BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036589
(176 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224117008|ref|XP_002317451.1| predicted protein [Populus trichocarpa]
gi|222860516|gb|EEE98063.1| predicted protein [Populus trichocarpa]
Length = 461
Score = 194 bits (494), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 98/165 (59%), Positives = 122/165 (73%), Gaps = 8/165 (4%)
Query: 1 MNKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITK 60
MN ++P +PFRLASLL LQK PKLALQLFKNPNP P KPFRY+LL YDLIITK
Sbjct: 1 MNPSRPITPFRLASLLRLQKDPKLALQLFKNPNPKT------PSKPFRYSLLSYDLIITK 54
Query: 61 LGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR 120
LGRAKMF+EMQ+IL QLK +T P+E +FC++I+FYGRARL E+AL++ E+PSF VQR
Sbjct: 55 LGRAKMFNEMQEILAQLKEETLFTPKEALFCDIINFYGRARLPENALKLLVELPSFRVQR 114
Query: 121 TVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKI 165
TVKS N+LL+ L C D+M+ELF+ ++ + D NL I
Sbjct: 115 TVKSYNSLLSVFLMCKDFDKMRELFVG--IEKLGKADACTYNLLI 157
>gi|224161575|ref|XP_002338346.1| predicted protein [Populus trichocarpa]
gi|222871947|gb|EEF09078.1| predicted protein [Populus trichocarpa]
Length = 230
Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 98/165 (59%), Positives = 122/165 (73%), Gaps = 8/165 (4%)
Query: 1 MNKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITK 60
MN ++P +PFRLASLL LQK PKLALQLFKNPNP P KPFRY+LL YDLIITK
Sbjct: 1 MNPSRPITPFRLASLLRLQKDPKLALQLFKNPNPKT------PSKPFRYSLLSYDLIITK 54
Query: 61 LGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR 120
LGRAKMF+EMQ+IL QLK +T P+E +FC++I+FYGRARL E+AL++ E+PSF VQR
Sbjct: 55 LGRAKMFNEMQEILAQLKEETLFTPKEALFCDIINFYGRARLPENALKLLVELPSFRVQR 114
Query: 121 TVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKI 165
TVKS N+LL+ L C D+M+ELF+ ++ + D NL I
Sbjct: 115 TVKSYNSLLSVFLMCKDFDKMRELFVG--IEKLGKADACTYNLLI 157
>gi|449456681|ref|XP_004146077.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g53330-like [Cucumis sativus]
Length = 527
Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 91/149 (61%), Positives = 116/149 (77%), Gaps = 4/149 (2%)
Query: 1 MNKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITK 60
M KP SPFRL+SLL LQK P LALQLF NPNP++++ P KPFRY+LL YDLII+K
Sbjct: 69 MKTQKPISPFRLSSLLRLQKDPTLALQLFLNPNPSSSE----PPKPFRYSLLSYDLIISK 124
Query: 61 LGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR 120
LGRAKMFDEM++IL QLK +TR P E+IFCNVI+FYGRA L + A QVF+ +PSF +R
Sbjct: 125 LGRAKMFDEMEEILQQLKQETRFAPHEVIFCNVIAFYGRAHLPDRAFQVFERIPSFRCKR 184
Query: 121 TVKSLNTLLNALLTCGKLDRMKELFISFN 149
TVKS+N+LL ALL +L++M ++F+ +
Sbjct: 185 TVKSVNSLLAALLKNRQLEKMTQVFVDIS 213
Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 9/120 (7%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I+ L + +E+ IL ++ + P+ + + +I+ + + LE A +V DEM
Sbjct: 329 YSTLISALFKHGRKEEVSDILREMGENG-CKPDTVTYNAIINGHCKENDLESAHRVMDEM 387
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA--------VLDGLCSNLKI 165
+ V S NT++ L GKLD+ +L + + DGLC +++
Sbjct: 388 VEKGCKPDVFSFNTIIGWLCKEGKLDKAMDLLEDMPRRGCPPDVLSYRIIFDGLCEMMQL 447
>gi|255576901|ref|XP_002529336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531207|gb|EEF33053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 610
Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 92/174 (52%), Positives = 121/174 (69%), Gaps = 21/174 (12%)
Query: 3 KAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLG 62
K K S FRLASLL LQ+ PKLAL LF++PN N N KPFRY+LL YDL+ITKLG
Sbjct: 5 KPKRISSFRLASLLRLQEDPKLALHLFQHPNSNPNP------KPFRYSLLCYDLMITKLG 58
Query: 63 RAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTV 122
RAKMF EM+QIL Q K TR++ +E +FCN+I+FYGRA L ++AL++FDEMP + QRT+
Sbjct: 59 RAKMFHEMEQILLQFKTQTRLVAKEPLFCNIITFYGRAGLPQNALKMFDEMPLYRCQRTI 118
Query: 123 KSLNTLLNALLTCGKLDRMKELFI-----------SFNLKAIAVLDGLCSNLKI 165
KS NTLLN L+ C + D M+E F+ +FN+ ++ GLCS+ ++
Sbjct: 119 KSYNTLLNVLMICKEFDVMREHFVNIKRHVKPDGCTFNI----MIRGLCSDGRV 168
>gi|225461712|ref|XP_002283237.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g53330-like [Vitis vinifera]
Length = 464
Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 90/140 (64%), Positives = 107/140 (76%), Gaps = 8/140 (5%)
Query: 1 MNKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITK 60
MN KP SPFRL+SLL LQ PKLALQLF+NPNP+ KPFRY L YDLIITK
Sbjct: 1 MNPPKPISPFRLSSLLRLQNDPKLALQLFQNPNPDP--------KPFRYTHLSYDLIITK 52
Query: 61 LGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR 120
LGR++MF EM+QIL QL+ +TR P+EIIFCNVISFYGRARL + A+Q F+ +P F QR
Sbjct: 53 LGRSRMFHEMEQILSQLRRETRFSPKEIIFCNVISFYGRARLPDRAIQTFESIPEFRCQR 112
Query: 121 TVKSLNTLLNALLTCGKLDR 140
TVKSLN+LLNALL C + ++
Sbjct: 113 TVKSLNSLLNALLKCKEFEK 132
>gi|147840993|emb|CAN64120.1| hypothetical protein VITISV_037241 [Vitis vinifera]
Length = 418
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 90/140 (64%), Positives = 107/140 (76%), Gaps = 8/140 (5%)
Query: 1 MNKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITK 60
MN KP SPFRL+SLL LQ PKLALQLF+NPNP+ KPFRY L YDLIITK
Sbjct: 1 MNPPKPISPFRLSSLLRLQNGPKLALQLFQNPNPDP--------KPFRYTHLSYDLIITK 52
Query: 61 LGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR 120
LGR++MF EM+QIL QL+ +TR P+EIIFCNVISFYGRARL + A+Q F+ +P F QR
Sbjct: 53 LGRSRMFHEMEQILSQLRRETRFSPKEIIFCNVISFYGRARLPDRAIQTFESIPEFRCQR 112
Query: 121 TVKSLNTLLNALLTCGKLDR 140
TVKSLN+LLNALL C + ++
Sbjct: 113 TVKSLNSLLNALLNCKEFEK 132
>gi|302142881|emb|CBI20176.3| unnamed protein product [Vitis vinifera]
Length = 146
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 81/133 (60%), Positives = 96/133 (72%), Gaps = 8/133 (6%)
Query: 1 MNKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITK 60
MN KP SPFRL+SLL LQ PKLALQLF+NPNP+ KPFRY L YDLIITK
Sbjct: 1 MNPPKPISPFRLSSLLRLQNDPKLALQLFQNPNPDP--------KPFRYTHLSYDLIITK 52
Query: 61 LGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR 120
LGR++MF EM+QIL QL+ +TR P+EIIFCNVISFYGRARL + A+Q F+ +P F QR
Sbjct: 53 LGRSRMFHEMEQILSQLRRETRFSPKEIIFCNVISFYGRARLPDRAIQTFESIPEFRCQR 112
Query: 121 TVKSLNTLLNALL 133
T + L+NA
Sbjct: 113 TGTTWTLLMNAFW 125
>gi|297847728|ref|XP_002891745.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297337587|gb|EFH68004.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 472
Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 84/149 (56%), Positives = 110/149 (73%), Gaps = 4/149 (2%)
Query: 1 MNKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITK 60
M+ K S FRLASLL + P A++LF+NP+P + + P +PFRY+LL YD+IITK
Sbjct: 1 MSAVKSVSSFRLASLLRRENDPSAAIKLFRNPDPESTN----PKRPFRYSLLCYDIIITK 56
Query: 61 LGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR 120
LG +KMFDE+ Q+L QLK DTR++P EI+FCNVI+F+GR RL AL +FDEMP + QR
Sbjct: 57 LGGSKMFDELDQVLLQLKTDTRIVPTEILFCNVINFFGRGRLPSRALHMFDEMPQYRCQR 116
Query: 121 TVKSLNTLLNALLTCGKLDRMKELFISFN 149
TVKSLN+LLN LL CG+ ++MKE S +
Sbjct: 117 TVKSLNSLLNTLLKCGEFEKMKERLSSID 145
>gi|15219274|ref|NP_175740.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75192173|sp|Q9MAG8.1|PPR79_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g53330
gi|7769859|gb|AAF69537.1|AC008007_12 F12M16.23 [Arabidopsis thaliana]
gi|332194805|gb|AEE32926.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 471
Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 84/149 (56%), Positives = 111/149 (74%), Gaps = 4/149 (2%)
Query: 1 MNKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITK 60
M+ K S FRLASLL + P A++LF+NP+P + + P +PFRY+LL YD+IITK
Sbjct: 1 MSAVKSVSSFRLASLLRRENDPSAAMKLFRNPDPESTN----PKRPFRYSLLCYDIIITK 56
Query: 61 LGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR 120
LG +KMFDE+ Q+L LK DTR++P EIIFCNVI+F+GR +L AL +FDEMP + QR
Sbjct: 57 LGGSKMFDELDQVLLHLKTDTRIVPTEIIFCNVINFFGRGKLPSRALHMFDEMPQYRCQR 116
Query: 121 TVKSLNTLLNALLTCGKLDRMKELFISFN 149
TVKSLN+LL+ALL CG+L++MKE S +
Sbjct: 117 TVKSLNSLLSALLKCGELEKMKERLSSID 145
>gi|357516331|ref|XP_003628454.1| hypothetical protein MTR_8g058400, partial [Medicago truncatula]
gi|355522476|gb|AET02930.1| hypothetical protein MTR_8g058400, partial [Medicago truncatula]
Length = 303
Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 73/139 (52%), Positives = 90/139 (64%), Gaps = 11/139 (7%)
Query: 1 MNKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITK 60
M +KP SPFRL+SLL QK P LA Q+F NP + +RY++L YDLIITK
Sbjct: 1 MGSSKPISPFRLSSLLRSQKDPSLAFQIFLNPQNH-----------YRYSILSYDLIITK 49
Query: 61 LGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR 120
LGRAKM +M+ IL QL +DTR E + C+VISFY RARL A+Q F +PSF
Sbjct: 50 LGRAKMIPQMELILQQLHNDTRHRVPEPLLCHVISFYARARLPSRAVQTFLSIPSFRCTP 109
Query: 121 TVKSLNTLLNALLTCGKLD 139
T+KS N+LLNALLTC +
Sbjct: 110 TLKSFNSLLNALLTCRRFQ 128
>gi|356514549|ref|XP_003525968.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g53330-like [Glycine max]
Length = 465
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/135 (51%), Positives = 86/135 (63%), Gaps = 4/135 (2%)
Query: 1 MNKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITK 60
M+ +KP SPFRL SLL K P LALQLF N N P +P R++L YDL+ITK
Sbjct: 1 MSTSKPISPFRLTSLLRSTKDPSLALQLFLN----PNPNPNPNPRPLRHSLRSYDLLITK 56
Query: 61 LGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR 120
L RAKMF +M+QILHQL+ T+ E + C VI Y RARL AL+ F +PSF
Sbjct: 57 LARAKMFPQMEQILHQLQTLTQFPVPEPLLCRVIISYARARLPSRALRTFLSIPSFRCTP 116
Query: 121 TVKSLNTLLNALLTC 135
T+KS N+LL+ALL C
Sbjct: 117 TLKSFNSLLHALLLC 131
>gi|449532274|ref|XP_004173107.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g53330-like [Cucumis sativus]
Length = 394
Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 61/80 (76%)
Query: 70 MQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL 129
M++IL QLK +TR P E+IFCNVI+FYGRA L + A QVF+ +PSF +RTVKS+N+LL
Sbjct: 1 MEEILQQLKQETRFAPHEVIFCNVIAFYGRAHLPDRAFQVFERIPSFRCKRTVKSVNSLL 60
Query: 130 NALLTCGKLDRMKELFISFN 149
ALL +L++M ++F+ +
Sbjct: 61 AALLKNRQLEKMTQVFVDIS 80
Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 9/120 (7%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I+ L + +E+ IL ++ + P+ + + +I+ + + LE A +V DEM
Sbjct: 196 YSTLISALFKHGRKEEVSDILREMGENG-CKPDTVTYNAIINGHCKENDLESAHRVMDEM 254
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLCSNLKI 165
+ V S NT++ L GKLD+ +L + + DGLC +++
Sbjct: 255 VEKGCKPDVFSFNTIIGWLCKEGKLDKAMDLLEDMPRRGCPPDVLSYRIIFDGLCEMMQL 314
>gi|297604045|ref|NP_001054898.2| Os05g0207200 [Oryza sativa Japonica Group]
gi|218196267|gb|EEC78694.1| hypothetical protein OsI_18845 [Oryza sativa Indica Group]
gi|222630569|gb|EEE62701.1| hypothetical protein OsJ_17504 [Oryza sativa Japonica Group]
gi|255676129|dbj|BAF16812.2| Os05g0207200 [Oryza sativa Japonica Group]
Length = 467
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 78/133 (58%), Gaps = 4/133 (3%)
Query: 4 AKPTSPFRLASLLHLQKHPKLALQLFKNPNPNAN-DTEAPPLKPFRYNLLHYDLIITKLG 62
AK +S + LA+ L + P AL+LF +P P A + P PFRY+L YD+I+ KL
Sbjct: 6 AKFSSSYHLAAALRREPDPAAALRLFLSPTPTAAAGPSSSPAPPFRYSLRCYDIIVCKLA 65
Query: 63 RAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTV 122
A++F M+ +L +L R P E + C VIS YGRARL A + F +F RT
Sbjct: 66 AARLFPAMESVLARLPSSLR--PREPLLCRVISAYGRARLPAAARRAFAHP-AFPAPRTA 122
Query: 123 KSLNTLLNALLTC 135
++LNTLL+ALL C
Sbjct: 123 RALNTLLHALLAC 135
>gi|255564599|ref|XP_002523294.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537382|gb|EEF39010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 544
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 79/138 (57%), Gaps = 11/138 (7%)
Query: 9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKP-FRYNLLHYDLIITKLGRAKMF 67
P RL S++ Q++ LALQ+F+ A +P F +N YD II KL RA++F
Sbjct: 61 PKRLVSMITRQQNLDLALQIFE---------YAGKYQPNFSHNYDTYDSIIHKLSRARVF 111
Query: 68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNT 127
++ +L L H +++ E IF NVI YG A + AL+ F + FNVQR+V+SLNT
Sbjct: 112 GPVELLLSDL-HKSQIKCGENIFINVIRNYGLAGKPDFALRTFIRIQDFNVQRSVRSLNT 170
Query: 128 LLNALLTCGKLDRMKELF 145
LLNA + + D + +F
Sbjct: 171 LLNAFVQNKRYDLVHAMF 188
>gi|297834132|ref|XP_002884948.1| hypothetical protein ARALYDRAFT_478692 [Arabidopsis lyrata subsp.
lyrata]
gi|297330788|gb|EFH61207.1| hypothetical protein ARALYDRAFT_478692 [Arabidopsis lyrata subsp.
lyrata]
Length = 394
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 80/143 (55%), Gaps = 11/143 (7%)
Query: 4 AKPTSPF-RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLG 62
A P+SP L +L++ ++ PK ++ FK +A + FR N+ Y+ + +L
Sbjct: 32 ATPSSPRPSLITLVNDERDPKFIMEKFK---------KACQAEWFRKNIAVYEKTVRRLA 82
Query: 63 RAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTV 122
AK F+ +++IL + ++ + +E +I+ YGR + E+A +VFDEMP N +RTV
Sbjct: 83 AAKKFEWVEEILEE-QNKYPNMSKEGFVARIINLYGRVGMFENAQKVFDEMPERNCKRTV 141
Query: 123 KSLNTLLNALLTCGKLDRMKELF 145
S N LLNA + K D ++ +F
Sbjct: 142 LSFNALLNACVNSKKFDLVESIF 164
>gi|449485877|ref|XP_004157297.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g07740, mitochondrial-like [Cucumis sativus]
Length = 460
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 71/126 (56%), Gaps = 11/126 (8%)
Query: 20 KHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKH 79
K P AL LF+N + K F+++ Y +I KL R++ F+ ++ IL L+
Sbjct: 60 KDPCEALALFENYHE----------KGFKHHYPSYSSLIYKLARSRRFEAVETILGHLR- 108
Query: 80 DTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD 139
+ + E +F +I YG+A L+E +++F +MPSFN RT++S N LLN L+ C +
Sbjct: 109 NRNIRCNETLFVALIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVDCDQFS 168
Query: 140 RMKELF 145
+ E+F
Sbjct: 169 KASEIF 174
>gi|449436014|ref|XP_004135789.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07740,
mitochondrial-like [Cucumis sativus]
Length = 460
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 71/126 (56%), Gaps = 11/126 (8%)
Query: 20 KHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKH 79
K P AL LF+N + K F+++ Y +I KL R++ F+ ++ IL L+
Sbjct: 60 KDPCEALALFENYHE----------KGFKHHYPSYSSLIYKLARSRRFEAVETILGHLR- 108
Query: 80 DTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD 139
+ + E +F +I YG+A L+E +++F +MPSFN RT++S N LLN L+ C +
Sbjct: 109 NRNIRCNETLFVALIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVDCDQFS 168
Query: 140 RMKELF 145
+ E+F
Sbjct: 169 KASEIF 174
>gi|242049778|ref|XP_002462633.1| hypothetical protein SORBIDRAFT_02g029280 [Sorghum bicolor]
gi|241926010|gb|EER99154.1| hypothetical protein SORBIDRAFT_02g029280 [Sorghum bicolor]
Length = 466
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 75/131 (57%), Gaps = 12/131 (9%)
Query: 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMF 67
S + LA+ L + P AL+LF NP +A PFRY+L YDLII +L A++F
Sbjct: 7 SSYHLAAALRRELDPAAALRLFLNPPASAT--------PFRYSLRCYDLIICRLAAARLF 58
Query: 68 DEMQQILHQLKHDTRVI---PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKS 124
M+ IL +L + P E + C VIS YGRARL A + F P+F +RT ++
Sbjct: 59 PAMESILSRLASSSSSSGPRPREQLLCRVISAYGRARLPAAARRAFTH-PAFPGRRTARA 117
Query: 125 LNTLLNALLTC 135
LNTLL+ALL C
Sbjct: 118 LNTLLHALLDC 128
Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 79 HDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKL 138
HD + P+ + ++ + ++HA Q+FDEM + TV + TL+ AL G+L
Sbjct: 140 HDAGIPPDACTYNILMRAAAASGSVDHARQLFDEMLRRGIAPTVVTFGTLVAALCDAGQL 199
Query: 139 D---RMKELFI 146
+ MKE+ +
Sbjct: 200 EDAFDMKEVMV 210
>gi|21617993|gb|AAM67043.1| unknown [Arabidopsis thaliana]
Length = 394
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 78/143 (54%), Gaps = 11/143 (7%)
Query: 4 AKPTSPF-RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLG 62
A P+ P L +L++ ++ PK + FK +A + FR N+ Y+ + +L
Sbjct: 32 ATPSPPKPSLITLVNDERDPKFITEKFK---------KACQAEWFRKNIAVYERTVRRLA 82
Query: 63 RAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTV 122
AK F+ +++IL + ++ + +E +I+ YGR + E+A +VFDEMP N +RTV
Sbjct: 83 AAKKFEWVEEILEE-QNKYPNMSKEGFVARIINLYGRVGMFENAQKVFDEMPERNCKRTV 141
Query: 123 KSLNTLLNALLTCGKLDRMKELF 145
S N LLNA + K D ++ +F
Sbjct: 142 LSFNALLNACVNSKKFDLVEGIF 164
>gi|147821100|emb|CAN70963.1| hypothetical protein VITISV_038268 [Vitis vinifera]
Length = 844
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 46/138 (33%), Positives = 76/138 (55%), Gaps = 9/138 (6%)
Query: 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMF 67
SP R+ S++ Q++ LALQ+F D + F +N Y +I KL +A+ F
Sbjct: 100 SPKRVVSMISRQQNLDLALQIF--------DHAGKFHRNFAHNYETYLAMIEKLSKARAF 151
Query: 68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNT 127
+ M+ ++ QL H +++ E +F VI YG A + A++ F +PSF +Q +V+S NT
Sbjct: 152 EPMETLISQL-HKSQIKCGENLFITVIRNYGFAGRPKLAIRTFLRIPSFGLQPSVRSFNT 210
Query: 128 LLNALLTCGKLDRMKELF 145
LLN L+ + D + +F
Sbjct: 211 LLNTLVQNKRFDLVHLMF 228
>gi|15222796|ref|NP_175985.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174230|sp|Q9LG23.1|PPR82_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g55890, mitochondrial; Flags: Precursor
gi|8778306|gb|AAF79315.1|AC002304_8 F14J16.14 [Arabidopsis thaliana]
gi|18650654|gb|AAL75896.1| At1g55890/F14J16_4 [Arabidopsis thaliana]
gi|53828645|gb|AAU94432.1| At1g55890 [Arabidopsis thaliana]
gi|332195194|gb|AEE33315.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 398
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 76/134 (56%), Gaps = 10/134 (7%)
Query: 12 LASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQ 71
L SL++ +++PK ++ FK +A + FR N+ YD + +L AK ++
Sbjct: 44 LTSLVNGERNPKRIVEKFK---------KACESERFRTNIAVYDRTVRRLVAAKRLHYVE 94
Query: 72 QILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA 131
+IL + K R + +E +IS YG+A + E+A +VF+EMP+ + +R+V S N LL+A
Sbjct: 95 EILEEQKK-YRDMSKEGFAARIISLYGKAGMFENAQKVFEEMPNRDCKRSVLSFNALLSA 153
Query: 132 LLTCGKLDRMKELF 145
K D ++ELF
Sbjct: 154 YRLSKKFDVVEELF 167
>gi|18399887|ref|NP_566445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273726|sp|Q9LK57.1|PP226_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g13160, mitochondrial; Flags: Precursor
gi|10172603|dbj|BAB01407.1| unnamed protein product [Arabidopsis thaliana]
gi|22531265|gb|AAM97136.1| expressed protein [Arabidopsis thaliana]
gi|27311983|gb|AAO00957.1| expressed protein [Arabidopsis thaliana]
gi|332641782|gb|AEE75303.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 394
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 77/143 (53%), Gaps = 11/143 (7%)
Query: 4 AKPTSPF-RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLG 62
A P+ P L +L++ ++ PK + FK +A + FR N+ Y+ + +L
Sbjct: 32 ATPSPPKPSLITLVNDERDPKFITEKFK---------KACQAEWFRKNIAVYERTVRRLA 82
Query: 63 RAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTV 122
AK F+ +++IL + ++ + +E +I+ YGR + E+A +VFDEMP N +RT
Sbjct: 83 AAKKFEWVEEILEE-QNKYPNMSKEGFVARIINLYGRVGMFENAQKVFDEMPERNCKRTA 141
Query: 123 KSLNTLLNALLTCGKLDRMKELF 145
S N LLNA + K D ++ +F
Sbjct: 142 LSFNALLNACVNSKKFDLVEGIF 164
>gi|147819559|emb|CAN76564.1| hypothetical protein VITISV_029137 [Vitis vinifera]
Length = 449
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 59/102 (57%), Gaps = 3/102 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQIL-HQLKHDTRVIPEEIIFCNVISFYGRARLL 103
K FR +Y+ + L +AK F ++ IL HQ +++ I E+ +I+ YG+A +
Sbjct: 164 KRFRSRYGYYEKAVLTLAKAKKFSFIEDILEHQKQYNE--ISTEVFAVRLITLYGKAGMF 221
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
EHA ++FDEMP N +RTV S N LL+A + K D++ F
Sbjct: 222 EHAHKLFDEMPKLNCERTVMSFNALLSACVNSKKFDKIDGFF 263
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 40 EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR 99
E P L R ++ ++ +++ +K FD++ +L + ++P+ + + +++ +
Sbjct: 230 EMPKLNCER-TVMSFNALLSACVNSKKFDKIDGFFQELPRNLGIVPDVVSYNILVNAFCE 288
Query: 100 ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCG 136
L+ AL V DEM ++ + + NTLLN G
Sbjct: 289 MGSLDSALSVLDEMEKVGLEPDLITFNTLLNVFYQSG 325
>gi|357129559|ref|XP_003566429.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g53330-like [Brachypodium distachyon]
Length = 461
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 78/128 (60%), Gaps = 5/128 (3%)
Query: 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMF 67
S + LA+ L + P AL+LF NP+ A +P PFRY+L YDLII+K+ A++F
Sbjct: 7 SSYHLAAALRREPDPAAALRLFLNPSSAA---ASPIPTPFRYSLRCYDLIISKVAAARLF 63
Query: 68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNT 127
M+ +L L+ + + P E + C VIS YGRARL A + F P+F RT ++LNT
Sbjct: 64 PAMESLLSSLRT-SSLSPREPLLCCVISAYGRARLPAAARRAF-AHPAFPAPRTSRALNT 121
Query: 128 LLNALLTC 135
LL+ALL C
Sbjct: 122 LLHALLVC 129
>gi|297847954|ref|XP_002891858.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297337700|gb|EFH68117.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 395
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 75/134 (55%), Gaps = 10/134 (7%)
Query: 12 LASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQ 71
L S+++ +++P+ ++ FK +A + FR N+ YD + +L AK ++
Sbjct: 41 LTSIVNGERNPQRIVEKFK---------KACESERFRNNIAVYDRTVRRLVAAKRLHFVE 91
Query: 72 QILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA 131
+IL + K R + +E +IS YG+A + E+A +VFDEMP N +R+V S N LL+A
Sbjct: 92 EILEEQKK-YRDMSKEGFAARIISLYGKAGMFENAQKVFDEMPDRNCKRSVLSFNALLSA 150
Query: 132 LLTCGKLDRMKELF 145
K D +++LF
Sbjct: 151 YGLSKKFDVVEQLF 164
>gi|297798228|ref|XP_002866998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312834|gb|EFH43257.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 411
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 9/135 (6%)
Query: 11 RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEM 70
+ S L + P AL+++ N +D A P+ RY +L + +L + + F ++
Sbjct: 35 KAKSTLRKEHDPDKALKIY----ANVSDHSASPVSS-RYAQ---ELTVRRLAKCRRFSDI 86
Query: 71 QQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLN 130
+ ++ K+D + I EE + +I YGRA + +HA++ F++M + R+ S N LLN
Sbjct: 87 ETLIESHKNDPK-IKEEPFYSTLIRSYGRASMFDHAMRTFEQMDQYGTPRSAVSFNALLN 145
Query: 131 ALLTCGKLDRMKELF 145
A L K D++ +LF
Sbjct: 146 ACLHSKKFDKVPQLF 160
>gi|297849070|ref|XP_002892416.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338258|gb|EFH68675.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 459
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 69/123 (56%), Gaps = 13/123 (10%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
FR++ Y +I KL +++ FD + QIL +++ V E +F +I YG+A ++ A
Sbjct: 77 FRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYRN-VRCRESLFMALIQHYGKAGWVDKA 135
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF------------ISFNLKAIA 154
+ VF ++ SF+ RT++SLNTL+N L+ G+L++ K F +SFN+
Sbjct: 136 VDVFHKLTSFDCVRTIQSLNTLINVLVDNGELEKAKSFFDGAKDMRLRPNSVSFNILIKG 195
Query: 155 VLD 157
LD
Sbjct: 196 FLD 198
>gi|255548031|ref|XP_002515072.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545552|gb|EEF47056.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 504
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 11/140 (7%)
Query: 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKP-FRYNLLHYDLIITKLGRAKM 66
+P L+ ++ QK+P +AL++FK EA P +R+N Y +I LG +
Sbjct: 10 TPTHLSQIIRNQKNPLIALRIFK---------EAKDKYPNYRHNGPVYATMIGILGSSGR 60
Query: 67 FDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLN 126
EM+++L Q++ D+ ++ IF N I Y R LL A+ +F +P FN +S N
Sbjct: 61 ITEMKEVLDQMREDS-CECKDSIFANAIKTYARVGLLNEAISLFKNIPQFNCVNWTESFN 119
Query: 127 TLLNALLTCGKLDRMKELFI 146
TLL ++ KL+ LF+
Sbjct: 120 TLLQIMVKESKLEAAHRLFL 139
>gi|15222997|ref|NP_172253.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180186|sp|Q9LQQ1.1|PPR20_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g07740, mitochondrial; Flags: Precursor
gi|8439893|gb|AAF75079.1|AC007583_15 It contains PPR repeats PF|01535 [Arabidopsis thaliana]
gi|14596021|gb|AAK68738.1| Unknown protein [Arabidopsis thaliana]
gi|31376389|gb|AAP49521.1| At1g07730 [Arabidopsis thaliana]
gi|51970836|dbj|BAD44110.1| hypothetical protein [Arabidopsis thaliana]
gi|332190050|gb|AEE28171.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 459
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 69/123 (56%), Gaps = 13/123 (10%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
FR++ Y +I KL +++ FD + QIL +++ V E +F +I YG+A ++ A
Sbjct: 77 FRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRY-RNVRCRESLFMGLIQHYGKAGSVDKA 135
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF------------ISFNLKAIA 154
+ VF ++ SF+ RT++SLNTL+N L+ G+L++ K F +SFN+
Sbjct: 136 IDVFHKITSFDCVRTIQSLNTLINVLVDNGELEKAKSFFDGAKDMRLRPNSVSFNILIKG 195
Query: 155 VLD 157
LD
Sbjct: 196 FLD 198
>gi|194699862|gb|ACF84015.1| unknown [Zea mays]
gi|414886155|tpg|DAA62169.1| TPA: rf1 protein [Zea mays]
Length = 456
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMF 67
S + LA+ L + P AL+LF NP +A PFRY+L YDLII++L A++F
Sbjct: 7 SSYHLAAALRREPDPAAALRLFLNPPASAT--------PFRYSLRCYDLIISRLAAARLF 58
Query: 68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYG 98
M+ IL +L + P E + C V+S YG
Sbjct: 59 PAMESILSRLASSSGPRPREQLLCRVVSAYG 89
>gi|255555093|ref|XP_002518584.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542429|gb|EEF43971.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 377
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 39 TEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYG 98
+E+P FR Y I+ +L AK F ++ L K+ + E+ +IS YG
Sbjct: 46 SESPE---FRARHRFYSTIVRRLSFAKQFSMVEDFLEHQKNFADITNEQFTI-RLISLYG 101
Query: 99 RARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDG 158
+A +L+HA ++FDEMP RTV+S N LL+A + GK D+++ F +K D
Sbjct: 102 KAGMLDHAHRLFDEMPDLKCTRTVRSFNALLSACIDSGKFDKVQGFLRDFPVKLGITPDV 161
Query: 159 LCSNLKI 165
+ N+ I
Sbjct: 162 VSFNIVI 168
>gi|242087215|ref|XP_002439440.1| hypothetical protein SORBIDRAFT_09g006440 [Sorghum bicolor]
gi|241944725|gb|EES17870.1| hypothetical protein SORBIDRAFT_09g006440 [Sorghum bicolor]
Length = 462
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 70/127 (55%), Gaps = 9/127 (7%)
Query: 12 LASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQ 71
L++ L + P AL+LF NP NA P PFRY+L YD+II+KL A++F +M+
Sbjct: 10 LSAALLRETDPAAALRLFLNPT-NAT----PSSSPFRYSLRCYDIIISKLAAARLFPDME 64
Query: 72 QILHQLKH---DTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTL 128
IL L + E + C VIS YGRARL A + F +F RT ++NTL
Sbjct: 65 SILSGLPSAVPSSGTGTREHVLCQVISAYGRARLPAAARRAFAHP-AFPEPRTAHAVNTL 123
Query: 129 LNALLTC 135
L ALL C
Sbjct: 124 LTALLAC 130
>gi|225450630|ref|XP_002278172.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
mitochondrial [Vitis vinifera]
gi|296089757|emb|CBI39576.3| unnamed protein product [Vitis vinifera]
Length = 586
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 76/138 (55%), Gaps = 9/138 (6%)
Query: 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMF 67
SP R+ S++ Q++ LALQ+F D + F +N Y +I KL +A+ F
Sbjct: 100 SPKRVVSMISRQQNLDLALQIF--------DHAGKFHRNFAHNYETYLAMIEKLSKARAF 151
Query: 68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNT 127
+ M+ ++ QL H +++ E +F VI YG A + A++ F +PSF +Q +V+S NT
Sbjct: 152 EPMETLISQL-HKSQIKCGENLFITVIRNYGFAGRPKLAIRTFLRIPSFGLQPSVRSFNT 210
Query: 128 LLNALLTCGKLDRMKELF 145
LLN L+ + D + +F
Sbjct: 211 LLNTLVQNKRFDLVHLMF 228
>gi|359496222|ref|XP_002263756.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g13150-like [Vitis vinifera]
Length = 379
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 58/102 (56%), Gaps = 3/102 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQIL-HQLKHDTRVIPEEIIFCNVISFYGRARLL 103
K FR +Y+ + L +AK F ++ IL HQ +++ I E+ +++ YG+A +
Sbjct: 51 KRFRSRYGYYEKAVLTLAKAKKFSFIEDILEHQKQYNE--ISTEVFAVRLMTLYGKAGMF 108
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
EHA ++FDE+P N +RTV S N LL+ + K D++ F
Sbjct: 109 EHAHKLFDELPKLNCERTVVSFNALLSVCVNSKKFDKIDGFF 150
Score = 40.0 bits (92), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 40 EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR 99
E P L R ++ ++ +++ +K FD++ +L + V+P+ + + +++ +
Sbjct: 117 ELPKLNCER-TVVSFNALLSVCVNSKKFDKIDGFFQELPGNLGVVPDVVSYNIIVNAFCE 175
Query: 100 ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCG 136
L+ AL V DEM ++ + + NTLLNA G
Sbjct: 176 MGSLDSALSVLDEMEKVGLEPDLITFNTLLNAFYQNG 212
>gi|147791424|emb|CAN76851.1| hypothetical protein VITISV_005999 [Vitis vinifera]
Length = 383
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 18/134 (13%)
Query: 40 EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR 99
++ L FR Y+ + +L AK F +++IL + K + I E +IS YG+
Sbjct: 48 KSSELDRFRTKTGIYEETVRRLASAKRFRWIEEILEEQKK-YKDISREGFAVRLISLYGK 106
Query: 100 ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF-------------I 146
+ + +HA +VFDEMP +R+V S N LL A + K D+++ F +
Sbjct: 107 SGMFDHAFKVFDEMPDQKCERSVLSFNXLLGACVXSKKFDKVEGFFSELPSKLSVEPDLV 166
Query: 147 SFNLKAIAVLDGLC 160
S+N+ V+ GLC
Sbjct: 167 SYNI----VIKGLC 176
>gi|359496226|ref|XP_003635182.1| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
mitochondrial-like [Vitis vinifera]
Length = 382
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 18/134 (13%)
Query: 40 EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR 99
++ L FR Y+ + +L AK F +++IL + K + I E +I+ YG+
Sbjct: 48 KSSELDRFRTKTGIYEETVRRLASAKRFRWIEEILEEQKK-YKDISREGFAVRLITLYGK 106
Query: 100 ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF-------------I 146
+ + +HA +VFDEMP +R+V S N LL A + K D+++ F +
Sbjct: 107 SGMFDHAFKVFDEMPDQKCERSVLSFNALLGACVNSKKFDKVEGFFSELPSKLSVEPDLV 166
Query: 147 SFNLKAIAVLDGLC 160
S+N+ V++GLC
Sbjct: 167 SYNI----VINGLC 176
>gi|449455956|ref|XP_004145716.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
mitochondrial-like [Cucumis sativus]
gi|449492939|ref|XP_004159147.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
mitochondrial-like [Cucumis sativus]
Length = 535
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 76/138 (55%), Gaps = 11/138 (7%)
Query: 9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKP-FRYNLLHYDLIITKLGRAKMF 67
P RL +++ Q++ LALQ+F A P F +N Y II +L RA+ F
Sbjct: 52 PNRLVAMIRRQQNLDLALQIFH---------YAGKYHPAFTHNYDTYHAIIYRLSRARAF 102
Query: 68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNT 127
+ ++ +L +L+ D+ + E +F VI YG A + AL+ F + +F V+R+V+SLNT
Sbjct: 103 EPVESLLLELQ-DSGINCSEDLFITVIRSYGLASRPKMALKTFLRIQTFGVRRSVRSLNT 161
Query: 128 LLNALLTCGKLDRMKELF 145
LLNAL+ + + LF
Sbjct: 162 LLNALVQNNRFSSVHLLF 179
>gi|296089005|emb|CBI38708.3| unnamed protein product [Vitis vinifera]
Length = 466
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 74/141 (52%), Gaps = 15/141 (10%)
Query: 9 PFRLASLLHLQKHPKLALQLF---KNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAK 65
P +L+ ++ QK+P AL++F K+ PN +R+N Y +I LG +
Sbjct: 11 PTQLSQMIRTQKNPLTALKIFNEAKSKFPN-----------YRHNGPVYATMINVLGSSG 59
Query: 66 MFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSL 125
EM++++ Q+K D+ ++ +F +V+ Y RA +++ A+ +F +P FN S
Sbjct: 60 RIAEMREVIDQMKQDS-CECKDSVFSSVMKTYARAGMVDEAVSLFKTLPQFNCVNWTGSF 118
Query: 126 NTLLNALLTCGKLDRMKELFI 146
NTLL L+ KL+ LF+
Sbjct: 119 NTLLRILVKESKLETACRLFL 139
>gi|225466731|ref|XP_002268415.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g05600-like [Vitis vinifera]
Length = 503
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 74/141 (52%), Gaps = 15/141 (10%)
Query: 9 PFRLASLLHLQKHPKLALQLF---KNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAK 65
P +L+ ++ QK+P AL++F K+ PN +R+N Y +I LG +
Sbjct: 11 PTQLSQMIRTQKNPLTALKIFNEAKSKFPN-----------YRHNGPVYATMINVLGSSG 59
Query: 66 MFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSL 125
EM++++ Q+K D+ ++ +F +V+ Y RA +++ A+ +F +P FN S
Sbjct: 60 RIAEMREVIDQMKQDS-CECKDSVFSSVMKTYARAGMVDEAVSLFKTLPQFNCVNWTGSF 118
Query: 126 NTLLNALLTCGKLDRMKELFI 146
NTLL L+ KL+ LF+
Sbjct: 119 NTLLRILVKESKLETACRLFL 139
>gi|359496216|ref|XP_002268636.2| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
mitochondrial [Vitis vinifera]
Length = 383
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 18/134 (13%)
Query: 40 EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR 99
++ L FR Y+ + +L AK F +++IL + K + I E +IS YG+
Sbjct: 48 KSSELDRFRTKTGIYEETVRRLASAKRFRWIEEILEEQKK-YKDISREGFAVRLISLYGK 106
Query: 100 ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF-------------I 146
+ + +HA +VFDEMP +R+V S N LL A + K D+++ F +
Sbjct: 107 SGMFDHAFKVFDEMPDQKCERSVLSFNALLGACVHSKKFDKVEGFFSELPSKLSVEPDLV 166
Query: 147 SFNLKAIAVLDGLC 160
S+N+ V+ GLC
Sbjct: 167 SYNI----VIKGLC 176
>gi|297807667|ref|XP_002871717.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317554|gb|EFH47976.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 533
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 77/138 (55%), Gaps = 9/138 (6%)
Query: 9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFD 68
P RL S++ Q++ LALQ+F ++ P F +N Y I+ KL RA+ FD
Sbjct: 47 PKRLVSMITQQQNIDLALQIFLYAG------KSHP--GFTHNYDTYHSILFKLSRARAFD 98
Query: 69 EMQQILHQLKHDTRVIP-EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNT 127
++ ++ L++ I E +F +++ YG A E ++++F +P F V+R+V+SLNT
Sbjct: 99 PVESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNT 158
Query: 128 LLNALLTCGKLDRMKELF 145
LLN L+ + D + +F
Sbjct: 159 LLNVLIQNQRFDLVHAMF 176
>gi|356544600|ref|XP_003540737.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07740,
mitochondrial-like [Glycine max]
Length = 449
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 19/145 (13%)
Query: 5 KPTSPFR----LASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITK 60
+PT FR + + + P+ AL LF FR+ Y ++ K
Sbjct: 34 RPTPKFRKRIPFVTEVKTVEDPEEALSLFHRYKEQG----------FRHYYPSYAALLYK 83
Query: 61 LGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR 120
L R++MFD ++ IL +K DT + E +F + YG E A+++F+ MP FN R
Sbjct: 84 LARSRMFDAVETILAHMK-DTEMQCRESVFIALFQHYGP----EKAVELFNRMPQFNCTR 138
Query: 121 TVKSLNTLLNALLTCGKLDRMKELF 145
T++S N LLN L+ + D ++F
Sbjct: 139 TIQSFNALLNVLIDNDRFDEANDIF 163
>gi|15237345|ref|NP_197146.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170213|sp|Q9FFE3.1|PP388_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g16420, mitochondrial; Flags: Precursor
gi|9759124|dbj|BAB09609.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|332004907|gb|AED92290.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 535
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 9 PFRLASLLHLQKHPKLALQLF---KNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAK 65
P RL S++ Q++ LALQ+F +P F +N Y I+ KL RA+
Sbjct: 49 PKRLVSMITQQQNIDLALQIFLYAGKSHPG-----------FTHNYDTYHSILFKLSRAR 97
Query: 66 MFDEMQQILHQLKHDTRVIP-EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKS 124
FD ++ ++ L++ I E +F +++ YG A E ++++F +P F V+R+V+S
Sbjct: 98 AFDPVESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRS 157
Query: 125 LNTLLNALLTCGKLDRMKELF 145
LNTLLN L+ + D + +F
Sbjct: 158 LNTLLNVLIQNQRFDLVHAMF 178
>gi|147791423|emb|CAN76850.1| hypothetical protein VITISV_005998 [Vitis vinifera]
Length = 340
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 3/102 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQIL-HQLKHDTRVIPEEIIFCNVISFYGRARLL 103
K FR +Y+ + L +AK F ++ IL HQ +++ I E+ +++ YG+A +
Sbjct: 12 KRFRSRYGYYEKAVLTLAKAKKFSFIEDILEHQKQYNE--ISTEVFAVRLMTLYGKAGMF 69
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
EHA ++FDE P N +RTV S N LL+ + K D++ F
Sbjct: 70 EHAHKLFDEXPKLNCERTVVSFNALLSVCVXSKKFDKIDGFF 111
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 40 EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR 99
E P L R ++ ++ +++ +K FD++ +L + V+P+ + + +++ +
Sbjct: 78 EXPKLNCER-TVVSFNALLSVCVXSKKFDKIDGFFQELPGNLGVVPDVVSYNIIVNAFCE 136
Query: 100 ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCG 136
L+ AL V DEM ++ + + NTLLNA G
Sbjct: 137 MGSLDSALSVLDEMEKVGLEPDLITFNTLLNAFYQNG 173
>gi|297834130|ref|XP_002884947.1| hypothetical protein ARALYDRAFT_897532 [Arabidopsis lyrata subsp.
lyrata]
gi|297330787|gb|EFH61206.1| hypothetical protein ARALYDRAFT_897532 [Arabidopsis lyrata subsp.
