+..+
T Consensus 211 n~l~~i~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~ 289 (635)
T 4g8a_A 211 NPMNFIQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 289 (635)
T ss_dssp CCCCEECTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEE
T ss_pred CcccccCcc-cccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhh
Confidence 666533322 22334455566555432211 1113334444444332211 11111222333334444444332
Q ss_pred cccC--cCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccc
Q 036588 243 RLSA--ELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGT 320 (541)
Q Consensus 243 ~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 320 (541)
.... ......+....+++.+.+.++.+... ..+.....++.|++.++.+..... ..++.|+.+.+..+.....
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~ 364 (635)
T 4g8a_A 290 YLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA 364 (635)
T ss_dssp CCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB
T ss_pred hhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCC
Confidence 2111 11122345566778888777665433 234556778888888887654332 2456788888887765532
Q ss_pred cccccccCCCcEEeccCccccC--CCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCC-cCC
Q 036588 321 ILYVGHLLQLQWLDLSDNQLSG--SLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIP-SDT 397 (541)
Q Consensus 321 ~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~ 397 (541)
.....+++|+.++++.+.+.. ..+..+..+.+|+.+++..+... ... ..+..+++|+.+++..+......+ ..+
T Consensus 365 -~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~ 441 (635)
T 4g8a_A 365 -FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVF 441 (635)
T ss_dssp -CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EEC-SCCTTCTTCCEEECTTSEEESTTSSCTT
T ss_pred -cccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-ccc-ccccccccccchhhhhcccccccccccc
Confidence 334567888888888876642 23344556778888888887664 222 234578889999988877654433 457
Q ss_pred cCCccCCeEEcccCCCCCccchhhhccCCCcEEEcccccccc-ccC-CCcccCCcceEeccCCcCCCCCCccccCCCCcc
Q 036588 398 QNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQG-TIP-YAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQ 475 (541)
Q Consensus 398 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 475 (541)
..+++++.++++.|.+....+..+..+++++.|++++|.... ..+ .+..+++|+.|++++|.+....+..+.++++|+
T Consensus 442 ~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~ 521 (635)
T 4g8a_A 442 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 521 (635)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCC
Confidence 788899999999998887777788888999999999887543 233 377888999999999988877888888999999
Q ss_pred EeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCc-cccceEEeeccccc
Q 036588 476 FLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNC-SYLRILVVQFNNFS 534 (541)
Q Consensus 476 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~ 534 (541)
+|++++|++.+ ++...+..+++|+.|++++|.+.+..|+.+..+ ++|+.|++++|++.
T Consensus 522 ~L~Ls~N~l~~-l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 522 VLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp EEECTTSCCCB-CCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred EEECCCCcCCC-CChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 99999998854 555778889999999999999998888888887 58999999988875
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.8e-37 Score=322.59 Aligned_cols=389 Identities=22% Similarity=0.259 Sum_probs=291.4
Q ss_pred CcceEEEecCccccccCCccccCCCCccEEEe-ccCccccc---------------------------------------
Q 036588 137 RNWQQLYLSKNMFYGEIPSDIANCSYLRILVL-QFNNFSGA--------------------------------------- 176 (541)
Q Consensus 137 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l-~~~~i~~~--------------------------------------- 176 (541)
.+++.|+++++.+.+.+|..++.+++|+.|++ ++|.+...
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57888999999999888989999999999999 55532211
Q ss_pred -------------------------------------CCccccccCCCcEEEccCceeee------------------ec
Q 036588 177 -------------------------------------IPKEISNLTKLEKLDLQYNKLQG------------------TI 201 (541)
Q Consensus 177 -------------------------------------~~~~l~~l~~L~~L~l~~~~~~~------------------~~ 201 (541)
+|..++++++|+.|++++|.+.+ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence 56778888888888888888877 45
Q ss_pred cCCC--CcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCc-ccC-cCChhh------hccCCCCcEEEecCccccc
Q 036588 202 PYAG--HLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNR-LSA-ELPTNV------FHNLPFLEELYLSNNMFYG 271 (541)
Q Consensus 202 ~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~------~~~~~~L~~L~l~~~~~~~ 271 (541)
..++ .+++|+.|++++|.+.+.+|..+..+++|+.|++++|. +.+ .+|..+ +..+++|+.|++++|.+.
T Consensus 483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~- 561 (876)
T 4ecn_A 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE- 561 (876)
T ss_dssp SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-
T ss_pred hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-
Confidence 5566 88888888888888777888888888888888888887 654 455432 234558888888888887
Q ss_pred cCCC--CCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCC-CcEEeccCccccCCCCccc
Q 036588 272 EIPS--DTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQ-LQWLDLSDNQLSGSLPSFK 348 (541)
Q Consensus 272 ~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~ 348 (541)
..|. .+..+++|+.|++++|.+. .++ .+..+++|+.|++++|.+......+..+++ |+.|++++|.+. .++..+
T Consensus 562 ~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~ 638 (876)
T 4ecn_A 562 EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIF 638 (876)
T ss_dssp BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCC
T ss_pred ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhh
Confidence 6777 7888888888888888887 555 678888888888888888754445777887 888888888877 555555
Q ss_pred CCCC--cceEEEcccCcCcCcCChhh--h--cCCCCccEEEccCcccccCCCcC-CcCCccCCeEEcccCCCCCccchhh
Q 036588 349 FNMP--LLQFLDLSSNRLSVELPTNV--F--HNLPFLEELYLSNNMFYGEIPSD-TQNCSYLRILVLKFNNFPGAIPKEI 421 (541)
Q Consensus 349 ~~~~--~L~~L~l~~~~~~~~~~~~~--~--~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l 421 (541)
...+ +|+.|++++|.+.+.++... . ..+++|+.|++++|.+. .++.. +..+++|+.|++++|.+.......+
T Consensus 639 ~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~ 717 (876)
T 4ecn_A 639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSL 717 (876)
T ss_dssp CTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSS
T ss_pred hccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHh
Confidence 5554 48888888888765433211 1 13457888888888887 44433 4578888888888888874433333
Q ss_pred h-------ccCCCcEEEccccccccccCCCc--ccCCcceEeccCCcCCCCCCccccCCCCccEeeCCC------Ccccc
Q 036588 422 S-------NLTKLEKLDLQYNRLQGTIPYAG--HLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSS------NRLST 486 (541)
Q Consensus 422 ~-------~~~~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~~ 486 (541)
. +|++|+.|++++|++......+. .+++|+.|++++|.+.. +|..+..+++|+.|++++ |.+.+
T Consensus 718 ~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~ 796 (876)
T 4ecn_A 718 KPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILR 796 (876)
T ss_dssp SCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCC
T ss_pred ccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccc
Confidence 3 23488888888888874444454 78888888888888885 677778888888888866 66666
Q ss_pred ccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeecccccc
Q 036588 487 ELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSG 535 (541)
Q Consensus 487 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 535 (541)
.+| ..+..+++|+.|++++|++ +.+|..+. ++|+.|++++|++..
T Consensus 797 ~ip-~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 797 QWP-TGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp CCC-TTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCE
T ss_pred cCh-HHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCc
Confidence 666 5677788888888888888 47777755 688888888888753
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.4e-36 Score=309.79 Aligned_cols=449 Identities=21% Similarity=0.170 Sum_probs=257.6
Q ss_pred CeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeec
Q 036588 22 RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFL 101 (541)
Q Consensus 22 ~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 101 (541)
..++++++++++++ +|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+.+..|..+.. +++|++|++
T Consensus 32 ~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L 107 (562)
T 3a79_B 32 LESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLF-NQDLEYLDV 107 (562)
T ss_dssp -CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTT-CTTCCEEEC
T ss_pred CCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCC-CCCCCEEEC
Confidence 34899999999995 666554 89999999999998677789999999999999999886554555555 999999999
Q ss_pred cccccCccCCccCCCCCCCcEEecCCCcccc------ccccCcceEEEecCccccccCCccccCCCCc--cEEEeccCcc
Q 036588 102 KSNMFHGKIPSTLSSCKRLRETSLSLNDFFW------DHTKRNWQQLYLSKNMFYGEIPSDIANCSYL--RILVLQFNNF 173 (541)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~i 173 (541)
++|+++ .+|.. .+++|++|+++++.+.. +..+++|+.|++++|.+... .+..+++| +.|++++|.+
T Consensus 108 s~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 108 SHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp TTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred CCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccc
Confidence 999988 45555 78888887777776542 23345666666666665542 33334444 6666666666
Q ss_pred --cccCCccccccCC-CcEEEccCceeeeeccC--CCCcCCCCEEECCCCccc----CCCCcccCCCCCccEEeccCCcc
Q 036588 174 --SGAIPKEISNLTK-LEKLDLQYNKLQGTIPY--AGHLYQLQWLDLSDNQLS----GSLPSFKFKMPLLQFLDLSSNRL 244 (541)
Q Consensus 174 --~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~ 244 (541)
....+..+..+.. ...++++++.+...... +..+++|+.++++++... ......+..+++|+.+.+.++.+
T Consensus 182 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l 261 (562)
T 3a79_B 182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET 261 (562)
T ss_dssp CCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEE
T ss_pred cccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcC
Confidence 4445555554431 11334444443332221 345566666666655310 01112234455666666655544
Q ss_pred cCcCChhh--hccCCCCcEEEecCccccccCCCCC-----cCcccccEEEecccccCCCcc-ccccc---cCCccEEEee
Q 036588 245 SAELPTNV--FHNLPFLEELYLSNNMFYGEIPSDT-----ANCSYLRILVLRFNNFSGAIP-KEISN---LTKLEKLDLQ 313 (541)
Q Consensus 245 ~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~-~~l~~---l~~L~~L~l~ 313 (541)
.+...... ....++|++|++++|.+.+..|..+ ..++.|+.+++..+.+ ..+ ..+.. ..+|+.|+++
T Consensus 262 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~ 339 (562)
T 3a79_B 262 TWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSIS 339 (562)
T ss_dssp CHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEE
T ss_pred cHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEcc
Confidence 32111111 0122366666666666665555544 4444444444444433 111 11111 2456666666
Q ss_pred CCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCCh--hhhcCCCCccEEEccCccccc
Q 036588 314 YNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPT--NVFHNLPFLEELYLSNNMFYG 391 (541)
Q Consensus 314 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~ 391 (541)
+|.+.... ....+++|++|++++|.+....+..+..+++|+.|++++|.++ .++. ..+..+++|+.|++++|.+.+
T Consensus 340 ~n~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~l~~L~~L~l~~N~l~~ 417 (562)
T 3a79_B 340 DTPFIHMV-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNS 417 (562)
T ss_dssp SSCCCCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCC-BTTHHHHTTTTCTTCCEEECTTSCCBS
T ss_pred CCCccccc-CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcC-CcccchhhhcCCCCCCEEECCCCcCCC
Confidence 66553221 1245566666666666666555555666666666666666664 2221 234456666666666666654
Q ss_pred CCC-cCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccC
Q 036588 392 EIP-SDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFK 470 (541)
Q Consensus 392 ~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 470 (541)
.++ ..+..+++|++|++++|.+++..+..+. ++|+.|++++|++....+.+..+++|+.|++++|.+....+..+..
T Consensus 418 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 495 (562)
T 3a79_B 418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDR 495 (562)
T ss_dssp CCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTT
T ss_pred ccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhc
Confidence 233 2355566666666666665543333222 4666666666665543333445666666666666665322223555
Q ss_pred CCCccEeeCCCCcccc
Q 036588 471 MPLLQFLDLSSNRLST 486 (541)
Q Consensus 471 ~~~L~~L~l~~~~~~~ 486 (541)
+++|+.|++++|++.+
T Consensus 496 l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 496 LTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CTTCCCEECCSCCBCC
T ss_pred CCCCCEEEecCCCcCC
Confidence 6666666666666544
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.7e-37 Score=314.06 Aligned_cols=456 Identities=18% Similarity=0.126 Sum_probs=249.5
Q ss_pred cCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCc
Q 036588 42 GNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLR 121 (541)
Q Consensus 42 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 121 (541)
..+...++++++++.++ .+|..+. ++|++|++++|.+. .++...+.++++|++|++++|.++...|..|.++++|+
T Consensus 28 ~~~~~~~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 103 (562)
T 3a79_B 28 FSNELESMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLE 103 (562)
T ss_dssp -----CCEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred cccCCCcEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCC
Confidence 33455589999999998 6887664 89999999999985 45544344499999999999999988899999999999
Q ss_pred EEecCCCcccccc--ccCcceEEEecCcccccc-CCccccCCCCccEEEeccCcccccCCccccccCCC--cEEEccCce
Q 036588 122 ETSLSLNDFFWDH--TKRNWQQLYLSKNMFYGE-IPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKL--EKLDLQYNK 196 (541)
Q Consensus 122 ~l~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L--~~L~l~~~~ 196 (541)
+|+++++.+.... .+++|++|++++|.+.+. .+..+..+++|++|++++|.+... .+..+++| ++|++++|.
T Consensus 104 ~L~Ls~N~l~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 104 YLDVSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp EEECTTSCCCEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESS
T ss_pred EEECCCCcCCccCccccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccc
Confidence 9888777654221 345566666666665542 234556666666666666555432 23333333 666665554
Q ss_pred e--eeeccC-CCCcC--CCCEEECCCCcccCCCCc-ccCCCCCccEEeccCCcccC---cCChhhhccCCCCcEEEecCc
Q 036588 197 L--QGTIPY-AGHLY--QLQWLDLSDNQLSGSLPS-FKFKMPLLQFLDLSSNRLSA---ELPTNVFHNLPFLEELYLSNN 267 (541)
Q Consensus 197 ~--~~~~~~-~~~~~--~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~~L~~L~l~~~ 267 (541)
+ ....+. +..+. .+ .++++++.+....+. .+..+++|+.++++++...- ......+..+++|+.+++.++
T Consensus 181 l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~ 259 (562)
T 3a79_B 181 YHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI 259 (562)
T ss_dssp CCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEE
T ss_pred ccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCC
Confidence 4 221111 11111 11 233344443322221 22334555555555542100 000112344445555544443
Q ss_pred cccccC----CCCCcCcccccEEEecccccCCCccccc-----cccCCccEEEeeCCcccccccc-ccccCCCcEEeccC
Q 036588 268 MFYGEI----PSDTANCSYLRILVLRFNNFSGAIPKEI-----SNLTKLEKLDLQYNRLQGTILY-VGHLLQLQWLDLSD 337 (541)
Q Consensus 268 ~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~ 337 (541)
.+.+.. +.. ...++|++|++++|.+....+..+ ..++.|+.+++..+.+ ..... +..
T Consensus 260 ~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~----------- 326 (562)
T 3a79_B 260 ETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYS----------- 326 (562)
T ss_dssp EECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHH-----------
T ss_pred cCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhh-----------
Confidence 322110 000 011245555555544443333322 2233333333332222 00000 000
Q ss_pred ccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCcc
Q 036588 338 NQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAI 417 (541)
Q Consensus 338 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 417 (541)
+....+|++|++++|.+.. .. ....+++|++|++++|.+.+..+..+..+++|++|++++|++....
T Consensus 327 ----------~~~~~~L~~L~l~~n~~~~-~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 393 (562)
T 3a79_B 327 ----------VFAEMNIKMLSISDTPFIH-MV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF 393 (562)
T ss_dssp ----------HHHTCCCSEEEEESSCCCC-CC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTT
T ss_pred ----------hhccCcceEEEccCCCccc-cc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcc
Confidence 0011345666666655431 11 1135666777777777666555666667777777777777666422
Q ss_pred --chhhhccCCCcEEEccccccccccCC--CcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccc
Q 036588 418 --PKEISNLTKLEKLDLQYNRLQGTIPY--AGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVF 493 (541)
Q Consensus 418 --~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 493 (541)
+..+..+++|+.|++++|.+....+. +..+++|+.|++++|.+....+..+. ++|++|++++|.+ +.+|...+
T Consensus 394 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l-~~ip~~~~ 470 (562)
T 3a79_B 394 KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRI-MSIPKDVT 470 (562)
T ss_dssp HHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCC-CCCCTTTT
T ss_pred cchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcC-cccChhhc
Confidence 34566677777777777776652332 55567777777777766543333322 5777777777776 34664433
Q ss_pred cCCcccceeeeccceecccCCCC-CCCccccceEEeeccccccc
Q 036588 494 HNLPFLEELYLSNNMFYGEIPSD-TPNCSYLRILVVQFNNFSGA 536 (541)
Q Consensus 494 ~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~ 536 (541)
.+++|+.|++++|.+. .+|.. +..+++|+.|++++|++.+.
T Consensus 471 -~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 471 -HLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp -SSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred -CCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 6777777777777777 44444 77777777777777776643
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.9e-35 Score=307.55 Aligned_cols=500 Identities=21% Similarity=0.195 Sum_probs=333.7
Q ss_pred cCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccccccCc
Q 036588 29 SGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHG 108 (541)
Q Consensus 29 ~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 108 (541)
++.+++ .+|..+- +++++|||++|.++...+.+|.++++|++|++++|.+ +.++...+.++++|++|++++|+++.
T Consensus 39 ~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i-~~i~~~~f~~L~~L~~L~Ls~N~l~~ 114 (635)
T 4g8a_A 39 MELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQS 114 (635)
T ss_dssp TTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC-CEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred CCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC-CCcChhHhcCCCCCCEEEccCCcCCC
Confidence 444555 4555442 4799999999999966667899999999999999998 45666666669999999999999997
Q ss_pred cCCccCCCCCCCcEEecCCCcccc-----ccccCcceEEEecCcccccc-CCccccCCCCccEEEeccCcccccCCcccc
Q 036588 109 KIPSTLSSCKRLRETSLSLNDFFW-----DHTKRNWQQLYLSKNMFYGE-IPSDIANCSYLRILVLQFNNFSGAIPKEIS 182 (541)
Q Consensus 109 ~~~~~~~~l~~L~~l~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~ 182 (541)
..+..|.++++|++|+++++.+.. +..+++|++|++++|.+... .+..+..+++|+.|++++|.+....+..+.
T Consensus 115 l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 194 (635)
T 4g8a_A 115 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 194 (635)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc
Confidence 777889999999997777665542 23345555666655555432 344455555566666655555544444444
Q ss_pred ccCCCc----EEEccCceeeeeccCCCCcCCCCEEECCCCcccC-CCCcccCCCCCccEEeccCCccc-----CcCChhh
Q 036588 183 NLTKLE----KLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSG-SLPSFKFKMPLLQFLDLSSNRLS-----AELPTNV 252 (541)
Q Consensus 183 ~l~~L~----~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~ 252 (541)
.+.+++ .++++.+.+....+.......++.+++.++.... ..+..+..++.++...+...... .......
T Consensus 195 ~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~ 274 (635)
T 4g8a_A 195 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 274 (635)
T ss_dssp HHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTT
T ss_pred chhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccc
Confidence 433322 3445555444443333333344444444432210 11122333344443333221110 1111122
Q ss_pred hccCCCCcEEEecCccc---cccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCC
Q 036588 253 FHNLPFLEELYLSNNMF---YGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQ 329 (541)
Q Consensus 253 ~~~~~~L~~L~l~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 329 (541)
+.....+....+..... .......+....+++.+.+.++.+... ..+.....++.|++.++.+.... ...++.
T Consensus 275 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~ 350 (635)
T 4g8a_A 275 LEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFP--TLKLKS 350 (635)
T ss_dssp TGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCC--CCBCTT
T ss_pred cccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcC--cccchh
Confidence 23333344333332211 112334455566777777776655432 23455677888888888765332 234567
Q ss_pred CcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCc-CChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEc
Q 036588 330 LQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVE-LPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVL 408 (541)
Q Consensus 330 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 408 (541)
++.+.+..+...... ....+++|+.+.+++|.+... .....+..+.+|+.+++..+... ..+..+..+++|+.+++
T Consensus 351 L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l 427 (635)
T 4g8a_A 351 LKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDF 427 (635)
T ss_dssp CCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEEC
T ss_pred hhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhh
Confidence 888888777655322 234688999999999877421 12233447889999999988876 34556888999999999
Q ss_pred ccCCCCCc-cchhhhccCCCcEEEccccccccccCC-CcccCCcceEeccCCcCCC-CCCccccCCCCccEeeCCCCccc
Q 036588 409 KFNNFPGA-IPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSG-SLPSFKFKMPLLQFLDLSSNRLS 485 (541)
Q Consensus 409 ~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~ 485 (541)
..+..... ....+..+++++.+++++|.+....+. +..++.++.|++++|.... ..+..+..+++|++|++++|++.
T Consensus 428 ~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~ 507 (635)
T 4g8a_A 428 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 507 (635)
T ss_dssp TTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred hhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccC
Confidence 88765443 345678899999999999998866655 6778999999999997543 56778899999999999999996
Q ss_pred cccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeecccccccCCCC
Q 036588 486 TELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIPKE 540 (541)
Q Consensus 486 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~ 540 (541)
+ ++...|.++++|++|++++|.+.+..+..|..+++|+.|++++|++++..|+.
T Consensus 508 ~-l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 561 (635)
T 4g8a_A 508 Q-LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 561 (635)
T ss_dssp E-ECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSC
T ss_pred C-cChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHH
Confidence 5 54478899999999999999999888888999999999999999999887764
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3e-35 Score=292.71 Aligned_cols=358 Identities=23% Similarity=0.194 Sum_probs=181.6
Q ss_pred CeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCcc-chhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEee
Q 036588 22 RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSI-PASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLF 100 (541)
Q Consensus 22 ~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 100 (541)
++++|+++++.+++..|..|+++++|++|++++|.+.+.+ +..|.++++|++|++++|.+.+..|..+.. +++|++|+
T Consensus 31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~ 109 (455)
T 3v47_A 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNG-LANLEVLT 109 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTT-CTTCCEEE
T ss_pred ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccC-cccCCEEe
Confidence 4555555555555544555555555555555555544222 344555555555555555553333333333 55555555
Q ss_pred ccccccCccCCcc--CCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCcc-ccCCCCccEEEeccCcccccC
Q 036588 101 LKSNMFHGKIPST--LSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSD-IANCSYLRILVLQFNNFSGAI 177 (541)
Q Consensus 101 l~~~~~~~~~~~~--~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~i~~~~ 177 (541)
+++|.+++..+.. +.++++|++ |++++|.+.+..+.. +..+++|++|++++|.+....
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~-------------------L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEM-------------------LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCE-------------------EECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred CCCCCCCccccCcccccCcccCCE-------------------EECCCCccCccCcccccCCCCcccEEeCCCCcccccC
Confidence 5555554322222 444444444 555555555444443 556666666666666665555
Q ss_pred Ccccccc--CCCcEEEccCceeeeeccC---------CCCcCCCCEEECCCCcccCCCCcccCC---CCCccEEeccCCc
Q 036588 178 PKEISNL--TKLEKLDLQYNKLQGTIPY---------AGHLYQLQWLDLSDNQLSGSLPSFKFK---MPLLQFLDLSSNR 243 (541)
Q Consensus 178 ~~~l~~l--~~L~~L~l~~~~~~~~~~~---------~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~L~~L~l~~~~ 243 (541)
+..+..+ .+|+.|+++++.+.+.... +..+++|+.|++++|.+.+..+..+.. .++|+.++++++.
T Consensus 171 ~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 250 (455)
T 3v47_A 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250 (455)
T ss_dssp TTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCT
T ss_pred hhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccc
Confidence 5555444 4555566655554432221 123344555555555444332222211 2445555555443
Q ss_pred ccCcCChhhhccCCCCcEEEecCccccccCCCCCcC--cccccEEEecccccCCCccccccccCCccEEEeeCCcccccc
Q 036588 244 LSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTAN--CSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTI 321 (541)
Q Consensus 244 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 321 (541)
..+.... ...+.......+.. .++|+.|++++|.+....+..+..+++|+.|++++|.+....
T Consensus 251 ~~~~~~~---------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 315 (455)
T 3v47_A 251 NMGSSFG---------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID 315 (455)
T ss_dssp TTSCCTT---------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred ccccccc---------------hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC
Confidence 2211000 00000011111111 245556666655555444555555566666666666555443
Q ss_pred c-cccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCC
Q 036588 322 L-YVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNC 400 (541)
Q Consensus 322 ~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 400 (541)
+ .+..+++|++|++++|.+....+..+..+++|++|++++|.++ .+....+..+++|++|++.+|++.+..+..+..+
T Consensus 316 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 394 (455)
T 3v47_A 316 DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL 394 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred hhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCccc-ccChhhccccccccEEECCCCccccCCHhHhccC
Confidence 3 2555566666666666555444555566666666666666665 3333445566777777777776665444456667
Q ss_pred ccCCeEEcccCCCCC
Q 036588 401 SYLRILVLKFNNFPG 415 (541)
Q Consensus 401 ~~L~~L~l~~~~~~~ 415 (541)
++|++|++++|++..
T Consensus 395 ~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 395 TSLQKIWLHTNPWDC 409 (455)
T ss_dssp TTCCEEECCSSCBCC
T ss_pred CcccEEEccCCCccc
Confidence 777777777776654
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.4e-34 Score=286.19 Aligned_cols=375 Identities=22% Similarity=0.223 Sum_probs=227.6
Q ss_pred EEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccccc
Q 036588 26 LNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNM 105 (541)
Q Consensus 26 L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 105 (541)
++.++.+++ .+|. + .++|++|++++|.+++..|..|.++++|++|++++|.+.+.++...+.++++|++|++++|.
T Consensus 15 ~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 15 AICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp EECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred cCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 444455666 4555 3 38899999999999977799999999999999999988666766655569999999999999
Q ss_pred cCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCC--ccccCCCCccEEEeccCcccccCCcc-cc
Q 036588 106 FHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIP--SDIANCSYLRILVLQFNNFSGAIPKE-IS 182 (541)
Q Consensus 106 ~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~i~~~~~~~-l~ 182 (541)
+....|..++++++|++| ++++|.+.+..+ ..+..+++|++|++++|.+....+.. +.
T Consensus 91 l~~~~~~~~~~l~~L~~L-------------------~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 151 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVL-------------------TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151 (455)
T ss_dssp TCEECTTTTTTCTTCCEE-------------------ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGG
T ss_pred cCccChhhccCcccCCEE-------------------eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccC
Confidence 998888999999998885 444555554333 33888999999999999998776765 78
Q ss_pred ccCCCcEEEccCceeeeeccC-CCCc--CCCCEEECCCCcccCCCCcc--------cCCCCCccEEeccCCcccCcCChh
Q 036588 183 NLTKLEKLDLQYNKLQGTIPY-AGHL--YQLQWLDLSDNQLSGSLPSF--------KFKMPLLQFLDLSSNRLSAELPTN 251 (541)
Q Consensus 183 ~l~~L~~L~l~~~~~~~~~~~-~~~~--~~L~~L~l~~~~~~~~~~~~--------~~~~~~L~~L~l~~~~~~~~~~~~ 251 (541)
.+++|++|++++|.+.+..+. +..+ .+|+.|+++++.+....+.. +..+++|++|++++|.+.+..+..
T Consensus 152 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 231 (455)
T 3v47_A 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR 231 (455)
T ss_dssp GCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHH
T ss_pred CCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhh
Confidence 899999999999988765543 4443 67888888888876544332 224567777777777665444433
Q ss_pred hhcc--CCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCcccccc--ccCCccEEEeeCCcccccccc-ccc
Q 036588 252 VFHN--LPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEIS--NLTKLEKLDLQYNRLQGTILY-VGH 326 (541)
Q Consensus 252 ~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~-~~~ 326 (541)
++.. .++|+.|++.++....... . ...+.......+. ..++|+.|++++|.+....+. +..
T Consensus 232 ~~~~~~~~~L~~L~l~~~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 297 (455)
T 3v47_A 232 FFDAIAGTKIQSLILSNSYNMGSSF-G-------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH 297 (455)
T ss_dssp HHHHTTTCCEEEEECTTCTTTSCCT-T-------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT
T ss_pred hhccccccceeeEeecccccccccc-c-------------hhhhccCcccccccccccCceEEEecCccccccchhhccc
Confidence 3221 2556666666554332110 0 0001101111111 124556666665555433322 444
Q ss_pred cCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeE
Q 036588 327 LLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRIL 406 (541)
Q Consensus 327 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 406 (541)
+++|++|++++|.+....+..+..+++|++|++++|.++ .+....+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 298 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 376 (455)
T 3v47_A 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL 376 (455)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccC-CcChhHhcCcccCCEEECCCCcccccChhhccccccccEE
Confidence 555555555555554444444444555555555555443 2333333444444444444444443334444444444444
Q ss_pred EcccCCCCCccchhhhccCCCcEEEccccccc
Q 036588 407 VLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQ 438 (541)
Q Consensus 407 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 438 (541)
++++|++....+..+..+++|+.|++++|++.
T Consensus 377 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 377 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 44444444433333444444444444444443
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.4e-34 Score=281.22 Aligned_cols=419 Identities=24% Similarity=0.243 Sum_probs=156.0
Q ss_pred CCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEE
Q 036588 44 LSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRET 123 (541)
Q Consensus 44 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 123 (541)
.++|++|+++++.+ +.+|.+++++++|++|++++|.+.+.+|..++. +++|+++++..|.. .+++++
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~-l~~L~~l~l~~c~~-----------~~l~~L 76 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGE-QREMAVSRLRDCLD-----------RQAHEL 76 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCC-CHHHHHHHHHHHHH-----------HTCSEE
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCccccc-chhcchhhhhhhhc-----------cCCCEE
Confidence 46777777777777 477777777777777777777766666766665 66665555544432 234444
Q ss_pred ecCCCcccccc-ccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceeeeecc
Q 036588 124 SLSLNDFFWDH-TKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIP 202 (541)
Q Consensus 124 ~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 202 (541)
+++++.+.... .+++|+.|++++|.+.+ ++.. .++|+.|++++|.+.. ++.. .++|++|++++|.+.+. +
T Consensus 77 ~l~~~~l~~lp~~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~l-p 147 (454)
T 1jl5_A 77 ELNNLGLSSLPELPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEKL-P 147 (454)
T ss_dssp ECTTSCCSCCCSCCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSSC-C
T ss_pred EecCCccccCCCCcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCCC-c
Confidence 44444433211 12345555555555554 2321 2556666666555542 1111 14555566655555542 2
Q ss_pred CCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCccc
Q 036588 203 YAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSY 282 (541)
Q Consensus 203 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 282 (541)
.++.+++|++|++++|.+.+ +|.. .++|++|++++|.+.+ ++ .+..+++|+.|++++|.+.+ .+.. .++
T Consensus 148 ~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~--~~~~l~~L~~L~l~~N~l~~-l~~~---~~~ 216 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP--ELQNLPFLTAIYADNNSLKK-LPDL---PLS 216 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSS-CCCC---CTT
T ss_pred ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc--cccCCCCCCEEECCCCcCCc-CCCC---cCc
Confidence 45555555555555555542 2222 2355555555555432 32 13455555555555555442 2211 134
Q ss_pred ccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccC
Q 036588 283 LRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSN 362 (541)
Q Consensus 283 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 362 (541)
|++|++++|.+. .++ .+..+++|+.|++++|.+..... ..++|+.|++++|.+.. ++. ..++|+.|++++|
T Consensus 217 L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~N~l~~-l~~---~~~~L~~L~ls~N 287 (454)
T 1jl5_A 217 LESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLTD-LPE---LPQSLTFLDVSEN 287 (454)
T ss_dssp CCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSS
T ss_pred ccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcccc---cccccCEEECCCCcccc-cCc---ccCcCCEEECcCC
Confidence 555555555544 223 24455555555555554442211 12445555555554442 111 1244555555554
Q ss_pred cCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCC-ccCCeEEcccCCCCCccchhhhccCCCcEEEcccccccccc
Q 036588 363 RLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNC-SYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTI 441 (541)
Q Consensus 363 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 441 (541)
.+++ ++. ..++|+.|++++|.+.+. ..+ ++|++|++++|++.+ .+.. +++|+.|++++|++...
T Consensus 288 ~l~~-l~~----~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~l- 352 (454)
T 1jl5_A 288 IFSG-LSE----LPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEV- 352 (454)
T ss_dssp CCSE-ESC----CCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-
T ss_pred ccCc-ccC----cCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccc-
Confidence 4431 111 113444555544444321 111 244444554444442 1111 24444444444444421
Q ss_pred CCCcccCCcceEeccCCcCCC--CCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecc--cCCCCC
Q 036588 442 PYAGHLFQLQWLDLSDNQLSG--SLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYG--EIPSDT 517 (541)
Q Consensus 442 ~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~ 517 (541)
+. .+++|+.|++++|.+.. .+|..+ ..|. .|...+.++. .+++|+.|++++|++.+ .+|
T Consensus 353 p~--~l~~L~~L~L~~N~l~~l~~ip~~l------~~L~--~n~~~~~i~~----~~~~L~~L~ls~N~l~~~~~iP--- 415 (454)
T 1jl5_A 353 PE--LPQNLKQLHVEYNPLREFPDIPESV------EDLR--MNSHLAEVPE----LPQNLKQLHVETNPLREFPDIP--- 415 (454)
T ss_dssp CC--CCTTCCEEECCSSCCSSCCCCCTTC------CEEE--CCC------------------------------------
T ss_pred cc--hhhhccEEECCCCCCCcCCCChHHH------Hhhh--hccccccccc----ccCcCCEEECCCCcCCccccch---
Confidence 11 23444444444444443 222221 1111 1222222221 12678888888888774 233
Q ss_pred CCccccceEEeecccccccCCC
Q 036588 518 PNCSYLRILVVQFNNFSGAIPK 539 (541)
Q Consensus 518 ~~~~~L~~L~l~~~~~~~~~p~ 539 (541)
++++.|.+.+|.+.+.+|-
T Consensus 416 ---~sl~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 416 ---ESVEDLRMNSERVVDPYEF 434 (454)
T ss_dssp ----------------------
T ss_pred ---hhHhheeCcCcccCCcccc
Confidence 3466677777777766654
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.8e-33 Score=275.63 Aligned_cols=345 Identities=26% Similarity=0.289 Sum_probs=266.0
Q ss_pred cCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceeeeeccCCCCcCCCCEEEC
Q 036588 136 KRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDL 215 (541)
Q Consensus 136 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 215 (541)
.++++.|++.++.+.. ++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh-hcCCCCCCEEEC
Confidence 4678889999888775 33 478889999999999988744 33 8888999999999998886665 888999999999
Q ss_pred CCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCC
Q 036588 216 SDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSG 295 (541)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 295 (541)
++|.+.... . +..+++|++|++++|.+.+ ++ .+..+++|+.|++.+ .+... ..+..+++|+.|++++|.+..
T Consensus 120 ~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l~~ 191 (466)
T 1o6v_A 120 FNNQITDID-P-LKNLTNLNRLELSSNTISD-IS--ALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNKVSD 191 (466)
T ss_dssp CSSCCCCCG-G-GTTCTTCSEEEEEEEEECC-CG--GGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCCCh-H-HcCCCCCCEEECCCCccCC-Ch--hhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCcCCC
Confidence 998887543 2 7788999999999988753 33 367888999999864 33322 237788899999999888764
Q ss_pred CccccccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcC
Q 036588 296 AIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHN 375 (541)
Q Consensus 296 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 375 (541)
. ..+..+++|+.|++++|.+....+ +..+++|++|++++|.+... ..+..+++|+.|++++|.+++..+ +..
T Consensus 192 ~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~ 263 (466)
T 1o6v_A 192 I--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP---LSG 263 (466)
T ss_dssp C--GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GTT
T ss_pred C--hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh---hhc
Confidence 3 347788899999999888765443 67788899999988887643 356678888888888888763322 567
Q ss_pred CCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEec
Q 036588 376 LPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDL 455 (541)
Q Consensus 376 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 455 (541)
+++|+.|++++|.+.+.. .+..+++|++|++++|++....+ +..+++|+.|++++|++.+..+ +..+++|+.|++
T Consensus 264 l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l 338 (466)
T 1o6v_A 264 LTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFF 338 (466)
T ss_dssp CTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEEC
T ss_pred CCCCCEEECCCCccCccc--cccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeEC
Confidence 888888888888876432 27788888888888888875443 7788888888888888775544 667888888888
Q ss_pred cCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecc
Q 036588 456 SDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYG 511 (541)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 511 (541)
++|.+... ..+..+++|+.|++++|++.+..+ +..+++|+.|++++|++.+
T Consensus 339 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 339 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG---GTTCTTCCEEECCCEEEEC
T ss_pred CCCccCCc--hhhccCCCCCEEeCCCCccCccch---hhcCCCCCEEeccCCcccC
Confidence 88887754 467788888888888888865443 6778888888888888885
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.7e-33 Score=275.59 Aligned_cols=405 Identities=25% Similarity=0.328 Sum_probs=239.1
Q ss_pred CCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCC-------------cEEEeecCccCCCCC
Q 036588 20 TYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSL-------------LSINFINNALFGELP 86 (541)
Q Consensus 20 ~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L-------------~~L~l~~~~~~~~~~ 86 (541)
..+|++|+++++++ +.+|++|+++++|++|++++|.+.+.+|..++++++| ++|++++|.+ +.+|
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l-~~lp 87 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL-SSLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC-SCCC
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcc-ccCC
Confidence 45899999999999 5899999999999999999999988999998887765 9999999987 4555
Q ss_pred hhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCcccccccc-CcceEEEecCccccccCCccccCCCCccE
Q 036588 87 PNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTK-RNWQQLYLSKNMFYGEIPSDIANCSYLRI 165 (541)
Q Consensus 87 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 165 (541)
.. .++|++|+++++.+++ +|.. +++|++++++++.+...... ++|++|++++|.+.+ +| .+..+++|++
T Consensus 88 ~~----~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~ 157 (454)
T 1jl5_A 88 EL----PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKI 157 (454)
T ss_dssp SC----CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCE
T ss_pred CC----cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCE
Confidence 52 5899999999998885 5543 47889999988877755444 688888888888875 55 5888888888
Q ss_pred EEeccCcccccCCccccccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCccc
Q 036588 166 LVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLS 245 (541)
Q Consensus 166 L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 245 (541)
|++++|.+.. +|..+ .+|++|++++|.+.+. +.+..+++|+.|++++|.+.+ ++.. .++|++|++++|.+.
T Consensus 158 L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~l-~~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 158 IDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEEL-PELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE 228 (454)
T ss_dssp EECCSSCCSC-CCCCC---TTCCEEECCSSCCSSC-CCCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS
T ss_pred EECCCCcCcc-cCCCc---ccccEEECcCCcCCcC-ccccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC
Confidence 8888888773 44432 4888888888887764 467888888888888887764 3332 257888888888775
Q ss_pred CcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCcccccccccc
Q 036588 246 AELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVG 325 (541)
Q Consensus 246 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 325 (541)
.++. +..+++|+.|++++|.+.+ .+. ..++|++|++++|.+.. .+.. .++|+.|++++|.+.... .
T Consensus 229 -~lp~--~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~-~-- 294 (454)
T 1jl5_A 229 -ELPE--LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLS-E-- 294 (454)
T ss_dssp -SCCC--CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEES-C--
T ss_pred -cccc--cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCccc-C--
Confidence 5553 5778888888888887764 332 23678888888887764 3322 367888888888766422 1
Q ss_pred ccCCCcEEeccCccccCCCCcccCCC-CcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCC
Q 036588 326 HLLQLQWLDLSDNQLSGSLPSFKFNM-PLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLR 404 (541)
Q Consensus 326 ~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 404 (541)
..++|++|++++|.+... ... ++|+.|++++|.++ .++. .+++|+.|++++|.+. .++. .+++|+
T Consensus 295 ~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~-~lp~----~~~~L~~L~L~~N~l~-~lp~---~l~~L~ 360 (454)
T 1jl5_A 295 LPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLI-ELPA----LPPRLERLIASFNHLA-EVPE---LPQNLK 360 (454)
T ss_dssp CCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS-CCCC---CCTTCC
T ss_pred cCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCccc-cccc----cCCcCCEEECCCCccc-cccc---hhhhcc
Confidence 125788888888776631 122 47888888888776 3433 2577888888888776 3333 467788
Q ss_pred eEEcccCCCCC--ccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCC--CCCccccCCCCccEeeCC
Q 036588 405 ILVLKFNNFPG--AIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSG--SLPSFKFKMPLLQFLDLS 480 (541)
Q Consensus 405 ~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~ 480 (541)
+|++++|++.+ ..|..+.. +. .+...+..+. .+++|+.|++++|.+.. .+| ++++.|.+.
T Consensus 361 ~L~L~~N~l~~l~~ip~~l~~------L~--~n~~~~~i~~--~~~~L~~L~ls~N~l~~~~~iP------~sl~~L~~~ 424 (454)
T 1jl5_A 361 QLHVEYNPLREFPDIPESVED------LR--MNSHLAEVPE--LPQNLKQLHVETNPLREFPDIP------ESVEDLRMN 424 (454)
T ss_dssp EEECCSSCCSSCCCCCTTCCE------EE--CCC----------------------------------------------
T ss_pred EEECCCCCCCcCCCChHHHHh------hh--hccccccccc--ccCcCCEEECCCCcCCccccch------hhHhheeCc
Confidence 88888887765 33443332 22 2322222222 34789999999998874 333 357778888
Q ss_pred CCccccccC
Q 036588 481 SNRLSTELP 489 (541)
Q Consensus 481 ~~~~~~~~~ 489 (541)
+|.+.+.++
T Consensus 425 ~~~~~~~~~ 433 (454)
T 1jl5_A 425 SERVVDPYE 433 (454)
T ss_dssp ---------
T ss_pred CcccCCccc
Confidence 887755443
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.7e-32 Score=268.51 Aligned_cols=343 Identities=27% Similarity=0.328 Sum_probs=253.6
Q ss_pred CCCCCcEEecCCCccc---cccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEc
Q 036588 116 SCKRLRETSLSLNDFF---WDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDL 192 (541)
Q Consensus 116 ~l~~L~~l~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l 192 (541)
.+++++.+++.++.+. ....+++|++|++++|.+.+..+ +..+++|++|++++|.+....+ ++.+++|++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L 119 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred HhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence 3567778888777654 33456788888888888876543 7888888888888888774432 788888888888
Q ss_pred cCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCcccccc
Q 036588 193 QYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGE 272 (541)
Q Consensus 193 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 272 (541)
++|.+.+..+ +..+++|++|++++|.+.. .+ .+..+++|+.|+++++ +.. .+ .+..+++|+.|++++|.+...
T Consensus 120 ~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~~-~~~-~~--~~~~l~~L~~L~l~~n~l~~~ 192 (466)
T 1o6v_A 120 FNNQITDIDP-LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGNQ-VTD-LK--PLANLTTLERLDISSNKVSDI 192 (466)
T ss_dssp CSSCCCCCGG-GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEES-CCC-CG--GGTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCCChH-HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCCc-ccC-ch--hhccCCCCCEEECcCCcCCCC
Confidence 8887775543 7788888888888887764 22 4677888888888643 221 22 257788888888888877543
Q ss_pred CCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCC
Q 036588 273 IPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMP 352 (541)
Q Consensus 273 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 352 (541)
..+..+++|++|++++|.+....+ +..+++|+.|++++|.+... ..+..+++|+.|++++|.+....+ +..++
T Consensus 193 --~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~ 265 (466)
T 1o6v_A 193 --SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP--LSGLT 265 (466)
T ss_dssp --GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCT
T ss_pred --hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchh--hhcCC
Confidence 346778888888888888775433 66788888888888877643 457778888888888888764433 66788
Q ss_pred cceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEc
Q 036588 353 LLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDL 432 (541)
Q Consensus 353 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 432 (541)
+|+.|++++|.+++ .+. +..+++|+.|++++|++.+.. .+..+++|++|++++|.+.+..+ +..+++|+.|++
T Consensus 266 ~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 338 (466)
T 1o6v_A 266 KLTELKLGANQISN-ISP--LAGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 338 (466)
T ss_dssp TCSEEECCSSCCCC-CGG--GTTCTTCSEEECCSSCCSCCG--GGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEEC
T ss_pred CCCEEECCCCccCc-ccc--ccCCCccCeEEcCCCcccCch--hhcCCCCCCEEECcCCcCCCchh--hccCccCCEeEC
Confidence 88888888888763 332 557888888888888876432 36778888888888888876544 677888888888
Q ss_pred cccccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCcccc
Q 036588 433 QYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLST 486 (541)
Q Consensus 433 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 486 (541)
++|++.+. +.+..+++|+.|++++|.+.+..| +..+++|+.|++++|++.+
T Consensus 339 ~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 339 YNNKVSDV-SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CSSCCCCC-GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCccCCc-hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 88887754 556778888888888888876555 6778888888888888754
No 31
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=8.3e-33 Score=259.42 Aligned_cols=268 Identities=31% Similarity=0.491 Sum_probs=204.7
Q ss_pred CCCCCCCccc--cceeeeCCCC--CCeEEEEecCCccee--eeCCcccCCCCCcEecccc-cccCCccchhhhhcCCCcE
Q 036588 1 NWNTSSSVCN--WTGITCDVRT--YRVTALNISGLNLTV--TIPSELGNLSSLQTLDLSF-NWFSGSIPASIFNMSSLLS 73 (541)
Q Consensus 1 ~~~~~~~~~~--~~~~~~~~~~--~~l~~L~l~~~~i~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~ 73 (541)
+|+.+.++|. |.|+.|+... .+|++|+++++.+++ .+|..|+++++|++|++++ +.+.+.+|..+.++++|++
T Consensus 26 ~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~ 105 (313)
T 1ogq_A 26 SWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105 (313)
T ss_dssp TCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSE
T ss_pred CCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCE
Confidence 5998889998 9999998654 799999999999998 8999999999999999995 8888889999999999999
Q ss_pred EEeecCccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccC
Q 036588 74 INFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEI 153 (541)
Q Consensus 74 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 153 (541)
|++++|.+.+.+|..+.. +++|++|++++|.+....|..+.++++|++ |++++|.+.+.+
T Consensus 106 L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~-------------------L~L~~N~l~~~~ 165 (313)
T 1ogq_A 106 LYITHTNVSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSISSLPNLVG-------------------ITFDGNRISGAI 165 (313)
T ss_dssp EEEEEECCEEECCGGGGG-CTTCCEEECCSSEEESCCCGGGGGCTTCCE-------------------EECCSSCCEEEC
T ss_pred EECcCCeeCCcCCHHHhC-CCCCCEEeCCCCccCCcCChHHhcCCCCCe-------------------EECcCCcccCcC
Confidence 999999997788888877 999999999999998888888888888888 455555566566
Q ss_pred CccccCCC-CccEEEeccCcccccCCccccccCCCcEEEccCceeeeeccC-CCCcCCCCEEECCCCcccCCCCcccCCC
Q 036588 154 PSDIANCS-YLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPY-AGHLYQLQWLDLSDNQLSGSLPSFKFKM 231 (541)
Q Consensus 154 ~~~~~~~~-~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 231 (541)
|..+..++ +|+.|++++|.+....+..+..++ |++|++++|.+.+..+. +..+++|+.|++++|.+....+. +..+
T Consensus 166 p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l 243 (313)
T 1ogq_A 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLS 243 (313)
T ss_dssp CGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCC
T ss_pred CHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-cccc
Confidence 77777776 788888888887777777777776 88888877777654443 66677777777777776543333 4556
Q ss_pred CCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccc
Q 036588 232 PLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNN 292 (541)
Q Consensus 232 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 292 (541)
++|++|++++|.+.+.++.. +..+++|+.|++++|.+.+..|.. ..+++|+.+++.+|.
T Consensus 244 ~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 244 KNLNGLDLRNNRIYGTLPQG-LTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp TTCCEEECCSSCCEECCCGG-GGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred CCCCEEECcCCcccCcCChH-HhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 66666666666664444433 355666666666666665555544 555666666665554
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.7e-31 Score=261.65 Aligned_cols=234 Identities=23% Similarity=0.180 Sum_probs=148.9
Q ss_pred ccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCccccccc
Q 036588 56 WFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHT 135 (541)
Q Consensus 56 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 135 (541)
......+..+.++++|++|++++|.+. .+| .+.. +++|++|++++|.+++. + ++.+++|++
T Consensus 29 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~-~l~~-l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~------------- 89 (457)
T 3bz5_A 29 EMQATDTISEEQLATLTSLDCHNSSIT-DMT-GIEK-LTGLTKLICTSNNITTL-D--LSQNTNLTY------------- 89 (457)
T ss_dssp TCCTTSEEEHHHHTTCCEEECCSSCCC-CCT-TGGG-CTTCSEEECCSSCCSCC-C--CTTCTTCSE-------------
T ss_pred CcCcccccChhHcCCCCEEEccCCCcc-cCh-hhcc-cCCCCEEEccCCcCCeE-c--cccCCCCCE-------------
Confidence 334455667888899999999998884 445 5555 89999999998888753 2 666666666
Q ss_pred cCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceeeeeccCCCCcCCCCEEEC
Q 036588 136 KRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDL 215 (541)
Q Consensus 136 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 215 (541)
|++++|.+.+. .+..+++|++|++++|.+.. ++ ++.+++|++|++++|.+++. .+..+++|+.|++
T Consensus 90 ------L~Ls~N~l~~~---~~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l 155 (457)
T 3bz5_A 90 ------LACDSNKLTNL---DVTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDC 155 (457)
T ss_dssp ------EECCSSCCSCC---CCTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEEC
T ss_pred ------EECcCCCCcee---ecCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee--ccccCCcCCEEEC
Confidence 55555555543 26778888888888888774 32 77778888888888877653 3667777777777
Q ss_pred CCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCC
Q 036588 216 SDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSG 295 (541)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 295 (541)
++|...+.. .+..+++|++|++++|.+.+ ++ +..+++|+.|++++|.+... .+..+++|+.|++++|.+..
T Consensus 156 ~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ 226 (457)
T 3bz5_A 156 HLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE 226 (457)
T ss_dssp TTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC
T ss_pred CCCCccccc--ccccCCcCCEEECCCCccce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc
Confidence 777433233 35556677777777766643 33 35566666666666665533 25555666666666665553
Q ss_pred CccccccccCCccEEEeeCCccccccccccccCCCcEEecc
Q 036588 296 AIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLS 336 (541)
Q Consensus 296 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 336 (541)
++ +..+++|+.|++++|.+.... ...+++|+.++++
T Consensus 227 -ip--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~ 262 (457)
T 3bz5_A 227 -ID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCI 262 (457)
T ss_dssp -CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECT
T ss_pred -cC--ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEecc
Confidence 22 445555666666555554321 3334444444443
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-31 Score=267.30 Aligned_cols=300 Identities=20% Similarity=0.178 Sum_probs=229.3
Q ss_pred CCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEee
Q 036588 21 YRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLF 100 (541)
Q Consensus 21 ~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 100 (541)
.++++|+++++.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+ +.+|...+.++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL-KLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-CSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC-CccCcccccCCCCCCEEE
Confidence 4788899999888877788888899999999988888866788888888899999988887 466666555588889999
Q ss_pred ccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCcc
Q 036588 101 LKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKE 180 (541)
Q Consensus 101 l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 180 (541)
+++|.+....+..+.++++|++ |++++|.+....+..|..+++|+.|++++|.+....+..
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~-------------------L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 171 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKS-------------------LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCE-------------------EEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred CCCCccccCChhHccccccCCE-------------------EECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence 8888888777778888888777 555556666666667888888888888888887655566
Q ss_pred ccccCCCcEEEccCceeeeeccC-CCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCC
Q 036588 181 ISNLTKLEKLDLQYNKLQGTIPY-AGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFL 259 (541)
Q Consensus 181 l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 259 (541)
+..+++|+.|+++++.+....+. +..+++|+.|+++++......+.......+|+.|++++|.+. .++...|..+++|
T Consensus 172 l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L 250 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYL 250 (477)
T ss_dssp HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTC
T ss_pred hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCcccc
Confidence 78888888888888887766553 777888888888887766556655555668888888888774 5666667788888
Q ss_pred cEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCcccccccc-ccccCCCcEEeccCc
Q 036588 260 EELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILY-VGHLLQLQWLDLSDN 338 (541)
Q Consensus 260 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~ 338 (541)
+.|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|+.|++++|.+...... +..+++|++|++++|
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence 8888888887777777777888888888888877766666777777777777777776644433 455666666666666
Q ss_pred ccc
Q 036588 339 QLS 341 (541)
Q Consensus 339 ~~~ 341 (541)
.+.
T Consensus 331 ~l~ 333 (477)
T 2id5_A 331 PLA 333 (477)
T ss_dssp CEE
T ss_pred Ccc
Confidence 543
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.7e-31 Score=258.22 Aligned_cols=308 Identities=19% Similarity=0.136 Sum_probs=175.8
Q ss_pred CCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEee
Q 036588 21 YRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLF 100 (541)
Q Consensus 21 ~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 100 (541)
.++++++++++.++...+..|..+++|++|+++++.+++..+..|.++++|++|++++|.+.+ ++...+.++++|++|+
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCc-CCHHHhcCCCCCCEEE
Confidence 344555555555543333334555555555555555543333445555555555555554422 2222222255555555
Q ss_pred ccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCcc
Q 036588 101 LKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKE 180 (541)
Q Consensus 101 l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 180 (541)
+++|.++...+..+.++++|++ |++++|.+....+..+..+++|+.|++++|.+... .
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~-------------------L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~ 181 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTT-------------------LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---D 181 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCE-------------------EECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---C
T ss_pred CCCCccCcCCHHHhcCCCCCcE-------------------EECCCCccCccChhhccCCCCCCEEECCCCcCCcc---c
Confidence 5555544332233344444444 55666666666566677777777777777776643 3
Q ss_pred ccccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCc
Q 036588 181 ISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLE 260 (541)
Q Consensus 181 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 260 (541)
+..+++|+.|+++++.+... ...++|+.|++++|.+... +. ...++|+.|++++|.+.+. ..+..+++|+
T Consensus 182 ~~~l~~L~~L~l~~n~l~~~----~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~---~~l~~l~~L~ 251 (390)
T 3o6n_A 182 LSLIPSLFHANVSYNLLSTL----AIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT---AWLLNYPGLV 251 (390)
T ss_dssp GGGCTTCSEEECCSSCCSEE----ECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC---GGGGGCTTCS
T ss_pred cccccccceeeccccccccc----CCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc---HHHcCCCCcc
Confidence 55667777777777765532 2345677777777766533 21 2246777777777766432 3356667777
Q ss_pred EEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCccc
Q 036588 261 ELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQL 340 (541)
Q Consensus 261 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 340 (541)
.|++++|.+.+..+..+..+++|++|++++|.+.. .+..+..+++|+.|++++|.+......+..+++|+.|++++|.+
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i 330 (390)
T 3o6n_A 252 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI 330 (390)
T ss_dssp EEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred EEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCcc
Confidence 77777777666666667777777777777776653 33344556677777777776665444455666666666666665
Q ss_pred cCCCCcccCCCCcceEEEcccCcCc
Q 036588 341 SGSLPSFKFNMPLLQFLDLSSNRLS 365 (541)
Q Consensus 341 ~~~~~~~~~~~~~L~~L~l~~~~~~ 365 (541)
... .+..+++|+.|++++|.+.
T Consensus 331 ~~~---~~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 331 VTL---KLSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp CCC---CCCTTCCCSEEECCSSCEE
T ss_pred cee---CchhhccCCEEEcCCCCcc
Confidence 532 1445566666666666554
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.98 E-value=1e-30 Score=261.40 Aligned_cols=319 Identities=22% Similarity=0.176 Sum_probs=241.6
Q ss_pred cEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCc
Q 036588 188 EKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNN 267 (541)
Q Consensus 188 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 267 (541)
+.++..+..++..+..+ .++++.|++++|.+....+..+..+++|++|++++|.+. .+....|..+++|+.|++++|
T Consensus 14 ~~v~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSSCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCcCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECCCC
Confidence 34555555555444433 467888999888888767777888888899988888775 344455688888888888888
Q ss_pred cccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccc-cccccCCCcEEeccCccccCCCCc
Q 036588 268 MFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTIL-YVGHLLQLQWLDLSDNQLSGSLPS 346 (541)
Q Consensus 268 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~ 346 (541)
.+....+..|..+++|++|++++|.+....+..+..+++|+.|++++|.+..... .+..+++|++|++++|.+......
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 8876666678888888888888888876667778888888888888888765544 377788888888888887765556
Q ss_pred ccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCC
Q 036588 347 FKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTK 426 (541)
Q Consensus 347 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 426 (541)
.+..+++|+.|++++|.+. .++...+..+++|+.|++++|...+..+.......+|++|++++|.+.......+..+++
T Consensus 171 ~l~~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 249 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY 249 (477)
T ss_dssp HHTTCTTCCEEEEESCCCC-EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred HhcccCCCcEEeCCCCcCc-EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc
Confidence 6777888888888888876 455556677888888888887766555555555568888888888887666667788888
Q ss_pred CcEEEccccccccccCC-CcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeec
Q 036588 427 LEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLS 505 (541)
Q Consensus 427 L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 505 (541)
|+.|++++|.+....+. +..+++|+.|++++|.+....+..+..+++|++|++++|.+. .++...+..+++|+.|+++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILD 328 (477)
T ss_dssp CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS-CCCGGGBSCGGGCCEEECC
T ss_pred cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc-eeCHhHcCCCcccCEEEcc
Confidence 88888888887755544 667788888888888887777777888888888888888774 4665677778888888888
Q ss_pred cceecc
Q 036588 506 NNMFYG 511 (541)
Q Consensus 506 ~~~~~~ 511 (541)
+|++..
T Consensus 329 ~N~l~c 334 (477)
T 2id5_A 329 SNPLAC 334 (477)
T ss_dssp SSCEEC
T ss_pred CCCccC
Confidence 888763
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.98 E-value=2.1e-30 Score=255.18 Aligned_cols=381 Identities=19% Similarity=0.168 Sum_probs=287.2
Q ss_pred CcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccccccCccC
Q 036588 31 LNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKI 110 (541)
Q Consensus 31 ~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 110 (541)
..+....+..++++++|++|+++++.+++ +| .+..+++|++|++++|.+.+ +| +.. +++|++|++++|.+++.
T Consensus 28 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~-l~~L~~L~Ls~N~l~~~- 100 (457)
T 3bz5_A 28 FEMQATDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQ-NTNLTYLACDSNKLTNL- 100 (457)
T ss_dssp TTCCTTSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTT-CTTCSEEECCSSCCSCC-
T ss_pred cCcCcccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--ccc-CCCCCEEECcCCCCcee-
Confidence 33443445568899999999999999984 56 79999999999999999844 44 444 99999999999998854
Q ss_pred CccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccccCCCcEE
Q 036588 111 PSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKL 190 (541)
Q Consensus 111 ~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L 190 (541)
+ ++++++|++ |++++|.+.+. + +..+++|+.|++++|.+... .++.+++|++|
T Consensus 101 ~--~~~l~~L~~-------------------L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L 153 (457)
T 3bz5_A 101 D--VTPLTKLTY-------------------LNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTEL 153 (457)
T ss_dssp C--CTTCTTCCE-------------------EECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEE
T ss_pred e--cCCCCcCCE-------------------EECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEE
Confidence 2 777777777 55555655553 2 78899999999999998853 38889999999
Q ss_pred EccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCcccc
Q 036588 191 DLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFY 270 (541)
Q Consensus 191 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 270 (541)
++++|...... .+..+++|+.|++++|.+.+ ++ +..+++|+.|++++|.+.+. + +..+++|+.|++++|.+.
T Consensus 154 ~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~-~---l~~l~~L~~L~Ls~N~l~ 225 (457)
T 3bz5_A 154 DCHLNKKITKL-DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL-D---LNQNIQLTFLDCSSNKLT 225 (457)
T ss_dssp ECTTCSCCCCC-CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC-C---CTTCTTCSEEECCSSCCS
T ss_pred ECCCCCccccc-ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee-c---cccCCCCCEEECcCCccc
Confidence 99999544333 57889999999999999885 33 77889999999999988643 2 578899999999999998
Q ss_pred ccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCC
Q 036588 271 GEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFN 350 (541)
Q Consensus 271 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 350 (541)
+ .| +..+++|+.|++++|.+.... +..+++|+.++++.+ +|+.+++++|.....++ +..
T Consensus 226 ~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n-------------~L~~L~l~~n~~~~~~~--~~~ 284 (457)
T 3bz5_A 226 E-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT-------------DLLEIDLTHNTQLIYFQ--AEG 284 (457)
T ss_dssp C-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC-------------CCSCCCCTTCTTCCEEE--CTT
T ss_pred c-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC-------------CCCEEECCCCccCCccc--ccc
Confidence 6 44 788999999999999988543 456888999988765 45666777776543332 356
Q ss_pred CCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEE
Q 036588 351 MPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKL 430 (541)
Q Consensus 351 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 430 (541)
+++|+.|++++|...+.++. ..++|+.+++ ..+++|++|++++|+++.. .+..+++|+.|
T Consensus 285 l~~L~~L~Ls~n~~l~~l~~----~~~~L~~L~l-------------~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L 344 (457)
T 3bz5_A 285 CRKIKELDVTHNTQLYLLDC----QAAGITELDL-------------SQNPKLVYLYLNNTELTEL---DVSHNTKLKSL 344 (457)
T ss_dssp CTTCCCCCCTTCTTCCEEEC----TTCCCSCCCC-------------TTCTTCCEEECTTCCCSCC---CCTTCTTCSEE
T ss_pred cccCCEEECCCCcccceecc----CCCcceEech-------------hhcccCCEEECCCCccccc---ccccCCcCcEE
Confidence 78888888888875544432 3344544433 3447889999999988764 37888899999
Q ss_pred EccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeecc
Q 036588 431 DLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSN 506 (541)
Q Consensus 431 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 506 (541)
++++|++.+ ++.|..|.+..+.+... +.+..|..+++++|.+.+.+|...+.....+.....+.
T Consensus 345 ~l~~N~l~~-------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~~~~~~~ 408 (457)
T 3bz5_A 345 SCVNAHIQD-------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGD 408 (457)
T ss_dssp ECCSSCCCB-------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBCTTSCCCEEEESS
T ss_pred ECCCCCCCC-------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhcccCceeeccCCC
Confidence 999888764 35666677777665422 34556778889999988888866655555555444443
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=2.7e-30 Score=247.28 Aligned_cols=307 Identities=24% Similarity=0.303 Sum_probs=184.2
Q ss_pred ccccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCc
Q 036588 181 ISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLE 260 (541)
Q Consensus 181 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 260 (541)
+..+++|++|++.++.+... +.+..+++|++|++++|.+.... . +..+++|++|++++|.+.. ++ .+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~-~~~~~~~~L~~L~l~~n~i~~~~-~-~~~l~~L~~L~L~~n~i~~-~~--~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASI-QGIEYLTNLEYLNLNGNQITDIS-P-LSNLVKLTNLYIGTNKITD-IS--ALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCC-CG--GGTTCTTCS
T ss_pred chhcccccEEEEeCCccccc-hhhhhcCCccEEEccCCccccch-h-hhcCCcCCEEEccCCcccC-ch--HHcCCCcCC
Confidence 34556666666666665533 33555666666666666554322 2 4555555555555555432 11 234445555
Q ss_pred EEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCccc
Q 036588 261 ELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQL 340 (541)
Q Consensus 261 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 340 (541)
+|++++|.+ ....+ +..+++|+.|++++|........+..+++|++|++++|.+
T Consensus 114 ~L~l~~n~i------------------------~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~ 167 (347)
T 4fmz_A 114 ELYLNEDNI------------------------SDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKV 167 (347)
T ss_dssp EEECTTSCC------------------------CCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCC
T ss_pred EEECcCCcc------------------------cCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCc
Confidence 555555444 32211 4444555555555543333333344555555555555544
Q ss_pred cCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchh
Q 036588 341 SGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKE 420 (541)
Q Consensus 341 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 420 (541)
..... +..+++|++|++++|.+. .++. +..+++|+.+++.+|.+.+..+ +..+++|++|++++|.+....+
T Consensus 168 ~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 168 KDVTP--IANLTDLYSLSLNYNQIE-DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp CCCGG--GGGCTTCSEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred CCchh--hccCCCCCEEEccCCccc-cccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--
Confidence 42221 445566666666666654 2222 4466777777777776653322 6667777777777777765433
Q ss_pred hhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccc
Q 036588 421 ISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLE 500 (541)
Q Consensus 421 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 500 (541)
+..+++|++|++++|.+... +.+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..+ ..+..+++|+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~ 314 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDM-EVIGGLTNLT 314 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGH-HHHHTCTTCS
T ss_pred hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcCh-hHhhccccCC
Confidence 66777777888877776643 4466777888888888877643 356778888888888888854333 6677788888
Q ss_pred eeeeccceecccCCCCCCCccccceEEeeccccc
Q 036588 501 ELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFS 534 (541)
Q Consensus 501 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 534 (541)
.|++++|++.+..| +..+++|+.|++++|++.
T Consensus 315 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 315 TLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 88888888886544 778888888888888875
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=2.5e-30 Score=264.88 Aligned_cols=309 Identities=19% Similarity=0.136 Sum_probs=202.5
Q ss_pred CCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEee
Q 036588 21 YRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLF 100 (541)
Q Consensus 21 ~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 100 (541)
.+++.++++++.++...+..|+.+++|++|++++|.+++..|..|.++++|++|++++|.+.+ ++...+.++++|++|+
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCCCEEE
Confidence 355666666666665444455666666666666666665555566666666666666666633 3333333366666666
Q ss_pred ccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCcc
Q 036588 101 LKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKE 180 (541)
Q Consensus 101 l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 180 (541)
+++|.++...+..|+++++|++ |++++|.+.+..+..+..+++|+.|++++|.+... .
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~-------------------L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~ 187 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTT-------------------LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---D 187 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCE-------------------EECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---C
T ss_pred eeCCCCCCCCHHHhccCCCCCE-------------------EEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---C
Confidence 6666666444444566666655 56666666666666778888888888888877643 3
Q ss_pred ccccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCc
Q 036588 181 ISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLE 260 (541)
Q Consensus 181 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 260 (541)
+..+++|+.|++++|.+... ...++|+.|++++|.+....+. ..++|+.|++++|.+.+. ..+..+++|+
T Consensus 188 ~~~l~~L~~L~l~~n~l~~l----~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~~---~~l~~l~~L~ 257 (597)
T 3oja_B 188 LSLIPSLFHANVSYNLLSTL----AIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT---AWLLNYPGLV 257 (597)
T ss_dssp GGGCTTCSEEECCSSCCSEE----ECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCCC---GGGGGCTTCS
T ss_pred hhhhhhhhhhhcccCccccc----cCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCCC---hhhccCCCCC
Confidence 55677888888887766543 3445788888888776533222 135788888888776532 3456777888
Q ss_pred EEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCccc
Q 036588 261 ELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQL 340 (541)
Q Consensus 261 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 340 (541)
.|++++|.+.+..+..+..+++|+.|++++|.+.. ++..+..+++|+.|++++|.+......+..+++|+.|++++|.+
T Consensus 258 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 258 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI 336 (597)
T ss_dssp EEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred EEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCC
Confidence 88888877777777777777888888888777763 34445567777777777777765555566677777777777776
Q ss_pred cCCCCcccCCCCcceEEEcccCcCcC
Q 036588 341 SGSLPSFKFNMPLLQFLDLSSNRLSV 366 (541)
Q Consensus 341 ~~~~~~~~~~~~~L~~L~l~~~~~~~ 366 (541)
... .+..+++|+.|++++|.+.+
T Consensus 337 ~~~---~~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 337 VTL---KLSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CCC---CCCTTCCCSEEECCSSCEEH
T ss_pred CCc---ChhhcCCCCEEEeeCCCCCC
Confidence 533 24456677777777776653
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=3.5e-29 Score=239.50 Aligned_cols=299 Identities=23% Similarity=0.279 Sum_probs=145.8
Q ss_pred ceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCC
Q 036588 139 WQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDN 218 (541)
Q Consensus 139 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 218 (541)
|+.|+++++.+... + .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+... +.+..+++|++|++++|
T Consensus 46 L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~-~~~~~l~~L~~L~l~~n 120 (347)
T 4fmz_A 46 ITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDI-SALQNLTNLRELYLNED 120 (347)
T ss_dssp CSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC-GGGTTCTTCSEEECTTS
T ss_pred ccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCc-hHHcCCCcCCEEECcCC
Confidence 33345545544432 2 355566666666666655532 22 55566666666666655432 33555556666666555
Q ss_pred cccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCcc
Q 036588 219 QLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIP 298 (541)
Q Consensus 219 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 298 (541)
.+... +. +..+++|++|++++|......+. +..+++|+.|++.++.+....+ +..+++|++|++++|.+....+
T Consensus 121 ~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~ 194 (347)
T 4fmz_A 121 NISDI-SP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP 194 (347)
T ss_dssp CCCCC-GG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG
T ss_pred cccCc-hh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc
Confidence 55422 11 44555555555555533222221 3455555555555554432221 4445555555555554442211
Q ss_pred ccccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCC
Q 036588 299 KEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPF 378 (541)
Q Consensus 299 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 378 (541)
+..+++|+.+++++|.+..... +.. +++|++|++++|.++ ..+. +..+++
T Consensus 195 --~~~l~~L~~L~l~~n~l~~~~~-~~~------------------------~~~L~~L~l~~n~l~-~~~~--~~~l~~ 244 (347)
T 4fmz_A 195 --LASLTSLHYFTAYVNQITDITP-VAN------------------------MTRLNSLKIGNNKIT-DLSP--LANLSQ 244 (347)
T ss_dssp --GGGCTTCCEEECCSSCCCCCGG-GGG------------------------CTTCCEEECCSSCCC-CCGG--GTTCTT
T ss_pred --ccCCCccceeecccCCCCCCch-hhc------------------------CCcCCEEEccCCccC-CCcc--hhcCCC
Confidence 4444555555555544432222 344 444444444444443 1211 334555
Q ss_pred ccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCC-CcccCCcceEeccC
Q 036588 379 LEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSD 457 (541)
Q Consensus 379 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~ 457 (541)
|++|++++|.+.+. ..+..+++|++|++++|.+... ..+..+++|+.|++++|++....+. +..+++|+.|++++
T Consensus 245 L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 320 (347)
T 4fmz_A 245 LTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ 320 (347)
T ss_dssp CCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCS
T ss_pred CCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccC
Confidence 55555555544321 2344555555555555555432 2345555555555555555433322 44455566666666
Q ss_pred CcCCCCCCccccCCCCccEeeCCCCcc
Q 036588 458 NQLSGSLPSFKFKMPLLQFLDLSSNRL 484 (541)
Q Consensus 458 ~~~~~~~~~~~~~~~~L~~L~l~~~~~ 484 (541)
|.+....+ +..+++|++|++++|++
T Consensus 321 n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 321 NHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp SSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred CccccccC--hhhhhccceeehhhhcc
Confidence 65554333 55566666666666665
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=1.2e-29 Score=246.52 Aligned_cols=308 Identities=23% Similarity=0.185 Sum_probs=194.7
Q ss_pred CCCCccEEEeccCcccccCCccccccCCCcEEEccCceeeeecc-CCCCcCCCCEEECCCCcccCCCCcccCCCCCccEE
Q 036588 159 NCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIP-YAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFL 237 (541)
Q Consensus 159 ~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 237 (541)
.+++++.+++.++.+....+..+..+++|++|+++++.+.+..+ .+..+++|++|++++|.+....+..+..+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 45889999999998885555557888999999999998887765 47889999999999999887777778889999999
Q ss_pred eccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCcc
Q 036588 238 DLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRL 317 (541)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 317 (541)
++++|.+. .++...|..+++|++|++++|.+....+..+..+++|++|++++|.+... .+..+++|+.+++++|.+
T Consensus 123 ~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 123 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred ECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 99999885 67777778889999999999888877777788888899999988887644 245677888888888765
Q ss_pred ccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCC
Q 036588 318 QGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDT 397 (541)
Q Consensus 318 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 397 (541)
... ...++|+.|++++|.+..... ...++|+.|++++|.+++ . ..+..+++|++|++++|.+.+..+..+
T Consensus 199 ~~~----~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~-~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (390)
T 3o6n_A 199 STL----AIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTD-T--AWLLNYPGLVEVDLSYNELEKIMYHPF 268 (390)
T ss_dssp SEE----ECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCC-C--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred ccc----CCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCcc-c--HHHcCCCCccEEECCCCcCCCcChhHc
Confidence 432 234566677776666553211 123455555555555542 1 223344555555555554443334444
Q ss_pred cCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEe
Q 036588 398 QNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFL 477 (541)
Q Consensus 398 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 477 (541)
..+++|++|++++|++.. .+..+..+++|+.|++++|++....+.+..+++|+.|++++|.+... + +..+++|++|
T Consensus 269 ~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L 344 (390)
T 3o6n_A 269 VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNL 344 (390)
T ss_dssp TTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEE
T ss_pred cccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCcccee-C--chhhccCCEE
Confidence 444444444444444442 22223334444444444444433222233344444444444444321 1 2334444444
Q ss_pred eCCCCcc
Q 036588 478 DLSSNRL 484 (541)
Q Consensus 478 ~l~~~~~ 484 (541)
++++|++
T Consensus 345 ~l~~N~~ 351 (390)
T 3o6n_A 345 TLSHNDW 351 (390)
T ss_dssp ECCSSCE
T ss_pred EcCCCCc
Confidence 4444444
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.2e-28 Score=252.50 Aligned_cols=309 Identities=23% Similarity=0.194 Sum_probs=213.4
Q ss_pred CCCCccEEEeccCcccccCCccccccCCCcEEEccCceeeeecc-CCCCcCCCCEEECCCCcccCCCCcccCCCCCccEE
Q 036588 159 NCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIP-YAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFL 237 (541)
Q Consensus 159 ~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 237 (541)
.+++++.+++.++.+....+..+..+++|++|++++|.+.+..+ .+..+++|++|++++|.+....+..+..+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 35788999999998886555667889999999999999887766 58889999999999999887777778889999999
Q ss_pred eccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCcc
Q 036588 238 DLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRL 317 (541)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 317 (541)
++++|.+. .++...|..+++|+.|++++|.+....+..+..+++|++|++++|.+... .+..+++|+.+++++|.+
T Consensus 129 ~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 129 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 204 (597)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcc
Confidence 99999885 67777778899999999999988888888888899999999999887754 245678888888888866
Q ss_pred ccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCC
Q 036588 318 QGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDT 397 (541)
Q Consensus 318 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 397 (541)
.. +...++|+.|++++|.+...... ..++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+..+
T Consensus 205 ~~----l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 205 ST----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp SE----EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred cc----ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccCCCCHHHh
Confidence 53 23445677777777766532221 124666666666666531 234455666666666666555555555
Q ss_pred cCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEe
Q 036588 398 QNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFL 477 (541)
Q Consensus 398 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 477 (541)
..+++|++|++++|.+.. .+..+..+++|+.|++++|.+....+.+..+++|+.|++++|.+... + +..+++|+.|
T Consensus 275 ~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L 350 (597)
T 3oja_B 275 VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNL 350 (597)
T ss_dssp TTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEE
T ss_pred cCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEE
Confidence 556666666666665553 23334445556666666655553333344555555555555555432 1 3445555555
Q ss_pred eCCCCccc
Q 036588 478 DLSSNRLS 485 (541)
Q Consensus 478 ~l~~~~~~ 485 (541)
++++|++.