lyrata]
Length = 528
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 54 YDLIITKLGRAKMFDEMQQIL-HQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDE 112
Y I +L AK F + ++L +Q K D I E ++ YG + + EHA ++FDE
Sbjct: 93 YSAFIRRLREAKKFSTIHEVLQYQKKFDD--IKSEDFVIRIMLLYGYSGMAEHAHKLFDE 150
Query: 113 MPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
MP N +RTVKS N LL+A + KLD K+ F
Sbjct: 151 MPELNCERTVKSFNALLSAYVNSRKLDEAKKAF 183
>gi|297830004|ref|XP_002882884.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297328724|gb|EFH59143.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 409
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 62/113 (54%), Gaps = 2/113 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR-ARLLEHALQVFDE 112
Y L+I K G+AKMFDE+++++ +K + R E F N++ YG A + A+++
Sbjct: 98 YALLINKFGQAKMFDEIEEVMSTIKLEKRCRFSEDFFYNLMRIYGNLAGRINRAIEILFG 157
Query: 113 MPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKI 165
MP F + KS N +LN L++ D + ++F+S + + D C N+ I
Sbjct: 158 MPDFGCWPSAKSFNFILNLLVSAKLFDEIHKIFVSAPKLGVEI-DACCLNILI 209
>gi|15234493|ref|NP_195386.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181418|sp|Q9M065.1|PP352_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g36680, mitochondrial; Flags: Precursor
gi|2464912|emb|CAB16807.1| salt-inducible like protein [Arabidopsis thaliana]
gi|7270616|emb|CAB80334.1| salt-inducible like protein [Arabidopsis thaliana]
gi|17381286|gb|AAL36061.1| C7A10_680/C7A10_680 [Arabidopsis thaliana]
gi|24111267|gb|AAN46757.1| At4g36680/C7A10_680 [Arabidopsis thaliana]
gi|332661286|gb|AEE86686.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 412
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 69/132 (52%), Gaps = 9/132 (6%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
S L + P AL+++ N +D A P+ RY +L + +L + + F +++ +
Sbjct: 38 STLRKEHDPDKALKIY----ANVSDHSASPVSS-RYAQ---ELTVRRLAKCRRFSDIETL 89
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
+ K+D + I EE + +I YG+A + HA++ F++M + R+ S N LLNA L
Sbjct: 90 IESHKNDPK-IKEEPFYSTLIRSYGQASMFNHAMRTFEQMDQYGTPRSAVSFNALLNACL 148
Query: 134 TCGKLDRMKELF 145
D++ +LF
Sbjct: 149 HSKNFDKVPQLF 160
Score = 36.6 bits (83), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 64 AKMFDEMQQILHQL-KHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTV 122
+K FD++ Q+ ++ + ++IP++I + +I Y + E A+++ +M ++ T
Sbjct: 150 SKNFDKVPQLFDEIPQRYNKIIPDKISYGILIKSYCDSGTPEKAIEIMRQMQGKGMEVTT 209
Query: 123 KSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKII 166
+ T+L++L G+L+ L+ +K LD N++I+
Sbjct: 210 IAFTTILSSLYKKGELEVADNLWNEM-VKKGCELDNAAYNVRIM 252
>gi|2632061|emb|CAA05629.1| membrane-associated salt-inducible protein like [Arabidopsis
thaliana]
Length = 428
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 69/132 (52%), Gaps = 9/132 (6%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
S L + P AL+++ N +D A P+ RY +L + +L + + F +++ +
Sbjct: 54 STLRKEHDPDKALKIY----ANVSDHSASPVSS-RYAQ---ELTVRRLAKCRRFSDIETL 105
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
+ K+D + I EE + +I YG+A + HA++ F++M + R+ S N LLNA L
Sbjct: 106 IESHKNDPK-IKEEPFYSTLIRSYGQASMFNHAMRTFEQMDQYGTPRSAVSFNALLNACL 164
Query: 134 TCGKLDRMKELF 145
D++ +LF
Sbjct: 165 HSKNFDKVPQLF 176
Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 64 AKMFDEMQQILHQL-KHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTV 122
+K FD++ Q+ ++ + ++IP++I + +I Y + E A+++ +M ++ T
Sbjct: 166 SKNFDKVPQLFDEIPQRYNKIIPDKISYGILIKSYCDSGTPEKAIEIMRQMQGKGMEVTT 225
Query: 123 KSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKII 166
+ T+L++L G+L+ L+ +K LD N++I+
Sbjct: 226 IAFTTILSSLYKKGELEVADNLWNEM-VKKGCELDNAAYNVRIM 268
>gi|226493605|ref|NP_001151863.1| rf1 protein [Zea mays]
gi|195650381|gb|ACG44658.1| rf1 protein [Zea mays]
Length = 467
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Query: 13 ASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQ 72
A+ L + P AL+LF NP +A PFRY+L YDLII++L A++F M+
Sbjct: 23 AAALRREPDPAAALRLFLNPPASAT--------PFRYSLRCYDLIISRLAAARLFPAMES 74
Query: 73 ILHQLKHDTRVIPEEIIFCNVISFYG 98
+L +L + P E + C V+S YG
Sbjct: 75 VLSRLASSSGPRPREQLLCRVVSAYG 100
>gi|147858028|emb|CAN80345.1| hypothetical protein VITISV_003133 [Vitis vinifera]
Length = 1051
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 64/111 (57%), Gaps = 12/111 (10%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+++ Y ++ KL R++ F+ ++ +L L+ + + E +F +I YG++++ E A
Sbjct: 409 FKHDYPSYSALVYKLARSRNFEAVETLLDYLQ-NINIRCRETLFIALIQHYGKSQMPEKA 467
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLD 157
+++F MPSFN RT+ S NTLLN L+ ++DR L AI + D
Sbjct: 468 IELFQRMPSFNCHRTIVSFNTLLNVLV---EIDRF--------LDAIGIFD 507
>gi|224114223|ref|XP_002316701.1| predicted protein [Populus trichocarpa]
gi|222859766|gb|EEE97313.1| predicted protein [Populus trichocarpa]
Length = 386
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 10/140 (7%)
Query: 6 PTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAK 65
P + L+ L++ +++ K ++ FKN + N + FR + Y I +L ++
Sbjct: 28 PDTAKSLSYLIYKERNHKKLVKKFKNASVNEH---------FRTKVAIYKETIRRLSVSR 78
Query: 66 MFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSL 125
FD +++IL K + + +E +IS YG + +HA +VFDEM RTV S
Sbjct: 79 KFDYVEEILEDQKQ-YKDMSKEGFNARLISLYGSVGMFDHARKVFDEMRERQCARTVMSF 137
Query: 126 NTLLNALLTCGKLDRMKELF 145
N LL A L+ D ++ LF
Sbjct: 138 NALLGACLSSKNFDEVEGLF 157
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 64 AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVK 123
+K FDE++ + L + ++ P+ I + VI + L+ A+ + DEM ++ +
Sbjct: 147 SKNFDEVEGLFRGLSKEIKIEPDLISYNTVIKAFCEMGSLDSAVSLLDEMKRKGLEPDLI 206
Query: 124 SLNTLLNALLTCGKL 138
+ NTLL+ G+
Sbjct: 207 TFNTLLHGFYAKGRF 221
>gi|356524760|ref|XP_003530996.1| PREDICTED: pentatricopeptide repeat-containing protein At1g55890,
mitochondrial-like [Glycine max]
Length = 381
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Query: 40 EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL-HQLKHDTRVIPEEIIFCNVISFYG 98
+A + FR Y+ + +L A+ F ++ IL HQ ++ I E +IS YG
Sbjct: 47 KASDIDRFRKKTGIYEDTVRRLAGARRFRWIRDILEHQKQYSD--ISNEGFSARLISLYG 104
Query: 99 RARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
++ + +HA +VFDEMP N RTV SLN LL A L K D + ELF
Sbjct: 105 KSGMTKHARKVFDEMPQRNCSRTVLSLNALLAAYLHSRKYDIVGELF 151
>gi|296090624|emb|CBI41008.3| unnamed protein product [Vitis vinifera]
Length = 379
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 41 APPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRA 100
+ L FR Y+ + +L AK F +++IL + K + I E +IS YG++
Sbjct: 57 SSELDRFRTKTGIYEETVRRLASAKRFRWIEEILEEQKK-YKDISREGFAVRLISLYGKS 115
Query: 101 RLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ +HA +VFDEMP +R+V S N LL A + K D++ F
Sbjct: 116 GMFDHAFKVFDEMPDQKCERSVLSFNALLGACVHSKKFDKIDGFF 160
Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 40 EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR 99
E P K R ++L ++ ++ +K FD++ +L + V+P+ + + +++ +
Sbjct: 127 EMPDQKCER-SVLSFNALLGACVHSKKFDKIDGFFQELPGNLGVVPDVVSYNIIVNAFCE 185
Query: 100 ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCG 136
L+ AL V DEM ++ + + NTLLNA G
Sbjct: 186 MGSLDSALSVLDEMEKVGLEPDLITFNTLLNAFYQNG 222
>gi|356521277|ref|XP_003529283.1| PREDICTED: pentatricopeptide repeat-containing protein At1g55890,
mitochondrial-like [Glycine max]
Length = 379
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQIL-HQLKHDTRVIPEEIIFCNVISFYGRARLLEH 105
FR Y+ + +L A+ F ++ IL HQ ++ I E +IS YG++ + +H
Sbjct: 52 FRKKTGIYEDTVRRLAGARRFRWVRDILEHQKQYSD--ISNEGFSARLISLYGKSGMTKH 109
Query: 106 ALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
A +VFDEMP N RTV SLN LL A L K D ++ELF
Sbjct: 110 ARKVFDEMPQRNCSRTVLSLNALLAAYLHSHKYDVVQELF 149
>gi|359496212|ref|XP_003635178.1| PREDICTED: pentatricopeptide repeat-containing protein At1g55890,
mitochondrial-like [Vitis vinifera]
Length = 379
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 57/102 (55%), Gaps = 3/102 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQIL-HQLKHDTRVIPEEIIFCNVISFYGRARLL 103
K FR +Y+ + L +AK ++ IL HQ +++ I E+ +++ YG A +
Sbjct: 51 KRFRSRYGYYEKAVLTLAKAKKLSFIEDILEHQEQYNE--ISTEVFAVRLMTLYGTAGMF 108
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+HA ++FDE+P N +RTV S N LL+A + K D++ F
Sbjct: 109 DHAHKLFDELPKLNCERTVMSFNALLSACVNSKKFDKIDGFF 150
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 40 EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR 99
E P L R ++ ++ +++ +K FD++ +L + ++P+ + + +++ +
Sbjct: 117 ELPKLNCER-TVMSFNALLSACVNSKKFDKIDGFFQELPGNLGIVPDVVSYNILVNAFCE 175
Query: 100 ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCG 136
L+ AL V DEM ++ + + NTLLNA G
Sbjct: 176 MGSLDSALSVLDEMEKVGLEPDLITFNTLLNAFYQNG 212
>gi|15231886|ref|NP_188076.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274210|sp|Q9LUD6.1|PP230_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g14580, mitochondrial; Flags: Precursor
gi|9294380|dbj|BAB02390.1| unnamed protein product [Arabidopsis thaliana]
gi|119935972|gb|ABM06049.1| At3g14580 [Arabidopsis thaliana]
gi|332642020|gb|AEE75541.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 405
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 62/113 (54%), Gaps = 2/113 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR-ARLLEHALQVFDE 112
Y L+I K G+AKM+DE+++++ +K + R E F N++ YG A + A+++
Sbjct: 98 YALMINKFGQAKMYDEIEEVMRTIKLEKRCRFSEEFFYNLMRIYGNLAGRINRAIEILFG 157
Query: 113 MPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKI 165
MP F + KS N +LN L++ D + ++F+S + + D C N+ I
Sbjct: 158 MPDFGCWPSSKSFNFILNLLVSAKLFDEIHKIFVSAPKLGVEI-DACCLNILI 209
>gi|199601721|dbj|BAG70980.1| pentatricopeptide (PPR) repeat-containing protein [Musa balbisiana]
Length = 788
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 10/132 (7%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
++L +HP AL F+ FR++ Y II L RA M + + I
Sbjct: 150 AVLRGARHPDHALHFFRWVEKTG----------FRHDPDTYREIILLLARASMLNHARCI 199
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L D V P E +F ++I YG AR+ + A+++F +P V RTV+S + + A+L
Sbjct: 200 LLDDMPDRLVPPSEDMFASLIEGYGCARIPQEAVKIFRRLPELGVTRTVRSYDAVFKAIL 259
Query: 134 TCGKLDRMKELF 145
G++ + LF
Sbjct: 260 RSGRVAMARRLF 271
>gi|297746144|emb|CBI16200.3| unnamed protein product [Vitis vinifera]
Length = 1093
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 65/116 (56%), Gaps = 13/116 (11%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+++ Y ++ KL R++ F+ ++ +L L+ + + E +F +I YG++++ E A
Sbjct: 480 FKHDYPSYSALVYKLARSRNFEAVETLLDYLQ-NINIRCRETLFIALIQHYGKSQMPEKA 538
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALL-------TCGKLDRMKELF-----ISFNL 150
+++F MPSFN RT+ S NTLLN L+ G DR ++ ISFN+
Sbjct: 539 VELFQRMPSFNCHRTLVSFNTLLNVLVENDRFLDAIGIFDRSTKMGFRRNSISFNI 594
>gi|224072823|ref|XP_002303899.1| predicted protein [Populus trichocarpa]
gi|222841331|gb|EEE78878.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 64/115 (55%), Gaps = 6/115 (5%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
+ F+ + Y ++ KL R + F ++++L ++ D V +E IF + YG+A+L+
Sbjct: 57 RGFKPDYPSYAALLYKLARCQDFGAVEEVLRYVE-DKNVHCQETIFIALFQHYGKAQLVH 115
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF-----ISFNLKAIA 154
A+++F+ M FN RT +SLN+LLN L+ G ELF + F L ++A
Sbjct: 116 KAVELFNRMTRFNCVRTSQSLNSLLNVLVDNGWFLEANELFDKGYEMGFRLNSVA 170
>gi|225462369|ref|XP_002267684.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14580,
mitochondrial-like [Vitis vinifera]
Length = 393
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR-ARLL 103
K F+ N Y L+I KL +A+MFD ++ ++ LK D + ++ F NVI YG A
Sbjct: 79 KDFKPNEALYTLVINKLAQARMFDAIEDVIKTLKIDKQCRLSDVFFYNVIKVYGNVAGQP 138
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNL 163
+ A++ +MP F+ +VK+ N +LN L++ + D + +++ + + D C N+
Sbjct: 139 DRAVETLFDMPKFHCWPSVKTFNLVLNMLVSAKRFDVVHKVYAGAPELGVEI-DACCLNI 197
>gi|147778708|emb|CAN60667.1| hypothetical protein VITISV_028261 [Vitis vinifera]
Length = 393
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR-ARLL 103
K F+ N Y L+I KL +A+MFD ++ ++ LK D + ++ F NVI YG A
Sbjct: 79 KDFKPNEALYTLVINKLAQARMFDAIEDVIKTLKIDKQCRLSDVFFYNVIKVYGNVAGRP 138
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNL 163
+ A++ +MP F+ +VK+ N +LN L++ + D + +++ + + D C N+
Sbjct: 139 DRAVETLFDMPKFHCWPSVKTFNLVLNMLVSAKRFDVVHKVYAGAPELGVEI-DACCLNI 197
>gi|18398767|ref|NP_565439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216725|sp|Q9ZU67.1|PP162_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g18520, mitochondrial; Flags: Precursor
gi|4218007|gb|AAD12215.1| expressed protein [Arabidopsis thaliana]
gi|21617890|gb|AAM66940.1| membrane-associated salt-inducible protein like [Arabidopsis
thaliana]
gi|330251683|gb|AEC06777.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 418
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 76/148 (51%), Gaps = 17/148 (11%)
Query: 1 MNKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITK 60
M+KAK S L + P AL ++K+ + N+ PL RY + +L + +
Sbjct: 33 MSKAK--------SKLRKVQDPDKALAIYKSVSNNSTS----PLSS-RYAM---ELTVQR 76
Query: 61 LGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR 120
L +++ F +++ ++ K++ + I E +I YGRA + +HA+++F+EM R
Sbjct: 77 LAKSQRFSDIEALIESHKNNPK-IKTETFLSTLIRSYGRASMFDHAMKMFEEMDKLGTPR 135
Query: 121 TVKSLNTLLNALLTCGKLDRMKELFISF 148
TV S N LL A L +R+ +LF F
Sbjct: 136 TVVSFNALLAACLHSDLFERVPQLFDEF 163
>gi|255580552|ref|XP_002531100.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529296|gb|EEF31265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 483
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 22 PKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT 81
P AL LF + N FR++ Y ++ KL R++ F+ ++ +L L+ D
Sbjct: 61 PDKALSLFHDYLQNG----------FRHDYPSYSALVYKLARSRRFEAVETVLGYLQ-DF 109
Query: 82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRM 141
V + +F + YG+ L+ A+++F+EM FN RT++S N LLN L+ +L
Sbjct: 110 NVRCRDTLFIALFEHYGKVGLVAKAIRLFNEMTGFNCIRTLQSFNALLNVLVDNDRLFDA 169
Query: 142 KELF 145
K+LF
Sbjct: 170 KQLF 173
>gi|225435096|ref|XP_002281474.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07740,
mitochondrial-like [Vitis vinifera]
Length = 501
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 65/116 (56%), Gaps = 13/116 (11%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+++ Y ++ KL R++ F+ ++ +L L+ + + E +F +I YG++++ E A
Sbjct: 118 FKHDYPSYSALVYKLARSRNFEAVETLLDYLQ-NINIRCRETLFIALIQHYGKSQMPEKA 176
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALL-------TCGKLDRMKELF-----ISFNL 150
+++F MPSFN RT+ S NTLLN L+ G DR ++ ISFN+
Sbjct: 177 VELFQRMPSFNCHRTLVSFNTLLNVLVENDRFLDAIGIFDRSTKMGFRRNSISFNI 232
>gi|15231160|ref|NP_187922.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75311241|sp|Q9LK58.1|PP225_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g13150
gi|10172602|dbj|BAB01406.1| unnamed protein product [Arabidopsis thaliana]
gi|66792658|gb|AAY56431.1| At3g13150 [Arabidopsis thaliana]
gi|332641781|gb|AEE75302.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 551
Score = 62.0 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 54 YDLIITKLGRAKMFDEMQQIL-HQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDE 112
Y I +L AK F + ++L +Q K D I E ++ YG + + EHA ++FDE
Sbjct: 90 YSAFIRRLREAKKFSTIDEVLQYQKKFDD--IKSEDFVIRIMLLYGYSGMAEHAHKLFDE 147
Query: 113 MPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
MP N +RTVKS N LL+A + KLD + F
Sbjct: 148 MPELNCERTVKSFNALLSAYVNSKKLDEAMKTF 180
>gi|224064366|ref|XP_002301440.1| predicted protein [Populus trichocarpa]
gi|222843166|gb|EEE80713.1| predicted protein [Populus trichocarpa]
Length = 503
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 9/139 (6%)
Query: 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMF 67
+P +L+ +L QK+P ALQ+FK+ A D + +N Y +I+ LG +
Sbjct: 10 TPTQLSQILRSQKNPLTALQIFKD----AKD----KYPSYHHNGPVYATMISILGNSDRI 61
Query: 68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNT 127
EM++++ Q++ D+ ++ +F I Y A + A+ +F +P FN +S NT
Sbjct: 62 AEMKEVIDQMRDDS-CECKDSVFVTAIKTYASAGQISEAVSLFKNIPKFNCVNWTESFNT 120
Query: 128 LLNALLTCGKLDRMKELFI 146
LL L+ KL+ F+
Sbjct: 121 LLQILVKESKLETAHRFFL 139
>gi|255555097|ref|XP_002518586.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542431|gb|EEF43973.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 377
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
FR Y+ I +L AK F+ +++IL K + I +E +I YG++ + +++
Sbjct: 54 FRTKTGIYEETIRRLAIAKRFNWIEEILEDQKK-YKDIHKEGYNARLIRLYGKSNMFDNS 112
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+VFDEMP N +RTV S N LL A +T K D + LF
Sbjct: 113 RKVFDEMPDRNCKRTVVSFNALLAACVTSKKFDEVDGLF 151
>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 665
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/101 (35%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
K F++ L Y ++I KLGR D +Q +L Q+K + E++ F NVI+ Y R L E
Sbjct: 73 KAFQHTQLTYQIMIEKLGRECDVDGVQYLLQQMKLEGISCSEDL-FINVINTYRRVGLAE 131
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
AL++F + F Q TVK N LL+A+L+ + ++ ++
Sbjct: 132 QALKMFYRIREFGCQPTVKIYNHLLDAMLSENRFQMIEPIY 172
>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580 [Vitis vinifera]
gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 73/146 (50%), Gaps = 9/146 (6%)
Query: 9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFD 68
P +A+++ QK+P AL++F + F++ LL Y +I KLG F+
Sbjct: 7 PKHVAAVVKYQKNPLKALEIFNSVKKE---------DGFKHTLLTYKGMIEKLGFHGEFE 57
Query: 69 EMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTL 128
M+++L + + + E ++ + YGR ++ A+ VF+ M FN + +V+S N +
Sbjct: 58 AMEEVLAETRMNIDNGLLEGVYIGAMRNYGRKGKIQEAVDVFERMDFFNCEPSVQSYNAI 117
Query: 129 LNALLTCGKLDRMKELFISFNLKAIA 154
+N L+ D+ ++++ K I
Sbjct: 118 MNILVEYRYFDQAHKVYMRMRDKGIV 143
>gi|449454724|ref|XP_004145104.1| PREDICTED: pentatricopeptide repeat-containing protein At1g61870,
mitochondrial-like [Cucumis sativus]
gi|449471723|ref|XP_004153390.1| PREDICTED: pentatricopeptide repeat-containing protein At1g61870,
mitochondrial-like [Cucumis sativus]
gi|449530564|ref|XP_004172264.1| PREDICTED: pentatricopeptide repeat-containing protein At1g61870,
mitochondrial-like [Cucumis sativus]
Length = 405
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 5/137 (3%)
Query: 16 LHLQKHPKLALQLFK---NPNPNANDTEAPPLKP-FRYNLLHYDLIITKLGRAKMFDEMQ 71
L ++ + AL L K NP + A L P F + + + + I+KL + K FD ++
Sbjct: 39 LSAKQKSRAALSLLKTEENPERIIDICRAASLTPEFHLDRIAFSVAISKLSKFKHFDGIR 98
Query: 72 QILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA 131
+ L +LK + E C+ I YG+A +L+HA++ F ++ V+ +VK+LN LL A
Sbjct: 99 RFLEELKSRPDLKNERFA-CHAIVLYGQANMLDHAIRTFKQIDELGVRHSVKTLNALLFA 157
Query: 132 LLTCGKLDRMKELFISF 148
+K +++ F
Sbjct: 158 CNLAKDYKELKRVYMEF 174
>gi|449434360|ref|XP_004134964.1| PREDICTED: uncharacterized protein LOC101207147 [Cucumis sativus]
Length = 2802
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 56/101 (55%), Gaps = 5/101 (4%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLK--HDTRVIPEEIIFCNVISFYGRARLLE 104
FR+ YD + L K F ++ I+ K D +V E +I YG+A +
Sbjct: 1307 FRHQKGTYDSTVRLLAVRKKFSLIEDIIEAQKKYEDIKV---EGFATRLIKLYGKAGMFS 1363
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
HA ++FDE+P N +RTVKS N+LL + + +LD+++++F
Sbjct: 1364 HARKLFDELPELNCERTVKSFNSLLASCVKSKELDQVEKIF 1404
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILH-QLKHDTRVIPEEIIFCNVISFYGRARLL 103
K FR YD + L K F +++I+ Q K+D I EE +I YG+A +
Sbjct: 925 KQFRRKNDTYDSTVRFLAVRKKFSMIEEIIEAQKKYDE--IKEEGFVIRLIRLYGKAGMF 982
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
A ++FDE+P +RTV+S N LL + + + D+++++F
Sbjct: 983 SQARKLFDELPELKCERTVRSFNALLVSCVKSKEFDQVEKIF 1024
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 65 KMFDEMQQILH-QLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVK 123
K F ++ I+ Q K++ I EE +I YG+A + HA ++FDE+P N +RTVK
Sbjct: 1724 KKFSMIEDIIEAQKKYEE--IKEEGFAIRLIKLYGKAGMFSHARKLFDELPELNCERTVK 1781
Query: 124 SLNTLLNALLTCGKLDRMKELF 145
S N LL + + ++++ +F
Sbjct: 1782 SFNALLTSCANSKEFEQLETMF 1803
>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 735
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 73/146 (50%), Gaps = 9/146 (6%)
Query: 9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFD 68
P +A++L QK P AL +F + F++ L Y +I KLG FD
Sbjct: 7 PKHVAAVLKYQKDPLKALSIFNSVKKE---------DGFKHTFLTYKRMIEKLGFHGEFD 57
Query: 69 EMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTL 128
M+++L +++ + E ++ + + YGR ++ A+ VF+ M +N + ++ S N +
Sbjct: 58 AMERVLMEMRLNVDNSLLEGVYVSAMRNYGRKGKVQEAVDVFERMDFYNCEPSIFSYNAI 117
Query: 129 LNALLTCGKLDRMKELFISFNLKAIA 154
+N L+ G ++ ++++ + IA
Sbjct: 118 MNILVEYGYFNQAHKVYLRMKHEGIA 143
Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 10/120 (8%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+++I L +A+ E +L +++ + +IP+ + F VIS + L+ A Q+
Sbjct: 502 NIITYNILIESLCKARKVTEALDLLEEIR-NRGLIPDPVSFGTVISGFCNNGDLDEAYQL 560
Query: 110 FDEMP-SFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLC 160
F M + + TV + N ++NA +D ++LF K ++DG C
Sbjct: 561 FRRMEQQYRICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFC 620
>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
Length = 761
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 9/138 (6%)
Query: 9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFD 68
P +A++L QK P AL++F + F+++LL Y II KLG F
Sbjct: 7 PKHVAAVLKQQKDPLKALEMF---------NKVKREDGFKHSLLTYKCIIQKLGFHGNFV 57
Query: 69 EMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTL 128
M+ +L + + D E ++ + YGR ++ A+ VF+ M +N + +V S N +
Sbjct: 58 AMENVLAETRMDIDNSLLEGVYIGAMKSYGRKGKVQEAVDVFERMDFYNCEPSVLSYNAI 117
Query: 129 LNALLTCGKLDRMKELFI 146
+N L+ G + ++F+
Sbjct: 118 MNILVESGYFKQAHKVFL 135
>gi|356531124|ref|XP_003534128.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g05600-like [Glycine max]
Length = 502
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 72/140 (51%), Gaps = 11/140 (7%)
Query: 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKP-FRYNLLHYDLIITKLGRAKM 66
+P L+ ++ QK+P AL +F EA P + +N Y +I+ LG +
Sbjct: 10 TPTYLSQIIKTQKNPLKALNIF---------NEAKSRYPNYYHNGPVYATMISILGTSGR 60
Query: 67 FDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLN 126
+EM+ ++ Q+K D+ ++ +F +VI Y A L++ A+ ++ +P FN +S N
Sbjct: 61 LNEMRDVIEQMKEDS-CECKDSVFVSVIKTYANAGLVDEAISLYKSIPRFNCVNWTESFN 119
Query: 127 TLLNALLTCGKLDRMKELFI 146
T+L ++ +L+ LF+
Sbjct: 120 TMLQIMVKENRLEIAHRLFV 139
>gi|357449161|ref|XP_003594857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483905|gb|AES65108.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 647
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 67/126 (53%), Gaps = 6/126 (4%)
Query: 21 HPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD 80
H L Q+FK+P+ +T + ++ L + +I + F ++Q+LHQ+K +
Sbjct: 39 HHSLPPQIFKSPS----NTSSHKWGSYKLGDLSFYSLIENFSNSLDFTSLEQLLHQMKCE 94
Query: 81 TRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPS-FNVQRTVKSLNTLLNALLTCGKLD 139
RV E+ F + YG+A L + AL +F M + F+ ++TVKS NT+LN ++ G D
Sbjct: 95 NRVFIEKS-FIIMFKAYGKAHLPQKALDLFHRMGAEFHCKQTVKSFNTVLNVVIQEGCFD 153
Query: 140 RMKELF 145
E +
Sbjct: 154 LALEFY 159
>gi|295828284|gb|ADG37811.1| AT1G07740-like protein [Neslia paniculata]
Length = 175
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 67 FDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLN 126
FD + QIL ++H V E +F +I YG+A ++ A+ VF M SF+ RT++SLN
Sbjct: 2 FDAVDQILRLIRH-RNVRCRESLFMALIQHYGKAGSVDKAVNVFHNMTSFDCVRTIQSLN 60
Query: 127 TLLNALLTCGKLDRMKELF 145
TL+N L+ +L++ K LF
Sbjct: 61 TLINVLVDNSELEKAKNLF 79
>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Cucumis sativus]
Length = 857
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 75/146 (51%), Gaps = 11/146 (7%)
Query: 1 MNKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITK 60
MN+A P +A+++ Q P AL++F N TE F++ L Y +I K
Sbjct: 1 MNRA--LQPKHVAAVIRYQNDPLNALKMF-----NQVKTE----DGFKHTLETYKCMIEK 49
Query: 61 LGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR 120
LG F+ M+ +L +++ + E ++ ++ YGR ++ A+ VF+ M ++ +
Sbjct: 50 LGLHGKFEAMEDVLAEMRKNVDSKMLEGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEP 109
Query: 121 TVKSLNTLLNALLTCGKLDRMKELFI 146
+V+S N ++N L+ G + ++++
Sbjct: 110 SVQSYNAIMNILVEYGYFSQAHKVYM 135
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
++ Y+L++ L + + IL+ IP+ F +I Y + R ++ A+++
Sbjct: 425 DIWTYNLVVNGLCKMGCLSDANGILNDAIAKG-CIPDIFTFNTLIDGYCKQRNMDKAIEI 483
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
D M S + V + NTLLN L KLD + + F
Sbjct: 484 LDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTF 519
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ ++ L +A+ D + + + P I + +I + + R + A+++
Sbjct: 495 DVITYNTLLNGLCKARKLDNVVDTFKAML-EKGCTPNIITYNILIESFCKDRKVSEAMEL 553
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFIS 147
F EM + + + +L TL+ L + G+LD+ ELF++
Sbjct: 554 FKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVT 591
>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g74580-like [Cucumis
sativus]
Length = 877
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 75/146 (51%), Gaps = 11/146 (7%)
Query: 1 MNKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITK 60
MN+A P +A+++ Q P AL++F N TE F++ L Y +I K
Sbjct: 1 MNRA--LQPKHVAAVIRYQNDPLNALKMF-----NQVKTE----DGFKHTLETYKCMIEK 49
Query: 61 LGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR 120
LG F+ M+ +L +++ + E ++ ++ YGR ++ A+ VF+ M ++ +
Sbjct: 50 LGLHGKFEAMEDVLAEMRKNVDSKMLEGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEP 109
Query: 121 TVKSLNTLLNALLTCGKLDRMKELFI 146
+V+S N ++N L+ G + ++++
Sbjct: 110 SVQSYNAIMNILVEYGYFSQAHKVYM 135
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
++ Y+L++ L + + IL+ IP+ F +I Y + R ++ A+++
Sbjct: 425 DIWTYNLVVNGLCKMGCLSDANGILNDAIAKG-CIPDIFTFNTLIDGYCKQRNMDKAIEI 483
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
D M S + V + NTLLN L KLD + + F
Sbjct: 484 LDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTF 519
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ ++ L +A+ D + + + P I + +I + + R + A+++
Sbjct: 495 DVITYNTLLNGLCKARKLDNVVDTFKAM-LEKGCTPNIITYNILIESFCKDRKVSEAMEL 553
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFIS 147
F EM + + + +L TL+ L + G+LD+ ELF++
Sbjct: 554 FKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVT 591
>gi|338762831|gb|AEI98618.1| hypothetical protein 111O18.5 [Coffea canephora]
Length = 417
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 11/143 (7%)
Query: 5 KPT--SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLG 62
KP+ S R S L P AL+++ + +PN PL RY + + +L
Sbjct: 37 KPSTISTSRAKSQLRYVYDPDKALEIYSSVSPNYTS----PLSS-RYTQ---EYTVRRLA 88
Query: 63 RAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTV 122
++ F +++ L K+D + I +E ++I YG A + +HAL+ F+EM R+
Sbjct: 89 KSHRFSDIESFLESHKNDPK-ITQEPFLSSLIRSYGLAGMFDHALKTFNEMDDLGTPRST 147
Query: 123 KSLNTLLNALLTCGKLDRMKELF 145
S N LL+A + R ELF
Sbjct: 148 VSFNALLSACNSSKNFGRAPELF 170
>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g74580
gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 763
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/148 (22%), Positives = 71/148 (47%), Gaps = 9/148 (6%)
Query: 6 PTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAK 65
P P + +++ QK P AL++F + F++ L Y +I KLG
Sbjct: 4 PLLPKHVTAVIKCQKDPMKALEMFNSMRKEVG---------FKHTLSTYRSVIEKLGYYG 54
Query: 66 MFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSL 125
F+ M+++L ++ + E ++ + YGR ++ A+ VF+ M ++ + TV S
Sbjct: 55 KFEAMEEVLVDMRENVGNHMLEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSY 114
Query: 126 NTLLNALLTCGKLDRMKELFISFNLKAI 153
N +++ L+ G D+ ++++ + I
Sbjct: 115 NAIMSVLVDSGYFDQAHKVYMRMRDRGI 142
>gi|449479641|ref|XP_004155661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g55890,
mitochondrial-like [Cucumis sativus]
Length = 398
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLK--HDTRVIPEEIIFCNVISFYGRARLLE 104
FR+ +D + L K F ++ I+ K D +V E +I YG+A +
Sbjct: 70 FRHKKGTFDSTVRLLAVRKKFSLIEDIIEAQKKYEDIKV---EGFATRLIKLYGKAGMFS 126
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
HA ++FDE+P N +RTVKS N+LL + + + D+++++F
Sbjct: 127 HARKLFDELPELNCERTVKSFNSLLASCVKSKEFDQVEKIF 167
>gi|449479638|ref|XP_004155660.1| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
mitochondrial-like [Cucumis sativus]
Length = 398
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILH-QLKHDTRVIPEEIIFCNVISFYGRARLL 103
K FR YD + L K F +++I+ Q K+D I EE +I YG+A +
Sbjct: 68 KQFRRKNDTYDSTVRFLAVRKKFSMIEEIIEAQKKYDE--IKEEGFVIRLIRLYGKAGMF 125
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
A ++FDE+P +RTV+S N LL + + + D+++++F
Sbjct: 126 SQARKLFDELPELKCERTVRSFNALLVSCVKSKEFDQVEKIF 167
>gi|401420700|ref|XP_003874839.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322491075|emb|CBZ26340.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 278
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 19/144 (13%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
R N+ HY ++T RA D I Q+K + +V P + ++I+ A+ L+ AL
Sbjct: 47 RRNVFHYTTLLTACTRAGQMDAAMMIFRQMKAN-QVKPNVYTYTSLINGCANAKKLDLAL 105
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCGK-------LDRMKELFISFN-LKAIAVLD-- 157
++F EM V VK++ L++ CG+ LD+ +ELFI+ N L A +D
Sbjct: 106 RIFAEMRLVEVPPNVKTMTALISVCSRCGQWKKGFQVLDQCEELFIAPNALTYTAAMDGC 165
Query: 158 ---GLCSN----LKIIMND-SQVR 173
G+C+ L+ M D SQVR
Sbjct: 166 RRAGVCTPAIALLETRMTDPSQVR 189
>gi|357472349|ref|XP_003606459.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355507514|gb|AES88656.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 418
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 15/134 (11%)
Query: 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMF 67
+P L +++ Q+ P + L+LF A FR+N + + I KLG AKM+
Sbjct: 96 TPEELRNVIANQRDPLVCLELFH---------WASHQPRFRHNESSFHVTIKKLGDAKMY 146
Query: 68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM-----PSFNVQRTV 122
EM +++QL R I E +F +I ++ AR L A+ VF M P+F + ++
Sbjct: 147 QEMDDVVNQLL-AVRSIGNEALFNMIIYYFTEARKLTRAVIVFKHMKCSRNPNFGFRPSI 205
Query: 123 KSLNTLLNALLTCG 136
++ N L A L+ G
Sbjct: 206 RTYNILFGAFLSRG 219
>gi|154346372|ref|XP_001569123.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134066465|emb|CAM44258.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 278
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 9/119 (7%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
R N+ HY ++T RA D + Q+K + +V P + +I+ A+ L+ AL
Sbjct: 47 RRNVFHYTTVLTACTRAGQMDAAMTVFRQMKVN-QVTPNVYTYTTLINGCANAKNLDLAL 105
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCGK-------LDRMKELFISFN-LKAIAVLDG 158
++F EM V VK++ L++ CG+ LD+ +ELFI+ N L A +DG
Sbjct: 106 RIFAEMRLLEVPPNVKTMTALISVCSRCGQWKKGFQVLDQCEELFIAPNALTYTAAMDG 164
>gi|297849542|ref|XP_002892652.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338494|gb|EFH68911.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 403
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 4/135 (2%)
Query: 3 KAKPTSPFRLASLLHLQKHPKLALQLFK---NPNPNANDTEAPPLKP-FRYNLLHYDLII 58
++ +S F L SL QK + L L K NPN + L P + + + + + +
Sbjct: 23 QSSSSSIFTLNSLTSKQKKSRATLSLLKSENNPNRILEICRSASLTPDYHVDRIIFSVAV 82
Query: 59 TKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNV 118
L + K F + Q+L + E I YGRA +L+ ++Q F ++ + +
Sbjct: 83 VTLAKEKHFVAVSQLLDGFIQNQPDPKSESFAVRAIILYGRANMLDRSIQTFRDLEQYEI 142
Query: 119 QRTVKSLNTLLNALL 133
RTVKSLN LL A L
Sbjct: 143 PRTVKSLNALLFACL 157
>gi|297810021|ref|XP_002872894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318731|gb|EFH49153.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1162
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 11/152 (7%)
Query: 3 KAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLG 62
K+ SP R+ L+ Q P LA ++F + N FR++ Y ++I KLG
Sbjct: 47 KSPIGSPTRVQKLIASQSDPLLAKEIFDYASQQPN---------FRHSQSSYLILILKLG 97
Query: 63 RAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTV 122
RA+ F+ + +L + + + E IF +I Y A++ E L+ F +M FN
Sbjct: 98 RARYFNLIDDVLAKHRSSGYPLTGE-IFTYLIKVYAEAKIPEKVLRTFYKMLEFNFTPQP 156
Query: 123 KSLNTLLNALLT-CGKLDRMKELFISFNLKAI 153
K LN +L L++ G L + ELF S L +
Sbjct: 157 KHLNRILEVLVSHRGYLQKAFELFKSSRLHGV 188
>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 763
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/148 (25%), Positives = 73/148 (49%), Gaps = 9/148 (6%)
Query: 6 PTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAK 65
P P + +++ QK P AL++F N+ E F++ L Y II KLG
Sbjct: 4 PLLPKHVTTVIRCQKDPMKALEMF-----NSMRKE----DGFKHTLSTYRSIIEKLGLYG 54
Query: 66 MFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSL 125
F+ M+++L ++ + E ++ + YGR ++ A+ VF+ M ++ + TV S
Sbjct: 55 KFEAMEEVLVDMRQNVGNHMLEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSY 114
Query: 126 NTLLNALLTCGKLDRMKELFISFNLKAI 153
N +++ L+ G D+ ++++ + I
Sbjct: 115 NAIMSILVDSGYFDQAHKVYMRMRDRGI 142
>gi|357505557|ref|XP_003623067.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498082|gb|AES79285.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 647
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMF 67
+P L+SL+ Q P +LQ+F + A + PP F +N Y I KL + + F
Sbjct: 48 NPKLLSSLISRQHDPHFSLQIFLH----AQNHHKPP---FSHNPQTYQAIFLKLSKFRCF 100
Query: 68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNT 127
E++ +L L+ E VI YG A AL+ F + SF ++ +V+S+N
Sbjct: 101 SEIESLLAGLRSSPPHCCGEEPIVTVIRGYGLAGKPVRALKTFLRIESFGIRPSVRSINA 160
Query: 128 LLNALL 133
LLN+L+
Sbjct: 161 LLNSLV 166
>gi|225432035|ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Vitis vinifera]
Length = 666
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 68/132 (51%), Gaps = 13/132 (9%)
Query: 5 KPTSPFRLASLLHLQKHP---KLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKL 61
+ +S + A +L KH LAL+ FK+ AN K F++ L Y ++I KL
Sbjct: 36 EKSSVLKEADVLKRLKHEHDITLALEYFKSI---ANS------KSFKHTPLTYQMMIEKL 86
Query: 62 GRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRT 121
+ D +Q +L Q+K + E++ F +VI Y RA E AL+ F M F V+ T
Sbjct: 87 ASEREMDCVQYLLQQMKLEGISCSEDL-FISVIGSYRRAGSSEQALKTFYRMQDFRVKPT 145
Query: 122 VKSLNTLLNALL 133
VK N +L+ALL
Sbjct: 146 VKIYNHILDALL 157
>gi|357488057|ref|XP_003614316.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515651|gb|AES97274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 504
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 11/139 (7%)
Query: 9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKP-FRYNLLHYDLIITKLGRAKMF 67
P L ++ QK+P AL++F EA P + +N Y +I LG +
Sbjct: 13 PTYLTQIIRTQKNPLKALEIF---------NEAKLKYPKYSHNGPVYATMINILGTSGRL 63
Query: 68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNT 127
EM ++ Q+K D+ ++ +F + I Y + L++ A+ ++ +P FN +S NT
Sbjct: 64 KEMSDLIEQMKEDS-CECKDSVFVSAIKTYAKEGLVDEAISLYKNIPQFNCVNWTQSFNT 122
Query: 128 LLNALLTCGKLDRMKELFI 146
LL ++ KL+ LF+
Sbjct: 123 LLEIMVNENKLEDAHSLFV 141
>gi|296083214|emb|CBI22850.3| unnamed protein product [Vitis vinifera]
Length = 724
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 68/132 (51%), Gaps = 13/132 (9%)
Query: 5 KPTSPFRLASLLHLQKHP---KLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKL 61
+ +S + A +L KH LAL+ FK+ AN K F++ L Y ++I KL
Sbjct: 36 EKSSVLKEADVLKRLKHEHDITLALEYFKSI---ANS------KSFKHTPLTYQMMIEKL 86
Query: 62 GRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRT 121
+ D +Q +L Q+K + E++ F +VI Y RA E AL+ F M F V+ T
Sbjct: 87 ASEREMDCVQYLLQQMKLEGISCSEDL-FISVIGSYRRAGSSEQALKTFYRMQDFRVKPT 145
Query: 122 VKSLNTLLNALL 133
VK N +L+ALL
Sbjct: 146 VKIYNHILDALL 157
>gi|15221069|ref|NP_172629.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75200551|sp|Q9SAB4.1|PPR33_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g11630, mitochondrial; Flags: Precursor
gi|4835794|gb|AAD30260.1|AC007296_21 Strong similarity to gi|3367521 F8K4.8 from Arabidopsis thaliana
BAC gb|AC004392 [Arabidopsis thaliana]
gi|14326576|gb|AAK60332.1|AF385742_1 At1g11630/F25C20_22 [Arabidopsis thaliana]
gi|19548051|gb|AAL87389.1| At1g11630/F25C20_22 [Arabidopsis thaliana]
gi|21593339|gb|AAM65288.1| putative membrane-associated salt-inducible protein [Arabidopsis
thaliana]
gi|332190642|gb|AEE28763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 405
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 4/135 (2%)
Query: 3 KAKPTSPFRLASLLHLQKHPKLALQLFK---NPNPNANDTEAPPLKP-FRYNLLHYDLII 58
K+ +S F L SL QK + L L K NP+ + L P + + + + + +
Sbjct: 23 KSSSSSIFTLKSLTSKQKKSRDTLSLLKSENNPDRILEICRSTSLSPDYHVDRIIFSVAV 82
Query: 59 TKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNV 118
L R K F + Q+L + E I YGRA +L+ ++Q F + + +
Sbjct: 83 VTLAREKHFVAVSQLLDGFIQNQPDPKSESFAVRAIILYGRANMLDRSIQTFRNLEQYEI 142
Query: 119 QRTVKSLNTLLNALL 133
RTVKSLN LL A L
Sbjct: 143 PRTVKSLNALLFACL 157
>gi|224056581|ref|XP_002298921.1| predicted protein [Populus trichocarpa]
gi|222846179|gb|EEE83726.1| predicted protein [Populus trichocarpa]
Length = 326
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 77/155 (49%), Gaps = 14/155 (9%)
Query: 22 PKLALQLFKN-PNPNANDT---EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQL 77
P +++F+N +PN+ + + K ++ N Y +I KL +AK FD ++ I+ ++
Sbjct: 10 PNEVIKIFENLKDPNSIISVWNQYSKRKDYKPNEALYTQVINKLAQAKNFDAIEDIMQKI 69
Query: 78 KHDTRVIPEEIIFCNVISFYGR-ARLLEHALQVFDEMP-SFNVQRTVKSLNTLLNALLTC 135
K D F NVI YG+ A ++ A++ +MP +N VKS N +LN L++
Sbjct: 70 KLDKSCRLSNDFFHNVIKIYGQLAGRIKKAMETLFDMPKGYNCWPNVKSFNLVLNLLVSA 129
Query: 136 GKLDRMKELFISFNLKAIAV--------LDGLCSN 162
D + E+++ + I + + GLC N
Sbjct: 130 KVFDVVHEVYLQAPMLGIEIDVCSLNILIKGLCEN 164
Score = 36.6 bits (83), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNV---ISFYGRARLLEHA 106
N+ ++L++ L AK+FD ++H++ ++ EI C++ I LE A
Sbjct: 115 NVKSFNLVLNLLVSAKVFD----VVHEVYLQAPMLGIEIDVCSLNILIKGLCENGDLEAA 170
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDR 140
V DE P + V++ +TL++ L GK+D
Sbjct: 171 FNVLDEFPKQRCEPNVRTFSTLMHGLCKKGKVDE 204
>gi|376340266|gb|AFB34644.1| hypothetical protein UMN_1072_01, partial [Larix decidua]
Length = 93
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y++ + KL AK FD +++IL ++ E I +I YG A + +HA++ F++M
Sbjct: 17 YEIAVRKLAFAKQFDAIEEILDHSLQVSKPCSESFI-SRIIMLYGIAGMPQHAIKTFNQM 75
Query: 114 PSFNVQRTVKSLNTLLNA 131
S N+ T+KS N LLNA
Sbjct: 76 KSLNISPTIKSFNALLNA 93
>gi|376340264|gb|AFB34643.1| hypothetical protein UMN_1072_01, partial [Larix decidua]
Length = 93
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y++ + KL AK FD +++IL ++ E I +I YG A + +HA++ F++M
Sbjct: 17 YEIAVRKLAFAKQFDAIEEILDHSLQVSKPCSESFI-SRIIMLYGIAGMPQHAIKTFNQM 75
Query: 114 PSFNVQRTVKSLNTLLNA 131
S N+ T+KS N LLNA
Sbjct: 76 KSLNISLTIKSFNALLNA 93
>gi|295828278|gb|ADG37808.1| AT1G07740-like protein [Capsella grandiflora]
Length = 175
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 67 FDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLN 126
FD + QIL +++ V E +F +I YG+A ++ A+ VF +M SF+ RT++SLN
Sbjct: 2 FDXVDQILRLIRY-RNVRCRESLFIALIQHYGKAGSVDKAVDVFXKMTSFDCVRTIQSLN 60
Query: 127 TLLNALLTCGKLDRMKELF 145
TL+N L+ +L++ K F
Sbjct: 61 TLINVLVDNSELEKAKSFF 79
>gi|297836596|ref|XP_002886180.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297332020|gb|EFH62439.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 421
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 55 DLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMP 114
+L + +L +++ F +++ ++ K++ + I E +I YGRA + +HA+++F+EM
Sbjct: 67 ELTVQRLAKSQRFSDIEALIESHKNNPK-IKTETFLSTLIRSYGRASMFDHAMKMFEEMD 125
Query: 115 SFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
RTV S N LL A L +R+ +LF
Sbjct: 126 QIGTPRTVVSFNALLAACLHSDLFERVPQLF 156
>gi|388512253|gb|AFK44188.1| unknown [Medicago truncatula]
Length = 376
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 40 EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL-HQLKHDTRVIPEEIIFCNVISFYG 98
+A + FR Y+ + +L AK F ++ I+ HQ + I E +I+ YG
Sbjct: 42 KASDIDRFRKKNGIYEDTVRRLAGAKRFRWVRDIIEHQKSYAD--ISNEGFSARLITLYG 99
Query: 99 RARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
++ + HA ++FDEMP N +R+V SLN LL A L + D ++ LF
Sbjct: 100 KSNMHRHAQKLFDEMPQRNCERSVLSLNALLAAYLHSKQYDVVERLF 146
>gi|345288471|gb|AEN80727.1| AT1G07740-like protein, partial [Capsella rubella]
gi|345288473|gb|AEN80728.1| AT1G07740-like protein, partial [Capsella rubella]
gi|345288475|gb|AEN80729.1| AT1G07740-like protein, partial [Capsella rubella]
gi|345288477|gb|AEN80730.1| AT1G07740-like protein, partial [Capsella rubella]
gi|345288479|gb|AEN80731.1| AT1G07740-like protein, partial [Capsella rubella]
gi|345288483|gb|AEN80733.1| AT1G07740-like protein, partial [Capsella rubella]
Length = 177
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 67 FDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLN 126
FD + QIL +++ V E +F +I YG+A ++ A+ VF +M SF+ RT++SLN
Sbjct: 3 FDAVDQILRLIRY-RNVRCRESLFIALIQHYGKAGSVDKAVDVFHKMTSFDCVRTIQSLN 61
Query: 127 TLLNALLTCGKLDRMKELF 145
TL+N L+ +L++ K F
Sbjct: 62 TLINVLVDNSELEKAKSFF 80
>gi|449520100|ref|XP_004167072.1| PREDICTED: pentatricopeptide repeat-containing protein At2g27800,
mitochondrial-like [Cucumis sativus]
Length = 428
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 69/138 (50%), Gaps = 13/138 (9%)
Query: 12 LASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQ 71
L +++ LQ+ P + +LF A FR++ Y++ I KLG AKM++EM
Sbjct: 123 LCNVISLQRDPLVCFELF---------NWASQQPRFRHDDSSYEITIKKLGEAKMYEEMD 173
Query: 72 QILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMP---SFNVQRTVKSLNTL 128
+++Q I E ++ +I F+ AR L A+ +F M + N + ++++ N L
Sbjct: 174 HVVNQAL-AVSSIGSETLYNTMIYFFTEARKLTRAVNIFKHMQNNRNLNCRPSIRTYNLL 232
Query: 129 LNALLTCGKLDRMKELFI 146
A L+ G+ + +++
Sbjct: 233 FTAFLSRGRNTYINHMYM 250
>gi|449459126|ref|XP_004147297.1| PREDICTED: pentatricopeptide repeat-containing protein At2g27800,
mitochondrial-like [Cucumis sativus]
Length = 428
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 69/138 (50%), Gaps = 13/138 (9%)
Query: 12 LASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQ 71
L +++ LQ+ P + +LF A FR++ Y++ I KLG AKM++EM
Sbjct: 123 LCNVISLQRDPLVCFELF---------NWASQQPRFRHDDSSYEITIKKLGEAKMYEEMD 173
Query: 72 QILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMP---SFNVQRTVKSLNTL 128
+++Q I E ++ +I F+ AR L A+ +F M + N + ++++ N L
Sbjct: 174 HVVNQAL-AVSSIGSETLYNTMIYFFTEARKLTRAVNIFKHMQNNRNLNCRPSIRTYNLL 232
Query: 129 LNALLTCGKLDRMKELFI 146
A L+ G+ + +++
Sbjct: 233 FTAFLSRGRNTYINHMYM 250
>gi|295828274|gb|ADG37806.1| AT1G07740-like protein [Capsella grandiflora]
Length = 175
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 67 FDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLN 126
FD + QIL +++ V E +F +I YG+A ++ A+ VF +M SF+ RT++SLN
Sbjct: 2 FDXVDQILRLIRY-RNVRCRESLFXALIQHYGKAGSVDKAVDVFXKMTSFDCVRTIQSLN 60
Query: 127 TLLNALLTCGKLDRMKELF 145
TL+N L+ +L++ K F
Sbjct: 61 TLINVLVDNSELEKAKSFF 79
>gi|357455193|ref|XP_003597877.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87162918|gb|ABD28713.1| Pentatricopeptide repeat [Medicago truncatula]
gi|355486925|gb|AES68128.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 439
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE---EIIFCNVISFYGRARLLEHALQVF 110
YD +++L AK FD ++Q+L Q K +P+ E +I+ YG A +++HAL F
Sbjct: 113 YD-TVSRLAGAKRFDYIEQLLEQQKK----LPQSRREGFVVRIITLYGNAGMIQHALNTF 167
Query: 111 DEMPSFNVQRTVKSLNTLLNALLTCGKLDRM 141
+M F RTVKS N LN L D +
Sbjct: 168 YQMGDFRCVRTVKSFNATLNVLAKSRDFDEI 198
>gi|295828280|gb|ADG37809.1| AT1G07740-like protein [Capsella grandiflora]
Length = 175
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 67 FDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLN 126
FD + QIL +++ V E +F +I YG+A ++ A+ VF +M SF+ RT++SLN
Sbjct: 2 FDXVDQILRLIRY-RNVRCRESLFXALIQHYGKAGSVDKAVDVFRKMTSFDCVRTIQSLN 60
Query: 127 TLLNALLTCGKLDRMKELF 145
TL+N L+ +L++ K F
Sbjct: 61 TLINVLVDNSELEKAKSFF 79
>gi|15224671|ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
gi|75206083|sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g31400, chloroplastic; Flags: Precursor
gi|4589961|gb|AAD26479.1| unknown protein [Arabidopsis thaliana]
gi|330253448|gb|AEC08542.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
Length = 918
Score = 56.2 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 16/115 (13%)
Query: 47 FRYNLLHYDLIITKLGR--------AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYG 98
R NL+ Y+ +I G+ AK FDEMQ+ V P+ I F ++++
Sbjct: 299 LRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQR--------NGVQPDRITFNSLLAVCS 350
Query: 99 RARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153
R L E A +FDEM + +++ V S NTLL+A+ G++D E+ +K I
Sbjct: 351 RGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRI 405
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARL 102
P+K N++ Y +I +A FDE + ++++ + + + + ++S Y +
Sbjct: 401 PVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRY-LGIALDRVSYNTLLSIYTKVGR 459
Query: 103 LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
E AL + EM S +++ V + N LL GK D +K++F
Sbjct: 460 SEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVF 502
Score = 39.7 bits (91), Expect = 0.45, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
+ +++ Y+ ++ G+ +DE++++ ++K + V+P + + +I Y + L + A+
Sbjct: 476 KKDVVTYNALLGGYGKQGKYDEVKKVFTEMKRE-HVLPNLLTYSTLIDGYSKGGLYKEAM 534
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCG 136
++F E S ++ V + L++AL G
Sbjct: 535 EIFREFKSAGLRADVVLYSALIDALCKNG 563
>gi|295828276|gb|ADG37807.1| AT1G07740-like protein [Capsella grandiflora]
Length = 175
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 67 FDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLN 126
FD + QIL +++ V E +F +I YG+A ++ A+ VF +M SF+ RT++SLN
Sbjct: 2 FDXVDQILRLIRY-RNVRCRESLFXALIQHYGKAGSVDKAVDVFRKMTSFDCVRTIQSLN 60
Query: 127 TLLNALLTCGKLDRMKELF 145
TL+N L+ +L++ K F
Sbjct: 61 TLINVLVDNSELEKAKSFF 79
>gi|345288481|gb|AEN80732.1| AT1G07740-like protein, partial [Capsella rubella]
Length = 177
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 67 FDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLN 126
FD + QIL +++ V E +F +I YG+A ++ A+ VF +M SF+ RT++SLN
Sbjct: 3 FDAVDQILRLIRY-RNVRCRESLFIALIQHYGKAGSVDKAVDVFHKMTSFDCVRTIQSLN 61
Query: 127 TLLNALLTCGKLDRMKELF 145
TL+N L+ +L++ K F
Sbjct: 62 TLINVLVDNSELEKAKTFF 80
>gi|295828272|gb|ADG37805.1| AT1G07740-like protein [Capsella grandiflora]
Length = 175
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 67 FDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLN 126
FD + QIL +++ V E +F +I YG+A ++ A+ VF +M SF+ RT++SLN
Sbjct: 2 FDAVDQILRLIRY-RNVRCRESLFMALIQHYGKAGSVDKAVDVFRKMTSFDCVRTIQSLN 60
Query: 127 TLLNALLTCGKLDRMKELF 145
TL+N L+ +L++ K F
Sbjct: 61 TLINVLVDNSELEKAKSFF 79
>gi|295828282|gb|ADG37810.1| AT1G07740-like protein [Capsella grandiflora]
Length = 175
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 67 FDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLN 126
FD + QIL +++ V E +F +I YG+A ++ A+ VF +M SF+ RT++SLN
Sbjct: 2 FDAVDQILXLIRY-RNVRCRESLFXALIQHYGKAGSVDKAVDVFXKMTSFDCVRTIQSLN 60
Query: 127 TLLNALLTCGKLDRMKELF 145
TL+N L+ +L++ K F
Sbjct: 61 TLINVLVDNSELEKAKSFF 79
>gi|146104628|ref|XP_001469878.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134074248|emb|CAM72992.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 278
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 9/119 (7%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