T Consensus 351 ~l~~N~~~ 358 (597)
T 3oja_B 351 TLSHNDWD 358 (597)
T ss_dssp ECCSSCEE
T ss_pred EeeCCCCC
Confidence 55555553
No 42
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=3.1e-31 Score=264.29 Aligned_cols=377 Identities=19% Similarity=0.095 Sum_probs=212.0
Q ss_pred CCCeEEEEecCCcceeeeCCc-ccCCCCCcEecccccccCCc----cchhhhhcCCCcEEEeecCccCCCCChhhhhhcC
Q 036588 20 TYRVTALNISGLNLTVTIPSE-LGNLSSLQTLDLSFNWFSGS----IPASIFNMSSLLSINFINNALFGELPPNFCNHLS 94 (541)
Q Consensus 20 ~~~l~~L~l~~~~i~~~~~~~-~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 94 (541)
.+++++|+++++.++...... +..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..++..++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 357999999999998544433 78899999999999998743 4677888899999999999886555666666676
Q ss_pred ----CCcEeeccccccCc----cCCccCCCCCCCcEEecCCCcccc----------ccccCcceEEEecCccccccC---
Q 036588 95 ----NLESLFLKSNMFHG----KIPSTLSSCKRLRETSLSLNDFFW----------DHTKRNWQQLYLSKNMFYGEI--- 153 (541)
Q Consensus 95 ----~L~~L~l~~~~~~~----~~~~~~~~l~~L~~l~~~~~~~~~----------~~~~~~L~~L~l~~~~~~~~~--- 153 (541)
+|++|++++|.++. .++..+.++++|++|+++++.+.. ....++|++|++++|.+.+..
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 79999999999885 347788899999997777776531 111234555555555544321
Q ss_pred -CccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceeeeeccCC-CCcCCCCEEECCCCcccCC----CCcc
Q 036588 154 -PSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYA-GHLYQLQWLDLSDNQLSGS----LPSF 227 (541)
Q Consensus 154 -~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~----~~~~ 227 (541)
+..+..+++|++|++++|.+.+..+..+.. .+ ...++|+.|++++|.+... ++..
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~-------------------~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 222 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQ-------------------GLKDSPCQLEALKLESCGVTSDNCRDLCGI 222 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHH-------------------HHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHH-------------------HHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence 223334455555555555444322222221 00 1123444455544444321 2233
Q ss_pred cCCCCCccEEeccCCcccCcCC----hhhhccCCCCcEEEecCcccccc----CCCCCcCcccccEEEecccccCCCccc
Q 036588 228 KFKMPLLQFLDLSSNRLSAELP----TNVFHNLPFLEELYLSNNMFYGE----IPSDTANCSYLRILVLRFNNFSGAIPK 299 (541)
Q Consensus 228 ~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~ 299 (541)
+..+++|++|++++|.+.+... ...+..+++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+.
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 3344555555555554422111 11222345555555555554432 233344455566666655554432222
Q ss_pred cccc-----cCCccEEEeeCCcccccc-----ccccccCCCcEEeccCccccCCCCccc----C-CCCcceEEEcccCcC
Q 036588 300 EISN-----LTKLEKLDLQYNRLQGTI-----LYVGHLLQLQWLDLSDNQLSGSLPSFK----F-NMPLLQFLDLSSNRL 364 (541)
Q Consensus 300 ~l~~-----l~~L~~L~l~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~~~~~----~-~~~~L~~L~l~~~~~ 364 (541)
.+.. .++|+.|++++|.+.... ..+..+++|++|++++|.+.......+ . ..++|++|++++|.+
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence 2221 245666666666554321 123445666666666665543211111 1 256777777777776
Q ss_pred cCc---CChhhhcCCCCccEEEccCcccccCCCc----CC-cCCccCCeEEcccCCCCC
Q 036588 365 SVE---LPTNVFHNLPFLEELYLSNNMFYGEIPS----DT-QNCSYLRILVLKFNNFPG 415 (541)
Q Consensus 365 ~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~-~~~~~L~~L~l~~~~~~~ 415 (541)
++. .....+..+++|++|++++|++.+.... .+ .....|+.|.+.++....
T Consensus 383 ~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 383 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp CHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred ChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 531 1222344677888888888776532111 11 123467777777766554
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=4.6e-27 Score=222.86 Aligned_cols=289 Identities=22% Similarity=0.241 Sum_probs=179.9
Q ss_pred CCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEe
Q 036588 209 QLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVL 288 (541)
Q Consensus 209 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 288 (541)
+++.++++++.+. .+|..+ .++++.|+++++.+. .++...|..+++|++|++++|.+....+..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~--~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC--CTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC--CCCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 5666666666654 233322 245666666666553 333334455556666666655555444555555555555555
Q ss_pred cccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcC-c
Q 036588 289 RFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSV-E 367 (541)
Q Consensus 289 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~ 367 (541)
++|.+.. .+..+. ++|++|++++|.+....+..+..+++|+.|++++|.+.. .
T Consensus 108 s~n~l~~-l~~~~~-------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 161 (330)
T 1xku_A 108 SKNQLKE-LPEKMP-------------------------KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 161 (330)
T ss_dssp CSSCCSB-CCSSCC-------------------------TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG
T ss_pred CCCcCCc-cChhhc-------------------------ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccC
Confidence 5555442 222111 345555555554443434445556666666666665531 1
Q ss_pred CChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccC-CCcc
Q 036588 368 LPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIP-YAGH 446 (541)
Q Consensus 368 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~ 446 (541)
.....+..+++|+.|++.+|.+.. ++..+. ++|++|++++|.+....+..+..+++|+.|++++|.+....+ .+..
T Consensus 162 ~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 238 (330)
T 1xku_A 162 IENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238 (330)
T ss_dssp BCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred cChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence 333445567777777777777652 333222 678888888888777667778888888888888888776555 3667
Q ss_pred cCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccC------Ccccceeeeccceecc--cCCCCCC
Q 036588 447 LFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHN------LPFLEELYLSNNMFYG--EIPSDTP 518 (541)
Q Consensus 447 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~~--~~~~~~~ 518 (541)
+++|+.|++++|.+. .+|..+..+++|++|++++|++.+ ++...+.. .+.++.+++.+|++.. ..|..|.
T Consensus 239 l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~-~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~ 316 (330)
T 1xku_A 239 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA-IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316 (330)
T ss_dssp STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC-CCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc-cChhhcCCcccccccccccceEeecCcccccccCccccc
Confidence 788888888888877 666777888888888888888843 54444432 3678889999998863 5667888
Q ss_pred CccccceEEeeccc
Q 036588 519 NCSYLRILVVQFNN 532 (541)
Q Consensus 519 ~~~~L~~L~l~~~~ 532 (541)
.+++++.+++++|+
T Consensus 317 ~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 317 CVYVRAAVQLGNYK 330 (330)
T ss_dssp TCCCGGGEEC----
T ss_pred cccceeEEEecccC
Confidence 88999999998874
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=2.2e-27 Score=225.18 Aligned_cols=268 Identities=24% Similarity=0.213 Sum_probs=166.8
Q ss_pred CCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEecc
Q 036588 257 PFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLS 336 (541)
Q Consensus 257 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 336 (541)
++++.|+++++.+....+..|..+++|++|++++|.+....+..+..+++|++|++++|.+......+. ++|++|+++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECC
Confidence 344555555555444444455555555555555555554444455555555555555555543222222 566666666
Q ss_pred CccccCCCCcccCCCCcceEEEcccCcCcC-cCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCC
Q 036588 337 DNQLSGSLPSFKFNMPLLQFLDLSSNRLSV-ELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPG 415 (541)
Q Consensus 337 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 415 (541)
+|.+.......+..+++|+.|++++|.++. ......+..+ +|+.|++++|.+.+ ++..+. ++|++|++++|.+..
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~ 207 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQA 207 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCC
T ss_pred CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCc
Confidence 666654444556666667777776666541 1333344444 67777777777653 333222 677777777777776
Q ss_pred ccchhhhccCCCcEEEccccccccccCC-CcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCccccc
Q 036588 416 AIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFH 494 (541)
Q Consensus 416 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 494 (541)
..+..+..+++|+.|++++|.+....+. +..+++|+.|++++|.+. .+|..+..+++|++|++++|++.+ ++...+.
T Consensus 208 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~-~~~~~~~ 285 (332)
T 2ft3_A 208 IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK-VGVNDFC 285 (332)
T ss_dssp CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCB-CCTTSSS
T ss_pred cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCc-cChhHcc
Confidence 6666777777777777777777655543 666778888888888777 566667788888888888888743 4444444
Q ss_pred C------Ccccceeeeccceec--ccCCCCCCCccccceEEeeccc
Q 036588 495 N------LPFLEELYLSNNMFY--GEIPSDTPNCSYLRILVVQFNN 532 (541)
Q Consensus 495 ~------~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~ 532 (541)
. .++|+.+++.+|++. +..+..|..+++|+.+++++|.
T Consensus 286 ~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 3 366888888888877 5677778888889988888874
No 45
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=9.4e-30 Score=261.92 Aligned_cols=391 Identities=15% Similarity=0.081 Sum_probs=219.7
Q ss_pred CcceEEEecCccccccCCccccC-CCC-ccEEEeccCcc-cc-cCCccccccCCCcEEEccCceeeeec----c-CCCCc
Q 036588 137 RNWQQLYLSKNMFYGEIPSDIAN-CSY-LRILVLQFNNF-SG-AIPKEISNLTKLEKLDLQYNKLQGTI----P-YAGHL 207 (541)
Q Consensus 137 ~~L~~L~l~~~~~~~~~~~~~~~-~~~-L~~L~l~~~~i-~~-~~~~~l~~l~~L~~L~l~~~~~~~~~----~-~~~~~ 207 (541)
++|++|+++++.+.+.....+.. +++ |++|++.+|.. .. .++.....+++|++|++++|.+.+.. . ....+
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 191 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN 191 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHC
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcC
Confidence 34444555555444333333332 223 66666665541 11 11111234566666666666554321 1 12445
Q ss_pred CCCCEEECCCCcccC----CCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCcccc---ccCCCCCcCc
Q 036588 208 YQLQWLDLSDNQLSG----SLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFY---GEIPSDTANC 280 (541)
Q Consensus 208 ~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~ 280 (541)
++|++|+++++.+.. .++..+..+++|++|++++|.+.+ ++ ..+..+++|+.|.+...... ......+..+
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~ 269 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HH-HHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence 666666666665541 122233456677777777766532 22 44566677777777643211 1233445666
Q ss_pred ccccEEEecccccCCCccccccccCCccEEEeeCCcccccccc--ccccCCCcEEeccCccccCCCCcccCCCCcceEEE
Q 036588 281 SYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILY--VGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLD 358 (541)
Q Consensus 281 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 358 (541)
++|+.+.++++.. ...+..+..+++|++|++++|.+...... +..+++|++|++.++.....+......+++|++|+
T Consensus 270 ~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~ 348 (592)
T 3ogk_B 270 RKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLR 348 (592)
T ss_dssp TTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEE
T ss_pred ccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEE
Confidence 7777777766432 24455566677777777777764432221 46677777777774322222333334567788887
Q ss_pred ccc-----------CcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCc-CCccCCeEEcc----cCCCCCc-----c
Q 036588 359 LSS-----------NRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQ-NCSYLRILVLK----FNNFPGA-----I 417 (541)
Q Consensus 359 l~~-----------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~----~~~~~~~-----~ 417 (541)
+++ +.+++.........+++|++|++..+.+++.....+. .+++|++|+++ .+.+++. .
T Consensus 349 L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~ 428 (592)
T 3ogk_B 349 IERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGV 428 (592)
T ss_dssp EECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHH
T ss_pred eecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHH
Confidence 773 3343222333445678888888866665543333333 37788888885 3344432 2
Q ss_pred chhhhccCCCcEEEccccc--cccccC-C-CcccCCcceEeccCCcCCC-CCCccccCCCCccEeeCCCCccccccCccc
Q 036588 418 PKEISNLTKLEKLDLQYNR--LQGTIP-Y-AGHLFQLQWLDLSDNQLSG-SLPSFKFKMPLLQFLDLSSNRLSTELPTNV 492 (541)
Q Consensus 418 ~~~l~~~~~L~~L~l~~~~--~~~~~~-~-~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 492 (541)
+..+..+++|+.|+++.|. +.+... . ...+++|+.|++++|.+++ ..+..+..+++|++|++++|.+.+......
T Consensus 429 ~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 508 (592)
T 3ogk_B 429 RSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAA 508 (592)
T ss_dssp HHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHH
T ss_pred HHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHH
Confidence 3345668888888887654 222111 1 2346788888888887764 233445677888888888888643322234
Q ss_pred ccCCcccceeeeccceecccCCCCCC-CccccceEEeec
Q 036588 493 FHNLPFLEELYLSNNMFYGEIPSDTP-NCSYLRILVVQF 530 (541)
Q Consensus 493 ~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~ 530 (541)
...+++|+.|++++|++++.....++ .+|.+....+..
T Consensus 509 ~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 509 VTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp HHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred HHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence 45678888888888887766444443 456666655544
No 46
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.4e-27 Score=225.18 Aligned_cols=250 Identities=22% Similarity=0.282 Sum_probs=185.6
Q ss_pred CCCCCccccceeeeC--------CCCCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEE
Q 036588 3 NTSSSVCNWTGITCD--------VRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSI 74 (541)
Q Consensus 3 ~~~~~~~~~~~~~~~--------~~~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 74 (541)
+....+|.|.|+.|. ....++++|+++++.++ .+|..+.++++|++|++++|.++ .+|..+.++++|++|
T Consensus 55 ~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L 132 (328)
T 4fcg_A 55 SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETL 132 (328)
T ss_dssp TTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEE
T ss_pred cccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEE
Confidence 456789999999984 23578999999999999 67888999999999999999998 899999999999999
Q ss_pred EeecCccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCC
Q 036588 75 NFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIP 154 (541)
Q Consensus 75 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 154 (541)
++++|.+. .+|..+.. +++|++|++++|.+.+.+|..+... ...
T Consensus 133 ~Ls~n~l~-~lp~~l~~-l~~L~~L~L~~n~~~~~~p~~~~~~----------------------------------~~~ 176 (328)
T 4fcg_A 133 TLARNPLR-ALPASIAS-LNRLRELSIRACPELTELPEPLAST----------------------------------DAS 176 (328)
T ss_dssp EEESCCCC-CCCGGGGG-CTTCCEEEEEEETTCCCCCSCSEEE----------------------------------C-C
T ss_pred ECCCCccc-cCcHHHhc-CcCCCEEECCCCCCccccChhHhhc----------------------------------cch
Confidence 99999985 88888777 9999999999987776666655421 112
Q ss_pred ccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCc
Q 036588 155 SDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLL 234 (541)
Q Consensus 155 ~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 234 (541)
..+..+++|++|++++|.+. .+|..++.+++|++|++++|.+.+..+.+..+++|++|++++|.+.+..+..+..+++|
T Consensus 177 ~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 255 (328)
T 4fcg_A 177 GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255 (328)
T ss_dssp CCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCC
T ss_pred hhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCC
Confidence 23556677777777777766 56666777777777777777776655556667777777777777666666666667777
Q ss_pred cEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccc
Q 036588 235 QFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNN 292 (541)
Q Consensus 235 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 292 (541)
++|++++|.+.+.++.. +..+++|+.|++++|++.+..|..+..+++++.+.+..+.
T Consensus 256 ~~L~L~~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 256 KRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp CEEECTTCTTCCBCCTT-GGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred CEEECCCCCchhhcchh-hhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 77777776655555544 3566666666666666666666666666666666665443
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=3.4e-26 Score=216.89 Aligned_cols=290 Identities=21% Similarity=0.209 Sum_probs=197.7
Q ss_pred CCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEe
Q 036588 185 TKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYL 264 (541)
Q Consensus 185 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 264 (541)
.+++.++++++.+...+..+ .++++.|++++|.+....+..+..+++|++|++++|.+.+ +....|..+++|++|++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK-ISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC-BCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCccccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCe-eCHHHhcCCCCCCEEEC
Confidence 47899999998887655444 4789999999999987777788999999999999999864 44455689999999999
Q ss_pred cCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccc---cccccccCCCcEEeccCcccc
Q 036588 265 SNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGT---ILYVGHLLQLQWLDLSDNQLS 341 (541)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~ 341 (541)
++|.+. ..+..+. ++|++|++++|.+....+..+..+++|+.|++++|.+... ...+..+++|++|++++|.+.
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 999987 4444443 7899999999999877777788899999999999887531 122555566666666665554
Q ss_pred CCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhh
Q 036588 342 GSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEI 421 (541)
Q Consensus 342 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 421 (541)
. ++... .++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+
T Consensus 185 ~-------------------------l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 236 (330)
T 1xku_A 185 T-------------------------IPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236 (330)
T ss_dssp S-------------------------CCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG
T ss_pred c-------------------------CCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhc
Confidence 2 22221 1455555555555544444455556666666666666655555556
Q ss_pred hccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCcccc------CCCCccEeeCCCCcccc-ccCccccc
Q 036588 422 SNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKF------KMPLLQFLDLSSNRLST-ELPTNVFH 494 (541)
Q Consensus 422 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------~~~~L~~L~l~~~~~~~-~~~~~~~~ 494 (541)
..+++|++|++++|++......+..+++|+.|++++|.+....+..+. ..+.++.|++++|++.. .++...+.
T Consensus 237 ~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~ 316 (330)
T 1xku_A 237 ANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316 (330)
T ss_dssp GGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred cCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccc
Confidence 666666666666666654434455666666777776666654444443 23678888888887732 24445677
Q ss_pred CCcccceeeeccce
Q 036588 495 NLPFLEELYLSNNM 508 (541)
Q Consensus 495 ~~~~L~~L~l~~~~ 508 (541)
.+++++.+++++|+
T Consensus 317 ~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 317 CVYVRAAVQLGNYK 330 (330)
T ss_dssp TCCCGGGEEC----
T ss_pred cccceeEEEecccC
Confidence 78888888888764
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=8.7e-27 Score=221.02 Aligned_cols=265 Identities=21% Similarity=0.261 Sum_probs=157.4
Q ss_pred CeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeec
Q 036588 22 RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFL 101 (541)
Q Consensus 22 ~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 101 (541)
++++++++++.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+.+..|..+.. +++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSP-LRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTT-CTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhC-cCCCCEEEC
Confidence 3555555555555 3344332 45566666665555444445555555666666555553333333333 555555555
Q ss_pred cccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccc--cCCc
Q 036588 102 KSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSG--AIPK 179 (541)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~--~~~~ 179 (541)
++|.++ .+|..+. ++|++|++++|.+....+..+..+++|+.|++++|.+.. ..+.
T Consensus 110 ~~n~l~-~l~~~~~---------------------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 167 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP---------------------SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG 167 (332)
T ss_dssp CSSCCC-SCCSSCC---------------------TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTT
T ss_pred CCCcCC-ccCcccc---------------------ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcc
Confidence 555554 2222221 345556666777766656667788888888888887753 4555
Q ss_pred cccccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCC
Q 036588 180 EISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFL 259 (541)
Q Consensus 180 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 259 (541)
.+..+ +|++|++++|.+...+..+. ++|+.|++++|.+....+..+..+++|++|++++|.+. .++...+..+++|
T Consensus 168 ~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L 243 (332)
T 2ft3_A 168 AFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTL 243 (332)
T ss_dssp SSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC-CCCTTGGGGCTTC
T ss_pred cccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC-cCChhHhhCCCCC
Confidence 66666 78888888777765444332 67777777777777666566777777777777777764 3344445666777
Q ss_pred cEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccc------cCCccEEEeeCCcc
Q 036588 260 EELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISN------LTKLEKLDLQYNRL 317 (541)
Q Consensus 260 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~------l~~L~~L~l~~~~~ 317 (541)
+.|++++|.+. ..|..+..+++|+.|++++|.+....+..+.. .++|+.+++.+|.+
T Consensus 244 ~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 244 RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp CEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred CEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcc
Confidence 77777777665 55556666677777777776666444333322 23455555555543
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=2.1e-27 Score=222.59 Aligned_cols=248 Identities=30% Similarity=0.433 Sum_probs=190.8
Q ss_pred CCCcEecccccccCC--ccchhhhhcCCCcEEEeec-CccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCc
Q 036588 45 SSLQTLDLSFNWFSG--SIPASIFNMSSLLSINFIN-NALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLR 121 (541)
Q Consensus 45 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 121 (541)
.+++.|+++++.+++ .+|..+.++++|++|++++ |.+.+.+|..+.. +++|++|++++|.+.+..|..+.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhc-CCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 579999999999998 8999999999999999995 8887888988877 99999999999999888888888888888
Q ss_pred EEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccccC-CCcEEEccCceeeee
Q 036588 122 ETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLT-KLEKLDLQYNKLQGT 200 (541)
Q Consensus 122 ~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~-~L~~L~l~~~~~~~~ 200 (541)
+ |++++|.+.+..+..+..+++|++|++++|.+....|..++.++ .|++|++++|.+.+.
T Consensus 129 ~-------------------L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~ 189 (313)
T 1ogq_A 129 T-------------------LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189 (313)
T ss_dssp E-------------------EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE
T ss_pred E-------------------EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc
Confidence 8 56666777777888899999999999999999888888898887 899999999988855
Q ss_pred ccC-CCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcC
Q 036588 201 IPY-AGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTAN 279 (541)
Q Consensus 201 ~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 279 (541)
.+. +..++ |+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+.+..|..+..
T Consensus 190 ~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 266 (313)
T 1ogq_A 190 IPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQ 266 (313)
T ss_dssp CCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG--CCCCTTCCEEECCSSCCEECCCGGGGG
T ss_pred CChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc--ccccCCCCEEECcCCcccCcCChHHhc
Confidence 444 55565 88888888888777777777788888888888777543332 455566666666666666555666666
Q ss_pred cccccEEEecccccCCCccccccccCCccEEEeeCCc
Q 036588 280 CSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNR 316 (541)
Q Consensus 280 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 316 (541)
+++|++|++++|.+....|.. ..+++|+.+++.+|.
T Consensus 267 l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 267 LKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred CcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 666666666666555444432 445555555555554
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.2e-29 Score=261.19 Aligned_cols=448 Identities=15% Similarity=0.073 Sum_probs=220.4
Q ss_pred CCccccceeeeCCCCCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccC---Cccc------------hhhhhcCC
Q 036588 6 SSVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFS---GSIP------------ASIFNMSS 70 (541)
Q Consensus 6 ~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~------------~~~~~l~~ 70 (541)
..+++|.++.+..+ +.+.+.++ .....+..+..+++|++|+++++... +.+| .....+++
T Consensus 39 ~vck~W~~~~~~~~----~~l~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 113 (592)
T 3ogk_B 39 LVCRRWFKIDSETR----EHVTMALC-YTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQ 113 (592)
T ss_dssp TSCHHHHHHHHHHC----CEEEESCG-GGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTT
T ss_pred HHhHHHHHhhhccc----cEEEEeec-cccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCC
Confidence 34558887754321 23334333 22234455677888888888764321 1111 12236788
Q ss_pred CcEEEeecCccCCCCChhhhhhcCC-CcEeecccccc-Cc-cCCccCCCCCCCcEEecCCCccc---------cccccCc
Q 036588 71 LLSINFINNALFGELPPNFCNHLSN-LESLFLKSNMF-HG-KIPSTLSSCKRLRETSLSLNDFF---------WDHTKRN 138 (541)
Q Consensus 71 L~~L~l~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~-~~-~~~~~~~~l~~L~~l~~~~~~~~---------~~~~~~~ 138 (541)
|++|++++|.+.+..+..+...+++ |++|++++|.. .. .++.....+++|++|+++++.+. ....+++
T Consensus 114 L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~ 193 (592)
T 3ogk_B 114 LKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTS 193 (592)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCC
T ss_pred CCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCC
Confidence 8888888887655455555553455 88888877752 11 12223346777777766666432 1123355
Q ss_pred ceEEEecCcccc----ccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceee----eeccCCCCcCCC
Q 036588 139 WQQLYLSKNMFY----GEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQ----GTIPYAGHLYQL 210 (541)
Q Consensus 139 L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~----~~~~~~~~~~~L 210 (541)
|+.|+++++.+. ..++..+..+++|+.|++.+|.+. .++..+..+++|++|+++..... .....+..+++|
T Consensus 194 L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L 272 (592)
T 3ogk_B 194 LEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKL 272 (592)
T ss_dssp CCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTC
T ss_pred ccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccc
Confidence 555666555554 122233445566666666666554 24455555666666666542111 011223444555
Q ss_pred CEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecc
Q 036588 211 QWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRF 290 (541)
Q Consensus 211 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 290 (541)
+.+.+.+... ..++..+..+++|++|++++|.+........+..+++|+.|++.++......+.....+++|++|++++
T Consensus 273 ~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~ 351 (592)
T 3ogk_B 273 CRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIER 351 (592)
T ss_dssp CEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred cccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeec
Confidence 5555544321 133344444555555555555432222222334455555555542211111111122344444444442
Q ss_pred -----------cccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccC-CCCcceEEE
Q 036588 291 -----------NNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKF-NMPLLQFLD 358 (541)
Q Consensus 291 -----------~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~ 358 (541)
+.++...... ....+++|++|++..+.+.......+. .+++|+.|+
T Consensus 352 g~~~~~~~~~~~~~~~~~~~~----------------------l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~ 409 (592)
T 3ogk_B 352 GADEQGMEDEEGLVSQRGLIA----------------------LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFR 409 (592)
T ss_dssp CCCSSTTSSTTCCCCHHHHHH----------------------HHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEE
T ss_pred CccccccccccCccCHHHHHH----------------------HHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEE
Confidence 1121111111 022344555555433333321111111 245555555
Q ss_pred cc----cCcCcCc----CChhhhcCCCCccEEEccCcc--cccCCCcCC-cCCccCCeEEcccCCCCCc-cchhhhccCC
Q 036588 359 LS----SNRLSVE----LPTNVFHNLPFLEELYLSNNM--FYGEIPSDT-QNCSYLRILVLKFNNFPGA-IPKEISNLTK 426 (541)
Q Consensus 359 l~----~~~~~~~----~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~-~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~ 426 (541)
++ .+.+++. .....+..+++|+.|++..|. +++.....+ ..+++|++|++++|++++. .+..+..+++
T Consensus 410 l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 489 (592)
T 3ogk_B 410 LVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPN 489 (592)
T ss_dssp EEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTT
T ss_pred EeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcc
Confidence 54 2233321 011234456777777775443 222111122 3467777777777776642 2334456777
Q ss_pred CcEEEcccccccccc-C-CCcccCCcceEeccCCcCCCCCCccc-cCCCCccEeeCCCC
Q 036588 427 LEKLDLQYNRLQGTI-P-YAGHLFQLQWLDLSDNQLSGSLPSFK-FKMPLLQFLDLSSN 482 (541)
Q Consensus 427 L~~L~l~~~~~~~~~-~-~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~ 482 (541)
|+.|++++|.+.... + ....+++|+.|++++|.+++.....+ ..+|.+....+...
T Consensus 490 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 490 LQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred cCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 888888887754321 1 13456778888888887765433333 35677766666554
No 51
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=1.2e-30 Score=260.17 Aligned_cols=374 Identities=22% Similarity=0.132 Sum_probs=232.6
Q ss_pred CcceEEEecCccccccCCc-cccCCCCccEEEeccCcccc----cCCccccccCCCcEEEccCceeeeecc-C-CCCcC-
Q 036588 137 RNWQQLYLSKNMFYGEIPS-DIANCSYLRILVLQFNNFSG----AIPKEISNLTKLEKLDLQYNKLQGTIP-Y-AGHLY- 208 (541)
Q Consensus 137 ~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~i~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~-~-~~~~~- 208 (541)
++|++|+++++.+.+.... .+..+++|++|++++|.+.+ .++..+..+++|++|++++|.+.+... . ...++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4677788888877654333 26778888888888888764 234556677888888888887764222 1 22233
Q ss_pred ---CCCEEECCCCcccC----CCCcccCCCCCccEEeccCCcccCcCChhh----hccCCCCcEEEecCccccccC----
Q 036588 209 ---QLQWLDLSDNQLSG----SLPSFKFKMPLLQFLDLSSNRLSAELPTNV----FHNLPFLEELYLSNNMFYGEI---- 273 (541)
Q Consensus 209 ---~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~---- 273 (541)
+|++|++++|.+.. .++..+..+++|++|++++|.+.+..+..+ +...++|++|++++|.++...
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 68888888887763 335667778888888888887643322222 223457888888888776432
Q ss_pred CCCCcCcccccEEEecccccCCCcccccc-----ccCCccEEEeeCCccccc-----cccccccCCCcEEeccCccccCC
Q 036588 274 PSDTANCSYLRILVLRFNNFSGAIPKEIS-----NLTKLEKLDLQYNRLQGT-----ILYVGHLLQLQWLDLSDNQLSGS 343 (541)
Q Consensus 274 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~ 343 (541)
+..+..+++|++|++++|.+.......+. ..++|++|++++|.+... ...+..+++|++|++++|.+...
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 34455567888888888776544333332 255788888888876642 22355677888888887766532
Q ss_pred C-----CcccCCCCcceEEEcccCcCcCcC---ChhhhcCCCCccEEEccCcccccCCCcCC-----cCCccCCeEEccc
Q 036588 344 L-----PSFKFNMPLLQFLDLSSNRLSVEL---PTNVFHNLPFLEELYLSNNMFYGEIPSDT-----QNCSYLRILVLKF 410 (541)
Q Consensus 344 ~-----~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~ 410 (541)
. +..+..+++|++|++++|.++... ....+..+++|++|++++|.+.+.....+ ...++|++|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 1 222335677888888887775321 12234457778888888777653222111 2235788888888
Q ss_pred CCCCCc----cchhhhccCCCcEEEccccccccccCC-C-----cccCCcceEeccCCcCCC----CCCccccCCCCccE
Q 036588 411 NNFPGA----IPKEISNLTKLEKLDLQYNRLQGTIPY-A-----GHLFQLQWLDLSDNQLSG----SLPSFKFKMPLLQF 476 (541)
Q Consensus 411 ~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~-~-----~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~ 476 (541)
|.++.. .+..+..+++|++|++++|.+.+..+. + ...++|+.|++++|.+.+ .++..+..+++|++
T Consensus 323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~ 402 (461)
T 1z7x_W 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 402 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred CCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccE
Confidence 877654 344555677888888888776543221 1 125677777777777664 44555666777777
Q ss_pred eeCCCCccccccCcc---cc-cCCcccceeeeccceec
Q 036588 477 LDLSSNRLSTELPTN---VF-HNLPFLEELYLSNNMFY 510 (541)
Q Consensus 477 L~l~~~~~~~~~~~~---~~-~~~~~L~~L~l~~~~~~ 510 (541)
|++++|++.+.-... .+ .....|+.|++.++.+.
T Consensus 403 L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 403 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp EECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred EECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 777777764321101 11 12234666666655544
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=7.9e-26 Score=216.39 Aligned_cols=223 Identities=22% Similarity=0.235 Sum_probs=140.4
Q ss_pred CCCCCCccccceeeeCCC-----------CCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCC
Q 036588 2 WNTSSSVCNWTGITCDVR-----------TYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSS 70 (541)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~-----------~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 70 (541)
|..+...|.|.++ |+.+ .+++++|+++++++++..++.|+++++|++|++++|.+++..+..|.++++
T Consensus 23 ~~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (353)
T 2z80_A 23 SNQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101 (353)
T ss_dssp ----CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCC
Confidence 5566778888776 5422 237888888888888666667888888888888888887666677888888
Q ss_pred CcEEEeecCccCCCCChhhhhhcCCCcEeeccccccCccCC-ccCCCCCCCcEEecCCCccccccccCcceEEEecCccc
Q 036588 71 LLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIP-STLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMF 149 (541)
Q Consensus 71 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~ 149 (541)
|++|++++|.+ +.++...+.++++|++|++++|+++...+ ..+.++++|++++++++. .+
T Consensus 102 L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~------------------~~ 162 (353)
T 2z80_A 102 LEHLDLSYNYL-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD------------------TF 162 (353)
T ss_dssp CCEEECCSSCC-SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS------------------SC
T ss_pred CCEEECCCCcC-CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCc------------------cc
Confidence 88888888877 45666655558888888888887774333 366777777774444331 23
Q ss_pred cccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceeeeeccC-CCCcCCCCEEECCCCcccCCCCccc
Q 036588 150 YGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPY-AGHLYQLQWLDLSDNQLSGSLPSFK 228 (541)
Q Consensus 150 ~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~ 228 (541)
....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+...... +..+++|+.|++++|.+....+..+
T Consensus 163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 242 (353)
T 2z80_A 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL 242 (353)
T ss_dssp CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--
T ss_pred cccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccc
Confidence 444455566667777777777766666666666667777777766665433332 2345666666666666554322211
Q ss_pred ---CCCCCccEEeccCCcc
Q 036588 229 ---FKMPLLQFLDLSSNRL 244 (541)
Q Consensus 229 ---~~~~~L~~L~l~~~~~ 244 (541)
...+.++.++++++.+
T Consensus 243 ~~~~~~~~l~~l~L~~~~l 261 (353)
T 2z80_A 243 STGETNSLIKKFTFRNVKI 261 (353)
T ss_dssp ----CCCCCCEEEEESCBC
T ss_pred ccccccchhhccccccccc
Confidence 1234444555544443
No 53
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=8.7e-29 Score=254.92 Aligned_cols=395 Identities=17% Similarity=0.121 Sum_probs=242.4
Q ss_pred ccCcceEEEecCccccccCCcccc-CCCCccEEEeccC-ccccc-CCccccccCCCcEEEccCceeeeecc-----CCCC
Q 036588 135 TKRNWQQLYLSKNMFYGEIPSDIA-NCSYLRILVLQFN-NFSGA-IPKEISNLTKLEKLDLQYNKLQGTIP-----YAGH 206 (541)
Q Consensus 135 ~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~-~i~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~-----~~~~ 206 (541)
.+++|++|+++++.+.+..+..+. .+++|++|++.+| .+.+. ++..+..+++|++|++++|.+.+... ....
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 345666677777776655444454 6889999999988 44432 33334478899999999988765322 2346
Q ss_pred cCCCCEEECCCCc--ccC-CCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCcc-------ccccCCCC
Q 036588 207 LYQLQWLDLSDNQ--LSG-SLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNM-------FYGEIPSD 276 (541)
Q Consensus 207 ~~~L~~L~l~~~~--~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~~ 276 (541)
+++|+.|+++++. +.. .+......+++|++|++++|..... ....+..+++|+.|.+..+. +. ..+..
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~ 260 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVA 260 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHH-HHHHH
Confidence 7789999998876 110 1112233468899999988832222 33455778889998865442 22 12235
Q ss_pred CcCcccccEE-EecccccCCCccccccccCCccEEEeeCCcccccccc--ccccCCCcEEeccCccccCCCCcccCCCCc
Q 036588 277 TANCSYLRIL-VLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILY--VGHLLQLQWLDLSDNQLSGSLPSFKFNMPL 353 (541)
Q Consensus 277 ~~~~~~L~~L-~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 353 (541)
+.++++|+.+ .+.+... ...+..+..+++|++|++++|.+...... +..+++|++|++.+|.....+......+++
T Consensus 261 l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKD 339 (594)
T ss_dssp HHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTT
T ss_pred HhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCC
Confidence 6677888888 3333221 23344445678899999988885432222 557788888888887222222223335788
Q ss_pred ceEEEccc---------CcCcCcCChhhhcCCCCccEEEccCcccccCCCcCC-cCCccCCeEEcc--c----CCCCC--
Q 036588 354 LQFLDLSS---------NRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDT-QNCSYLRILVLK--F----NNFPG-- 415 (541)
Q Consensus 354 L~~L~l~~---------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~--~----~~~~~-- 415 (541)
|++|++.+ +.+++.........+++|+.|.+..+.+++.....+ ..+++|++|+++ + +.++.
T Consensus 340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~ 419 (594)
T 2p1m_B 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP 419 (594)
T ss_dssp CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence 88888843 233322223334457888888777666653332233 257888888888 3 33432
Q ss_pred ---ccchhhhccCCCcEEEccccccccccC-CCc-ccCCcceEeccCCcCCCCCCccc-cCCCCccEeeCCCCccccccC
Q 036588 416 ---AIPKEISNLTKLEKLDLQYNRLQGTIP-YAG-HLFQLQWLDLSDNQLSGSLPSFK-FKMPLLQFLDLSSNRLSTELP 489 (541)
Q Consensus 416 ---~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~ 489 (541)
..+..+..+++|+.|++++ .+.+... .+. .+++|+.|++++|.+++.....+ ..+++|++|++++|.+.+...
T Consensus 420 ~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~ 498 (594)
T 2p1m_B 420 LDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKAL 498 (594)
T ss_dssp THHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHH
T ss_pred hhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHH
Confidence 1122356678888888876 3332211 122 37788888888887765333333 567888888888888743332
Q ss_pred cccccCCcccceeeeccceecccCCCCC-CCccccceEEeecccc
Q 036588 490 TNVFHNLPFLEELYLSNNMFYGEIPSDT-PNCSYLRILVVQFNNF 533 (541)
Q Consensus 490 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~ 533 (541)
......+++|+.|++++|+++......+ ..+|.|+...+..+.-
T Consensus 499 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 499 LANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA 543 (594)
T ss_dssp HHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred HHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence 2344567888888888888764433344 4567777666665543
No 54
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=1.8e-28 Score=252.61 Aligned_cols=396 Identities=14% Similarity=0.065 Sum_probs=189.4
Q ss_pred CCCCCcEecccccccCCccchhhh-hcCCCcEEEeecC-ccCCCCChhhhhhcCCCcEeeccccccCccCCcc----CCC
Q 036588 43 NLSSLQTLDLSFNWFSGSIPASIF-NMSSLLSINFINN-ALFGELPPNFCNHLSNLESLFLKSNMFHGKIPST----LSS 116 (541)
Q Consensus 43 ~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~ 116 (541)
.+++|++|+++++.+++..+..+. .+++|++|++.+| .+.......+..++++|++|++++|.+++..+.. ...