R N+ HY ++T RA D + Q+K + +V P + +I+ A+ L+ AL
Sbjct: 47 RRNVFHYTTVLTACTRAGQMDAAMMVFRQMKAN-QVKPNVYTYTTLINGCANAKKLDLAL 105
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCGK-------LDRMKELFISFN-LKAIAVLDG 158
++F EM V VK++ L++ CG+ LD+ +E FI+ N L A +DG
Sbjct: 106 RIFAEMRLVEVPPNVKTMTALISVCSRCGQWKKGLQVLDQCEEFFIAPNALTYTAAMDG 164
>gi|398024914|ref|XP_003865618.1| hypothetical protein, conserved [Leishmania donovani]
gi|322503855|emb|CBZ38941.1| hypothetical protein, conserved [Leishmania donovani]
Length = 278
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 9/119 (7%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
R N+ HY ++T RA D + Q+K + +V P + +I+ A+ L+ AL
Sbjct: 47 RRNVFHYTTVLTACTRAGQMDAAMMVFRQMKAN-QVKPNVYTYTTLINGCANAKKLDLAL 105
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCGK-------LDRMKELFISFN-LKAIAVLDG 158
++F EM V VK++ L++ CG+ LD+ +E FI+ N L A +DG
Sbjct: 106 RIFAEMRLVEVPPNVKTMTALISVCSRCGQWKKGLQVLDQCEEFFIAPNALTYTAAMDG 164
>gi|156070779|gb|ABU45192.1| unknown [Petunia integrifolia subsp. inflata]
Length = 406
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 68/135 (50%), Gaps = 9/135 (6%)
Query: 11 RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEM 70
+ S L + P L+++ + +D PL RY + + +L ++ F ++
Sbjct: 33 KAKSKLKAEHDPDKVLEIY----SSVSDRYISPLSS-RY---AQEYTVKRLAKSHRFSDI 84
Query: 71 QQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLN 130
+ L K+ ++ I +E ++I YG A + +HAL+++D+M R+ S N LL+
Sbjct: 85 ESFLESHKNSSK-ITQEPFLSSIIRSYGIAGMFDHALKIYDQMDDLGTPRSAISFNVLLS 143
Query: 131 ALLTCGKLDRMKELF 145
A + + DR+++LF
Sbjct: 144 ACVNTKQYDRVRQLF 158
>gi|449445756|ref|XP_004140638.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g05600-like [Cucumis sativus]
gi|449526108|ref|XP_004170056.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g05600-like [Cucumis sativus]
Length = 497
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 9/138 (6%)
Query: 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMF 67
+P L+ ++ Q +P+ A QLFK D +R+N Y +I LG +
Sbjct: 10 TPTCLSQIIRKQNNPQTAYQLFKEAKCRYPD--------YRHNGPVYATMINILGNSGRV 61
Query: 68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNT 127
EM++++ Q++ D+ + + F I Y LLE + +F FN ++ NT
Sbjct: 62 SEMREVMDQMRDDSCECKDSV-FSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNT 120
Query: 128 LLNALLTCGKLDRMKELF 145
LL LL +L +LF
Sbjct: 121 LLEILLKESQLHAACQLF 138
>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Glycine max]
Length = 747
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 70/145 (48%), Gaps = 9/145 (6%)
Query: 9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFD 68
P +A+++ +Q P AL++F + A F++ Y I+ KLG F+
Sbjct: 7 PKHVAAVVKIQTDPLKALEMFNS---------AKSEDGFKHTASTYKCIVQKLGHHGEFE 57
Query: 69 EMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTL 128
EM+++L +++ + E + + YGR ++ A+ F+ M +N +V S N +
Sbjct: 58 EMEKLLSEMRENVNNALLEGAYIEAMKNYGRKGKVQEAVDTFERMDFYNCDPSVHSHNAI 117
Query: 129 LNALLTCGKLDRMKELFISFNLKAI 153
+N L+ G ++ ++++ + +
Sbjct: 118 MNILVEFGYHNQAHKVYMRMRDRGV 142
>gi|361069869|gb|AEW09246.1| Pinus taeda anonymous locus UMN_1072_01 genomic sequence
Length = 93
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y++ + KL AK FD +++IL ++ E I +I YG A + +HA++ F++M
Sbjct: 17 YNVAVKKLAFAKQFDAIEEILEHSLQVSKPCSEAFII-RIIKLYGLAGMPQHAIKTFNQM 75
Query: 114 PSFNVQRTVKSLNTLLNA 131
+ N+ T+KS N LLNA
Sbjct: 76 KNLNISPTIKSFNALLNA 93
>gi|125603901|gb|EAZ43226.1| hypothetical protein OsJ_27826 [Oryza sativa Japonica Group]
Length = 515
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE---EIIFCNVISFYGRARLLEHA 106
N ++ + +L A+ D +++IL Q K +P+ E +I YG+AR+ +HA
Sbjct: 182 NRFAFEDAVARLAGARRNDLVEEILEQHK----ALPQGRREGFVVRIIGLYGKARMPDHA 237
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKII 166
L F EM + RT KSLN + LL D + +LF S + LD + N +
Sbjct: 238 LSTFREMGLYGCPRTAKSLNATMKVLLRARLFDEVLQLFESSETYGVE-LDDISYNTVVK 296
Query: 167 M 167
M
Sbjct: 297 M 297
>gi|227463008|gb|ACP39956.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227463010|gb|ACP39957.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 337
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 5/137 (3%)
Query: 16 LHLQKHPKLALQLFK---NPNPNANDTEAPPLKP-FRYNLLHYDLIITKLGRAKMFDEMQ 71
L + + AL L K NP+ N A L P F + + + + I+KL F +
Sbjct: 32 LSAHQKTRAALCLLKSEQNPDRILNICRAASLTPTFHLDRIAFSVAISKLSEGNHFQSID 91
Query: 72 QILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA 131
L +L + E + ++I YG+A++L HAL FDE + R+ KSLN LL A
Sbjct: 92 TFLRELNSRPDLQHERFVSHSLI-LYGQAKMLNHALTTFDEFYNKGYCRSTKSLNALLVA 150
Query: 132 LLTCGKLDRMKELFISF 148
+ K +F+ F
Sbjct: 151 AILAKDYKEAKRIFVEF 167
>gi|157877498|ref|XP_001687066.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68130141|emb|CAJ09452.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 278
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 9/119 (7%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
R N+ HY ++T RA D + Q+K + +V P + +I+ A L+ AL
Sbjct: 47 RRNVFHYTTVLTACTRAGQMDAAMMVFRQMKAN-KVKPNVYTYTTLINGCANAEKLDLAL 105
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCGK-------LDRMKELFISFN-LKAIAVLDG 158
++F EM V VK++ L++ CG+ LD+ ++LFI+ N L A +DG
Sbjct: 106 RIFAEMRLVEVPPNVKTMTALISVCSRCGQWKKGFQVLDQCEDLFIAPNALTYTAAMDG 164
>gi|156070758|gb|ABU45173.1| unknown [Solanum melongena]
Length = 427
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 9/135 (6%)
Query: 11 RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEM 70
+ S L + P AL+++ + +D PL RY + I+ +L ++ F ++
Sbjct: 33 KAKSKLKAEHDPDKALEIY----SSVSDRYISPLSS-RYAQ---EYIVKRLAKSHRFSDI 84
Query: 71 QQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLN 130
+ L K+ + I +E ++I YG AR+ +HAL+++ +M R+ S N LL+
Sbjct: 85 ENFLESHKNSPK-ITQEPFLSSIIRSYGVARMFDHALKIYHQMDDLGTPRSAISFNVLLS 143
Query: 131 ALLTCGKLDRMKELF 145
A + DR+ +LF
Sbjct: 144 ACMHSKLYDRVAQLF 158
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/96 (19%), Positives = 50/96 (52%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+ + ++++++ +K++D + Q+ ++ +P+++ + +I Y L E A++
Sbjct: 134 SAISFNVLLSACMHSKLYDRVAQLFDEIPVKYGFLPDKVSYGVLIRSYCEMGLPEMAMER 193
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F EM V+ T + T+L++ GK D + ++
Sbjct: 194 FKEMEEKGVEITAVAFTTILHSFYKKGKSDEAERVW 229
>gi|297826581|ref|XP_002881173.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327012|gb|EFH57432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 917
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 16/115 (13%)
Query: 47 FRYNLLHYDLIITKLGR--------AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYG 98
R NL+ Y+ +I G+ AK FDEMQ+ Q P+ I F ++++
Sbjct: 299 LRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNCVQ--------PDRITFNSLLAVCS 350
Query: 99 RARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153
R L E A +FDEM + +++ V S NTLL+A+ G++D E+ K I
Sbjct: 351 RGGLWEAARNLFDEMSNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPAKRI 405
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARL 102
P K N++ Y +I +A FDE + ++++ + + + + ++S Y +
Sbjct: 401 PAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRY-LNIALDRVSYNTLLSIYTKVGR 459
Query: 103 LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
E AL + EM S +++ V + N LL GK D +K++F
Sbjct: 460 SEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVF 502
Score = 40.4 bits (93), Expect = 0.31, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
+ +++ Y+ ++ G+ +DE++++ ++K + V+P + + +I Y + L + A+
Sbjct: 476 KKDVVTYNALLGGYGKQGKYDEVKKVFAEMKRE-HVLPNLLTYSTLIDGYSKGGLYKEAM 534
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCG 136
+VF E S ++ V + L++AL G
Sbjct: 535 EVFREFKSAGLRADVVLYSALIDALCKNG 563
>gi|255541126|ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548807|gb|EEF50296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1163
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 12/133 (9%)
Query: 15 LLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 74
+L L K P ALQ F AP L F +N Y L++ LGRA+ + + L
Sbjct: 92 VLRLIKTPSKALQFF---------NWAPELG-FTHNDQSYFLMLEILGRARNLNVARNFL 141
Query: 75 HQLKH--DTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNAL 132
+K + V E+ F ++I YG+A L + ++QVF+ M S V +V + N+LL L
Sbjct: 142 FSIKRRSNGTVKLEDRFFNSLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLLLIL 201
Query: 133 LTCGKLDRMKELF 145
L G+ + + +F
Sbjct: 202 LKRGRTNMAQSVF 214
Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLL 103
LKP N + Y+ +I L + D+++QI IP+ +++ + A L
Sbjct: 330 LKP---NEITYNTLIKGLCEVQKIDKIKQIFEGALGGGGFIPDTCTLNTLMNAHCNAGNL 386
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNL 163
AL+VF++M NV+ + + L+ L G +R ++LF + K I + D C+ L
Sbjct: 387 NDALEVFEKMMVLNVRPDSATYSVLIRNLCQRGNFERAEQLFDELSEKEILLRDDGCTPL 446
Score = 42.4 bits (98), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQL-KHDTRVIPEEIIFCNVISFYGRARLLEHALQ 108
+L+ Y+ ++ L RA + +++ + K T + P+ + + ++ Y ++ AL
Sbjct: 261 DLVTYNTLVDGLCRAGKVNIAHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEALV 320
Query: 109 VFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
VF+EM S ++ + NTL+ L K+D++K++F
Sbjct: 321 VFEEMVSKGLKPNEITYNTLIKGLCEVQKIDKIKQIF 357
>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
Length = 932
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 57/109 (52%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
+ F++ L Y ++ KLG F+EM+ +L +++ + E ++ + FYGR ++
Sbjct: 113 QGFKHTLFTYKSMLQKLGFHGKFNEMENLLSEMRSNLDNTLLEGVYVEAMRFYGRKGKIQ 172
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153
A+ F+ M FN +V S N ++N L+ G ++ ++++ K +
Sbjct: 173 EAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKV 221
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 12/137 (8%)
Query: 37 NDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISF 96
N+ KP ++ Y+LII L + + ++ IP+ + ++
Sbjct: 494 NEMAEKGCKP---DIWTYNLIINGLCKMGCLSDANHLIGDAITKG-CIPDIFTYNTLVDG 549
Query: 97 YGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA-- 154
Y R L+ A+++ + M S + V + NTLLN L K + + E+F + K A
Sbjct: 550 YCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPN 609
Query: 155 ------VLDGLCSNLKI 165
+++ LC++ K+
Sbjct: 610 IITYNTIIESLCNSKKV 626
>gi|240255715|ref|NP_192049.4| uncharacterized protein [Arabidopsis thaliana]
gi|332656619|gb|AEE82019.1| uncharacterized protein [Arabidopsis thaliana]
Length = 1110
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 11/152 (7%)
Query: 3 KAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLG 62
K+ SP R+ L+ Q P LA ++F + N FR++ + ++I KLG
Sbjct: 45 KSPIGSPTRVQKLIASQSDPLLAKEIFDYASQQPN---------FRHSRSSHLILILKLG 95
Query: 63 RAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTV 122
R + F+ + +L + + + E IF +I Y A+L E L F +M FN
Sbjct: 96 RGRYFNLIDDVLAKHRSSGYPLTGE-IFTYLIKVYAEAKLPEKVLSTFYKMLEFNFTPQP 154
Query: 123 KSLNTLLNALLTC-GKLDRMKELFISFNLKAI 153
K LN +L+ L++ G L + ELF S L +
Sbjct: 155 KHLNRILDVLVSHRGYLQKAFELFKSSRLHGV 186
>gi|224118166|ref|XP_002317747.1| predicted protein [Populus trichocarpa]
gi|222858420|gb|EEE95967.1| predicted protein [Populus trichocarpa]
Length = 498
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 10/127 (7%)
Query: 9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFD 68
P RL S++ Q++ LA Q+F D F + Y II KL RA+ FD
Sbjct: 15 PKRLISMITHQENLDLAFQIF--------DYAGKYHPGFSHTYDTYHSIIDKLSRARAFD 66
Query: 69 EMQQILHQLKHDTRVIP-EEIIFCNVISFYGRARLLEHALQVFDEM-PSFNVQRTVKSLN 126
++ +L QL ++ I + +F +VI YG A AL+ F + F++Q +VK LN
Sbjct: 67 GVESLLSQLSRNSSHIKCGDDVFISVIRNYGLAGRPRLALKTFTRIKEEFSMQPSVKLLN 126
Query: 127 TLLNALL 133
TLLN +
Sbjct: 127 TLLNVFV 133
>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F++ Y ++I +LGR D +Q IL Q+K D E++ C +I+ Y R E A
Sbjct: 70 FQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFIC-IINGYKRVGSAEQA 128
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNL 163
L++F + F + TV+ N LL+ALL+ K + L+ N+K DGL N+
Sbjct: 129 LKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYT--NMKK----DGLIPNV 179
>gi|7267637|emb|CAB80949.1| hypothetical protein [Arabidopsis thaliana]
Length = 1117
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 11/152 (7%)
Query: 3 KAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLG 62
K+ SP R+ L+ Q P LA ++F + N FR++ + ++I KLG
Sbjct: 45 KSPIGSPTRVQKLIASQSDPLLAKEIFDYASQQPN---------FRHSRSSHLILILKLG 95
Query: 63 RAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTV 122
R + F+ + +L + + + E IF +I Y A+L E L F +M FN
Sbjct: 96 RGRYFNLIDDVLAKHRSSGYPLTGE-IFTYLIKVYAEAKLPEKVLSTFYKMLEFNFTPQP 154
Query: 123 KSLNTLLNALLTC-GKLDRMKELFISFNLKAI 153
K LN +L+ L++ G L + ELF S L +
Sbjct: 155 KHLNRILDVLVSHRGYLQKAFELFKSSRLHGV 186
>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F++ Y ++I +LGR D +Q IL Q+K D E++ C +I+ Y R E A
Sbjct: 70 FQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFIC-IINGYKRVGSAEQA 128
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNL 163
L++F + F + TV+ N LL+ALL+ K + L+ N+K DGL N+
Sbjct: 129 LKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYT--NMKK----DGLIPNV 179
>gi|238480176|ref|NP_001154199.1| uncharacterized protein [Arabidopsis thaliana]
gi|223635643|sp|Q8LDU5.2|PP298_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g01400, mitochondrial; Flags: Precursor
gi|332656621|gb|AEE82021.1| uncharacterized protein [Arabidopsis thaliana]
Length = 466
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 11/152 (7%)
Query: 3 KAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLG 62
K+ SP R+ L+ Q P LA ++F + N FR++ + ++I KLG
Sbjct: 45 KSPIGSPTRVQKLIASQSDPLLAKEIFDYASQQPN---------FRHSRSSHLILILKLG 95
Query: 63 RAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTV 122
R + F+ + +L + + + E IF +I Y A+L E L F +M FN
Sbjct: 96 RGRYFNLIDDVLAKHRSSGYPLTGE-IFTYLIKVYAEAKLPEKVLSTFYKMLEFNFTPQP 154
Query: 123 KSLNTLLNALLTC-GKLDRMKELFISFNLKAI 153
K LN +L+ L++ G L + ELF S L +
Sbjct: 155 KHLNRILDVLVSHRGYLQKAFELFKSSRLHGV 186
>gi|255561437|ref|XP_002521729.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539120|gb|EEF40716.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 629
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 10/134 (7%)
Query: 12 LASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQ 71
+A L+ Q ALQ FK A L F ++ Y +I KL FD +
Sbjct: 42 IAHLILDQNSATKALQTFK---------WASNLPKFTHSQSTYRALIQKLCAFHRFDTVY 92
Query: 72 QILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA 131
Q+L ++ H P+E IF VI GRAR++ H ++V D + F ++K N++L+
Sbjct: 93 QLLDEMPHAIGSPPDEEIFLTVIRGLGRARMIPHVIKVLDLISKFGKNPSLKIFNSILDV 152
Query: 132 LLTCGKLDRMKELF 145
L+ +D +E +
Sbjct: 153 LVKV-DIDVAREFY 165
>gi|115477108|ref|NP_001062150.1| Os08g0499800 [Oryza sativa Japonica Group]
gi|42407346|dbj|BAD08807.1| putative drought-inducible protein 1OS [Oryza sativa Japonica
Group]
gi|113624119|dbj|BAF24064.1| Os08g0499800 [Oryza sativa Japonica Group]
gi|125562056|gb|EAZ07504.1| hypothetical protein OsI_29761 [Oryza sativa Indica Group]
gi|215716978|dbj|BAG95341.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 443
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE---EIIFCNVISFYGRARLLEHA 106
N ++ + +L A+ D +++IL Q K +P+ E +I YG+AR+ +HA
Sbjct: 110 NRFAFEDAVARLAGARRNDLVEEILEQHK----ALPQGRREGFVVRIIGLYGKARMPDHA 165
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKII 166
L F EM + RT KSLN + LL D + +LF S + LD + N +
Sbjct: 166 LSTFREMGLYGCPRTAKSLNATMKVLLRARLFDEVLQLFESSETYGVE-LDDISYNTVVK 224
Query: 167 M 167
M
Sbjct: 225 M 225
>gi|449456671|ref|XP_004146072.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14580,
mitochondrial-like [Cucumis sativus]
gi|449503658|ref|XP_004162112.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14580,
mitochondrial-like [Cucumis sativus]
Length = 411
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR-ARLL 103
K ++ N Y L++++L ++FD++++++ ++K + + F +VI YG A L
Sbjct: 85 KDYKPNKEIYTLVVSRLAEGRLFDDIEKVMLRIKAERNFRLSDEFFYHVIKIYGNVAGRL 144
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNL 163
A+ +MP++N +VK+ N +LN L++ D + E+++ I + D C N+
Sbjct: 145 NKAIDTLFDMPNYNCWPSVKTFNFVLNLLVSAKMFDVVHEVYMGAPKLGIEI-DACCLNI 203
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 18/130 (13%)
Query: 28 LFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE 87
LF PN N P +K F + ++ L AKMFD ++H++ + E
Sbjct: 151 LFDMPNYNC----WPSVKTFNF-------VLNLLVSAKMFD----VVHEVYMGAPKLGIE 195
Query: 88 IIFCNV---ISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
I C + + ++ L+ AL+V DE P + V++ +TLL+ L G+L R EL
Sbjct: 196 IDACCLNILVKGLCQSGNLDAALKVLDEFPQQRCRPNVRTFSTLLHGLCENGELGRALEL 255
Query: 145 FISFNLKAIA 154
F + +
Sbjct: 256 FCKMENEGVC 265
>gi|15232008|ref|NP_187518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207466|sp|Q9SS81.1|PP221_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09060
gi|5923671|gb|AAD56322.1|AC009326_9 hypothetical protein [Arabidopsis thaliana]
gi|332641194|gb|AEE74715.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/151 (25%), Positives = 72/151 (47%), Gaps = 11/151 (7%)
Query: 5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRA 64
K SP + LL +K+P+ A LF + T P + ++ + Y I+ +L
Sbjct: 6 KSLSPKHVLKLLKSEKNPRAAFALFDSA------TRHPG---YAHSAVVYHHILRRLSET 56
Query: 65 KMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPS-FNVQRTVK 123
+M + + +I+ ++ E++ +VI YG+ + + AL VF M F + ++
Sbjct: 57 RMVNHVSRIVELIRSQECKCDEDVAL-SVIKTYGKNSMPDQALDVFKRMREIFGCEPAIR 115
Query: 124 SLNTLLNALLTCGKLDRMKELFISFNLKAIA 154
S NTLLNA + + +++ LF F +A
Sbjct: 116 SYNTLLNAFVEAKQWVKVESLFAYFETAGVA 146
>gi|3193306|gb|AAC19289.1| contains similarity to Arabidopsis membrane-associated
salt-inducible-like protein (GB:AL021637) [Arabidopsis
thaliana]
Length = 991
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 11/152 (7%)
Query: 3 KAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLG 62
K+ SP R+ L+ Q P LA ++F + N FR++ + ++I KLG
Sbjct: 45 KSPIGSPTRVQKLIASQSDPLLAKEIFDYASQQPN---------FRHSRSSHLILILKLG 95
Query: 63 RAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTV 122
R + F+ + +L + + + E IF +I Y A+L E L F +M FN
Sbjct: 96 RGRYFNLIDDVLAKHRSSGYPLTGE-IFTYLIKVYAEAKLPEKVLSTFYKMLEFNFTPQP 154
Query: 123 KSLNTLLNALLTC-GKLDRMKELFISFNLKAI 153
K LN +L+ L++ G L + ELF S L +
Sbjct: 155 KHLNRILDVLVSHRGYLQKAFELFKSSRLHGV 186
>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
Length = 654
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 2/132 (1%)
Query: 23 KLALQLFKNPNPNANDTEAP-PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT 81
K AL++FK + D +A P ++ Y+++I+ L F E +++ ++ H
Sbjct: 448 KDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRG 507
Query: 82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRM 141
++P+ I + +VI + L+ A Q+FD M S + V + TL+N G++D
Sbjct: 508 -IVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDG 566
Query: 142 KELFISFNLKAI 153
ELF + I
Sbjct: 567 LELFCEMGRRGI 578
Score = 39.3 bits (90), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ ++ +I RAK D+ ++LH++ + ++ I + +I + + L A +
Sbjct: 360 DIITFNTLIAGYCRAKRVDDGIKLLHEMT-EAGLVANTITYTTLIHGFCQVGDLNAAQDL 418
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
EM S V V + NTLL+ L GKL E+F
Sbjct: 419 LQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMF 454
>gi|222624963|gb|EEE59095.1| hypothetical protein OsJ_10946 [Oryza sativa Japonica Group]
Length = 318
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLL 103
L+ + + + Y I L + DE +QI +++ D + P E +C+++++Y +A
Sbjct: 128 LRGYNVDAVTYTTAIDGLCKMGCIDEARQIWNEMV-DKGMEPNEYAYCSLVAYYCKAGDF 186
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA--------V 155
E A +V+DEM ++ + S N L+ T G++D +F K I +
Sbjct: 187 EMARKVYDEMLGKGLKESTVSCNILVTGFCTHGRVDEALGMFEEMVKKGIEHDVITYNIL 246
Query: 156 LDGLC 160
+ GLC
Sbjct: 247 IQGLC 251
>gi|218192883|gb|EEC75310.1| hypothetical protein OsI_11678 [Oryza sativa Indica Group]
Length = 473
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLL 103
L+ + + + Y I L + DE +QI +++ D + P E +C+++++Y +A
Sbjct: 283 LRGYNVDAVTYTTAIDGLCKMGCIDEARQIWNEMV-DKGMEPNEYAYCSLVAYYCKAGDF 341
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA--------V 155
E A +V+DEM ++ + S N L+ T G++D +F K I +
Sbjct: 342 EMARKVYDEMLGKGLKESTVSCNILVTGFCTHGRVDEALGMFEEMVKKGIEHDVITYNIL 401
Query: 156 LDGLC 160
+ GLC
Sbjct: 402 IQGLC 406
>gi|376340268|gb|AFB34645.1| hypothetical protein UMN_1072_01, partial [Pinus cembra]
gi|376340270|gb|AFB34646.1| hypothetical protein UMN_1072_01, partial [Pinus cembra]
gi|376340272|gb|AFB34647.1| hypothetical protein UMN_1072_01, partial [Pinus cembra]
gi|376340274|gb|AFB34648.1| hypothetical protein UMN_1072_01, partial [Pinus cembra]
gi|376340276|gb|AFB34649.1| hypothetical protein UMN_1072_01, partial [Pinus cembra]
gi|376340278|gb|AFB34650.1| hypothetical protein UMN_1072_01, partial [Pinus cembra]
gi|376340280|gb|AFB34651.1| hypothetical protein UMN_1072_01, partial [Pinus cembra]
Length = 93
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y++ + KL AK FD +++IL ++ E I +I YG A + +HA++ F++M
Sbjct: 17 YNVAVKKLAFAKQFDAIEEILEHSLQVSKPCSEAFII-RIIKLYGLAGMPQHAIKTFNQM 75
Query: 114 PSFNVQRTVKSLNTLLNA 131
+ N+ ++KS N LLNA
Sbjct: 76 KNLNISPSIKSFNALLNA 93
>gi|356523400|ref|XP_003530328.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Glycine max]
Length = 664
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 46/134 (34%), Positives = 69/134 (51%), Gaps = 19/134 (14%)
Query: 9 PFRLASLLH-------LQKHPKL--ALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIIT 59
P ASLLH L++ P + ALQ F+ +T A F++ L Y ++I
Sbjct: 31 PPSSASLLHESHVAHALRREPNVLYALQHFQY----LTNTLA-----FKHTPLTYHVMIE 81
Query: 60 KLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQ 119
KLGR D + ILHQ+K + R+ + F V++ Y + L + AL++F + F +
Sbjct: 82 KLGRNSELDALHYILHQMKIE-RIPCSQDSFICVLNSYKNSGLGDRALKMFYRIKEFGCK 140
Query: 120 RTVKSLNTLLNALL 133
TVK N LL+ALL
Sbjct: 141 PTVKIYNHLLDALL 154
>gi|356542070|ref|XP_003539494.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Glycine max]
Length = 729
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLL 103
LKP N++ Y+ ++ L A D+M+ +L ++K D P+ F +I + A L
Sbjct: 322 LKP---NMITYNTLVKGLCEAHKLDKMKDVLERMKSDGGFSPDTFTFNTIIHLHCCAGNL 378
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ AL+VF+ M F + S +TL+ +L G D ++LF
Sbjct: 379 DEALKVFESMKKFRIPADSASYSTLIRSLCQKGDYDMAEQLF 420
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 73/146 (50%), Gaps = 4/146 (2%)
Query: 4 AKPTSPFRLASLL-HLQKHPKL-ALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKL 61
+KP S L+SLL + K L L+L K+P+ + K F + Y +++ L
Sbjct: 61 SKPFSNGLLSSLLITISKTTVLRTLRLIKDPSKALRFFKWTQQKGFSHTPESYFIMLEIL 120
Query: 62 GRAKMFDEMQQILHQL-KHDTRVIP-EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQ 119
GR + + + L + KH + E+ F ++I Y A L + ++++F M S V
Sbjct: 121 GRERNLNVARNFLFSIEKHSKGTVKLEDRFFNSLIRSYAEAGLFKESMKLFQTMKSIAVS 180
Query: 120 RTVKSLNTLLNALLTCGKLDRMKELF 145
+V + N+L++ LL G+ + KE++
Sbjct: 181 PSVVTFNSLMSILLKRGRTNMAKEVY 206
Score = 36.6 bits (83), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVI-PEEIIFCNVISFYGRARLLEHALQ 108
+++ Y+ ++ L RA + +++ + + P + + +I Y + +E AL
Sbjct: 253 DVVTYNTLVDGLCRAGKVRIARNLVNGMGKKCEGLNPNVVTYTTLIRGYCMKQEVEEALV 312
Query: 109 VFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
V +EM S ++ + + NTL+ L KLD+MK++
Sbjct: 313 VLEEMTSRGLKPNMITYNTLVKGLCEAHKLDKMKDV 348
>gi|224142259|ref|XP_002324476.1| predicted protein [Populus trichocarpa]
gi|222865910|gb|EEF03041.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 71/141 (50%), Gaps = 19/141 (13%)
Query: 12 LASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQ 71
L + + L+ P + L+LF A FR++ Y + I KLG AKM+ EM
Sbjct: 129 LCNNITLEDDPLVCLELF---------NWASQQHRFRHDASTYHVTIKKLGIAKMYQEMD 179
Query: 72 QILHQL---KHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPS---FNVQRTVKSL 125
+++QL H I E ++ ++I ++ AR L A+ +F M S + + ++K+
Sbjct: 180 DVVNQLLAVPH----IGNEALYNSIIYYFTEARKLTRAVNIFKRMKSSRNLDCRPSIKTY 235
Query: 126 NTLLNALLTCGKLDRMKELFI 146
N LL A+L+ G+ + +++
Sbjct: 236 NILLTAMLSRGRNSYINHMYM 256
>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
Length = 683
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 2/134 (1%)
Query: 23 KLALQLFKNPNPNANDTEAP-PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT 81
K AL++FK + D +A P ++L Y+++I L F E +++ ++ H
Sbjct: 480 KDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPH-R 538
Query: 82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRM 141
++P+ I + ++I + L+ A Q+F M S + V + NTL+N G++D
Sbjct: 539 GIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDG 598
Query: 142 KELFISFNLKAIAV 155
ELF + I
Sbjct: 599 LELFCEMGRRGIVA 612
>gi|449479644|ref|XP_004155662.1| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
mitochondrial-like [Cucumis sativus]
Length = 411
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 65 KMFDEMQQILH-QLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVK 123
K F ++ I+ Q K++ I EE +I YG+A + HA ++FDE+P N +RTVK
Sbjct: 87 KKFSMIEDIIEAQKKYEE--IKEEGFAIRLIKLYGKAGMFSHARKLFDELPELNCERTVK 144
Query: 124 SLNTLLNALLTCGKLDRMKELF 145
S N LL + + ++++ +F
Sbjct: 145 SFNALLTSCANSKEFEQLETMF 166
>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
Length = 650
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 17/161 (10%)
Query: 5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRA 64
K SP R+ LL +K+P AL +F + T P Y H I+ +L
Sbjct: 6 KSLSPKRVIKLLKSEKNPHSALSIFDSV------TRFPGYSHTPYVFHH---ILKRLFDP 56
Query: 65 KMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPS-FNVQRTVK 123
K+ + +I+ ++ PE++ VI Y + + + AL +F M F Q ++
Sbjct: 57 KLVAHVSRIVELIRTQKCKCPEDVAL-TVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIR 115
Query: 124 SLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLK 164
S N+LLNAL+ K D + F+ F GL NL+
Sbjct: 116 SYNSLLNALIESNKWDEAESFFLYFETM------GLSPNLQ 150
Score = 40.4 bits (93), Expect = 0.28, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 19/137 (13%)
Query: 40 EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR 99
+ P + P N+ Y+++I L + FDE +I H++K + R + + +I
Sbjct: 247 KGPSVYP---NIPSYNVMINGLCKCGKFDESFEIWHRMKKNERG-QDLYTYSTLIHGLCG 302
Query: 100 ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF-----------ISF 148
+ L+ A +V+ EM V V NT+LN L G+++ EL+ +S+
Sbjct: 303 SGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSY 362
Query: 149 NLKAIAVLDGLCSNLKI 165
N+ ++ GL N K+
Sbjct: 363 NI----LIRGLFENAKV 375
Score = 39.3 bits (90), Expect = 0.67, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
NL Y+++I R K FD+ +++L+ + + P+ + +I+ + + AL++
Sbjct: 148 NLQTYNILIKISCRKKQFDKAKELLNWM-WEQGFSPDVFSYGTLINSLAKNGYMSDALKL 206
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
FDEMP V V N L++ G + E++
Sbjct: 207 FDEMPERGVTPDVACYNILIDGFFKKGDILNASEIW 242
>gi|224130680|ref|XP_002320901.1| predicted protein [Populus trichocarpa]
gi|222861674|gb|EEE99216.1| predicted protein [Populus trichocarpa]
Length = 475
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 12/134 (8%)
Query: 2 NKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKL 61
K+ SP R+ L+ Q P LA ++F + N F+++ Y ++I KL
Sbjct: 60 TKSPIGSPSRVQKLIASQSDPLLAKEIFDYASRQPN---------FQHSYSSYLILILKL 110
Query: 62 GRAKMFDEMQQILHQLKHDTR-VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR 120
GRAK F + +L LK V P +F +I+ YG A L + AL++F + F+
Sbjct: 111 GRAKYFSFIDDLLTDLKSKNYPVTP--TLFSYIINIYGEANLPDKALKIFYTILKFDCNP 168
Query: 121 TVKSLNTLLNALLT 134
+ K LN +L L++
Sbjct: 169 SPKHLNGILEILVS 182
>gi|357440039|ref|XP_003590297.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479345|gb|AES60548.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 661
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 71/132 (53%), Gaps = 11/132 (8%)
Query: 15 LLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 74
L + K AL +F+ ++N F+++ YD+++ LGR K D+M++IL
Sbjct: 93 LFRYKDDWKSALAIFRWAGSHSN---------FKHSQQSYDMMVDILGRMKAMDKMREIL 143
Query: 75 HQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLT 134
+++ ++ + I V+ + AR + A+++FD++ +++ +S+N LL+ L
Sbjct: 144 EEMRQESLITLNTI--AKVMRRFVGARQWKDAVRIFDDLQFLGLEKNTESMNVLLDTLCK 201
Query: 135 CGKLDRMKELFI 146
+++ +E+++
Sbjct: 202 EKFVEQAREIYL 213
>gi|116793367|gb|ABK26722.1| unknown [Picea sitchensis]
Length = 198
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 67/133 (50%), Gaps = 7/133 (5%)
Query: 18 LQKHPKLA---LQLFKNPNPNAND--TEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQ 72
++ PKL L F+N A A + + +++ Y +II LG+ + + M
Sbjct: 61 VEASPKLVEEVLMRFENAGMQAYRFFEWAGKQQDYAHSVEAYHIIIDSLGKIQQYGLMWT 120
Query: 73 ILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNAL 132
+++ +K + E F ++ Y RA+ +E A+ FD M F V +++ N+LL+AL
Sbjct: 121 VVNLMKIKGVLTKE--TFAIIMRRYARAKKIEEAVYTFDTMEKFGVLPDLEAFNSLLSAL 178
Query: 133 LTCGKLDRMKELF 145
C K+ + +E+F
Sbjct: 179 CKCKKVRKAQEVF 191
>gi|376340258|gb|AFB34640.1| hypothetical protein UMN_1072_01, partial [Abies alba]
Length = 93
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y++ + KL AK F+ +++IL+ + E I +I YG A + +HA++ F++M
Sbjct: 17 YEVTVKKLAFAKEFNAIEEILNHSLQVSEPCSEGFI-NRIIMLYGVAGMPQHAIRTFNQM 75
Query: 114 PSFNVQRTVKSLNTLLNA 131
S N+ TVKS N LLNA
Sbjct: 76 KSLNISPTVKSFNALLNA 93
>gi|294461967|gb|ADE76539.1| unknown [Picea sitchensis]
Length = 486
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 14/146 (9%)
Query: 2 NKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKP-FRYNLLHYDLIITK 60
N ++ +P R+ L+ Q LA+++F E +P F+++ Y +I K
Sbjct: 93 NHSRMLTPARVHKLIASQTDALLAMEIF----------EVASRQPGFKHSYSTYHTLICK 142
Query: 61 LGRAKMFDEMQQILHQLKHD-TRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQ 119
LGRA+ F M+ ++ Q++ D P +F ++I YG + A++ F +M F +
Sbjct: 143 LGRARQFKTMEGLIQQMRKDGCPYTPG--LFVDIIEIYGEVGMPNEAIKAFHQMLEFGYE 200
Query: 120 RTVKSLNTLLNALLTCGKLDRMKELF 145
K N LL L+ L+ LF
Sbjct: 201 PLAKHFNVLLIVLIEHKCLETALSLF 226
>gi|225424178|ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
mitochondrial [Vitis vinifera]
Length = 531
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 41 APPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRA 100
A K F+Y+ +Y+ +I LG+ K F + +++ ++ + E F + Y RA
Sbjct: 135 AEKQKGFKYSTENYNALIEALGKIKQFKMIWNLVNDMRSKGLLTQE--TFALISRRYARA 192
Query: 101 RLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
R ++ A++ F++M F +Q + N LL+AL ++R +E+F
Sbjct: 193 RKVKEAVETFEKMEKFGLQPVLSDFNRLLDALCKSRHVERAQEVF 237
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 44/92 (47%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
YD+I+ L +A+ E ++ + + P + V+ + ++ AL+V+DEM
Sbjct: 392 YDIILHHLIKARRTKEAYRVFQGMSSEPGCEPSVSTYEIVVRMFCNEERVDMALRVWDEM 451
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ V + +TL+N+L KLD + F
Sbjct: 452 KAKGVLPGMHMFSTLINSLCYENKLDEACKYF 483
>gi|297833654|ref|XP_002884709.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330549|gb|EFH60968.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 689
Score = 53.5 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 11/151 (7%)
Query: 5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRA 64
K SP + LL +K+P+ A LF + T P + ++ + Y I+ +L A
Sbjct: 6 KSLSPKHVLKLLKSEKNPRAAFALFDSA------TRHPG---YAHSAVVYHHILRRLSEA 56
Query: 65 KMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPS-FNVQRTVK 123
+M + +I+ ++ E++ +VI YG+ + + AL VF M F + ++
Sbjct: 57 RMVTHVGRIVELIRSQECKCDEDVAL-SVIKTYGKNSMPDRALDVFKRMREIFGCEPGIR 115
Query: 124 SLNTLLNALLTCGKLDRMKELFISFNLKAIA 154
S NTLLNA + + +++ LF F +A
Sbjct: 116 SYNTLLNAFVEAKQWVKVESLFAYFETAGVA 146
>gi|357512639|ref|XP_003626608.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240852|gb|ABD32710.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355501623|gb|AES82826.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 451
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 11/128 (8%)
Query: 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKP-FRYNLLHYDLIITKLGRAKM 66
SP R+ L+ Q P LA ++F + L+P FR+N Y ++I K GR+K
Sbjct: 41 SPTRVQKLIASQSDPLLAKEIF----------DYASLQPNFRHNYSTYLILILKFGRSKH 90
Query: 67 FDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLN 126
F + +L +LK ++ +F +I YG A L + AL F M FN++ K LN
Sbjct: 91 FSLLDDLLRRLKSESSQPITPTLFSYLIKIYGEANLPDKALNTFYIMLQFNIKPLTKHLN 150
Query: 127 TLLNALLT 134
+L+ L++
Sbjct: 151 RILDILVS 158
>gi|224114227|ref|XP_002316702.1| predicted protein [Populus trichocarpa]
gi|222859767|gb|EEE97314.1| predicted protein [Populus trichocarpa]
Length = 396
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
+ FR Y I +L A+ F+ +++IL K I +E +IS YG A + +
Sbjct: 53 EDFRTKTFVYKNSIHRLAAARKFNYVEEILEDQKQ-YEDIYKEGFNARLISLYGVAGMFD 111
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+A +VFDEM RTV S N LL A + K D + LF
Sbjct: 112 NARKVFDEMFERKCARTVVSFNALLGACVNSKKFDEAEGLF 152
>gi|15221411|ref|NP_177623.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
gi|75194055|sp|Q9S7Q2.1|PP124_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g74850, chloroplastic; AltName: Full=Protein PLASTID
TRANSCRIPTIONALLY ACTIVE 2; Flags: Precursor
gi|5882738|gb|AAD55291.1|AC008263_22 Contains 3 PF|01535 DUF17 domains [Arabidopsis thaliana]
gi|12323908|gb|AAG51934.1|AC013258_28 hypothetical protein; 81052-84129 [Arabidopsis thaliana]
gi|332197518|gb|AEE35639.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
Length = 862
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 37/89 (41%), Positives = 47/89 (52%), Gaps = 10/89 (11%)
Query: 69 EMQQILHQLKHDTRVI---PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSL 125
+ Q+ L K+ R I P E I+ +IS GR LL+ L+VFDEMPS V R+V S
Sbjct: 120 DWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSY 179
Query: 126 NTLLNALLTCGK-------LDRMKELFIS 147
L+NA G+ LDRMK IS
Sbjct: 180 TALINAYGRNGRYETSLELLDRMKNEKIS 208
>gi|357448559|ref|XP_003594555.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483603|gb|AES64806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 7/96 (7%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNV-ISFYGRARLLEHALQVFDE 112
Y+ + T LGR K + + ++K D P +I N+ IS YGRA ++ A+++F+E
Sbjct: 433 YNTVFTALGRLKQVSHIHDLYEKMKQDGP--PPDIFTYNILISSYGRAGRVDSAVKIFEE 490
Query: 113 MPSFNVQRTVKSLNTLLNALLTCGKLD----RMKEL 144
+ + N Q V S N+L+N L G +D R KE+
Sbjct: 491 LENSNCQPDVISYNSLINCLGKNGDVDEAHMRFKEM 526
>gi|383137237|gb|AFG49716.1| Pinus taeda anonymous locus UMN_1072_01 genomic sequence
Length = 93
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVI-PEEIIFCN-VISFYGRARLLEHALQVFD 111
Y++ + KL AK FD +++IL +H +V P F N +I YG A + +HA++ F
Sbjct: 17 YEVTVKKLAFAKEFDAIEEIL---EHSLQVSKPSSEAFINRIIMLYGLAGMPQHAIKTFH 73
Query: 112 EMPSFNVQRTVKSLNTLLNA 131
M + N+ T+KS N LLNA
Sbjct: 74 RMKNLNISPTIKSFNALLNA 93
>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Brachypodium distachyon]
Length = 628
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 10/122 (8%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
R ++ Y +I LG+A FDE H+++ + P+ ++ N+I+F G+A L+ A+
Sbjct: 293 RPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREG-CRPDTVVINNMINFLGKAGRLDDAV 351
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCGK--------LDRMKELFISFNLKAIAVL-DG 158
++F+EM + +V + NT++ AL +RMK IS + ++L DG
Sbjct: 352 KLFEEMGTLQCIPSVVTYNTIIKALFESKSRISEISSWFERMKGSGISPSPFTYSILIDG 411
Query: 159 LC 160
C
Sbjct: 412 FC 413
Score = 42.0 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I LG+AK +D ++ +LK + + + +I G+A L+ A+ +FDEM
Sbjct: 440 YCSLIDALGKAKRYDIAHELFQELKENCGSSSARV-YAVMIKHLGKAGRLDDAVNLFDEM 498
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLD-------RMKE 143
V + N L++ L G LD RM+E
Sbjct: 499 NKLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQE 535
>gi|18407365|ref|NP_564786.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806489|sp|Q8LE47.2|PPR87_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g61870, mitochondrial; AltName: Full=Protein
PENTATRICOPEPTIDE REPEAT 336; Flags: Precursor
gi|16226403|gb|AAL16159.1|AF428391_1 At1g61870/F8K4_8 [Arabidopsis thaliana]
gi|3367521|gb|AAC28506.1| Similar to gb|U08285 membrane-associated salt-inducible protein
from Nicotiana tabacum. ESTs gb|T44131 and gb|T04378
come from this gene [Arabidopsis thaliana]
gi|17065564|gb|AAL32936.1| Unknown protein [Arabidopsis thaliana]
gi|32815835|gb|AAP88326.1| At1g61870 [Arabidopsis thaliana]
gi|332195777|gb|AEE33898.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 408
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 4/135 (2%)
Query: 16 LHLQKHPKLALQLFK---NPNPNANDTEAPPLKP-FRYNLLHYDLIITKLGRAKMFDEMQ 71
L ++ K AL L K +P+ A L P R + + + + L K F +
Sbjct: 41 LTSKEKSKAALSLLKSEKDPDRILEICRAASLTPDCRIDRIAFSAAVENLAEKKHFSAVS 100
Query: 72 QILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA 131
+L + + E + I Y +A +L+H+L+VF ++ F + RTVKSLN LL A
Sbjct: 101 NLLDGFIENRPDLKSERFAAHAIVLYAQANMLDHSLRVFRDLEKFEISRTVKSLNALLFA 160
Query: 132 LLTCGKLDRMKELFI 146
L K ++I
Sbjct: 161 CLVAKDYKEAKRVYI 175
>gi|302769928|ref|XP_002968383.1| hypothetical protein SELMODRAFT_169661 [Selaginella moellendorffii]
gi|300164027|gb|EFJ30637.1| hypothetical protein SELMODRAFT_169661 [Selaginella moellendorffii]
Length = 532
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 11/128 (8%)
Query: 18 LQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQL 77
L K+P LAL+L+ E K + N+L Y +I G AKM D + Q+ +
Sbjct: 292 LSKNPVLALRLY----------EELKAKEIKLNVLSYGTLIQIFGEAKMLDRVFQMKRDM 341
Query: 78 KHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGK 137
T ++P + + +++ + L+E LQV+ +M + N LL+A + G+
Sbjct: 342 D-STGIVPNVVTWTSLVGACSKGALVEKTLQVYQDMVQAGCTPNAFTYNFLLSACVDGGQ 400
Query: 138 LDRMKELF 145
D+ +LF
Sbjct: 401 SDKAHKLF 408
>gi|414880311|tpg|DAA57442.1| TPA: hypothetical protein ZEAMMB73_673693 [Zea mays]
Length = 770
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 59/109 (54%), Gaps = 1/109 (0%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
R +++ + ++I L R + F E+ +L +++ + P E+I+ +I ++ R A
Sbjct: 282 LRPSIVTFGILINGLARGQRFGEVDAVLQEME-GFGITPNEVIYNQLIGWHCREGHCSEA 340
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAV 155
L++FDEM S +++TV + N + AL G+++ +++ L + V
Sbjct: 341 LRLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEQILDEMLLAGMTV 389
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 14/131 (10%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQL-KHDTRVIPEEIIFCNVISFYGRARL 102
LKP +++ Y II +AK + + L +L K+ R P +I+ +I YGR
Sbjct: 563 LKP---DIVTYGTIIDGYCKAKDVHKANKYLIELIKNGLR--PNAVIYNALIGGYGRNGS 617
Query: 103 LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA-------- 154
+ A+ V D M +Q T + N+L+ + G ++ KE+F LK I
Sbjct: 618 ISDAIGVLDTMKHNGIQPTPITYNSLMYWMCHAGLVEEAKEIFAQCILKNIELGVIGYTI 677
Query: 155 VLDGLCSNLKI 165
++ G C KI
Sbjct: 678 IIQGFCKIGKI 688
Score = 38.5 bits (88), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 15/145 (10%)
Query: 2 NKAKPTSPFRLASLLHLQKHPKL---ALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLII 58
N +PT P SL++ H L A ++F LK ++ Y +II
Sbjct: 631 NGIQPT-PITYNSLMYWMCHAGLVEEAKEIFAQC----------ILKNIELGVIGYTIII 679
Query: 59 TKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNV 118
+ DE ++ H + P ++ + ++ Y + E A ++FDEM S +
Sbjct: 680 QGFCKIGKIDEAVMYFKEM-HYRDIRPNKMTYTTLMYAYCKCGNKEEAFKLFDEMVSSGI 738
Query: 119 QRTVKSLNTLLNALLTCGKLDRMKE 143
S NTL++ LD++ E
Sbjct: 739 VPDTVSYNTLISGCCEVDSLDKIVE 763
>gi|225439604|ref|XP_002265961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g38420,
mitochondrial-like [Vitis vinifera]
Length = 505
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I+ L R + F + +LH+L+ + E IF N+I YG A + E A+ +F +
Sbjct: 80 YRFVISTLTRCRQFHHLPPLLHRLEKVEKFETPEFIFTNLIKVYGNANMFEDAVDLFFRI 139
Query: 114 PSFNVQRTVKSLNTLLNAL 132
P+F +V SLN LL L
Sbjct: 140 PNFRCVPSVYSLNALLYVL 158
>gi|297842227|ref|XP_002888995.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
lyrata]
gi|297334836|gb|EFH65254.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
lyrata]
Length = 863
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 37/89 (41%), Positives = 47/89 (52%), Gaps = 10/89 (11%)
Query: 69 EMQQILHQLKHDTRVI---PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSL 125
+ Q+ L K+ R I P E I+ +IS GR LL+ L+VFDEMPS V R+V S
Sbjct: 120 DWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSY 179
Query: 126 NTLLNALLTCGK-------LDRMKELFIS 147
L+NA G+ LDRMK IS
Sbjct: 180 TALINAYGRNGRYETSLELLDRMKNDKIS 208
>gi|224076660|ref|XP_002304977.1| predicted protein [Populus trichocarpa]
gi|222847941|gb|EEE85488.1| predicted protein [Populus trichocarpa]
Length = 381
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
FR Y I +L AK F +++IL K + + +E +IS YG + + ++A
Sbjct: 55 FRTKSAIYKDTIRRLAAAKKFRYVEEILENQKQ-YQDMSKEGFNARLISLYGSSGMFDNA 113
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+VFDEM RTV S N LL A + K D + LF
Sbjct: 114 RKVFDEMLERKCARTVLSFNALLGACVNSKKFDEVGGLF 152
Score = 39.3 bits (90), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVF 110
+L ++ ++ +K FDE+ + L + + P+ + + V+ + L+ A+ +
Sbjct: 129 VLSFNALLGACVNSKKFDEVGGLFRGLSEELEIEPDLVSYNTVMKAFCEMGSLDSAVSLL 188
Query: 111 DEMPSFNVQRTVKSLNTLLNALLTCGKLD-------RMKE 143
DE+ ++ + + NTLLN L G+ D RMKE
Sbjct: 189 DEIEKKGLKPDLITFNTLLNGLYANGRFDAGERIWQRMKE 228
>gi|357504477|ref|XP_003622527.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355497542|gb|AES78745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 721
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLL 103
LKP N++ Y+ +I L A+ +D+M++IL Q+K D IP+ F +I+ + A L
Sbjct: 329 LKP---NIVTYNTLIKGLCEAQKWDKMKEILEQMKGDGGSIPDACTFNTLINSHCCAGNL 385
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ A +VF+ M V S + L+ L G + + LF
Sbjct: 386 DEAFKVFENMKKLEVSADSASYSVLIRTLCQKGDYGKAEMLF 427
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR-VIPEEIIFCNVISFYGRARLLEHALQ 108
+++ Y+ ++ L RA +++ + + + P+ + + +I Y R + ++ AL
Sbjct: 260 DVVTYNTLVDGLCRAGKIKVAHNLVNGMSKKCKDLSPDVVTYTTLIRGYCRKQEVDEALD 319
Query: 109 VFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
+ +EM ++ + + NTL+ L K D+MKE+
Sbjct: 320 ILEEMNGRGLKPNIVTYNTLIKGLCEAQKWDKMKEI 355
>gi|224053663|ref|XP_002297917.1| predicted protein [Populus trichocarpa]
gi|222845175|gb|EEE82722.1| predicted protein [Populus trichocarpa]
Length = 670
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 5/118 (4%)
Query: 32 PNPNANDT---EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEI 88
P+P +D P + +R + +I F ++++L ++K + RVI E+
Sbjct: 68 PDPPISDKIFKSGPKMGSYRLGDSTFYSLINNYANLGDFKSLEKVLDRMKCEKRVIFEKC 127
Query: 89 IFCNVISFYGRARLLEHALQVFDEMPS-FNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F + YG+A L E A+ +FD M F +RT KS N++LN ++ G R E +
Sbjct: 128 -FIVIFKAYGKAHLPEKAVDLFDRMACEFECKRTGKSFNSVLNVIIQEGLFHRALEFY 184
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N+L ++L+I + + + D+ Q+ + + P+ +C ++ +A ++ A+ +
Sbjct: 198 NVLTFNLVIKAMCKVGLVDDAIQVFRDMTI-RKCEPDVYTYCTLMDGLCKADRIDEAVSL 256
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLC 160
DEM + + N L+N L G L R +L + LK ++ GLC
Sbjct: 257 LDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLC 315
>gi|86438766|emb|CAJ75625.1| pentatricopeptide repeat-containing protein [Brachypodium
sylvaticum]
Length = 289
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 9/131 (6%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE---EIIFCNVISFYGRARLLEHA 106
N + + +L A+ D +++IL Q K +P+ E +I YG+AR+ EHA
Sbjct: 113 NRFAFQDAVARLSGARRNDLVEEILEQHK----ALPQGRREGFVVRIIGLYGKARMPEHA 168
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSN--LK 164
L+ F EM + T KS N L L+ D+ +LF K LD + N +K
Sbjct: 169 LRTFQEMEMYGCTCTNKSFNATLKVLMQAQLFDKALQLFEEGPGKYGVELDDISYNTVVK 228
Query: 165 IIMNDSQVRVT 175
++ + Q+R
Sbjct: 229 MMCDMGQLRAA 239
>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
sativus]
Length = 681
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 65/134 (48%), Gaps = 2/134 (1%)
Query: 23 KLALQLFKNPNPNANDTEAP-PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT 81
K AL++FK + D +A P ++ Y+++I+ L F E +++ ++ H
Sbjct: 476 KDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPH-R 534
Query: 82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRM 141
++P I + ++I+ + L+ A Q+FD M S + V + NTL++ G++D
Sbjct: 535 GIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDG 594
Query: 142 KELFISFNLKAIAV 155
ELF + I
Sbjct: 595 LELFCEMGRRGIVA 608
>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
[Vitis vinifera]
Length = 691
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 11/151 (7%)
Query: 5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRA 64
K SP R+ LL +K+P AL +F + T P Y H I+ +L
Sbjct: 6 KSLSPKRVIKLLKSEKNPHSALSIFDSV------TRFPGYSHTPYVFHH---ILKRLFDP 56
Query: 65 KMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPS-FNVQRTVK 123
K+ + +I+ ++ PE++ VI Y + + + AL +F M F Q ++
Sbjct: 57 KLVAHVSRIVELIRTQKCKCPEDVAL-TVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIR 115
Query: 124 SLNTLLNALLTCGKLDRMKELFISFNLKAIA 154
S N+LLNAL+ K D + F+ F ++
Sbjct: 116 SYNSLLNALIESNKWDEAESFFLYFETMGLS 146
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 40 EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR 99
+ P + P N+ Y+++I L + FDE +I H++K + R + + +I
Sbjct: 247 KGPSVYP---NIPSYNVMINGLCKCGKFDESFEIWHRMKKNERG-QDLYTYSTLIHGLCG 302
Query: 100 ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ L+ A +V+ EM V V NT+LN L G+++ EL+
Sbjct: 303 SGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELW 348
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
NL Y+++I R K FD+ +++L+ + + P+ + +I+ + + AL++
Sbjct: 148 NLQTYNILIKISCRKKQFDKAKELLNWM-WEQGFSPDVFSYGTLINSLAKNGYMSDALKL 206
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
FDEMP V V N L++ G + E++
Sbjct: 207 FDEMPERGVTPDVACYNILIDGFFKKGDILNASEIW 242
>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
Length = 700
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 84/161 (52%), Gaps = 15/161 (9%)
Query: 4 AKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGR 63
A+ +P + +L+LQ + AL+ F+ A + + +N Y +I LGR
Sbjct: 178 AQDLNPDAVVKVLNLQTDAQNALRFFQ---------WADKQEGYDHNTDAYFTMIDILGR 228
Query: 64 AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVK 123
AKMF E+Q +L +++ R I ++ V+S YGR+ + +L+ F+ M + +
Sbjct: 229 AKMFTELQSLLQKMQTQGREITRSMLHSFVMS-YGRSGRFKESLEAFNLMKEMGYEPGL- 286
Query: 124 SLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGL-CSNL 163
++T N++L L + K+L ++ NL A + +G+ C+NL
Sbjct: 287 -IDTAYNSVLV--SLVKNKKLDMAENLFAQMINNGVSCNNL 324
>gi|449494995|ref|XP_004159705.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
mitochondrial-like [Cucumis sativus]
Length = 488
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 71/125 (56%), Gaps = 4/125 (3%)
Query: 26 LQLFKNPNPNANDT--EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRV 83
LQ FK+ +A A L F++ YD++I LG+ K +M+ +L ++K + R+
Sbjct: 80 LQRFKDDWKSALGVFRWAESLSGFKHTPDLYDILIDTLGKTKQLVKMRGMLEEMK-EARL 138
Query: 84 IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKE 143
+ + + + F G + E+A+++FD++ ++ +++ +S+N LL+ L K+++ ++
Sbjct: 139 VTLDTVAKAMRRFAGAGQW-ENAVRIFDDLETYGLEKNTESMNVLLDTLCKEKKVEKARQ 197
Query: 144 LFISF 148
+++
Sbjct: 198 MYLEL 202
>gi|297832366|ref|XP_002884065.1| hypothetical protein ARALYDRAFT_343373 [Arabidopsis lyrata subsp.
lyrata]
gi|297329905|gb|EFH60324.1| hypothetical protein ARALYDRAFT_343373 [Arabidopsis lyrata subsp.
lyrata]
Length = 1056
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 10/127 (7%)
Query: 19 QKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLK 78
QK AL+ F+ A F ++ Y + KL + FD + Q+L ++
Sbjct: 41 QKSASGALETFR---------WASTFPGFIHSRSTYRALFYKLCVFRRFDTVYQLLDEMP 91
Query: 79 HDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKL 138
T + P++ IF +I +GRARL + + V D + F ++ ++K N++L+ L+ +
Sbjct: 92 ESTGLPPDDAIFVTIIRGFGRARLTKRVISVVDLVSKFGIKPSLKVFNSILDVLVK-EDI 150
Query: 139 DRMKELF 145
D +E F
Sbjct: 151 DIAREFF 157
>gi|302765062|ref|XP_002965952.1| hypothetical protein SELMODRAFT_84012 [Selaginella moellendorffii]
gi|300166766|gb|EFJ33372.1| hypothetical protein SELMODRAFT_84012 [Selaginella moellendorffii]
Length = 533
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 12/129 (9%)
Query: 18 LQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHY-DLIITKLGRAKMFDEMQQILHQ 76
L K+P LAL+L+ E K + N+L Y LI G AKM D + Q+ H
Sbjct: 292 LSKNPVLALRLY----------EELKAKEIKMNVLSYGTLIQVIFGEAKMLDRVFQMKHD 341
Query: 77 LKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCG 136
+ T ++P + + +++ + L+E LQV+ +M + N LL+A + G
Sbjct: 342 MD-STGIVPNVVTWTSLVGACSKGALVEKTLQVYQDMVQAGCTPNAFTYNFLLSACVDGG 400
Query: 137 KLDRMKELF 145
+ D+ +LF
Sbjct: 401 QSDKAHKLF 409
>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
Length = 688
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 2/132 (1%)
Query: 23 KLALQLFKNPNPNANDTEAP-PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT 81
K AL++FK + D +A P ++L Y+++I L F E +++ ++ H
Sbjct: 482 KDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRG 541
Query: 82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRM 141
++P+ I + ++I + L+ A Q+F M S + V + NTL+N G++D
Sbjct: 542 -IVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDG 600
Query: 142 KELFISFNLKAI 153
ELF + I
Sbjct: 601 LELFCEMGRRGI 612
>gi|255553476|ref|XP_002517779.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543051|gb|EEF44586.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 486
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
++ Y++II GRA + M + +KH + P I +C+++S Y +A LL +
Sbjct: 339 TVVTYNIIIETFGRAGDIENMDEYFKTMKH-LGMKPNAITYCSLVSAYSKAGLLMKVNSI 397
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFI 146
++ + +V N ++NA G +D+M ELF+
Sbjct: 398 LRQVENSDVVLDTTFFNCIINAYGQAGDVDKMAELFL 434
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 44/91 (48%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
++ II G+AKMF EM+ L + +P+ F +VI YG + +E + ++E
Sbjct: 237 FNTIINGYGKAKMFREMENSLTNMIEIGNSVPDLFTFNSVIGAYGNSGRIEKMEKWYNEF 296
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
+ +K+ N L+ + G +++ +
Sbjct: 297 QLMGISPDIKTFNILIKSYGKAGMYEKINSV 327
>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
Length = 687
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 2/132 (1%)
Query: 23 KLALQLFKNPNPNANDTEAP-PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT 81
K AL++FK + D +A P ++ Y+++I+ L F E +++ ++ H
Sbjct: 482 KDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRG 541
Query: 82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRM 141
++P+ I + ++I + L+ A Q+FD M S + V + TL+N G++D
Sbjct: 542 -IVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDG 600
Query: 142 KELFISFNLKAI 153
ELF + I
Sbjct: 601 LELFCEMGRRGI 612
Score = 35.8 bits (81), Expect = 7.0, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
NL+ ++ +I AK D+ ++LH++ +T ++ + + +I + L AL +
Sbjct: 394 NLITFNTLIDGYCGAKRIDDGMELLHEMT-ETGLVADTTTYNTLIHGFYLVGDLNAALDL 452
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
EM S + + + +TLL+ L GKL E+F
Sbjct: 453 LQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMF 488
>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
Length = 687
Score = 52.4 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 2/132 (1%)
Query: 23 KLALQLFKNPNPNANDTEAP-PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT 81
K AL++FK + D +A P ++ Y+++I+ L F E +++ ++ H
Sbjct: 482 KDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRG 541
Query: 82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRM 141
++P+ I + ++I + L+ A Q+FD M S + V + TL+N G++D
Sbjct: 542 -IVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDG 600
Query: 142 KELFISFNLKAI 153
ELF + I
Sbjct: 601 LELFCEMGRRGI 612
Score = 35.8 bits (81), Expect = 7.0, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
NL+ ++ +I AK D+ ++LH++ +T ++ + + +I + L AL +
Sbjct: 394 NLITFNTLIDGYCGAKRIDDGMELLHEMT-ETGLVADTTTYNTLIHGFYLVGDLNAALDL 452
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
EM S + + + +TLL+ L GKL E+F
Sbjct: 453 LQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMF 488
>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
Length = 686
Score = 52.4 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 2/132 (1%)
Query: 23 KLALQLFKNPNPNANDTEAP-PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT 81
K AL++FK + D +A P ++L Y+++I L F E +++ ++ H
Sbjct: 480 KDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRG 539
Query: 82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRM 141
++P+ I + ++I + L+ A Q+F M S + V + NTL+N G++D
Sbjct: 540 -IVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDG 598
Query: 142 KELFISFNLKAI 153
ELF + I
Sbjct: 599 LELFCEMGRRGI 610
>gi|449435037|ref|XP_004135302.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
mitochondrial-like [Cucumis sativus]
Length = 519
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 71/123 (57%), Gaps = 4/123 (3%)
Query: 26 LQLFKNPNPNANDT--EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRV 83
LQ FK+ +A A L F++ YD++I LG+ K +M+ +L ++K + R+
Sbjct: 111 LQRFKDDWKSALGVFRWAESLSGFKHTPDLYDILIDTLGKTKQLVKMRGMLEEMK-EARL 169
Query: 84 IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKE 143
+ + + + F G + E+A+++FD++ ++ +++ +S+N LL+ L K+++ ++
Sbjct: 170 VTLDTVAKAMRRFAGAGQW-ENAVRIFDDLETYGLEKNTESMNVLLDTLCKEKKVEKARQ 228
Query: 144 LFI 146
+++
Sbjct: 229 MYL 231
>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
Length = 687
Score = 52.4 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 2/132 (1%)
Query: 23 KLALQLFKNPNPNANDTEAP-PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT 81
K AL++FK + D +A P ++ Y+++I+ L F E +++ ++ H
Sbjct: 482 KDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRG 541
Query: 82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRM 141
++P+ I + ++I + L+ A Q+FD M S + V + TL+N G++D
Sbjct: 542 -IVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDG 600
Query: 142 KELFISFNLKAI 153
ELF + I
Sbjct: 601 LELFCEMGRRGI 612
Score = 35.8 bits (81), Expect = 7.5, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
NL+ ++ +I AK D+ ++LH++ +T ++ + + +I + L AL +
Sbjct: 394 NLITFNTLIDGYCGAKRIDDGMELLHEMT-ETGLVADTTTYNTLIHGFYLVGDLNAALDL 452
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
EM S + + + +TLL+ L GKL E+F
Sbjct: 453 LQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMF 488
>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
Length = 687
Score = 52.4 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 2/132 (1%)
Query: 23 KLALQLFKNPNPNANDTEAP-PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT 81
K AL++FK + D +A P ++ Y+++I+ L F E +++ ++ H
Sbjct: 482 KDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRG 541
Query: 82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRM 141
++P+ I + ++I + L+ A Q+FD M S + V + TL+N G++D
Sbjct: 542 -IVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDG 600
Query: 142 KELFISFNLKAI 153
ELF + I
Sbjct: 601 LELFCEMGRRGI 612
Score = 35.8 bits (81), Expect = 7.5, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
NL+ ++ +I AK D+ ++LH++ +T ++ + + +I + L AL +
Sbjct: 394 NLITFNTLIDGYCGAKRIDDGMELLHEMT-ETGLVADTTTYNTLIHGFYLVGDLNAALDL 452
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
EM S + + + +TLL+ L GKL E+F
Sbjct: 453 LQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMF 488
>gi|359483659|ref|XP_002274224.2| PREDICTED: pentatricopeptide repeat-containing protein At2g17525,
mitochondrial-like [Vitis vinifera]
Length = 686
Score = 52.4 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 72/149 (48%), Gaps = 16/149 (10%)
Query: 3 KAKP--TSPF----RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDL 56
++KP T+P +A L+ QK ALQ F+ A L F +N Y
Sbjct: 82 QSKPISTTPVPTHQHIAHLILEQKSASQALQTFR---------WASNLPNFIHNQSTYRA 132
Query: 57 IITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSF 116
+I KL + F+ ++++L ++ P+E IF ++ GRAR++ ++V D + F
Sbjct: 133 LIHKLCSFRRFETVKEVLDEMPSSIGSPPDESIFVTIVRGLGRARMVRQMIKVLDLITKF 192
Query: 117 NVQRTVKSLNTLLNALLTCGKLDRMKELF 145
++K N++L+ L+ +D +E +
Sbjct: 193 GENPSLKIFNSILDVLVK-EDIDLAREFY 220
>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
Length = 687
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 2/132 (1%)
Query: 23 KLALQLFKNPNPNANDTEAP-PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT 81
K AL++FK + D +A P ++ Y+++I+ L F E +++ ++ H
Sbjct: 482 KDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRG 541
Query: 82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRM 141
++P+ I + ++I + L+ A Q+FD M S + V + TL+N G++D
Sbjct: 542 -IVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDG 600
Query: 142 KELFISFNLKAI 153
ELF + I
Sbjct: 601 LELFCEMGRRGI 612
Score = 35.8 bits (81), Expect = 7.6, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
NL+ ++ +I AK D+ ++LH++ +T ++ + + +I + L AL +
Sbjct: 394 NLITFNTLIDGYCGAKRIDDGMELLHEMT-ETGLVADTTTYNTLIHGFYLVGDLNAALDL 452
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
EM S + + + +TLL+ L GKL E+F
Sbjct: 453 LQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMF 488
>gi|449436321|ref|XP_004135941.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g53170-like [Cucumis sativus]
gi|449514880|ref|XP_004164505.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g53170-like [Cucumis sativus]
Length = 477
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 49/95 (51%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+ II G+AKMF++M+ +L ++ P+ I F I YG + +E +
Sbjct: 232 NTVTYNTIINGFGKAKMFEQMESLLLEMIESDSCPPDLITFNTFIRAYGNSEQIEKMEKW 291
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
+ E ++ + + N+++++ G D+MK +
Sbjct: 292 YKEFQLMGIEPDIWTYNSMISSYGKAGMYDKMKSV 326
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F ++ + II GRA +EM++ +K + P + +C++++ YG++ LE
Sbjct: 335 FSPTIVTMNTIIDSFGRAGNIEEMEEYFKNMKFQG-MKPNSVTYCSLVNAYGKSGDLEKV 393
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFI 146
+ ++ + +V N L+N G + +M ELF+
Sbjct: 394 DSILRQIENSDVVPDTPLFNCLINVYGQAGNVRKMGELFL 433
>gi|361069867|gb|AEW09245.1| Pinus taeda anonymous locus UMN_1072_01 genomic sequence
gi|383137232|gb|AFG49711.1| Pinus taeda anonymous locus UMN_1072_01 genomic sequence
gi|383137233|gb|AFG49712.1| Pinus taeda anonymous locus UMN_1072_01 genomic sequence
gi|383137234|gb|AFG49713.1| Pinus taeda anonymous locus UMN_1072_01 genomic sequence
gi|383137235|gb|AFG49714.1| Pinus taeda anonymous locus UMN_1072_01 genomic sequence
gi|383137236|gb|AFG49715.1| Pinus taeda anonymous locus UMN_1072_01 genomic sequence
gi|383137238|gb|AFG49717.1| Pinus taeda anonymous locus UMN_1072_01 genomic sequence
gi|383137239|gb|AFG49718.1| Pinus taeda anonymous locus UMN_1072_01 genomic sequence
gi|383137242|gb|AFG49720.1| Pinus taeda anonymous locus UMN_1072_01 genomic sequence
gi|383137243|gb|AFG49721.1| Pinus taeda anonymous locus UMN_1072_01 genomic sequence
gi|383137244|gb|AFG49722.1| Pinus taeda anonymous locus UMN_1072_01 genomic sequence
gi|383137245|gb|AFG49723.1| Pinus taeda anonymous locus UMN_1072_01 genomic sequence
gi|383137246|gb|AFG49724.1| Pinus taeda anonymous locus UMN_1072_01 genomic sequence
gi|383137247|gb|AFG49725.1| Pinus taeda anonymous locus UMN_1072_01 genomic sequence
gi|383137248|gb|AFG49726.1| Pinus taeda anonymous locus UMN_1072_01 genomic sequence
gi|383137249|gb|AFG49727.1| Pinus taeda anonymous locus UMN_1072_01 genomic sequence
Length = 93
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y++ + KL AK FD +++IL ++ E I +I YG A + +HA++ F M
Sbjct: 17 YEVTVKKLAFAKEFDAIEEILEHSLQVSKPCSEAFI-NRIIMLYGLAGMPQHAIKTFHRM 75
Query: 114 PSFNVQRTVKSLNTLLNA 131
+ N+ T+KS N LLNA
Sbjct: 76 KNLNISPTIKSFNALLNA 93
>gi|359494840|ref|XP_003634851.1| PREDICTED: pentatricopeptide repeat-containing protein At1g61870,
mitochondrial-like [Vitis vinifera]
Length = 396
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 5/140 (3%)
Query: 13 ASLLHLQKHPKLALQLFK---NPNPNANDTEAPPLKPFRY-NLLHYDLIITKLGRAKMFD 68
A+ L ++ + AL L K +P A L P + + + + + I+KL +K FD
Sbjct: 27 ATPLSSKEKSRAALSLLKSEQDPQRILEICRAAALTPESHLDRVAFSVAISKLADSKHFD 86
Query: 69 EMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTL 128
++ L +LK + E + + I +G+A +L A++ F++M V RTV+SLN L
Sbjct: 87 SIRHFLDELKARPDLRTERFV-SHAIVLFGQAGMLNDAVRTFEQMHQLGVDRTVRSLNAL 145
Query: 129 LNALLTCGKLDRMKELFISF 148
L + + +F+ F
Sbjct: 146 LFSCILAKNYKEANRIFLEF 165
>gi|7529747|emb|CAB86932.1| putative protein [Arabidopsis thaliana]
gi|24030379|gb|AAN41351.1| unknown protein [Arabidopsis thaliana]
Length = 526
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 64 AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVK 123
+K++D+MQ+ + + P+ + + +I YGRAR E AL VF+EM V+ T K
Sbjct: 242 SKIYDQMQR--------SDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHK 293
Query: 124 SLNTLLNALLTCGKLDRMKELFIS 147
+ N LL+A G +++ K +F S
Sbjct: 294 AYNILLDAFAISGMVEQAKTVFKS 317
>gi|18394846|ref|NP_564110.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174883|sp|Q9LN22.1|PPR54_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g20300, mitochondrial; Flags: Precursor
gi|9558596|gb|AAF88159.1|AC026234_10 Contains similarity to a hypothetical protein T3P18.15 gi|5454201
from Arabidopsis thaliana BAC T3P18 gb|AC005698 and
contains multiple PPR PF|01535 repeats [Arabidopsis
thaliana]
gi|17386104|gb|AAL38598.1|AF446865_1 At1g20300/F14O10_8 [Arabidopsis thaliana]
gi|15450347|gb|AAK96467.1| At1g20300/F14O10_8 [Arabidopsis thaliana]
gi|332191838|gb|AEE29959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 537
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 9/118 (7%)
Query: 52 LHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFD 111
+ + ++I+ L R + E Q LK R P+ I++ N++ + RA + A +VF
Sbjct: 222 IAFSIVISNLSRKRRASEAQSFFDSLK--DRFEPDVIVYTNLVRGWCRAGEISEAEKVFK 279
Query: 112 EMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMND 169
EM ++ V + + +++AL CG++ R ++F +LD C+ I N+
Sbjct: 280 EMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFAD-------MLDSGCAPNAITFNN 330
>gi|147767812|emb|CAN77919.1| hypothetical protein VITISV_027645 [Vitis vinifera]
Length = 396
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 5/140 (3%)
Query: 13 ASLLHLQKHPKLALQLFK---NPNPNANDTEAPPLKPFRY-NLLHYDLIITKLGRAKMFD 68
A+ L ++ + AL L K +P A L P + + + + + I+KL +K FD
Sbjct: 27 ATPLSSKEKSRAALSLLKSEQDPQRILEICRAAALTPESHLDRVAFSVAISKLADSKHFD 86
Query: 69 EMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTL 128
++ L +LK + E + + I +G+A +L A++ F++M V RTV+SLN L
Sbjct: 87 SIRHFLDELKARPDLRTERFV-SHAIVLFGQAGMLNDAVRTFEQMHQLGVDRTVRSLNAL 145
Query: 129 LNALLTCGKLDRMKELFISF 148
L + + +F+ F
Sbjct: 146 LFSCILAKNYKEANRIFLEF 165
>gi|359494844|ref|XP_003634853.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g61870, mitochondrial-like [Vitis vinifera]
Length = 336
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 5/140 (3%)
Query: 13 ASLLHLQKHPKLALQLFK---NPNPNANDTEAPPLKPFRY-NLLHYDLIITKLGRAKMFD 68
A+ L ++ + AL L K +P A L P + + + + + I+KL +K FD
Sbjct: 27 ATPLSSKEKSRAALSLLKSEQDPQRILEICRAAALTPESHLDRVAFSVAISKLADSKHFD 86
Query: 69 EMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTL 128
++ L +LK + E + + I +G+A +L A++ F++M V RTV+SLN L
Sbjct: 87 SIRHFLDELKARPDLRTERFV-SHAIVLFGQAGMLNDAVRTFEQMHQLGVDRTVRSLNAL 145
Query: 129 LNALLTCGKLDRMKELFISF 148
L + + +F+ F
Sbjct: 146 LFSCILAKNYKEANRIFLEF 165
>gi|224139020|ref|XP_002322960.1| predicted protein [Populus trichocarpa]
gi|222867590|gb|EEF04721.1| predicted protein [Populus trichocarpa]
Length = 694
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 11/150 (7%)
Query: 5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRA 64
KP S +L LL +K PK AL LF + + T +P + + LI+ +L
Sbjct: 6 KPLSARQLFKLLKAEKSPKSALALFDSASRQPGYTHSPHI---------FLLILRRLSDP 56
Query: 65 KMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPS-FNVQRTVK 123
K+ + +I+ +K E+++ V+ Y ++++ AL F +M F + ++
Sbjct: 57 KLVVHVTRIVELIKTQKCKCTEDVVL-TVLKAYAKSKMPNEALDCFQKMEEIFGCKPGIR 115
Query: 124 SLNTLLNALLTCGKLDRMKELFISFNLKAI 153
S N LLNA + L++ + F I
Sbjct: 116 SYNALLNAFIEANLLEKAESFLAYFETVGI 145
>gi|30694913|ref|NP_191463.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218525907|sp|Q9LYT2.2|PP287_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g59040
gi|332646344|gb|AEE79865.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 583
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 64 AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVK 123
+K++D+MQ+ + + P+ + + +I YGRAR E AL VF+EM V+ T K
Sbjct: 299 SKIYDQMQR--------SDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHK 350
Query: 124 SLNTLLNALLTCGKLDRMKELFIS 147
+ N LL+A G +++ K +F S
Sbjct: 351 AYNILLDAFAISGMVEQAKTVFKS 374
>gi|383137241|gb|AFG49719.1| Pinus taeda anonymous locus UMN_1072_01 genomic sequence
Length = 93
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y++ + KL AK FD +++IL ++ E I +I YG A + +HA++ F M
Sbjct: 17 YEVTVKKLAFAKEFDAIEEILEHSLQVSKPCSEAFI-NRIIMLYGLAGMPQHAIKTFYRM 75
Query: 114 PSFNVQRTVKSLNTLLNA 131
+ N+ T+KS N LLNA
Sbjct: 76 KNLNISPTIKSFNALLNA 93
>gi|42572723|ref|NP_974457.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332646343|gb|AEE79864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 590
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 64 AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVK 123
+K++D+MQ+ + + P+ + + +I YGRAR E AL VF+EM V+ T K
Sbjct: 306 SKIYDQMQR--------SDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHK 357
Query: 124 SLNTLLNALLTCGKLDRMKELFIS 147
+ N LL+A G +++ K +F S
Sbjct: 358 AYNILLDAFAISGMVEQAKTVFKS 381
>gi|224075357|ref|XP_002304600.1| predicted protein [Populus trichocarpa]
gi|222842032|gb|EEE79579.1| predicted protein [Populus trichocarpa]
Length = 641
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 66/131 (50%), Gaps = 15/131 (11%)
Query: 18 LQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQL 77
++ P ++ ++FK+ P + ++ + +I F ++++L ++
Sbjct: 36 IEHDPPISDKIFKS---------GPKMGSYKLGDSTFYSLIDNYANLGDFKSLEKVLDRM 86
Query: 78 KHDTRVIPEEIIFCNVISF--YGRARLLEHALQVFDEMP-SFNVQRTVKSLNTLLNALLT 134
+ + RV+ E+ C V+ F YG+A L E A+ +FD M F +RTVKS N++LN ++
Sbjct: 87 RCEKRVVVEK---CFVVIFKAYGKAHLPEKAVGLFDRMAYEFECKRTVKSFNSVLNVIIQ 143
Query: 135 CGKLDRMKELF 145
G R E +
Sbjct: 144 EGLFYRALEFY 154
Score = 39.7 bits (91), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 9/119 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N+L ++L+I + + + D+ Q+ + ++ P+ +C ++ +A ++ A+ +
Sbjct: 168 NVLTFNLVIKTMCKVGLVDDAVQMFRDMPV-SKCQPDVYTYCTLMDGLCKADRIDEAVSL 226
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA--------VLDGLC 160
DEM + + N L+N L G L R+ +L + LK A ++ GLC
Sbjct: 227 LDEMQIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLC 285
>gi|224110770|ref|XP_002315631.1| predicted protein [Populus trichocarpa]
gi|222864671|gb|EEF01802.1| predicted protein [Populus trichocarpa]
Length = 452
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 70/135 (51%), Gaps = 13/135 (9%)
Query: 15 LLHLQKHPKLALQLFKNPNPNANDTEAPPLKP-FRYNLLHYDLIITKLGRAKMFDEMQQI 73
LL + K AL +F+ L+P +++ YD+++ LG+ K D+M+++
Sbjct: 47 LLRFKDDWKSALGVFR----------WAGLRPGYKHRPEAYDMMVDILGKMKQMDQMREL 96
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L ++ + V + + + A E A+++FDE+ +F +++ +S+N LL+ L
Sbjct: 97 LEEMNRNHLVTLNTV--GKAMRRFSGAGKWEDAVRMFDELGTFGLEKNAESMNLLLDTLC 154
Query: 134 TCGKLDRMKELFISF 148
GK+++ + +F+
Sbjct: 155 KEGKVEQARAIFLEL 169
Score = 42.4 bits (98), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query: 37 NDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISF 96
++ EA P N++ Y II L +++ +E Q+ ++K P+ F ++I
Sbjct: 236 DEMEAQGCPP---NVVTYTTIIVFLAKSQNTEEALQLTQRMK-SAGCKPDTPFFNSLIYI 291
Query: 97 YGRARLLEHALQVFD-EMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAV 155
GRA + A+ VF+ EMP+ V R + N+++ L G + + L A
Sbjct: 292 LGRAGRFQEAVDVFEKEMPNAGVSRDTSTYNSMIAMLCHHGHVSKALSLLREMETSAPFK 351
Query: 156 LDG 158
LDG
Sbjct: 352 LDG 354
>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 628
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
R ++ Y +I LG+A DE H+++ + P+ ++ N+I+F G+A L+ A+
Sbjct: 293 RPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREG-CRPDTVLMNNMINFLGKAGRLDDAI 351
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCGK--------LDRMKELFISFNLKAIAVL-DG 158
++F+EM + +V + NT++ AL +RMK IS + ++L DG
Sbjct: 352 KLFEEMETLRCIPSVVTYNTIIKALFESKSRVSEISSWFERMKGSGISPSPFTYSILIDG 411
Query: 159 LC 160
C
Sbjct: 412 FC 413
Score = 41.6 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I LG+AK +D ++ +LK + + + +I G+A L+ A+ +FDEM
Sbjct: 440 YCSLIDALGKAKRYDLANELFQELKENCGSSSARV-YAVMIKHLGKAGRLDDAVDLFDEM 498
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLD 139
V + N L++ L G LD
Sbjct: 499 NRLGCTPNVYAYNALMSGLARAGMLD 524
>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
Length = 571
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
R ++ Y +I LG+A DE ++++ + P+ I+ N+I+F G+A L+ A+
Sbjct: 297 RPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREG-CRPDTIVMNNMINFLGKAGRLDDAM 355
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCGK--------LDRMKELFISFNLKAIAVL-DG 158
++F EM + +V + NT++ AL +RMKE IS + ++L DG
Sbjct: 356 KLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDG 415
Query: 159 LC 160
C
Sbjct: 416 FC 417
Score = 40.4 bits (93), Expect = 0.27, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I LG+AK +D ++ +LK + + + +I G+A L+ A+ +FDEM
Sbjct: 444 YCSLIDALGKAKRYDLACELFQELKENCGSSSSRV-YAVMIKHLGKAGRLDDAINMFDEM 502
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLD-------RMKE 143
V + N L++ L G LD RM+E
Sbjct: 503 NKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQE 539
>gi|297837243|ref|XP_002886503.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297332344|gb|EFH62762.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 408
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 4/135 (2%)
Query: 16 LHLQKHPKLALQLFK---NPNPNANDTEAPPLKP-FRYNLLHYDLIITKLGRAKMFDEMQ 71
L ++ K AL L K +P+ A L P + + + + L K F +
Sbjct: 41 LTSKEKSKAALSLLKSEKDPDRILEICRAASLTPDCHIDRIAFSAAVENLAEKKHFSAVS 100
Query: 72 QILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA 131
+L + + + E + I Y +A +L+H+L+VF ++ F + RTVKSLN LL A
Sbjct: 101 NLLDGFIENRQDLKSERFAAHAIVLYAQANMLDHSLRVFRDLEKFEIPRTVKSLNALLFA 160
Query: 132 LLTCGKLDRMKELFI 146
L K ++I
Sbjct: 161 CLVAKDYKEAKRVYI 175
>gi|242082341|ref|XP_002445939.1| hypothetical protein SORBIDRAFT_07g028400 [Sorghum bicolor]
gi|241942289|gb|EES15434.1| hypothetical protein SORBIDRAFT_07g028400 [Sorghum bicolor]
Length = 465
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 9/131 (6%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE---EIIFCNVISFYGRARLLEHA 106
N ++ + +L A+ D +++IL Q K +P+ E +I YG+A + HA
Sbjct: 131 NRFAFEDAVARLAGARRNDLVEEILEQHK----ALPQGRREGFVVRIIGLYGKAGMPSHA 186
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSN--LK 164
L+ F EM + RT KSLN + LL D LF K LD + N +K
Sbjct: 187 LRTFQEMGMYGCPRTAKSLNATMKVLLRAQMFDEALWLFEEGPEKYGVELDDISCNTVVK 246
Query: 165 IIMNDSQVRVT 175
I + +R
Sbjct: 247 IYCDMGDLRAA 257
>gi|297820746|ref|XP_002878256.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324094|gb|EFH54515.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 582
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 64 AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVK 123
+K++D+MQ+ + + P+ + + +I YGRAR E AL VF+EM V+ T K
Sbjct: 299 SKIYDQMQR--------SGIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHK 350
Query: 124 SLNTLLNALLTCGKLDRMKELFIS 147
+ N LL+A G +++ K +F S
Sbjct: 351 AYNILLDAFAISGMVEQAKTVFKS 374
Score = 36.2 bits (82), Expect = 4.7, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F N++ Y +I +A ++M ++ +++ + + + I ++ GR + A
Sbjct: 415 FEPNIVTYGTMIKGYAKANDVEKMMEVYEKMRL-SGIKANQTILTTIMDASGRCKDFGSA 473
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
L + EM S V K+ N LL+ T +LD KEL
Sbjct: 474 LGWYKEMESCGVPPDQKAKNVLLSLYSTQDELDEAKEL 511
>gi|376340260|gb|AFB34641.1| hypothetical protein UMN_1072_01, partial [Larix decidua]
gi|376340262|gb|AFB34642.1| hypothetical protein UMN_1072_01, partial [Larix decidua]
Length = 92
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
FR + L Y++ + KL K F +++IL ++ E+ I +I YG A + + A
Sbjct: 9 FRRHGLPYEITVKKLAFTKHFAAIEEILEHSLRVSKPCSEDFI-SRIIKLYGVAGMPQQA 67
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNA 131
++ F +M S ++ T+KS N LLNA
Sbjct: 68 IETFHQMKSLDISPTIKSFNALLNA 92
>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
Length = 638
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
R ++ Y +I LG+A DE ++++ + P+ ++ N+I+F G+A L+ A+
Sbjct: 297 RPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREG-CRPDTVVMNNMINFLGKAGRLDDAM 355
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCGK--------LDRMKELFISFNLKAIAVL-DG 158
++F EM + +V + NT++ AL +RMKE IS + ++L DG
Sbjct: 356 KLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDG 415
Query: 159 LC 160
C
Sbjct: 416 FC 417
Score = 40.4 bits (93), Expect = 0.26, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I LG+AK +D ++ +LK + + + +I G+A L+ A+ +FDEM
Sbjct: 444 YCSLIDALGKAKRYDLACELFQELKENCGSSSARV-YAVMIKHLGKAGRLDDAINMFDEM 502
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLD-------RMKE 143
V + N L++ L G LD RM+E
Sbjct: 503 NKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQE 539
>gi|22325737|ref|NP_671862.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546776|sp|Q84VG6.2|PP160_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g17525, mitochondrial; Flags: Precursor
gi|330251547|gb|AEC06641.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 626
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y + KL + FD + Q+L ++ + P++ IF +I +GRARL++ + V D +
Sbjct: 79 YRALFHKLCVFRRFDTVYQLLDEMPDSIGLPPDDAIFVTIIRGFGRARLIKRVISVVDLV 138
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F ++ ++K N++L+ L+ +D +E F
Sbjct: 139 SKFGIKPSLKVFNSILDVLVK-EDIDIAREFF 169
>gi|297844992|ref|XP_002890377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336219|gb|EFH66636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 537
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 9/118 (7%)
Query: 52 LHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFD 111
+ + ++I+ L R + E Q LK R P+ I++ N++ + RA + A +VF
Sbjct: 222 IAFSIVISNLSRKRRASEAQSFFDSLKD--RFEPDVIVYTNLVRGWCRAGEISEAEKVFK 279
Query: 112 EMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMND 169
+M ++ V + + +++AL CG++ R ++F +LD C+ I N+
Sbjct: 280 DMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFAD-------MLDSGCAPNAITFNN 330
>gi|302771417|ref|XP_002969127.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
gi|300163632|gb|EFJ30243.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
Length = 646
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 38 DTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFY 97
+ EA + P N++ Y+ +I RA + DE + L + P+E +C +IS +
Sbjct: 205 EMEAAGISP---NIVTYNELIAAYARAGLCDEAAALKKSLLSKG-LCPDEFTYCTLISAF 260
Query: 98 GRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
RA E AL+ F EM N + + N L++ KLD M ++F
Sbjct: 261 NRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVF 308
Score = 40.0 bits (92), Expect = 0.34, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I+ RA+ +++ + +++ T P + + +I YGR L+ ++VF M
Sbjct: 253 YCTLISAFNRAERYEKALETFTEMRK-TNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFM 311
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
N + + N+LL + CG L + +F
Sbjct: 312 QEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVF 343
>gi|255579531|ref|XP_002530608.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529856|gb|EEF31788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 596
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 50/99 (50%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
+R++ +Y ++ + + F + +L +++ D V+ +F +I + ARL+E A
Sbjct: 136 YRHSYENYKAMVKIFSKMRQFGAVWALLEEMRKDNSVLITSELFIVLIRRFASARLVEKA 195
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
++V DEMP + + LL+AL G + + LF
Sbjct: 196 IEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKQAASLF 234
>gi|302784330|ref|XP_002973937.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
gi|300158269|gb|EFJ24892.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
Length = 823
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 38 DTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFY 97
+ EA + P N++ Y+ +I RA + DE + L + P+E +C +IS +
Sbjct: 344 EMEAAGISP---NIVTYNELIAAYARAGLCDEAAALKKSLLSKG-LCPDEFTYCTLISAF 399
Query: 98 GRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
RA E AL+ F EM N + + N L++ KLD M ++F
Sbjct: 400 NRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVF 447
Score = 40.0 bits (92), Expect = 0.37, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I+ RA+ +++ + +++ T P + + +I YGR L+ ++VF M
Sbjct: 392 YCTLISAFNRAERYEKALETFTEMR-KTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFM 450
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
N + + N+LL + CG L + +F
Sbjct: 451 QEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVF 482
>gi|356575482|ref|XP_003555869.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like [Glycine max]
Length = 576
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+ +++ Y+L+I G+ ++ E + QL + R IP E + +I Y + LLE A
Sbjct: 151 FKPDVICYNLLIEAFGQKLLYKEAESTYLQLL-EARCIPTEDTYALLIKAYCISGLLEKA 209
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
VF EM ++ + + N +N L+ G D+ +E+F
Sbjct: 210 EAVFAEMRNYGLPSSAVVYNAYINGLMKGGNSDKAEEIF 248
Score = 38.1 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ I L + D+ ++I ++K D P + +I+ YG+A AL++F EM
Sbjct: 228 YNAYINGLMKGGNSDKAEEIFKRMKKDA-CKPTTETYTMLINLYGKAGKSFMALKLFHEM 286
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
S + + + + L+NA G ++ +E+F
Sbjct: 287 MSHDCKPNICTYTALVNAFAREGLCEKAEEVF 318
>gi|227463004|gb|ACP39954.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227463006|gb|ACP39955.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 547
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 39 TEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYG 98
T A K F+YN Y+ +I LG+ K F ++ +++++K +R + + F + +
Sbjct: 145 TWAEKQKGFKYNTESYNALIEALGKIKQFKLIRSLVNEMK--SRKLLNKDTFALISRRHA 202
Query: 99 RARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
RAR +E A++ F+ M F + N LL+ L +++ ++F
Sbjct: 203 RARKVEEAIEAFERMEEFGFKLETSDFNRLLDTLCKSRHVEKANKVF 249
Score = 38.9 bits (89), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F +++ Y ++I+ +AK +D ++ H+++ P ++C +I+ G + L A
Sbjct: 292 FEPDVVTYGILISAYCKAKKYDAAIELFHEMEAKN-CKPTPHVYCTLINGLGSEKRLSEA 350
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD 139
L+ F+ S + N+L+ A ++D
Sbjct: 351 LEFFERFKSCGFTPEAPTYNSLVGAYCWSMRID 383
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +++ G+ + ++ ++K+D P+ + + +IS Y +A+ + A+++F EM
Sbjct: 264 YTILLEGWGKEHNLLRLDEVYLEMKYDG-FEPDVVTYGILISAYCKAKKYDAAIELFHEM 322
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF 148
+ N + T TL+N L + +L E F F
Sbjct: 323 EAKNCKPTPHVYCTLINGLGSEKRLSEALEFFERF 357
>gi|357159149|ref|XP_003578355.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18900-like [Brachypodium distachyon]
Length = 857
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 8/108 (7%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+++ Y +I LG+A+ F M+ +LH++ D R P + + +I YGRA L A
Sbjct: 360 FKHDGHTYTTMIGILGQARQFGIMRNLLHEMNRD-RCKPTVVTYNRIIHAYGRANYLREA 418
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD-------RMKELFIS 147
++VF+EM + + TL++ G L+ RM+E+ +S
Sbjct: 419 VKVFEEMEEAGYEPDRVTYCTLIDIHAKAGYLEVAMDLYGRMQEVGLS 466
Score = 42.0 bits (97), Expect = 0.094, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
FR + + Y +++ LG DE + + +++ D P+E ++ ++ +G+A ++ A
Sbjct: 535 FRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRRDW--APDEPVYGLLVDLWGKAGNVDKA 592
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
L + M +Q V + N+LL+A L K++R ++ +
Sbjct: 593 LGWYHAMLQDGLQPNVPTCNSLLSAFL---KINRFQDAY 628
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ II GRA E ++ +++ + P+ + +C +I + +A LE A+ ++ M
Sbjct: 402 YNRIIHAYGRANYLREAVKVFEEME-EAGYEPDRVTYCTLIDIHAKAGYLEVAMDLYGRM 460
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ + + ++N L G+L +LF
Sbjct: 461 QEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLF 492
>gi|242061532|ref|XP_002452055.1| hypothetical protein SORBIDRAFT_04g017800 [Sorghum bicolor]
gi|241931886|gb|EES05031.1| hypothetical protein SORBIDRAFT_04g017800 [Sorghum bicolor]
Length = 810
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 59/108 (54%), Gaps = 14/108 (12%)
Query: 25 ALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVI 84
AL+LFKN + + N++ Y+ ++ L RA+ +++ +++ ++ D +
Sbjct: 496 ALELFKNMS-------------CKRNVVTYNYMLKGLCRAEQWEDAGKLVAEMVKD-ECL 541
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNAL 132
P E+ F +IS+ + +E A++VF++MP +N V +TL+N L
Sbjct: 542 PNEVTFSTLISYLCQKGFVECAIEVFEKMPKYNCMPNVIIYSTLINGL 589
Score = 40.0 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 46 PFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEH 105
P++ N + Y ++ L RA +D++ +++ ++ + + +E+ F +I + L+++
Sbjct: 402 PWKPNTVCYRSVLKGLCRADRWDDVGKLVAEMIRNQLNL-DEVTFGLIIDCLCQKGLVDY 460
Query: 106 ALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAV-----LDGLC 160
+V EM F + N+L+N G +D ELF + + K V L GLC
Sbjct: 461 GAEVLREMTKFGCSPDIIIYNSLINGFSENGSVDDALELFKNMSCKRNVVTYNYMLKGLC 520
Score = 39.3 bits (90), Expect = 0.62, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 11/124 (8%)
Query: 43 PLKPFRYNLLHYDLIITKLGR-AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRAR 101
P KP ++ Y+ ++ L R + D I ++ D P+E+ F VIS+
Sbjct: 300 PCKP---DIFSYNTVMKGLCRDGRWEDAGTLIAGMVRKDCP--PDEVTFNTVISYLCHRG 354
Query: 102 LLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA-----IAVL 156
L++ A++V ++MP + + + + L+NAL G +D EL + K +VL
Sbjct: 355 LVDCAMEVVEQMPKYGCKPDNFTYSALVNALSERGCVDDALELLRTIPWKPNTVCYRSVL 414
Query: 157 DGLC 160
GLC
Sbjct: 415 KGLC 418
>gi|242058841|ref|XP_002458566.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
gi|241930541|gb|EES03686.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
Length = 796
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
R +++ + ++I+ L R + F E+ +L +++ + P E+I+ +I ++ R AL
Sbjct: 278 RPSIVTFGILISGLARGQQFGEVGAVLQEMQ-GFGITPNEVIYNEMIGWHCRKGHCSEAL 336
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAV 155
++FDEM S +++TV + N + AL G+++ +++ L + V
Sbjct: 337 KLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEKILDEMLLAGMMV 384
Score = 38.9 bits (89), Expect = 0.71, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLL 103
+K ++ Y +II + DE ++ H + P ++ + ++ Y ++
Sbjct: 660 VKDIELGVIGYTIIIQGFCKIGKIDEAVMYFKEM-HSRGIPPNKMTYTTLMFAYSKSGNK 718
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKE 143
E A ++FDEM S + S NTL++ LD+M E
Sbjct: 719 EEASKLFDEMVSLGIVPDSVSYNTLISGFCEVDSLDKMVE 758
Score = 36.6 bits (83), Expect = 3.8, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 14/131 (10%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQL-KHDTRVIPEEIIFCNVISFYGRARL 102
LKP +++ Y II +AK + + L +L K+ R P +I+ +I YGR
Sbjct: 558 LKP---DIVTYGTIIDGYCKAKDMHKANEYLTELMKNGLR--PNAVIYNALIGGYGRNGN 612
Query: 103 LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA-------- 154
+ A+ + D M +Q T + N+L+ + G ++ +K +F +K I
Sbjct: 613 ISDAIGILDTMKYNGIQPTPVTYNSLMYWMCHAGLVEEVKAVFAQCIVKDIELGVIGYTI 672
Query: 155 VLDGLCSNLKI 165
++ G C KI
Sbjct: 673 IIQGFCKIGKI 683
>gi|293334061|ref|NP_001169447.1| uncharacterized protein LOC100383318 [Zea mays]
gi|224029437|gb|ACN33794.1| unknown [Zea mays]
gi|414869277|tpg|DAA47834.1| TPA: hypothetical protein ZEAMMB73_389575 [Zea mays]
Length = 459
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 7/121 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE---EIIFCNVISFYGRARLLEHA 106
N ++ + +L A+ D +++IL Q K +P+ E +I YG+A + HA
Sbjct: 125 NRFAFEDAVARLAGARRNDLVEEILEQHK----ALPQGRREGFVVRIIGLYGKAGMPGHA 180
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKII 166
L+ F EM + RT KSLN + LL D LF K +D + N +
Sbjct: 181 LRTFQEMGMYGCPRTAKSLNATMKVLLRARMFDEALSLFEEGPEKYDVEVDDISCNTVVK 240
Query: 167 M 167
M
Sbjct: 241 M 241
>gi|15220591|ref|NP_172051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|334182311|ref|NP_001184914.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213450|sp|Q9SYK1.1|PPR11_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g05600
gi|4836924|gb|AAD30626.1|AC007153_18 Hypothetical protein [Arabidopsis thaliana]
gi|53828567|gb|AAU94393.1| At1g05600 [Arabidopsis thaliana]
gi|56790224|gb|AAW30029.1| At1g05600 [Arabidopsis thaliana]
gi|332189741|gb|AEE27862.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332189742|gb|AEE27863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 9/138 (6%)
Query: 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMF 67
+P L+ +L QK+P AL+LF+ + +N Y +I LG++
Sbjct: 11 TPSLLSQILKKQKNPVTALKLFEEAKER--------FPSYGHNGSVYATMIDILGKSNRV 62
Query: 68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNT 127
EM+ ++ ++K D+ ++ +F +VI + RA LE A+ +F + FN S +T
Sbjct: 63 LEMKYVIERMKEDS-CECKDSVFASVIRTFSRAGRLEDAISLFKSLHEFNCVNWSLSFDT 121
Query: 128 LLNALLTCGKLDRMKELF 145
LL ++ +L+ +F
Sbjct: 122 LLQEMVKESELEAACHIF 139
>gi|449503427|ref|XP_004161997.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g71060, mitochondrial-like [Cucumis sativus]
Length = 542
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
Query: 41 APPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRA 100
A K F++ Y+L+I LG+ K F+ + ++ +K + I F + Y RA
Sbjct: 146 AEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMKR--KGILSRETFALITRRYARA 203
Query: 101 RLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
R ++ A++ F++M F Q V N LL+ L + + +E+F
Sbjct: 204 RKVKEAVESFEKMEKFGFQMGVSDFNRLLDTLCKSRNVKKAQEVF 248
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 62/127 (48%), Gaps = 9/127 (7%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+ ++ Y +++ G+ + ++ ++ +++ D P+ + F +I+ + +AR + A
Sbjct: 256 FKPDIKSYTILLEGWGQDQNLLKLNEVYREMR-DEGFEPDVVTFGILINAHCKARKYDEA 314
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDG 158
+++F EM + N++ + TL+N L + +L E F L AV+
Sbjct: 315 IRLFHEMEAKNIKPSPHVFCTLINGLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVGA 374
Query: 159 LCSNLKI 165
C ++K+
Sbjct: 375 YCWSMKM 381
>gi|449465535|ref|XP_004150483.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
mitochondrial-like [Cucumis sativus]
Length = 542
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
Query: 41 APPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRA 100
A K F++ Y+L+I LG+ K F+ + ++ +K + I F + Y RA
Sbjct: 146 AEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMKR--KGILSRETFALITRRYARA 203
Query: 101 RLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
R ++ A++ F++M F Q V N LL+ L + + +E+F
Sbjct: 204 RKVKEAVESFEKMEKFGFQMGVSDFNRLLDTLCKSRNVKKAQEVF 248
Score = 39.3 bits (90), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 62/127 (48%), Gaps = 9/127 (7%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+ ++ Y +++ G+ + ++ ++ +++ D P+ + F +I+ + +AR + A
Sbjct: 256 FKPDIKSYTILLEGWGQDQNLLKLNEVYREMR-DEGFEPDVVTFGILINAHCKARKYDEA 314
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDG 158
+++F EM + N++ + TL+N L + +L E F L AV+
Sbjct: 315 IRLFHEMEAKNIKPSPHVFCTLINGLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVGA 374
Query: 159 LCSNLKI 165
C ++K+
Sbjct: 375 YCWSMKM 381
>gi|255547888|ref|XP_002515001.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546052|gb|EEF47555.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 466
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 65/132 (49%), Gaps = 11/132 (8%)
Query: 15 LLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 74
L + K AL +F+ A +P YD ++ +G+ K D+M+ +L
Sbjct: 58 LFRFKDDWKSALGVFRWAESRAGYKHSPEA---------YDTMVDIMGKMKQMDQMEFLL 108
Query: 75 HQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLT 134
+++ V + + + + AR E+ L+VFD++ +F +++ +S+N LL+ L
Sbjct: 109 EEMEKGQHVTLKTV--GKAMRRFAGARQWENVLRVFDKLGTFGLEKNTESMNLLLDTLCK 166
Query: 135 CGKLDRMKELFI 146
K++ +E+F+
Sbjct: 167 ERKVELAREIFL 178
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 37 NDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISF 96
++ EA L P N++ Y +++ L +++ ++E QI ++K P+ + + ++I
Sbjct: 247 DEMEAQGLIP---NVVTYTSVMSALAKSEEYEEALQIAQRMK-SVGCKPDTLFYNSLIHT 302
Query: 97 YGRARLLEHALQVFD-EMPSFNVQRTVKSLNTLLNAL 132
G+A E A+QVF+ EMP+ V + N+++ L
Sbjct: 303 LGKAGRPEEAIQVFEVEMPNTGVPPNTSTYNSMIAML 339
>gi|359482337|ref|XP_002267057.2| PREDICTED: pentatricopeptide repeat-containing protein At1g80150,
mitochondrial-like [Vitis vinifera]
Length = 405
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 18/133 (13%)
Query: 5 KPTSPFRLASLLHL--QKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLG 62
KP P +L+ L ++ P+ QLFK N E N ++ +++L
Sbjct: 36 KPDKPLEEPALVKLKAERDPERLFQLFKANAHNRLVVE---------NRFAFEDTVSRLA 86
Query: 63 RAKMFDEMQQILHQLKHDTRVIPE---EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQ 119
A FD ++ H L+H + +P+ E +I YG+A +++ A+ F +M F Q
Sbjct: 87 GAGRFDYIE---HLLEHQ-KTLPQGRREGFIVRIIMLYGKAGMIKQAVDTFYDMHLFGCQ 142
Query: 120 RTVKSLNTLLNAL 132
RTVKS N L L
Sbjct: 143 RTVKSFNAALKVL 155
>gi|156070795|gb|ABU45207.1| unknown [Solanum bulbocastanum]
Length = 405
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 9/135 (6%)
Query: 11 RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEM 70
+ S L + P AL+++ + +D PL RY + + +L ++ F ++
Sbjct: 35 KAKSKLKAEHDPDKALEIYSS----VSDRYVSPLSS-RY---AQEFTVKRLAKSHRFSDI 86
Query: 71 QQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLN 130
+ L K+ + I +E ++I YG A + +HAL+++ +M R+ S N LL+
Sbjct: 87 ENFLESHKNSPK-ITQEPFLSSIIRSYGVAGMFDHALKIYHQMDDLGTPRSAISFNVLLS 145
Query: 131 ALLTCGKLDRMKELF 145
A + DR+ +LF
Sbjct: 146 ACVRSKLYDRVPQLF 160
>gi|297743432|emb|CBI36299.3| unnamed protein product [Vitis vinifera]
Length = 353
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 18/133 (13%)
Query: 5 KPTSPFRLASLLHL--QKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLG 62
KP P +L+ L ++ P+ QLFK N E N ++ +++L
Sbjct: 36 KPDKPLEEPALVKLKAERDPERLFQLFKANAHNRLVVE---------NRFAFEDTVSRLA 86
Query: 63 RAKMFDEMQQILHQLKHDTRVIPE---EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQ 119
A FD ++ H L+H + +P+ E +I YG+A +++ A+ F +M F Q
Sbjct: 87 GAGRFDYIE---HLLEHQ-KTLPQGRREGFIVRIIMLYGKAGMIKQAVDTFYDMHLFGCQ 142
Query: 120 RTVKSLNTLLNAL 132
RTVKS N L L
Sbjct: 143 RTVKSFNAALKVL 155
>gi|357148282|ref|XP_003574702.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80150,
mitochondrial-like [Brachypodium distachyon]
Length = 448
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 7/121 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE---EIIFCNVISFYGRARLLEHA 106
N + + +L A+ D +++IL Q K +P+ E +I YG+AR+ EHA
Sbjct: 114 NRFAFQDAVARLSGARRNDLVEEILEQHK----ALPQGRREGFVVRIIGLYGKARMPEHA 169
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKII 166
L+ F EM + T KS N L L+ D +LF K LD + N +
Sbjct: 170 LRTFQEMEMYGCTCTNKSFNATLKVLMQAQLFDEALQLFEEGPGKYGVELDDISYNTVVK 229
Query: 167 M 167
M
Sbjct: 230 M 230
>gi|255561325|ref|XP_002521673.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539064|gb|EEF40660.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 341
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR-ARLL 103
K ++ N Y L+I KL +AK FD ++ I+ ++K + F NVI YG A +
Sbjct: 24 KDYKPNEALYTLVINKLAQAKNFDAIEDIMQRIKLEKSCRLSNGFFYNVIKIYGHLAGRI 83
Query: 104 EHALQVFDEMP-SFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSN 162
+ A+ +MP +N VK+ N +LN L++ D + E++ + + + D C N
Sbjct: 84 KVAIDTLFDMPRGYNCWPDVKTFNLVLNLLVSARIFDVVHEIYEKAPILGVEI-DACCLN 142
Query: 163 LKI 165
+ I
Sbjct: 143 ILI 145
>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
Length = 632
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 14/129 (10%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
R ++ Y +I LG+A DE H+++ + P+ ++ N+I+F G+A L+ L
Sbjct: 297 RPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREG-CKPDTVVMNNMINFLGKAGRLDDGL 355
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN-LKAIAV----------L 156
++F+EM + V + NT++ AL R+ E+F F +K + +
Sbjct: 356 KLFEEMGVSHCIPNVVTYNTIIKALFE--SKSRVSEVFSWFERMKGSGISPSPFTYSILI 413
Query: 157 DGLCSNLKI 165
DG C +I
Sbjct: 414 DGFCKTNRI 422
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I LG+AK +D ++ +LK + + + +I G+A L+ A+ +FDEM
Sbjct: 444 YCSLIDALGKAKRYDLACELFQELKENCGSSSARV-YAVMIKHLGKAGRLDDAINLFDEM 502
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLD 139
V + N L++ L LD
Sbjct: 503 SKLGCTPNVYAYNALMSGLARACMLD 528
>gi|340056466|emb|CCC50799.1| conserved hypothetical protein [Trypanosoma vivax Y486]
Length = 1044
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP-EEIIFCNVISFYGRARLLEH 105
F+ N + ++++ GRAK ++ +++++ + K ++ IP +E + +++ Y RAR+ E
Sbjct: 788 FQENHVTFNILFEGYGRAKRYERIKELVEERK--SKQIPMDEFGYAGLLNIYSRARMAEE 845
Query: 106 ALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKE 143
Q+ DEM + V T + L+TL + G + +M++
Sbjct: 846 ITQIVDEMVAGGVPFTSRMLSTLATSFSNIGDMPKMEQ 883
>gi|414591646|tpg|DAA42217.1| TPA: hypothetical protein ZEAMMB73_097907 [Zea mays]
Length = 476
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+ + Y ++ L +A+ D+ + L Q+ + V+P + N+I Y + A++V
Sbjct: 253 DFVTYSSVVHALCKARAMDKAEAFLRQMVNKG-VLPNNWTYNNLIYGYSSTGQWKEAVRV 311
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA 152
F EM N+ V +LNTL+ +L GK+ +++F + +K
Sbjct: 312 FKEMRRHNILLDVVNLNTLMGSLCKYGKIKEARDVFDTMAMKG 354
>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Cucumis sativus]
gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Cucumis sativus]
Length = 701
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 20/141 (14%)
Query: 38 DTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFY 97
+ E L F Y+ + + L + M ++ +++HQ+K + R + +F ++I+ Y
Sbjct: 421 ENEGADLDTFAYSSM-----VHGLCKKGMLEQAVELIHQMKKNRRKLNSH-VFNSLINGY 474
Query: 98 GRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN-------- 149
RA LE A+ V EM S + TV S NT++N L K +R + ++S
Sbjct: 475 VRAFKLEEAISVLREMKSKDCAPTVVSYNTIINGLC---KAERFSDAYLSLKEMLEEGLK 531
Query: 150 ---LKAIAVLDGLCSNLKIIM 167
+ ++DGLC K+ M
Sbjct: 532 PDMITYSLLIDGLCRGEKVDM 552
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 60/123 (48%), Gaps = 16/123 (13%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I L + DE ++ +++K + + P+ F ++I +A A +VF EM
Sbjct: 258 YNIMINGLCKLGKLDESMEMWNRMKKNEKS-PDLFTFSSMIHGLSKAGNFNAAEKVFQEM 316
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELF-----------ISFNLKAIAVLDGLCSN 162
+ V++ N +L+ L GKL++ EL+ +S+N+ ++ GL N
Sbjct: 317 IESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNNCCNIVSYNM----LIQGLLDN 372
Query: 163 LKI 165
K+
Sbjct: 373 KKV 375
>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 632
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 14/129 (10%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
R ++ Y +I LG+A DE H+++ + P+ ++ N+I+F G+A L+ L
Sbjct: 297 RPDVFTYTELIRGLGKAGRIDEAYHFYHEMQRED-CKPDTVVMNNMINFLGKAGRLDDGL 355
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN-LKAIAV----------L 156
++F+EM + V + NT++ AL R+ E+F F +K + +
Sbjct: 356 KLFEEMGVSHCIPNVVTYNTIIKALFE--SKSRVSEVFSWFERMKGSGISPSPFTYSILI 413
Query: 157 DGLCSNLKI 165
DG C +I
Sbjct: 414 DGFCKTNRI 422
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I LG+AK +D ++ +LK + + + +I G+A L+ A+ +FDEM
Sbjct: 444 YCSLIDALGKAKRYDLACELFQELKENCGSSSARV-YAVMIKHLGKAGRLDDAINLFDEM 502
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLD 139
V + N L++ L LD
Sbjct: 503 SKLGCTPNVYAYNALMSGLARACMLD 528
>gi|297736301|emb|CBI24939.3| unnamed protein product [Vitis vinifera]
Length = 485
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
++ ++++I GR ++M++ ++KH V P I +C+++S Y +A L+ +
Sbjct: 339 TIVTFNIVIEMFGRVGNIEKMEEFFLKMKHQG-VKPNSITYCSLVSAYSKAGYLKKVDSI 397
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFI 146
++ + +V N +L+A G ++RM ELF+
Sbjct: 398 LRQIENSDVTLDTPFFNCVLSAYGQAGDVERMGELFL 434
Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 39/80 (48%)
Query: 52 LHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFD 111
+ Y+ II G+A MF+ M+ L ++ +P+ + I YG + +E + +D
Sbjct: 235 VTYNTIIDGYGKADMFELMESSLTEMIESGTCLPDIFTLNSFIWAYGNSGQIEKMEKWYD 294
Query: 112 EMPSFNVQRTVKSLNTLLNA 131
E ++ +K+ N L+ +
Sbjct: 295 EFQLMGIRPDIKTFNILIRS 314
>gi|388499386|gb|AFK37759.1| unknown [Lotus japonicus]
Length = 500
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 46 PFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEH 105
F+ +++ Y+L+I G+ ++ E + QL + R IP E + +I Y + LLE
Sbjct: 157 SFKQDVICYNLLIDAFGQKFLYKEAESTYLQL-LEARCIPNEDTYALLIKAYCLSGLLEK 215
Query: 106 ALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFI 146
A VF EM ++ + + N+ +N L+ G ++ +E+F+
Sbjct: 216 AEAVFVEMKNYGLPSSAVVYNSYINGLMKGGNPNKAEEIFL 256
>gi|224076667|ref|XP_002304978.1| predicted protein [Populus trichocarpa]
gi|222847942|gb|EEE85489.1| predicted protein [Populus trichocarpa]
Length = 373
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 11/119 (9%)
Query: 53 HYDLIITKLGRAKMFDEMQQILHQLKHDTRV--IPEEIIFCNVISFYGRARLLEHALQVF 110
YD+ + R ++ + I L H + E ++I YG+A + + A ++F
Sbjct: 55 RYDIYAITVKRLIKYNRLSMINEILDHQKNFPDMTNETFTAHLIYLYGKAGMFDDARKLF 114
Query: 111 DEMPSFNVQRTVKSLNTLLNALLTCGKLDRMK--------ELFISFNLKAIAV-LDGLC 160
DEMP RTV S N LL A + + D +K EL I+F++ + ++ ++G C
Sbjct: 115 DEMPDLKCPRTVFSFNALLLACINARRFDEIKKLLADFRSELGITFDVVSYSIAINGFC 173
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 40 EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR 99
E P LK R + ++ ++ A+ FDE++++L + + + + + + I+ + +
Sbjct: 116 EMPDLKCPR-TVFSFNALLLACINARRFDEIKKLLADFRSELGITFDVVSYSIAINGFCK 174
Query: 100 ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKL 138
L A VFDEM +V+ + + NTLLN GK
Sbjct: 175 MGDLVSAEMVFDEMIKSDVEPNLITFNTLLNGFYLNGKF 213
>gi|255553141|ref|XP_002517613.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543245|gb|EEF44777.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 400
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 7/119 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE---EIIFCNVISFYGRARLLEHA 106
N ++ I++L A+ FD ++ H L+H + +P+ E +I YG+A + +HA
Sbjct: 70 NRFAFEDTISRLAGARRFDYIE---HLLEHQ-KTLPQGRREGFIIRIIMLYGKAGMTKHA 125
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKI 165
+ F++M + +RTVKS N L L L+ +K K +LD N+ I
Sbjct: 126 VDTFNDMHMYGCKRTVKSFNAALKVLTETCDLEAIKAFLSEVPEKFDIILDIFSVNIII 184
>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
thaliana]
gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
thaliana]
gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 660
Score = 50.1 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 5/129 (3%)
Query: 41 APPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRA 100
AP + F+ +I + FD ++++L +++ + RVI E F V YG+A
Sbjct: 67 APKMGSFKLGDSTLSSMIESYANSGDFDSVEKLLSRIRLENRVIIERS-FIVVFRAYGKA 125
Query: 101 RLLEHALQVFDEM-PSFNVQRTVKSLNTLLNALLTCGKLDRMKELF---ISFNLKAIAVL 156
L + A+ +F M F +R+VKS N++LN ++ G R E + ++ N+
Sbjct: 126 HLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISP 185
Query: 157 DGLCSNLKI 165
+GL NL I
Sbjct: 186 NGLSFNLVI 194
>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
Length = 667
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 2/133 (1%)
Query: 23 KLALQLFKNPNPNANDTEAP-PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT 81
K AL++FK + D +A P ++ Y+++I L F E +++ ++ H
Sbjct: 475 KDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRG 534
Query: 82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRM 141
++P+ I + +VI + L+ A Q+FD M S V + TL+N G++
Sbjct: 535 -LVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDG 593
Query: 142 KELFISFNLKAIA 154
E+F + I
Sbjct: 594 LEVFCEMGRRGIV 606
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ + ++I AK D+ ++LH++ ++ I + +I + + L AL +
Sbjct: 387 DVITFSILIDGYCGAKRVDDGMKLLHEMSRRG-LVANTITYTTLIHGFCQLGNLNAALDL 445
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
EM S V V + NTLL+ L GKL E+F
Sbjct: 446 LQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMF 481
>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Glycine max]
Length = 642
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 67 FDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPS-FNVQRTVKSL 125
F ++++LHQ+K + RV E+ F + YG+A L E A+ +F M F ++TVKS
Sbjct: 77 FRSLEEVLHQMKRERRVFLEKN-FIVMFKAYGKAHLPEKAVDLFHRMWGEFQCKQTVKSF 135
Query: 126 NTLLNALLTCGKLDRMKELF 145
N++LN ++ G +R E +
Sbjct: 136 NSVLNVIVQEGLFNRALEFY 155
>gi|168040538|ref|XP_001772751.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675976|gb|EDQ62465.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 526
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDT-RVIPEEIIFCNVISFYGRARLLEHALQVFDE 112
Y ++ LG A+ FD + +L +K D RV P IF VI Y +A +E +L+ F
Sbjct: 2 YSTMLRLLGDARRFDYLWALLDDMKRDGHRVTP--TIFLGVIRSYVKANQIEDSLKTFHA 59
Query: 113 MPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA 154
M ++ + T N++++ L T G + ++LF S N + A
Sbjct: 60 MDKYDCKPTTLVYNSMIDILRTSGDYVQAEKLFRSMNPSSCA 101