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 455566666665555544444443 4556666666555 2211112233333566666666555544332222 224
Q ss_pred CCCCcEEecCCCccccccccCcceEEEecCccccc-cCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCc
Q 036588 117 CKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYG-EIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYN 195 (541)
Q Consensus 117 l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~ 195 (541)
+++|++|+++++.. .+.. .+...+..+++|++|++.+|.....++..+..+++|++|.+..+
T Consensus 183 ~~~L~~L~l~~~~~-----------------~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 183 YTSLVSLNISCLAS-----------------EVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp CCCCCEEECTTCCS-----------------CCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred CCcCcEEEecccCC-----------------cCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 44555544444430 0110 01111233456666666555222223444555556666654333
Q ss_pred e-------eeeeccCCCCcCCCCEE-ECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCc
Q 036588 196 K-------LQGTIPYAGHLYQLQWL-DLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNN 267 (541)
Q Consensus 196 ~-------~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 267 (541)
. +.+....+..+++|+.+ .+.+... ..++..+..+++|++|++++|.+.+.....++..+++|++|++.++
T Consensus 246 ~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 246 TAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp CCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred cCccchhhHHHHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 1 12222234455556555 2222111 1222223345666666666665433222333445666666666655
Q ss_pred ccccc-CCCCCcCcccccEEEecc---------cccCCCccccc-cccCCccEEEeeCCcccccccc-c-cccCCCcEEe
Q 036588 268 MFYGE-IPSDTANCSYLRILVLRF---------NNFSGAIPKEI-SNLTKLEKLDLQYNRLQGTILY-V-GHLLQLQWLD 334 (541)
Q Consensus 268 ~~~~~-~~~~~~~~~~L~~L~l~~---------~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~-~-~~~~~L~~L~ 334 (541)
+... .+.....+++|++|++.+ +.++......+ ..+++|+.|.+..+.+...... + ..+++|+.|+
T Consensus 325 -~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~ 403 (594)
T 2p1m_B 325 -IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFR 403 (594)
T ss_dssp -GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEE
T ss_pred -cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeE
Confidence 2211 111122356666666633 12221111122 2366677776665555432222 2 2466777777
Q ss_pred cc--C----ccccC-----CCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCC-cCCcc
Q 036588 335 LS--D----NQLSG-----SLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDT-QNCSY 402 (541)
Q Consensus 335 l~--~----~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~ 402 (541)
++ + +.++. .+...+..+++|+.|++++ .+++.........+++|+.|++++|.+++.....+ ..+++
T Consensus 404 L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 482 (594)
T 2p1m_B 404 LCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDS 482 (594)
T ss_dssp EEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTT
T ss_pred eecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCC
Confidence 76 2 22221 0111244567777777766 44433333344347777888887777643322223 45777
Q ss_pred CCeEEcccCCCCCccch-hhhccCCCcEEEccccccccccCC--CcccCCcceEeccCC
Q 036588 403 LRILVLKFNNFPGAIPK-EISNLTKLEKLDLQYNRLQGTIPY--AGHLFQLQWLDLSDN 458 (541)
Q Consensus 403 L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~ 458 (541)
|++|++++|.+++.... ....+++|+.|++++|++...... ...+++|+...+..+
T Consensus 483 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 483 LRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp CCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred cCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 88888887777543333 334577788888888776322111 134566665555544
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=2.1e-25 Score=209.03 Aligned_cols=241 Identities=24% Similarity=0.246 Sum_probs=157.1
Q ss_pred ccccceeeeCCC---------CCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCc--cchhhhhcCCCcEEEe
Q 036588 8 VCNWTGITCDVR---------TYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGS--IPASIFNMSSLLSINF 76 (541)
Q Consensus 8 ~~~~~~~~~~~~---------~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l 76 (541)
.|.|.++.|... .+++++|+++++.++...+..|+++++|++|++++|.++.. .+..+..+++|++|++
T Consensus 6 ~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred eeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 478888888542 24788888888888865556678888888888888887622 3677777888888888
Q ss_pred ecCccCCCCChhhhhhcCCCcEeeccccccCccCC-ccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCc
Q 036588 77 INNALFGELPPNFCNHLSNLESLFLKSNMFHGKIP-STLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPS 155 (541)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 155 (541)
++|.+. .+|..+.. +++|++|+++++.++...+ ..+..+++|+++++++ |.+....+.
T Consensus 86 s~n~i~-~l~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-------------------n~l~~~~~~ 144 (306)
T 2z66_A 86 SFNGVI-TMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH-------------------THTRVAFNG 144 (306)
T ss_dssp CSCSEE-EEEEEEET-CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTT-------------------SCCEECSTT
T ss_pred CCCccc-cChhhcCC-CCCCCEEECCCCcccccccchhhhhccCCCEEECCC-------------------CcCCccchh
Confidence 888773 56666555 8888888888888875544 4677777777755554 444444555
Q ss_pred cccCCCCccEEEeccCcccc-cCCccccccCCCcEEEccCceeeeecc-CCCCcCCCCEEECCCCcccCCCCcccCCCCC
Q 036588 156 DIANCSYLRILVLQFNNFSG-AIPKEISNLTKLEKLDLQYNKLQGTIP-YAGHLYQLQWLDLSDNQLSGSLPSFKFKMPL 233 (541)
Q Consensus 156 ~~~~~~~L~~L~l~~~~i~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 233 (541)
.+..+++|++|++++|.+.+ ..+..+..+++|++|++++|.+.+..+ .+..+++|+.|++++|.+....+..+..+++
T Consensus 145 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 224 (306)
T 2z66_A 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 224 (306)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTT
T ss_pred hcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCccc
Confidence 55666666666666666553 345556666666666666666655433 3555666666666666665544445555666
Q ss_pred ccEEeccCCcccCcCChhhhccC-CCCcEEEecCcccc
Q 036588 234 LQFLDLSSNRLSAELPTNVFHNL-PFLEELYLSNNMFY 270 (541)
Q Consensus 234 L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~ 270 (541)
|++|++++|.+.+..+.. +..+ ++|+.|++++|.+.
T Consensus 225 L~~L~L~~N~l~~~~~~~-~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 225 LQVLDYSLNHIMTSKKQE-LQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCEEECTTSCCCBCSSSS-CCCCCTTCCEEECTTCCEE
T ss_pred CCEeECCCCCCcccCHHH-HHhhhccCCEEEccCCCee
Confidence 666666666654333322 2444 36666666666554
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=1e-25 Score=215.56 Aligned_cols=252 Identities=23% Similarity=0.257 Sum_probs=131.9
Q ss_pred CCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCcccccccc-ccccCCCcEEecc
Q 036588 258 FLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILY-VGHLLQLQWLDLS 336 (541)
Q Consensus 258 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~ 336 (541)
+|++|+++++.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+...... +..+++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 344444444444433333444444444444444444433333344444444444444444433222 3444555555555
Q ss_pred CccccCCCC-cccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCC
Q 036588 337 DNQLSGSLP-SFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPG 415 (541)
Q Consensus 337 ~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 415 (541)
+|.+..... ..+..+++|++|++++|.....++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence 554443222 3455566666666666632224444455566777777777776665556666777777777777777654
Q ss_pred ccchhhhccCCCcEEEccccccccccCC----CcccCCcceEeccCCcCCC----CCCccccCCCCccEeeCCCCccccc
Q 036588 416 AIPKEISNLTKLEKLDLQYNRLQGTIPY----AGHLFQLQWLDLSDNQLSG----SLPSFKFKMPLLQFLDLSSNRLSTE 487 (541)
Q Consensus 416 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~ 487 (541)
.....+..+++|+.|++++|.+.+.... ....+.++.+++.++.+.+ .++..+..+++|++|++++|.+. .
T Consensus 213 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~ 291 (353)
T 2z80_A 213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-S 291 (353)
T ss_dssp HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-C
T ss_pred chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-c
Confidence 4444445567777777777766543221 1223445555555554433 23334455566666666666553 3
Q ss_pred cCcccccCCcccceeeeccceec
Q 036588 488 LPTNVFHNLPFLEELYLSNNMFY 510 (541)
Q Consensus 488 ~~~~~~~~~~~L~~L~l~~~~~~ 510 (541)
++...+..+++|+.|++++|++.
T Consensus 292 i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 292 VPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCHHHHhcCCCCCEEEeeCCCcc
Confidence 55444455566666666666555
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.92 E-value=1.9e-24 Score=202.64 Aligned_cols=264 Identities=23% Similarity=0.211 Sum_probs=186.4
Q ss_pred CCCcEEEecCccccccCCCCCcCcccccEEEecccccCCC--ccccccccCCccEEEeeCCccccccccccccCCCcEEe
Q 036588 257 PFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGA--IPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLD 334 (541)
Q Consensus 257 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 334 (541)
+++++|+++++.+....+..|..+++|++|++++|.+... .+..+..+++|+.|++++|.+......+..+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 3555555555555543344455666666666666655422 13344556777777777777665555567777788888
Q ss_pred ccCccccCCCC-cccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCccccc-CCCcCCcCCccCCeEEcccCC
Q 036588 335 LSDNQLSGSLP-SFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYG-EIPSDTQNCSYLRILVLKFNN 412 (541)
Q Consensus 335 l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~ 412 (541)
+++|.+..... ..+..+++|+.|++++|.+. ......+..+++|++|++.+|.+.+ ..+..+..+++|++|++++|.
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCE-ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCC-ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 88777765443 46677888888888888876 4445556678889999998888865 466778888999999999998
Q ss_pred CCCccchhhhccCCCcEEEccccccccccCC-CcccCCcceEeccCCcCCCCCCccccCCC-CccEeeCCCCccccccCc
Q 036588 413 FPGAIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSGSLPSFKFKMP-LLQFLDLSSNRLSTELPT 490 (541)
Q Consensus 413 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~ 490 (541)
+....+..+..+++|+.|++++|.+....+. +..+++|+.|++++|.+....+..+..++ +|++|++++|++......
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 8877788888899999999999988765553 67788999999999988877777888875 899999999988654322
Q ss_pred ccc-cCCcccceeeeccceecccCCCCCCCcc
Q 036588 491 NVF-HNLPFLEELYLSNNMFYGEIPSDTPNCS 521 (541)
Q Consensus 491 ~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 521 (541)
..+ .-+...+.+.+..+.+....|+.++..+
T Consensus 267 ~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~ 298 (306)
T 2z66_A 267 QSFLQWIKDQRQLLVEVERMECATPSDKQGMP 298 (306)
T ss_dssp HHHHHHHHHTGGGBSCGGGCBEEESGGGTTCB
T ss_pred HHHHHHHHhhhhhhccccccccCCchhhCCce
Confidence 111 2233455566666667766777666543
No 58
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=5.1e-24 Score=200.74 Aligned_cols=234 Identities=23% Similarity=0.226 Sum_probs=154.5
Q ss_pred ccccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcc
Q 036588 281 SYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLS 360 (541)
Q Consensus 281 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 360 (541)
++++.|+++++.+. .++..+..+++|++|++++|.+......+..+++|++|++++|.+. .++..+..+++|+.|+++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 45566666666555 3444455556666666666555533333455555555555555444 333344444444444444
Q ss_pred cCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccc
Q 036588 361 SNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGT 440 (541)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 440 (541)
+|...+.++..... . .....+..+++|++|++++|.+. ..+..+..+++|+.|++++|.+.+.
T Consensus 159 ~n~~~~~~p~~~~~-------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l 221 (328)
T 4fcg_A 159 ACPELTELPEPLAS-------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL 221 (328)
T ss_dssp EETTCCCCCSCSEE-------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCC
T ss_pred CCCCccccChhHhh-------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcC
Confidence 44333222222110 0 01112344788888888888877 5566788888888888888888766
Q ss_pred cCCCcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCc
Q 036588 441 IPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNC 520 (541)
Q Consensus 441 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 520 (541)
.+.+..+++|+.|++++|.+...++..+..+++|++|++++|.+.+.++ ..+..+++|+.|++++|++.+.+|+.+..+
T Consensus 222 ~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L 300 (328)
T 4fcg_A 222 GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP-LDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300 (328)
T ss_dssp CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC-TTGGGCTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc-hhhhcCCCCCEEeCCCCCchhhccHHHhhc
Confidence 5567778888888888888877788888888888888888888878777 457788888888888888888888888888
Q ss_pred cccceEEeeccccc
Q 036588 521 SYLRILVVQFNNFS 534 (541)
Q Consensus 521 ~~L~~L~l~~~~~~ 534 (541)
++|+.+++..+.+.
T Consensus 301 ~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 301 PANCIILVPPHLQA 314 (328)
T ss_dssp CTTCEEECCGGGSC
T ss_pred cCceEEeCCHHHHH
Confidence 88888888876553
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=1.8e-23 Score=206.20 Aligned_cols=245 Identities=25% Similarity=0.285 Sum_probs=126.3
Q ss_pred CcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccc-cccccCCCcEEeccC
Q 036588 259 LEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTIL-YVGHLLQLQWLDLSD 337 (541)
Q Consensus 259 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~ 337 (541)
...++..+..+. ..|..+. ++++.|++++|.+....+..+..+++|+.|++++|.+..... .+..+++|++|++++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 345555555544 3343332 456667777666665555566666666666666666554432 255566666666666
Q ss_pred ccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccc-cCCCcCCcCCccCCeEEcccCCCCCc
Q 036588 338 NQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFY-GEIPSDTQNCSYLRILVLKFNNFPGA 416 (541)
Q Consensus 338 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~ 416 (541)
|.+.......+..+++|++|++++|.++ .++...+..+++|+.|++.+|... ......|..+++|++|++++|.+...
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 6555444445555566666666665554 444444555555555555553322 12222445555555555555555422
Q ss_pred cchhhhccCCCcEEEccccccccccCC-CcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccC
Q 036588 417 IPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHN 495 (541)
Q Consensus 417 ~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 495 (541)
+ .+..+++|+.|++++|.+....+. +..+++|+.|++++|.+....+..+..+++|++|++++|++. .++...+..
T Consensus 201 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~ 277 (440)
T 3zyj_A 201 -P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTP 277 (440)
T ss_dssp -C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-CCCTTTTSS
T ss_pred -c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-ccChhHhcc
Confidence 1 244455555555555554443322 444455555555555554444444445555555555555442 233344444
Q ss_pred Ccccceeeeccceec
Q 036588 496 LPFLEELYLSNNMFY 510 (541)
Q Consensus 496 ~~~L~~L~l~~~~~~ 510 (541)
+++|+.|++++|++.
T Consensus 278 l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 278 LHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTCCEEECCSSCEE
T ss_pred ccCCCEEEcCCCCcc
Confidence 455555555555544
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=9.9e-24 Score=208.75 Aligned_cols=246 Identities=23% Similarity=0.203 Sum_probs=152.7
Q ss_pred CcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEEecC
Q 036588 47 LQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLS 126 (541)
Q Consensus 47 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~ 126 (541)
.+.++.++..++ .+|..+. +++++|++++|.+.+..+..+.. +++|++|++++|.+....+..|.++++|++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~---- 127 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRH-LHHLEVLQLGRNSIRQIEVGAFNGLASLNT---- 127 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCE----
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCC-CCCCCEEECCCCccCCcChhhccCcccCCE----
Confidence 355666655555 4554433 46666666666664333334433 666777777666666555566666666666
Q ss_pred CCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCc-eeeeecc-CC
Q 036588 127 LNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYN-KLQGTIP-YA 204 (541)
Q Consensus 127 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~-~~ 204 (541)
|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|+++++ .+..... .+
T Consensus 128 ---------------L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~ 192 (452)
T 3zyi_A 128 ---------------LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192 (452)
T ss_dssp ---------------EECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT
T ss_pred ---------------EECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhc
Confidence 333344444444445566666666666666665444445666666666666653 3332322 25
Q ss_pred CCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCccccc
Q 036588 205 GHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLR 284 (541)
Q Consensus 205 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 284 (541)
..+++|++|++++|.+... + .+..+++|+.|++++|.+. .++...|..+++|+.|++.+|.+....+..|..+++|+
T Consensus 193 ~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 269 (452)
T 3zyi_A 193 EGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269 (452)
T ss_dssp TTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCS-EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCc-ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCC
Confidence 6666777777777666532 2 3556677777777777764 34444557777777777777777777777777777888
Q ss_pred EEEecccccCCCccccccccCCccEEEeeCCccc
Q 036588 285 ILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQ 318 (541)
Q Consensus 285 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 318 (541)
.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 270 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp EEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred EEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 8888887777655566677778888888777654
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=2.4e-23 Score=206.03 Aligned_cols=227 Identities=24% Similarity=0.220 Sum_probs=116.4
Q ss_pred ccccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcc
Q 036588 281 SYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLS 360 (541)
Q Consensus 281 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 360 (541)
++++.|++++|.+....+..+..+++|+.|++++|.+.. ..+..+..+++|++|+++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-----------------------~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ-----------------------IEVGAFNGLASLNTLELF 131 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-----------------------ECTTTTTTCTTCCEEECC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCC-----------------------cChhhccCcccCCEEECC
Confidence 455555555555554444455555555555555555443 333344444444444444
Q ss_pred cCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccC-CCCCccchhhhccCCCcEEEcccccccc
Q 036588 361 SNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFN-NFPGAIPKEISNLTKLEKLDLQYNRLQG 439 (541)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 439 (541)
+|.++ .++...+..+++|++|++++|++....+..|..+++|++|++++| .+....+..|..+++|+.|++++|.+..
T Consensus 132 ~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 132 DNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp SSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred CCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence 44443 333344444555555555555444333334455555555555542 2222333345555555555555555542
Q ss_pred ccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCC
Q 036588 440 TIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPN 519 (541)
Q Consensus 440 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 519 (541)
.+.+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+ +....+..+++|+.|++++|.+.+..++.+..
T Consensus 211 -~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (452)
T 3zyi_A 211 -MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL-IERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288 (452)
T ss_dssp -CCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred -cccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCce-ECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence 2334455555555665555555555555555666666666665533 32244555556666666666555444445555
Q ss_pred ccccceEEeecccc
Q 036588 520 CSYLRILVVQFNNF 533 (541)
Q Consensus 520 ~~~L~~L~l~~~~~ 533 (541)
+++|+.|++++|++
T Consensus 289 l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 289 LRYLVELHLHHNPW 302 (452)
T ss_dssp CTTCCEEECCSSCE
T ss_pred ccCCCEEEccCCCc
Confidence 56666666665554
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=2.6e-23 Score=205.02 Aligned_cols=245 Identities=22% Similarity=0.199 Sum_probs=115.7
Q ss_pred EEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccc
Q 036588 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKS 103 (541)
Q Consensus 24 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 103 (541)
+.++.++.+++ .+|..+. ++++.|+|++|.++...+..|.++++|++|++++|.+. .++...+.++++|++|++++
T Consensus 46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCC
Confidence 34455555555 3444333 45566666666665444555666666666666666553 33333333366666666666
Q ss_pred cccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCc-ccccCCcccc
Q 036588 104 NMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNN-FSGAIPKEIS 182 (541)
Q Consensus 104 ~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-i~~~~~~~l~ 182 (541)
|+++...+..|..+++|++ |++++|.+....+..|..+++|+.|+++++. +....+..+.
T Consensus 122 n~l~~~~~~~~~~l~~L~~-------------------L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~ 182 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKE-------------------LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCE-------------------EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT
T ss_pred CcCCeeCHhHhhccccCce-------------------eeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhh
Confidence 6555444444555555555 3333333333333445555555555555522 2222222344
Q ss_pred ccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEE
Q 036588 183 NLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEEL 262 (541)
Q Consensus 183 ~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 262 (541)
.+++|++|++++|.+... +.+..+++|+.|++++|.+....+..+ ..+++|+.|
T Consensus 183 ~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~-------------------------~~l~~L~~L 236 (440)
T 3zyj_A 183 GLSNLRYLNLAMCNLREI-PNLTPLIKLDELDLSGNHLSAIRPGSF-------------------------QGLMHLQKL 236 (440)
T ss_dssp TCSSCCEEECTTSCCSSC-CCCTTCSSCCEEECTTSCCCEECTTTT-------------------------TTCTTCCEE
T ss_pred cccccCeecCCCCcCccc-cccCCCcccCEEECCCCccCccChhhh-------------------------ccCccCCEE
Confidence 445555555555444422 223444444444444444433333333 344444444
Q ss_pred EecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCcc
Q 036588 263 YLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRL 317 (541)
Q Consensus 263 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 317 (541)
++.+|.+....+..|..+++|+.|++++|.+....+..+..+++|+.|++++|.+
T Consensus 237 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 237 WMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp ECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred ECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 4444444444444444444455555555444433334444445555555555443
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=9.1e-24 Score=195.68 Aligned_cols=206 Identities=26% Similarity=0.250 Sum_probs=124.2
Q ss_pred CCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccc-cCCCccccccccCCccEE
Q 036588 232 PLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNN-FSGAIPKEISNLTKLEKL 310 (541)
Q Consensus 232 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L 310 (541)
+++++|+++++.+. .++...|..+++|+.|+++++.+....+..+..+++|++|++++|. +....+..+..+++|+.|
T Consensus 32 ~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 32 AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp TTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 45555555555553 2333344555566666666655555555556666666666666664 444444555556666666
Q ss_pred EeeCCcccccccc-ccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCccc
Q 036588 311 DLQYNRLQGTILY-VGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMF 389 (541)
Q Consensus 311 ~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 389 (541)
++++|.+....+. +..+++|++|++++|.+....+..+..+++|+.|++++|.++ .++...+..+++|+.|++++|.+
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-ccCHHHhcCccccCEEECCCCcc
Confidence 6666655543222 455556666666666555444445556666777777766665 44555555667777777777776
Q ss_pred ccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEcccccccc
Q 036588 390 YGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQG 439 (541)
Q Consensus 390 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 439 (541)
.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|++..
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 65556666777777777777777766655666677777777777776653
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=9.9e-24 Score=195.43 Aligned_cols=250 Identities=23% Similarity=0.227 Sum_probs=152.4
Q ss_pred CCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEecc
Q 036588 257 PFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLS 336 (541)
Q Consensus 257 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 336 (541)
+++++|+++++.+....+..|..+++|++|++++|.+....+..+..+++|+.|++++|..
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~------------------- 92 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ------------------- 92 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT-------------------
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC-------------------
Confidence 4555555555555544444455555555555555554433344444444445444444430
Q ss_pred CccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCc
Q 036588 337 DNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGA 416 (541)
Q Consensus 337 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 416 (541)
+....+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+....+..+..+++|++|++++|.+...
T Consensus 93 ---l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 93 ---LRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp ---CCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred ---ccccCHHHhcCCcCCCEEECCCCcCC-EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence 33333444555666666666666655 34444455667777777777766644445566777777777777777765
Q ss_pred cchhhhccCCCcEEEccccccccccCC-CcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccC
Q 036588 417 IPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHN 495 (541)
Q Consensus 417 ~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 495 (541)
.+..+..+++|+.|++++|.+....+. +..+++|+.|++++|.+....+..+..+++|++|++++|++....+...+
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~-- 246 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL-- 246 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHH--
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHH--
Confidence 555677777777777777777655443 66677888888888887766556677888888888888887554332211
Q ss_pred CcccceeeeccceecccCCCCCCC--ccccceEEeecc
Q 036588 496 LPFLEELYLSNNMFYGEIPSDTPN--CSYLRILVVQFN 531 (541)
Q Consensus 496 ~~~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~~ 531 (541)
...++.+....+.+....|+.++. +..++..++.+|
T Consensus 247 ~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 247 WAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp HHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred HHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 234566666666666667766554 455666566655
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=2.2e-25 Score=209.09 Aligned_cols=250 Identities=20% Similarity=0.195 Sum_probs=147.1
Q ss_pred cccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCcc-CCCCChhhh------hhcCCCcEeeccccccCccCCc
Q 036588 40 ELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNAL-FGELPPNFC------NHLSNLESLFLKSNMFHGKIPS 112 (541)
Q Consensus 40 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~------~~l~~L~~L~l~~~~~~~~~~~ 112 (541)
.++..++|++|+++++.+ .+|..+... |++|++++|.+ ...+|..+. .++++|++|++++|.+++..|.
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 345667777777777777 566655544 67777777766 223444443 1277788888877777766666
Q ss_pred cC--CCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCC-----CCccEEEeccCcccccCCccccccC
Q 036588 113 TL--SSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANC-----SYLRILVLQFNNFSGAIPKEISNLT 185 (541)
Q Consensus 113 ~~--~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~i~~~~~~~l~~l~ 185 (541)
.+ ..+++|++| ++++|.+.+. +..+..+ ++|++|++++|.+....+..++.++
T Consensus 114 ~~~~~~l~~L~~L-------------------~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 114 PLLEATGPDLNIL-------------------NLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp CSSSCCSCCCSEE-------------------EEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred HHHHhcCCCccEE-------------------EccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 55 667777664 4444444433 3344433 5666666666665544445555666
Q ss_pred CCcEEEccCceeeee---ccC--CCCcCCCCEEECCCCcccCC---CCcccCCCCCccEEeccCCcccCcCChhhhccCC
Q 036588 186 KLEKLDLQYNKLQGT---IPY--AGHLYQLQWLDLSDNQLSGS---LPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLP 257 (541)
Q Consensus 186 ~L~~L~l~~~~~~~~---~~~--~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 257 (541)
+|++|++++|.+.+. ... +..+++|++|++++|.+... ....+..+++|++|++++|.+.+..+...+..++
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 253 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence 666666666554322 111 25566666666666655421 1122334566666666666665444333445566
Q ss_pred CCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccc
Q 036588 258 FLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQ 318 (541)
Q Consensus 258 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 318 (541)
+|+.|++++|.++ ..|..+. ++|++|++++|.+... +. +..+++|+.|++++|.+.
T Consensus 254 ~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 254 QLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp TCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred CCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 7777777777665 4454444 6677777777777644 33 667777777777777654
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=6.1e-23 Score=188.23 Aligned_cols=215 Identities=25% Similarity=0.319 Sum_probs=162.5
Q ss_pred CCccccceeeeCCCCCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCC
Q 036588 6 SSVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGEL 85 (541)
Q Consensus 6 ~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 85 (541)
.++|.|.|..|.. ...++++++++++++ .+|..+. ++++.|+++++.++...+..|.++++|++|++++|.+ +.+
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~i 76 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTL 76 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC-SCC
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc-Cee
Confidence 4789999999975 346889999999999 4666554 6899999999999866667899999999999999998 477
Q ss_pred ChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccE
Q 036588 86 PPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRI 165 (541)
Q Consensus 86 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 165 (541)
+..++..+++|++|++++|.+....+..+..+++|++ |++++|.+....+..+..+++|+.
T Consensus 77 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-------------------L~l~~n~l~~~~~~~~~~l~~L~~ 137 (270)
T 2o6q_A 77 PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAE-------------------LRLDRNQLKSLPPRVFDSLTKLTY 137 (270)
T ss_dssp CTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCE-------------------EECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCE-------------------EECCCCccCeeCHHHhCcCcCCCE
Confidence 7777666999999999999988766667777777777 455555566555666777888888
Q ss_pred EEeccCcccccCCccccccCCCcEEEccCceeeeeccC-CCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcc
Q 036588 166 LVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPY-AGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRL 244 (541)
Q Consensus 166 L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 244 (541)
|++++|.+....+..+..+++|++|++++|.+....+. +..+++|+.|++++|.+....+..+..+++|+.|++++|.+
T Consensus 138 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 138 LSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 88888877755555567777777777777777655543 56667777777777766654444555666666666666655
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=5.3e-25 Score=206.95 Aligned_cols=263 Identities=19% Similarity=0.130 Sum_probs=185.8
Q ss_pred ccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEee
Q 036588 234 LQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQ 313 (541)
Q Consensus 234 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 313 (541)
++..+++.+.+. ..+...+..+++|++|++++|.+....+..+..+++|++|++++|.+....+ +..+++|+.|+++
T Consensus 12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 444555555552 3445566777889999999888887666778888889999998888764433 7788888999988
Q ss_pred CCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCC
Q 036588 314 YNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEI 393 (541)
Q Consensus 314 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 393 (541)
+|.+.... ..++|++|++++|.+..... ..+++|++|++++|.++ ..+...+..+++|+.|++++|.+.+..
T Consensus 89 ~n~l~~l~----~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 89 NNYVQELL----VGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SSEEEEEE----ECTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCC-SGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCcccccc----CCCCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCC-CccchhhhccCCCCEEECCCCCCCccc
Confidence 88776433 34788888888887764332 23577888888888876 444445567788888888888776544
Q ss_pred CcCC-cCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCC
Q 036588 394 PSDT-QNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMP 472 (541)
Q Consensus 394 ~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 472 (541)
+..+ ..+++|++|++++|.+.... ....+++|++|++++|++....+.+..+++|+.|++++|.+. .++..+..++
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~ 237 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCT
T ss_pred HHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhHhhcCC
Confidence 4444 46778888888888776542 223477888888888887766555677788888888888777 4566677778
Q ss_pred CccEeeCCCCccccccCcccccCCcccceeeeccceec
Q 036588 473 LLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFY 510 (541)
Q Consensus 473 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 510 (541)
+|+.|++++|++........+..++.|+.+++.+++..
T Consensus 238 ~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l 275 (317)
T 3o53_A 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275 (317)
T ss_dssp TCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCEEEccCCCccCcCHHHHHhccccceEEECCCchhc
Confidence 88888888888752233356677777888887755533
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=1e-22 Score=206.21 Aligned_cols=278 Identities=26% Similarity=0.240 Sum_probs=181.0
Q ss_pred CCCCCCCccccceee------eCCCCCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEE
Q 036588 1 NWNTSSSVCNWTGIT------CDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSI 74 (541)
Q Consensus 1 ~~~~~~~~~~~~~~~------~~~~~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 74 (541)
+|..+..+|.|++.. |......+++|++++++++ .+|..+. ++|++|++++|.++ .+|. .+++|++|
T Consensus 14 ~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L 86 (622)
T 3g06_A 14 AWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTL 86 (622)
T ss_dssp HHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEE
T ss_pred HHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEE
Confidence 377788899986532 2222336899999999999 6677665 89999999999998 6776 57899999
Q ss_pred EeecCccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCcccccc-ccCcceEEEecCccccccC
Q 036588 75 NFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDH-TKRNWQQLYLSKNMFYGEI 153 (541)
Q Consensus 75 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~ 153 (541)
++++|.+ +.+|. .+++|++|++++|.++. +|. .+++|++|++++|.+.... ..++|++|++++|.+...
T Consensus 87 ~Ls~N~l-~~lp~----~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~l- 156 (622)
T 3g06_A 87 EVSGNQL-TSLPV----LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASL- 156 (622)
T ss_dssp EECSCCC-SCCCC----CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCC-
T ss_pred EcCCCcC-CcCCC----CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCCc-
Confidence 9999998 46776 38999999999999884 343 5677888777777665322 236677777776666542
Q ss_pred CccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCC
Q 036588 154 PSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPL 233 (541)
Q Consensus 154 ~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 233 (541)
+. .+++|+.|++++|.+.. ++ ..+++|+.|++++|.+..... .+++|+.|++++|.+. .++. .+++
T Consensus 157 ~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~-~l~~---~~~~ 222 (622)
T 3g06_A 157 PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASLPT---LPSELYKLWAYNNRLT-SLPA---LPSG 222 (622)
T ss_dssp CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-SCCC---CCTT
T ss_pred CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCCCC---ccchhhEEECcCCccc-ccCC---CCCC
Confidence 22 23566666776666653 33 334666666666666654332 2356666666666655 2222 2356
Q ss_pred ccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEee
Q 036588 234 LQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQ 313 (541)
Q Consensus 234 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 313 (541)
|+.|++++|.+.. ++ ..+++|+.|++++|.+.. +|. .+++|+.|++++|.+. .++..+..+++|+.|+++
T Consensus 223 L~~L~Ls~N~L~~-lp----~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 223 LKELIVSGNRLTS-LP----VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292 (622)
T ss_dssp CCEEECCSSCCSC-CC----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred CCEEEccCCccCc-CC----CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence 6666666666532 33 344566666666666552 232 3456666666666665 445556666666666666
Q ss_pred CCcccc
Q 036588 314 YNRLQG 319 (541)
Q Consensus 314 ~~~~~~ 319 (541)
+|.+..
T Consensus 293 ~N~l~~ 298 (622)
T 3g06_A 293 GNPLSE 298 (622)
T ss_dssp SCCCCH
T ss_pred CCCCCC
Confidence 665543
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=2.6e-24 Score=202.22 Aligned_cols=257 Identities=22% Similarity=0.183 Sum_probs=148.1
Q ss_pred EECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccc
Q 036588 213 LDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNN 292 (541)
Q Consensus 213 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 292 (541)
.+++.+.+.......+..+++|++|++++|.+. .++...|..+++|+.|++++|.+.+..+ +..+++|++|++++|.
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY 91 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc
Confidence 344444443333333444556666666666664 3344445666666666666666654333 5666666666666666
Q ss_pred cCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhh
Q 036588 293 FSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNV 372 (541)
Q Consensus 293 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 372 (541)
+.. +...++|+.|++++|.+..... ..+++|++|++++|.+....+..+..+++|+.|++++|.++...+...
T Consensus 92 l~~-----l~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 164 (317)
T 3o53_A 92 VQE-----LLVGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164 (317)
T ss_dssp EEE-----EEECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred ccc-----ccCCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH
Confidence 542 2233666666666666554332 234566666666666665545555566666666666666653333333
Q ss_pred hcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcce
Q 036588 373 FHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQW 452 (541)
Q Consensus 373 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 452 (541)
+..+++|++|++++|.+... .....+++|++|++++|.+.... ..+..+++|+.|++++|++......+..+++|+.
T Consensus 165 ~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~ 241 (317)
T 3o53_A 165 AASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH 241 (317)
T ss_dssp GGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCE
T ss_pred hhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCcch-hhhcccCcccEEECcCCcccchhhHhhcCCCCCE
Confidence 34566666666666666533 12234666666666666666433 3366666666666666666654444556666666
Q ss_pred EeccCCcCC-CCCCccccCCCCccEeeCCCC
Q 036588 453 LDLSDNQLS-GSLPSFKFKMPLLQFLDLSSN 482 (541)
Q Consensus 453 L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~ 482 (541)
|++++|++. +..+.++..+++|+.+++.++
T Consensus 242 L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp EECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred EEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 666666665 344555666666666666544
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=2.5e-24 Score=201.92 Aligned_cols=248 Identities=27% Similarity=0.245 Sum_probs=150.5
Q ss_pred hhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccccccCc-cCCccCC-------CCCCCcEEecCCCcccccccc
Q 036588 65 IFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHG-KIPSTLS-------SCKRLRETSLSLNDFFWDHTK 136 (541)
Q Consensus 65 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~-------~l~~L~~l~~~~~~~~~~~~~ 136 (541)
++..++|++|++.+|.+ .+|..+... |++|+++++.+.. ..+..+. ++++|++
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~-------------- 99 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQE-------------- 99 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCE--------------
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccE--------------
Confidence 44556667777777766 666666552 6666777666642 2333332 3444444
Q ss_pred CcceEEEecCccccccCCccc--cCCCCccEEEeccCcccccCCcccccc-----CCCcEEEccCceeeeecc-CCCCcC
Q 036588 137 RNWQQLYLSKNMFYGEIPSDI--ANCSYLRILVLQFNNFSGAIPKEISNL-----TKLEKLDLQYNKLQGTIP-YAGHLY 208 (541)
Q Consensus 137 ~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~i~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~-~~~~~~ 208 (541)
|++++|.+.+..+..+ ..+++|++|++++|.+... |..++.+ ++|++|++++|.+....+ .+..++
T Consensus 100 -----L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 100 -----LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp -----EEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred -----EEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 5555666665555554 6677777777777776644 5666655 677777777777665553 366677
Q ss_pred CCCEEECCCCcccCC--CCccc--CCCCCccEEeccCCcccC--cCChhhhccCCCCcEEEecCccccccCC-CCCcCcc
Q 036588 209 QLQWLDLSDNQLSGS--LPSFK--FKMPLLQFLDLSSNRLSA--ELPTNVFHNLPFLEELYLSNNMFYGEIP-SDTANCS 281 (541)
Q Consensus 209 ~L~~L~l~~~~~~~~--~~~~~--~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~ 281 (541)
+|+.|++++|.+.+. .+..+ ..+++|++|++++|.+.. .++...+..+++|+.|++++|.+.+..+ ..+..++
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 253 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence 777777777764322 11122 556777777777776642 2233445566777777777776665442 3445566
Q ss_pred cccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCcccc
Q 036588 282 YLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLS 341 (541)
Q Consensus 282 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 341 (541)
+|++|++++|.++ .++..+. ++|+.|++++|.+... +.+..+++|++|++++|.+.
T Consensus 254 ~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 254 QLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp TCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTT
T ss_pred CCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCC
Confidence 7777777777666 4444443 6677777777776654 33666677777777776654
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=2.1e-21 Score=196.66 Aligned_cols=265 Identities=27% Similarity=0.205 Sum_probs=160.4
Q ss_pred CCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEE
Q 036588 208 YQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILV 287 (541)
Q Consensus 208 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 287 (541)
.+++.|+++++.+. .+|..+. ++|++|++++|.+. .++. .+++|+.|++++|.+.. +|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEE
Confidence 35888999888887 5555443 78888888888874 4443 46788888888887763 333 567788888
Q ss_pred ecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCc
Q 036588 288 LRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVE 367 (541)
Q Consensus 288 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 367 (541)
+++|.+... +. .+++|+.|++++|.+..... .+++|++|++++|.+... +. .+++|+.|.+++|.++ .
T Consensus 108 Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~-~ 175 (622)
T 3g06_A 108 IFSNPLTHL-PA---LPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLT-S 175 (622)
T ss_dssp ECSCCCCCC-CC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS-C
T ss_pred CcCCcCCCC-CC---CCCCcCEEECCCCCCCcCCC---CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCC-C
Confidence 888877643 22 45677888888777664332 236777777777766532 21 3456677777777665 3
Q ss_pred CChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCccc
Q 036588 368 LPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHL 447 (541)
Q Consensus 368 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 447 (541)
++ ..+++|+.|++++|.+.+ ++. .+++|+.|++++|.+.... . .+++|+.|++++|.+.... ..+
T Consensus 176 l~----~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~-~---~~~~L~~L~Ls~N~L~~lp---~~l 240 (622)
T 3g06_A 176 LP----MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLP-A---LPSGLKELIVSGNRLTSLP---VLP 240 (622)
T ss_dssp CC----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCC-C---CCTTCCEEECCSSCCSCCC---CCC
T ss_pred Cc----ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccccC-C---CCCCCCEEEccCCccCcCC---CCC
Confidence 43 245667777777666652 221 2356666666666655322 1 1355666666666555322 334
Q ss_pred CCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCC
Q 036588 448 FQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDT 517 (541)
Q Consensus 448 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 517 (541)
++|+.|++++|.+. .+|. .+++|+.|++++|.+. .+| ..+..+++|+.|++++|++.+..+..+
T Consensus 241 ~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp-~~l~~l~~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 241 SELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLP-ESLIHLSSETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCC-GGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred CcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCC-HHHhhccccCEEEecCCCCCCcCHHHH
Confidence 55666666666555 2332 3455666666666553 444 345556666666666666555444433
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=8.5e-23 Score=202.92 Aligned_cols=235 Identities=21% Similarity=0.153 Sum_probs=132.5
Q ss_pred CCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEecc
Q 036588 257 PFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLS 336 (541)
Q Consensus 257 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 336 (541)
++|+.|++++|.+....+..|..+++|++|++++|.+....+ +..+++|+.|++++|.+.... ..++|++|+++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~----~~~~L~~L~L~ 107 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----VGPSIETLHAA 107 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE----ECTTCCEEECC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC----CCCCcCEEECc
Confidence 467777777777766656667777777777777776654332 666677777777777655332 22566666666
Q ss_pred CccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCc-CCccCCeEEcccCCCCC
Q 036588 337 DNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQ-NCSYLRILVLKFNNFPG 415 (541)
Q Consensus 337 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~ 415 (541)
+|.+....+ ..+++|+.|++++|.++ ......+..+++|+.|++++|.+.+..+..+. .+++|++|++++|.+..
T Consensus 108 ~N~l~~~~~---~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 108 NNNISRVSC---SRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp SSCCCCEEE---CCCSSCEEEECCSSCCC-SGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCcCCCCCc---cccCCCCEEECCCCCCC-CCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 666553322 23456666666666655 23233334556666666666665544444443 45666666666665553
Q ss_pred ccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccc-cccCccccc
Q 036588 416 AIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLS-TELPTNVFH 494 (541)
Q Consensus 416 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~ 494 (541)
.. ....+++|+.|++++|.+.+..+.+..+++|+.|++++|.+. .+|..+..+++|+.|++++|++. +.++ ..+.
T Consensus 184 ~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~-~~~~ 259 (487)
T 3oja_A 184 VK--GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR-DFFS 259 (487)
T ss_dssp EE--CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHH-HHHT
T ss_pred cc--ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchH-HHHH
Confidence 31 122355666666666665554444555556666666666555 34444555556666666666554 2222 3344
Q ss_pred CCcccceeeec
Q 036588 495 NLPFLEELYLS 505 (541)
Q Consensus 495 ~~~~L~~L~l~ 505 (541)
.++.|+.+++.
T Consensus 260 ~l~~L~~l~~~ 270 (487)
T 3oja_A 260 KNQRVQTVAKQ 270 (487)
T ss_dssp TCHHHHHHHHH
T ss_pred hCCCCcEEecc
Confidence 55555555554
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=3.6e-21 Score=177.30 Aligned_cols=203 Identities=22% Similarity=0.181 Sum_probs=111.0
Q ss_pred CeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeec
Q 036588 22 RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFL 101 (541)
Q Consensus 22 ~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 101 (541)
++++|+++++++++..+..|.++++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+.. +++|++|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT-CTTCCEEEC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC-CccccEEEC
Confidence 4666666666666555556666666666666666665444445666666666666666553322233333 666666666
Q ss_pred cccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCcccccc-CCccccCCCCccEEEeccCcccccCCcc
Q 036588 102 KSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGE-IPSDIANCSYLRILVLQFNNFSGAIPKE 180 (541)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 180 (541)
++|.+....+..+.++++|++ |++++|.+... ++..+..+++|+.|++++|.+....+..
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~-------------------L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKE-------------------LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCE-------------------EECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CCCCccccCchhcccCCCCCE-------------------EECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 666555444444555555555 44444444432 3555666666666666666666554455
Q ss_pred ccccCCCc----EEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcc
Q 036588 181 ISNLTKLE----KLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRL 244 (541)
Q Consensus 181 l~~l~~L~----~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 244 (541)
+..+++|+ +|++++|.+....+......+|+.|++++|.+....+..+..+++|+.|++++|.+
T Consensus 169 ~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp GHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred hhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 55555555 55666665555444433334555555555555543333444455555555555544
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=2.4e-20 Score=170.96 Aligned_cols=202 Identities=28% Similarity=0.306 Sum_probs=147.9
Q ss_pred CccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEcc
Q 036588 306 KLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLS 385 (541)
Q Consensus 306 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 385 (541)
+.+.++++++.+......+ .++++.|+++++.+....+..+..+++|++|++++|.++ .++...|..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECC
Confidence 4677888877776443323 257888888888877666667777888888888888776 6666667778888888888
Q ss_pred CcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCC-CcccCCcceEeccCCcCCCCC
Q 036588 386 NNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSGSL 464 (541)
Q Consensus 386 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~ 464 (541)
+|.+....+..+..+++|++|++++|.+....+..|..+++|+.|++++|.+....+. +..+++|+.|++++|.+....
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 8887755555677788888888888887777777777788888888888877655444 566777888888877777666
Q ss_pred CccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecc
Q 036588 465 PSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYG 511 (541)
Q Consensus 465 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 511 (541)
+..+..+++|++|++++|++. .++...+..+++|+.|++++|++..
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCeeC
Confidence 666777777888888777774 4555666777778888887777763
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=6e-21 Score=175.07 Aligned_cols=226 Identities=24% Similarity=0.249 Sum_probs=153.2
Q ss_pred ccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccC
Q 036588 283 LRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSN 362 (541)
Q Consensus 283 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 362 (541)
+..+.+.++.+.+. .....+++|+.|+++++.+. ....+..+++|++|++++|.+... ..+..+++|++|++++|
T Consensus 21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGN 95 (272)
T ss_dssp HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CCTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTS
T ss_pred HHHHHhcCcccccc--cccccccceeeeeeCCCCcc-cccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCC
Confidence 33444444444322 23456788888888888766 334577778888888888877642 35667777888888877
Q ss_pred cCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccC
Q 036588 363 RLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIP 442 (541)
Q Consensus 363 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 442 (541)
.++ .++...+..+++|++|++.+|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|++....+
T Consensus 96 ~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 96 QLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence 776 4555556677777777777777765555556777777777777777776666666777777777777777765444
Q ss_pred C-CcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCcc
Q 036588 443 Y-AGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCS 521 (541)
Q Consensus 443 ~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 521 (541)
. +..+++|+.|++++|.+....+..+..+++|++|++++|++.+ .+++|+.++++.|.+.+.+|..+..++
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC--------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc--------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence 3 4566777777777777776666666677777777777776632 345677777777777777777666654
Q ss_pred c
Q 036588 522 Y 522 (541)
Q Consensus 522 ~ 522 (541)
.
T Consensus 247 ~ 247 (272)
T 3rfs_A 247 P 247 (272)
T ss_dssp G
T ss_pred C
Confidence 4
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=8.4e-22 Score=195.77 Aligned_cols=237 Identities=23% Similarity=0.175 Sum_probs=132.2
Q ss_pred CCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEE
Q 036588 231 MPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKL 310 (541)
Q Consensus 231 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 310 (541)
+++|++|++++|.+.+ ++...|..+++|+.|++++|.+.+..+ +..+++|++|++++|.+... ...++|+.|
T Consensus 33 ~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-----~~~~~L~~L 104 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETL 104 (487)
T ss_dssp GGGCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-----EECTTCCEE
T ss_pred CCCccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-----CCCCCcCEE
Confidence 3456666666666542 333444666666666666666554333 55666666666666655421 123566666
Q ss_pred EeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccc
Q 036588 311 DLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFY 390 (541)
Q Consensus 311 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 390 (541)
++++|.+..... ..+++|+.|++++|.+....+..+..+++|+.|++++|.+++..+......+++|+.|++++|.+.
T Consensus 105 ~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 105 HAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp ECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred ECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 666666554332 234566666666666655555555556666666666666654344444345666666666666654
Q ss_pred cCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCC-CCCCcccc
Q 036588 391 GEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLS-GSLPSFKF 469 (541)
Q Consensus 391 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~ 469 (541)
+. .....+++|++|++++|.++...+ .+..+++|+.|++++|.+.+..+.+..+++|+.|++++|++. ...+.++.
T Consensus 183 ~~--~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 183 DV--KGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp EE--ECCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred cc--cccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 33 122345666666666666654333 355666666666666666554444555566666666666554 23344455
Q ss_pred CCCCccEeeCC
Q 036588 470 KMPLLQFLDLS 480 (541)
Q Consensus 470 ~~~~L~~L~l~ 480 (541)
.++.|+.+++.
T Consensus 260 ~l~~L~~l~~~ 270 (487)
T 3oja_A 260 KNQRVQTVAKQ 270 (487)
T ss_dssp TCHHHHHHHHH
T ss_pred hCCCCcEEecc
Confidence 55555555553
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.85 E-value=8.5e-21 Score=174.77 Aligned_cols=205 Identities=27% Similarity=0.274 Sum_probs=153.3
Q ss_pred CCccEEEeeCCccccccc-cccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEE
Q 036588 305 TKLEKLDLQYNRLQGTIL-YVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELY 383 (541)
Q Consensus 305 ~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 383 (541)
++|+.|++++|.+..... .+..+++|++|++++|.+....+..+..+++|++|++++|.++ .++...+..+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC-ccChhhhcCCccccEEE
Confidence 478999999998876655 4778888999999888887666667788888888888888886 45555667888888888
Q ss_pred ccCcccccCCCcCCcCCccCCeEEcccCCCCCc-cchhhhccCCCcEEEccccccccccCC-CcccCCcc----eEeccC
Q 036588 384 LSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGA-IPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQ----WLDLSD 457 (541)
Q Consensus 384 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~----~L~l~~ 457 (541)
+.+|.+....+..+..+++|++|++++|.+... .+..+..+++|+.|++++|++....+. +..+++|+ .|++++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 888888765555688888888888888888764 477888888888888888887755432 44455555 778888
Q ss_pred CcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceeccc
Q 036588 458 NQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGE 512 (541)
Q Consensus 458 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 512 (541)
|.+....+..+ ...+|++|++++|.+. .++...+..+++|+.|++++|++.+.
T Consensus 187 n~l~~~~~~~~-~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 187 NPMNFIQPGAF-KEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp SCCCEECTTSS-CSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred CcccccCcccc-CCCcccEEECCCCcee-ecCHhHhcccccccEEEccCCccccc
Confidence 87774444333 3347888888888774 45556677778888888888887743
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=2.5e-20 Score=170.87 Aligned_cols=200 Identities=25% Similarity=0.264 Sum_probs=93.4
Q ss_pred CcccccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEE
Q 036588 279 NCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLD 358 (541)
Q Consensus 279 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 358 (541)
.+++|+.|++.++.+... ..+..+++|+.|++++|.+.. ...+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 344455555555444321 224445555555555554442 22344445555555555554444434444455555555
Q ss_pred cccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccc
Q 036588 359 LSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQ 438 (541)
Q Consensus 359 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 438 (541)
+++|.++ .++...+..+++|++|++.+|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 116 L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 116 LVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp CTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 5555544 333333444555555555555444333333444555555555555554444444444555555555555544
Q ss_pred cccCC-CcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccC
Q 036588 439 GTIPY-AGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELP 489 (541)
Q Consensus 439 ~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 489 (541)
+..+. +..+++|+.|++++|++. +.++.|+.+++..|.+.+.+|
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBB
T ss_pred ccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCccc
Confidence 33332 344455555555555433 234445555555454444444
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=1.2e-22 Score=193.19 Aligned_cols=213 Identities=22% Similarity=0.294 Sum_probs=129.8
Q ss_pred CCCccccceeeeCCCCCCeEEEEecCCcceeeeCCcccCC--CCCcEecccccccCCccchhhhhcCCCcEEEeecCccC
Q 036588 5 SSSVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNL--SSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALF 82 (541)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 82 (541)
+.++..|.+..++ ...++.++++++.+. +..+..+ ++++.|+++++.+.+..+. +.++++|++|++++|.+.
T Consensus 33 ~~vc~~W~~~~~~--~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~ 106 (336)
T 2ast_B 33 SGVCKRWYRLASD--ESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIE 106 (336)
T ss_dssp TSSCHHHHHHHTC--STTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEEC
T ss_pred HHHHHHHHHHhcC--chhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcC
Confidence 4567789888765 346889999998887 5567777 8899999999988855444 567889999999988874
Q ss_pred CC-CChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccc-cCCccccCC
Q 036588 83 GE-LPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYG-EIPSDIANC 160 (541)
Q Consensus 83 ~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~ 160 (541)
+. ++. ++.++++|++|++++|.+++..+..++++++|++|+++++. .+.+ .++..+..+
T Consensus 107 ~~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~------------------~l~~~~l~~~~~~~ 167 (336)
T 2ast_B 107 VSTLHG-ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS------------------GFSEFALQTLLSSC 167 (336)
T ss_dssp HHHHHH-HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCB------------------SCCHHHHHHHHHHC
T ss_pred HHHHHH-HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCC------------------CCCHHHHHHHHhcC
Confidence 43 333 34448899999998888876677777778888776665542 2222 123334455
Q ss_pred CCccEEEeccC-ccccc-CCccccccC-CCcEEEccCce--ee--eeccCCCCcCCCCEEECCCCc-ccCCCCcccCCCC
Q 036588 161 SYLRILVLQFN-NFSGA-IPKEISNLT-KLEKLDLQYNK--LQ--GTIPYAGHLYQLQWLDLSDNQ-LSGSLPSFKFKMP 232 (541)
Q Consensus 161 ~~L~~L~l~~~-~i~~~-~~~~l~~l~-~L~~L~l~~~~--~~--~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~ 232 (541)
++|++|++++| .+.+. ++..+..++ +|++|++++|. ++ .....+..+++|+.|++++|. +....+..+..++
T Consensus 168 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~ 247 (336)
T 2ast_B 168 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 247 (336)
T ss_dssp TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCC
Confidence 55666666555 44432 233445555 55555555552 22 111223344555555555554 3323333344444
Q ss_pred CccEEeccCC
Q 036588 233 LLQFLDLSSN 242 (541)
Q Consensus 233 ~L~~L~l~~~ 242 (541)
+|++|++++|
T Consensus 248 ~L~~L~l~~~ 257 (336)
T 2ast_B 248 YLQHLSLSRC 257 (336)
T ss_dssp TCCEEECTTC
T ss_pred CCCEeeCCCC
Confidence 4445544444
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=5.7e-22 Score=188.53 Aligned_cols=250 Identities=19% Similarity=0.151 Sum_probs=105.3
Q ss_pred CcEEEecCccccccCCCCCcCc--ccccEEEecccccCCCccccccccCCccEEEeeCCccccc-c-ccccccCCCcEEe
Q 036588 259 LEELYLSNNMFYGEIPSDTANC--SYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGT-I-LYVGHLLQLQWLD 334 (541)
Q Consensus 259 L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~-~~~~~~~~L~~L~ 334 (541)
++.++++++.+. +..+..+ ++++.+++.++.+....+. +..+++|++|++++|.+... . ..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 455555554432 1222333 4555555555554433322 33455555555555544321 1 1244455555555
Q ss_pred ccCccccCCCCcccCCCCcceEEEcccC-cCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCC
Q 036588 335 LSDNQLSGSLPSFKFNMPLLQFLDLSSN-RLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNF 413 (541)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 413 (541)
+++|.+....+..+..+++|++|++++| .+++......+..+++|++|++.+|. .+
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~-----------------------~l 181 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF-----------------------DF 181 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT-----------------------TC
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC-----------------------Cc
Confidence 5555443333333344455555555554 23321122223344444444444440 44
Q ss_pred CCc-cchhhhccC-CCcEEEccccc--cc--cccCCCcccCCcceEeccCCc-CCCCCCccccCCCCccEeeCCCCcccc
Q 036588 414 PGA-IPKEISNLT-KLEKLDLQYNR--LQ--GTIPYAGHLFQLQWLDLSDNQ-LSGSLPSFKFKMPLLQFLDLSSNRLST 486 (541)
Q Consensus 414 ~~~-~~~~l~~~~-~L~~L~l~~~~--~~--~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~ 486 (541)
+.. .+..+..++ +|++|++++|. +. .....+..+++|+.|++++|. +++..+..+..+++|++|++++|....
T Consensus 182 ~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 261 (336)
T 2ast_B 182 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 261 (336)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred ChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC
Confidence 321 233344444 55555555542 11 111113344455555555554 333333344445555555555553111
Q ss_pred ccCcccccCCcccceeeeccceecccCCCCCCCc-cccceEEeecccccccCCC
Q 036588 487 ELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNC-SYLRILVVQFNNFSGAIPK 539 (541)
Q Consensus 487 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~p~ 539 (541)
......+..+++|+.|++++| +. .+.+..+ ..++.|++++|.+++..|+
T Consensus 262 ~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 262 PETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp GGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred HHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccccCC
Confidence 111112344555555555555 11 1223332 2244444555555555444
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.82 E-value=3e-19 Score=164.90 Aligned_cols=202 Identities=23% Similarity=0.244 Sum_probs=135.4
Q ss_pred ccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCcc
Q 036588 301 ISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLE 380 (541)
Q Consensus 301 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 380 (541)
+..+++++.++++++.+......+ .++++.|++++|.+....+..+..+++|+.|++++|.++ .++.. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcCC
Confidence 456677888888877776444333 257778888877776655566777777777777777775 23222 4677777
Q ss_pred EEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCC-CcccCCcceEeccCCc
Q 036588 381 ELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQ 459 (541)
Q Consensus 381 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~ 459 (541)
.|++++|.+. .++..+..+++|++|++++|++....+..|..+++|+.|++++|++....+. +..+++|+.|++++|.
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 7777777775 4555666777777777777777766666677777777777777776654443 4566777777777777
Q ss_pred CCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceec
Q 036588 460 LSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFY 510 (541)
Q Consensus 460 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 510 (541)
+....+..+..+++|++|++++|++ ..++.. +...++|+.+++++|++.
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l-~~ip~~-~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSL-YTIPKG-FFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCC-CCCCTT-TTTTCCCSEEECCSCCBC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcC-CccChh-hcccccCCeEEeCCCCcc
Confidence 7655555556677777777777776 345533 334556777777777765
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=2e-19 Score=161.67 Aligned_cols=198 Identities=20% Similarity=0.187 Sum_probs=111.5
Q ss_pred CCeEEEEecCCcceeeeCCcccCCCCCcEecccccc-cCCccchhhhhcCCCcEEEeec-CccCCCCChhhhhhcCCCcE
Q 036588 21 YRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNW-FSGSIPASIFNMSSLLSINFIN-NALFGELPPNFCNHLSNLES 98 (541)
Q Consensus 21 ~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~ 98 (541)
..+++|+++++++++..+.+|+++++|++|++++|. ++...+..|.++++|++|++++ |.+ +.++...+.++++|++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l-~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL-TYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC-CEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe-eEcCHHHhCCCCCCCE
Confidence 367777777777776666667777777777777775 6544444666777777777776 555 3444444444677777
Q ss_pred eeccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCc-cccccCCccccCCCCcc-EEEeccCccccc
Q 036588 99 LFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKN-MFYGEIPSDIANCSYLR-ILVLQFNNFSGA 176 (541)
Q Consensus 99 L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~i~~~ 176 (541)
|++++|.++. +|. +..+++|+. |+.|++++| .+....+..|..+++|+ .|++++|.+...
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~----------------L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i 171 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDI----------------FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV 171 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCS----------------EEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE
T ss_pred EeCCCCCCcc-ccc-ccccccccc----------------ccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc
Confidence 7777766653 333 444444431 123555555 55554445566666666 666666666522
Q ss_pred CCccccccCCCcEEEccCce-eeeeccC-CCCc-CCCCEEECCCCcccCCCCcccCCCCCccEEeccC
Q 036588 177 IPKEISNLTKLEKLDLQYNK-LQGTIPY-AGHL-YQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSS 241 (541)
Q Consensus 177 ~~~~l~~l~~L~~L~l~~~~-~~~~~~~-~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 241 (541)
.+..+.. ++|++|++++|. +....+. +..+ ++|+.|++++|.+.. ++.. .+++|+.|.+++
T Consensus 172 ~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~ 235 (239)
T 2xwt_C 172 QGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARN 235 (239)
T ss_dssp CTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTT
T ss_pred CHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccC
Confidence 2222222 566666666663 5544333 4555 566666666655542 2221 344555555544
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=2.8e-19 Score=161.92 Aligned_cols=189 Identities=24% Similarity=0.272 Sum_probs=131.2
Q ss_pred CccccceeeeCCCCCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCC
Q 036588 7 SVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELP 86 (541)
Q Consensus 7 ~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 86 (541)
.|+.|.|-+|.. ..++++++++.++ .+|..+. ++++.|+++++.+++..+..+.++++|++|++++|.+.+ ++
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~ 75 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LS 75 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CC
T ss_pred cCCCCCceEcCC---CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cC
Confidence 477899999853 4678999999998 5666565 689999999999987777788999999999999998854 44
Q ss_pred hhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEE
Q 036588 87 PNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRIL 166 (541)
Q Consensus 87 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 166 (541)
...+.++++|++|++++|.++...+..+..+++|++ |++++|.+....+..+..+++|+.|
T Consensus 76 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~-------------------L~L~~N~l~~~~~~~~~~l~~L~~L 136 (251)
T 3m19_A 76 AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDK-------------------LYLGGNQLKSLPSGVFDRLTKLKEL 136 (251)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE-------------------EECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred HhHhccCCcCCEEECCCCcccccChhHhcccCCCCE-------------------EEcCCCcCCCcChhHhccCCcccEE
Confidence 444444889999999888888666666777777766 4444455554444456666777777
Q ss_pred EeccCcccccCCccccccCCCcEEEccCceeeeeccC-CCCcCCCCEEECCCCccc
Q 036588 167 VLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPY-AGHLYQLQWLDLSDNQLS 221 (541)
Q Consensus 167 ~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~ 221 (541)
++++|.+....+..+..+++|++|++++|.+....+. +..+++|+.|++++|.+.
T Consensus 137 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred ECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 7777766644444566666666666666665544432 445555555555555543
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=1e-19 Score=170.40 Aligned_cols=224 Identities=20% Similarity=0.165 Sum_probs=159.8
Q ss_pred CccEEEeeCCcccccc----ccccccCCCcEEeccCccccCCCCccc--CCCCcceEEEcccCcCcCcCC---hhhhcCC
Q 036588 306 KLEKLDLQYNRLQGTI----LYVGHLLQLQWLDLSDNQLSGSLPSFK--FNMPLLQFLDLSSNRLSVELP---TNVFHNL 376 (541)
Q Consensus 306 ~L~~L~l~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~---~~~~~~~ 376 (541)
.++.+.+.++.+.... ......++|++|++++|.+....+..+ ..+++|++|++++|.+++..+ ...+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 4556666655543211 112334567777777777665555555 677888888888887764333 1233368
Q ss_pred CCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCc--c--chhhhccCCCcEEEccccccccccCC----CcccC
Q 036588 377 PFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGA--I--PKEISNLTKLEKLDLQYNRLQGTIPY----AGHLF 448 (541)
Q Consensus 377 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~--~~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~ 448 (541)
++|++|++++|.+....+..+..+++|++|++++|++... . ...+..+++|++|++++|++...... +..++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 8899999998888766677788888999999998886531 1 12346788899999999888633321 35678
Q ss_pred CcceEeccCCcCCCCCCccccCC---CCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCccccce
Q 036588 449 QLQWLDLSDNQLSGSLPSFKFKM---PLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRI 525 (541)
Q Consensus 449 ~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 525 (541)
+|+.|++++|.+....|..+..+ ++|++|++++|.+. .+|... . ++|+.|++++|++.+. |. +..+++|+.
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~-~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~ 298 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL-P--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN 298 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC-C--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh-c--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence 89999999999887766666665 79999999999985 577433 2 7999999999999853 33 678899999
Q ss_pred EEeecccccc
Q 036588 526 LVVQFNNFSG 535 (541)
Q Consensus 526 L~l~~~~~~~ 535 (541)
|++++|+++.
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 9999999874
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.81 E-value=9.4e-19 Score=161.55 Aligned_cols=176 Identities=31% Similarity=0.278 Sum_probs=77.3
Q ss_pred cccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEccc
Q 036588 282 YLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSS 361 (541)
Q Consensus 282 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 361 (541)
+++.|++++|.+....+..+..+++|+.|++++|.+..... ...+++|++|++++|.+. .++..+..+++|+.|++++
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~ 109 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF 109 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCS
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCC
Confidence 44445555444443333444445555555555544432221 134444444444444443 2233334444444444444
Q ss_pred CcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEcccccccccc
Q 036588 362 NRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTI 441 (541)
Q Consensus 362 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 441 (541)
|.++ .++...|..+++|+.|++++|++....+..|..+++|+.|++++|++....+..|..+++|+.|++++|++....
T Consensus 110 N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip 188 (290)
T 1p9a_G 110 NRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188 (290)
T ss_dssp SCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccC
Confidence 4443 333333444444444444444444333333444444444444444444433334444444444444444444332
Q ss_pred CCCcccCCcceEeccCCcC
Q 036588 442 PYAGHLFQLQWLDLSDNQL 460 (541)
Q Consensus 442 ~~~~~~~~L~~L~l~~~~~ 460 (541)
..+...++|+.+++++|++
T Consensus 189 ~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 189 KGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTTTTTCCCSEEECCSCCB
T ss_pred hhhcccccCCeEEeCCCCc
Confidence 2333334444444444443
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.81 E-value=9.8e-21 Score=181.38 Aligned_cols=252 Identities=19% Similarity=0.181 Sum_probs=152.0
Q ss_pred EEEecCCcceeeeCCcccCCCCCcEecccccccCCccc----hhhhhcC-CCcEEEeecCccCCCCChhhhhhc-----C
Q 036588 25 ALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIP----ASIFNMS-SLLSINFINNALFGELPPNFCNHL-----S 94 (541)
Q Consensus 25 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~l-----~ 94 (541)
..+++.+++++.+|+.+...++|++|++++|.+++..+ ..+.+++ +|++|++++|.+.+..+..+.. + +
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~-~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ-ILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHH-HHHTSCT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHH-HHhccCC
Confidence 35778888888777777777779999999988885555 6777788 8999999998886665655555 4 8
Q ss_pred CCcEeeccccccCccCCccC----CCC-CCCcEEecCCCccccccccCcceEEEecCccccccCCcc----ccC-CCCcc
Q 036588 95 NLESLFLKSNMFHGKIPSTL----SSC-KRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSD----IAN-CSYLR 164 (541)
Q Consensus 95 ~L~~L~l~~~~~~~~~~~~~----~~l-~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~-~~~L~ 164 (541)
+|++|++++|.++...+..+ ..+ ++|++|++++|. +.+..+.. +.. +++|+
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-------------------l~~~~~~~l~~~l~~~~~~L~ 141 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-------------------FSSKSSSEFKQAFSNLPASIT 141 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-------------------GGGSCHHHHHHHHTTSCTTCC
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-------------------CCcHHHHHHHHHHHhCCCcee
Confidence 88899998888876555433 333 566665555444 43332222 222 24555
Q ss_pred EEEeccCcccccCCccc----cccC-CCcEEEccCceeeeecc-----CCCCc-CCCCEEECCCCcccCC----CCcccC
Q 036588 165 ILVLQFNNFSGAIPKEI----SNLT-KLEKLDLQYNKLQGTIP-----YAGHL-YQLQWLDLSDNQLSGS----LPSFKF 229 (541)
Q Consensus 165 ~L~l~~~~i~~~~~~~l----~~l~-~L~~L~l~~~~~~~~~~-----~~~~~-~~L~~L~l~~~~~~~~----~~~~~~ 229 (541)
+|++++|.+.+.....+ ..++ +|++|++++|.+.+... .+..+ ++|+.|++++|.+... ++..+.
T Consensus 142 ~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~ 221 (362)
T 3goz_A 142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS 221 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred EEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence 55555555553322222 2233 56666666555543222 12233 3666666666665532 122222
Q ss_pred C-CCCccEEeccCCcccCcCC---hhhhccCCCCcEEEecCccccc-------cCCCCCcCcccccEEEecccccCCC
Q 036588 230 K-MPLLQFLDLSSNRLSAELP---TNVFHNLPFLEELYLSNNMFYG-------EIPSDTANCSYLRILVLRFNNFSGA 296 (541)
Q Consensus 230 ~-~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~-------~~~~~~~~~~~L~~L~l~~~~~~~~ 296 (541)
. .++|++|++++|.+.+... ...+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.+...
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 2 3466777777766643222 1234556777777777776332 2334566778888888888887654
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.80 E-value=1.9e-18 Score=156.44 Aligned_cols=178 Identities=28% Similarity=0.239 Sum_probs=108.1
Q ss_pred CCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEE
Q 036588 328 LQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILV 407 (541)
Q Consensus 328 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 407 (541)
...++++++++.+.. ++..+ .+.++.|++++|.++ .+....+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 14 ~~~~~l~~~~~~l~~-~p~~~--~~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLDS-VPSGI--PADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCSS-CCSCC--CTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCccc-cCCCC--CCCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 345667777666653 22222 246677777777665 34444555667777777777766655555566666777777
Q ss_pred cccCCCCCccchhhhccCCCcEEEccccccccccCC-CcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCcccc
Q 036588 408 LKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLST 486 (541)
Q Consensus 408 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 486 (541)
+++|.+....+..|..+++|+.|++++|++....+. +..+++|+.|++++|.+....+..+..+++|++|++++|.+.+
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 777766665556666666666666666666544443 3556666666666666664444455666666666666666633
Q ss_pred ccCcccccCCcccceeeeccceec
Q 036588 487 ELPTNVFHNLPFLEELYLSNNMFY 510 (541)
Q Consensus 487 ~~~~~~~~~~~~L~~L~l~~~~~~ 510 (541)
++...+..+++|+.|++++|++.
T Consensus 170 -~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 170 -VPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp -CCTTTTTTCTTCCEEECCSCCBC
T ss_pred -cCHHHHhCCCCCCEEEeeCCcee
Confidence 44345556666666666666665
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.79 E-value=9.6e-19 Score=163.20 Aligned_cols=195 Identities=24% Similarity=0.284 Sum_probs=155.5
Q ss_pred ccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCcc
Q 036588 301 ISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLE 380 (541)
Q Consensus 301 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 380 (541)
...+++|+.|+++++.+... +.+..+++|++|++++|.+....+ +..+++|+.|++++|.+++ ++ .+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~--~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS--AIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG--GGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccCc-hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch--hhcCCCCCC
Confidence 45678999999999988754 468888999999999998875443 7788999999999998863 33 466889999
Q ss_pred EEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcC
Q 036588 381 ELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQL 460 (541)
Q Consensus 381 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 460 (541)
.|++++|.+.+. ..+..+++|++|++++|.+....+ +..+++|+.|++++|.+....+ +..+++|+.|++++|.+
T Consensus 111 ~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 111 TLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred EEECCCCCCCCc--hhhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCcc
Confidence 999999988643 247888999999999998875543 7888999999999998875444 77888899999999988
Q ss_pred CCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecc
Q 036588 461 SGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYG 511 (541)
Q Consensus 461 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 511 (541)
....+ +..+++|++|++++|++.+ ++ .+..+++|+.|++++|++.+
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~-~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISD-VS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCB-CG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CcChh--hcCCCCCCEEEccCCccCc-cc--cccCCCCCCEEEccCCeeec
Confidence 75433 6788899999999998854 43 36788899999999999874
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.79 E-value=3.5e-21 Score=186.48 Aligned_cols=260 Identities=20% Similarity=0.133 Sum_probs=142.5
Q ss_pred CeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchh----hhhcCCCcEEEeecCcc---CCCCChhh-----
Q 036588 22 RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPAS----IFNMSSLLSINFINNAL---FGELPPNF----- 89 (541)
Q Consensus 22 ~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~---~~~~~~~~----- 89 (541)
.++...+....+. .++..+..+++|++|++++|.+++..+.. +.++++|++|++++|.+ .+.+|..+
T Consensus 10 ~L~~~~l~~~~~~-~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~ 88 (386)
T 2ca6_A 10 SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ 88 (386)
T ss_dssp CCEESSCCSHHHH-TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHH
T ss_pred ccccCCCCHHHHH-HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHH
Confidence 3444444444444 45666778888888888888877554433 56788888888887643 23344444
Q ss_pred -hhhcCCCcEeeccccccCc----cCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCC----
Q 036588 90 -CNHLSNLESLFLKSNMFHG----KIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANC---- 160 (541)
Q Consensus 90 -~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---- 160 (541)
+..+++|++|++++|.+.. .++..+.++++|++|++++|.+..... ..++..+..+
T Consensus 89 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~---------------~~l~~~l~~l~~~~ 153 (386)
T 2ca6_A 89 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG---------------AKIARALQELAVNK 153 (386)
T ss_dssp HHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH---------------HHHHHHHHHHHHHH
T ss_pred HHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH---------------HHHHHHHHHHhhhh
Confidence 1347888888888888775 345566777777776666555420000 0011111122
Q ss_pred -----CCccEEEeccCcccc-cCC---ccccccCCCcEEEccCceeee-----ecc-CCCCcCCCCEEECCCCccc----
Q 036588 161 -----SYLRILVLQFNNFSG-AIP---KEISNLTKLEKLDLQYNKLQG-----TIP-YAGHLYQLQWLDLSDNQLS---- 221 (541)
Q Consensus 161 -----~~L~~L~l~~~~i~~-~~~---~~l~~l~~L~~L~l~~~~~~~-----~~~-~~~~~~~L~~L~l~~~~~~---- 221 (541)
++|++|++++|.+.+ ..+ ..+..+++|++|++++|.+.. ..+ .+..+++|+.|++++|.+.
T Consensus 154 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~ 233 (386)
T 2ca6_A 154 KAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS 233 (386)
T ss_dssp HHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH
T ss_pred hcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHH
Confidence 555555555555442 111 234445555555555555441 122 3455556666666665553
Q ss_pred CCCCcccCCCCCccEEeccCCcccCcCCh---hhh--ccCCCCcEEEecCccccc----cCCCCC-cCcccccEEEeccc
Q 036588 222 GSLPSFKFKMPLLQFLDLSSNRLSAELPT---NVF--HNLPFLEELYLSNNMFYG----EIPSDT-ANCSYLRILVLRFN 291 (541)
Q Consensus 222 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~--~~~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~L~l~~~ 291 (541)
..++..+..+++|++|++++|.+...... ..+ ..+++|+.|++++|.+.. ..+..+ ..+++|++|++++|
T Consensus 234 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 234 SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp HHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred HHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 23344455566666666666655322111 112 225666666666666654 244444 34567777777777
Q ss_pred ccCCCc
Q 036588 292 NFSGAI 297 (541)
Q Consensus 292 ~~~~~~ 297 (541)
.+....
T Consensus 314 ~l~~~~ 319 (386)
T 2ca6_A 314 RFSEED 319 (386)
T ss_dssp BSCTTS
T ss_pred cCCcch
Confidence 666443
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.79 E-value=9.8e-19 Score=157.16 Aligned_cols=154 Identities=17% Similarity=0.143 Sum_probs=74.5
Q ss_pred cccCCCCccEEEecc-CcccccCCccccccCCCcEEEccCceeeeeccCCCCcCCCC---EEECCCC-cccCCCCcccCC
Q 036588 156 DIANCSYLRILVLQF-NNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQ---WLDLSDN-QLSGSLPSFKFK 230 (541)
Q Consensus 156 ~~~~~~~L~~L~l~~-~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~ 230 (541)
.|..+++|++|++++ +.+....+..+..+++|++|++++|.+.... .+..+++|+ .|++++| .+....+..+..
T Consensus 75 ~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~ 153 (239)
T 2xwt_C 75 SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFP-DLTKVYSTDIFFILEITDNPYMTSIPVNAFQG 153 (239)
T ss_dssp TEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCC-CCTTCCBCCSEEEEEEESCTTCCEECTTTTTT
T ss_pred HcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcccc-ccccccccccccEEECCCCcchhhcCcccccc
Confidence 344444444444444 4444333333444444444444444443322 133344444 5555554 444333334445
Q ss_pred CCCcc-EEeccCCcccCcCChhhhccCCCCcEEEecCcc-ccccCCCCCcCc-ccccEEEecccccCCCccccccccCCc
Q 036588 231 MPLLQ-FLDLSSNRLSAELPTNVFHNLPFLEELYLSNNM-FYGEIPSDTANC-SYLRILVLRFNNFSGAIPKEISNLTKL 307 (541)
Q Consensus 231 ~~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~l~~L 307 (541)
+++|+ .+++++|.+. .++...|.. ++|+.|++++|. +....+..|..+ ++|+.|++++|.+...... .+++|
T Consensus 154 l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L 228 (239)
T 2xwt_C 154 LCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHL 228 (239)
T ss_dssp TBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTC
T ss_pred hhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccC
Confidence 55555 5555555553 444444444 556666666663 554455556666 6666666666665532221 45566
Q ss_pred cEEEeeCC
Q 036588 308 EKLDLQYN 315 (541)
Q Consensus 308 ~~L~l~~~ 315 (541)
+.|++.++
T Consensus 229 ~~L~l~~~ 236 (239)
T 2xwt_C 229 KELIARNT 236 (239)
T ss_dssp SEEECTTC
T ss_pred ceeeccCc
Confidence 66665544
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.79 E-value=1.5e-18 Score=161.97 Aligned_cols=195 Identities=22% Similarity=0.249 Sum_probs=165.1
Q ss_pred CcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceE
Q 036588 277 TANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQF 356 (541)
Q Consensus 277 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 356 (541)
...+++|++|+++++.+... + .+..+++|+.|++++|.+..... +..+++|++|++++|.+... ..+..+++|+.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 45678999999999988753 3 57889999999999999886655 88999999999999998753 36788999999
Q ss_pred EEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccc
Q 036588 357 LDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNR 436 (541)
Q Consensus 357 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 436 (541)
|++++|.+++ ++. +..+++|+.|++++|.+.+.. .+..+++|++|++++|.+....+ +..+++|+.|++++|.