>gi|297827231|ref|XP_002881498.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327337|gb|EFH57757.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 756
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 20/137 (14%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
++LH K + ALQ F+ R L+ +D T + KM E+Q++
Sbjct: 121 NVLHGAKKLEHALQFFRWTE--------------RSGLIRHDRD-THMKMIKMLGEVQKL 165
Query: 74 LHQ----LKHDTRVIP-EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTL 128
H L + +P +E +F +I YG+A +++ ++++F +M V+RT+KS NTL
Sbjct: 166 NHARCILLDMPEKGVPWDEDMFVVLIESYGKAGIVQESVKIFQKMKDLGVERTIKSYNTL 225
Query: 129 LNALLTCGKLDRMKELF 145
+L G+ K F
Sbjct: 226 FKVILRRGRYMMAKRYF 242
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ II R K DE +++ ++K + P + + +I Y ++ L++F+EM
Sbjct: 292 YNTIINGYCRFKKMDEAEKLFVEMKGNNSE-PSVVTYTTMIKGYLSVDRVDDGLRIFEEM 350
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLD 157
SF ++ + +TLL L GK+ K + + K IA D
Sbjct: 351 RSFGIEPNATTYSTLLPGLCDVGKMVEAKNILKNMMAKHIAPKD 394
>gi|168063169|ref|XP_001783546.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664933|gb|EDQ51635.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 324
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I GRAKM+++ ++ + + V P + + ++I A L+E Q
Sbjct: 114 DVVSYNAVINVFGRAKMWEKALRVKADII-EAGVTPNVVTWTSIIEACATAGLVERVFQE 172
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
FDEM S V N LL A + G+ +R +LF
Sbjct: 173 FDEMLSAGCCPNVDCYNALLQACVMAGQNERAFQLF 208
>gi|242035667|ref|XP_002465228.1| hypothetical protein SORBIDRAFT_01g034600 [Sorghum bicolor]
gi|241919082|gb|EER92226.1| hypothetical protein SORBIDRAFT_01g034600 [Sorghum bicolor]
Length = 557
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 9/115 (7%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L ++ + QQ+ ++ D + P E +C+++S+Y R LE A +V+DEM
Sbjct: 286 YSTVIHGLCEMRLIGDAQQMWDEMV-DRGIQPNEYAYCSLVSYYCRVGDLEKARKVYDEM 344
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLC 160
+ ++T S N L+ G++ E+F ++K I ++ GLC
Sbjct: 345 LAKGFKQTTVSCNILIKGFCVHGRVYDALEVFEEMSVKGIKHDVITYDTLIRGLC 399
>gi|449463623|ref|XP_004149531.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g59040-like [Cucumis sativus]
Length = 580
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 64 AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVK 123
+K++D+MQ+ Q P+ + + +IS YG+AR E AL VF+EM ++ T K
Sbjct: 298 SKIYDQMQRAGLQ--------PDVVSYALLISAYGKARREEEALAVFEEMLDAGIRPTHK 349
Query: 124 SLNTLLNALLTCGKLDRMKELFIS 147
+ N LL+A G +++ K +F S
Sbjct: 350 AYNILLDAFAISGMVEQAKIVFKS 373
>gi|225430810|ref|XP_002271426.1| PREDICTED: pentatricopeptide repeat-containing protein At4g36680,
mitochondrial-like [Vitis vinifera]
Length = 414
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 67/135 (49%), Gaps = 9/135 (6%)
Query: 11 RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEM 70
R S+L + P AL+++ + + + PL RY DL + +L +++ F ++
Sbjct: 39 RAKSILRSEFDPDRALEIYSSVSKHYTS----PLAS-RYA---QDLTVKRLAKSRRFADI 90
Query: 71 QQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLN 130
+ ++ K+D + I +E +I YG A + +HAL+ F++M R+ S N LL+
Sbjct: 91 ETLIESHKNDPK-ITQEPYLSTLIRSYGIAGMFQHALRTFNQMEELGTPRSSISFNALLS 149
Query: 131 ALLTCGKLDRMKELF 145
A D++ + F
Sbjct: 150 ACNQSKLFDQVPKFF 164
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 61/115 (53%), Gaps = 2/115 (1%)
Query: 52 LHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFD 111
+ ++ +++ ++K+FD++ + ++ V+P++I + ++ Y + L + A+ +
Sbjct: 142 ISFNALLSACNQSKLFDQVPKFFEEIPRRYGVLPDKISYGILVKSYCESGLSDKAISMLK 201
Query: 112 EMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKII 166
EM V+ T + T+L+AL G+ DR ++++ K LD N+KI+
Sbjct: 202 EMEEKGVEITAVTFTTILDALYKQGQSDRAEKVWHEMAKK--GCLDVGAYNVKIM 254
>gi|147840633|emb|CAN68320.1| hypothetical protein VITISV_032192 [Vitis vinifera]
Length = 416
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 67/135 (49%), Gaps = 9/135 (6%)
Query: 11 RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEM 70
R S+L + P AL+++ + + + PL RY DL + +L +++ F ++
Sbjct: 41 RAKSILRSEFDPDRALEIYSSVSKHYTS----PLAS-RYAQ---DLTVKRLAKSRRFADI 92
Query: 71 QQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLN 130
+ ++ K+D + I +E +I YG A + +HAL+ F++M R+ S N LL+
Sbjct: 93 ETLIESHKNDPK-ITQEPYLSTLIRSYGIAGMFQHALRTFNQMEELGTPRSSISFNALLS 151
Query: 131 ALLTCGKLDRMKELF 145
A D++ + F
Sbjct: 152 ACNQSKLFDQVPKFF 166
>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
sativus]
Length = 686
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 2/132 (1%)
Query: 23 KLALQLFKNPNPNANDTEAP-PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT 81
K AL++FK + D +A P ++ Y+++I L F E +++ ++ H
Sbjct: 480 KDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRG 539
Query: 82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRM 141
++P+ I + ++I + L+ A Q+FD M S + V + NTL+ G +D
Sbjct: 540 -IVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDG 598
Query: 142 KELFISFNLKAI 153
ELF + I
Sbjct: 599 LELFCEMGQRGI 610
Score = 39.3 bits (90), Expect = 0.63, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARL 102
P K +++ ++ +I RAK D+ ++LH++ + ++ I + +I + +
Sbjct: 385 PTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMT-EAGLVANTITYTTLIHGFCQVGD 443
Query: 103 LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
L A + EM S V V + NTLL+ L GKL E+F
Sbjct: 444 LNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMF 486
>gi|356517665|ref|XP_003527507.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Glycine max]
Length = 564
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ + ++I+ L + + +E Q LKH R P+ +++ +++ + RA + A +V
Sbjct: 247 DMVAFSIVISSLCKKRRANEAQSFFDSLKH--RFEPDVVVYTSLVHGWCRAGDISKAEEV 304
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F +M ++ V + + ++++L CG++ R ++F
Sbjct: 305 FSDMKMAGIKPNVYTYSIVIDSLCRCGQITRAHDVF 340
>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 652
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 9/120 (7%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I + K FDE + ++ H +IP+ + + ++I ++ + +ALQ+ D+M
Sbjct: 368 YSIMINGFCKIKKFDEAMNLFKEM-HRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQM 426
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA--------VLDGLCSNLKI 165
V T+++ N++L+AL ++D+ L K I ++ GLC + K+
Sbjct: 427 HDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKL 486
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 9/119 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ II + + K+ +E + ++ + P+ + + +IS + L A+ +
Sbjct: 224 NVVMYNTIIDSMCKVKLVNEAFDLFSEMI-SKGISPDVVTYSALISGFCILGKLNDAIDL 282
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLC 160
F++M N++ V + N L+NA GK+ K +F + I +++DG C
Sbjct: 283 FNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYC 341
>gi|326493766|dbj|BAJ85345.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 671
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 63/126 (50%), Gaps = 9/126 (7%)
Query: 40 EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR 99
++ P KP ++ Y+ ++ L RA +++ +++ + P EI F +I+ +
Sbjct: 510 QSMPCKP---DIFGYNAVLKGLCRAARWEDAGELISNMARKD-CPPNEITFNILINSLCQ 565
Query: 100 ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAV---- 155
L++ A++VF++MP + + + N L+N G+LD + L + + K AV
Sbjct: 566 KGLVDRAIEVFEQMPKYGSTPDIFTYNALINGFSEQGRLDDARRLLSTMSCKPDAVSYNS 625
Query: 156 -LDGLC 160
L GLC
Sbjct: 626 ALKGLC 631
Score = 43.5 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 17/127 (13%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARL 102
P+ P Y Y+ ++ L A+ +++ + ++ ++ + P E+ F I + + L
Sbjct: 207 PVAPDTYT---YNTVLMGLCGARQWEDAEALMAEMVRN-HCPPNEVTFATQIRAFCQNGL 262
Query: 103 LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF---------ISFNLKAI 153
L+ A+Q+ D MP + V +TL+N G++D EL I +N
Sbjct: 263 LDRAVQLLDRMPQYGCTPDVVIYSTLVNGFSEQGRVDDAIELLNGMLCKPNTICYN---- 318
Query: 154 AVLDGLC 160
A L GLC
Sbjct: 319 AALKGLC 325
Score = 43.1 bits (100), Expect = 0.040, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 64/121 (52%), Gaps = 8/121 (6%)
Query: 46 PFRYNLLHYDLIITKLGRAKMFDEMQQILHQ-LKHDTRVIPEEIIFCNVISFYGRARLLE 104
P +++ ++ + L RA+ +D+ ++++ Q L+ D +I E+ F +I + +
Sbjct: 411 PCSPDVISFNAALKGLCRAERWDDAEELIVQMLREDCPLI--EMTFNILIDSLCQNGRVN 468
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI-----AVLDGL 159
+A++VF++MP + + + ++L+N L G ++ ELF S K AVL GL
Sbjct: 469 NAIEVFEQMPKYGCTPDIVTYSSLINGLSEQGLVESAIELFQSMPCKPDIFGYNAVLKGL 528
Query: 160 C 160
C
Sbjct: 529 C 529
>gi|449533905|ref|XP_004173911.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g59040-like, partial [Cucumis sativus]
Length = 299
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 64 AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVK 123
+K++D+MQ+ Q P+ + + +IS YG+AR E AL VF+EM ++ T K
Sbjct: 17 SKIYDQMQRAGLQ--------PDVVSYALLISAYGKARREEEALAVFEEMLDAGIRPTHK 68
Query: 124 SLNTLLNALLTCGKLDRMKELFIS 147
+ N LL+A G +++ K +F S
Sbjct: 69 AYNILLDAFAISGMVEQAKIVFKS 92
>gi|357142780|ref|XP_003572691.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
mitochondrial-like [Brachypodium distachyon]
Length = 501
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +I+T L + MF+E + H++K + P+ + + ++I+ G+A L A QV
Sbjct: 289 NVITYTMIMTSLAKCHMFEEALSVSHRMK-SSGCKPDTLFYNSLINLLGKAGHLSEASQV 347
Query: 110 FD-EMPSFNVQRTVKSLNTLLN 130
F EMP V R++ + NT+++
Sbjct: 348 FQVEMPMNGVPRSLATYNTMIS 369
>gi|357140623|ref|XP_003571864.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37230-like [Brachypodium distachyon]
Length = 751
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 47/91 (51%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
FR + L+I L +M + + IL + V P+E +++ YG+AR+ + A
Sbjct: 136 FRPEPATFSLLIPVLASNRMLNHARCILLETMPAFSVSPDEATVAALVAAYGKARIPQEA 195
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGK 137
+++F MP + RT S N +L A+L G+
Sbjct: 196 VKLFRLMPELGITRTALSYNAVLKAILCRGR 226
Score = 40.8 bits (94), Expect = 0.23, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+L Y+ +I G ++ + ++ +K V P+ + N+I+ + R LE A +V
Sbjct: 245 DLSTYNTLIWGFGLSEKMEAAVRVFGDMKGHG-VTPDVTTYNNLINAWVRNGDLESARKV 303
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLCS 161
FDEMP +R S N ++ + K++ LF K + A++ GLC
Sbjct: 304 FDEMPGAGFERNSVSYNVMIKGYVEAKKVEEAVGLFKEMGEKGLRSSEKTFAALMPGLCD 363
Query: 162 N 162
+
Sbjct: 364 D 364
>gi|297812025|ref|XP_002873896.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319733|gb|EFH50155.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 507
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 75/145 (51%), Gaps = 11/145 (7%)
Query: 3 KAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLG 62
K K S SL+ ++ P+ AL +F +A K F +N Y +++ L
Sbjct: 51 KTKFISHESTVSLMKRERDPQRALDIF---------NKASQQKGFNHNNATYSVLLDNLV 101
Query: 63 RAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSF-NVQRT 121
R K F + ILHQ+K++T +E +F N++ + R L + +++F+ + V+ +
Sbjct: 102 RHKKFLAVDAILHQMKYETCRF-QESLFLNLMRHFSRFDLHDKVMEMFNLIQVIARVKPS 160
Query: 122 VKSLNTLLNALLTCGKLDRMKELFI 146
+ +++T LN L+ G++D ++L +
Sbjct: 161 LNAISTCLNLLIDSGEVDLARKLLL 185
>gi|302755642|ref|XP_002961245.1| hypothetical protein SELMODRAFT_70140 [Selaginella moellendorffii]
gi|300172184|gb|EFJ38784.1| hypothetical protein SELMODRAFT_70140 [Selaginella moellendorffii]
Length = 489
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/138 (20%), Positives = 71/138 (51%), Gaps = 10/138 (7%)
Query: 10 FRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDE 69
+++ +L + ++AL+ F T A + F+++ ++Y ++I LG + +
Sbjct: 1 YQVCEVLKRVRDWRVALEFF---------TWAKSVPFFKHDAMNYSMMIRVLGTCGNYTQ 51
Query: 70 MQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL 129
+++ +++ + + P+ + N+I YG A ++ A+ +F E P F + V + L+
Sbjct: 52 GRKLFDEMR-EKGLKPDLVTVNNMIKCYGSANRMDDAMDLFREFPDFGFEPDVCTYALLI 110
Query: 130 NALLTCGKLDRMKELFIS 147
+ L G++ +++LF+
Sbjct: 111 DLLGKAGRVSEVRKLFLE 128
>gi|359487410|ref|XP_002273156.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g53170-like [Vitis vinifera]
Length = 538
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVF 110
++ ++++I GR ++M++ ++KH V P I +C+++S Y +A L+ +
Sbjct: 340 IVTFNIVIEMFGRVGNIEKMEEFFLKMKHQG-VKPNSITYCSLVSAYSKAGYLKKVDSIL 398
Query: 111 DEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFI 146
++ + +V N +L+A G ++RM ELF+
Sbjct: 399 RQIENSDVTLDTPFFNCVLSAYGQAGDVERMGELFL 434
Score = 37.0 bits (84), Expect = 3.1, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 38/78 (48%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ II G+A MF+ M+ L ++ +P+ + I YG + +E + +DE
Sbjct: 237 YNTIIDGYGKADMFELMESSLTEMIESGTCLPDIFTLNSFIWAYGNSGQIEKMEKWYDEF 296
Query: 114 PSFNVQRTVKSLNTLLNA 131
++ +K+ N L+ +
Sbjct: 297 QLMGIRPDIKTFNILIRS 314
>gi|224065693|ref|XP_002301924.1| predicted protein [Populus trichocarpa]
gi|222843650|gb|EEE81197.1| predicted protein [Populus trichocarpa]
Length = 709
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 72 QILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA 131
Q+L +++ D+ V P+ I + +I +G+ L+HA+ FD M S ++ + NTL++
Sbjct: 432 QVLREME-DSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPDTITWNTLVDC 490
Query: 132 LLTCGKLDRMKELF 145
GK DR +ELF
Sbjct: 491 HCKAGKHDRAEELF 504
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/94 (20%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
++++I G + +D+++ +L ++ ++P + + +I YG++ + A++ D+M
Sbjct: 519 FNIMINSFGDQERWDDVKNLLTNMRSQG-LLPNAVTYTTLIDIYGKSGRFDDAIECLDDM 577
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFIS 147
+ ++ + N LLNA G D+ F +
Sbjct: 578 KAAGLKPSSTMYNALLNAYAQRGLSDQAVSAFWA 611
>gi|334185941|ref|NP_190885.5| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
gi|332645523|gb|AEE79044.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
Length = 499
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F + Y+++I G+A ++M + ++K+ V P I +C++++ Y +A L+
Sbjct: 352 FSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQG-VKPNSITYCSLVNAYSKAGLVVKI 410
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFI 146
V ++ + +V N ++NA G L MKEL+I
Sbjct: 411 DSVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYI 450
Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 40/90 (44%)
Query: 52 LHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFD 111
+ Y+ II G+A MF+EM+ +L + D +P+ ++I YG R + +
Sbjct: 251 VTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYS 310
Query: 112 EMPSFNVQRTVKSLNTLLNALLTCGKLDRM 141
VQ + + N L+ + G +M
Sbjct: 311 RFQLMGVQPDITTFNILILSFGKAGMYKKM 340
>gi|302784776|ref|XP_002974160.1| hypothetical protein SELMODRAFT_100785 [Selaginella moellendorffii]
gi|300158492|gb|EFJ25115.1| hypothetical protein SELMODRAFT_100785 [Selaginella moellendorffii]
Length = 220
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+L + + LG A D + + DT + + + ++S YGRA L+ A Q+
Sbjct: 119 DLATWTACVASLGEAGSIDAAKAMF-----DTMPAWDLVTWNAMVSAYGRAGLVRPAGQL 173
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
FD MP + ++ N +L+AL CG L+ +EL
Sbjct: 174 FDSMP----EHSLVCANAMLSALCQCGHLEEARELL 205
>gi|224068054|ref|XP_002302657.1| predicted protein [Populus trichocarpa]
gi|222844383|gb|EEE81930.1| predicted protein [Populus trichocarpa]
Length = 602
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 48/99 (48%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
+R+ +Y +I L + K F + +L +++ D V+ +F V+ + +R++ A
Sbjct: 111 YRHCYENYKAMIKVLSKMKQFGAVWALLEEMRRDNSVLITSEVFVVVMRRFASSRMVNKA 170
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
++V DEMP + + LL+AL G + LF
Sbjct: 171 IEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLF 209
>gi|326522967|dbj|BAJ88529.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 539
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 63/126 (50%), Gaps = 9/126 (7%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
K R +++ ++++I GR + FD+M+Q+ L ++ P F ++I+ YG+ARL E
Sbjct: 261 KQCRPDVITFNILIDSYGRKQTFDKMEQVFKSLLR-SKERPTHPTFNSMITNYGKARLRE 319
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF-------ISFNLKAI-AVL 156
A V ++M + + L+N C + + +++F + L ++ A+L
Sbjct: 320 KAESVIEKMQELGFKPNYVTQECLINMYAYCDCVSKAQQIFDELVSSQSTVPLSSLNAML 379
Query: 157 DGLCSN 162
D C N
Sbjct: 380 DAYCMN 385
>gi|71406138|ref|XP_805630.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70869115|gb|EAN83779.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 243
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 58/102 (56%), Gaps = 5/102 (4%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP-EEIIFCNVISFYGRARLL 103
K + N + ++++ GRA+ F+ M++I+ Q K + IP +++I+C + + YGRARL
Sbjct: 15 KGYTNNAVTHNILADGYGRARRFERMEEIVQQRK--SSGIPMDDLIYCIMATSYGRARLK 72
Query: 104 EHALQVFDEMPSFNVQR--TVKSLNTLLNALLTCGKLDRMKE 143
+ +++ E+ S + T K + + ++A C D M++
Sbjct: 73 KEVHRLYTEVTSPTSRHLFTRKVIWSFIDAFCRCAAPDDMEK 114
>gi|297741611|emb|CBI32743.3| unnamed protein product [Vitis vinifera]
Length = 772
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 10/134 (7%)
Query: 12 LASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQ 71
+ ++LH ++ ALQ F+ E L FR++ + II LGRA + +
Sbjct: 122 VWNVLHGSRNSDHALQFFRW-------VERAGL--FRHDRDTHLKIIEILGRASKLNHAR 172
Query: 72 QILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA 131
IL + V +E +F +I YG+A +++ +++VF +M V+RT+KS + L
Sbjct: 173 CILLDMPKKG-VEWDEDLFVLLIDSYGKAGIVQESVKVFQKMKELGVERTIKSYDALFKV 231
Query: 132 LLTCGKLDRMKELF 145
+L G+ K F
Sbjct: 232 ILRRGRYMMAKRYF 245
>gi|357148528|ref|XP_003574800.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
mitochondrial-like [Brachypodium distachyon]
Length = 464
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 90 FCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN 149
F VIS YG +RL E A++VF+ +P F +T + N LL+AL + G +L
Sbjct: 155 FSAVISSYGHSRLPEQAVEVFNRLPHFGCPQTTEVYNALLDALCSNGNFAGAYKLLRRMA 214
Query: 150 LKAIA--------VLDGLCSNLKI 165
K +A ++D C++ K+
Sbjct: 215 RKGVAPDRATFSTLVDAWCASGKL 238
>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
Length = 479
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 2/133 (1%)
Query: 23 KLALQLFKNPNPNANDTEAP-PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT 81
K AL++FK + D +A ++ Y+++I+ L F E +++ ++ H
Sbjct: 274 KDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPH-R 332
Query: 82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRM 141
++P+ + + ++I+ + L+ A Q+FD M S + + + NTL+ G +D
Sbjct: 333 GIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDG 392
Query: 142 KELFISFNLKAIA 154
ELF + I
Sbjct: 393 LELFCEMGRRGIV 405
>gi|225440005|ref|XP_002276355.1| PREDICTED: pentatricopeptide repeat-containing protein At2g37230
[Vitis vinifera]
Length = 763
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 10/134 (7%)
Query: 12 LASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQ 71
+ ++LH ++ ALQ F+ E L FR++ + II LGRA + +
Sbjct: 122 VWNVLHGSRNSDHALQFFRW-------VERAGL--FRHDRDTHLKIIEILGRASKLNHAR 172
Query: 72 QILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA 131
IL + V +E +F +I YG+A +++ +++VF +M V+RT+KS + L
Sbjct: 173 CILLDMPKKG-VEWDEDLFVLLIDSYGKAGIVQESVKVFQKMKELGVERTIKSYDALFKV 231
Query: 132 LLTCGKLDRMKELF 145
+L G+ K F
Sbjct: 232 ILRRGRYMMAKRYF 245
>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
Length = 479
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 2/133 (1%)
Query: 23 KLALQLFKNPNPNANDTEAP-PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT 81
K AL++FK + D +A ++ Y+++I+ L F E +++ ++ H
Sbjct: 274 KDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPH-R 332
Query: 82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRM 141
++P+ + + ++I+ + L+ A Q+FD M S + + + NTL+ G +D
Sbjct: 333 GIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDG 392
Query: 142 KELFISFNLKAIA 154
ELF + I
Sbjct: 393 LELFCEMGRRGIV 405
>gi|357438845|ref|XP_003589699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478747|gb|AES59950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 806
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 10/129 (7%)
Query: 6 PTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAK 65
P S + +L + +L+ FK+ + + F++ L Y+ +I KLGR
Sbjct: 38 PVSESHVVKVLRQEHDIVSSLEYFKSLSNSG---------TFKHTHLTYETMIDKLGRNN 88
Query: 66 MFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSL 125
D + +L Q+K + +E +F VI Y R+ L E L++F + F + +VK
Sbjct: 89 EMDGVSYLLQQMKLENVPCSQE-LFQFVIKCYRRSNLGEQGLKMFYRIREFGCEPSVKIY 147
Query: 126 NTLLNALLT 134
N +L+ALL+
Sbjct: 148 NLVLDALLS 156
>gi|255538538|ref|XP_002510334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551035|gb|EEF52521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 947
Score = 48.9 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 9/121 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N + Y++ I L ++ D+ ++I L P+ +C +I Y A + A +
Sbjct: 708 NSVVYNIAIAGLCKSGKVDDAKKIFSSLLLRG-FSPDNFTYCTLIHGYSAAGNVNDAFSL 766
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA--------VLDGLCS 161
DEM + + + N L+N L G LDR ++LF +LK +A ++DG C
Sbjct: 767 RDEMLKRGLAPNIITYNALINGLCKSGNLDRAQKLFDKLHLKGLAPNVISYNILIDGYCK 826
Query: 162 N 162
N
Sbjct: 827 N 827
Score = 43.9 bits (102), Expect = 0.028, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 67/141 (47%), Gaps = 27/141 (19%)
Query: 15 LLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 74
LL L+ +P +L FK + +N FR N+ + ++ L RA+M+DE + L
Sbjct: 67 LLKLKFNPIASLHFFKLASKQSN---------FRPNVNSHCKLVHILSRARMYDETRSYL 117
Query: 75 HQL------KHDTRVIPEEI------------IFCNVISFYGRARLLEHALQVFDEMPSF 116
++L + + V+ E+ +F ++ Y ++++AL VFD M
Sbjct: 118 NELVTPSKNNYSSLVVWNELVRVFEDFKFSPTVFDMILKIYCEKGMIKNALHVFDNMGKL 177
Query: 117 NVQRTVKSLNTLLNALLTCGK 137
+++S N LL++L+ G+
Sbjct: 178 GCVPSLRSCNRLLSSLVRKGE 198
>gi|326513918|dbj|BAJ92109.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 459
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query: 90 FCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN 149
F VIS YG +RL E A++VF+ +P F +T + N LL+AL G +L
Sbjct: 150 FSAVISSYGHSRLAEQAVEVFNRLPHFGCPQTTEVYNALLDALCANGNFAGAYKLLRRMA 209
Query: 150 LKAIA--------VLDGLCSNLKI 165
K +A ++D C++ K+
Sbjct: 210 RKGVAPDRATFSTLVDAWCASGKL 233
>gi|75265624|sp|Q9SCP4.1|PP279_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g53170
gi|6630737|emb|CAB64220.1| nodulin / glutamate-ammonia ligase-like protein [Arabidopsis
thaliana]
Length = 447
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F + Y+++I G+A ++M + ++K+ V P I +C++++ Y +A L+
Sbjct: 302 FSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQG-VKPNSITYCSLVNAYSKAGLVVKI 360
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFI 146
V ++ + +V N ++NA G L MKEL+I
Sbjct: 361 DSVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYI 400
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 40/90 (44%)
Query: 52 LHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFD 111
+ Y+ II G+A MF+EM+ +L + D +P+ ++I YG R + +
Sbjct: 201 VTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYS 260
Query: 112 EMPSFNVQRTVKSLNTLLNALLTCGKLDRM 141
VQ + + N L+ + G +M
Sbjct: 261 RFQLMGVQPDITTFNILILSFGKAGMYKKM 290
>gi|449468996|ref|XP_004152207.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80150,
mitochondrial-like [Cucumis sativus]
gi|449484169|ref|XP_004156805.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80150,
mitochondrial-like [Cucumis sativus]
Length = 399
Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE---EIIFCNVISFYGRARLLEHA 106
N ++ +++L A+ FD ++ H L+H + +P+ E +I YG+A +++HA
Sbjct: 69 NRFAFEDTVSRLAGARRFDYIE---HLLEHQ-KTLPQGRREGFIIRIIMLYGKAEMIKHA 124
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFIS 147
L F +M + RTVKS N +L L+ L + E F+S
Sbjct: 125 LDTFYDMHLYGCLRTVKSFNAVLKVLMKSRDLGAL-EAFLS 164
>gi|115453133|ref|NP_001050167.1| Os03g0363700 [Oryza sativa Japonica Group]
gi|108708311|gb|ABF96106.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|113548638|dbj|BAF12081.1| Os03g0363700 [Oryza sativa Japonica Group]
Length = 564
Score = 48.9 bits (115), Expect = 9e-04, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLL 103
L+ + + + Y I L + DE +QI +++ D + P E +C+++++Y +A
Sbjct: 283 LRGYNVDAVTYTTAIDGLCKMGCIDEARQIWNEMV-DKGMEPNEYAYCSLVAYYCKAGDF 341
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA--------V 155
E A +V+DEM ++ + S N L+ T G++D +F K I +
Sbjct: 342 EMARKVYDEMLGKGLKESTVSCNILVTGFCTHGRVDEALGMFEEMVKKGIEHDVITYNIL 401
Query: 156 LDGLC 160
+ GLC
Sbjct: 402 IQGLC 406
>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
Length = 816
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y ++ L +A+ D+ + L Q+ + V+P+ + N+I Y + A++V
Sbjct: 255 DLVTYSSVVHALCKARAMDKAEAFLRQMVNKG-VLPDNWTYNNLIYGYSSTGQWKEAVRV 313
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA 152
F EM ++ V +LNTL+ +L GK+ +++F + +K
Sbjct: 314 FKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKG 356
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 9/120 (7%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
R +++ + II L + + Q I L + + P+ +++ ++ Y +E AL
Sbjct: 498 RLDIVFFGSIINNLCKLGRVMDAQNIF-DLTVNVGLHPDAVVYNMLMDGYCLVGKMEKAL 556
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA--------VLDGL 159
+VFD M S ++ V TL+N G++D LF K I ++DGL
Sbjct: 557 RVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGL 616
>gi|224104097|ref|XP_002313317.1| predicted protein [Populus trichocarpa]
gi|222849725|gb|EEE87272.1| predicted protein [Populus trichocarpa]
Length = 474
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 47/95 (49%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+ + Y+ II G+AKMF+EM+ L + +P+ F ++I YG ++ +
Sbjct: 220 STVTYNTIIDGYGKAKMFEEMENTLTDMIESGSSVPDLFTFNSIIGAYGSKGRIDKMEKW 279
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
+ E +++ +K+ N L+ + G +M+ +
Sbjct: 280 YTEFQLMGLRQDIKTFNILIRSYGKAGMYGKMRSV 314
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/101 (19%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F +++ +++ I G+A + M++ ++KH + P + +C+++S Y +A +
Sbjct: 323 FSPSIVTHNIFIETFGKAGDIETMEEYFSKMKH-LGIKPNTVTYCSLVSAYSKAGHIMKV 381
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFIS 147
+ ++ + +V N +++A G +++M ELF+
Sbjct: 382 DSILRQVENSDVILDTPFFNCVISAYGRAGDIEKMSELFLG 422
>gi|125541147|gb|EAY87542.1| hypothetical protein OsI_08951 [Oryza sativa Indica Group]
Length = 482
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 9/123 (7%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
R +++ ++++I GR + FD+M+Q+ L ++ P F ++I+ YG+ARL E A
Sbjct: 250 RPDVITFNILIDSYGRKQAFDKMEQVFKSLLR-SKEKPTHPTFNSMITNYGKARLREKAE 308
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF-------NLKAI-AVLDGL 159
V D+M + + L+ C + R +++F +L ++ A+LD
Sbjct: 309 CVLDKMTEMGFKPNYVTQECLIMMYAYCDCVSRARQIFDELVSSQNNVHLSSVNAMLDAY 368
Query: 160 CSN 162
C N
Sbjct: 369 CMN 371
>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
Length = 816
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y ++ L +A+ D+ + L Q+ + V+P+ + N+I Y + A++V
Sbjct: 255 DLVTYSSVVHALCKARAMDKAEAFLRQMVNKG-VLPDNWTYNNLIYGYSSTGQWKEAVRV 313
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA 152
F EM ++ V +LNTL+ +L GK+ +++F + +K
Sbjct: 314 FKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKG 356
Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 9/120 (7%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
R +++ + II L + + Q I L + + P+ +++ ++ Y +E AL
Sbjct: 498 RLDIVFFGSIINNLCKLGRVMDAQNIF-DLTVNVGLHPDAVVYNMLMDGYCLVGKMEKAL 556
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA--------VLDGL 159
+VFD M S ++ V TL+N G++D LF K I ++DGL
Sbjct: 557 RVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGL 616
>gi|125583699|gb|EAZ24630.1| hypothetical protein OsJ_08397 [Oryza sativa Japonica Group]
Length = 482
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 9/123 (7%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
R +++ ++++I GR + FD+M+Q+ L ++ P F ++I+ YG+ARL E A
Sbjct: 250 RPDVITFNILIDSYGRKQAFDKMEQVFKSLLR-SKEKPTHPTFNSMITNYGKARLREKAE 308
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF-------NLKAI-AVLDGL 159
V D+M + + L+ C + R +++F +L ++ A+LD
Sbjct: 309 CVLDKMTEMGFKPNYVTQECLIMMYAYCDCVSRARQIFDELVSSQNNVHLSSVNAMLDAY 368
Query: 160 CSN 162
C N
Sbjct: 369 CMN 371
>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
Length = 724
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 66/128 (51%), Gaps = 11/128 (8%)
Query: 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMF 67
+PF+L LL L + ++++FK A K + ++ Y L+I KLG A F
Sbjct: 70 TPFQLCKLLELPLDVETSMEIFK---------WAGAQKGYCHSFSVYYLLIDKLGAAAGF 120
Query: 68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPS-FNVQRTVKSLN 126
+ ++L Q+K + ++ E +F ++ +YGRA L A ++ +M + + + +S N
Sbjct: 121 KVIDRLLLQMKEEG-IVFRESLFILIMKYYGRAGLPGQATRLLLDMKGVYCCEPSFRSYN 179
Query: 127 TLLNALLT 134
+L+ L+
Sbjct: 180 VVLDVLVV 187
>gi|449451631|ref|XP_004143565.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
chloroplastic-like [Cucumis sativus]
Length = 528
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ ++L+I G+ ++FD+M+Q+ L ++ P F ++I+ YG+ARL E A +V
Sbjct: 271 DIISFNLLIDSYGKKQLFDKMEQVFKSLLR-SKERPTLPTFNSMITNYGKARLREKAEEV 329
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F +M + + +L+ C + + +E+F
Sbjct: 330 FRKMKDMGYDPSYVTCESLIMMYGHCDCVSKAREIF 365
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
R L ++ +IT G+A++ ++ +++ ++K D P + ++I YG + A
Sbjct: 304 RPTLPTFNSMITNYGKARLREKAEEVFRKMK-DMGYDPSYVTCESLIMMYGHCDCVSKAR 362
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCG 136
++FD M + + V +LN +L+ G
Sbjct: 363 EIFDGMVNSGKEVRVSTLNAMLDVYCING 391
>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
Length = 1627
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 10/122 (8%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
R ++ Y +I LG+A DE +++ + P+ + N+I+F G+A L+ A+
Sbjct: 1287 RPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREG-CRPDTVFMNNMINFLGKAGRLDDAM 1345
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCGK--------LDRMKELFISFNLKAIAVL-DG 158
++F EM + +V + NT++ AL +RMKE IS + ++L DG
Sbjct: 1346 KLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDG 1405
Query: 159 LC 160
C
Sbjct: 1406 FC 1407
Score = 40.8 bits (94), Expect = 0.23, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I LG+AK +D ++ +LK + + + +I G+A L+ A+ +FDEM
Sbjct: 1434 YCSLIDALGKAKRYDLACELFQELKENCGSSSARV-YAVMIKHLGKAGRLDDAINMFDEM 1492
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLD-------RMKE 143
V + N L++ L G LD RM+E
Sbjct: 1493 NKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQE 1529
>gi|242064536|ref|XP_002453557.1| hypothetical protein SORBIDRAFT_04g008050 [Sorghum bicolor]
gi|241933388|gb|EES06533.1| hypothetical protein SORBIDRAFT_04g008050 [Sorghum bicolor]
Length = 390
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARL 102
P K ++ Y++I + LG+ K M + ++K + V P+ + +IS +GR L
Sbjct: 174 PEKGITTDVGMYNIIFSALGKLKQVSFMSSLYDKMKANG-VAPDVFTYNIMISSFGRVGL 232
Query: 103 LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
++ A ++F+EM + + V + N+++N L G LD LF
Sbjct: 233 VDKASELFEEMDDSSCKPDVITYNSMINCLGKNGDLDEAHMLF 275
>gi|147801213|emb|CAN73209.1| hypothetical protein VITISV_002838 [Vitis vinifera]
Length = 1024
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 3/125 (2%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLL 103
LKP N + Y+ +I L A+ D++++IL + D IP+ +I + L
Sbjct: 410 LKP---NKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKL 466
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNL 163
E A VF++M VQ + + L+ +L G R +E F K I + D C L
Sbjct: 467 EEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPL 526
Query: 164 KIIMN 168
N
Sbjct: 527 VAAYN 531
>gi|357140426|ref|XP_003571769.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Brachypodium distachyon]
Length = 637
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARL 102
P K ++ Y+++ + LG+ K + + ++K + + P+ + +IS YGR L
Sbjct: 420 PEKGIDTDIGMYNMVFSALGKLKQVSFISTLFDKMKA-SGIAPDLFTYNIMISSYGRVGL 478
Query: 103 LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
++ A +F+EM + + + V + NTL+N L G LD LF
Sbjct: 479 VDKASGLFEEMEASSCKPDVITYNTLINCLGKNGDLDEAHILF 521
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
K ++ ++ Y++++ L +A M D+ Q+ +K +P+ + +I G+
Sbjct: 215 KGYKLDIFAYNMLLDALAKAGMVDQAYQVFEDMKQKY-CVPDAYTYTILIRMSGKTGQTY 273
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNAL 132
L FDEM S + + NT++ AL
Sbjct: 274 KFLSFFDEMVSRGCALNLIAYNTVIEAL 301
>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
Length = 611
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 12/125 (9%)
Query: 47 FRYNLLHYDLII---TKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLL 103
F N++ Y+ +I K+GR + IL ++ + +V P + F +I + + L
Sbjct: 261 FWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVEN-KVSPNSVTFNVLIDGFCKDENL 319
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF---ISFNLK-----AIAV 155
AL+VF+EM S ++ TV + N+L+N L GKL+ K L +S NLK A+
Sbjct: 320 SAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNAL 379
Query: 156 LDGLC 160
++G C
Sbjct: 380 INGYC 384
>gi|356561705|ref|XP_003549120.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 445
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 58 ITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFN 117
+ K G+ KM DE + ++KH +IP+ + + ++I + LE A+ + EM
Sbjct: 278 LGKEGKKKMVDEAMSLFEEMKHKN-MIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHG 336
Query: 118 VQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLC 160
+Q V S LL+ L G+L+ KE F +K +++GLC
Sbjct: 337 IQPDVYSYTILLDGLCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMINGLC 387
>gi|71748364|ref|XP_823237.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70832905|gb|EAN78409.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 458
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 9/117 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N+ HY +I+ GRA ++ I Q+ + V P + VI+ A + AL++
Sbjct: 219 NVFHYTTVISACGRAGKWEAAMSIFDQMTKN-EVKPNVYTYTAVINACASAEKADVALRM 277
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDR-------MKELFISFNL-KAIAVLDG 158
F M +V V+++ L+NA G+ +R +ELF++ N+ A +DG
Sbjct: 278 FAHMRLADVPPNVQTMTALVNACARSGEWERAIKILRDCEELFVAPNVFTYTAAMDG 334
>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
Length = 471
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 8/124 (6%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I L + E Q IL Q++ V+P+ + + VI+ ++ +L A ++
Sbjct: 266 DVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKL 325
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA--------VLDGLCS 161
D M V + T+++ L CG+L+ + L A ++ GLC
Sbjct: 326 LDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCK 385
Query: 162 NLKI 165
K+
Sbjct: 386 ARKV 389
Score = 40.0 bits (92), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y II L + +E + +L +K P + + +IS +AR ++ A +V
Sbjct: 337 DVVTYTTIIDGLCKCGRLEEAEYLLQGMKR-AGCAPNVVTYTTLISGLCKARKVDEAERV 395
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+EM + + + NT++N L G++ ++L
Sbjct: 396 MEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLV 431
>gi|326513966|dbj|BAJ92133.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 537
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 40 EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR 99
+A +PF + Y+ ++ R D++Q + D ++P+++ C++I GR
Sbjct: 235 QAARGQPFHLDKQVYNDVLGGWARFGRVDKLQHFWAMMLEDG-LVPDDVSHCHLIEALGR 293
Query: 100 ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDR 140
A E AL+VF++M T + N L+ ++ G LDR
Sbjct: 294 AGQAEEALRVFEKMVQEGYGPTTMAYNALVFNFISVGDLDR 334
>gi|156070774|gb|ABU45188.1| unknown [Capsicum frutescens]
Length = 373
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
Query: 16 LHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILH 75
L + P ALQ++ + +D PL RY + + +L ++ F + + L
Sbjct: 21 LKAEHDPDKALQIY----SSVSDRYISPLSS-RYAQ---EYTVKRLAKSHRFSDSENFLE 72
Query: 76 QLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTC 135
K+ ++ I +E ++I YG A + +HAL++ +M R+ S N LL+A +
Sbjct: 73 SHKNSSK-ITQEPFLSSIIRSYGVAGMFDHALKICHQMDHLGTPRSAISFNVLLSACVHS 131
Query: 136 GKLDRMKELF 145
DR+ +LF
Sbjct: 132 KLYDRVAQLF 141
>gi|357118743|ref|XP_003561109.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Brachypodium distachyon]
Length = 535
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 4/53 (7%)
Query: 93 VISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
++SFY ++RLL+ A +VFDEMP +R N LL+A CG +D ++LF
Sbjct: 130 LVSFYAKSRLLDEARRVFDEMP----RRDTAVYNALLSAYARCGLVDAAEKLF 178
>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
Length = 604
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 10/122 (8%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
R ++ Y +I LG+A DE +++ + P+ + N+I+F G+A L+ A+
Sbjct: 264 RPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREG-CRPDTVFMNNMINFLGKAGRLDDAM 322
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCGK--------LDRMKELFISFNLKAIAVL-DG 158
++F EM + +V + NT++ AL +RMKE IS + ++L DG
Sbjct: 323 KLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDG 382
Query: 159 LC 160
C
Sbjct: 383 FC 384
Score = 40.4 bits (93), Expect = 0.31, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I LG+AK +D ++ +LK + + + +I G+A L+ A+ +FDEM
Sbjct: 411 YCSLIDALGKAKRYDLACELFQELKENCGSSSARV-YAVMIKHLGKAGRLDDAINMFDEM 469
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLD-------RMKE 143
V + N L++ L G LD RM+E
Sbjct: 470 NKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQE 506
>gi|115445705|ref|NP_001046632.1| Os02g0304800 [Oryza sativa Japonica Group]
gi|113536163|dbj|BAF08546.1| Os02g0304800 [Oryza sativa Japonica Group]
Length = 617
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I R D+++ + D ++P+++ +C++I GRA E ALQVF++M
Sbjct: 252 YNEVIGGWARFGRVDKVEHFWETMLEDG-LVPDQVSYCHLIEALGRANRAEEALQVFEKM 310
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDR 140
T + N L+ ++ G DR
Sbjct: 311 VHEGYCPTTMAYNALIFNFISVGNFDR 337
>gi|296089633|emb|CBI39452.3| unnamed protein product [Vitis vinifera]
Length = 718
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 3/125 (2%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLL 103
LKP N + Y+ +I L A+ D++++IL + D IP+ +I + L
Sbjct: 339 LKP---NKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKL 395
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNL 163
E A VF++M VQ + + L+ +L G R +E F K I + D C L
Sbjct: 396 EEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPL 455
Query: 164 KIIMN 168
N
Sbjct: 456 VAAYN 460
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 26 LQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQL--KHDTRV 83
LQL + P + K F +N Y L+I LGR++ + + + + K V
Sbjct: 102 LQLIRTPAKALHFFRWVEAKGFTHNEQSYFLMIEILGRSRNLNAARNFVFSIEKKSGGAV 161
Query: 84 IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKE 143
+ F ++I YG A L + +++VF M V +V + N+LL+ +L G+ K+
Sbjct: 162 KLGDRFFNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQ 221
Query: 144 LF 145
LF
Sbjct: 222 LF 223
>gi|302772122|ref|XP_002969479.1| hypothetical protein SELMODRAFT_61155 [Selaginella moellendorffii]
gi|300162955|gb|EFJ29567.1| hypothetical protein SELMODRAFT_61155 [Selaginella moellendorffii]
Length = 489
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/138 (20%), Positives = 71/138 (51%), Gaps = 10/138 (7%)
Query: 10 FRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDE 69
+++ +L + ++AL+ F T A + F+++ ++Y ++I LG + +
Sbjct: 1 YQVCEVLKRVRDWRVALEFF---------TWAKSVPFFKHDAMNYSMMIRVLGTCGNYTQ 51
Query: 70 MQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL 129
+++ +++ + + P+ + N+I YG A ++ A+ +F E P F + V + L+
Sbjct: 52 GRKLFDEMR-EKGLKPDLVTVNNMIKCYGCANRVDDAMDLFREFPDFGFEPDVCTYALLI 110
Query: 130 NALLTCGKLDRMKELFIS 147
+ L G++ +++LF+
Sbjct: 111 DLLGKAGRVSEVRKLFLE 128
>gi|297820044|ref|XP_002877905.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323743|gb|EFH54164.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 439
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F + Y+++I G+A ++M + ++K+ V P I +C++++ Y +A L+
Sbjct: 291 FSLTTVTYNIVIETFGKAGKIEKMDDVFRKMKYQG-VKPNSISYCSLVNAYSKAGLVGKI 349
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFI 146
+ ++ + +V N ++NA G L MKEL+I
Sbjct: 350 DSILRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYI 389
>gi|225433712|ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Vitis vinifera]
Length = 746
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 3/125 (2%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLL 103
LKP N + Y+ +I L A+ D++++IL + D IP+ +I + L
Sbjct: 339 LKP---NKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKL 395
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNL 163
E A VF++M VQ + + L+ +L G R +E F K I + D C L
Sbjct: 396 EEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPL 455
Query: 164 KIIMN 168
N
Sbjct: 456 VAAYN 460
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 26 LQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQL--KHDTRV 83
LQL + P + K F +N Y L+I LGR++ + + + + K V
Sbjct: 102 LQLIRTPAKALHFFRWVEAKGFTHNEQSYFLMIEILGRSRNLNAARNFVFSIEKKSGGAV 161
Query: 84 IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKE 143
+ F ++I YG A L + +++VF M V +V + N+LL+ +L G+ K+
Sbjct: 162 KLGDRFFNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQ 221
Query: 144 LF 145
LF
Sbjct: 222 LF 223
>gi|356495784|ref|XP_003516753.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial-like [Glycine max]
Length = 558
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 41 APPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRA 100
A L +R++ Y+L++ LG+ + FD M +++ ++ + E + V+ RA
Sbjct: 151 AKSLTGYRHSPELYNLMVDILGKCRSFDSMSELVEEMARLEGYVTLETM-TKVMRRLARA 209
Query: 101 RLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF 148
R E A++ F M F V++ +LN L++AL+ ++ ++ + F
Sbjct: 210 RKHEDAIEAFGRMEKFGVKKDTAALNVLIDALVKGDSVEHAHKVVLEF 257
Score = 36.2 bits (82), Expect = 5.8, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N + Y ++ LG+A + ++ ++K D + + + ++I G+A L+ A V
Sbjct: 334 NAVTYTSVMLHLGKAGQLRKALEVYEKMKSDG-CVADTPFYSSMIFILGKAGRLKDACDV 392
Query: 110 FDEMPSFNVQRTVKSLNTLLN 130
F++MP V R V + N++++
Sbjct: 393 FEDMPKQGVVRDVVTYNSMIS 413
>gi|357115900|ref|XP_003559723.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like, partial [Brachypodium distachyon]
Length = 907
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/125 (20%), Positives = 63/125 (50%), Gaps = 8/125 (6%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLL 103
+K N++ Y L++ + +E ++++ ++K + +++ +E+ + +I+ Y + +
Sbjct: 227 VKGLSPNVVTYTLLVKGYCKEGRMEEAEKVVKEIKENEKIVIDEVAYGALINGYCQRGRM 286
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AV 155
E A +V DEM VQ + NT++N G++ +++L + + + +
Sbjct: 287 EDANRVRDEMIDAGVQVNMFVYNTMINGYCKLGRMGEVEKLLQANEYRGVNLDEYSYNTL 346
Query: 156 LDGLC 160
+DG C
Sbjct: 347 VDGYC 351
Score = 36.2 bits (82), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 100 ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
A L+ AL VFDEM +RT++S N LLN L+ G + +F
Sbjct: 107 AGQLKDALYVFDEMGKAGSRRTLRSCNRLLNQLVQAGDIGTAVAVF 152
>gi|357115308|ref|XP_003559432.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial-like [Brachypodium distachyon]
Length = 570
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
R N++ Y +++ LG+A E + ++K D +P+ + ++I GRA LE A
Sbjct: 331 RPNVITYTIVMHALGKAGRTQEALDVFDKVKRDG-CVPDASFYNSIIYILGRAGRLEDAN 389
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNA 131
VFDEM + TV NT+++A
Sbjct: 390 SVFDEMCRTGIPPTVAIFNTMISA 413
Score = 36.2 bits (82), Expect = 4.6, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+L++ LG+ K FD + ++ Q+ + + V+ A A+ F++M
Sbjct: 163 YNLMVDILGKFKQFDLLWGLIRQMD-EIGCLVSLATMTKVMRRLAGANRWTDAIDAFNKM 221
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F V R K++N LL+ L + R + +F
Sbjct: 222 DQFGVVRDTKAMNALLDTLCKEKSVKRARGVF 253
>gi|255580313|ref|XP_002530985.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529437|gb|EEF31397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 753
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 67/132 (50%), Gaps = 10/132 (7%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
++LH ++ + ALQ F+ E L F+ + + II LGRA + + I
Sbjct: 114 NVLHAARNSEHALQFFRW-------VERAGL--FKNDRDTHMKIIEILGRASKLNHARCI 164
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L + V +E +F +I YG+A +++ A+++F++M V+R++KS + L +L
Sbjct: 165 LLDMPKKG-VEWDEYMFVVLIESYGKAGIVQEAVKIFNKMNELGVERSIKSYDALFKVIL 223
Query: 134 TCGKLDRMKELF 145
G+ K +F
Sbjct: 224 RRGRYMMAKRVF 235
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I R K +E +++ ++K + P I + +I Y ++ L++
Sbjct: 281 DVVTYNTMINGFYRFKKMEEAEKLFVEMK-GKNIAPTVISYTTMIKGYVAVDRVDDGLRL 339
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLD 157
+EM SFN++ V + +TLL L K+ K++ I + +A D
Sbjct: 340 LEEMKSFNIKPNVHTYSTLLPGLCDAWKMTEAKDILIEMVARHLAPKD 387
>gi|414591641|tpg|DAA42212.1| TPA: hypothetical protein ZEAMMB73_141452 [Zea mays]
Length = 472
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y+ ++ L +A+ D+ + L Q+ + RV+P + N+I Y + A++V
Sbjct: 219 DLVTYNSVVHALCKARAMDKAEAFLRQMVN-KRVLPNNWTYNNLIYGYSSTGQWKEAVRV 277
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA 152
F EM ++ V +L+ L+ +L GK+ +++F + +K
Sbjct: 278 FKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKG 320
>gi|225446761|ref|XP_002278350.1| PREDICTED: pentatricopeptide repeat-containing protein At3g59040
[Vitis vinifera]
gi|302143502|emb|CBI22063.3| unnamed protein product [Vitis vinifera]
Length = 548
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 8/84 (9%)
Query: 64 AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVK 123
+K +D+MQ+ + P+ + + +I+ YG+AR E AL VF+EM V+ T K
Sbjct: 300 SKTYDQMQR--------AGLRPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHK 351
Query: 124 SLNTLLNALLTCGKLDRMKELFIS 147
+ N LL+A G +D+ + +F S
Sbjct: 352 AYNILLDAFAISGMVDQARTVFKS 375
>gi|397566210|gb|EJK44959.1| hypothetical protein THAOC_36467 [Thalassiosira oceanica]
Length = 804
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 20/119 (16%)
Query: 48 RYNLLHYDLIITKLGRAK--MFDEMQQILHQLKHDTRV--------------IPEEIIFC 91
R N++ LI+ LG+ DE ++++++L+H T + I
Sbjct: 525 RPNVVTVALIVDGLGKCNPPRCDEARELVNRLEHSTLTQQHGQDLPNNWGISLKNNKIAA 584
Query: 92 NVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNL 150
+I YGRA E AL++F+ +PS ++ +LN++L+AL C KL R LF ++L
Sbjct: 585 ALIQAYGRANDAESALKLFERIPSPDLV----TLNSILDALCRCNKLKRALHLFKDYSL 639
>gi|297826975|ref|XP_002881370.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327209|gb|EFH57629.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 627
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 17/124 (13%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFC--NVISFYGRARLLEH 105
R N++ + +++ R+K + + ++ PE I +I Y ++ ++
Sbjct: 106 RKNVVTWTAMVSGYLRSKQLSVAETLFQEM-------PERNIVSWNTMIDGYAQSGRIDK 158
Query: 106 ALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI----AVLDGLCS 161
AL++FDEMP +R S NT++ AL+ G++D LF +K + A++DGL
Sbjct: 159 ALELFDEMP----ERNTVSWNTMIKALVQRGRIDEAMNLFERMPIKDVISWTAMVDGLAK 214
Query: 162 NLKI 165
N K+
Sbjct: 215 NGKV 218
>gi|224054488|ref|XP_002298285.1| predicted protein [Populus trichocarpa]
gi|222845543|gb|EEE83090.1| predicted protein [Populus trichocarpa]
Length = 575
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 64 AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVK 123
+K++D+MQ+ + + P+ + + +I YGRAR E AL VF+EM V+ + K
Sbjct: 276 SKIYDQMQR--------SGLRPDVVSYALLIKAYGRARREEEALAVFEEMLDAGVRPSHK 327
Query: 124 SLNTLLNALLTCGKLDRMKELFIS 147
+ N LL+A G +++ + +F S
Sbjct: 328 AYNILLDAFAISGMVEQARVVFKS 351
>gi|449518511|ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Cucumis sativus]
Length = 868
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
+ +++ Y+ ++ G+ F+E+ ++ ++K D RV P + + +I Y + L E A+
Sbjct: 430 KKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKD-RVFPNLLTYSTLIDVYSKGSLYEEAM 488
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD 139
+VF E ++ V + L+NAL G +D
Sbjct: 489 EVFREFKQAGLKADVVLYSELINALCKNGLVD 520
Score = 45.1 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 5/111 (4%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKM-FDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARL 102
LKP NL+ Y+ +I G+ + F + +I ++ + V P+ I + ++++ R L
Sbjct: 253 LKP---NLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNG-VQPDRITYNSLLAVCSRGGL 308
Query: 103 LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153
E A +F+EM + + V + NTLL+A+ G++D E+ + K I
Sbjct: 309 WEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKI 359
>gi|449436409|ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Cucumis sativus]
Length = 868
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
+ +++ Y+ ++ G+ F+E+ ++ ++K D RV P + + +I Y + L E A+
Sbjct: 430 KKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKD-RVFPNLLTYSTLIDVYSKGSLYEEAM 488
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD 139
+VF E ++ V + L+NAL G +D
Sbjct: 489 EVFREFKQAGLKADVVLYSELINALCKNGLVD 520
Score = 45.1 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 5/111 (4%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKM-FDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARL 102
LKP NL+ Y+ +I G+ + F + +I ++ + V P+ I + ++++ R L
Sbjct: 253 LKP---NLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNG-VQPDRITYNSLLAVCSRGGL 308
Query: 103 LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153
E A +F+EM + + V + NTLL+A+ G++D E+ + K I
Sbjct: 309 WEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKI 359
>gi|21553755|gb|AAM62848.1| putative membrane-associated salt-inducible protein [Arabidopsis
thaliana]
Length = 407
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 80 DTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD 139
+ R + E + I Y +A +L+H+L+VF ++ F + RTVKSLN LL A L
Sbjct: 108 ENRHLKSERFAAHAIVLYAQANMLDHSLRVFRDLEKFEISRTVKSLNALLFACLVAKDYK 167
Query: 140 RMKELFI 146
K ++I
Sbjct: 168 EAKRVYI 174
>gi|125562258|gb|EAZ07706.1| hypothetical protein OsI_29963 [Oryza sativa Indica Group]
Length = 465
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query: 90 FCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN 149
F VIS YG++RL + A++VF+ +P F +T + N LL+AL G +L
Sbjct: 156 FSAVISSYGQSRLTDQAVEVFNRLPRFGCPQTTQVYNALLDALCANGSFAGAYKLLRRMA 215
Query: 150 LKAIA--------VLDGLCSNLKI 165
K +A ++D C+ K+
Sbjct: 216 RKGVAPDRATFSTLVDAWCAAGKL 239
>gi|125604075|gb|EAZ43400.1| hypothetical protein OsJ_28005 [Oryza sativa Japonica Group]
Length = 461
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query: 90 FCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN 149
F VIS YG++RL + A++VF+ +P F +T + N LL+AL G +L
Sbjct: 152 FSAVISSYGQSRLTDQAVEVFNRLPRFGCPQTTQVYNALLDALCANGSFAGAYKLLRRMA 211
Query: 150 LKAIA--------VLDGLCSNLKI 165
K +A ++D C+ K+
Sbjct: 212 RKGVAPDRATFSTLVDAWCAAGKL 235
>gi|255574462|ref|XP_002528143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532441|gb|EEF34234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 653
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 39 TEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYG 98
+ P + F+ + +I + F+ ++++L++++ + RV E+ F + YG
Sbjct: 60 SSPPKMGSFKVGDSTFYSLIENYAYSSDFNSLEKVLNRMRLENRVFSEKSFFV-MFKAYG 118
Query: 99 RARLLEHALQVFDEMP-SFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+A L A+++F M F + TVKS N++LN ++ G DR E +
Sbjct: 119 KAHLPNKAIELFYRMSFEFYCKPTVKSFNSVLNVIIQAGFHDRALEFY 166
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N+L ++LII + + + D ++ ++ + +P+ +C ++ + ++ A+ +
Sbjct: 180 NVLSFNLIIKSMCKLGLVDNAIELFREMPV-RKCVPDAYTYCTLMDGLCKVDRIDEAVSL 238
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLC 160
DEM + + N L+N L G R+ +L + LK ++ GLC
Sbjct: 239 LDEMQIEGCFPSPATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLC 297
>gi|224149779|ref|XP_002336862.1| predicted protein [Populus trichocarpa]
gi|222837029|gb|EEE75408.1| predicted protein [Populus trichocarpa]
Length = 370
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Query: 52 LHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFD 111
+ + ++I+ L R + E Q+ LK + P+ I++ N++ + RA + A +VF
Sbjct: 218 IAFSILISILCRKRRASEAQEFFDSLK--DKFEPDVIVYTNLVRGWCRAGNISEAERVFG 275
Query: 112 EMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMN 168
EM ++ V + + ++++L CG++ R ++F +LD C I N
Sbjct: 276 EMKVAGIKPNVYTYSIVIDSLCRCGQITRAHDVFAE-------MLDAGCQPNSITYN 325
>gi|449525698|ref|XP_004169853.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
chloroplastic-like [Cucumis sativus]
Length = 494
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ ++L+I G+ ++FD+M+Q+ L ++ P F ++I+ YG+ARL E A +V
Sbjct: 271 DIISFNLLIDSYGKKQLFDKMEQVFKSLLR-SKERPTLPTFNSMITNYGKARLREKAEEV 329
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F +M + + +L+ C + + +E+F
Sbjct: 330 FRKMKDMGYDPSYVTCESLIMMYGHCDCVSKAREIF 365
Score = 37.0 bits (84), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
R L ++ +IT G+A++ ++ +++ ++K D P + ++I YG + A
Sbjct: 304 RPTLPTFNSMITNYGKARLREKAEEVFRKMK-DMGYDPSYVTCESLIMMYGHCDCVSKAR 362
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCG 136
++FD M + + V +LN +L+ G
Sbjct: 363 EIFDGMVNSGKEVRVSTLNAMLDVYCING 391
>gi|15221377|ref|NP_177613.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207514|sp|Q9SSF9.1|PP123_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74750
gi|5882748|gb|AAD55301.1|AC008263_32 Contains 2 PF|01535 DUF domains [Arabidopsis thaliana]
gi|332197508|gb|AEE35629.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 855
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+++ Y ++ LGRAK F E+ ++L ++ D P + + +I YGRA L+ A
Sbjct: 355 FKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDG-CKPNTVTYNRLIHSYGRANYLKEA 413
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD-------RMKELFIS 147
+ VF++M + + TL++ G LD RM+E +S
Sbjct: 414 MNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLS 461
Score = 37.0 bits (84), Expect = 3.1, Method: Composition-based stats.