T Consensus 112 L~l~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 112 LDLTSTQITD-VTP--LAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184 (308)
T ss_dssp EECTTSCCCC-CGG--GTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EECCCCCCCC-chh--hcCCCCCCEEECCCCccCcCc--cccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence 9999999873 433 678999999999999986432 38899999999999999986544 8899999999999999
Q ss_pred cccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCcccc
Q 036588 437 LQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLST 486 (541)
Q Consensus 437 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 486 (541)
+....+ +..+++|+.|++++|.+.... .+..+++|+.|++++|++.+
T Consensus 185 l~~~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 ISDISP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred cCcChh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 875443 788999999999999998544 37889999999999999844
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=5.3e-19 Score=165.51 Aligned_cols=221 Identities=19% Similarity=0.145 Sum_probs=175.7
Q ss_pred CCeEEEEecCCcceeee-CC--cccCCCCCcEecccccccCCccchhh--hhcCCCcEEEeecCccCCCCC----hhhhh
Q 036588 21 YRVTALNISGLNLTVTI-PS--ELGNLSSLQTLDLSFNWFSGSIPASI--FNMSSLLSINFINNALFGELP----PNFCN 91 (541)
Q Consensus 21 ~~l~~L~l~~~~i~~~~-~~--~~~~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~~ 91 (541)
..++.+.+.++.++... .. .+..+++|++|++++|.+.+..|..+ .++++|++|++++|.+.+..+ ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~- 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW- 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-
Confidence 35788888888876321 11 12345679999999999988888888 889999999999999865544 3334
Q ss_pred hcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCccc---------cccccCcceEEEecCccccccCC--c-cccC
Q 036588 92 HLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFF---------WDHTKRNWQQLYLSKNMFYGEIP--S-DIAN 159 (541)
Q Consensus 92 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~---------~~~~~~~L~~L~l~~~~~~~~~~--~-~~~~ 159 (541)
.+++|++|++++|.+....+..++.+++|++|++++|.+. .....++|++|++++|.+..... . .+..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 4899999999999998888889999999999999999753 22467889999999998863211 1 2577
Q ss_pred CCCccEEEeccCcccccCCcccccc---CCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCCCCccE
Q 036588 160 CSYLRILVLQFNNFSGAIPKEISNL---TKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQF 236 (541)
Q Consensus 160 ~~~L~~L~l~~~~i~~~~~~~l~~l---~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 236 (541)
+++|++|++++|.+.+..|..+..+ ++|++|++++|.++..+..+. ++|+.|++++|.+.+. +. +..+++|+.
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~ 298 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN 298 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence 8999999999999997777777776 699999999999986655453 8999999999999853 33 677899999
Q ss_pred EeccCCcccC
Q 036588 237 LDLSSNRLSA 246 (541)
Q Consensus 237 L~l~~~~~~~ 246 (541)
|++++|.+.+
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 9999998753
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.78 E-value=4.1e-20 Score=177.07 Aligned_cols=225 Identities=19% Similarity=0.157 Sum_probs=138.5
Q ss_pred EecccccccCCccchhhhhcCCCcEEEeecCccCCCCCh---hhhhhcC-CCcEeeccccccCccCCccCCCC-----CC
Q 036588 49 TLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPP---NFCNHLS-NLESLFLKSNMFHGKIPSTLSSC-----KR 119 (541)
Q Consensus 49 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~ 119 (541)
+++++.+.+++.+|..+...++|++|++++|.+.+..+. ..+.+++ +|++|++++|.+....+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 567888888877777777777799999999988544442 3333377 89999999998886666555543 55
Q ss_pred CcEEecCCCccccccccCcceEEEecCccccccCCcc----ccCC-CCccEEEeccCcccccCCccccc-----cCCCcE
Q 036588 120 LRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSD----IANC-SYLRILVLQFNNFSGAIPKEISN-----LTKLEK 189 (541)
Q Consensus 120 L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~i~~~~~~~l~~-----l~~L~~ 189 (541)
|++ |++++|.+.+..+.. +..+ ++|+.|++++|.+.+..+..++. .++|++
T Consensus 82 L~~-------------------L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 142 (362)
T 3goz_A 82 VTS-------------------LNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS 142 (362)
T ss_dssp CCE-------------------EECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCE
T ss_pred ccE-------------------EECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeE
Confidence 555 666666666544433 3444 78888888888887665554443 258888
Q ss_pred EEccCceeeeec-----cCCCCcC-CCCEEECCCCcccCCCCc----ccCCC-CCccEEeccCCcccCcC----Chhhhc
Q 036588 190 LDLQYNKLQGTI-----PYAGHLY-QLQWLDLSDNQLSGSLPS----FKFKM-PLLQFLDLSSNRLSAEL----PTNVFH 254 (541)
Q Consensus 190 L~l~~~~~~~~~-----~~~~~~~-~L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~~----~~~~~~ 254 (541)
|++++|.+.+.. ..+...+ +|++|++++|.+....+. .+..+ ++|++|++++|.+.+.. +..+..
T Consensus 143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 888888776322 1123343 777777777777644432 22334 47777777777664321 112212
Q ss_pred cCCCCcEEEecCccccccCC----CCCcCcccccEEEecccc
Q 036588 255 NLPFLEELYLSNNMFYGEIP----SDTANCSYLRILVLRFNN 292 (541)
Q Consensus 255 ~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~ 292 (541)
..++|++|++++|.+....+ ..+..+++|+.|++++|.
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 23466666666665543222 223444556666665555
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.78 E-value=7.6e-21 Score=184.12 Aligned_cols=242 Identities=20% Similarity=0.153 Sum_probs=114.7
Q ss_pred CCCCCcCcccccEEEecccccCCCcc----ccccccCCccEEEeeCCcccccc---c-c-------ccccCCCcEEeccC
Q 036588 273 IPSDTANCSYLRILVLRFNNFSGAIP----KEISNLTKLEKLDLQYNRLQGTI---L-Y-------VGHLLQLQWLDLSD 337 (541)
Q Consensus 273 ~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~---~-~-------~~~~~~L~~L~l~~ 337 (541)
.+..+..+++|++|++++|.+....+ ..+..+++|+.|++++|.+.... + . +..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 34445566777777777776654422 23556677777777766433211 1 1 23455555555555
Q ss_pred ccccC----CCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCC---------ccCC
Q 036588 338 NQLSG----SLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNC---------SYLR 404 (541)
Q Consensus 338 ~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---------~~L~ 404 (541)
|.+.. .++..+..+++|++|++++|.++...+... +..+..+ ++|+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l---------------------~~~l~~l~~~~~~~~~~~L~ 162 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI---------------------ARALQELAVNKKAKNAPPLR 162 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHH---------------------HHHHHHHHHHHHHHTCCCCC
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHH---------------------HHHHHHHhhhhhcccCCCCc
Confidence 55443 122233444555555555554431111111 0111111 4555
Q ss_pred eEEcccCCCCC-ccc---hhhhccCCCcEEEcccccccc-----ccC-CCcccCCcceEeccCCcCC----CCCCccccC
Q 036588 405 ILVLKFNNFPG-AIP---KEISNLTKLEKLDLQYNRLQG-----TIP-YAGHLFQLQWLDLSDNQLS----GSLPSFKFK 470 (541)
Q Consensus 405 ~L~l~~~~~~~-~~~---~~l~~~~~L~~L~l~~~~~~~-----~~~-~~~~~~~L~~L~l~~~~~~----~~~~~~~~~ 470 (541)
+|++++|++.. ..+ ..+..+++|++|++++|.+.. ..+ .+..+++|+.|++++|.+. ..++..+..
T Consensus 163 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~ 242 (386)
T 2ca6_A 163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242 (386)
T ss_dssp EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG
T ss_pred EEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc
Confidence 55555555442 111 234445555555555555441 122 3444555555555555543 233444455
Q ss_pred CCCccEeeCCCCccccc----cCcccc--cCCcccceeeeccceecc----cCCCCC-CCccccceEEeeccccccc
Q 036588 471 MPLLQFLDLSSNRLSTE----LPTNVF--HNLPFLEELYLSNNMFYG----EIPSDT-PNCSYLRILVVQFNNFSGA 536 (541)
Q Consensus 471 ~~~L~~L~l~~~~~~~~----~~~~~~--~~~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~L~l~~~~~~~~ 536 (541)
+++|++|++++|.+.+. ++ ..+ ..+++|+.|++++|.+.+ .++..+ .++++|+.|++++|++.+.
T Consensus 243 ~~~L~~L~L~~n~i~~~~~~~l~-~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 243 WPNLRELGLNDCLLSARGAAAVV-DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp CTTCCEEECTTCCCCHHHHHHHH-HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred CCCcCEEECCCCCCchhhHHHHH-HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 55555555555555332 11 122 125555555555555554 244444 3355555555555555543
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.75 E-value=1.3e-17 Score=146.24 Aligned_cols=193 Identities=24% Similarity=0.202 Sum_probs=148.6
Q ss_pred cEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEccc
Q 036588 331 QWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKF 410 (541)
Q Consensus 331 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 410 (541)
+.++.+++.+... +.. -.+++++|++++|.++ .++...+..+++|++|++.+|.+....+..|..+++|++|++++
T Consensus 10 ~~v~c~~~~l~~~-p~~--~~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTSV-PTG--IPAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSSC-CSC--CCTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccCC-CCC--CCCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 4566666666533 222 2468899999999887 66666777889999999999988765556678889999999999
Q ss_pred CCCCCccchhhhccCCCcEEEccccccccccCC-CcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccC
Q 036588 411 NNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELP 489 (541)
Q Consensus 411 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 489 (541)
|.+....+..+..+++|+.|++++|.+....+. +..+++|+.|++++|.+....+..+..+++|++|++++|++.+
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--- 162 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--- 162 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec---
Confidence 988877777788889999999999988765554 5778889999999988886666667888899999998887633
Q ss_pred cccccCCcccceeeeccceecccCCCCCCCccccceEEeecccccccCCC
Q 036588 490 TNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSGAIPK 539 (541)
Q Consensus 490 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~ 539 (541)
.+++|+.|+++.|.+.+.+|+.+..++. ++..|...+..+.
T Consensus 163 -----~~~~l~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~~~~~~ 203 (208)
T 2o6s_A 163 -----TCPGIRYLSEWINKHSGVVRNSAGSVAP----DSAKCSGSGKPVR 203 (208)
T ss_dssp -----CTTTTHHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTTCCBGG
T ss_pred -----CCCCHHHHHHHHHhCCceeeccCccccC----CccccccCCCcce
Confidence 4568888888888888888888887765 5666665554443
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.75 E-value=3.5e-17 Score=155.82 Aligned_cols=169 Identities=18% Similarity=0.103 Sum_probs=90.6
Q ss_pred EEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcE-eecccc
Q 036588 26 LNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLES-LFLKSN 104 (541)
Q Consensus 26 L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~-L~l~~~ 104 (541)
++-++++++ .+|..+ .+++++|+|++|.++...+.+|.++++|++|++++|.+.+.+|...+.++++++. +.+..+
T Consensus 14 v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 14 FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp EEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred EEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 333455566 445544 3567888888888773333467778888888888777766666666655777664 344556
Q ss_pred ccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEecc-CcccccCCccccc
Q 036588 105 MFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQF-NNFSGAIPKEISN 183 (541)
Q Consensus 105 ~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~i~~~~~~~l~~ 183 (541)
+++...+..|..+++|++ |++++|.+....+..+....++..+++.+ +.+....+..+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~-------------------L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~ 151 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQY-------------------LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151 (350)
T ss_dssp TCCEECTTSBCCCTTCCE-------------------EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTT
T ss_pred cccccCchhhhhcccccc-------------------ccccccccccCCchhhcccchhhhhhhccccccccccccchhh
Confidence 666555666666666666 33334444433333333444455555543 2333222223333
Q ss_pred cC-CCcEEEccCceeeeeccCCCCcCCCCEEECC
Q 036588 184 LT-KLEKLDLQYNKLQGTIPYAGHLYQLQWLDLS 216 (541)
Q Consensus 184 l~-~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 216 (541)
+. .++.|++++|.++.+........+|+.+.+.
T Consensus 152 ~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~ 185 (350)
T 4ay9_X 152 LSFESVILWLNKNGIQEIHNSAFNGTQLDELNLS 185 (350)
T ss_dssp SBSSCEEEECCSSCCCEECTTSSTTEEEEEEECT
T ss_pred cchhhhhhccccccccCCChhhccccchhHHhhc
Confidence 32 3444555555544443333333444444443
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.74 E-value=2.9e-17 Score=144.09 Aligned_cols=156 Identities=27% Similarity=0.254 Sum_probs=93.6
Q ss_pred CCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCC-CcccCCcceEec
Q 036588 377 PFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDL 455 (541)
Q Consensus 377 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l 455 (541)
++|++|++.+|.+.+..+..+..+++|++|++++|++....+..|..+++|++|++++|.+....+. +..+++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 4566666666666544444456666666666666666655555556666666666666666544333 455666666666
Q ss_pred cCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeecccccc
Q 036588 456 SDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNFSG 535 (541)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 535 (541)
++|.+....+..+..+++|++|++++|.+. .++...+..+++|+.|++++|++.+ .++.|+.|+++.|.++|
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCc
Confidence 666666544445566666666666666663 3443445566666666666665542 24556666666666666
Q ss_pred cCCCC
Q 036588 536 AIPKE 540 (541)
Q Consensus 536 ~~p~~ 540 (541)
.+|++
T Consensus 180 ~ip~~ 184 (208)
T 2o6s_A 180 VVRNS 184 (208)
T ss_dssp TBBCT
T ss_pred eeecc
Confidence 66654
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.73 E-value=6.5e-17 Score=153.93 Aligned_cols=239 Identities=20% Similarity=0.163 Sum_probs=182.5
Q ss_pred cEEEecccccCCCccccccccCCccEEEeeCCcccccccc-ccccCCCcEEeccCccccCCC-CcccCCCCcceEE-Ecc
Q 036588 284 RILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILY-VGHLLQLQWLDLSDNQLSGSL-PSFKFNMPLLQFL-DLS 360 (541)
Q Consensus 284 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L-~l~ 360 (541)
+.++.++++++ .+|..+ .+++++|++++|.+...... +..+++|++|++++|.+...+ ...|.+++++.++ .+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56777777777 455544 36899999999999876653 889999999999999876543 4567788888764 555
Q ss_pred cCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEccc-CCCCCccchhhhcc-CCCcEEEccccccc
Q 036588 361 SNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKF-NNFPGAIPKEISNL-TKLEKLDLQYNRLQ 438 (541)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~-~~L~~L~l~~~~~~ 438 (541)
+|.++ .++...|..+++|+++++.+|++....+..+.....+..+++.+ +.+.......|..+ ..++.|++++|++.
T Consensus 89 ~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 89 ANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 67776 67777888999999999999998766555666777788888865 46665666667765 46899999999998
Q ss_pred cccCCCcccCCcceEeccC-CcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCC
Q 036588 439 GTIPYAGHLFQLQWLDLSD-NQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDT 517 (541)
Q Consensus 439 ~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 517 (541)
...+......+|+.+.+.+ +.+....+.++..+++|++|++++|++ +.+|...+. +|+.|.+.++.....+| .+
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l-~~lp~~~~~---~L~~L~~l~~~~l~~lP-~l 242 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI-HSLPSYGLE---NLKKLRARSTYNLKKLP-TL 242 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCC-CCCCSSSCT---TCCEEECTTCTTCCCCC-CT
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCc-CccChhhhc---cchHhhhccCCCcCcCC-Cc
Confidence 7666666778899999986 456645556788999999999999998 557766555 45555555555554666 58
Q ss_pred CCccccceEEeecc
Q 036588 518 PNCSYLRILVVQFN 531 (541)
Q Consensus 518 ~~~~~L~~L~l~~~ 531 (541)
..+++|+.+++.++
T Consensus 243 ~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 243 EKLVALMEASLTYP 256 (350)
T ss_dssp TTCCSCCEEECSCH
T ss_pred hhCcChhhCcCCCC
Confidence 88999999998753
No 99
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.71 E-value=6.8e-16 Score=149.46 Aligned_cols=335 Identities=16% Similarity=0.076 Sum_probs=168.7
Q ss_pred cceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccccccCccCC
Q 036588 32 NLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIP 111 (541)
Q Consensus 32 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 111 (541)
+++.+-..+|.+|++|+.+.+..+ ++.....+|.++.+|+.++++++- +.++...+.+|++|+.+.++.+ +.....
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~l--~~I~~~aF~~c~~L~~i~~p~~-l~~i~~ 133 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDSV--KMIGRCTFSGCYALKSILLPLM-LKSIGV 133 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTTC--CEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred eEeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCCc--eEccchhhcccccchhhcccCc-eeeecc
Confidence 345555566777777777777543 443445667777777777776542 3445555555667766665533 333444
Q ss_pred ccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEE
Q 036588 112 STLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLD 191 (541)
Q Consensus 112 ~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~ 191 (541)
..|..+..++.... .....+....|..|++|+.+.+..+. .......|..+.+|+.+.
T Consensus 134 ~aF~~~~~~~~~~~---------------------~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~ 191 (394)
T 4fs7_A 134 EAFKGCDFKEITIP---------------------EGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIK 191 (394)
T ss_dssp TTTTTCCCSEEECC---------------------TTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCC
T ss_pred eeeecccccccccC---------------------ccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEE
Confidence 44544433222111 11112334467777777777776542 224445666677777777
Q ss_pred ccCceeeeecc-CCCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCcccc
Q 036588 192 LQYNKLQGTIP-YAGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFY 270 (541)
Q Consensus 192 l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 270 (541)
+..+ +..... .+..+..|+.+.+..+.. ..........+|+.+.+.... ..+....|..+..++.+.+..+..
T Consensus 192 l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~--~i~~~~~~~~~l~~i~ip~~~--~~i~~~~f~~~~~l~~~~~~~~~~- 265 (394)
T 4fs7_A 192 LPRN-LKIIRDYCFAECILLENMEFPNSLY--YLGDFALSKTGVKNIIIPDSF--TELGKSVFYGCTDLESISIQNNKL- 265 (394)
T ss_dssp CCTT-CCEECTTTTTTCTTCCBCCCCTTCC--EECTTTTTTCCCCEEEECTTC--CEECSSTTTTCSSCCEEEECCTTC-
T ss_pred cCCC-ceEeCchhhccccccceeecCCCce--EeehhhcccCCCceEEECCCc--eecccccccccccceeEEcCCCcc-
Confidence 6654 222222 245555566555543321 112223334455555554322 123334445555555555544322
Q ss_pred ccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCC
Q 036588 271 GEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFN 350 (541)
Q Consensus 271 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 350 (541)
......|..+..++.+......+. ... +..+.+|+.+.+.++ +..+...+|.+
T Consensus 266 ~i~~~~F~~~~~l~~~~~~~~~i~---~~~-----------------------F~~~~~L~~i~l~~~-i~~I~~~aF~~ 318 (394)
T 4fs7_A 266 RIGGSLFYNCSGLKKVIYGSVIVP---EKT-----------------------FYGCSSLTEVKLLDS-VKFIGEEAFES 318 (394)
T ss_dssp EECSCTTTTCTTCCEEEECSSEEC---TTT-----------------------TTTCTTCCEEEECTT-CCEECTTTTTT
T ss_pred eeeccccccccccceeccCceeec---ccc-----------------------ccccccccccccccc-cceechhhhcC
Confidence 233444555555555444333221 112 334444444444332 22233445555
Q ss_pred CCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEE
Q 036588 351 MPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKL 430 (541)
Q Consensus 351 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 430 (541)
|.+|+.+.+..+ ++ .+...+|.+|.+|+.+.+..+ +......+|.+|++|+.+++..+ +. ....+|.+|++|+.+
T Consensus 319 c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 319 CTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 666666666533 32 455556666666666666554 33344456667777777766543 11 122356666666654
No 100
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.71 E-value=1.4e-16 Score=141.53 Aligned_cols=161 Identities=22% Similarity=0.255 Sum_probs=97.7
Q ss_pred CCCCCCCccccceeeeCCCCCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCc
Q 036588 1 NWNTSSSVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNA 80 (541)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 80 (541)
.|..+...|.|.++.|... .++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.
T Consensus 11 ~~~~~~~~Cs~~~v~c~~~------------~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~ 75 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCRSK------------RHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ 75 (229)
T ss_dssp CCCCTTCEEETTEEECTTS------------CCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCCCEEeCCEeEccCC------------CcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC
Confidence 3778889999999988642 233 3343332 677777777777776667777777777777777777
Q ss_pred cCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCC
Q 036588 81 LFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANC 160 (541)
Q Consensus 81 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 160 (541)
+ +.+|...+.++++|++|++++|+++...+..+..+++|++|++ ++|.+. .+|..+..+
T Consensus 76 l-~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L-------------------s~N~l~-~lp~~~~~l 134 (229)
T 3e6j_A 76 L-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM-------------------CCNKLT-ELPRGIERL 134 (229)
T ss_dssp C-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC-------------------CSSCCC-SCCTTGGGC
T ss_pred C-CCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec-------------------cCCccc-ccCcccccC
Confidence 6 4555555555777777777777776555555566666555333 333333 234444555
Q ss_pred CCccEEEeccCcccccCCccccccCCCcEEEccCcee
Q 036588 161 SYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKL 197 (541)
Q Consensus 161 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~ 197 (541)
++|+.|++++|.+....+..+..+++|+.|++.+|.+
T Consensus 135 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 135 THLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred CCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 5555555555555533333445555555555555443
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.70 E-value=3.5e-17 Score=163.68 Aligned_cols=199 Identities=21% Similarity=0.310 Sum_probs=134.5
Q ss_pred CCCCCCcc-----cccee-eeCCCCCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEE
Q 036588 2 WNTSSSVC-----NWTGI-TCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSIN 75 (541)
Q Consensus 2 ~~~~~~~~-----~~~~~-~~~~~~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 75 (541)
|.....+| .|.++ .|.. .++++|+++++++++ +|..+ +++|++|++++|.++ .+| ..+++|++|+
T Consensus 36 W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~ 106 (571)
T 3cvr_A 36 WEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLD 106 (571)
T ss_dssp HHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEE
T ss_pred HhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEE
Confidence 66666777 78888 6763 489999999999996 66655 388999999999998 777 4578999999
Q ss_pred eecCccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCc
Q 036588 76 FINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPS 155 (541)
Q Consensus 76 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 155 (541)
+++|.+. .+|. +. .+|++|++++|.++. +|. .+++|++ |++++|.+.. ++.
T Consensus 107 Ls~N~l~-~ip~-l~---~~L~~L~Ls~N~l~~-lp~---~l~~L~~-------------------L~Ls~N~l~~-lp~ 157 (571)
T 3cvr_A 107 ACDNRLS-TLPE-LP---ASLKHLDVDNNQLTM-LPE---LPALLEY-------------------INADNNQLTM-LPE 157 (571)
T ss_dssp CCSSCCS-CCCC-CC---TTCCEEECCSSCCSC-CCC---CCTTCCE-------------------EECCSSCCSC-CCC
T ss_pred ccCCCCC-Ccch-hh---cCCCEEECCCCcCCC-CCC---cCccccE-------------------EeCCCCccCc-CCC
Confidence 9999885 4777 43 389999999998875 444 4566666 4444555443 232
Q ss_pred cccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceeeeeccCCCCcCCC-------CEEECCCCcccCCCCccc
Q 036588 156 DIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQL-------QWLDLSDNQLSGSLPSFK 228 (541)
Q Consensus 156 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~ 228 (541)
.+++|+.|++++|.+.. +|. +. ++|+.|++++|.++..+. +.. +| +.|++++|.+. .+|..+
T Consensus 158 ---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l 226 (571)
T 3cvr_A 158 ---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENI 226 (571)
T ss_dssp ---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCC-CCCGGG
T ss_pred ---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcce-ecCHHH
Confidence 35667777777776663 444 44 667777777666664333 322 44 77777777666 455555
Q ss_pred CCCCCccEEeccCCcccCcCC
Q 036588 229 FKMPLLQFLDLSSNRLSAELP 249 (541)
Q Consensus 229 ~~~~~L~~L~l~~~~~~~~~~ 249 (541)
..+++|+.|++++|.+.+..+
T Consensus 227 ~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 227 LSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp GGSCTTEEEECCSSSCCHHHH
T ss_pred hcCCCCCEEEeeCCcCCCcCH
Confidence 556777777777776654333
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.68 E-value=3.9e-16 Score=137.72 Aligned_cols=100 Identities=23% Similarity=0.317 Sum_probs=50.0
Q ss_pred CeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeec
Q 036588 22 RVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFL 101 (541)
Q Consensus 22 ~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 101 (541)
++++|+++++.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|.+ +.+|..++.++++|++|++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI-TELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC-CCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC-CccCHhHccCCCCCCEEEC
Confidence 455555555555544444555555555555555555544455555555555555555554 2444444333555555555
Q ss_pred cccccCccCCccCCCCCCCcE
Q 036588 102 KSNMFHGKIPSTLSSCKRLRE 122 (541)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~L~~ 122 (541)
++|++....+..|..+++|++
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~ 132 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNL 132 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCCEeCHHHcCCCCCCCE
Confidence 555554444444444444444
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.68 E-value=2.7e-16 Score=145.19 Aligned_cols=171 Identities=26% Similarity=0.289 Sum_probs=100.2
Q ss_pred ccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCcc
Q 036588 301 ISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLE 380 (541)
Q Consensus 301 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 380 (541)
...+++|+.|++++|.+... ..+..+++|++|++++|.+....+ +..+++|+.|++++|.+++ ++. +..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LSS--LKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GGG--GTTCTTCC
T ss_pred hhhcCcccEEEccCCCcccC-hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Chh--hccCCCCC
Confidence 34567778888877776543 346667777777777776664332 5566677777777766642 221 44566666
Q ss_pred EEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcC
Q 036588 381 ELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQL 460 (541)
Q Consensus 381 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 460 (541)
.|++++|.+.+. ..+..+++|++|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcC
Confidence 666666665432 3455566666666666665543 345556666666666665554333 45555556666655555
Q ss_pred CCCCCccccCCCCccEeeCCCCcc
Q 036588 461 SGSLPSFKFKMPLLQFLDLSSNRL 484 (541)
Q Consensus 461 ~~~~~~~~~~~~~L~~L~l~~~~~ 484 (541)
.+ ++ .+..+++|+.|++++|++
T Consensus 191 ~~-l~-~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 191 SD-LR-ALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CB-CG-GGTTCTTCSEEEEEEEEE
T ss_pred CC-Ch-hhccCCCCCEEECcCCcc
Confidence 43 22 245555555555555555
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.68 E-value=3.1e-16 Score=144.85 Aligned_cols=175 Identities=25% Similarity=0.277 Sum_probs=143.3
Q ss_pred cccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCcc
Q 036588 323 YVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSY 402 (541)
Q Consensus 323 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 402 (541)
....+++|+.|++++|.+... ..+..+++|+.|++++|.+++ ++. +..+++|+.|++++|.+.+ ...+..+++
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~--~~~l~~l~~ 113 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTD-IKP--LANLKNLGWLFLDENKVKD--LSSLKDLKK 113 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCC--GGGGTTCTT
T ss_pred chhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCC-Ccc--cccCCCCCEEECCCCcCCC--ChhhccCCC
Confidence 356788999999999988744 236778999999999999873 333 6689999999999998864 234888999
Q ss_pred CCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCC
Q 036588 403 LRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSN 482 (541)
Q Consensus 403 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 482 (541)
|++|++++|.+... ..+..+++|+.|++++|++... +.+..+++|+.|++++|.+.+..+ +..+++|+.|++++|
T Consensus 114 L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 114 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188 (291)
T ss_dssp CCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence 99999999988764 4688899999999999998755 567888999999999998885444 788999999999999
Q ss_pred ccccccCcccccCCcccceeeeccceeccc
Q 036588 483 RLSTELPTNVFHNLPFLEELYLSNNMFYGE 512 (541)
Q Consensus 483 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 512 (541)
.+.+ ++ .+..+++|+.|++++|++.+.
T Consensus 189 ~i~~-l~--~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 189 HISD-LR--ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CCCB-CG--GGTTCTTCSEEEEEEEEEECC
T ss_pred cCCC-Ch--hhccCCCCCEEECcCCcccCC
Confidence 8844 54 378889999999999998854
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.67 E-value=3.7e-16 Score=156.32 Aligned_cols=187 Identities=28% Similarity=0.296 Sum_probs=109.2
Q ss_pred CccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEcc
Q 036588 306 KLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLS 385 (541)
Q Consensus 306 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 385 (541)
+++.|++++|.+......+ .++|++|++++|.+. .++ ..+++|+.|++++|.+++ ++. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~--l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE--LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC--CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch--hhc--CCCEEECC
Confidence 7778888777766533323 366777777777766 333 345677777777777653 444 222 67777777
Q ss_pred CcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCC
Q 036588 386 NNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLP 465 (541)
Q Consensus 386 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 465 (541)
+|.+.+ ++. .+++|+.|++++|.++.. +. .+++|+.|++++|++..... +. ++|+.|++++|.+. .+|
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~-~lp 196 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTML-PE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE-SLP 196 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS-SCC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCcC-CC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC-chh
Confidence 776653 333 466677777777766642 22 35666677777666654333 32 66666666666666 334
Q ss_pred ccccCCCCc-------cEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCc
Q 036588 466 SFKFKMPLL-------QFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNC 520 (541)
Q Consensus 466 ~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 520 (541)
. +.. +| +.|++++|.+ +.+|.. +..+++|+.|++++|++.+.+|..+..+
T Consensus 197 ~-~~~--~L~~~~~~L~~L~Ls~N~l-~~lp~~-l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 197 A-VPV--RNHHSEETEIFFRCRENRI-THIPEN-ILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp C-CC----------CCEEEECCSSCC-CCCCGG-GGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred h-HHH--hhhcccccceEEecCCCcc-eecCHH-HhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 3 332 45 6666666666 335533 3336666666666666665555554443
No 106
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.67 E-value=3.2e-15 Score=144.76 Aligned_cols=308 Identities=13% Similarity=0.019 Sum_probs=141.1
Q ss_pred cCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCCC
Q 036588 152 EIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFKM 231 (541)
Q Consensus 152 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 231 (541)
+...+|.+|++|+.+++..+ +......++..+..|+.+.+..+-..-....+..+..++....... ......++..+
T Consensus 85 I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~~~--~~i~~~aF~~c 161 (394)
T 4fs7_A 85 IGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPEGV--TVIGDEAFATC 161 (394)
T ss_dssp ECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCTTC--CEECTTTTTTC
T ss_pred cchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccccCccc--cccchhhhccc
Confidence 33445666666666666543 3333344555555665555443311111111222222211111111 11122334445
Q ss_pred CCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEE
Q 036588 232 PLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLD 311 (541)
Q Consensus 232 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 311 (541)
++|+.+.+..+. ..+....|.++.+|+.+.+..+ +......+|..++.|+.+.+..+... ..........|+.+.
T Consensus 162 ~~L~~i~l~~~~--~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ 236 (394)
T 4fs7_A 162 ESLEYVSLPDSM--ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNII 236 (394)
T ss_dssp TTCCEEECCTTC--CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEE
T ss_pred CCCcEEecCCcc--ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEE
Confidence 555555554332 1233444555555555555432 22233444444555544444332211 111112223444444
Q ss_pred eeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCccccc
Q 036588 312 LQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYG 391 (541)
Q Consensus 312 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 391 (541)
+.... .......+..+..++.+.+..+.. .+....|..++.++.+......+
T Consensus 237 ip~~~------------------------~~i~~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i-- 288 (394)
T 4fs7_A 237 IPDSF------------------------TELGKSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIV-- 288 (394)
T ss_dssp ECTTC------------------------CEECSSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEE--
T ss_pred ECCCc------------------------eecccccccccccceeEEcCCCcc--eeeccccccccccceeccCceee--
Confidence 43221 112233444555555555544332 23444455555555555544332
Q ss_pred CCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCC-CcccCCcceEeccCCcCCCCCCccccC
Q 036588 392 EIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSGSLPSFKFK 470 (541)
Q Consensus 392 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~ 470 (541)
....|..+.+|+.+.+..+ +..+...+|..|.+|+.+.+... +...... +..+.+|+.+++..+ +..+...+|.+
T Consensus 289 -~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~ 364 (394)
T 4fs7_A 289 -PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQG 364 (394)
T ss_dssp -CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTT
T ss_pred -ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhC
Confidence 2234556666666666543 33344556666666666666432 2222222 455666666666554 44355567777
Q ss_pred CCCccEeeCCCCccccccCcccccCCccccee
Q 036588 471 MPLLQFLDLSSNRLSTELPTNVFHNLPFLEEL 502 (541)
Q Consensus 471 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 502 (541)
|++|+.+.+..+- ..+. ..|.+|++|+.+
T Consensus 365 C~~L~~i~lp~~~--~~~~-~~F~~c~~L~~I 393 (394)
T 4fs7_A 365 CINLKKVELPKRL--EQYR-YDFEDTTKFKWI 393 (394)
T ss_dssp CTTCCEEEEEGGG--GGGG-GGBCTTCEEEEE
T ss_pred CCCCCEEEECCCC--EEhh-heecCCCCCcEE
Confidence 7777777775432 2232 456777777664
No 107
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=6.2e-17 Score=152.74 Aligned_cols=103 Identities=18% Similarity=0.138 Sum_probs=48.9
Q ss_pred CCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEec
Q 036588 376 LPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDL 455 (541)
Q Consensus 376 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 455 (541)
+++|+.+++++|.+.......|.+|++|+++++.++ +..+...+|..|++|+ ..+++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~----------------------~~l~l 281 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLA----------------------GTLEL 281 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC----------------------EEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhcc----------------------EEEEE
Confidence 444444444444444333344444444444444443 3333344444444444 04444
Q ss_pred cCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceee
Q 036588 456 SDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELY 503 (541)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 503 (541)
.. .+..+.+.+|.+|++|+.+++.++.+ ..++...|.++++|+.++
T Consensus 282 ~~-~l~~I~~~aF~~c~~L~~l~l~~n~i-~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 282 PA-SVTAIEFGAFMGCDNLRYVLATGDKI-TTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CT-TCCEECTTTTTTCTTEEEEEECSSCC-CEECTTTTCTTCCCCEEE
T ss_pred cc-cceEEchhhhhCCccCCEEEeCCCcc-CccchhhhcCCcchhhhc
Confidence 43 33334444555555666666555555 334445555566665554
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=3.8e-16 Score=135.47 Aligned_cols=152 Identities=18% Similarity=0.198 Sum_probs=71.9
Q ss_pred hhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEec
Q 036588 66 FNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLS 145 (541)
Q Consensus 66 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~ 145 (541)
..+++|++|++++|.+. .+| .+.. +++|++|++++|.++ .+..+..+++|++ |+++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~-l~~L~~L~l~~n~~~--~~~~l~~l~~L~~-------------------L~l~ 96 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEY-AHNIKDLTINNIHAT--NYNPISGLSNLER-------------------LRIM 96 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGG-CTTCSEEEEESCCCS--CCGGGTTCTTCCE-------------------EEEE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhc-CCCCCEEEccCCCCC--cchhhhcCCCCCE-------------------EEeE
Confidence 44445555555555542 333 3333 555555555555333 1123334444444 3333
Q ss_pred CccccccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCce-eeeeccCCCCcCCCCEEECCCCcccCCC
Q 036588 146 KNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNK-LQGTIPYAGHLYQLQWLDLSDNQLSGSL 224 (541)
Q Consensus 146 ~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 224 (541)
+|.+.+..+..+..+++|+.|++++|.+.+..+..++.+++|++|++++|. +.+. +.+..+++|+.|++++|.+.. .