Identities = 21/99 (21%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+ + + Y +++ LG +E + + +++ V P+E ++ ++ +G+A ++ A
Sbjct: 530 FQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWV-PDEPVYGLLVDLWGKAGNVDKA 588
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
Q + M ++ V + N+LL+ L ++ RM E +
Sbjct: 589 WQWYQAMLQAGLRPNVPTCNSLLSTFL---RVHRMSEAY 624
>gi|115445137|ref|NP_001046348.1| Os02g0226900 [Oryza sativa Japonica Group]
gi|49388538|dbj|BAD25660.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|49388672|dbj|BAD25856.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535879|dbj|BAF08262.1| Os02g0226900 [Oryza sativa Japonica Group]
Length = 637
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARL 102
P K ++ Y+++ + LG+ K + + ++K + +IP+ + +IS YGR L
Sbjct: 420 PEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNG-IIPDVFTYNIMISSYGRVGL 478
Query: 103 LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
++ A ++F+ M + + + V + N+L+N L G LD LF
Sbjct: 479 VDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLF 521
Score = 42.0 bits (97), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
K ++ ++ Y++++ L +A M D+ Q+ +K +P+ + +I G+A
Sbjct: 215 KGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQ-KHCVPDAYTYTILIRMSGKAGRTS 273
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNAL 132
L FDEM S + + NT++ AL
Sbjct: 274 KFLSFFDEMVSKGCVLNLIAFNTIIEAL 301
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 40 EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR 99
EA KP +++ Y+ +I LG+ DE + +++ + P+ + +I +G+
Sbjct: 490 EASSCKP---DVVTYNSLINCLGKHGDLDEAHMLFKEMQ-EKGYDPDVFTYSILIECFGK 545
Query: 100 ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ +E A +FDEM S + + N LL+ L GK + +L+
Sbjct: 546 SNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLY 591
>gi|261333150|emb|CBH16145.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 389
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N+ HY +I+ GRA ++ I Q+ + V P + VI+ A AL++
Sbjct: 149 NVFHYTTVISACGRAGKWEAAMSIFDQMTKN-EVKPNVYTYTAVINACASAEKAAVALRM 207
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRM-------KELFISFNL-KAIAVLDG 158
F M +V V+++ L+NA G+ +R +ELF++ N+ A +DG
Sbjct: 208 FAHMRLADVPPNVQTMTALVNACARSGEWERAIKILRDCEELFVAPNVFTYTAAMDG 264
>gi|356513567|ref|XP_003525484.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Glycine max]
Length = 857
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+ +I G+ ++++ ++IL + ++ V+P + VI +G+A L E AL +
Sbjct: 414 NMQTYEGLIFACGKGGLYEDAKKILLHM-NEKGVVPSSKAYTGVIEAFGQAALYEEALVM 472
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCG 136
F+ M TV++ N+L++A G
Sbjct: 473 FNTMNEVGSNPTVETYNSLIHAFARGG 499
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVI---PEEIIFCNVISFYGRA 100
L PF+ L D + A+ D Q+ L K+ R I P E I +I+ GR
Sbjct: 89 LDPFKNKLSLNDFALVFKEFAQRGD-WQRSLRLFKYMQRQIWCKPNEHIHTIMITLLGRE 147
Query: 101 RLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
LL+ +VFDEMPS V RTV S ++NA G+ EL
Sbjct: 148 GLLDKCREVFDEMPSNGVVRTVYSYTAIINAYGRNGQFHASLELL 192
>gi|194690470|gb|ACF79319.1| unknown [Zea mays]
Length = 671
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 44/84 (52%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+ L++ L +M + + ++ V P+E +IS YGRA + + A+++F M
Sbjct: 63 FALLVPALASRRMLNHARCLVLDTMPSFSVAPDEPTLAALISAYGRAAIPQEAVKLFRMM 122
Query: 114 PSFNVQRTVKSLNTLLNALLTCGK 137
P+ V RT S N +L A+L G+
Sbjct: 123 PNIGVPRTALSYNAVLKAILCRGR 146
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMK 142
V P+ + +I +G + +E A++VF +M V V + NTLLNA + G L+ +
Sbjct: 162 VAPDVSTYNTLIWGFGLCKKMETAVRVFGDMKGHGVTPDVTTYNTLLNAWVRAGDLESAR 221
Query: 143 ELF 145
++F
Sbjct: 222 KVF 224
Score = 36.6 bits (83), Expect = 4.1, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I G K + ++ +K V P+ + +++ + RA LE A +VFDEM
Sbjct: 169 YNTLIWGFGLCKKMETAVRVFGDMKGHG-VTPDVTTYNTLLNAWVRAGDLESARKVFDEM 227
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLCSN 162
+R S N ++ + +++ LF K + A++ GLC +
Sbjct: 228 AGEGTERNSVSYNVMIKGYVEGNRVEEAVALFAEMAEKGLRLSEKTFAALMPGLCDD 284
>gi|357519615|ref|XP_003630096.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524118|gb|AET04572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 635
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y+L+I G+ + FD+M+Q+ L ++ P F ++I YG+ARL + A V
Sbjct: 261 DLITYNLLIDSYGKKQQFDKMEQVFKSLSR-SKEKPTLPTFNSMILNYGKARLKDKAENV 319
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F M + + +L++ CG + ELF
Sbjct: 320 FQNMTDMGYTPSFVTHESLIHMYGLCGCVSNAVELF 355
Score = 35.8 bits (81), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 27 QLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE 86
Q+FK+ + E P L F +L+Y G+A++ D+ + + + D P
Sbjct: 283 QVFKSL---SRSKEKPTLPTFNSMILNY-------GKARLKDKAENVFQNMT-DMGYTPS 331
Query: 87 EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ ++I YG + +A+++FD++ V V +LN +L+ G LF
Sbjct: 332 FVTHESLIHMYGLCGCVSNAVELFDQLIESKVPIKVSTLNAMLDVYCINGLQQEADSLF 390
>gi|358348674|ref|XP_003638369.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355504304|gb|AES85507.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 501
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVF 110
+LH+ +I RA D Q +++K + +P+ + + +I+ Y AR LE A ++F
Sbjct: 352 VLHFTTLIDGFSRAGKLDACQYFFNEMKKNG-CMPDVVAYTVMITGYVVARELEKAQEMF 410
Query: 111 DEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA 154
+EM S + V + N+++ L GK D +F K +
Sbjct: 411 EEMLSKELVPNVFTYNSMIRGLCMAGKFDEACSMFKEMERKGCS 454
>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial [Vitis vinifera]
gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
Length = 765
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 69/131 (52%), Gaps = 7/131 (5%)
Query: 17 HLQKHPKL--ALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 74
HL K ++ AL++F+ N ++ ++P +++ Y+ +I L + +E ++
Sbjct: 349 HLCKFRRVDEALEVFEKMN--GGESNGFLVEP---DVITYNTLIDGLCKVGRQEEGLGLV 403
Query: 75 HQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLT 134
+++ R +P + + +I Y +A ++E A ++FD+M V V +LNTL++ +
Sbjct: 404 ERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCK 463
Query: 135 CGKLDRMKELF 145
G+++ E F
Sbjct: 464 HGRINGAVEFF 474
>gi|357138098|ref|XP_003570635.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
chloroplastic-like [Brachypodium distachyon]
Length = 519
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 63/126 (50%), Gaps = 9/126 (7%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
K R +++ ++++I GR ++FD+M+Q+ L ++ P F ++I+ YG+ARL E
Sbjct: 251 KQCRPDVITFNILIDSYGRKQIFDKMEQVFKSLLR-SKERPTHPTFNSMITNYGKARLKE 309
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF-NLKAI-------AVL 156
A V ++M + + + L+ C + + +++F N ++ A+L
Sbjct: 310 KAESVLEKMDELGFKPSYVTQECLIMMYAYCDCVSKAQQIFDELVNSQSTVPLSSLNAML 369
Query: 157 DGLCSN 162
D C N
Sbjct: 370 DAYCMN 375
>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
Length = 658
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 5/129 (3%)
Query: 41 APPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRA 100
AP + F+ +I F ++++L +++ + RVI E F V YG+A
Sbjct: 67 APKMGSFKLGDSTLSSMIENYANLGDFASVEKLLSRIRLENRVIIERS-FIVVFRAYGKA 125
Query: 101 RLLEHALQVFDEM-PSFNVQRTVKSLNTLLNALLTCGKLDRMKELF---ISFNLKAIAVL 156
L E A+ +F M F +R+VKS N++LN ++ G R E + ++ N+
Sbjct: 126 HLPEKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISP 185
Query: 157 DGLCSNLKI 165
+GL NL I
Sbjct: 186 NGLSFNLVI 194
>gi|222423065|dbj|BAH19514.1| AT3G04130 [Arabidopsis thaliana]
Length = 508
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 41 APPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRA 100
A K +++ YD+ + LG+AK +D M++ + +++ D V + ++ + A
Sbjct: 111 AESCKGHKHSSDAYDMAVDILGKAKKWDRMKEFVERMRGDKLVTLNTVA--KIMRRFAGA 168
Query: 101 RLLEHALQVFDEMPSFNVQRTVKSLNTLLNAL 132
E A+ +FD + F +++ +S+N LL+ L
Sbjct: 169 GEWEEAVGIFDRLGEFGLEKNTESMNLLLDTL 200
>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Glycine max]
Length = 742
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 65/125 (52%), Gaps = 12/125 (9%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLL 103
LKP +Y Y+ II+ L + E +Q+L +K + R+ P+ +++ +IS +G++ +
Sbjct: 318 LKPNQYT---YNSIISFLCKTGRVVEAEQVLRVMK-NQRIFPDNVVYTTLISGFGKSGNV 373
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF---ISFNLK-----AIAV 155
++FDEM + + ++++ L GK+ ++LF +S LK A+
Sbjct: 374 SVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTAL 433
Query: 156 LDGLC 160
+DG C
Sbjct: 434 IDGYC 438
>gi|356495305|ref|XP_003516519.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17525,
mitochondrial-like [Glycine max]
Length = 618
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 59/116 (50%), Gaps = 10/116 (8%)
Query: 39 TEAPPLKPFRY-----NLLH----YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEII 89
+ + L+ FR+ N +H Y +I KL + FD ++Q+L ++ H P + I
Sbjct: 48 SASEALEYFRWASTVPNFVHSQSTYRALIHKLCTFRRFDTVKQLLDEMPHSLGAPPGDDI 107
Query: 90 FCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F +I GRAR+ ++V D + F+ ++K N++L+ L+ +D +E +
Sbjct: 108 FITIIRGLGRARMTRTVIKVLDLVYKFHGSPSLKIFNSILDVLVK-EDIDMAREFY 162
>gi|359482557|ref|XP_002277683.2| PREDICTED: pentatricopeptide repeat-containing protein At5g39710
[Vitis vinifera]
Length = 990
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +++ LG+ K ++ + ++K D P+ + +IS +GRA +E A+++F+E+
Sbjct: 287 YNTVLSALGKLKKTSDLHDLYEKMKQDGPS-PDIFSYNILISSFGRAGRVEEAVKIFEEL 345
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLD----RMKEL 144
+ + + + S N+L+N L G +D R KE+
Sbjct: 346 ENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEM 380
Score = 37.0 bits (84), Expect = 3.3, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ ++ +I LG+ DE +++ + + P+ + + +I +G+ +E A ++
Sbjct: 353 DIISFNSLINCLGKNGDIDEAHMRFKEMREEG-LSPDVVTYSTLIECFGKTDKVEMACRL 411
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
FDEM + + + N LL+ L G+ +L+
Sbjct: 412 FDEMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLY 447
>gi|242063722|ref|XP_002453150.1| hypothetical protein SORBIDRAFT_04g000850 [Sorghum bicolor]
gi|241932981|gb|EES06126.1| hypothetical protein SORBIDRAFT_04g000850 [Sorghum bicolor]
Length = 757
Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 46/91 (50%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
FR + + L++ L +M + + ++ V P+E +IS YGRA + + A
Sbjct: 141 FRPDGDTFALLVPALASRRMLNHARCLVLDTMPSFSVAPDEPTLAALISAYGRAAIPQEA 200
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGK 137
+++F MP V RT S N +L A+L G+
Sbjct: 201 VKLFRMMPDLGVPRTALSYNAVLKAILCRGR 231
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMK 142
V P+ + +I +G + +E A++VF EM V V + N LLNA + G L+ +
Sbjct: 247 VAPDVSTYNTLIWGFGLCKKMETAVRVFGEMKGHGVTPDVTTYNALLNAWVRTGDLESAR 306
Query: 143 ELFISFNLKAI 153
++F K I
Sbjct: 307 KVFDEMTGKGI 317
Score = 36.2 bits (82), Expect = 5.4, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 9/117 (7%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I G K + ++ ++K V P+ + +++ + R LE A +VFDEM
Sbjct: 254 YNTLIWGFGLCKKMETAVRVFGEMKGHG-VTPDVTTYNALLNAWVRTGDLESARKVFDEM 312
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLCSN 162
++R S N ++ + +++ LF K + A++ GLC +
Sbjct: 313 TGKGIERNSVSYNVMIKGYVEGNRVEEAVALFAEMGEKGLRLSEKTFAALMPGLCDD 369
>gi|413926076|gb|AFW66008.1| hypothetical protein ZEAMMB73_411794 [Zea mays]
Length = 633
Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARL 102
P K ++ Y++I + LG+ K M + ++ + V+P+ + +IS +GR L
Sbjct: 417 PEKGITTDVGMYNMIFSALGKLKQVSFMSSLYDTMRANG-VVPDVFTYNIMISSFGRVGL 475
Query: 103 LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
++ A ++F+EM + + V + N+++N L G LD LF
Sbjct: 476 VDKASELFEEMEDGSCKPDVVTYNSMINCLGKNGDLDEAHMLF 518
>gi|18396782|ref|NP_566222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|79312733|ref|NP_001030630.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546763|sp|Q9M8W9.2|PP211_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g04130, mitochondrial; Flags: Precursor
gi|332640519|gb|AEE74040.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332640520|gb|AEE74041.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 508
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 41 APPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRA 100
A K +++ YD+ + LG+AK +D M++ + +++ D V + ++ + A
Sbjct: 111 AESCKGHKHSSDAYDMAVDILGKAKKWDRMKEFVERMRGDKLVTLNTVA--KIMRRFAGA 168
Query: 101 RLLEHALQVFDEMPSFNVQRTVKSLNTLLNAL 132
E A+ +FD + F +++ +S+N LL+ L
Sbjct: 169 GEWEEAVGIFDRLGEFGLEKNTESMNLLLDTL 200
>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
Length = 827
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y+ ++ L +A+ D+ + L Q+ + RV+P + N+I Y + A++V
Sbjct: 266 DLVTYNSVVHALCKARAMDKAEAFLRQMV-NKRVLPNNWTYNNLIYGYSSTGQWKEAVRV 324
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA 152
F EM ++ V +L+ L+ +L GK+ +++F + +K
Sbjct: 325 FKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKG 367
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 12/104 (11%)
Query: 50 NLLHYDLI--------ITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRAR 101
N +H D++ + KLGR + Q I L + + P+ +++ ++ Y
Sbjct: 506 NGMHLDIVFFSSIINNLCKLGRVM---DAQNIF-DLTVNVGLHPDAVVYSMLMDGYCLVG 561
Query: 102 LLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+E AL+VFD M S ++ V TL+N G++D LF
Sbjct: 562 KMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLF 605
Score = 35.4 bits (80), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
++ Y++++ +M + + D + P+ F +I Y +L+ A+ +
Sbjct: 371 DVFSYNIMLNGYATKGCLVDMTDLFDLMLGDG-IAPDFYTFNVLIKAYANCGMLDKAMII 429
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F+EM V+ V + T++ AL GK+D E F
Sbjct: 430 FNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKF 465
>gi|212275340|ref|NP_001130930.1| uncharacterized protein LOC100192035 [Zea mays]
gi|195614146|gb|ACG28903.1| hypothetical protein [Zea mays]
gi|219885707|gb|ACL53228.1| unknown [Zea mays]
gi|413935208|gb|AFW69759.1| hypothetical protein ZEAMMB73_548432 [Zea mays]
Length = 748
Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 44/84 (52%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+ L++ L +M + + ++ V P+E +IS YGRA + + A+++F M
Sbjct: 140 FALLVPALASRRMLNHARCLVLDTMPSFSVAPDEPTLAALISAYGRAAIPQEAVKLFRMM 199
Query: 114 PSFNVQRTVKSLNTLLNALLTCGK 137
P+ V RT S N +L A+L G+
Sbjct: 200 PNIGVPRTALSYNAVLKAILCRGR 223
Score = 38.1 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMK 142
V P+ + +I +G + +E A++VF +M V V + NTLLNA + G L+ +
Sbjct: 239 VAPDVSTYNTLIWGFGLCKKMETAVRVFGDMKGHGVTPDVTTYNTLLNAWVRAGDLESAR 298
Query: 143 ELF 145
++F
Sbjct: 299 KVF 301
Score = 36.6 bits (83), Expect = 4.5, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I G K + ++ +K V P+ + +++ + RA LE A +VFDEM
Sbjct: 246 YNTLIWGFGLCKKMETAVRVFGDMKGHG-VTPDVTTYNTLLNAWVRAGDLESARKVFDEM 304
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLCSN 162
+R S N ++ + +++ LF K + A++ GLC +
Sbjct: 305 AGEGTERNSVSYNVMIKGYVEGNRVEEAVALFAEMAEKGLRLSEKTFAALMPGLCDD 361
>gi|357499195|ref|XP_003619886.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494901|gb|AES76104.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 576
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 33/142 (23%)
Query: 8 SPFRLASLLHLQKHPKLALQLF---KNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRA 64
+P L ++ QK+P AL++F K+ PN + +N Y +I LG +
Sbjct: 10 NPTYLTQIIRTQKNPLKALEIFNEAKSKYPN-----------YSHNGPVYATMINILGTS 58
Query: 65 KMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKS 124
EM ++ Q+K D+ ++ E A+ ++ +P FN +S
Sbjct: 59 GRLKEMSDLIEQMKEDSWLVDE-------------------AISLYKNIPQFNCVNWTQS 99
Query: 125 LNTLLNALLTCGKLDRMKELFI 146
NTLL ++ KL+ LF+
Sbjct: 100 FNTLLKIMVNENKLEDAHSLFV 121
>gi|356529509|ref|XP_003533333.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g12300, mitochondrial-like [Glycine max]
Length = 450
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 9/133 (6%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
K N++ Y+++I ++KM DE + ++ H ++P + + +++ ++ +
Sbjct: 239 KGISANVVSYNIMIKGFCKSKMVDEALNLFKEM-HQKNMVPTIVTYGSLMDGLCKSGRIS 297
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN------LKAIAVLDG 158
+ ++ DEM + V + N+L++ L G LDR LF L +LDG
Sbjct: 298 YVWELIDEMHDRGIPADVITYNSLIDGLCKNGHLDRAIALFNKMKDXRFDRLTFTILLDG 357
Query: 159 LCSNLKIIMNDSQ 171
LC + + D+Q
Sbjct: 358 LCKGGR--LKDAQ 368
>gi|222622462|gb|EEE56594.1| hypothetical protein OsJ_05954 [Oryza sativa Japonica Group]
Length = 579
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARL 102
P K ++ Y+++ + LG+ K + + ++K + +IP+ + +IS YGR L
Sbjct: 362 PEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNG-IIPDVFTYNIMISSYGRVGL 420
Query: 103 LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
++ A ++F+ M + + + V + N+L+N L G LD LF
Sbjct: 421 VDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLF 463
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
K ++ ++ Y++++ L +A M D+ Q+ +K +P+ + +I G+A
Sbjct: 157 KGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQ-KHCVPDAYTYTILIRMSGKAGRTS 215
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNAL 132
L FDEM S + + NT++ AL
Sbjct: 216 KFLSFFDEMVSKGCVLNLIAFNTIIEAL 243
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 40 EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR 99
EA KP +++ Y+ +I LG+ DE + +++ + P+ + +I +G+
Sbjct: 432 EASSCKP---DVVTYNSLINCLGKHGDLDEAHMLFKEMQ-EKGYDPDVFTYSILIECFGK 487
Query: 100 ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ +E A +FDEM S + + N LL+ L GK + +L+
Sbjct: 488 SNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLY 533
>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 624
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 62/126 (49%), Gaps = 9/126 (7%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
++ ++ R + +E +++L ++K + + P+ I + +IS Y + ++ AL+VFDEM
Sbjct: 500 FNTLMQGYCRERKVEEAKKLLDEMK-ERGIKPDHISYNTLISGYSKRGDMKDALEVFDEM 558
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA--------VLDGLCSNLKI 165
S T+ + N L+ G+ D +EL K I V++ + +N +
Sbjct: 559 LSLGFDPTLLTYNALIQGYSKIGEADHAEELLREMQSKGITPDDSTYLYVIEAMKTNDDL 618
Query: 166 IMNDSQ 171
+ ND +
Sbjct: 619 VENDDK 624
Score = 38.9 bits (89), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNT 127
D Q+L ++ + +V+P+E+ F ++ Y R R +E A ++ DEM ++ S NT
Sbjct: 479 DRAFQLLKEMD-NAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNT 537
Query: 128 LLNALLTCGKLDRMKELF 145
L++ G + E+F
Sbjct: 538 LISGYSKRGDMKDALEVF 555
>gi|125582060|gb|EAZ22991.1| hypothetical protein OsJ_06687 [Oryza sativa Japonica Group]
Length = 466
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 71/143 (49%), Gaps = 19/143 (13%)
Query: 23 KLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR 82
++A+QLF+ + P KP ++ Y+ ++ L RA +++ +++ ++
Sbjct: 298 EVAIQLFR----------SMPCKP---DIFSYNAVLKGLCRAARWEDAGELIAEMVGKD- 343
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMK 142
P E+ F +I+ + L++ A++V ++MP++ + + N L+N G+LD
Sbjct: 344 CPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPDIFTYNALINGFSEQGRLDDAL 403
Query: 143 ELFISFNLKAIAV-----LDGLC 160
+L + + K A+ L GLC
Sbjct: 404 KLLSTMSCKPDAISYNSTLKGLC 426
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 8/115 (6%)
Query: 52 LHYDLIITKLGRAKMFDEMQQILHQL-KHDTRVIPEEIIFCNVISFYGRARLLEHALQVF 110
L ++ ++ RA+ + + +++ Q+ + D +I E+ F +I + L+ +A QVF
Sbjct: 212 LGFNAVLKGFCRAERWHDASELIAQMFRDDCPLI--EMTFNILIDMLCQNGLVNYATQVF 269
Query: 111 DEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI-----AVLDGLC 160
++MP + + + ++LLN G ++ +LF S K AVL GLC
Sbjct: 270 EQMPRYRCTPDIVTYSSLLNGFSEQGLVEVAIQLFRSMPCKPDIFSYNAVLKGLC 324
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 17/127 (13%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARL 102
P+ P Y Y+ ++ L AK ++E ++++ ++ + R P E+ F I + + L
Sbjct: 2 PVAPDTYT---YNTVLKGLCIAKKWEEAEELMAEMIRN-RCPPNEVTFATQIRSFCQNGL 57
Query: 103 LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF---------ISFNLKAI 153
L+ A+Q+ D+MP + V +TL+N G +D+ +L + +N
Sbjct: 58 LDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLNTMLCKPNTVCYN---- 113
Query: 154 AVLDGLC 160
A L GLC
Sbjct: 114 AALKGLC 120
>gi|359492929|ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Vitis vinifera]
Length = 513
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 69/135 (51%), Gaps = 11/135 (8%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
+L+ + P+ AL++F + F +N Y I+ KL ++K F + +
Sbjct: 65 NLIKRETDPQRALEIF---------NRVAEQRGFSHNNATYATILHKLAKSKKFQAIDAV 115
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM-PSFNVQRTVKSLNTLLNAL 132
LHQ+ ++T E IF N++ + + L E +++FD + P + ++K+++T LN L
Sbjct: 116 LHQMTYETCKF-HEGIFLNLMKHFSKLSLHERVVEMFDAIRPIVREKPSLKAISTCLNLL 174
Query: 133 LTCGKLDRMKELFIS 147
+ ++D ++ ++
Sbjct: 175 VESNQVDLTRKFLLN 189
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 17/121 (14%)
Query: 52 LHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFD 111
L Y+ +I + D +I+ +K + P + +++ + + LE A +VFD
Sbjct: 273 LTYNALINGFCHGEKVDRALKIMEFMKKNG-CNPNVFNYSALMNGFCKEGRLEEAKEVFD 331
Query: 112 EMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF------------ISFNLKAIAVLDGL 159
EM S ++ TL+N G++D EL ++FN+ +L GL
Sbjct: 332 EMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMRENKCRADTVTFNV----ILGGL 387
Query: 160 C 160
C
Sbjct: 388 C 388
Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/96 (19%), Positives = 46/96 (47%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
NL+ Y +I L + E ++ ++ +++P+ + + +I+ + ++ AL++
Sbjct: 235 NLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNALINGFCHGEKVDRALKI 294
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ M V + + L+N G+L+ KE+F
Sbjct: 295 MEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVF 330
>gi|255540825|ref|XP_002511477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550592|gb|EEF52079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 754
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 69 EMQQILHQLKHDTRVI---PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSL 125
+ Q+ L K+ R I P E I+ +IS GR LLE + ++F+EMP+ V R+V S
Sbjct: 121 DWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKSTEIFEEMPTHGVPRSVFSY 180
Query: 126 NTLLNALLTCGK-------LDRMKE 143
L+N+ G+ L+RMK+
Sbjct: 181 TALINSYGRHGQYEVSLELLERMKK 205
Score = 41.2 bits (95), Expect = 0.18, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+ +I G+ + ++ ++IL + + ++P + VI YG+A E AL +
Sbjct: 422 NMGTYEGLIYACGKGGLHEDAKKILLHMD-EKGIVPSTKAYTGVIEAYGQAASYEEALVM 480
Query: 110 FDEMPSFNVQRTVKSLNTLLN 130
F+ M + TV++ N+L+N
Sbjct: 481 FNTMNEMGSKPTVETYNSLIN 501
Score = 39.3 bits (90), Expect = 0.69, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 2/111 (1%)
Query: 40 EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR 99
E P ++ Y +I GR ++ ++L ++K + +V P + + VI+ R
Sbjct: 166 EEMPTHGVPRSVFSYTALINSYGRHGQYEVSLELLERMKKE-KVTPSILTYNTVINSCAR 224
Query: 100 ARL-LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN 149
L E L +F EM +Q + + NTLLNA G D + +F + N
Sbjct: 225 GGLNWEGLLSLFAEMRHEGIQPDIITYNTLLNACANRGLGDEAEMVFRTMN 275
>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
Length = 814
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y+ ++ L +A+ D+ + L Q+ + RV+P + N+I Y + A++V
Sbjct: 253 DLVTYNSVVHALCKARAMDKAEAFLRQMV-NKRVLPNNWTYNNLIYGYSSTGQWKEAVRV 311
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA 152
F EM ++ V +L+ L+ +L GK+ +++F + +K
Sbjct: 312 FKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKG 354
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 12/104 (11%)
Query: 50 NLLHYDLI--------ITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRAR 101
N +H D++ + KLGR + Q I L + + P+ +++ ++ Y
Sbjct: 493 NGMHLDIVFFSSIINNLCKLGRVM---DAQNIF-DLTVNVGLHPDAVVYSMLMDGYCLVG 548
Query: 102 LLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+E AL+VFD M S ++ V TL+N G++D LF
Sbjct: 549 KMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLF 592
Score = 35.4 bits (80), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
++ Y++++ +M + + D + P+ F +I Y +L+ A+ +
Sbjct: 358 DVFSYNIMLNGYATKGCLVDMTDLFDLMLGDG-IAPDFYTFNVLIKAYANCGMLDKAMII 416
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F+EM V+ V + T++ AL GK+D E F
Sbjct: 417 FNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKF 452
>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
Length = 817
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y+ ++ L +A+ D+ + L Q+ + RV+P + N+I Y + A++V
Sbjct: 256 DLVTYNSVVHALCKARAMDKAEAFLRQMV-NKRVLPNNWTYNNLIYGYSSTGQWKEAVRV 314
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA 152
F EM ++ V +L+ L+ +L GK+ +++F + +K
Sbjct: 315 FKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKG 357
Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 12/104 (11%)
Query: 50 NLLHYDLI--------ITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRAR 101
N +H D++ + KLGR + Q I L + + P+ +++ ++ Y
Sbjct: 496 NGMHLDIVFFSSIINNLCKLGRVM---DAQNIF-DLTVNVGLHPDAVVYNMLMDGYCLVG 551
Query: 102 LLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+E AL+VFD M S ++ V TL+N G++D LF
Sbjct: 552 KMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLF 595
Score = 35.4 bits (80), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
++ Y++++ +M + + D + P+ F +I Y +L+ A+ +
Sbjct: 361 DVFSYNIMLNGYATKGCLVDMTDLFDLMLGDG-IAPDFYTFNVLIKAYANCGMLDKAMII 419
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F+EM V+ V + T++ AL GK+D E F
Sbjct: 420 FNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKF 455
>gi|224137250|ref|XP_002327079.1| predicted protein [Populus trichocarpa]
gi|222835394|gb|EEE73829.1| predicted protein [Populus trichocarpa]
Length = 795
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y++ + L ++ ++ ++ L H + P+ +C +I + A + A + DEM
Sbjct: 560 YNIAMAGLCKSGKVNDARRFFLGLSHGS-FTPDNFTYCTLIHGFSAAGYVNEAFNLRDEM 618
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLCSN 162
+ + + + N LLN L G LDR + LF +LK + ++DG C +
Sbjct: 619 VNKGLVPNITTYNALLNGLCKSGYLDRARRLFDKLHLKGLIPNVVTYNILIDGYCKS 675
Score = 39.3 bits (90), Expect = 0.60, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ ++ L R + + ++ H L V P E+ +C ++ + AL ++D++
Sbjct: 280 YNTLLKGLCRFGDYKDALRLWH-LMLQRGVTPNEVGYCTLLDGLFKMGDFSRALTLWDDI 338
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ + +++ + NT++N L G++D KE F
Sbjct: 339 LARGINKSIYAFNTMINGLCKMGEMDGAKETF 370
>gi|218190347|gb|EEC72774.1| hypothetical protein OsI_06434 [Oryza sativa Indica Group]
Length = 579
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARL 102
P K ++ Y+++ + LG+ K + + ++K + +IP+ + +IS YGR L
Sbjct: 362 PEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNG-IIPDVFTYNIMISSYGRVGL 420
Query: 103 LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
++ A ++F+ M + + + V + N+L+N L G LD LF
Sbjct: 421 VDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLF 463
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
K ++ ++ Y++++ L +A M D+ Q+ +K +P+ + +I G+A
Sbjct: 157 KGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQ-KHCVPDAYTYTILIRMSGKAGRTS 215
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNAL 132
L FDEM S + + NT++ AL
Sbjct: 216 KFLSFFDEMVSKGCVLNLIAFNTIIEAL 243
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 40 EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR 99
EA KP +++ Y+ +I LG+ DE + +++ + P+ + +I +G+
Sbjct: 432 EASSCKP---DVVTYNSLINCLGKHGDLDEAHMLFKEMQ-EKGYDPDVFTYSILIECFGK 487
Query: 100 ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ +E A +FDEM S + + N LL+ L GK + +L+
Sbjct: 488 SNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLY 533
>gi|168045050|ref|XP_001774992.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673739|gb|EDQ60258.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 385
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 48 RYNL----LHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLL 103
RYN + Y++I+ GRA M D+M++ ++K + V P FC+++S YGR
Sbjct: 238 RYNYPMTRITYNIIMEAYGRAGMVDQMEETWKRMKAEF-VKPNSSTFCSMLSAYGRHGYW 296
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA 154
+ +V + F+ T N ++A + M+++F LK A
Sbjct: 297 HNVEKVMRQARYFDAADTA-VYNAAIDAFQRAQNFEDMEKIFEEMKLKGHA 346
Score = 38.9 bits (89), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+++I G+A +F E++++L ++ + V P+ + + +I +G + Q
Sbjct: 139 SIVTYNILIHGYGKAGLFREVERVLSTMEANN-VAPDTVTWNTLIRVFGLNCKIPEMEQA 197
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
++ + +Q + +LN+L++A T G ++M+ +
Sbjct: 198 YEGLLRQGLQPDMVTLNSLISAYGTAGLFEKMESV 232
>gi|125590524|gb|EAZ30874.1| hypothetical protein OsJ_14948 [Oryza sativa Japonica Group]
Length = 414
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 48/96 (50%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+ + +++++ L R ++L +L+ D +P + F +VIS Y +A LE A+ V
Sbjct: 116 DTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAV 175
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+++M + + + N L+N G L E++
Sbjct: 176 YNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVY 211
>gi|225438599|ref|XP_002276540.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
chloroplastic [Vitis vinifera]
gi|296082481|emb|CBI21486.3| unnamed protein product [Vitis vinifera]
Length = 489
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ ++++I GR + FD+M+Q+ L ++ P F ++I+ YG+ARL E A V
Sbjct: 278 DIITFNVLIDSYGRRQEFDKMEQVFKSLLR-SKEKPTLPTFNSMITNYGKARLKEKAENV 336
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F +M + +L+ C + R +E+F
Sbjct: 337 FKKMTDMGYAPNFITYESLIMMYGFCDCISRAREIF 372
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
++ +IT G+A++ ++ + + ++ D P I + ++I YG + A ++FDEM
Sbjct: 317 FNSMITNYGKARLKEKAENVFKKM-TDMGYAPNFITYESLIMMYGFCDCISRAREIFDEM 375
Query: 114 PSFNVQRTVKSLNTLLNALLTCG 136
+ + V +LN +L G
Sbjct: 376 MASKKEMKVSTLNAMLEVYCMNG 398
>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 725
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 61/116 (52%), Gaps = 9/116 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ ++ +I + R + DE ++ ++K D+ V+P+E+I CN++S GR + + +
Sbjct: 179 DVVTWNTMIERYCRFGLLDEAFKLFEEMK-DSNVMPDEMILCNIVSACGRTGNMRYNRAI 237
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLT----CGKLDRMKELFISFNLKAIAVLDGLCS 161
+D F ++ V+ LL AL+T G +D E F +++ + V + S
Sbjct: 238 YD----FLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVS 289
>gi|224083253|ref|XP_002306972.1| predicted protein [Populus trichocarpa]
gi|222856421|gb|EEE93968.1| predicted protein [Populus trichocarpa]
Length = 709
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 72 QILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA 131
Q+L ++++ + V P+ + + +I +G+ L+HA+ FD M S ++ + NTL++
Sbjct: 431 QVLREMEN-SGVRPDRVFYNVMIDTFGKFNCLDHAMATFDRMLSEGIEPDTVTWNTLIDC 489
Query: 132 LLTCGKLDRMKELF 145
GK DR +ELF
Sbjct: 490 HCRAGKHDRAEELF 503
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/83 (19%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
++++I G + +D+++ +L ++ ++P + + +I YG++ A++ D+M
Sbjct: 518 FNIMINSFGDQERWDDVKNLLAHMRSQG-LVPNSVTYTTLIDIYGKSGRFNDAIECLDDM 576
Query: 114 PSFNVQRTVKSLNTLLNALLTCG 136
+ ++ + N L+NA G
Sbjct: 577 KAAGLKPSSTMYNALINAYAQRG 599
>gi|168034142|ref|XP_001769572.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679114|gb|EDQ65565.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 871
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 16/113 (14%)
Query: 50 NLLHYDLIITKLGRA--------KMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRAR 101
NL+ Y+ II G+ +F+EMQ+ V P+ I F ++I+ R
Sbjct: 268 NLITYNTIIDACGKGGVDLKKALDIFEEMQK--------EGVEPDRITFNSLIAVCSRGS 319
Query: 102 LLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA 154
L E + +VF EM +++ + + NTL++A+ G+++ + S LK I+
Sbjct: 320 LWEDSQRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMRLKNIS 372
>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1043
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y+++I +G+ M DE + ++K + ++P+ I F ++I G+ L A ++
Sbjct: 912 DLVTYNILIDGVGKMGMVDEAESYFKRMK-EKGIVPDVITFTSLIESLGKVDKLLEACEL 970
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA 152
FD M +V + N L++ L GK+ +F +K
Sbjct: 971 FDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKG 1013
Score = 38.1 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 8/110 (7%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+ ++I L ++ DE + + +K + R P + + +++ +A LE A +VF EM
Sbjct: 325 FTVLIDALVKSGNIDEACKFFNGMK-NLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEM 383
Query: 114 PSFNVQRTVKSLNTLLNAL-------LTCGKLDRMKELFISFNLKAIAVL 156
N + NTL++ L + CG MK+ + NL+ ++
Sbjct: 384 KENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIM 433
>gi|225457182|ref|XP_002280557.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic [Vitis vinifera]
Length = 869
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 69 EMQQILHQLKHDTRVI---PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSL 125
+ Q+ L K+ R I P E I+ +I GR LLE ++FDEMPS V +V S
Sbjct: 125 DWQRSLRLFKYMQRQIWCKPNEHIYTIMIGVLGREGLLEKCQEIFDEMPSHGVAPSVFSF 184
Query: 126 NTLLNALLTCGK-------LDRMKELFIS 147
L+NA G+ LDRMK+ +S
Sbjct: 185 TALINAYGRNGQYKSSLELLDRMKKERVS 213
Score = 42.7 bits (99), Expect = 0.059, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+ +I G+ + ++ ++IL + ++ V+P + VI YG+A L E AL
Sbjct: 426 NMETYEGLIFACGKGGLHEDAKKILLHM-NEKGVVPSSKAYTGVIEAYGQAALYEEALVA 484
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA 154
F+ M + TV++ N+L+ G + + + +A
Sbjct: 485 FNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVA 529
Score = 38.9 bits (89), Expect = 0.81, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I LGR + ++ Q+I ++ V P F +I+ YGR + +L++ D M
Sbjct: 149 YTIMIGVLGREGLLEKCQEIFDEMPSHG-VAPSVFSFTALINAYGRNGQYKSSLELLDRM 207
Query: 114 PSFNVQRTVKSLNTLLNA 131
V ++ + NT++N+
Sbjct: 208 KKERVSPSILTYNTVINS 225
>gi|449475395|ref|XP_004154439.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
chloroplastic-like [Cucumis sativus]
Length = 511
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 47/92 (51%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+ I G+AKMF EM+ IL + +D P+ + + +GR+ LE +
Sbjct: 260 NTITYNTFIDAYGKAKMFAEMESILVDMLNDDGCKPDVWTMNSTLRAFGRSGQLETMEKC 319
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRM 141
+++ +Q ++++ N LL++ ++M
Sbjct: 320 YEKFQEAGIQPSIQTFNILLDSYGKAESYEKM 351
>gi|357500143|ref|XP_003620360.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495375|gb|AES76578.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 426
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 11/130 (8%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+L Y+++I L +AKM DE + +++ + + P+ I + +I G+ + + +
Sbjct: 240 DLRSYNIMINGLSKAKMVDEAVILFKEMQFKS-MTPDTITYSTLIDGLGKLGRISYVWDL 298
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA--------VLDGLCS 161
DEM + V + ++LLN L G D +F K ++DGLC
Sbjct: 299 IDEMRATGRSANVITYSSLLNVLCKSGHFDTAIRIFTKIKDKGFEPNMVTYNILVDGLCK 358
Query: 162 NLKIIMNDSQ 171
N + + D+Q
Sbjct: 359 NGR--LKDAQ 366
>gi|6721172|gb|AAF26800.1|AC016829_24 hypothetical protein [Arabidopsis thaliana]
Length = 572
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 41 APPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRA 100
A K +++ YD+ + LG+AK +D M++ + +++ D V + ++ + A
Sbjct: 175 AESCKGHKHSSDAYDMAVDILGKAKKWDRMKEFVERMRGDKLVTLNTV--AKIMRRFAGA 232
Query: 101 RLLEHALQVFDEMPSFNVQRTVKSLNTLLNAL 132
E A+ +FD + F +++ +S+N LL+ L
Sbjct: 233 GEWEEAVGIFDRLGEFGLEKNTESMNLLLDTL 264
>gi|449436958|ref|XP_004136259.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Cucumis sativus]
gi|449497032|ref|XP_004160294.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Cucumis sativus]
Length = 504
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
+ F +N Y II L + K F + +LHQ+ +DT + E IF N++ + ++ + E
Sbjct: 77 QGFNHNHATYASIIQNLAKYKKFQAIDGVLHQMTYDTCKVHEG-IFLNLMKHFSKSSMHE 135
Query: 105 HALQVFDEMPSFNVQR-TVKSLNTLLNALLTCGKLDRMKELFIS 147
L +F + S ++ ++K+++T LN L+ ++D ++L ++
Sbjct: 136 RVLDMFYAIKSIVREKPSLKAISTCLNLLVESDRVDLARKLLVN 179
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 17/121 (14%)
Query: 52 LHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFD 111
L Y+++I + D + IL +K + P + +++ Y + L+ A +VF+
Sbjct: 263 LTYNILINGFCQRGKVDRARTILEFMKSNG-CSPNVFNYSVLMNGYCKEGRLQEAKEVFN 321
Query: 112 EMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF------------ISFNLKAIAVLDGL 159
E+ S ++ S TL+N L G++D EL ++FN+ +L GL
Sbjct: 322 EIKSLGMKPDTISYTTLINCLCRTGRVDEATELLQQMKDKDCRADTVTFNV----MLGGL 377
Query: 160 C 160
C
Sbjct: 378 C 378
>gi|224065166|ref|XP_002301697.1| predicted protein [Populus trichocarpa]
gi|222843423|gb|EEE80970.1| predicted protein [Populus trichocarpa]
Length = 499
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 11/116 (9%)
Query: 22 PKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT 81
P A++ F+ ND +P ++L++ LG+ MFD M + +K +
Sbjct: 94 PGSAVKFFRWAGLQLNDKHSP---------YSWNLVVDLLGKNSMFDAMWGAIKSMKREN 144
Query: 82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGK 137
V F +V S Y ++ A+ F+ M + R V +LN+LL+A+ G+
Sbjct: 145 LV--SLATFASVFSSYVIVDRVKEAIMTFEVMDQYGCTRNVVALNSLLSAICREGR 198
>gi|449487793|ref|XP_004157803.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Cucumis sativus]
Length = 864
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 10/103 (9%)
Query: 69 EMQQILHQLKHDTRVI---PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSL 125
+ Q+ L K+ R I P E I+ +IS GR LLE ++FDEM S V R+V S
Sbjct: 127 DWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSY 186
Query: 126 NTLLNALLTCGK-------LDRMKELFISFNLKAIAVLDGLCS 161
L+NA G+ L+RMK +S N+ + C+
Sbjct: 187 TALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINACA 229
Score = 43.9 bits (102), Expect = 0.027, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+ ++ G+ + ++ ++IL + + ++P + +I YG+A L + AL
Sbjct: 428 NMETYEGLVFACGKGGLHEDAKKILFHM-NGKGIVPSSKAYSGLIEAYGQAALYDEALVA 486
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGK-------LDRMKELFISFNLKAIA-VLDG 158
F+ M + T+ + N+L++ G L RM+E IS N K+ + +++G
Sbjct: 487 FNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEG 543
>gi|449469490|ref|XP_004152453.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Cucumis sativus]
Length = 864
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 10/103 (9%)
Query: 69 EMQQILHQLKHDTRVI---PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSL 125
+ Q+ L K+ R I P E I+ +IS GR LLE ++FDEM S V R+V S
Sbjct: 127 DWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSY 186
Query: 126 NTLLNALLTCGK-------LDRMKELFISFNLKAIAVLDGLCS 161
L+NA G+ L+RMK +S N+ + C+
Sbjct: 187 TALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINACA 229
Score = 43.9 bits (102), Expect = 0.027, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+ ++ G+ + ++ ++IL + + ++P + +I YG+A L + AL
Sbjct: 428 NMETYEGLVFACGKGGLHEDAKKILFHM-NGKGIVPSSKAYSGLIEAYGQAALYDEALVA 486
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGK-------LDRMKELFISFNLKAIA-VLDG 158
F+ M + T+ + N+L++ G L RM+E IS N K+ + +++G
Sbjct: 487 FNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEG 543
>gi|168066970|ref|XP_001785401.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662982|gb|EDQ49775.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 318
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 34/133 (25%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQ------------------------------ 76
+++N+ Y +I GRAK ++ ++++L +
Sbjct: 5 YQHNMYTYTALIDLYGRAKNYEAVEEVLAEMCEVGCDVSIVTFSLVMRWYREAKNLAGIR 64
Query: 77 --LKHDTR--VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNAL 132
L+H R +P E I+ I + E AL VF EM N + + + N L+++L
Sbjct: 65 RVLEHMQREGCLPNEYIYTTFIDALDKDTCHEEALAVFKEMRDSNWEPNIFTYNVLIHSL 124
Query: 133 LTCGKLDRMKELF 145
T GKLD +E+F
Sbjct: 125 ATAGKLDGAREMF 137
>gi|255583688|ref|XP_002532598.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527686|gb|EEF29795.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 553
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 8/84 (9%)
Query: 64 AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVK 123
+K++D+MQ+ + + P+ I + +I+ YG+AR + AL VF+EM V+ T K
Sbjct: 300 SKIYDQMQR--------SGLQPDVISYALLINAYGKARREDEALAVFEEMLDAGVRPTHK 351
Query: 124 SLNTLLNALLTCGKLDRMKELFIS 147
+ N LL+A G +++ + +F S
Sbjct: 352 AYNILLDAFAISGMVEQARTVFKS 375
>gi|428175086|gb|EKX43978.1| hypothetical protein GUITHDRAFT_163700 [Guillardia theta CCMP2712]
Length = 507
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 57/107 (53%), Gaps = 11/107 (10%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
NL H++ II+ ++ + +L +++ R+ P+ I + +IS G+ + + ALQ+
Sbjct: 351 NLFHFNAIISACEKSGYWYTALLLLAEVR-TRRIRPDTITYSTLISACGKGKRSDLALQL 409
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVL 156
F+EM N+L++A T G + + +E+F S K+ A+L
Sbjct: 410 FEEMKK----------NSLMSAYATAGNIHKTREVFDSCKEKSPALL 446
>gi|413945320|gb|AFW77969.1| hypothetical protein ZEAMMB73_790751 [Zea mays]
Length = 509
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNV-ISFYGRARLLEHALQ 108
NL Y+ +++ + + D ++ H L+ D R P + N+ I+ +GR+ L++H +
Sbjct: 184 NLGLYNALMSAYMHSGLLDNCIEVFHALERDPRCGPPNVDSYNILIALFGRSILVDHMER 243
Query: 109 VFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF---ISFNL 150
+ + RT+ + N +++ LT D+M+ F +SF++
Sbjct: 244 TLQSLDASGQPRTIGTYNAIISGYLTAWMWDKMEASFQEMVSFHV 288
>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 722
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 31/129 (24%), Positives = 68/129 (52%), Gaps = 11/129 (8%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ ++ +I + R + DE ++ ++K D+ V+P+E+I CN++S GR + + +
Sbjct: 176 DVVTWNTMIERYCRFGLVDEAFKLFEEMK-DSNVMPDEMILCNIVSACGRTGNMRYNRAI 234
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLT----CGKLDRMKELFISFNLKAIAVLDGLCSNLKI 165
++ F ++ V+ LL AL+T G +D +E F +++ + V + S
Sbjct: 235 YE----FLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSK 290
Query: 166 I--MNDSQV 172
++D+QV
Sbjct: 291 CGRLDDAQV 299
>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g12775, mitochondrial-like [Glycine max]
Length = 750
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y ++I L + K DE + ++KH + P + + ++I + LE A+ +
Sbjct: 575 NVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKN-MFPNIVTYTSLIDALCKNHHLERAIAL 633
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
EM +Q V S LL+ L G+L+ KE+F
Sbjct: 634 LKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIF 669
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 9/119 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y +I L + KM DE + ++K+ +IP+ + + ++I + LE A+ +
Sbjct: 342 NVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKN-MIPDIVTYTSLIDGLCKNHHLERAIAL 400
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLC 160
+M +Q V S LL+AL G+L+ KE F +K +++GLC
Sbjct: 401 CKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLC 459
>gi|356549285|ref|XP_003543024.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g46100-like [Glycine max]
Length = 479
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 71/136 (52%), Gaps = 11/136 (8%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
FR++ + LII++L F + +L ++K + ++ E+I F ++ YGR A
Sbjct: 46 FRHDHETFGLIISRLVTVNQFRPAEGMLERMKQEKCMVTEDI-FLSICRGYGRVHRPLDA 104
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALL-------TCGKLDRMKELFISFNLKAIAVL-DG 158
++VF +M F ++ T K+ T+L+ L+ G M+EL I ++ ++ +L
Sbjct: 105 IRVFHKMEGFQLRPTQKAYLTILDILVEENHVKRAIGFYREMRELGIPSSVVSLNILIKA 164
Query: 159 LCSNLKIIMNDSQVRV 174
LC N + + DS +R+
Sbjct: 165 LCKNKETV--DSALRI 178
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 84 IPEEIIFCNVI--SFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRM 141
IP ++ N++ + ++ AL++F EMP+ Q + TL+N L G +
Sbjct: 151 IPSSVVSLNILIKALCKNKETVDSALRIFQEMPNRGCQPDSYTYGTLINGLCRLGNISEA 210
Query: 142 KELFISFNLKAI--------AVLDGLCSN 162
KELF K +++ GLC +
Sbjct: 211 KELFKEMEQKGFSASVVTYTSLIHGLCQS 239
>gi|356530245|ref|XP_003533693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Glycine max]
Length = 581
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 30/122 (24%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLK--------------------HDTRVIPEEII 89
N++ ++ IIT L + ++ Q++ Q+K D R + +++
Sbjct: 125 NVVSWNTIITALVQCGRIEDAQRLFDQMKDRDVVSWTTMVAGLAKNGRVEDARALFDQMP 184
Query: 90 FCNVISF------YGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKE 143
NV+S+ Y + R L+ ALQ+F MP +R + S NT++ + G+L+R ++
Sbjct: 185 VRNVVSWNAMITGYAQNRRLDEALQLFQRMP----ERDMPSWNTMITGFIQNGELNRAEK 240
Query: 144 LF 145
LF
Sbjct: 241 LF 242
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 11/78 (14%)
Query: 74 LHQLKHDTRVIPEEIIFCNVISF------YGRARLLEHALQVFDEMPSFNVQRTVKSLNT 127
+Q+K R+ E+ NV+S+ Y R L + AL +F MP +R V S NT
Sbjct: 77 FNQVKEAERLF-YEMPLRNVVSWNTMVDGYARNGLTQQALDLFRRMP----ERNVVSWNT 131
Query: 128 LLNALLTCGKLDRMKELF 145
++ AL+ CG+++ + LF
Sbjct: 132 IITALVQCGRIEDAQRLF 149
>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
Length = 545
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F NL+ Y ++I L +++ D+ + Q+ D + P+ + + +I G+ R ++ A
Sbjct: 201 FSPNLISYTIMIDGLCKSRKVDKAITLFKQMV-DKAIYPDVVTYGALIDGLGKQRRVKEA 259
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+F+E + TV + NT+++ L CG+++ L+
Sbjct: 260 YDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLY 298
>gi|224111048|ref|XP_002315730.1| predicted protein [Populus trichocarpa]
gi|222864770|gb|EEF01901.1| predicted protein [Populus trichocarpa]
Length = 760
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 19/137 (13%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDL-----IITKLGRAKMFD 68
++LH + P ALQ F+ R L+ +D II LGR M +
Sbjct: 120 NVLHGARKPDHALQFFRWVE--------------RAGLIQHDRETHMKIIQILGRYSMLN 165
Query: 69 EMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTL 128
+ I+ + +E +F +I YG+A +++ ++++F +M V+R+VKS N L
Sbjct: 166 HARCIVLEDMPKKGFELDEDMFVLLIDSYGKAGIVQESVKMFSKMKELGVERSVKSYNAL 225
Query: 129 LNALLTCGKLDRMKELF 145
++ G+ K F
Sbjct: 226 FKVIVRKGRYMMAKRFF 242
>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Cucumis sativus]
Length = 831
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+L Y+ +I+ R +++E ++ ++K P+++ + ++ YG++R A++V
Sbjct: 290 DLYTYNTLISSCRRGSLYEEAAEVFEEMKA-AGFSPDKVTYNALLDVYGKSRRPREAMEV 348
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
EM + ++ + N+L++A G LD EL
Sbjct: 349 LKEMEASGFAPSIVTYNSLISAYARDGLLDEAMEL 383
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+L Y+ ++ L R ++++ +++L ++K D R P E+ +C+++ Y + +E +
Sbjct: 535 DLSTYNAVLAALARGGLWEQSEKVLAEMK-DGRCKPNELTYCSLLHAYANGKEVERMSAL 593
Query: 110 FDEMPSFNVQRTVKSLNTLL 129
+E+ S ++ L TL+
Sbjct: 594 AEEIYSGIIEPQAVLLKTLV 613
>gi|42573413|ref|NP_974803.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122214363|sp|Q3E9F0.1|PP392_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g18475
gi|110737103|dbj|BAF00503.1| hypothetical protein [Arabidopsis thaliana]
gi|332005185|gb|AED92568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 506
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 75/145 (51%), Gaps = 11/145 (7%)
Query: 3 KAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLG 62
K K S SL+ ++ P+ L +F +A K F +N Y +++ L
Sbjct: 50 KTKFISHESAVSLMKRERDPQGVLDIF---------NKASQQKGFNHNNATYSVLLDNLV 100
Query: 63 RAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSF-NVQRT 121
R K F + ILHQ+K++T +E +F N++ + R+ L + +++F+ + V+ +
Sbjct: 101 RHKKFLAVDAILHQMKYETCRF-QESLFLNLMRHFSRSDLHDKVMEMFNLIQVIARVKPS 159
Query: 122 VKSLNTLLNALLTCGKLDRMKELFI 146
+ +++T LN L+ G+++ ++L +
Sbjct: 160 LNAISTCLNLLIDSGEVNLSRKLLL 184
>gi|357432728|gb|AET79041.1| At3g62890-like protein [Arabidopsis halleri]
gi|357432734|gb|AET79044.1| At3g62890-like protein [Arabidopsis halleri]
Length = 151
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 92 NVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+VI+ Y +A L++HA ++FDEMP +R V S + L+N + CGK +LF
Sbjct: 18 SVINAYAKAGLIDHARKLFDEMP----ERNVISWSCLINGYVXCGKYKEALDLF 67
>gi|297822503|ref|XP_002879134.1| hypothetical protein ARALYDRAFT_481728 [Arabidopsis lyrata subsp.
lyrata]
gi|297324973|gb|EFH55393.1| hypothetical protein ARALYDRAFT_481728 [Arabidopsis lyrata subsp.
lyrata]
Length = 436
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 13/132 (9%)
Query: 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMF 67
+P LA + L++ P L LF N P F++ Y + I KLG AKM+
Sbjct: 132 TPEELADAITLEEDPFLCFHLF-------NWASQQP--RFKHVNCSYHIAIRKLGAAKMY 182
Query: 68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM-PSFNVQ--RTVKS 124
EM I++Q+ R I E ++ ++I ++ +A L A+ +F M S N++ T+++
Sbjct: 183 KEMDDIVNQVL-SVRHIGNENLYNSIIFYFTKAGKLIRAVNIFRHMVTSMNLECRPTIRT 241
Query: 125 LNTLLNALLTCG 136
+ L ALL G
Sbjct: 242 YHILFKALLGRG 253
>gi|242082131|ref|XP_002445834.1| hypothetical protein SORBIDRAFT_07g026590 [Sorghum bicolor]
gi|241942184|gb|EES15329.1| hypothetical protein SORBIDRAFT_07g026590 [Sorghum bicolor]
Length = 426
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 90 FCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN 149
F VIS YG +RL + A++VF+ +P F +T + N LL+AL G +L
Sbjct: 149 FSAVISSYGHSRLPDQAVEVFNRLPRFGCPQTTEVYNALLDALCANGNFTGAYKLLRRMA 208
Query: 150 LKAIA--------VLDGLCSNLKIIMNDSQV 172
K +A ++D C+ K +N++Q
Sbjct: 209 RKGVAPDRATFSTLVDSWCAAGK--LNEAQA 237
>gi|449458524|ref|XP_004146997.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Cucumis sativus]
Length = 481
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 87 EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFI 146
EI + +I+ Y + +E A+ +++EMP + VK+ +TLL LL GK+ +LF
Sbjct: 271 EISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFG 330
Query: 147 SFNLKAIAV--------LDGLCSN 162
I+V LDGLC N
Sbjct: 331 VMKASGISVDSCIYVIFLDGLCKN 354
>gi|357142282|ref|XP_003572519.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 706
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 65/126 (51%), Gaps = 11/126 (8%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQL-KHDTRVIPEEIIFCNVISFYGRAR 101
P KP ++ Y+ ++ L RA+ +++ +++ ++ + D P+E+ F VISF
Sbjct: 287 PCKP---DIFSYNAVLKGLCRAERWEDAGELITEMVRKDCS--PDEVTFNTVISFLCHKG 341
Query: 102 LLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF-----NLKAIAVL 156
L++ AL+V D+MP + + + + L+NA G ++ EL S + +VL
Sbjct: 342 LVDCALEVVDQMPKYGRKPDNFTYSALINAFSEQGCVEDALELLRSMPCSPNTVCYKSVL 401
Query: 157 DGLCSN 162
GLC +
Sbjct: 402 KGLCRD 407
Score = 41.2 bits (95), Expect = 0.18, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 6/120 (5%)
Query: 46 PFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEH 105
P N + Y ++ L R ++++ Q++ ++ + P+E++F +I + L++
Sbjct: 389 PCSPNTVCYKSVLKGLCRDGQWEDVGQLIGEMVRND-CAPDEMVFGLIIDCLCQRGLVDC 447
Query: 106 ALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA-----VLDGLC 160
L+V E+P++ V +LLN G++D +LF S K VL GLC
Sbjct: 448 GLEVLQEVPNYGCSPDVVMYTSLLNGFAEYGRVDDSLKLFKSMTCKPNTVTYNYVLMGLC 507
Score = 36.6 bits (83), Expect = 4.2, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 57/116 (49%), Gaps = 6/116 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+ ++ L + +++++ +++ ++ P E+ F +IS + L+E A+ V
Sbjct: 495 NTVTYNYVLMGLCKVELWEDAGKLIDEMV-GQECPPNEMTFSILISSLCQKGLVECAIDV 553
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAV-----LDGLC 160
F++M + V +TL N L G +D +L + + KA + L GLC
Sbjct: 554 FEKMQMYGCTPNVIIYSTLNNGLSEKGCVDNALKLLNNMSCKADTICYSSALKGLC 609
>gi|356536414|ref|XP_003536733.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g59040-like [Glycine max]
Length = 553
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 64 AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVK 123
+ ++D+MQ + D R P+ + + ++S YG+AR E AL VF+EM V+ T K
Sbjct: 295 SNIYDQMQ------RADLR--PDVVSYALLVSAYGKARREEEALAVFEEMLDAGVRPTRK 346
Query: 124 SLNTLLNALLTCGKLDRMKELFIS 147
+ N LL+A G +++ + +F S
Sbjct: 347 AYNILLDAFSISGMVEQAQTVFKS 370
>gi|403412302|emb|CCL99002.1| predicted protein [Fibroporia radiculosa]
Length = 1124
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
R N+ Y+ II+KL +A+ D+ + H++KH+ + P + + +I+ R A
Sbjct: 778 RPNIYLYNTIISKLAKARRADDALALFHEMKHNQGLAPSSVTYGALIAACCRVGDASSAE 837
Query: 108 QVFDEMP-SFNVQRTVKSLNTLLNALLTCGKLDRMK-----ELFISFNLKAIA 154
++FDEM N + + NT++ L T K DR + E ++ N+K A
Sbjct: 838 RLFDEMSQQSNFKPRIPPYNTMMQ-LYTHTKPDRARVLHYYEALLNANVKPTA 889
>gi|407408131|gb|EKF31681.1| hypothetical protein MOQ_004478 [Trypanosoma cruzi marinkellei]
Length = 1042
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 59/104 (56%), Gaps = 2/104 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+ N + ++++ GRAK ++ +++++ + + R+ EE + +++ Y RAR++E
Sbjct: 781 FQENHVTFNILFEGYGRAKRYEHIKELVEE-RRSKRIPMEEFGYMGLLNIYARARMVEET 839
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNL 150
++ +EM + V T + L+ + ++ G + RM E +IS L
Sbjct: 840 SKIVEEMVASGVPFTSRILSAVASSFSYIGDIPRM-EHYISLLL 882
>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
Group]
gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
Length = 658
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 91 CN-VISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN 149
CN +ISFY ++ +E AL VFDEMP QR + S N+++ + G D+ ELF+
Sbjct: 22 CNALISFYAKSNRIEDALMVFDEMP----QRDIISWNSIIGGCASNGLYDKAVELFVRMW 77
Query: 150 LKA 152
L+
Sbjct: 78 LEG 80
>gi|125524838|gb|EAY72952.1| hypothetical protein OsI_00823 [Oryza sativa Indica Group]
Length = 658
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 91 CN-VISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN 149
CN +ISFY ++ +E AL VFDEMP QR + S N+++ + G D+ ELF+
Sbjct: 446 CNALISFYAKSNRIEDALMVFDEMP----QRDIISWNSIIGGCASNGLYDKAVELFVRMW 501
Query: 150 LKA 152
L+
Sbjct: 502 LEG 504
>gi|224084127|ref|XP_002307219.1| predicted protein [Populus trichocarpa]
gi|222856668|gb|EEE94215.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 10/130 (7%)
Query: 4 AKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGR 63
A PT R+ L+ QK ALQ F+ A L F ++ Y +I KL
Sbjct: 11 AVPTHE-RIVHLILDQKSAPQALQTFE---------WASKLPNFTHSQSTYRALIHKLLT 60
Query: 64 AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVK 123
+ F +Q +L ++ + P+E IF +I GRAR++ ++V D + + ++K
Sbjct: 61 FRRFHTVQHLLDEMPKSIGLPPDESIFLTIIRGLGRARMIRDVIKVLDLVTRYGKNPSLK 120
Query: 124 SLNTLLNALL 133
N++L+ L+
Sbjct: 121 IFNSILDVLV 130
>gi|357432738|gb|AET79046.1| At3g62890-like protein [Arabidopsis halleri]
Length = 151
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 92 NVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+VI+ Y +A L++HA ++FDEMP +R V S + L+N + CGK +LF
Sbjct: 18 SVINAYAKAGLIDHARKLFDEMP----ERNVISWSCLINGYVXCGKYKEALDLF 67
>gi|356558071|ref|XP_003547332.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Glycine max]
Length = 647
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 7/100 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNV-ISFYGRARLLEHALQ 108
+ + Y+ + T LGR K + + ++K D P +I N+ IS +GRA ++ A++
Sbjct: 437 DTIMYNTVFTALGRLKQISHIHDLYEKMKQDGP--PPDIFTYNILISSFGRAGRVDIAVK 494
Query: 109 VFDEMPSFNVQRTVKSLNTLLNALLTCGKLD----RMKEL 144
F+E+ + + + V S N+L+N L G +D R KE+
Sbjct: 495 FFEELENSDCKPDVISYNSLINCLGKNGDVDEAHMRFKEM 534
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 19/131 (14%)
Query: 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKP-FRYNLLHYD---LIITKLGR 63
+P + +L KHP LAL+ F+ P L P FR+ Y+ LI++K
Sbjct: 92 TPLEASEILKALKHPSLALRFFQF---------CPSLNPSFRHESFTYNRLFLILSKSTN 142
Query: 64 AKMFDEMQQILHQLKHDTRVIPEEIIFCNV-ISFYGRARLLEHALQVFDEMPSFNVQRTV 122
FD+ + +LH + D R + I N+ + F+G LE + + + ++++
Sbjct: 143 PARFDQARSLLHDM--DRRAVRGSISTVNILVGFFGAGEDLERCVSL---VKKWDLRLNA 197
Query: 123 KSLNTLLNALL 133
+ LL A L
Sbjct: 198 YTYKCLLQAYL 208
>gi|168011113|ref|XP_001758248.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690704|gb|EDQ77070.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 658
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y ++ G +K + E + L Q+K + P ++C + + Y + L E A++V
Sbjct: 463 NVVTYTTLVDSYGTSKRYREASEYLKQMKSQG-LQPSTSVYCALANSYAKRGLCEQAMEV 521
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGK 137
F M V+ + LN L+NA GK
Sbjct: 522 FKSMEKDGVELNLSMLNLLINAFGVAGK 549
>gi|449443502|ref|XP_004139516.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Cucumis sativus]
gi|449492820|ref|XP_004159111.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Cucumis sativus]
Length = 704
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 38 DTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFY 97
+ +A +KP NL+ Y+ ++ +GRAK +++ I ++ + P + +++ Y
Sbjct: 309 EMKAIGIKP---NLVIYNCLLDAMGRAKRPWQIKTIYKEMIKNG-FSPSWATYASLLRAY 364
Query: 98 GRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
GRAR E AL V+ EM +Q V NTLL G ++ E+F
Sbjct: 365 GRARYGEDALIVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVEIF 412
>gi|115443739|ref|NP_001045649.1| Os02g0110400 [Oryza sativa Japonica Group]
gi|41052925|dbj|BAD07836.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535180|dbj|BAF07563.1| Os02g0110400 [Oryza sativa Japonica Group]
gi|215706484|dbj|BAG93340.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222622028|gb|EEE56160.1| hypothetical protein OsJ_05062 [Oryza sativa Japonica Group]
Length = 747
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 43/84 (51%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+ L+I L +M + + IL + PEE +I+ YG+A + + ++++F M
Sbjct: 139 FSLLIPILASHRMLNHARCILLDTMPSFSIAPEEATVAALIAAYGKANIPQESVKLFRLM 198
Query: 114 PSFNVQRTVKSLNTLLNALLTCGK 137
P + RT S N +L A+L G+
Sbjct: 199 PDLGIARTALSYNAVLKAILCRGR 222
Score = 43.5 bits (101), Expect = 0.033, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+L Y+ +I G K + ++ +K D V P+ + +++ + RA LE A +V
Sbjct: 241 DLSTYNTLIWGFGLCKKMEAALRVFGDMK-DHGVTPDVTTYNTLLNAWVRAGDLESARKV 299
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLCS 161
FDEMP + S N ++ + GK++ LF K + A++ GLC
Sbjct: 300 FDEMPGAGFAQNSVSYNVMIKGYVEAGKVEEAVGLFSEMGEKGLRLSEKTFAALMPGLCD 359
Query: 162 N 162
+
Sbjct: 360 D 360
Score = 39.3 bits (90), Expect = 0.62, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMK 142
V P+ + +I +G + +E AL+VF +M V V + NTLLNA + G L+ +
Sbjct: 238 VTPDLSTYNTLIWGFGLCKKMEAALRVFGDMKDHGVTPDVTTYNTLLNAWVRAGDLESAR 297
Query: 143 ELF 145
++F
Sbjct: 298 KVF 300
>gi|115434588|ref|NP_001042052.1| Os01g0153200 [Oryza sativa Japonica Group]
gi|113531583|dbj|BAF03966.1| Os01g0153200 [Oryza sativa Japonica Group]
Length = 1139
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 9/121 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+ +I KL + + FD+ ++ ++ + P E+ + +I + ++E AL +
Sbjct: 337 NVFAYNALIDKLCKNERFDDADRLFKEMA-GRGLEPNEVTYAILIHALCKRGMIEDALCL 395
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA--------VLDGLCS 161
FD+M ++ TV N+L+N G LDR + L + + ++ GLC
Sbjct: 396 FDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCR 455
Query: 162 N 162
N
Sbjct: 456 N 456
>gi|449464322|ref|XP_004149878.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37230-like [Cucumis sativus]
Length = 760
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 10/131 (7%)
Query: 15 LLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 74
+LH K + AL F+ E L F+++ + II LGRA + + IL
Sbjct: 127 VLHAAKKSEHALNFFRW-------VERAGL--FQHDRETHFKIIEILGRASKLNHARCIL 177
Query: 75 HQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLT 134
+ + V +E +F +I YG+A +++ A+++F +M V+R+VKS + L ++
Sbjct: 178 LDMPNKG-VQWDEDLFVVLIESYGKAGIVQEAVKIFQKMKELGVERSVKSYDALFKEIMR 236
Query: 135 CGKLDRMKELF 145
G+ K F
Sbjct: 237 RGRYMMAKRYF 247
>gi|302781402|ref|XP_002972475.1| hypothetical protein SELMODRAFT_97561 [Selaginella moellendorffii]
gi|300159942|gb|EFJ26561.1| hypothetical protein SELMODRAFT_97561 [Selaginella moellendorffii]
Length = 406
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+ ++ Y+ ++ +LGRA D +L + D V + I + ++ Y RA L+ A
Sbjct: 288 FQPDIFSYNTLLGRLGRAGRVDLFASVLDDMSRDG-VQQDRITYAILVEGYARAGNLDVA 346
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKL 138
L +EM S T +L L+N+LL G+
Sbjct: 347 LAYLEEMKSSGFSPTPSALEVLVNSLLKAGRF 378
>gi|449507993|ref|XP_004163187.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g37230-like [Cucumis sativus]
Length = 760
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 10/131 (7%)
Query: 15 LLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 74
+LH K + AL F+ E L F+++ + II LGRA + + IL
Sbjct: 127 VLHAAKKSEHALNFFRW-------VERAGL--FQHDRETHFKIIEILGRASKLNHARCIL 177
Query: 75 HQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLT 134
+ + V +E +F +I YG+A +++ A+++F +M V+R+VKS + L ++
Sbjct: 178 LDMPNKG-VQWDEDLFVVLIESYGKAGIVQEAVKIFQKMKELGVERSVKSYDALFKEIMR 236
Query: 135 CGKLDRMKELF 145
G+ K F
Sbjct: 237 RGRYMMAKRYF 247
>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Glycine max]
Length = 746
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 14/135 (10%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD-----TRVIPEEIIFCNVISFYGR 99
+ R +++ + +++ L +A+ DE Q+ +L+ V P+ ++F +I +
Sbjct: 310 RKIRPSVVTFGILVNHLCKARRIDEALQVFDRLRGKGGSNWVGVEPDVVLFNTLIDGLCK 369
Query: 100 ARLLEHALQVFDEMPSFNVQR-TVKSLNTLLNALLTCGKLDRMKELFISFNLKAI----- 153
E L + +EM N+ R + N L++ G DR ELF N + +
Sbjct: 370 VGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVI 429
Query: 154 ---AVLDGLCSNLKI 165
++DGLC + ++
Sbjct: 430 TLNTLVDGLCKHGRV 444
Score = 39.3 bits (90), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 57 IITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPS- 115
++T LGR + M ++L +++ ++ P + F +++ +AR ++ ALQVFD +
Sbjct: 287 LLTWLGRGRDIKRMNELLAEME-KRKIRPSVVTFGILVNHLCKARRIDEALQVFDRLRGK 345
Query: 116 -----FNVQRTVKSLNTLLNALLTCGK 137
V+ V NTL++ L GK
Sbjct: 346 GGSNWVGVEPDVVLFNTLIDGLCKVGK 372
>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
Length = 813
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+L Y+ ++ L +A+ D+ + IL Q+ D V+P+ + ++I Y + A++V
Sbjct: 250 DLSTYNCVVNALCKARAMDKAEAILRQMV-DKGVLPDNWTYNSLIYGYSSTGQWKEAVRV 308
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA 152
+M S + V +LN+L+ +L GK+ +++F S +K
Sbjct: 309 SKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKG 351
Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 40 EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR 99
++ +K + ++ Y +++ ++ ++ + + D + P+ IF +I Y +
Sbjct: 345 DSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDG-IAPDSHIFNVLIKAYAK 403
Query: 100 ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+L+ A +F+EM V+ V + +T++ AL GK+D E F
Sbjct: 404 CGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKF 449
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
P +++ ++ Y +E+AL+VFD M S +Q V TL+N G++D L
Sbjct: 529 PNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSL 588
Query: 145 F 145
F
Sbjct: 589 F 589
>gi|15228104|ref|NP_181260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216851|sp|Q9ZUU3.1|PP190_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g37230
gi|4056478|gb|AAC98044.1| unknown protein [Arabidopsis thaliana]
gi|28973644|gb|AAO64144.1| unknown protein [Arabidopsis thaliana]
gi|110736716|dbj|BAF00321.1| hypothetical protein [Arabidopsis thaliana]
gi|330254276|gb|AEC09370.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 757
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 20/136 (14%)
Query: 15 LLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 74
+LH K + ALQ F+ R L+ +D T + KM E+ ++
Sbjct: 123 VLHGAKKLEHALQFFRWTE--------------RSGLIRHDRD-THMKMIKMLGEVSKLN 167
Query: 75 HQ----LKHDTRVIP-EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL 129
H L + +P +E +F +I YG+A +++ ++++F +M V+RT+KS N+L
Sbjct: 168 HARCILLDMPEKGVPWDEDMFVVLIESYGKAGIVQESVKIFQKMKDLGVERTIKSYNSLF 227
Query: 130 NALLTCGKLDRMKELF 145
+L G+ K F
Sbjct: 228 KVILRRGRYMMAKRYF 243
Score = 40.0 bits (92), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
++ +I R K DE +++ ++K + ++ P + + +I Y ++ L++F+EM
Sbjct: 293 FNTMINGFCRFKKMDEAEKLFVEMKGN-KIGPSVVSYTTMIKGYLAVDRVDDGLRIFEEM 351
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLD 157
S ++ + +TLL L GK+ K + + K IA D
Sbjct: 352 RSSGIEPNATTYSTLLPGLCDAGKMVEAKNILKNMMAKHIAPKD 395
>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic [Vitis vinifera]
Length = 867
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 19/104 (18%)
Query: 44 LKPFRYNLLHYDLIITKLGR--------AKMFDEMQQILHQLKHDTRVIPEEIIFCNVIS 95
LKP NL+ Y+ +I G+ A++FDEM + V P+ I F ++++
Sbjct: 251 LKP---NLVTYNAVIDACGKGGVDFNRAAEIFDEMLR--------NGVQPDRITFNSLLA 299
Query: 96 FYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD 139
GR L E A +F EM +++ + + NTLL+A+ G++D
Sbjct: 300 VCGRGGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMD 343
Score = 37.4 bits (85), Expect = 2.5, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQL--KHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
++ Y+ ++ + + D QI+ ++ KH ++P + + VI Y +A L+ AL
Sbjct: 325 DIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKH---IMPNVVTYSTVIDGYAKAGRLDEAL 381
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD 139
+F+EM ++ S NTLL+ G+ +
Sbjct: 382 NLFNEMKFASIGLDRVSYNTLLSIYAKLGRFE 413
>gi|297843350|ref|XP_002889556.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335398|gb|EFH65815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 503
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 9/138 (6%)
Query: 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMF 67
+P L+ +L QK+P AL+LF+ + +N Y +I LG +
Sbjct: 10 TPSLLSQILKKQKNPVTALKLFEEAKVR--------FPSYGHNGTVYATMIDILGNSNRV 61
Query: 68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNT 127
EM+ ++ ++K D+ + + F + I + RA L+ A+ +F + FN S +T
Sbjct: 62 LEMKYVIERMKGDSCECKDSV-FASAIRTFSRAGRLDDAISLFKSLHEFNCVNWTLSFDT 120
Query: 128 LLNALLTCGKLDRMKELF 145
LL ++ +L+ +F
Sbjct: 121 LLQEMVKESELEAACHIF 138
>gi|357432696|gb|AET79025.1| At3g62890-like protein [Arabidopsis halleri]
Length = 151
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 92 NVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+VI+ Y +A L++HA ++FDEMP +R V S + L+N + CGK +LF
Sbjct: 18 SVINAYAKAGLIDHARKLFDEMP----ERNVISWSCLINGYVMCGKYKEALDLF 67
>gi|357458279|ref|XP_003599420.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355488468|gb|AES69671.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 511
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 47/95 (49%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+ II G+A MF++M+ L + + P+ ++I YG ++ +
Sbjct: 237 NSVTYNSIIDGYGKAGMFEQMENSLTDMIENENCQPDVFTLNSLIGSYGNGGKIDKMEKW 296
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
+DE +++ +K+ N ++ + G D+MK +
Sbjct: 297 YDEFQLMSIKPDIKTFNMMIKSYGKAGMYDKMKSV 331
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
++ Y ++I+ + + FD ++++L + + + + + + ++I YG+A + E
Sbjct: 202 DVYTYSVLISCCAKFRRFDLIERVLADMSY-SGIECNSVTYNSIIDGYGKAGMFEQMENS 260
Query: 110 FDEM-PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153
+M + N Q V +LN+L+ + GK+D+M++ + F L +I
Sbjct: 261 LTDMIENENCQPDVFTLNSLIGSYGNGGKIDKMEKWYDEFQLMSI 305
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F ++ Y+ +I G+A ++M + +KH + P + +C++++ Y +A L+
Sbjct: 340 FAPTIVTYNTVIEVYGKAGEIEKMDKHFKNMKH-IGMKPNSVTYCSLVNAYSKAGLIRKI 398
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFIS 147
+ + + +V N +++A G L +M ELF++
Sbjct: 399 DSILRHVENSDVILDTPFFNCIISAYGQVGDLKKMGELFLA 439
>gi|357432716|gb|AET79035.1| At3g62890-like protein [Arabidopsis halleri]
Length = 151
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 92 NVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+VI+ Y +A L++HA ++FDEMP +R V S + L+N + CGK +LF
Sbjct: 18 SVINAYAKAGLIDHARKLFDEMP----ERNVISWSCLINGYVMCGKYKEALDLF 67
>gi|224125420|ref|XP_002329801.1| predicted protein [Populus trichocarpa]
gi|222870863|gb|EEF07994.1| predicted protein [Populus trichocarpa]
Length = 478
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 84/171 (49%), Gaps = 16/171 (9%)
Query: 4 AKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGR 63
+K +P ++ LL ++ + A +F + + ++ FR++ + ++I+KL
Sbjct: 10 SKQITPSKVEQLLRAERDLRKAKIIFDSASAEYSN-------GFRHDHTTFGVMISKLVS 62
Query: 64 AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVK 123
A F +++L+++K + I EEI F ++ YGR + A++VF +M F + T K
Sbjct: 63 ANEFRPAEEMLNRMKEEKCRITEEI-FLSICRGYGRVHMPLDAIRVFHKMNDFGCKPTDK 121
Query: 124 SLNTLLNALLTCGKL-------DRMKELFISFNLKAIAVL-DGLCSNLKII 166
S ++ L+ +L M+E+ + ++ ++ VL LC N I
Sbjct: 122 SYISVFAILVEENQLKVAMSFYKYMREMGVRQSVVSLNVLIKALCKNSGTI 172
>gi|13872949|dbj|BAB44054.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 909
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 9/121 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+ +I KL + + FD+ ++ ++ + P E+ + +I + ++E AL +
Sbjct: 360 NVFAYNALIDKLCKNERFDDADRLFKEMA-GRGLEPNEVTYAILIHALCKRGMIEDALCL 418
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA--------VLDGLCS 161
FD+M ++ TV N+L+N G LDR + L + + ++ GLC
Sbjct: 419 FDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCR 478
Query: 162 N 162
N
Sbjct: 479 N 479
>gi|255552808|ref|XP_002517447.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543458|gb|EEF44989.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 654
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y+ +I G+A++F E + ++H+++ + V+P+ + + ++S Y AL V
Sbjct: 238 DLVAYNSMINVFGKARLFREARMLVHEMR-EVGVLPDTVSYSTLLSVYVENEKFVEALSV 296
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKE 143
F EM N + + N +++ G+LD +KE
Sbjct: 297 FAEMNEANCSLDLMTCNIMIDVY---GQLDMVKE 327
Score = 38.9 bits (89), Expect = 0.77, Method: Composition-based stats.
Identities = 38/156 (24%), Positives = 60/156 (38%), Gaps = 38/156 (24%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD----------------------- 80
L P RY Y +IT G+A MFDE L Q++ D
Sbjct: 165 LSPDRYT---YSTLITSFGKAGMFDESLFWLQQMEQDRVSGDLVLYSNLIELSRKLCDYS 221
Query: 81 -----------TRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL 129
+ + P+ + + ++I+ +G+ARL A + EM V S +TLL
Sbjct: 222 KAISIFMRLKRSGITPDLVAYNSMINVFGKARLFREARMLVHEMREVGVLPDTVSYSTLL 281
Query: 130 NALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKI 165
+ + K +F N +A LD + N+ I
Sbjct: 282 SVYVENEKFVEALSVFAEMN-EANCSLDLMTCNIMI 316
Score = 35.8 bits (81), Expect = 6.2, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ ++ G A++F E L +L + + + +I YG++ E A +
Sbjct: 343 NVVSYNTLLKVYGEAELFGEAIH-LFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNL 401
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
EM ++ + +T+++ GKLDR LF
Sbjct: 402 VQEMQKRGIEPNAITYSTIISIWGKAGKLDRAAMLF 437
>gi|449443726|ref|XP_004139628.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
chloroplastic-like [Cucumis sativus]
Length = 456
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 37 NDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISF 96
+D +KP N + Y+ I G+AKMF EM+ IL + +D P+ + +
Sbjct: 195 SDMVTRGIKP---NTITYNTFIDAYGKAKMFAEMESILVDMLNDDGCKPDVWTMNSTLRA 251
Query: 97 YGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRM 141
+GR+ LE + +++ +Q ++++ N LL++ ++M
Sbjct: 252 FGRSGQLETMEKCYEKFQEAGIQPSIQTFNILLDSYGKAESYEKM 296
>gi|414587035|tpg|DAA37606.1| TPA: hypothetical protein ZEAMMB73_100135 [Zea mays]
Length = 547
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 46/82 (56%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+ + +++++ L RAK ++ ++L +L+ D +P + + +VIS Y +A +E A+ V
Sbjct: 249 DTITHNILVDGLCRAKQVNKGHEVLRRLQRDGVCMPNAVTYTSVISGYCKAGKMEDAMSV 308
Query: 110 FDEMPSFNVQRTVKSLNTLLNA 131
+++M + + N L+N
Sbjct: 309 YNDMLESGTRPNTVTYNVLING 330
>gi|145360404|ref|NP_180348.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546772|sp|Q9ZUY1.2|PP173_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g27800, mitochondrial; Flags: Precursor
gi|330252952|gb|AEC08046.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 442
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 13/132 (9%)
Query: 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMF 67
+P LA + L++ P L LF N P F + Y + I KLG AKM+
Sbjct: 138 TPEELADAITLEEDPFLCFHLF-------NWASQQP--RFTHENCSYHIAIRKLGAAKMY 188
Query: 68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPS---FNVQRTVKS 124
EM I++Q+ R I E ++ ++I ++ +A L A+ +F M + + T+++
Sbjct: 189 QEMDDIVNQVL-SVRHIGNENLYNSIIFYFTKAGKLIRAVNIFRHMVTSKNLECRPTIRT 247
Query: 125 LNTLLNALLTCG 136
+ L ALL G
Sbjct: 248 YHILFKALLGRG 259
>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 839
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 12 LASLLHLQKHPKLALQLFK-NPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEM 70
S+ ++QK + Q+ K P+PN ++ Y++II + +
Sbjct: 422 FCSIGYIQKATAIFDQMLKAGPSPN---------------VITYNIIIHIYFKQGYMNNA 466
Query: 71 QQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLN 130
++L +K + + + + N+IS + R LEHA +F+EM + V + N ++N
Sbjct: 467 MRLLEMMKGNGLKL-DTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIIN 525
Query: 131 ALLTCGKLDRMKELF 145
LT K+D LF
Sbjct: 526 GYLTVAKVDDALALF 540
>gi|404357745|gb|AFR63865.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357757|gb|AFR63871.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
Length = 187
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 70 MQQILHQLKHDTRVIPEEI-----IFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKS 124
M L RV E + + +V++ Y +A L++HA ++FDEMP +R V S
Sbjct: 10 MYSSCGDLSSALRVFDESVSRDLPAWNSVVNAYAKAGLIDHARKLFDEMP----ERNVIS 65
Query: 125 LNTLLNALLTCGKLDRMKELF 145
+ L+N + CGK +LF
Sbjct: 66 WSCLINGYVMCGKYKEALDLF 86
>gi|297743170|emb|CBI36037.3| unnamed protein product [Vitis vinifera]
Length = 646
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 54/97 (55%), Gaps = 9/97 (9%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCN--VISFYGRARLLEHALQVFD 111
Y+ +++ LG+ K ++ + ++K D P IF +IS +GRA +E A+++F+
Sbjct: 440 YNTVLSALGKLKKTSDLHDLYEKMKQDG---PSPDIFSYNILISSFGRAGRVEEAVKIFE 496
Query: 112 EMPSFNVQRTVKSLNTLLNALLTCGKLD----RMKEL 144
E+ + + + + S N+L+N L G +D R KE+
Sbjct: 497 ELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEM 533
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 40 EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR 99
E KP +++ ++ +I LG+ DE +++ + + P+ + + +I +G+
Sbjct: 499 ENSSCKP---DIISFNSLINCLGKNGDIDEAHMRFKEMREEG-LSPDVVTYSTLIECFGK 554
Query: 100 ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+E A ++FDEM + + + N LL+ L G+ +L+
Sbjct: 555 TDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLY 600
>gi|255582955|ref|XP_002532248.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528066|gb|EEF30142.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 521
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 72/148 (48%), Gaps = 11/148 (7%)
Query: 3 KAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLG 62
K K S +L+ +K P+ AL++F K F +N Y +I KL
Sbjct: 53 KCKFISHESAINLIKREKDPQHALEIFNMVGEQ---------KGFNHNHATYSTLIHKLA 103
Query: 63 RAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM-PSFNVQRT 121
+ K F + +LHQ+ ++T E IF N++ + ++ L E L++F + P + +
Sbjct: 104 QTKKFHAVDALLHQMTYETCKFHEN-IFLNLMKHFYKSSLHERVLEMFYAIQPIVREKPS 162
Query: 122 VKSLNTLLNALLTCGKLDRMKELFISFN 149
+K+++T LN L+ ++D ++ + N
Sbjct: 163 LKAISTCLNILVESKQIDLAQKCLLYVN 190
>gi|3860252|gb|AAC73020.1| hypothetical protein [Arabidopsis thaliana]
Length = 427
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 13/132 (9%)
Query: 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMF 67
+P LA + L++ P L LF N P F + Y + I KLG AKM+
Sbjct: 123 TPEELADAITLEEDPFLCFHLF-------NWASQQP--RFTHENCSYHIAIRKLGAAKMY 173
Query: 68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPS---FNVQRTVKS 124
EM I++Q+ R I E ++ ++I ++ +A L A+ +F M + + T+++
Sbjct: 174 QEMDDIVNQVL-SVRHIGNENLYNSIIFYFTKAGKLIRAVNIFRHMVTSKNLECRPTIRT 232
Query: 125 LNTLLNALLTCG 136
+ L ALL G
Sbjct: 233 YHILFKALLGRG 244
>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 669
Score = 46.2 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 58/122 (47%), Gaps = 9/122 (7%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+ +++ Y ++ L A+ +D+++ + ++ D + +P E+ F ++ F+ R ++E A
Sbjct: 242 FQPDIVSYTTVLKGLCAARRWDDVKVLFAEMV-DKKCVPNEVTFDMLVRFFCRGGMVERA 300
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA--------IAVLDG 158
+QV +M N ++NA+ G++D + + + VL G
Sbjct: 301 IQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRG 360
Query: 159 LC 160
LC
Sbjct: 361 LC 362
Score = 39.7 bits (91), Expect = 0.45, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+ + Y ++ L RA ++ +++L ++ P E+ F I + L+E A+++
Sbjct: 350 DTISYTTVLRGLCRAGRWEHAKELLPEMVRKN-CPPNEVTFNTFICILCQKGLIEQAIKL 408
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF-----NLKAIAVLDGLC 160
+ MP + + + N L++ G++D ELF + + +L GLC
Sbjct: 409 IELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLPCEPNTITYTTLLTGLC 464
>gi|302774917|ref|XP_002970875.1| hypothetical protein SELMODRAFT_62785 [Selaginella moellendorffii]
gi|300161586|gb|EFJ28201.1| hypothetical protein SELMODRAFT_62785 [Selaginella moellendorffii]
Length = 273
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
Query: 22 PKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT 81
P++AL+L+ + F ++L+ Y++II LG+ DE + +LK +
Sbjct: 152 PEVALELYYDLKAAGG---------FVHDLITYNIIIDLLGKVGKVDEAWKAFEELKLEQ 202
Query: 82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDR 140
R++P+ + ++ + L+ ++ EM NV S L+ A G +D+
Sbjct: 203 RLVPDHYTYNTIVVRMAKVGRLQACFELIKEMEGRNVSLDRSSYCNLVEAFGRAGHIDQ 261
>gi|125524465|gb|EAY72579.1| hypothetical protein OsI_00445 [Oryza sativa Indica Group]
Length = 1014
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 9/121 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+ +I KL + + FD+ ++ ++ + P E+ + +I + ++E AL +
Sbjct: 337 NVFAYNALIDKLCKNERFDDADRLFKEMA-GRGLEPNEVTYAILIHALCKRGMIEDALCL 395
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA--------VLDGLCS 161
FD+M ++ TV N+L+N G LDR + L + + ++ GLC
Sbjct: 396 FDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCR 455
Query: 162 N 162
N
Sbjct: 456 N 456
>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
Length = 855
Score = 46.2 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 70 MQQILHQLK--HDTRVIPEEIIFCN-VISFYGRARLLEHALQVFDEMPSFNVQRTVKSLN 126
M++ L LK H T ++P+ ++ CN V++ +AR ++ A+++F EMPS + T+ S N
Sbjct: 1 MEEALDCLKEMHTTGLMPD-VVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYN 59
Query: 127 TLLNALLTCGKLDRMKELFIS 147
T+++ L + K+D + F S
Sbjct: 60 TVISGLASIDKMDEAYKFFNS 80
>gi|255660904|gb|ACU25621.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
Length = 484
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
++LH K + ALQ F+ E L F +N + II LGRA + + I
Sbjct: 17 NVLHSAKTSEHALQFFRW-------VERSNL--FEHNRETHLKIIEILGRASKLNHARCI 67
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L + E++ + +I YG+ +++ ++++F +M V+RT+KS N L A+L
Sbjct: 68 LLDMPKKGLEWDEDM-WVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKAIL 126
Query: 134 TCGKLDRMKELF 145
G+ K F
Sbjct: 127 RRGRYMMAKRYF 138
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD--- 139
+ P+ + + +I+ Y R + +E A + F EM N++ TV + TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 140 RMKELFISFNLKAIAV-----LDGLCSNLKII 166
R+ E F +K A+ L GLC+ K+I
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAGKMI 272
Score = 36.2 bits (82), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I R K +E ++ ++K + P + + +I Y ++ AL++
Sbjct: 184 DVVTYNTMINGYYRVKKMEEAEKYFVEMK-GRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKL 138
+EM F ++ + +TLL L GK+
Sbjct: 243 VEEMKGFGIKPNAITYSTLLPGLCNAGKM 271
>gi|125569067|gb|EAZ10582.1| hypothetical protein OsJ_00414 [Oryza sativa Japonica Group]
Length = 1003
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 9/121 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+ +I KL + + FD+ ++ ++ + P E+ + +I + ++E AL +
Sbjct: 337 NVFAYNALIDKLCKNERFDDADRLFKEMA-GRGLEPNEVTYAILIHALCKRGMIEDALCL 395
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA--------VLDGLCS 161
FD+M ++ TV N+L+N G LDR + L + + ++ GLC
Sbjct: 396 FDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCR 455
Query: 162 N 162
N
Sbjct: 456 N 456
>gi|326525465|dbj|BAJ88779.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 680
Score = 46.2 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 58/122 (47%), Gaps = 9/122 (7%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+ +++ Y ++ L A+ +D+++ + ++ D + +P E+ F ++ F+ R ++E A
Sbjct: 253 FQPDIVSYTTVLKGLCAARRWDDVKVLFAEMV-DKKCVPNEVTFDMLVRFFCRGGMVERA 311
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA--------IAVLDG 158
+QV +M N ++NA+ G++D + + + VL G
Sbjct: 312 IQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRG 371
Query: 159 LC 160
LC
Sbjct: 372 LC 373
Score = 39.7 bits (91), Expect = 0.48, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+ + Y ++ L RA ++ +++L ++ P E+ F I + L+E A+++
Sbjct: 361 DTISYTTVLRGLCRAGRWEHAKELLPEMVRKN-CPPNEVTFNTFICILCQKGLIEQAIKL 419
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF-----NLKAIAVLDGLC 160
+ MP + + + N L++ G++D ELF + + +L GLC
Sbjct: 420 IELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLPCEPNTITYTTLLTGLC 475
>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 729
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N+ ++++ L + +++ L Q++ + V P+ + + +IS Y L+E A ++
Sbjct: 234 NVYTLNIMVNALCKDGKMEKVGTFLSQVQ-EKGVYPDIVTYNTLISAYSSKGLMEEAFEL 292
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ MP V + NT++N L GK +R KE+F
Sbjct: 293 MNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVF 328
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ I+ L + KM E ++ +++ + + P+ +I + + L++A+++
Sbjct: 444 DVVTYNTILHGLCKRKMLGEADKLFNEMT-ERALFPDSYTLTILIDGHCKLGNLQNAMEL 502
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153
F +M ++ V + NTLL+ G +D KE++ K I
Sbjct: 503 FQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEI 546
>gi|226509110|ref|NP_001150970.1| vegetative storage protein [Zea mays]
gi|195643272|gb|ACG41104.1| vegetative storage protein [Zea mays]
Length = 322
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 5/125 (4%)
Query: 41 APPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRA 100
++P Y+L L +G++ + + +K +R + + ++ V+ Y R
Sbjct: 113 GSGVQPNGYSLSGGLLACAGVGQSALVHGKEIHASVVKMSSRGLVDPVVENGVLGMYSRC 172
Query: 101 RLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLC 160
+E+AL+VF MP R + + N+++ ALL G+ + LF+S + V DG
Sbjct: 173 GSMEYALRVFRAMP----VRNIVAWNSMMAALLGSGQAEDALRLFVSMVSSGVGV-DGFS 227
Query: 161 SNLKI 165
++ +
Sbjct: 228 LSIAV 232
>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Vitis vinifera]
Length = 644
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
Query: 32 PNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFC 91
P P+ A + ++ + +I + F + Q+ ++K + RV E+ F
Sbjct: 45 PIPDQIFKSASQMGSYKSGDSTFYSLIENYANSGDFGTLFQVFDRMKRERRVFIEKN-FI 103
Query: 92 NVISFYGRARLLEHALQVFDEM-PSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
V YG+A L E A+++F M F +RTV+S N++LN ++ G R E +
Sbjct: 104 LVFRAYGKAHLPEKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFY 158
>gi|15240444|ref|NP_198063.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635756|sp|O04659.2|PP398_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g27110
gi|332006268|gb|AED93651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 691
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 70 MQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL 129
+ +++H L + + + ++ +++ Y + L E++LQVFDEMP +R V S NT++
Sbjct: 125 LGRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMP----ERDVASWNTVI 180
Query: 130 NALLTCGKLDRMKELF 145
+ G+ ++ ELF
Sbjct: 181 SCFYQSGEAEKALELF 196
>gi|356512664|ref|XP_003525037.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74750-like [Glycine max]
Length = 873
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
FR++ Y ++ LGRA+ FD + ++L Q+ D P + + +I YG A L+ A
Sbjct: 373 FRHDGHTYTTMVGILGRARRFDSISKLLEQMVKDG-CQPNVVTYNRLIHCYGCANYLKEA 431
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD-------RMKELFIS 147
L VF+EM + + TL++ G +D RM+E +S
Sbjct: 432 LNVFNEMQEVGCEPDRVTYCTLIDIHAKAGFIDVAMSMYKRMQEAGLS 479
Score = 37.4 bits (85), Expect = 2.7, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 59/118 (50%), Gaps = 7/118 (5%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+ + + Y +++ LG +E + + +++ V P+E ++ ++ +G+A +E A
Sbjct: 548 FQPDKVTYSIVMEALGHCGYLEEAESVFVEMQQKNWV-PDEPVYGLLVDLWGKAGNVEKA 606
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLK 164
+ + M + + V + N+LL+A L R+ L ++NL V GL +L+
Sbjct: 607 SEWYQAMLNAGLLPNVPTCNSLLSAFL------RLHRLPDAYNLVQSMVALGLRPSLQ 658
>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 590
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 9/120 (7%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I + K FDE + ++ H +IP+ + + ++I ++ + +ALQ+ D+M
Sbjct: 368 YSIMINGFCKIKKFDEAMNLFKEM-HRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQM 426
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA--------VLDGLCSNLKI 165
V + + N++L+AL ++D+ L F K ++ GLC + K+
Sbjct: 427 HDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKL 486
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 58/119 (48%), Gaps = 9/119 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ II + + K+ +E + ++ + P+ + + +IS + L+ A+ +
Sbjct: 224 NVVMYNTIIDSMCKVKLVNEAFDLFSEMV-SKGISPDVVTYSALISGFCILGKLKDAIDL 282
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLC 160
F++M N++ V + N L+NA GK+ K +F + I +++DG C
Sbjct: 283 FNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYC 341
>gi|356575428|ref|XP_003555843.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g59040-like [Glycine max]
Length = 562
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 64 AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVK 123
+ ++D+MQ + D R P+ + + ++S YG+AR E AL VF+EM ++ T K
Sbjct: 296 SNIYDQMQ------RADLR--PDVVSYALLVSAYGKARREEEALAVFEEMLDAGIRPTRK 347
Query: 124 SLNTLLNALLTCGKLDRMKELFIS 147
+ N LL+A G +++ + +F S
Sbjct: 348 AYNILLDAFSISGMVEQAQTVFKS 371
>gi|326499175|dbj|BAK06078.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 566
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 47/85 (55%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+++++ L RAK + +++L +L+ D +P + + +VIS Y +A +E A+ V+++M
Sbjct: 272 HNILVNGLCRAKEVSKGREVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDAMAVYNDM 331
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKL 138
+ V + N L+N G +
Sbjct: 332 VAVGTSPNVVTYNVLINGYGKAGNM 356
>gi|357432726|gb|AET79040.1| At3g62890-like protein [Arabidopsis halleri]
gi|357432730|gb|AET79042.1| At3g62890-like protein [Arabidopsis halleri]
gi|357432732|gb|AET79043.1| At3g62890-like protein [Arabidopsis halleri]
gi|357432736|gb|AET79045.1| At3g62890-like protein [Arabidopsis halleri]
gi|357432740|gb|AET79047.1| At3g62890-like protein [Arabidopsis halleri]
Length = 151
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 92 NVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+VI+ Y +A L++HA ++FDEMP +R V S + L+N + CGK +LF
Sbjct: 18 SVINAYAKAGLIDHARKLFDEMP----ERNVISWSCLINGYVLCGKYKEALDLF 67
>gi|413921612|gb|AFW61544.1| hypothetical protein ZEAMMB73_526638 [Zea mays]
Length = 456
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 90 FCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN 149
F VIS YG +RL + A++VF+ +P F +T + N LL+AL G +L
Sbjct: 147 FSAVISSYGHSRLPDQAVEVFNRLPRFGCPQTTEVYNALLDALCANGNFTGAYKLLRRMA 206
Query: 150 LKAIA--------VLDGLCSNLKI 165
K +A ++D C+ K+
Sbjct: 207 RKGVAPDRATFSTLVDSWCAAGKL 230
>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 504
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 17/128 (13%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y L+I L DE +Q+ + P+ + + +I+ Y +++ +EH +++
Sbjct: 290 DIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKG-CFPDVVTYSILINGYCKSKKVEHGMKL 348
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF------------ISFNLKAIAVLD 157
F EM V R + L+ GKL+ +E+F I++N+ +L
Sbjct: 349 FCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNV----LLH 404
Query: 158 GLCSNLKI 165
GLC N KI
Sbjct: 405 GLCDNGKI 412
>gi|147845950|emb|CAN82028.1| hypothetical protein VITISV_000613 [Vitis vinifera]
Length = 790
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 54/97 (55%), Gaps = 9/97 (9%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCN--VISFYGRARLLEHALQVFD 111
Y+ +++ LG+ K ++ + ++K D P IF +IS +GRA +E A+++F+
Sbjct: 504 YNTVLSALGKLKKTSDLHDLYEKMKQDG---PSPDIFSYNILISSFGRAGRVEEAVKIFE 560
Query: 112 EMPSFNVQRTVKSLNTLLNALLTCGKLD----RMKEL 144
E+ + + + + S N+L+N L G +D R KE+
Sbjct: 561 ELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEM 597
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 40 EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR 99
E KP +++ ++ +I LG+ DE +++ + + P+ + + +I +G+
Sbjct: 563 ENSSCKP---DIISFNSLINCLGKNGDIDEAHMRFKEMREEG-LSPDVVTYSTLIECFGK 618
Query: 100 ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+E A ++FDEM + + + N LL+ L G+ +L+
Sbjct: 619 TDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLY 664
>gi|359496995|ref|XP_003635394.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g65820-like [Vitis vinifera]
Length = 622
Score = 45.8 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 53/117 (45%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
+R++ Y +I LG+ + F + ++ +++ + +F ++ + AR+++ A
Sbjct: 118 YRHSYEVYKAMIKILGKMRQFGAVWALIEEMRRENPQFVSPYVFVVLMRRFASARMVKKA 177
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNL 163
++V DEMP + + LL+AL G + LF ++ L S L
Sbjct: 178 IEVLDEMPKYGCEPDEHVFGCLLDALCKNGSVKEAASLFEDMRIRFTPTLKHFTSLL 234
>gi|225425882|ref|XP_002266563.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
mitochondrial [Vitis vinifera]
Length = 496
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 68/144 (47%), Gaps = 12/144 (8%)
Query: 4 AKPTSPFRLASLLH-LQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLG 62
A P S + LLH + K AL LF+ AP YD+++ LG
Sbjct: 73 AIPMSQNLVDVLLHRFKDDWKSALGLFRWAESRLGYEHAPEA---------YDMMVDILG 123
Query: 63 RAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTV 122
+ K D+M+ ++ +++ V + + A E A++VFD++ +F +++
Sbjct: 124 KLKQVDKMRALMEEMRQGNLVRLSTVA--KAMRRLAGAGEWEDAVRVFDDLGNFELEKNT 181
Query: 123 KSLNTLLNALLTCGKLDRMKELFI 146
+S+N LL+ L K+++ + +F+
Sbjct: 182 ESMNLLLDTLCKERKVEQARAIFL 205
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 37 NDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISF 96
+D +A P N++ Y I+ L + + F+E QI +++ P+ + + +I
Sbjct: 274 DDMQAQGCAP---NVVTYTTIMCSLTKVEQFEEALQIAERMR-SVGCKPDTLFYNALIHT 329
Query: 97 YGRARLLEHALQVFD-EMPSFNVQRTVKSLNTLL 129
GRA L A++VF+ EMP V + N+++
Sbjct: 330 LGRAGQLREAVRVFEVEMPKTGVPPNTSTYNSMI 363
>gi|71661290|ref|XP_817668.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70882874|gb|EAN95817.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 994