T Consensus 97 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~~l~~l~~L~~L~l~~n~i~~-~ 174 (197)
T 4ezg_A 97 GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHD-Y 174 (197)
T ss_dssp CTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-GGGGGCSSCCEEECTTBCCCC-C
T ss_pred CCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-HhhcCCCCCCEEECCCCCCcC-h
Confidence 344443334445555555555555555554444455555555555555554 3322 244555555555555555542 2
Q ss_pred CcccCCCCCccEEeccCCcc
Q 036588 225 PSFKFKMPLLQFLDLSSNRL 244 (541)
Q Consensus 225 ~~~~~~~~~L~~L~l~~~~~ 244 (541)
+ .+..+++|++|++++|.+
T Consensus 175 ~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 175 R-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp T-TGGGCSSCCEEEECBC--
T ss_pred H-HhccCCCCCEEEeeCccc
Confidence 2 344556666666666554
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=3.5e-16 Score=135.63 Aligned_cols=153 Identities=20% Similarity=0.223 Sum_probs=114.1
Q ss_pred CCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccc-cCCCcccCCcceE
Q 036588 375 NLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGT-IPYAGHLFQLQWL 453 (541)
Q Consensus 375 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L 453 (541)
.+++|+.|++++|.+. .++ .+..+++|++|++++|.+.. +..+..+++|++|++++|.+... ...+..+++|+.|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 5667777777777775 333 56777788888888886543 34677788888888888887753 3447778888888
Q ss_pred eccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCccccceEEeecccc
Q 036588 454 DLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCSYLRILVVQFNNF 533 (541)
Q Consensus 454 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 533 (541)
++++|.+.+..+..+..+++|++|++++|...+.++ .+..+++|+.|++++|++.+. + .+..+++|+.|++++|++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCccc
Confidence 888888876667778888899999999988335564 477888999999999988853 3 788889999999999887
Q ss_pred cc
Q 036588 534 SG 535 (541)
Q Consensus 534 ~~ 535 (541)
.+
T Consensus 194 ~~ 195 (197)
T 4ezg_A 194 GG 195 (197)
T ss_dssp --
T ss_pred CC
Confidence 54
No 110
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=4.7e-16 Score=146.72 Aligned_cols=285 Identities=13% Similarity=0.061 Sum_probs=134.4
Q ss_pred CCccEEEeccCcccccCCccccc-cCCCcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCCCcccCC--------C
Q 036588 161 SYLRILVLQFNNFSGAIPKEISN-LTKLEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSLPSFKFK--------M 231 (541)
Q Consensus 161 ~~L~~L~l~~~~i~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--------~ 231 (541)
++++.|.+++. +.......+.. +++|+.|+++++.+.......+.++.++.+....+.+ ....+.. +
T Consensus 25 ~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~ 100 (329)
T 3sb4_A 25 NSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFV---PAYAFSNVVNGVTKGK 100 (329)
T ss_dssp HHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEE---CTTTTEEEETTEEEEC
T ss_pred CceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccccc---CHHHhccccccccccc
Confidence 45555555543 11111122223 4566666666666552111112222233333333321 2233444 6
Q ss_pred CCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccc----cCCCccccccccCCc
Q 036588 232 PLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNN----FSGAIPKEISNLTKL 307 (541)
Q Consensus 232 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~----~~~~~~~~l~~l~~L 307 (541)
++|+.+.+.. .+ ..++...|.+|++|+.+++..+.+....+.+|..+.++..+...... ........+..+..|
T Consensus 101 ~~L~~l~L~~-~i-~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 101 QTLEKVILSE-KI-KNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp TTCCC-CBCT-TC-CEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred CCCcEEECCc-cc-cchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 7777777766 44 35566667777777777777766666666667666666655544321 111122234445555
Q ss_pred c-EEEeeCCcccccc--ccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEc
Q 036588 308 E-KLDLQYNRLQGTI--LYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYL 384 (541)
Q Consensus 308 ~-~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 384 (541)
+ .+.+......... .......++..+.+.+.-...........+++|+.+++++|.++ .++...|.++++|+.+++
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEEC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEEC
Confidence 5 3333322111000 00112233333333332111000011112455566666555554 555555555666666666
Q ss_pred cCcccccCCCcCCcCCccCC-eEEcccCCCCCccchhhhccCCCcEEEccccccccccCC-CcccCCcceEe
Q 036588 385 SNNMFYGEIPSDTQNCSYLR-ILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLD 454 (541)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~ 454 (541)
.++ +.......|.+|++|+ .+++.. .+..+...+|..|++|+.+++.++.+...... +..+++|+.++
T Consensus 258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 258 PHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred Ccc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 554 3334444556666666 666655 44445555666666666666655555544333 45555665554
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.64 E-value=1.6e-15 Score=133.81 Aligned_cols=152 Identities=22% Similarity=0.239 Sum_probs=109.6
Q ss_pred EEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccc
Q 036588 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKS 103 (541)
Q Consensus 24 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 103 (541)
+.++.++++++ .+|..+. ++++.|++++|.++...+..|..+++|++|++++|.+.+..|..+.. +++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~-l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG-LRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT-CSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC-CcCCCEEECCC
Confidence 35666777777 4565554 68899999999888556667888888899988888885444555555 88888888888
Q ss_pred cccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccc
Q 036588 104 NMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISN 183 (541)
Q Consensus 104 ~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~ 183 (541)
|.++...+..|..+++|++ |++++|.+....+..|..+++|+.|++++|.+....+..+..
T Consensus 90 N~l~~l~~~~f~~l~~L~~-------------------L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 150 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQL-------------------LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCE-------------------EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred CcCCccCHhHccCCCCCCE-------------------EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhC
Confidence 8888655556677777766 555556666666667777777777777777777555556677
Q ss_pred cCCCcEEEccCceee
Q 036588 184 LTKLEKLDLQYNKLQ 198 (541)
Q Consensus 184 l~~L~~L~l~~~~~~ 198 (541)
+++|+.|++++|.+.
T Consensus 151 l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 151 LRAIQTMHLAQNPFI 165 (220)
T ss_dssp CTTCCEEECCSSCEE
T ss_pred CCCCCEEEeCCCCcC
Confidence 777777777776654
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.64 E-value=2.7e-15 Score=151.86 Aligned_cols=171 Identities=25% Similarity=0.287 Sum_probs=97.1
Q ss_pred ccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCcc
Q 036588 301 ISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLE 380 (541)
Q Consensus 301 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 380 (541)
+..+++|+.|++++|.+... +.+..+++|+.|++++|.+....+ +..+++|+.|++++|.+. .++ .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~--~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS--SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC-TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT--TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCC-hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh--hhccCCCCC
Confidence 34567777777777766533 346666677777777666654332 555666666666666654 222 244556666
Q ss_pred EEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcC
Q 036588 381 ELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQL 460 (541)
Q Consensus 381 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 460 (541)
.|++++|.+.+. ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCC
Confidence 666666655421 3355556666666666655543 345555666666666665554433 45555566666665555
Q ss_pred CCCCCccccCCCCccEeeCCCCcc
Q 036588 461 SGSLPSFKFKMPLLQFLDLSSNRL 484 (541)
Q Consensus 461 ~~~~~~~~~~~~~L~~L~l~~~~~ 484 (541)
.+. ..+..+++|+.|++++|++
T Consensus 188 ~~l--~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 188 SDL--RALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp CBC--GGGTTCTTCSEEECCSEEE
T ss_pred CCC--hHHccCCCCCEEEccCCcC
Confidence 432 2345555566666655555
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.64 E-value=1e-15 Score=154.90 Aligned_cols=169 Identities=25% Similarity=0.313 Sum_probs=80.5
Q ss_pred ccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCC
Q 036588 41 LGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRL 120 (541)
Q Consensus 41 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 120 (541)
+..+++|+.|+++++.+. .++ .+..+++|++|+|++|.+. .++. +.. +++|+.|++++|.+.. + ..+..+++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~-~~~~-l~~-l~~L~~L~Ls~N~l~~-l-~~l~~l~~L 111 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLT-DIKP-LTN-LKNLGWLFLDENKIKD-L-SSLKDLKKL 111 (605)
T ss_dssp HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCC-CCGG-GGG-CTTCCEEECCSSCCCC-C-TTSTTCTTC
T ss_pred hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCC-CChh-hcc-CCCCCEEECcCCCCCC-C-hhhccCCCC
Confidence 345566666666666655 333 3566666666666666653 2322 333 6666666666666553 2 245555555
Q ss_pred cEEecCCCccc---cccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCcee
Q 036588 121 RETSLSLNDFF---WDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKL 197 (541)
Q Consensus 121 ~~l~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~ 197 (541)
++|++++|.+. .+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+
T Consensus 112 ~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 112 KSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp CEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCCCCCccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 55444444332 111223333344444444332 234444455555555444442222 44444445555444444
Q ss_pred eeeccCCCCcCCCCEEECCCCccc
Q 036588 198 QGTIPYAGHLYQLQWLDLSDNQLS 221 (541)
Q Consensus 198 ~~~~~~~~~~~~L~~L~l~~~~~~ 221 (541)
.+. +.+..+++|+.|++++|.+.
T Consensus 188 ~~l-~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 188 SDL-RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CBC-GGGTTCTTCSEEECCSEEEE
T ss_pred CCC-hHHccCCCCCEEEccCCcCc
Confidence 432 23444444444444444443
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.63 E-value=4.8e-15 Score=131.66 Aligned_cols=151 Identities=26% Similarity=0.286 Sum_probs=98.9
Q ss_pred eEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccc
Q 036588 355 QFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQY 434 (541)
Q Consensus 355 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 434 (541)
+.++.+++.++ .++... .++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..|..+++|+.|++++
T Consensus 22 ~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 45666666654 455432 36677777777777665566677777777777777777665556667777777777777
Q ss_pred cccccccCC-CcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecc
Q 036588 435 NRLQGTIPY-AGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYG 511 (541)
Q Consensus 435 ~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 511 (541)
|++....+. +..+++|+.|++++|.+. .+|..+..+++|++|++++|.+. .++...+..+++|+.|++.+|++.+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCCccC
Confidence 776654443 456677777777777666 45555666777777777777663 3444556666777777777776663
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.63 E-value=3.7e-15 Score=131.41 Aligned_cols=150 Identities=22% Similarity=0.246 Sum_probs=75.3
Q ss_pred EEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCC-cCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccc
Q 036588 356 FLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIP-SDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQY 434 (541)
Q Consensus 356 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 434 (541)
.++++++.++ .++... .+.+++|++++|.+....+ ..|..+++|++|++++|.+....+..|..+++|++|++++
T Consensus 15 ~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 5556665554 344322 2334556666655543322 2345555555555555555544444555555555555555
Q ss_pred cccccccCC-CcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceec
Q 036588 435 NRLQGTIPY-AGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFY 510 (541)
Q Consensus 435 ~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 510 (541)
|.+....+. +..+++|++|++++|.+....+..+..+++|++|++++|.+.+ ++...+..+++|+.|++++|++.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT-VAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCC-BCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCE-ECHHHhcCCCCCCEEEecCcCCc
Confidence 555443332 4445555555555555554444445555555555555555533 22234444555555555555544
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.63 E-value=6.9e-16 Score=147.43 Aligned_cols=175 Identities=34% Similarity=0.303 Sum_probs=119.0
Q ss_pred cEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhc-CCCCccEEEccCcccccCCCcCCcCCccCCeEEcc
Q 036588 331 QWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFH-NLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLK 409 (541)
Q Consensus 331 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 409 (541)
+.++++++.+.. ++..+ .+.++.|++++|.++ .++...+. .+++|+.|++++|.+....+..|..+++|++|+++
T Consensus 21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 467777776663 33222 245777888888776 45555555 77788888888887776666667777888888888
Q ss_pred cCCCCCccchhhhccCCCcEEEccccccccccCC-CcccCCcceEeccCCcCCCCCCccc---cCCCCccEeeCCCCccc
Q 036588 410 FNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSGSLPSFK---FKMPLLQFLDLSSNRLS 485 (541)
Q Consensus 410 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~ 485 (541)
+|.+....+..|..+++|+.|++++|++....+. +..+++|+.|++++|.+....+..+ ..+++|+.|++++|.+.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 8877766666777778888888888777655443 6667777777777777774433344 45777777777777773
Q ss_pred cccCcccccCCcc--cceeeeccceec
Q 036588 486 TELPTNVFHNLPF--LEELYLSNNMFY 510 (541)
Q Consensus 486 ~~~~~~~~~~~~~--L~~L~l~~~~~~ 510 (541)
.++...+..++. ++.|++.+|++.
T Consensus 177 -~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 -KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp -CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred -ccCHHHhhhccHhhcceEEecCCCcc
Confidence 455555666665 367777777776
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.62 E-value=1.3e-15 Score=138.27 Aligned_cols=165 Identities=20% Similarity=0.198 Sum_probs=76.6
Q ss_pred CcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcc
Q 036588 330 LQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLK 409 (541)
Q Consensus 330 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 409 (541)
+..+++.++.+.+.. .+..+++|+.|++++|.++ .++ .+..+++|+.|++++|++.+..+ +..+++|++|+++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 334444444443221 2334555555555555554 222 23345555555555555542221 4555555555555
Q ss_pred cCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccC
Q 036588 410 FNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELP 489 (541)
Q Consensus 410 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 489 (541)
+|++..... +.. ++|+.|++++|.+... +.+..+++|+.|++++|.+.+. + .+..+++|++|++++|.+.+.
T Consensus 94 ~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-- 165 (263)
T 1xeu_A 94 RNRLKNLNG--IPS-ACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-- 165 (263)
T ss_dssp SSCCSCCTT--CCC-SSCCEEECCSSCCSBS-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--
T ss_pred CCccCCcCc--ccc-CcccEEEccCCccCCC-hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--
Confidence 555543211 111 5555555555554432 2344455555555555554432 1 344455555555555555332
Q ss_pred cccccCCcccceeeeccceec
Q 036588 490 TNVFHNLPFLEELYLSNNMFY 510 (541)
Q Consensus 490 ~~~~~~~~~L~~L~l~~~~~~ 510 (541)
..+..+++|+.|++++|++.
T Consensus 166 -~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEEE
T ss_pred -HHhccCCCCCEEeCCCCccc
Confidence 23444555555555555554
No 118
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.62 E-value=3e-14 Score=137.00 Aligned_cols=263 Identities=11% Similarity=0.068 Sum_probs=141.2
Q ss_pred CCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEE
Q 036588 231 MPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKL 310 (541)
Q Consensus 231 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 310 (541)
+..++.+.+...- ..++...|.++ +|+.+.+..+ +......+|.++ +|+.+.+.. .+.......|..|++|+.+
T Consensus 112 ~~~l~~i~ip~~i--~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPNSV--KSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCTTC--CEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECCcc--CEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 3555555555432 23445555554 5666666543 444555555553 466666654 3333333445555666666
Q ss_pred EeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccc
Q 036588 311 DLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFY 390 (541)
Q Consensus 311 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 390 (541)
++..+.+...... .|. +.+|+.+.+..+ ++ .+....|.++++|+.+.+..+ +.
T Consensus 186 ~l~~n~l~~I~~~-----------------------aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~ 238 (401)
T 4fdw_A 186 DLSKTKITKLPAS-----------------------TFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VS 238 (401)
T ss_dssp ECTTSCCSEECTT-----------------------TTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CC
T ss_pred ecCCCcceEechh-----------------------hEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-cc
Confidence 6655544433322 222 344444444432 22 344444555555555555442 22
Q ss_pred cCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccc-----cccC-CCcccCCcceEeccCCcCCCCC
Q 036588 391 GEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQ-----GTIP-YAGHLFQLQWLDLSDNQLSGSL 464 (541)
Q Consensus 391 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-----~~~~-~~~~~~~L~~L~l~~~~~~~~~ 464 (541)
.....+|.+ .+|+.+.+. +.+..+...+|..|++|+.+.+.++... .... .+..+++|+.+.+.. .+..+.
T Consensus 239 ~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~ 315 (401)
T 4fdw_A 239 TIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILG 315 (401)
T ss_dssp EECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEEC
T ss_pred Ccccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEh
Confidence 223334444 455555552 2333344555555666666665554432 1111 255666667666663 344455
Q ss_pred CccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceecccCCCCCCCcc-ccceEEeeccc
Q 036588 465 PSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIPSDTPNCS-YLRILVVQFNN 532 (541)
Q Consensus 465 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~ 532 (541)
..+|.+|++|+.+.+..+ + ..+....|.+| +|+.+++.++.........|..++ .++.|++..+.
T Consensus 316 ~~aF~~c~~L~~l~lp~~-l-~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 316 QGLLGGNRKVTQLTIPAN-V-TQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp TTTTTTCCSCCEEEECTT-C-CEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred hhhhcCCCCccEEEECcc-c-cEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 566777778888877544 3 44666677777 788888887777756666777774 67777777653
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=3e-17 Score=165.20 Aligned_cols=205 Identities=20% Similarity=0.169 Sum_probs=131.4
Q ss_pred ccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCc-------------cCCCCChhhhhhcCCCcEee-cccccc
Q 036588 41 LGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNA-------------LFGELPPNFCNHLSNLESLF-LKSNMF 106 (541)
Q Consensus 41 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~~~~~l~~L~~L~-l~~~~~ 106 (541)
+..+++|+.|++++|.++ .+|..++++++|+.|++.++. ..+..|..+.. +++|+.|+ ++.+.+
T Consensus 345 ~~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~-l~~L~~L~~l~~n~~ 422 (567)
T 1dce_A 345 SATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY-FSTLKAVDPMRAAYL 422 (567)
T ss_dssp CSTTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHH-HHHHHHHCGGGHHHH
T ss_pred cccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHH-HHhcccCcchhhccc
Confidence 367899999999999998 899999999999999987664 22333333333 67777666 444432
Q ss_pred CccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccccCC
Q 036588 107 HGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTK 186 (541)
Q Consensus 107 ~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~ 186 (541)
. +|..+.+..+.+.... ...|+.|++++|.+.+ +|. +..+++|+.|++++|.+. .+|..++.+++
T Consensus 423 ~-----------~L~~l~l~~n~i~~l~-~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~ 487 (567)
T 1dce_A 423 D-----------DLRSKFLLENSVLKME-YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRC 487 (567)
T ss_dssp H-----------HHHHHHHHHHHHHHHH-HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTT
T ss_pred c-----------hhhhhhhhcccccccC-ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCC
Confidence 2 2222222222222111 1246667777777765 344 777777777777777777 66777777777
Q ss_pred CcEEEccCceeeeeccCCCCcCCCCEEECCCCcccCCC-CcccCCCCCccEEeccCCcccCcCC--hhhhccCCCCcEEE
Q 036588 187 LEKLDLQYNKLQGTIPYAGHLYQLQWLDLSDNQLSGSL-PSFKFKMPLLQFLDLSSNRLSAELP--TNVFHNLPFLEELY 263 (541)
Q Consensus 187 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~ 263 (541)
|+.|++++|.+++. +.+..+++|+.|++++|.+.+.. |..+..+++|+.|++++|.+.+..+ ..++..+++|+.|+
T Consensus 488 L~~L~Ls~N~l~~l-p~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 488 LEVLQASDNALENV-DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCEEECCSSCCCCC-GGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCEEECCCCCCCCC-cccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 77777777777654 36667777777777777776554 6666667777777777776643322 12334455555553
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.61 E-value=8.9e-15 Score=128.96 Aligned_cols=156 Identities=24% Similarity=0.240 Sum_probs=125.4
Q ss_pred cEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEccc
Q 036588 331 QWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKF 410 (541)
Q Consensus 331 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 410 (541)
+.++++++.+.. ++..+ .+.++.|++++|.++...+...+..+++|+.|++++|.+.+..+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 466666666653 23222 345678888888887444556677889999999999988866667889999999999999
Q ss_pred CCCCCccchhhhccCCCcEEEccccccccccCC-CcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccC
Q 036588 411 NNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELP 489 (541)
Q Consensus 411 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 489 (541)
|.+....+..|..+++|++|++++|++....+. +..+++|+.|++++|.+....+..+..+++|++|++++|++....+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 999888888899999999999999998876554 7788999999999999987778889999999999999999865443
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.61 E-value=2.5e-15 Score=143.56 Aligned_cols=174 Identities=27% Similarity=0.176 Sum_probs=97.3
Q ss_pred EEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhh-hcCCCcEEEeecCccCCCCChhhhhhcCCCcEeecc
Q 036588 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIF-NMSSLLSINFINNALFGELPPNFCNHLSNLESLFLK 102 (541)
Q Consensus 24 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 102 (541)
++++.++++++ .+|..+. +.++.|+|++|.+++..+..+. ++++|++|++++|.+. .++...+.++++|++|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECC
Confidence 35666666666 3454443 3467777777777644455555 6777777777777763 3333333337777777777
Q ss_pred ccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccc-
Q 036588 103 SNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEI- 181 (541)
Q Consensus 103 ~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l- 181 (541)
+|+++...+..|..+++|++|++ ++|.+....+..|..+++|+.|++++|.+....+..+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L-------------------~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 157 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLL-------------------YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK 157 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEEC-------------------CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC
T ss_pred CCcCCcCCHHHhCCCcCCCEEEC-------------------CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhc
Confidence 77777655566666666666433 3444444444455555666666666655553222222
Q ss_pred --cccCCCcEEEccCceeeeeccC-CCCcCC--CCEEECCCCcc
Q 036588 182 --SNLTKLEKLDLQYNKLQGTIPY-AGHLYQ--LQWLDLSDNQL 220 (541)
Q Consensus 182 --~~l~~L~~L~l~~~~~~~~~~~-~~~~~~--L~~L~l~~~~~ 220 (541)
..+++|+.|++++|.+...... +..++. ++.|++++|.+
T Consensus 158 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp ----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred CcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence 3455666666666655543321 333333 35566666554
No 122
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.60 E-value=4.7e-14 Score=135.61 Aligned_cols=215 Identities=13% Similarity=0.071 Sum_probs=137.1
Q ss_pred CcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccE
Q 036588 206 HLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRI 285 (541)
Q Consensus 206 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 285 (541)
.+..++.+.+.. .++.....++..+ +|+.+.+..+ + ..+....|.++ +|+.+.+.. .+......+|.+|++|+.
T Consensus 111 ~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i-~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-L-KSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp ECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-C-CEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred ecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-c-cEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence 346788888865 3443445556654 7999999876 3 46777788885 799999986 566678899999999999
Q ss_pred EEecccccCCCccccccccCCccEEEeeCCcccccc-ccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcC
Q 036588 286 LVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTI-LYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRL 364 (541)
Q Consensus 286 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 364 (541)
+++.++.+.......+. +.+|+.+.+..+ +.... ..|..+++|+.+.+..+ +..+....|.+ .+|+.+.+.++ +
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~-i 259 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG-V 259 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT-C
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC-c
Confidence 99999887755555554 689999998754 33222 23667777777777653 33334444444 56666666432 3
Q ss_pred cCcCChhhhcCCCCccEEEccCcccc-----cCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEcc
Q 036588 365 SVELPTNVFHNLPFLEELYLSNNMFY-----GEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQ 433 (541)
Q Consensus 365 ~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 433 (541)
+ .+....|.+|++|+.+.+.++... ......|.+|++|+.+.+.. .+..+...+|..|.+|+.+.+.
T Consensus 260 ~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 260 T-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp C-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEEC
T ss_pred c-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEEC
Confidence 2 455556666666666666655432 12334555566666665552 2444444555555555555553
No 123
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.58 E-value=5.3e-15 Score=134.23 Aligned_cols=166 Identities=23% Similarity=0.293 Sum_probs=75.3
Q ss_pred CCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcE
Q 036588 43 NLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRE 122 (541)
Q Consensus 43 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 122 (541)
.+.++..++++++.++ .++ .+..+++|++|++++|.+ +.++ .+.. +++|++|++++|.+++..+ +.++++|++
T Consensus 17 ~l~~l~~l~l~~~~i~-~~~-~~~~l~~L~~L~l~~n~i-~~l~-~l~~-l~~L~~L~L~~N~i~~~~~--l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVT-DLV-SQKELSGVQNFNGDNSNI-QSLA-GMQF-FTNLKELHLSHNQISDLSP--LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTT-SEE-CHHHHTTCSEEECTTSCC-CCCT-TGGG-CTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred HHHHHHHHHhcCCCcc-ccc-chhhcCcCcEEECcCCCc-ccch-HHhh-CCCCCEEECCCCccCCChh--hccCCCCCE
Confidence 3444555555555555 333 455566666666666655 2333 3333 6666666666666553332 555555555
Q ss_pred EecCCCccccccc--cCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceeeee
Q 036588 123 TSLSLNDFFWDHT--KRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGT 200 (541)
Q Consensus 123 l~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ 200 (541)
|+++++.+..... .++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+.
T Consensus 90 L~L~~N~l~~l~~~~~~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 90 LSVNRNRLKNLNGIPSACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp EECCSSCCSCCTTCCCSSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC
T ss_pred EECCCCccCCcCccccCcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch
Confidence 4444333211000 02333344444444332 1344444455555544444422 1344444444444444444433
Q ss_pred ccCCCCcCCCCEEECCCCcc
Q 036588 201 IPYAGHLYQLQWLDLSDNQL 220 (541)
Q Consensus 201 ~~~~~~~~~L~~L~l~~~~~ 220 (541)
..+..+++|+.|++++|.+
T Consensus 166 -~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEE
T ss_pred -HHhccCCCCCEEeCCCCcc
Confidence 3333344444444444433
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.55 E-value=7.8e-15 Score=123.68 Aligned_cols=136 Identities=27% Similarity=0.227 Sum_probs=75.8
Q ss_pred ccCCeEEcccCCCC-CccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEeeC
Q 036588 401 SYLRILVLKFNNFP-GAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDL 479 (541)
Q Consensus 401 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 479 (541)
++|++|++++|.+. ...+..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+....+..+..+++|++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 44555555555443 22333344555555555555554433 44455556666666666655445555555666666666
Q ss_pred CCCccccccCc-ccccCCcccceeeeccceecccCC---CCCCCccccceEEeecccccccCCC
Q 036588 480 SSNRLSTELPT-NVFHNLPFLEELYLSNNMFYGEIP---SDTPNCSYLRILVVQFNNFSGAIPK 539 (541)
Q Consensus 480 ~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~p~ 539 (541)
++|.+.+ ++. ..+..+++|+.|++++|++.+..+ ..+..+++|+.|++++|.+. .+|+
T Consensus 103 s~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 103 SGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp BSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred cCCccCc-chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 6666633 321 345566667777777776663322 25666677777777777664 4444
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.53 E-value=2.3e-14 Score=120.73 Aligned_cols=133 Identities=18% Similarity=0.076 Sum_probs=94.0
Q ss_pred CCCeEEEEecCCcce-eeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcE
Q 036588 20 TYRVTALNISGLNLT-VTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLES 98 (541)
Q Consensus 20 ~~~l~~L~l~~~~i~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 98 (541)
.+++++|+++++.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+.. +++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK-LPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH-CTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh-CCCCCE
Confidence 467899999999887 66788888899999999999888744 77888889999999988885555555444 888888
Q ss_pred eeccccccCccC-CccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCC---ccccCCCCccEEEeccCccc
Q 036588 99 LFLKSNMFHGKI-PSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIP---SDIANCSYLRILVLQFNNFS 174 (541)
Q Consensus 99 L~l~~~~~~~~~-~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~i~ 174 (541)
|++++|.++... +..+..+++|++ |++++|.+.+..+ ..+..+++|+.|++.+|.+.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~-------------------L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKS-------------------LDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCE-------------------EECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCE-------------------EEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 888888877432 145566666655 4444444443332 25566666666666666554
No 126
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.53 E-value=3.4e-12 Score=123.39 Aligned_cols=159 Identities=10% Similarity=0.105 Sum_probs=80.6
Q ss_pred ceeeeCCcccCCC-CCcEecccccccCCccchhhhhcCCCcEEEeecCc--cCCCCChhhhhhcCCCcEeeccccccCcc
Q 036588 33 LTVTIPSELGNLS-SLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNA--LFGELPPNFCNHLSNLESLFLKSNMFHGK 109 (541)
Q Consensus 33 i~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 109 (541)
++.+-..+|.+++ .|+.+.+... ++.....+|.++.+|+.+.+..+. -.+.+....+.+|.+|+.+.+..+ ++..
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 4444455666663 4777766543 443556667777777777766542 123444555555666666666533 3334
Q ss_pred CCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccccCCCcE
Q 036588 110 IPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEK 189 (541)
Q Consensus 110 ~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~ 189 (541)
....|..+.+|+.+.+... ...+....|..+..|+.+.+..+ +......+|. ...|+.
T Consensus 129 ~~~aF~~c~~L~~i~lp~~--------------------~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~ 186 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEG--------------------VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQ 186 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT--------------------CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSE
T ss_pred hhhhhhhhcccccccccce--------------------eeeecccceecccccccccccce-eeEecccccc-ccceeE
Confidence 4455566666666444321 12233345566666666666543 2222223333 245666
Q ss_pred EEccCceeeeeccCCCCcCCCCEEEC
Q 036588 190 LDLQYNKLQGTIPYAGHLYQLQWLDL 215 (541)
Q Consensus 190 L~l~~~~~~~~~~~~~~~~~L~~L~l 215 (541)
+.+...-..-....+..+..++....
T Consensus 187 i~ip~~~~~i~~~af~~c~~l~~~~~ 212 (394)
T 4gt6_A 187 IHIPAKVTRIGTNAFSECFALSTITS 212 (394)
T ss_dssp EEECTTCCEECTTTTTTCTTCCEEEE
T ss_pred EEECCcccccccchhhhccccceecc
Confidence 66554432222223444445554443
No 127
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.52 E-value=3e-12 Score=123.84 Aligned_cols=276 Identities=13% Similarity=0.125 Sum_probs=136.7
Q ss_pred cccCCccccCCCCccEEEeccCc---ccccCCccccccCCCcEEEccCceeeeec-cCCCCcCCCCEEECCCCcccCCCC
Q 036588 150 YGEIPSDIANCSYLRILVLQFNN---FSGAIPKEISNLTKLEKLDLQYNKLQGTI-PYAGHLYQLQWLDLSDNQLSGSLP 225 (541)
Q Consensus 150 ~~~~~~~~~~~~~L~~L~l~~~~---i~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~ 225 (541)
..+...+|.+|.+|+.+.+..+. +......+|..+..|+.+.+..+ +.... ..+..+.+|+.+.+... +.....
T Consensus 76 t~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~ 153 (394)
T 4gt6_A 76 TEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVAD 153 (394)
T ss_dssp CEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECT
T ss_pred eEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeecc
Confidence 33445567777777777765542 34344456666667776666543 22222 23566667777766532 222334
Q ss_pred cccCCCCCccEEeccCCcccCcCChhhhccCCCCcEEEecCccccccCCCCCcCcccccEEEecccccCCCcccc-----
Q 036588 226 SFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPFLEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKE----- 300 (541)
Q Consensus 226 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----- 300 (541)
..+..+..|+.+.+..+- ..+....|.. .+|+.+.+.... ......+|..+.+++................
T Consensus 154 ~~F~~c~~L~~i~~~~~~--~~I~~~aF~~-~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~ 229 (394)
T 4gt6_A 154 GMFSYCYSLHTVTLPDSV--TAIEERAFTG-TALTQIHIPAKV-TRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSA 229 (394)
T ss_dssp TTTTTCTTCCEEECCTTC--CEECTTTTTT-CCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECT
T ss_pred cceeccccccccccccee--eEeccccccc-cceeEEEECCcc-cccccchhhhccccceecccccccccccceeecccc
Confidence 455566677777665542 2344445543 457777665432 2345566666666766665543322111000
Q ss_pred --------ccccCCccEEEeeCCccccccccccccCCCcEEeccCccccCCCCcccCCCCcceEEEcccCcCcCcCChhh
Q 036588 301 --------ISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDNQLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNV 372 (541)
Q Consensus 301 --------l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 372 (541)
......+..+.+...-..-....|..+..|+.+.+.+.... .....|.++++|+.+.+... ++ .++...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~-i~-~I~~~a 306 (394)
T 4gt6_A 230 NGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSR-IT-ELPESV 306 (394)
T ss_dssp TSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CC-EECTTT
T ss_pred cccccccccccccccceEEcCCcceEcccceeeecccccEEecccccce-ecCcccccccccccccCCCc-cc-ccCcee
Confidence 11112233333322111111122455555555555443222 33445555566666555432 22 345555
Q ss_pred hcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccc
Q 036588 373 FHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNR 436 (541)
Q Consensus 373 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 436 (541)
|.+|.+|+.+.+..+ +......+|.+|++|+.+.+..+ +..+...+|..|.+|+.+.+.++.
T Consensus 307 F~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 307 FAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred ecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 555666666665543 22233445556666666665432 444445555566666666555543
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.48 E-value=3.2e-14 Score=117.19 Aligned_cols=100 Identities=16% Similarity=0.133 Sum_probs=73.2
Q ss_pred CCCeEEEEecCCcce-eeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcE
Q 036588 20 TYRVTALNISGLNLT-VTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLES 98 (541)
Q Consensus 20 ~~~l~~L~l~~~~i~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 98 (541)
.+++++|+++++.++ +.+|..+..+++|++|++++|.+++. ..+.++++|++|++++|.+.+.+|..+.. +++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK-CPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH-CTTCCE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh-CCCCCE
Confidence 457889999999888 67788888889999999998888744 67788888888888888885545554444 888888
Q ss_pred eeccccccCcc-CCccCCCCCCCcE
Q 036588 99 LFLKSNMFHGK-IPSTLSSCKRLRE 122 (541)
Q Consensus 99 L~l~~~~~~~~-~~~~~~~l~~L~~ 122 (541)
|++++|.+++. .+..+..+++|++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~ 117 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKS 117 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCE
T ss_pred EECCCCcCCChHHHHHHhhCCCCCE
Confidence 88888877642 1234444444444
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.48 E-value=2.2e-13 Score=117.27 Aligned_cols=127 Identities=26% Similarity=0.314 Sum_probs=69.2
Q ss_pred cEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccch-hhhccCCCcEEEccccccccccCC-CcccCCcceEeccC
Q 036588 380 EELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPK-EISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSD 457 (541)
Q Consensus 380 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~ 457 (541)
+.++++++.+. .++..+. +++++|++++|.+....+. .+..+++|+.|++++|.+.+..+. +..+++|+.|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45666666553 3333322 2666666666666544433 355666666666666665544332 45555566666666
Q ss_pred CcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceec
Q 036588 458 NQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFY 510 (541)
Q Consensus 458 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 510 (541)
|.+....+..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCH-HHhhcCCCCCEEEeCCCCcc
Confidence 65555444455555556666666655544333 44555555566666555555
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.47 E-value=2.5e-14 Score=117.88 Aligned_cols=128 Identities=26% Similarity=0.198 Sum_probs=60.9
Q ss_pred ccCCeEEcccCCCC-CccchhhhccCCCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCCccccCCCCccEeeC
Q 036588 401 SYLRILVLKFNNFP-GAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDL 479 (541)
Q Consensus 401 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 479 (541)
+++++|++++|.+. ...+..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+...++..+..+++|++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 34444444444443 22333334444444444444444433 33444555555555555555434444444555555555
Q ss_pred CCCccccccCcccccCCcccceeeeccceecccCC---CCCCCccccceEEee
Q 036588 480 SSNRLSTELPTNVFHNLPFLEELYLSNNMFYGEIP---SDTPNCSYLRILVVQ 529 (541)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~ 529 (541)
++|.+.+......+..+++|+.|++++|++.+..+ ..+..+++|+.|+++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 55555331111334555556666666665553322 245555556555554
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.47 E-value=9.6e-16 Score=154.23 Aligned_cols=194 Identities=21% Similarity=0.216 Sum_probs=143.0
Q ss_pred CCCeEEEEecCCcceeeeCCcccCCCCCcEecccccc-------------cCCccchhhhhcCCCcEEE-eecCccCCCC
Q 036588 20 TYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNW-------------FSGSIPASIFNMSSLLSIN-FINNALFGEL 85 (541)
Q Consensus 20 ~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~~~~~ 85 (541)
.++++.|+++++.++ .+|+.++++++|+.|+++++. ..+..|..+.++++|+.|+ ++.+.+ ..+
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-~~L 425 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-DDL 425 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH-HHH
T ss_pred CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc-chh
Confidence 568889999999998 789999999999999997764 4556788889999999988 555432 111
Q ss_pred Ch------hhhh-hcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCcccc
Q 036588 86 PP------NFCN-HLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIA 158 (541)
Q Consensus 86 ~~------~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 158 (541)
+. .+.. ....|++|++++|.++. +|. ++.+++|++ |++++|.+. .+|..+.
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~-------------------L~Ls~N~l~-~lp~~~~ 483 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTH-------------------LDLSHNRLR-ALPPALA 483 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCE-------------------EECCSSCCC-CCCGGGG
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcE-------------------eecCccccc-ccchhhh
Confidence 11 1111 02368888888888874 554 777777777 566666666 5677888
Q ss_pred CCCCccEEEeccCcccccCCccccccCCCcEEEccCceeeee--ccCCCCcCCCCEEECCCCcccCCCCc---ccCCCCC
Q 036588 159 NCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGT--IPYAGHLYQLQWLDLSDNQLSGSLPS---FKFKMPL 233 (541)
Q Consensus 159 ~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~ 233 (541)
.+++|+.|++++|.+.. +| .++.+++|+.|++++|.+++. +..+..+++|+.|++++|.+.+..+. .+..+|+
T Consensus 484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~ 561 (567)
T 1dce_A 484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 561 (567)
T ss_dssp GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTT
T ss_pred cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcc
Confidence 88888888888888874 55 788888888898888888876 45578888899999988888754332 2233778
Q ss_pred ccEEec
Q 036588 234 LQFLDL 239 (541)
Q Consensus 234 L~~L~l 239 (541)
|+.|++
T Consensus 562 L~~L~l 567 (567)
T 1dce_A 562 VSSILT 567 (567)
T ss_dssp CSEEEC
T ss_pred cCccCC
Confidence 887753
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.47 E-value=1.3e-14 Score=150.72 Aligned_cols=202 Identities=18% Similarity=0.231 Sum_probs=104.4
Q ss_pred CccccceeeeCCCCCCeEEEEecCCcceeeeCCcccCCCCCcEecccc-----cccCCccchhhhhcCCCcEEEeecCcc
Q 036588 7 SVCNWTGITCDVRTYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSF-----NWFSGSIPASIFNMSSLLSINFINNAL 81 (541)
Q Consensus 7 ~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~-----~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (541)
....|.+.++. .++++.|++.++.+.. .+..+.....|+.+.+.. +.+. ..+..+..++.|++|+|++|.+
T Consensus 161 ~~~~~~~~~~s--~~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l 236 (727)
T 4b8c_D 161 PSGTATNSAVS--TPLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQI 236 (727)
T ss_dssp -----------------------------------------------------------------CCCCCCEEECTTSCC
T ss_pred ccccCCCceec--CCccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCC
Confidence 44567666554 4689999999999985 455554555555544433 3444 5677888999999999999998
Q ss_pred CCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCC
Q 036588 82 FGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCS 161 (541)
Q Consensus 82 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 161 (541)
..+|..++. +++|++|+|++|.++ .+|..++++++|++ |++++|.+. .+|..+..++
T Consensus 237 -~~l~~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~-------------------L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 237 -FNISANIFK-YDFLTRLYLNGNSLT-ELPAEIKNLSNLRV-------------------LDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp -SCCCGGGGG-CCSCSCCBCTTSCCS-CCCGGGGGGTTCCE-------------------EECTTSCCS-SCCSSGGGGT
T ss_pred -CCCChhhcC-CCCCCEEEeeCCcCc-ccChhhhCCCCCCE-------------------EeCcCCcCC-ccChhhcCCC
Confidence 488888886 999999999999988 77888888888877 566666666 5577888899
Q ss_pred CccEEEeccCcccccCCccccccCCCcEEEccCceeeeeccC-CCCc-CCCCEEECCCCcccCCCCcccCCCCCccEEec
Q 036588 162 YLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQGTIPY-AGHL-YQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDL 239 (541)
Q Consensus 162 ~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 239 (541)
+|+.|++++|.+. .+|..|+.+++|+.|++++|.+.+..+. +... .....+++++|.+....|. .|+.|++
T Consensus 294 ~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l 366 (727)
T 4b8c_D 294 QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEI 366 (727)
T ss_dssp TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C------
T ss_pred CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEe
Confidence 9999999999887 6777888999999999999988765443 2211 1112355666666544443 4555556
Q ss_pred cCC
Q 036588 240 SSN 242 (541)
Q Consensus 240 ~~~ 242 (541)
+.+
T Consensus 367 ~~n 369 (727)
T 4b8c_D 367 NTD 369 (727)
T ss_dssp ---
T ss_pred ecc
Confidence 555
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.44 E-value=5.9e-13 Score=113.11 Aligned_cols=122 Identities=21% Similarity=0.286 Sum_probs=89.9
Q ss_pred ccccceeeeCCC---------CCCeEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeec
Q 036588 8 VCNWTGITCDVR---------TYRVTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFIN 78 (541)
Q Consensus 8 ~~~~~~~~~~~~---------~~~l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 78 (541)
.|.|.++.|... ..++++|+++++.+++..+..|+.+++|++|++++|.++...+..+.++++|++|++++
T Consensus 6 ~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp EEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 467888777432 24788888888888876667778888888888888888755555677888888888888
Q ss_pred CccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCcc
Q 036588 79 NALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDF 130 (541)
Q Consensus 79 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~ 130 (541)
|.+. .++...+..+++|++|++++|.++...+..+..+++|+++++++|++
T Consensus 86 N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 86 NKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCcc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 8874 55555544488888888888888765555667788888877766654
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.44 E-value=5.1e-13 Score=114.95 Aligned_cols=128 Identities=22% Similarity=0.250 Sum_probs=78.0
Q ss_pred EEEEecCCcceeeeCCcccCCCCCcEecccccccCCccch-hhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeecc
Q 036588 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPA-SIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLK 102 (541)
Q Consensus 24 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 102 (541)
+++++++++++ .+|..+.. ++++|++++|.+++..+. .+.++++|++|++++|.+.+..|..+.. +++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG-ASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-CTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC-cccCCEEECC
Confidence 46667777776 45554433 777777777777633333 3667777777777777764444444444 7777777777
Q ss_pred ccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCccc
Q 036588 103 SNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFS 174 (541)
Q Consensus 103 ~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 174 (541)
+|+++...+..+..+++|++ |++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~-------------------L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKT-------------------LNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCE-------------------EECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcCCccCHHHhcCCCCCCE-------------------EECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 77666555555555555555 444445555555555666666666666666554
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.43 E-value=9.6e-13 Score=113.14 Aligned_cols=127 Identities=24% Similarity=0.262 Sum_probs=88.4
Q ss_pred EEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccc
Q 036588 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKS 103 (541)
Q Consensus 24 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 103 (541)
+++++++++++ .+|..+. ++|++|++++|.++ .+|..|.++++|++|++++|.+. .++...+.++++|++|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECCC
Confidence 46777888887 4555443 57888888888887 77788888888888888888874 44444444488888888888
Q ss_pred cccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCccc
Q 036588 104 NMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFS 174 (541)
Q Consensus 104 ~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 174 (541)
|.++...+..|..+++|++ |++++|.+....+..|..+++|+.|++.+|.+.
T Consensus 88 N~l~~i~~~~f~~l~~L~~-------------------L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRL-------------------LSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCE-------------------EECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCE-------------------EECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 8887666666777776666 444445555444445666677777777766553
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.41 E-value=1.6e-12 Score=110.36 Aligned_cols=128 Identities=25% Similarity=0.282 Sum_probs=76.1
Q ss_pred ccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCC-CcccCCcceEeccC
Q 036588 379 LEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSD 457 (541)
Q Consensus 379 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~ 457 (541)
.+.+++.++.+. .++.. ..++|++|++++|.+....+..+..+++|+.|++++|.+....+. +..+++|+.|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTT--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCC--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 355666666654 22222 235677777777776655555566667777777777666544433 45566666666666
Q ss_pred CcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceec
Q 036588 458 NQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFY 510 (541)
Q Consensus 458 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 510 (541)
|.+....+..+..+++|++|++++|.+. .++...+..+++|+.|++++|++.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCee
Confidence 6666544445556666666666666663 344444555666666666666655
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.40 E-value=2.5e-13 Score=115.19 Aligned_cols=130 Identities=18% Similarity=0.095 Sum_probs=62.3
Q ss_pred CCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCC-CcccCCcceE
Q 036588 375 NLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWL 453 (541)
Q Consensus 375 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L 453 (541)
.+++|+.|++.+|.+.. ++......++|++|++++|.+... ..+..+++|+.|++++|.+....+. +..+++|+.|
T Consensus 17 ~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp CTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 45556666666665542 222112223555566655555532 3455555555555555555433323 2445555555
Q ss_pred eccCCcCCCCCCc--cccCCCCccEeeCCCCccccccCcc---cccCCcccceeeecccee
Q 036588 454 DLSDNQLSGSLPS--FKFKMPLLQFLDLSSNRLSTELPTN---VFHNLPFLEELYLSNNMF 509 (541)
Q Consensus 454 ~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~ 509 (541)
++++|.+. .++. .+..+++|+.|++++|++. .++.. .+..+++|+.|++++|..
T Consensus 94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 94 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 55555554 2222 3444555555555555552 23322 244455555555555443
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.39 E-value=3.3e-12 Score=109.77 Aligned_cols=127 Identities=21% Similarity=0.225 Sum_probs=95.9
Q ss_pred cEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEEecCC
Q 036588 48 QTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSL 127 (541)
Q Consensus 48 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~ 127 (541)
++++++++.++ .+|..+. ++|++|++++|.+ +.+|..+.. +++|++|++++|.++...+..|..+++|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i-~~ip~~~~~-l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~----- 82 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQF-TLVPKELSN-YKHLTLIDLSNNRISTLSNQSFSNMTQLLT----- 82 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCC-CSCCGGGGG-CTTCCEEECCSSCCCCCCTTTTTTCTTCCE-----
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcC-chhHHHhhc-ccCCCEEECCCCcCCEeCHhHccCCCCCCE-----
Confidence 67888888887 7776553 5889999999888 477765555 889999999888888777777877777777
Q ss_pred CccccccccCcceEEEecCccccccCCccccCCCCccEEEeccCcccccCCccccccCCCcEEEccCceee
Q 036588 128 NDFFWDHTKRNWQQLYLSKNMFYGEIPSDIANCSYLRILVLQFNNFSGAIPKEISNLTKLEKLDLQYNKLQ 198 (541)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~ 198 (541)
|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 83 --------------L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 83 --------------LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp --------------EECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred --------------EECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 555566666666667788888888888888887555556777777888877777654
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.38 E-value=1.2e-13 Score=143.54 Aligned_cols=116 Identities=29% Similarity=0.447 Sum_probs=54.5
Q ss_pred cccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccC
Q 036588 346 SFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLT 425 (541)
Q Consensus 346 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 425 (541)
..+..++.|+.|++++|.+. .++...+ .+++|+.|++++|.+. .++..+..+++|++|++++|.++ ..|..+..++
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp ----CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred hhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 33444455555555555544 3444433 4555555555555544 44444455555555555555554 3344455555
Q ss_pred CCcEEEccccccccccCCCcccCCcceEeccCCcCCCCCC
Q 036588 426 KLEKLDLQYNRLQGTIPYAGHLFQLQWLDLSDNQLSGSLP 465 (541)
Q Consensus 426 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 465 (541)
+|+.|++++|.+......+..+++|+.|++++|.+...++
T Consensus 294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred CCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCCh
Confidence 5555555555544332234444555555555555443333
No 140
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.33 E-value=2.4e-10 Score=110.00 Aligned_cols=314 Identities=10% Similarity=-0.009 Sum_probs=148.9
Q ss_pred cccccCCCcEEEccCceeeeeccC-CCCcCCCCEEECCCCcccCCCCcccCCCCCccEEeccCCcccCcCChhhhccCCC
Q 036588 180 EISNLTKLEKLDLQYNKLQGTIPY-AGHLYQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSAELPTNVFHNLPF 258 (541)
Q Consensus 180 ~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 258 (541)
++....+|+++.+... ++..... +..+.+|+.+.+..+ ++.....++..+ +|+.+.+..+- ..+....|..+ +
T Consensus 41 ~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~l--~~I~~~aF~~~-~ 114 (379)
T 4h09_A 41 WYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMERV--KKFGDYVFQGT-D 114 (379)
T ss_dssp TGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTTC--CEECTTTTTTC-C
T ss_pred ccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCcee--eEeccceeccC-C
Confidence 4555677888888653 4444443 777888888888643 443444455554 56666665431 24455566654 6
Q ss_pred CcEEEecCccccccCCCCCcCcccccEEEecccccCCCccccccccCCccEEEeeCCccccccccccccCCCcEEeccCc
Q 036588 259 LEELYLSNNMFYGEIPSDTANCSYLRILVLRFNNFSGAIPKEISNLTKLEKLDLQYNRLQGTILYVGHLLQLQWLDLSDN 338 (541)
Q Consensus 259 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 338 (541)
|+.+.+... +.......|..+ +++.+.+..+ +.......+..+.+++.+.+..................
T Consensus 115 L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------- 183 (379)
T 4h09_A 115 LDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKN-------- 183 (379)
T ss_dssp CSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETT--------
T ss_pred cccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccc--------
Confidence 888877654 233445555554 4666655443 22233345566777777776654322111110000000
Q ss_pred cccCCCCcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccc
Q 036588 339 QLSGSLPSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIP 418 (541)
Q Consensus 339 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 418 (541)
......+..+..+..+.+..... .+....+..+..|+.+.+...- .......+.++..|+.+.+..+ +..+..
T Consensus 184 ---~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~~-~~i~~~~f~~~~~L~~i~lp~~-v~~I~~ 256 (379)
T 4h09_A 184 ---KTILESYPAAKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSGV-TTLGDGAFYGMKALDEIAIPKN-VTSIGS 256 (379)
T ss_dssp ---SSEEEECCTTCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTTC-CEECTTTTTTCSSCCEEEECTT-CCEECT
T ss_pred ---cceecccccccccccccccccee--EEeecccccccccceeeeccce-eEEccccccCCccceEEEcCCC-ccEeCc
Confidence 00011122223333333322211 1222333344445555444321 1122334445555555555433 333344
Q ss_pred hhhhccCCCcEEEccccccccccC-CCcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCc
Q 036588 419 KEISNLTKLEKLDLQYNRLQGTIP-YAGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLP 497 (541)
Q Consensus 419 ~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 497 (541)
.+|..+.+|+.+.+... +..... .+..+++|+.+.+.++.+..+...+|.+|.+|+.+.+..+ + ..+....|.+|.
T Consensus 257 ~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l-~~I~~~aF~~C~ 333 (379)
T 4h09_A 257 FLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-L-KTIQVYAFKNCK 333 (379)
T ss_dssp TTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-C-CEECTTTTTTCT
T ss_pred cccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-c-cEEHHHHhhCCC
Confidence 44555555555555332 111111 1444555555555554444444455555566666665432 2 334445555666
Q ss_pred ccceeeeccceecccCCCCCCCcc
Q 036588 498 FLEELYLSNNMFYGEIPSDTPNCS 521 (541)
Q Consensus 498 ~L~~L~l~~~~~~~~~~~~~~~~~ 521 (541)
+|+.+.+..+ +..+...+|..+.
T Consensus 334 ~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 334 ALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TCCCCCCCTT-CCEECTTTTTTSS
T ss_pred CCCEEEECCc-cCEEchhHhhCCC
Confidence 6666655433 3334444555553
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.33 E-value=2.8e-12 Score=108.75 Aligned_cols=134 Identities=19% Similarity=0.152 Sum_probs=102.1
Q ss_pred cCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCC
Q 036588 348 KFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKL 427 (541)
Q Consensus 348 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 427 (541)
+..+++|+.|++++|.++ .++ ......++|+.|++++|.+.+. ..+..+++|++|++++|.+....+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhH-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 345677778888877776 333 2333445888888888887654 577888899999999998886655667889999
Q ss_pred cEEEccccccccccC--CCcccCCcceEeccCCcCCCCCCc----cccCCCCccEeeCCCCcccc
Q 036588 428 EKLDLQYNRLQGTIP--YAGHLFQLQWLDLSDNQLSGSLPS----FKFKMPLLQFLDLSSNRLST 486 (541)
Q Consensus 428 ~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~ 486 (541)
+.|++++|.+..... .+..+++|+.|++++|++.. .+. .+..+++|+.|++++|....
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 999999998865444 46778899999999998874 444 47889999999999987643
No 142
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.31 E-value=3.4e-10 Score=108.92 Aligned_cols=78 Identities=12% Similarity=0.048 Sum_probs=42.9
Q ss_pred CcccCCCCcceEEEcccCcCcCcCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhcc
Q 036588 345 PSFKFNMPLLQFLDLSSNRLSVELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNL 424 (541)
Q Consensus 345 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 424 (541)
...|..|++|+.+.+.++.++ .+....|.+|.+|+.+.+..+ +......+|.+|++|+.+.+..+ +..+...+|..|
T Consensus 279 ~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 279 YLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp TTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred ccccccccccccccccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 344555566666666555544 455556666666666666543 22234455666666666666543 444445556555
Q ss_pred C
Q 036588 425 T 425 (541)
Q Consensus 425 ~ 425 (541)
.
T Consensus 356 ~ 356 (379)
T 4h09_A 356 S 356 (379)
T ss_dssp S
T ss_pred C
Confidence 4
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.30 E-value=4e-14 Score=122.77 Aligned_cols=128 Identities=24% Similarity=0.252 Sum_probs=70.4
Q ss_pred CeEEEEecCCcceeeeCC------cccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCC
Q 036588 22 RVTALNISGLNLTVTIPS------ELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSN 95 (541)
Q Consensus 22 ~l~~L~l~~~~i~~~~~~------~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~ 95 (541)
.++.++++++.+++..|. .|+.+++|++|++++|.++ .+| .+.++++|++|++++|.+. .+|..+.. +++
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~-~~~ 94 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAV-ADT 94 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH-HHH
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc-ccccCCCCCEEECCCCCcc-cccchhhc-CCc
Confidence 344444444444444443 6667777777777777666 355 6666777777777777663 55554443 667
Q ss_pred CcEeeccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEEecCccccccCC-ccccCCCCccEEEeccCccc
Q 036588 96 LESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLYLSKNMFYGEIP-SDIANCSYLRILVLQFNNFS 174 (541)
Q Consensus 96 L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~ 174 (541)
|++|++++|+++. ++ .+..+++|++ |++++|.+.+... ..+..+++|+.|++++|.+.
T Consensus 95 L~~L~L~~N~l~~-l~-~~~~l~~L~~-------------------L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 95 LEELWISYNQIAS-LS-GIEKLVNLRV-------------------LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp CSEEEEEEEECCC-HH-HHHHHHHSSE-------------------EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CCEEECcCCcCCc-CC-ccccCCCCCE-------------------EECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 7777777666653 22 2333333333 4444444443211 23455555666666655554
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.25 E-value=2.5e-14 Score=124.06 Aligned_cols=111 Identities=25% Similarity=0.206 Sum_probs=59.9
Q ss_pred hhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCCCcccCCcc
Q 036588 372 VFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPYAGHLFQLQ 451 (541)
Q Consensus 372 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~ 451 (541)
.+..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+. ..+..+..+++|+.|++++|++.+. +.+..+++|+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~~~~~l~~L~ 118 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-SGIEKLVNLR 118 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-HHHHHHHHSS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-CccccCCCCC
Confidence 34456666666666666553 33 5555666666666666555 2344445556666666666655532 2344455566
Q ss_pred eEeccCCcCCCCCC-ccccCCCCccEeeCCCCcccc
Q 036588 452 WLDLSDNQLSGSLP-SFKFKMPLLQFLDLSSNRLST 486 (541)
Q Consensus 452 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~ 486 (541)
.|++++|.+..... ..+..+++|++|++++|++.+
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred EEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 66666555543111 234455555555555555533
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.23 E-value=4e-11 Score=100.65 Aligned_cols=105 Identities=24% Similarity=0.283 Sum_probs=89.1
Q ss_pred eEEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeecc
Q 036588 23 VTALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLK 102 (541)
Q Consensus 23 l~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 102 (541)
.++++++++.++. +|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+ +.+|...+.++++|++|+++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL-TVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCc-CccChhhccCCCCCCEEECC
Confidence 3578888999984 666553 8999999999999977788999999999999999998 46777766669999999999
Q ss_pred ccccCccCCccCCCCCCCcEEecCCCccc
Q 036588 103 SNMFHGKIPSTLSSCKRLRETSLSLNDFF 131 (541)
Q Consensus 103 ~~~~~~~~~~~~~~l~~L~~l~~~~~~~~ 131 (541)
+|+++...+..|.++++|+++++++|++.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 99999777778999999999888777653
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.21 E-value=5.4e-11 Score=100.19 Aligned_cols=104 Identities=22% Similarity=0.285 Sum_probs=89.6
Q ss_pred EEEEecCCcceeeeCCcccCCCCCcEecccccccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeeccc
Q 036588 24 TALNISGLNLTVTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKS 103 (541)
Q Consensus 24 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 103 (541)
+.++++++.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+ +.+|..++.++++|++|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL-TAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCC-CccChhHhCCcchhhEEECCC
Confidence 68999999998 5676664 8999999999999977788999999999999999998 567777766699999999999
Q ss_pred cccCccCCccCCCCCCCcEEecCCCccc
Q 036588 104 NMFHGKIPSTLSSCKRLRETSLSLNDFF 131 (541)
Q Consensus 104 ~~~~~~~~~~~~~l~~L~~l~~~~~~~~ 131 (541)
|++....+..+..+++|+++++++|++.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 9999766667999999999888777653
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.19 E-value=9.8e-11 Score=98.25 Aligned_cols=104 Identities=29% Similarity=0.302 Sum_probs=50.3
Q ss_pred CCeEEcccCCCCCccchhhhccCCCcEEEccccccccccCC-CcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCC
Q 036588 403 LRILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSS 481 (541)
Q Consensus 403 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 481 (541)
.+.++++++.+... |..+ .++|+.|++++|.+....+. +..+++|+.|++++|.+....+..+..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~i-p~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASV-PTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCcc-CccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 35566666655532 2222 14555555555555444332 44455555555555555544444444555555555555
Q ss_pred CccccccCcccccCCcccceeeeccceec
Q 036588 482 NRLSTELPTNVFHNLPFLEELYLSNNMFY 510 (541)
Q Consensus 482 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 510 (541)
|.+. .++...+..+++|+.|++++|++.
T Consensus 88 N~l~-~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLK-SIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccC-EeCHHHhcCCCCCCEEEeCCCCCC
Confidence 5542 233334444555555555555544
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.18 E-value=1e-10 Score=98.44 Aligned_cols=103 Identities=29% Similarity=0.385 Sum_probs=53.5
Q ss_pred CeEEcccCCCCCccchhhhccCCCcEEEccccccccccCC-CcccCCcceEeccCCcCCCCCCccccCCCCccEeeCCCC
Q 036588 404 RILVLKFNNFPGAIPKEISNLTKLEKLDLQYNRLQGTIPY-AGHLFQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSN 482 (541)
Q Consensus 404 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 482 (541)
+.++++++.+.. .|..+. ++|+.|++++|.+....+. +..+++|+.|++++|.+....+..+..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 456666665543 222222 5556666666655544332 445555555555555555443344455555555555555
Q ss_pred ccccccCcccccCCcccceeeeccceec
Q 036588 483 RLSTELPTNVFHNLPFLEELYLSNNMFY 510 (541)
Q Consensus 483 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 510 (541)
.+. .++...+..+++|+.|++++|++.
T Consensus 92 ~l~-~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLK-SIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCC-CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccc-eeCHHHhccccCCCEEEeCCCCcc
Confidence 552 244344555555555555555554
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.09 E-value=9.5e-12 Score=118.38 Aligned_cols=86 Identities=22% Similarity=0.222 Sum_probs=57.0
Q ss_pred CcceEEEecCcccccc----CCccccCCCCccEEEeccCcccccC----CccccccCCCcEEEccCceeeeec-----cC
Q 036588 137 RNWQQLYLSKNMFYGE----IPSDIANCSYLRILVLQFNNFSGAI----PKEISNLTKLEKLDLQYNKLQGTI-----PY 203 (541)
Q Consensus 137 ~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~i~~~~----~~~l~~l~~L~~L~l~~~~~~~~~-----~~ 203 (541)
++|+.|++++|.+.+. ++..+..+++|++|++++|.+.+.. +..+...++|++|++++|.+++.. ..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 4566677777766542 2334466778888888888776432 344566678888888888776422 12
Q ss_pred CCCcCCCCEEECCCCcccC
Q 036588 204 AGHLYQLQWLDLSDNQLSG 222 (541)
Q Consensus 204 ~~~~~~L~~L~l~~~~~~~ 222 (541)
+...++|++|++++|.+..
T Consensus 235 L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 235 AREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHCSSCCEEECTTSSCCH
T ss_pred HHhCCCCCEEeccCCCCCH
Confidence 4456788888888887754
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.06 E-value=3.6e-12 Score=121.32 Aligned_cols=155 Identities=17% Similarity=0.101 Sum_probs=79.7
Q ss_pred CCCcEecccccccCCccchhhhhc-----CCCcEEEeecCccCCCCChhhhhhcCCCcEeeccccccCccCCccC-----
Q 036588 45 SSLQTLDLSFNWFSGSIPASIFNM-----SSLLSINFINNALFGELPPNFCNHLSNLESLFLKSNMFHGKIPSTL----- 114 (541)
Q Consensus 45 ~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~----- 114 (541)
++|+.|++++|.++......+... ++|++|++++|.+.......+...+++|++|++++|.+++.....+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 344455555554443222222222 3455555555544322223333334455555555554443222222
Q ss_pred CCCCCCcEEecCCCccc---------cccccCcceEEEecCccccccC----CccccCCCCccEEEeccCcccccC----
Q 036588 115 SSCKRLRETSLSLNDFF---------WDHTKRNWQQLYLSKNMFYGEI----PSDIANCSYLRILVLQFNNFSGAI---- 177 (541)
Q Consensus 115 ~~l~~L~~l~~~~~~~~---------~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~i~~~~---- 177 (541)
...++|++|++++|.+. .....++|++|++++|.+.+.. ...+..+++|+.|++++|.+.+..
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 22344555555555442 1123455666777777665432 344566778888888888876432
Q ss_pred CccccccCCCcEEEccCceeee
Q 036588 178 PKEISNLTKLEKLDLQYNKLQG 199 (541)
Q Consensus 178 ~~~l~~l~~L~~L~l~~~~~~~ 199 (541)
+..+...++|++|++++|.+.+
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHhCCCCCEEeccCCCCCH
Confidence 2334456788888888887764
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.83 E-value=9.2e-09 Score=97.55 Aligned_cols=101 Identities=17% Similarity=0.149 Sum_probs=77.1
Q ss_pred EecCC-cceeeeCCcccCCCCCcEecccc-cccCCccchhhhhcCCCcEEEeecCccCCCCChhhhhhcCCCcEeecccc
Q 036588 27 NISGL-NLTVTIPSELGNLSSLQTLDLSF-NWFSGSIPASIFNMSSLLSINFINNALFGELPPNFCNHLSNLESLFLKSN 104 (541)
Q Consensus 27 ~l~~~-~i~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 104 (541)
+.++. +++ .+|. |..+++|+.|+|++ |.+++..+..|.++++|++|+|++|.+.+ ++...+.++++|++|+|++|
T Consensus 14 ~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 14 RCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp ECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEECCSS
T ss_pred EcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCEEeCCCC
Confidence 44455 676 4677 99999999999996 88886666789999999999999998854 44444444999999999999
Q ss_pred ccCccCCccCCCCCCCcEEecCCCccc
Q 036588 105 MFHGKIPSTLSSCKRLRETSLSLNDFF 131 (541)
Q Consensus 105 ~~~~~~~~~~~~l~~L~~l~~~~~~~~ 131 (541)
++....+..+..+. |++|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 99866555666555 888777776654
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.75 E-value=2.8e-08 Score=94.20 Aligned_cols=102 Identities=25% Similarity=0.241 Sum_probs=57.2
Q ss_pred EEcccC-cCcCcCChhhhcCCCCccEEEccC-cccccCCCcCCcCCccCCeEEcccCCCCCccchhhhccCCCcEEEccc
Q 036588 357 LDLSSN-RLSVELPTNVFHNLPFLEELYLSN-NMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEISNLTKLEKLDLQY 434 (541)
Q Consensus 357 L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 434 (541)
++.+++ .++ .+|. +..+++|+.|++++ |.+....+..|..+++|+.|++++|.+....+..|..+++|+.|+|++
T Consensus 13 v~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 455554 454 4444 44556666666664 665544445566666666666666666655555666666666666666
Q ss_pred cccccccCCCcccCCcceEeccCCcCC
Q 036588 435 NRLQGTIPYAGHLFQLQWLDLSDNQLS 461 (541)
Q Consensus 435 ~~~~~~~~~~~~~~~L~~L~l~~~~~~ 461 (541)
|++....+.......|+.|++.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CccceeCHHHcccCCceEEEeeCCCcc
Confidence 666544433222222666666665554
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.64 E-value=5.9e-09 Score=98.20 Aligned_cols=139 Identities=21% Similarity=0.302 Sum_probs=75.6
Q ss_pred hhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEcccCCCCCccchhhh--ccCCCcEEEcccc--ccc------cc
Q 036588 371 NVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKFNNFPGAIPKEIS--NLTKLEKLDLQYN--RLQ------GT 440 (541)
Q Consensus 371 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~--~~~------~~ 440 (541)
..+..+|+|+.|.+.++.-. .++. + ..++|++|++..|.+.......+. .+++|+.|+|+.+ ... ..
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 34456677777777665211 1221 2 267778888777766544444443 5777887777531 111 01
Q ss_pred cCCC--cccCCcceEeccCCcCCCCCCccc---cCCCCccEeeCCCCccccccC---cccccCCcccceeeeccceeccc
Q 036588 441 IPYA--GHLFQLQWLDLSDNQLSGSLPSFK---FKMPLLQFLDLSSNRLSTELP---TNVFHNLPFLEELYLSNNMFYGE 512 (541)
Q Consensus 441 ~~~~--~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~ 512 (541)
.+.+ ..+++|+.|++.+|.+.+.....+ ..+|+|++|+++.|.+.+... ...+.++++|+.|++++|.+++.
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 1111 246777777777766553222111 246677777777776633211 01234466777777777776644
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.64 E-value=6.5e-09 Score=97.91 Aligned_cols=64 Identities=17% Similarity=0.233 Sum_probs=45.9
Q ss_pred CCCCccEEEeccCcccccCCcccc---ccCCCcEEEccCceeeee-----ccCCCCcCCCCEEECCCCcccC
Q 036588 159 NCSYLRILVLQFNNFSGAIPKEIS---NLTKLEKLDLQYNKLQGT-----IPYAGHLYQLQWLDLSDNQLSG 222 (541)
Q Consensus 159 ~~~~L~~L~l~~~~i~~~~~~~l~---~l~~L~~L~l~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~ 222 (541)
.+|+|+.|++.+|.+.+..+..+. .+++|++|+++.|.+.+. ...+..+++|+.|++++|.+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 578999999988887654333333 467899999988877652 2224567899999998887653
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.51 E-value=7.6e-09 Score=85.14 Aligned_cols=85 Identities=8% Similarity=-0.026 Sum_probs=56.5
Q ss_pred CCcceEeccCCcCCCCCCccccCCCCccEeeCCCCccccccCcccccC----Ccccceeeeccce-ecccCCCCCCCccc
Q 036588 448 FQLQWLDLSDNQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHN----LPFLEELYLSNNM-FYGEIPSDTPNCSY 522 (541)
Q Consensus 448 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~-~~~~~~~~~~~~~~ 522 (541)
..|+.|++++|.+++.....+..+++|++|++++|...++.....+.. +++|++|++++|. +++.....++.+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356777777776666555566677777777777776434333233443 2467888888775 77666666777788
Q ss_pred cceEEeeccc
Q 036588 523 LRILVVQFNN 532 (541)
Q Consensus 523 L~~L~l~~~~ 532 (541)
|+.|++++|+
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 8888888875
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.26 E-value=1.8e-07 Score=77.01 Aligned_cols=81 Identities=11% Similarity=-0.000 Sum_probs=34.2
Q ss_pred CCcEecccccccCCccchhhhhcCCCcEEEeecCc-cCCCCChhhhh---hcCCCcEeeccccc-cCccCCccCCCCCCC
Q 036588 46 SLQTLDLSFNWFSGSIPASIFNMSSLLSINFINNA-LFGELPPNFCN---HLSNLESLFLKSNM-FHGKIPSTLSSCKRL 120 (541)
Q Consensus 46 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~---~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L 120 (541)
+|+.||++++.+++.....+.++++|++|++++|. +++.....+.. .+++|++|++++|. +++.....+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 44555555544444444444445555555555543 22211222222 02345555555542 443333334444444
Q ss_pred cEEecC
Q 036588 121 RETSLS 126 (541)
Q Consensus 121 ~~l~~~ 126 (541)
++|+++
T Consensus 142 ~~L~L~ 147 (176)
T 3e4g_A 142 KYLFLS 147 (176)
T ss_dssp CEEEEE
T ss_pred CEEECC
Confidence 443333
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.16 E-value=3.4e-07 Score=77.58 Aligned_cols=66 Identities=17% Similarity=0.167 Sum_probs=32.8
Q ss_pred hcCCCCccEEEccCc-ccccC----CCcCCcCCccCCeEEcccCCCCCccc----hhhhccCCCcEEEccccccc
Q 036588 373 FHNLPFLEELYLSNN-MFYGE----IPSDTQNCSYLRILVLKFNNFPGAIP----KEISNLTKLEKLDLQYNRLQ 438 (541)
Q Consensus 373 ~~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~ 438 (541)
+...++|++|++++| .+... +...+...++|++|++++|.+..... ..+...++|++|++++|.+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 334555555555555 44321 12233445566666666666554222 22333455666666665554
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.13 E-value=3.4e-07 Score=77.62 Aligned_cols=115 Identities=18% Similarity=0.102 Sum_probs=64.2
Q ss_pred CCcCCccCCeEEcccC-CCCCcc----chhhhccCCCcEEEccccccccccC-----CCcccCCcceEeccCCcCCCC--
Q 036588 396 DTQNCSYLRILVLKFN-NFPGAI----PKEISNLTKLEKLDLQYNRLQGTIP-----YAGHLFQLQWLDLSDNQLSGS-- 463 (541)
Q Consensus 396 ~~~~~~~L~~L~l~~~-~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~-- 463 (541)
.+...++|++|++++| .+.... ...+...++|++|++++|.+..... .+...++|++|++++|.+.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 4456677888888887 766532 2334456777777777777653211 123445666777776666542
Q ss_pred --CCccccCCCCccEeeC--CCCccccccC---cccccCCcccceeeeccceec
Q 036588 464 --LPSFKFKMPLLQFLDL--SSNRLSTELP---TNVFHNLPFLEELYLSNNMFY 510 (541)
Q Consensus 464 --~~~~~~~~~~L~~L~l--~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~ 510 (541)
+...+...++|++|++ ++|.+..... ...+...++|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2334445566666666 5565532110 023334456666666666554
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.02 E-value=4.6e-06 Score=74.20 Aligned_cols=64 Identities=25% Similarity=0.356 Sum_probs=29.8
Q ss_pred cCCCCCcEecccccccCC--ccchhhhhcCCCcEEEeecCccCCCCChhhhhhcC--CCcEeeccccccCc
Q 036588 42 GNLSSLQTLDLSFNWFSG--SIPASIFNMSSLLSINFINNALFGELPPNFCNHLS--NLESLFLKSNMFHG 108 (541)
Q Consensus 42 ~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~ 108 (541)
.++++|+.|+|++|.+++ .+|..+..+++|++|+|++|.+.+. ..+.. +. +|++|++++|.+..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~-l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDK-IKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGG-GTTSCCSEEECTTSTTGG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhh-cccCCcceEEccCCcCcc
Confidence 344555555555555543 2334445555555555555554221 11211 22 55555555555543
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.91 E-value=2.8e-06 Score=75.60 Aligned_cols=83 Identities=24% Similarity=0.266 Sum_probs=48.2
Q ss_pred hhcCCCcEEEeecCccCC--CCChhhhhhcCCCcEeeccccccCccCCccCCCCCCCcEEecCCCccccccccCcceEEE
Q 036588 66 FNMSSLLSINFINNALFG--ELPPNFCNHLSNLESLFLKSNMFHGKIPSTLSSCKRLRETSLSLNDFFWDHTKRNWQQLY 143 (541)
Q Consensus 66 ~~l~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~ 143 (541)
.++++|++|+|++|.+.+ .++..+. .+++|++|+|++|++.+. ..+..+. .. +|++|+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~-~l~~L~~L~Ls~N~i~~~--~~l~~l~----------------~l-~L~~L~ 226 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQ-KAPNLKILNLSGNELKSE--RELDKIK----------------GL-KLEELW 226 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHH-HSTTCCEEECTTSCCCSG--GGGGGGT----------------TS-CCSEEE
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHh-hCCCCCEEECCCCccCCc--hhhhhcc----------------cC-CcceEE
Confidence 456777777777777643 2223333 377777777777777643 2222222 01 445566
Q ss_pred ecCccccccCC-------ccccCCCCccEEEe
Q 036588 144 LSKNMFYGEIP-------SDIANCSYLRILVL 168 (541)
Q Consensus 144 l~~~~~~~~~~-------~~~~~~~~L~~L~l 168 (541)
+++|.+.+..+ ..+..+|+|+.|+-
T Consensus 227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp CTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred ccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 66666654333 23567888888863
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.46 E-value=0.00089 Score=56.12 Aligned_cols=67 Identities=16% Similarity=0.130 Sum_probs=34.0
Q ss_pred hhcCCCCccEEEccCc-ccccC----CCcCCcCCccCCeEEcccCCCCCccc----hhhhccCCCcEEEccccccc
Q 036588 372 VFHNLPFLEELYLSNN-MFYGE----IPSDTQNCSYLRILVLKFNNFPGAIP----KEISNLTKLEKLDLQYNRLQ 438 (541)
Q Consensus 372 ~~~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~ 438 (541)
....-+.|++|++.++ .+... +...+..-+.|+.|++++|++.+... +.+..-+.|+.|+|++|.+.
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3334566666666654 44321 22233444566666666666654222 23334455666666665554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.28 E-value=0.00091 Score=56.04 Aligned_cols=82 Identities=12% Similarity=0.086 Sum_probs=35.4
Q ss_pred CccCCeEEcccC-CCCCc----cchhhhccCCCcEEEccccccccccCC-----CcccCCcceEeccCCcCCCC----CC
Q 036588 400 CSYLRILVLKFN-NFPGA----IPKEISNLTKLEKLDLQYNRLQGTIPY-----AGHLFQLQWLDLSDNQLSGS----LP 465 (541)
Q Consensus 400 ~~~L~~L~l~~~-~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~----~~ 465 (541)
-+.|++|+++++ ++... ..+.+..-..|+.|+|++|.+.+.... +..-+.|+.|+|++|.+.+. +.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 345555555543 44321 122333345555555555554432211 12334455555555555431 11
Q ss_pred ccccCCCCccEeeCCC
Q 036588 466 SFKFKMPLLQFLDLSS 481 (541)
Q Consensus 466 ~~~~~~~~L~~L~l~~ 481 (541)
.++..-..|++|++++
T Consensus 120 ~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHTTTTCCCSEEECCC
T ss_pred HHHhhCCceeEEECCC
Confidence 2233344455555544
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.04 E-value=0.026 Score=43.91 Aligned_cols=56 Identities=30% Similarity=0.341 Sum_probs=41.9
Q ss_pred eEeccCCcCC-CCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccceec
Q 036588 452 WLDLSDNQLS-GSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNNMFY 510 (541)
Q Consensus 452 ~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 510 (541)
.++.++..++ ..+|..+ .++|++|+|++|.+ +.++...|..+++|+.|+|.+|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNL-TALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCC-SSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcC-CccChhhhhhccccCEEEecCCCee
Confidence 6677777665 2444332 34689999999998 5577788888899999999999876
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.16 E-value=0.072 Score=41.36 Aligned_cols=35 Identities=26% Similarity=0.406 Sum_probs=16.4
Q ss_pred CCcEEEeecCccCCCCChhhhhhcCCCcEeeccccc
Q 036588 70 SLLSINFINNALFGELPPNFCNHLSNLESLFLKSNM 105 (541)
Q Consensus 70 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 105 (541)
+|++|+|++|.+ +.++..++..+++|++|+|++|.
T Consensus 32 ~l~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNL-TALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCC-SSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcC-CccChhhhhhccccCEEEecCCC
Confidence 345555555554 34444444444455555444443
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=82.34 E-value=1.7 Score=31.63 Aligned_cols=48 Identities=19% Similarity=0.194 Sum_probs=32.2
Q ss_pred CcCCCCCCccccCCCCccEeeCCCCccccccCcccccCCcccceeeeccc
Q 036588 458 NQLSGSLPSFKFKMPLLQFLDLSSNRLSTELPTNVFHNLPFLEELYLSNN 507 (541)
Q Consensus 458 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 507 (541)
-.++.+...+|.+|.+|+.+.|-..- ..+....|.+|.+|+.+.+.+.
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~v--~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPNI--GLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTTS--SCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCch--heEcHHHHhccCCccEEEEcCC
Confidence 34455666677788888888876542 2455567778888888877643
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=81.27 E-value=2.9 Score=30.35 Aligned_cols=43 Identities=16% Similarity=0.198 Sum_probs=22.1
Q ss_pred cCChhhhcCCCCccEEEccCcccccCCCcCCcCCccCCeEEccc
Q 036588 367 ELPTNVFHNLPFLEELYLSNNMFYGEIPSDTQNCSYLRILVLKF 410 (541)
Q Consensus 367 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 410 (541)
.+....|.+|.+|+.+.+...- +......|.+|.+|+.+.+.+
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECC
T ss_pred EecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcC
Confidence 3444555555555555555432 223444555555555555544
Done!