Score = 45.8 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 58/102 (56%), Gaps = 5/102 (4%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP-EEIIFCNVISFYGRARLL 103
K + N + ++++ GRA+ F+ M++I+ Q K + IP +++I+C + + YGRARL
Sbjct: 766 KGYTNNAVTHNILADGYGRARRFERMEEIVQQRK--SSGIPMDDLIYCIMATSYGRARLK 823
Query: 104 EHALQVFDEMPSFNVQR--TVKSLNTLLNALLTCGKLDRMKE 143
+ +++ E+ S + T K + + ++A C D M++
Sbjct: 824 KEVHRLYTEVTSPTSRHLFTRKVIWSFIDAFCRCAAPDDMEK 865
>gi|147742767|gb|ABQ50548.1| hypothetical protein [Brassica rapa]
Length = 229
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 8/121 (6%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+ + Y+ +I L DE Q++ + P+ + F +I+ Y +A+L++ ++V
Sbjct: 9 DTITYNSLIDGLCIENRLDEANQMVDVVMVSKGCDPDIVTFNILINGYCKAKLVDEGMRV 68
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF---ISFNLKAIAV-----LDGLCS 161
F E+ + + NTL+ GKLD KELF +S + V LDGLC
Sbjct: 69 FREISLRGLVADTVTYNTLVQGFCEAGKLDVAKELFQEMVSQGARPDIVTYRILLDGLCD 128
Query: 162 N 162
N
Sbjct: 129 N 129
>gi|303280720|ref|XP_003059652.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458307|gb|EEH55604.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 196
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 11/126 (8%)
Query: 20 KHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKH 79
+ K AL++F+ A EA N+ Y +I+ + K D+ +I K
Sbjct: 41 RQWKKALEVFEEMR--AEGVEA--------NIYTYSALISACAKGKQLDKALEIFELCKV 90
Query: 80 DTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD 139
+ V P+ I + +IS + R ++ AL++F +M ++ + N LL A GK D
Sbjct: 91 NG-VEPDGITYGAMISACEKGRRVDKALEIFVQMKKAGMEANAITYNALLAACERAGKAD 149
Query: 140 RMKELF 145
+E+F
Sbjct: 150 DAREVF 155
>gi|302772380|ref|XP_002969608.1| hypothetical protein SELMODRAFT_91676 [Selaginella moellendorffii]
gi|300163084|gb|EFJ29696.1| hypothetical protein SELMODRAFT_91676 [Selaginella moellendorffii]
Length = 408
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
Query: 22 PKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT 81
P++AL+L+ + F ++L+ Y++II LG+ DE + +LK +
Sbjct: 242 PEVALELYYDLKAAGG---------FVHDLITYNIIIDLLGKVGKVDEAWKAFEELKLEQ 292
Query: 82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDR 140
R++P+ + ++ + L+ ++ EM NV S L+ A G +D+
Sbjct: 293 RLVPDHYTYNTIVVRMAKVGRLQACFELIKEMEGRNVSLDRSSYCNLVEAFGRAGHIDQ 351
>gi|15227316|ref|NP_179280.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75217061|sp|Q9ZVX5.1|PP156_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g16880
gi|3757517|gb|AAC64219.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|18175643|gb|AAL59902.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|20465657|gb|AAM20297.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330251452|gb|AEC06546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 743
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
K + N + + I+ L + + DE +L+ H I +E+ + +I + R +E
Sbjct: 445 KGIKMNTITLNTILDALCKERKLDEAHNLLNS-AHKRGFIVDEVTYGTLIMGFFREEKVE 503
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
AL+++DEM + TV + N+L+ L GK + E F
Sbjct: 504 KALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKF 544
>gi|326490553|dbj|BAJ84940.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 856
Score = 45.8 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+++ Y +I LG+AK F M+++L ++ P + + +I YGRA L A
Sbjct: 359 FKHDGHTYTTMIGILGQAKQFGTMRKLLDEMS-SVNCKPTVVTYNRIIHAYGRANYLREA 417
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD-------RMKELFIS 147
++VF+EM Q + TL++ G L+ RM+E+ +S
Sbjct: 418 VKVFEEMEGAGYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLS 465
Score = 43.1 bits (100), Expect = 0.042, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
FR + + Y +++ LG DE + + +++ D P+E ++ ++ +G+A ++ A
Sbjct: 534 FRPDKITYSIVMEVLGHCGHLDEAEAVFLEMRRDW--APDEPVYGLLVDLWGKAGNVDKA 591
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
L + M +Q V + N+LL+A L KL+R ++ +
Sbjct: 592 LGWYHAMLQDGLQPNVPTCNSLLSAFL---KLNRFQDAY 627
>gi|224115398|ref|XP_002317023.1| predicted protein [Populus trichocarpa]
gi|222860088|gb|EEE97635.1| predicted protein [Populus trichocarpa]
Length = 455
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEI---IFCNVISFYGR 99
P K F N++ Y++I+ L ++E Q+L ++ + R P + I ++F+GR
Sbjct: 152 PSKGFNPNVVSYNIILRSLCHEGRWEEANQLLAEMDSEERS-PSLVTYNILIGSLAFHGR 210
Query: 100 ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD 139
+EHA +V DEM + + + + N ++ L GKLD
Sbjct: 211 ---IEHAFEVLDEMVRASFKPSATTYNPIIAHLCKEGKLD 247
>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 917
Score = 45.8 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 13/151 (8%)
Query: 23 KLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR 82
K+AL+L KN +DT +P + N + Y +II L + DE +++ ++K
Sbjct: 615 KIALELHKN---MLSDT-SPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKA-LG 669
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMK 142
VIP+ I + ++I + R+ + A +F+EM VQ V + + L++ L GK+
Sbjct: 670 VIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEAN 729
Query: 143 ELF--------ISFNLKAIAVLDGLCSNLKI 165
EL I + ++ GLC N +I
Sbjct: 730 ELLEVMIQRGCIPNTVTYTTLVKGLCMNDRI 760
Score = 40.0 bits (92), Expect = 0.34, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+ +++ Y +II L + DE +++ ++K VIP I + ++I + R+ LE A
Sbjct: 816 FKPDVISYSIIIDGLCKHGREDEARELFKEMKA-LGVIPNVISYTSLIHGFCRSGKLEDA 874
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDR 140
+F+EM VQ + + +++ G++D+
Sbjct: 875 KHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDK 908
Score = 35.4 bits (80), Expect = 9.5, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 5/122 (4%)
Query: 24 LALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRV 83
+ALQL + NDT +K + L+ Y +II L + + DE +++ ++K +
Sbjct: 435 IALQLHQE---MLNDTGRYGIK-CKPTLISYSIIIDGLCKDRREDEARELFEEMKAQG-I 489
Query: 84 IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKE 143
+P+ I + +I + + E A +F+EM +Q V + + L++ L GK+ +
Sbjct: 490 MPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANK 549
Query: 144 LF 145
L
Sbjct: 550 LL 551
>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
Length = 1037
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 61/124 (49%), Gaps = 8/124 (6%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
K N++ Y L+I + DE +++L ++ + ++P+E + +I Y R ++
Sbjct: 290 KGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKID 349
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF---ISFNLKAIA-----VL 156
A+++ DEM ++ + N+L+N G++ + + + +NLK + +L
Sbjct: 350 DAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLL 409
Query: 157 DGLC 160
DG C
Sbjct: 410 DGYC 413
Score = 42.4 bits (98), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 27/143 (18%)
Query: 13 ASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQ 72
A L +L+ +P +L F+ + N FR N+ Y ++ L R +M+DE +
Sbjct: 73 AVLRNLRLNPTASLGFFQFVSKQQN---------FRPNVKSYCKLVHILSRGRMYDETRA 123
Query: 73 ILHQL------KHDTRVIPEEII------------FCNVISFYGRARLLEHALQVFDEMP 114
L+QL K VI +E++ F ++ Y L ++AL VFD M
Sbjct: 124 YLNQLVDLCKFKDRGNVIWDELVGVYREFAFSPTVFDMILKVYVEKGLTKNALYVFDNMG 183
Query: 115 SFNVQRTVKSLNTLLNALLTCGK 137
+++S N+LLN L+ G+
Sbjct: 184 KCGRIPSLRSCNSLLNNLVKNGE 206
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 9/119 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N + Y++ I L + D+ ++ L +P+ +C +I Y A ++ A ++
Sbjct: 713 NNIVYNIAIAGLCKTGKVDDARRFFSMLSLKG-FVPDNFTYCTLIHGYSAAGNVDEAFRL 771
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLC 160
DEM + + + N L+N L +DR + LF + K + ++DG C
Sbjct: 772 RDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYC 830
Score = 40.0 bits (92), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I L +++ D Q++ H+L H + P + + +I Y + ++ A ++
Sbjct: 783 NIVTYNALINGLCKSENVDRAQRLFHKL-HQKGLFPNVVTYNTLIDGYCKIGNMDAAFKL 841
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
D+M + +V + + L+N L G ++R +L
Sbjct: 842 KDKMIEEGISPSVVTYSALINGLCKHGDIERSMKL 876
>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Cucumis sativus]
Length = 761
Score = 45.8 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 13/151 (8%)
Query: 23 KLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR 82
K+AL+L KN +DT +P + N + Y +II L + DE +++ ++K
Sbjct: 459 KIALELHKN---MLSDT-SPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKA-LG 513
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMK 142
VIP+ I + ++I + R+ + A +F+EM VQ V + + L++ L GK+
Sbjct: 514 VIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEAN 573
Query: 143 ELF--------ISFNLKAIAVLDGLCSNLKI 165
EL I + ++ GLC N +I
Sbjct: 574 ELLEVMIQRGCIPNTVTYTTLVKGLCMNDRI 604
Score = 40.0 bits (92), Expect = 0.34, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+ +++ Y +II L + DE +++ ++K VIP I + ++I + R+ LE A
Sbjct: 660 FKPDVISYSIIIDGLCKHGREDEARELFKEMKA-LGVIPNVISYTSLIHGFCRSGKLEDA 718
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDR 140
+F+EM VQ + + +++ G++D+
Sbjct: 719 KHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDK 752
Score = 37.7 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
Query: 37 NDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISF 96
NDT +K + L+ Y +II L + + DE +++ ++K ++P+ I + ++I
Sbjct: 108 NDTSQYGIK-CKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQG-MMPDVISYTSLIHG 165
Query: 97 YGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ R+ E A +F+EM ++ V + + L++ L GK+ EL
Sbjct: 166 FCRSGKWEKAKCLFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELL 214
>gi|147767159|emb|CAN71515.1| hypothetical protein VITISV_021787 [Vitis vinifera]
Length = 655
Score = 45.8 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 53/117 (45%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
+R++ Y +I LG+ + F + ++ +++ + +F ++ + AR+++ A
Sbjct: 151 YRHSYEVYKAMIKILGKMRQFGAVWALIEEMRRENPQFVSPYVFVVLMRRFASARMVKKA 210
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNL 163
++V DEMP + + LL+AL G + LF ++ L S L
Sbjct: 211 IEVLDEMPKYGCEPDEHVFGCLLDALCKNGSVKEAASLFEDMRIRFTPTLKHFTSLL 267
>gi|224085950|ref|XP_002307751.1| predicted protein [Populus trichocarpa]
gi|222857200|gb|EEE94747.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Query: 52 LHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFD 111
+ + ++I+ L R + + Q+ LK + P+ I++ N++ + RA + A +VF
Sbjct: 165 IAFSILISILCRERRASQAQEFFDSLKD--KFEPDVIVYTNLVRGWCRAGNISEAERVFG 222
Query: 112 EMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMN 168
EM ++ V + + ++++L CG++ R ++F +LD C I N
Sbjct: 223 EMKVAGIKPNVYTYSIVIDSLCRCGQITRAHDIFAE-------MLDAGCQPNSITYN 272
>gi|224069810|ref|XP_002303045.1| predicted protein [Populus trichocarpa]
gi|222844771|gb|EEE82318.1| predicted protein [Populus trichocarpa]
Length = 388
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 37 NDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISF 96
+D E+ ++P N + Y+ +I G+AKMF EM+ L ++ P+ + I
Sbjct: 125 SDMESLGIRP---NTVTYNTVIDAYGKAKMFAEMEATLMEMLSQQDCEPDVWTMNSTIRA 181
Query: 97 YGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRM 141
+G + +E +++ S ++ +K+ N LL++ G +M
Sbjct: 182 FGGSGQMEMMENCYEKFQSAGIEPNIKTFNILLDSYGKAGNYQKM 226
>gi|255549794|ref|XP_002515948.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544853|gb|EEF46368.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 706
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
K + + Y+ + T LGR K + + ++K D +P+ + +IS +GRA +
Sbjct: 278 KGINTDTIMYNTVFTALGRLKQISHLYDLYEKMKLDG-PLPDIFTYNILISSFGRAGKVY 336
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD 139
A+++F+E+ + + + + S N+L+N L G LD
Sbjct: 337 EAIKIFEELENSDCKPDIISYNSLINCLGKNGDLD 371
>gi|449460469|ref|XP_004147968.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g30780-like [Cucumis sativus]
gi|449494249|ref|XP_004159492.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g30780-like [Cucumis sativus]
Length = 514
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 56/139 (40%), Gaps = 17/139 (12%)
Query: 19 QKHPKLALQLF---KNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILH 75
KH LA+ LF N A T + F +N L D+ +
Sbjct: 168 SKHIDLAVGLFNEASNKRVKATSTYNALMGVFMFNGLA--------------DKCNSVFR 213
Query: 76 QLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTC 135
LK D +P + + +IS +GR L++H E+ + N+ V + N+L+ +T
Sbjct: 214 DLKRDAGCVPNIVTYNILISVFGRLMLVDHMEATMREIHNLNLSPNVNTYNSLIAGYITA 273
Query: 136 GKLDRMKELFISFNLKAIA 154
RM++ F+ +I
Sbjct: 274 WMWKRMEQAFMKMKASSIT 292
>gi|302780493|ref|XP_002972021.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
gi|300160320|gb|EFJ26938.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
Length = 2052
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I L R KM ++ Q++L L H+ + + + +I+ + +A +++ A+ +F EM
Sbjct: 1844 YTVVIDALLRVKMDEQAQKVL-DLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEM 1902
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153
P+ V + N++++ GK++ +LF + I
Sbjct: 1903 PTRGCIPDVVTYNSIVDGFCKAGKVEEANKLFAEMKARGI 1942
>gi|356562783|ref|XP_003549648.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Glycine max]
Length = 859
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 39/117 (33%), Positives = 52/117 (44%), Gaps = 11/117 (9%)
Query: 39 TEAPP-------LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVI---PEEI 88
T PP L PF+ L D + A+ D Q+ L K+ R I P E
Sbjct: 79 TALPPRGSIARCLDPFKNKLSLNDFALVFKEFAQRGD-WQRSLRLFKYMQRQIWCKPNEH 137
Query: 89 IFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
I+ +I+ GR LL+ +VFDEMPS V RTV ++NA G+ EL
Sbjct: 138 IYTIMITLLGREGLLDKCREVFDEMPSNGVARTVYVYTAVINAYGRNGQFHASLELL 194
Score = 43.5 bits (101), Expect = 0.031, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+ +I G+ ++++ ++IL + ++ ++P + VI +G+A L E AL V
Sbjct: 416 NMETYEGLIFACGKGGLYEDAKKILLHM-NEKGIVPSSKAYTGVIEAFGQAALYEEALVV 474
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGK-------LDRMKE 143
F+ M TV++ N+ ++A G L RM E
Sbjct: 475 FNTMNEVGSNPTVETYNSFIHAFARGGLYKEAEAILSRMNE 515
Score = 37.4 bits (85), Expect = 2.4, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++IT LGR + D+ +++ ++ + V ++ VI+ YGR +L++ + M
Sbjct: 139 YTIMITLLGREGLLDKCREVFDEMPSNG-VARTVYVYTAVINAYGRNGQFHASLELLNGM 197
Query: 114 PSFNVQRTVKSLNTLLNA 131
V ++ + NT++NA
Sbjct: 198 KQERVSPSILTYNTVINA 215
>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like [Vitis vinifera]
Length = 939
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 61/124 (49%), Gaps = 8/124 (6%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
K N++ Y L+I + DE +++L ++ + ++P+E + +I Y R ++
Sbjct: 290 KGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKID 349
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF---ISFNLKAIA-----VL 156
A+++ DEM ++ + N+L+N G++ + + + +NLK + +L
Sbjct: 350 DAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLL 409
Query: 157 DGLC 160
DG C
Sbjct: 410 DGYC 413
Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 27/143 (18%)
Query: 13 ASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQ 72
A L +L+ +P +L F+ + N FR N+ Y ++ L R +M+DE +
Sbjct: 73 AVLRNLRLNPTASLGFFQFVSKQQN---------FRPNVKSYCKLVHILSRGRMYDETRA 123
Query: 73 ILHQL------KHDTRVIPEEII------------FCNVISFYGRARLLEHALQVFDEMP 114
L+QL K VI +E++ F ++ Y L ++AL VFD M
Sbjct: 124 YLNQLVDLCKFKDRGNVIWDELVGVYREFAFSPTVFDMILKVYVEKGLTKNALYVFDNMG 183
Query: 115 SFNVQRTVKSLNTLLNALLTCGK 137
+++S N+LLN L+ G+
Sbjct: 184 KCGRIPSLRSCNSLLNNLVKNGE 206
Score = 40.0 bits (92), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 9/119 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N + Y++ I L + D+ ++ L +P+ +C +I Y A ++ A ++
Sbjct: 713 NNIVYNIAIAGLCKTGKVDDARRFFSMLSLKG-FVPDNFTYCTLIHGYSAAGNVDEAFRL 771
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLC 160
DEM + + + N L+N L +DR + LF + K + ++DG C
Sbjct: 772 RDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYC 830
Score = 39.7 bits (91), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I L +++ D Q++ H+L H + P + + +I Y + ++ A ++
Sbjct: 783 NIVTYNALINGLCKSENVDRAQRLFHKL-HQKGLFPNVVTYNTLIDGYCKIGNMDAAFKL 841
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
D+M + +V + + L+N L G ++R +L
Sbjct: 842 KDKMIEEGISPSVVTYSALINGLCKHGDIERSMKL 876
>gi|242051953|ref|XP_002455122.1| hypothetical protein SORBIDRAFT_03g004720 [Sorghum bicolor]
gi|241927097|gb|EES00242.1| hypothetical protein SORBIDRAFT_03g004720 [Sorghum bicolor]
Length = 652
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 84 IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKE 143
+P + VI+ A ++ AL+VF +PS V+RT + N L AL + G+ D+++
Sbjct: 197 LPNARTYTVVIAHLASAGFVDQALEVFRILPSLRVRRTTRQYNVLAEALASTGRFDQLRW 256
Query: 144 LFISFNLKAIAVLDGL 159
L ++ +A +DG+
Sbjct: 257 L-----VREMAAVDGV 267
>gi|255586139|ref|XP_002533731.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526356|gb|EEF28650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 835
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
+ ++ + Y+ ++ G+A +F E +L +++ + P+ + + V++ Y RA E
Sbjct: 322 EGYKPGTVTYNALLHVFGKAGIFSEALSVLSEMEENN-CPPDAVTYNEVVAAYVRAGFHE 380
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
V D M S + + T++NA G +D+ E+F
Sbjct: 381 EGAVVIDAMASKGIMPNAVTYTTIINAYGRVGDIDKALEMF 421
Score = 42.7 bits (99), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+ ++ LG+ + +EM +IL +K + P I + +++ G+ + ++ QV
Sbjct: 432 NVATYNAVLGMLGKKSLSEEMMKILGHMKLNG-CSPNHITWNTMLAMCGKKGMHKYVNQV 490
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCG 136
F EM + + + NTL++A CG
Sbjct: 491 FREMKNCGFEPDRDTFNTLISAYGRCG 517
>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 527
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 9/121 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+++I +L ++K DE +L ++ H ++P + + ++I + + + AL +
Sbjct: 289 NVYSYNIMIDRLCKSKRVDEAMNLLREVLHKN-MVPNTVTYSSLIDGFCKLGRITSALDL 347
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLCS 161
EM V + +LL+AL LD+ LF+ + I A++DGLC
Sbjct: 348 LKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCK 407
Query: 162 N 162
Sbjct: 408 G 408
>gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera]
Length = 839
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 61/124 (49%), Gaps = 8/124 (6%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
K N++ Y L+I + DE +++L ++ + ++P+E + +I Y R ++
Sbjct: 256 KGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKID 315
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF---ISFNLKAIA-----VL 156
A+++ DEM ++ + N+L+N G++ + + + +NLK + +L
Sbjct: 316 DAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLL 375
Query: 157 DGLC 160
DG C
Sbjct: 376 DGYC 379
Score = 42.4 bits (98), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 27/143 (18%)
Query: 13 ASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQ 72
A L +L+ +P +L F+ + N FR N+ Y ++ L R +M+DE +
Sbjct: 39 AVLRNLRLNPTASLGFFQFVSKQQN---------FRPNVKSYCKLVHILSRGRMYDETRA 89
Query: 73 ILHQL------KHDTRVIPEEII------------FCNVISFYGRARLLEHALQVFDEMP 114
L+QL K VI +E++ F ++ Y L ++AL VFD M
Sbjct: 90 YLNQLVDLCKFKDRGNVIWDELVGVYREFAFSPTVFDMILKVYVEKGLTKNALYVFDNMG 149
Query: 115 SFNVQRTVKSLNTLLNALLTCGK 137
+++S N+LLN L+ G+
Sbjct: 150 KCGRIPSLRSCNSLLNNLVKNGE 172
Score = 39.7 bits (91), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 9/119 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N + Y++ I L + D+ ++ L +P+ +C +I Y A ++ A ++
Sbjct: 679 NNIVYNIAIAGLCKTGKVDDARRFFSMLSLKG-FVPDNFTYCTLIHGYSAAGNVDEAFRL 737
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLC 160
DEM + + + N L+N L +DR + LF + K + ++DG C
Sbjct: 738 RDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYC 796
>gi|162460162|ref|NP_001106062.1| pentatricopeptide repeat 5 [Zea mays]
gi|154520281|gb|ABS82814.1| pentatricopeptide repeat protein 5 [Zea mays]
gi|413924537|gb|AFW64469.1| pentatricopeptide repeat 5 [Zea mays]
Length = 499
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
R +++ ++++I GR + FD+M+Q+ L ++ P F ++I+ YGRARL E A
Sbjct: 266 RPDVITFNILIDSYGRKQTFDKMEQVFKSLLR-SKERPTHPTFNSMITNYGRARLREKAE 324
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
V ++M + + L+ C + + +++F
Sbjct: 325 SVVEKMEELGFKPNYVTQECLIIMYAHCDCVSKARQVF 362
>gi|326513138|dbj|BAK06809.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 637
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARL 102
P K ++ Y+++ + LG+ K + + ++K + + P+ + +IS YGR L
Sbjct: 420 PEKGVATDVGMYNMVFSALGKLKQVSFITSLFDKMKANG-IAPDLFTYNIMISSYGRVGL 478
Query: 103 LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
++ A +F++M + + + V + N+L+N L G LD LF
Sbjct: 479 VDKASGLFEDMNASSCKPDVITYNSLINCLGKNGDLDEAHMLF 521
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
K + ++ Y++++ L ++ M D+ Q+ +K P+ + +I GRA
Sbjct: 215 KGYMLDIFGYNMLLDALAKSGMVDQAYQVFEDMKQKY-CEPDAYTYTILIRMSGRAGKAS 273
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNAL 132
L FDEM S + + NTL+ AL
Sbjct: 274 KFLSFFDEMVSKGCALNLIAYNTLIEAL 301
>gi|357467093|ref|XP_003603831.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492879|gb|AES74082.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 530
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 52 LHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFD 111
+ + ++I+ L + + E + LKH + P+ I++ +++ + RA + A +VF
Sbjct: 214 VSFSIVISSLCKKRRASEAELFFDSLKH--KFEPDVIVYTSLVHGWCRAGDIAKAEEVFS 271
Query: 112 EMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+M V+ V + + ++++L CG++ R ++F
Sbjct: 272 DMKEAGVKPNVYTYSIVIDSLCRCGQITRAHDVF 305
>gi|293333312|ref|NP_001168014.1| uncharacterized protein LOC100381738 [Zea mays]
gi|223945505|gb|ACN26836.1| unknown [Zea mays]
Length = 462
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 59/124 (47%), Gaps = 14/124 (11%)
Query: 46 PFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEH 105
P R ++ Y+ + L A +D+ +++ + + +P E+ F +IS + L+
Sbjct: 308 PCRADIFSYNATLKGLCMAARWDDAGELIADMVTED-CLPNEVTFNILISSLCQKGLVNR 366
Query: 106 ALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF---------ISFNLKAIAVL 156
A+ V+++MP + + + + N L+N G+LD + IS+N ++L
Sbjct: 367 AIDVYEQMPKYGITPDIFTYNALINGYSEQGRLDDALKFLSTMPCEPDTISYN----SIL 422
Query: 157 DGLC 160
GLC
Sbjct: 423 KGLC 426
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 61/127 (48%), Gaps = 17/127 (13%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARL 102
P+ P Y Y+ ++ L AK +++ ++++ ++ ++ P E+ F I + + L
Sbjct: 2 PVAPDTYT---YNTVLKGLCCAKQWEQAEELMREMIRNS-CHPNEVTFATQIRAFCQNGL 57
Query: 103 LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF---------ISFNLKAI 153
L+ A+++ ++MP + V +TL+N G++D +L + +N
Sbjct: 58 LDRAVELLEQMPKYGCTPDVIIYSTLVNGFSEHGRVDEALKLLNTMLCRPNTVCYN---- 113
Query: 154 AVLDGLC 160
A L GLC
Sbjct: 114 AALKGLC 120
>gi|224089785|ref|XP_002308813.1| predicted protein [Populus trichocarpa]
gi|222854789|gb|EEE92336.1| predicted protein [Populus trichocarpa]
Length = 270
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 36 ANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVIS 95
+ + +A +KP NL+ Y++++ +GRAK ++++ +Q D + P + F ++
Sbjct: 37 SEEMKALGVKP---NLVIYNILLDAMGRAKRPWQVKK-FYQDIIDNGLSPSFVTFAALLH 92
Query: 96 FYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
YGRAR + A +++ EM + V N++L G +D+ E+F
Sbjct: 93 AYGRARYGDDAFKIYREMKEKGLGLNVVLYNSILAMCADLGHVDKAVEIF 142
>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 545
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I L + K DE + ++ H ++P+ + + ++I ++ + + +FDEM
Sbjct: 341 YSIMINGLCKIKRVDEALNLFEEI-HQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEM 399
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLC 160
V + N L++AL G LDR LF +AI +LDGLC
Sbjct: 400 LDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLC 454
>gi|218189906|gb|EEC72333.1| hypothetical protein OsI_05540 [Oryza sativa Indica Group]
Length = 747
Score = 45.4 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 42/84 (50%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+ L+I L M + + IL + PEE +I+ YG+A + + ++++F M
Sbjct: 139 FSLLIPILASHSMLNHARCILLDTMPSFSIAPEEATVAALIAAYGKANIPQESVKLFRLM 198
Query: 114 PSFNVQRTVKSLNTLLNALLTCGK 137
P + RT S N +L A+L G+
Sbjct: 199 PDLGIARTALSYNAVLKAILCRGR 222
Score = 43.5 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+L Y+ +I G K + ++ +K D V P+ + +++ + RA LE A +V
Sbjct: 241 DLSTYNTLIWGFGLCKKMEAALRVFGDMK-DHGVTPDVTTYNTLLNAWVRAGDLESARKV 299
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLCS 161
FDEMP + S N ++ + GK++ LF K + A++ GLC
Sbjct: 300 FDEMPGAGFAQNSVSYNVMIKGYVEAGKVEEAVGLFSEMGEKGLRLSEKTFAALMPGLCD 359
Query: 162 N 162
+
Sbjct: 360 D 360
Score = 39.3 bits (90), Expect = 0.62, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMK 142
V P+ + +I +G + +E AL+VF +M V V + NTLLNA + G L+ +
Sbjct: 238 VTPDLSTYNTLIWGFGLCKKMEAALRVFGDMKDHGVTPDVTTYNTLLNAWVRAGDLESAR 297
Query: 143 ELF 145
++F
Sbjct: 298 KVF 300
>gi|223946379|gb|ACN27273.1| unknown [Zea mays]
gi|413924536|gb|AFW64468.1| pentatricopeptide repeat 5 [Zea mays]
Length = 386
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
R +++ ++++I GR + FD+M+Q+ L ++ P F ++I+ YGRARL E A
Sbjct: 153 RPDVITFNILIDSYGRKQTFDKMEQVFKSLLR-SKERPTHPTFNSMITNYGRARLREKAE 211
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
V ++M + + L+ C + + +++F
Sbjct: 212 SVVEKMEELGFKPNYVTQECLIIMYAHCDCVSKARQVF 249
>gi|326509863|dbj|BAJ87147.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 757
Score = 45.4 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
FR + L++ L M + + IL V P+E +++ YGRA + + A
Sbjct: 142 FRPEPATFALLVPILASKGMLNHARCILLDTMPSFSVCPDEATVAALVAAYGRAGIPQEA 201
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGK 137
+++F MP + RT S N +L A+L G+
Sbjct: 202 VKLFRLMPELGITRTALSYNAVLKAILCRGR 232
Score = 38.5 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I G K + ++ +K V P+ + +++ + R LE A +VFDEM
Sbjct: 255 YNTLIWGFGLCKKMESAVRVFGDMKGHG-VAPDVTTYNTLLNAWVRKGDLESARKVFDEM 313
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLCSN 162
P ++R S N ++ + K++ LF K + ++ GLC +
Sbjct: 314 PEAGLERNSISYNVMIKGYVDANKVEEALGLFTEMGEKGLRLTEKTFAVLMPGLCDD 370
Score = 35.8 bits (81), Expect = 6.3, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMK 142
V P + +I +G + +E A++VF +M V V + NTLLNA + G L+ +
Sbjct: 248 VAPTLSTYNTLIWGFGLCKKMESAVRVFGDMKGHGVAPDVTTYNTLLNAWVRKGDLESAR 307
Query: 143 ELF 145
++F
Sbjct: 308 KVF 310
>gi|449448705|ref|XP_004142106.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830,
chloroplastic-like [Cucumis sativus]
Length = 849
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
+ ++ Y I+ AK++ ++ ++ V P + + ++IS + L+E A
Sbjct: 364 LKLDVFTYSTIVKVFADAKLWKMALRVKEDMQ-SAGVSPNMVTWSSLISSCANSGLVELA 422
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGL 159
+Q+F+EM S + + NTLL+A + + DR LF S+ K + DG+
Sbjct: 423 IQLFEEMVSAGCEPNTQCCNTLLHACVEGRQFDRAFRLFRSWKEKEL--WDGI 473
>gi|404357953|gb|AFR63969.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357957|gb|AFR63971.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
Length = 187
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 70 MQQILHQLKHDTRVIPEEI-----IFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKS 124
M L RV E + + +V++ Y +A L+ HA ++FDEMP +R V S
Sbjct: 10 MYSSCGDLSSALRVFDESVSKDLPAWNSVVNAYAKAGLINHARKLFDEMP----ERNVIS 65
Query: 125 LNTLLNALLTCGKLDRMKELF 145
+ L+N + CGK +LF
Sbjct: 66 WSCLINGYVMCGKYKEALDLF 86
>gi|302822123|ref|XP_002992721.1| hypothetical protein SELMODRAFT_135826 [Selaginella moellendorffii]
gi|300139462|gb|EFJ06202.1| hypothetical protein SELMODRAFT_135826 [Selaginella moellendorffii]
Length = 449
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 52/98 (53%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
R +L+ ++++I GRA F +M++ L + + P F ++++ YG++R L
Sbjct: 237 RPDLVTFNVLIDAYGRAGDFVKMERTYKSLVNLSGCKPSATTFNSMLASYGQSRELGKME 296
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
QV M + + + NTL+++ G+LD M++ F
Sbjct: 297 QVLVRMDMAGLGPDLTTFNTLMSSYGRAGELDTMRKCF 334
Score = 42.7 bits (99), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
++ ++ G+++ +M+Q+L ++ + P+ F ++S YGRA L+ + FD+M
Sbjct: 279 FNSMLASYGQSRELGKMEQVLVRMDM-AGLGPDLTTFNTLMSSYGRAGELDTMRKCFDKM 337
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFI 146
V+ V +L+ LL A G +D + LFI
Sbjct: 338 VRSPVKPQVSTLDVLLRAYAEHGLVDEAEALFI 370
>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Glycine max]
Length = 725
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 11/129 (8%)
Query: 6 PTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAK 65
P SPF+L LL L +++LF+ A K + + L+I KLG
Sbjct: 63 PISPFQLCKLLELPLDIPTSMELFQ---------RAGAQKGYSHTFDACYLLIDKLGAVG 113
Query: 66 MFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPS-FNVQRTVKS 124
F ++++L Q+K D ++ +E +F ++ YG+A L A ++ +M ++ T KS
Sbjct: 114 DFKVIEKLLKQMK-DEGLLFKESLFILIMKHYGKAGLPGQATRLLLDMWGVYSCDPTFKS 172
Query: 125 LNTLLNALL 133
N +L+ L+
Sbjct: 173 YNVVLDILV 181
>gi|242078445|ref|XP_002443991.1| hypothetical protein SORBIDRAFT_07g005470 [Sorghum bicolor]
gi|241940341|gb|EES13486.1| hypothetical protein SORBIDRAFT_07g005470 [Sorghum bicolor]
Length = 602
Score = 45.4 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Query: 67 FDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLN 126
+ E+ I Q++ + P+ + + +I YG+AR E AL VF+EM V+ T KS N
Sbjct: 296 YKEVSSIYDQMQR-AGMKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYN 354
Query: 127 TLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIM 167
LL+A G +D +F + ++ V LCS +++
Sbjct: 355 ILLDAFAISGLVDEANTVFKA--MRRHRVEPDLCSYTTMVL 393
>gi|224136033|ref|XP_002327364.1| predicted protein [Populus trichocarpa]
gi|222835734|gb|EEE74169.1| predicted protein [Populus trichocarpa]
Length = 662
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ + + LG+ K + + ++K D +P+ + +IS +GRA ++ A+++F+E+
Sbjct: 456 YNTVFSALGKLKQISPLHDLYEKMKQDG-PLPDTFTYNILISSFGRAGKVDEAIKIFEEL 514
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLD 139
+ + S N+L+N L G LD
Sbjct: 515 EDSDYKPDTCSYNSLINCLGKNGHLD 540
>gi|125539409|gb|EAY85804.1| hypothetical protein OsI_07165 [Oryza sativa Indica Group]
Length = 649
Score = 45.4 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 71/143 (49%), Gaps = 19/143 (13%)
Query: 23 KLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR 82
++A+QLF+ + P KP ++ Y+ ++ L RA +++ +++ ++
Sbjct: 481 EVAIQLFR----------SMPCKP---DIFSYNAVLKGLCRAARWEDAGELIAEMV-GKD 526
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMK 142
P E+ F +I+ + L++ A++V ++MP++ + + N L+N G+LD
Sbjct: 527 CPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPDIFTYNALINGFSEQGRLDDAL 586
Query: 143 ELFISFNLKAIAV-----LDGLC 160
+L + + K A+ L GLC
Sbjct: 587 KLLSTMSCKPDAISYNSTLKGLC 609
Score = 38.9 bits (89), Expect = 0.77, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRM 141
R P E+ F I + + LL+ A+Q+ D+MP + V +TL+N G +D+
Sbjct: 220 RCPPNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQA 279
Query: 142 KELFISFNLKA-----IAVLDGLC 160
+L + K A L GLC
Sbjct: 280 LDLLNTMLCKPNTVCYNAALKGLC 303
Score = 38.5 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 8/115 (6%)
Query: 52 LHYDLIITKLGRAKMFDEMQQILHQL-KHDTRVIPEEIIFCNVISFYGRARLLEHALQVF 110
L ++ ++ RA+ + + +++ Q+ + D +I E+ F +I + L+ +A QVF
Sbjct: 395 LGFNAVLKGFCRAERWHDASELIAQMFRDDCPLI--EMTFNILIDTLCQNGLVNYATQVF 452
Query: 111 DEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI-----AVLDGLC 160
++MP + + + ++LLN G ++ +LF S K AVL GLC
Sbjct: 453 EQMPRYRCTPDIVTYSSLLNGFSEQGLVEVAIQLFRSMPCKPDIFSYNAVLKGLC 507
>gi|449521499|ref|XP_004167767.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g02830, chloroplastic-like [Cucumis sativus]
Length = 855
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
+ ++ Y I+ AK++ ++ ++ V P + + ++IS + L+E A
Sbjct: 364 LKLDVFTYSTIVKVFADAKLWKMALRVKEDMQ-SAGVSPNMVTWSSLISSCANSGLVELA 422
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGL 159
+Q+F+EM S + + NTLL+A + + DR LF S+ K + DG+
Sbjct: 423 IQLFEEMVSAGCEPNTQCCNTLLHACVEGRQFDRAFRLFRSWKEKEL--WDGI 473
>gi|449491568|ref|XP_004158939.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 412
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 87 EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFI 146
EI + +I+ Y + +E A+ +++EMP + VK+ +TLL LL GK+ +LF
Sbjct: 202 EISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFG 261
Query: 147 SFNLKAIAV--------LDGLCSN 162
I+V LDGLC N
Sbjct: 262 VMKASGISVDSCIYVIFLDGLCKN 285
Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 17/117 (14%)
Query: 56 LIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPS 115
+II L + DE ++I ++K +IP I + +++ + A LE + ++F+EM
Sbjct: 67 IIIDGLCKVGHEDEAKEIFEEMKAQG-MIPNVISYSSLVHGFCCAGKLEESKRLFNEMVD 125
Query: 116 FNVQRTVKSLNTLLNALLTCGKLDRMKEL------------FISFNLKAIAVLDGLC 160
VQ + N L++ L GK+ K+L +++N +++DG C
Sbjct: 126 QGVQPNLVQFNVLIDILCKEGKVIEAKKLLEVTIQRGIILDLVTYN----SLIDGFC 178
>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Glycine max]
Length = 757
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 65/130 (50%), Gaps = 13/130 (10%)
Query: 50 NLLHYDLIITKL-GRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQ 108
NL+ Y+ +I L G+ +M E+ +++ +++ ++P+E+ + +++ + + L L
Sbjct: 276 NLISYNSVINGLCGKGRM-SEVGELVEEMR-GKGLVPDEVTYNTLVNGFCKEGNLHQGLV 333
Query: 109 VFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLC 160
+ EM + V + TL+N + G L R E+F ++ + ++DG C
Sbjct: 334 LLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFC 393
Query: 161 SNLKIIMNDS 170
K +MN++
Sbjct: 394 Q--KGLMNEA 401
>gi|356552149|ref|XP_003544432.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g53170-like [Glycine max]
Length = 481
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 46/95 (48%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+ II G+A MF++M L+ + + P+ + + YG A ++ +
Sbjct: 229 NCVTYNSIIDGYGKASMFEQMDDALNDMIENGNSHPDVFTLNSFVGAYGNAGQIDKMEKW 288
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
+DE ++ + + NT++ + G ++MK +
Sbjct: 289 YDEFQLMGIKPDITTFNTMIKSYGKAGMYEKMKTV 323
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F ++ Y+ +I G+A ++M Q ++KH V P I +C+++S Y + ++
Sbjct: 332 FTPTIVTYNTVIEVFGKAGEIEKMDQHFLKMKH-LGVKPNSITYCSLVSAYSKVGCIDKV 390
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFIS 147
+ + + +V N +++A G L +M ELF++
Sbjct: 391 DSIMRHVENSDVVLDTPFFNCIISAYGQAGNLKKMGELFLA 431
Score = 39.7 bits (91), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
++ Y ++I + + FD ++ +L ++ + + + + ++I YG+A + E
Sbjct: 194 DVYTYSILIRCCAKFRRFDLIEHVLAEMSY-LGIKCNCVTYNSIIDGYGKASMFEQMDDA 252
Query: 110 FDEM-PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153
++M + N V +LN+ + A G++D+M++ + F L I
Sbjct: 253 LNDMIENGNSHPDVFTLNSFVGAYGNAGQIDKMEKWYDEFQLMGI 297
>gi|302823876|ref|XP_002993586.1| hypothetical protein SELMODRAFT_137265 [Selaginella moellendorffii]
gi|300138598|gb|EFJ05361.1| hypothetical protein SELMODRAFT_137265 [Selaginella moellendorffii]
Length = 451
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 52/98 (53%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
R +L+ ++++I GRA F +M++ L + + P F ++++ YG++R L
Sbjct: 239 RPDLVTFNVLIDAYGRAGDFVKMERTYKSLVNLSGCKPSATTFNSMLASYGQSRELGKME 298
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
QV M + + + NTL+++ G+LD M++ F
Sbjct: 299 QVLVRMDMAGLGPDLTTFNTLMSSYGRAGELDTMRKCF 336
Score = 42.7 bits (99), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
++ ++ G+++ +M+Q+L ++ + P+ F ++S YGRA L+ + FD+M
Sbjct: 281 FNSMLASYGQSRELGKMEQVLVRMDM-AGLGPDLTTFNTLMSSYGRAGELDTMRKCFDKM 339
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFI 146
V+ V +L+ LL A G +D + LFI
Sbjct: 340 VRSPVKPQVSTLDVLLRAYAEHGLVDEAEALFI 372
>gi|255660946|gb|ACU25642.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
Length = 484
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 10/132 (7%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
++LH K+ + ALQ F+ E L F +N + II LGRA + + I
Sbjct: 17 NVLHGAKNXEHALQFFRW-------VERSNL--FEHNRETHHKIIEILGRASKLNHARCI 67
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L + E++ + +I YG+A +++ ++++F +M V+RT+KS + L +L
Sbjct: 68 LLDMPKKGLEWDEDL-WVLLIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVIL 126
Query: 134 TCGKLDRMKELF 145
G+ K F
Sbjct: 127 RRGRYMMAKRYF 138
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD--- 139
++P+ + + +I Y R + +E A + F EM N++ TV + TL+ ++ ++D
Sbjct: 181 IMPDVVTYNTMIXGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDAL 240
Query: 140 RMKELFISFNLKAIAV-----LDGLCSNLKI 165
R+ E F +K A+ L GLC+ K+
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAQKM 271
>gi|255660918|gb|ACU25628.1| pentatricopeptide repeat-containing protein [Xeroaloysia
ovatifolia]
Length = 484
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
++LH K + ALQ F+ E L F +N + II LGRA + + I
Sbjct: 17 NVLHGSKTSEHALQFFRW-------VERSNL--FEHNRETHLKIIEILGRASKLNHARCI 67
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L + E++ + +I YG+A +++ ++++F +M V+RT KS +TL +L
Sbjct: 68 LLDMPKKGLEWDEDM-WVLMIDSYGKAGIVQESVKLFQKMEELGVERTTKSYDTLFKVIL 126
Query: 134 TCGKLDRMKELF 145
G+ K F
Sbjct: 127 RRGRFMMAKRYF 138
Score = 38.5 bits (88), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 16/109 (14%)
Query: 65 KMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKS 124
+ FD+M+ + P+ I + +I+ Y R + ++ A + F EM N++ TV +
Sbjct: 171 RFFDDMKS--------REISPDVITYNTMINGYYRVKKMDEAEKYFVEMKGRNIEPTVVT 222
Query: 125 LNTLLNALLTCGKLD---RMKELFISFNLKAIAV-----LDGLCSNLKI 165
TL+ ++ ++D R+ E + +K A+ L GLC+ K+
Sbjct: 223 YTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEKM 271
Score = 36.2 bits (82), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 55/121 (45%), Gaps = 4/121 (3%)
Query: 37 NDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISF 96
+D ++ + P +++ Y+ +I R K DE ++ ++K + P + + +I
Sbjct: 174 DDMKSREISP---DVITYNTMINGYYRVKKMDEAEKYFVEMK-GRNIEPTVVTYTTLIKG 229
Query: 97 YGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVL 156
Y ++ AL++ +EM + ++ + +TLL L K+ + + K IA
Sbjct: 230 YVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSVLKEMVDKYIAPT 289
Query: 157 D 157
D
Sbjct: 290 D 290
>gi|242090501|ref|XP_002441083.1| hypothetical protein SORBIDRAFT_09g020090 [Sorghum bicolor]
gi|241946368|gb|EES19513.1| hypothetical protein SORBIDRAFT_09g020090 [Sorghum bicolor]
Length = 506
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNV-ISFYGRARLLEHALQVFDE 112
Y+ ++ + D + H L+ D R P + N+ I+ YGR+ L++H
Sbjct: 185 YNALMAAYMHNGLLDSCIETFHALERDPRCGPPNVDSYNILIALYGRSLLVDHMEATLQS 244
Query: 113 MPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ + RT+ + N +++ LT D+M+ +F
Sbjct: 245 LDASGQPRTIGTYNAIISGYLTAWMWDKMEAVF 277
>gi|449440748|ref|XP_004138146.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18900-like [Cucumis sativus]
Length = 874
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLL 103
L FR++ Y +I LGRAK F + ++L Q+ D P + + +I YGRA L
Sbjct: 372 LPRFRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDG-CQPNVVTYNRIIHSYGRANYL 430
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD 139
+ A+ VF +M + + TL++ G LD
Sbjct: 431 QDAVNVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLD 466
>gi|404357535|gb|AFR63760.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357543|gb|AFR63764.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357551|gb|AFR63768.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357555|gb|AFR63770.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357559|gb|AFR63772.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357567|gb|AFR63776.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357571|gb|AFR63778.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357581|gb|AFR63783.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
Length = 187
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 70 MQQILHQLKHDTRVIPEEI-----IFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKS 124
M L RV E + + +V++ Y +A L+ HA ++FDEMP +R V S
Sbjct: 10 MYSSCGDLSSALRVFDESVSKDLPAWNSVVNAYAKAGLINHARKLFDEMP----ERNVIS 65
Query: 125 LNTLLNALLTCGKLDRMKELF 145
+ L+N + CGK +LF
Sbjct: 66 WSCLINGYVMCGKYKEALDLF 86
>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1246
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++ LGR ++ +L ++K + P + I GRAR ++ A +F EM
Sbjct: 238 YSALMVALGRRGDTRKIMNLLEEMK-SIGLRPNIYTYTICIRALGRARRIDDAWGIFKEM 296
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFI 146
V + L++AL GKLD+ KEL++
Sbjct: 297 DDEGCGPDVITYTVLIDALCAAGKLDKAKELYV 329
Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
R +L Y +++ L DE Q +LK T + P+ + + +I+ G++R L+ AL
Sbjct: 968 RPDLKSYTILVECLCITGRIDEAVQYFEELKL-TGLDPDTVSYNFIINGLGKSRRLDEAL 1026
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+F EM + + + + N L+ L GK+D +++
Sbjct: 1027 SLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMY 1064
>gi|147843358|emb|CAN80524.1| hypothetical protein VITISV_030537 [Vitis vinifera]
Length = 714
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 82/171 (47%), Gaps = 29/171 (16%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
+L+ + P+ AL++F + F +N Y I+ KL ++K F + +
Sbjct: 135 NLIKRETDPQRALEIF---------NRVAEQRGFSHNNATYATILHKLAKSKKFQAIDAV 185
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM-PSFNVQRTVKSLNTLLNAL 132
LHQ+ ++T E IF N++ + + L E +++FD + P + ++K+++T LN L
Sbjct: 186 LHQMTYETCKF-HEGIFLNLMKHFSKLSLHERVVEMFDAIXPIVREKPSLKAISTCLNLL 244
Query: 133 LTC---------GKLD-------RMKELFISF-NLKAIAVL-DGLCSNLKI 165
+ G +D MK+ +S+ NL + L +GLC + ++
Sbjct: 245 VESNQSSITAKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRL 295
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/96 (19%), Positives = 46/96 (47%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
NL+ Y +I L + E ++ ++ +++P+ + + +I+ + ++ AL++
Sbjct: 278 NLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNALINGFCHGXKVDRALKI 337
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ M V + + L+N G+L+ KE+F
Sbjct: 338 MEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVF 373
>gi|115446101|ref|NP_001046830.1| Os02g0470000 [Oryza sativa Japonica Group]
gi|47497415|dbj|BAD19472.1| putative PPR protein [Oryza sativa Japonica Group]
gi|47497530|dbj|BAD19582.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113536361|dbj|BAF08744.1| Os02g0470000 [Oryza sativa Japonica Group]
Length = 649
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 71/143 (49%), Gaps = 19/143 (13%)
Query: 23 KLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR 82
++A+QLF+ + P KP ++ Y+ ++ L RA +++ +++ ++
Sbjct: 481 EVAIQLFR----------SMPCKP---DIFSYNAVLKGLCRAARWEDAGELIAEMV-GKD 526
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMK 142
P E+ F +I+ + L++ A++V ++MP++ + + N L+N G+LD
Sbjct: 527 CPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPDIFTYNALINGFSEQGRLDDAL 586
Query: 143 ELFISFNLKAIAV-----LDGLC 160
+L + + K A+ L GLC
Sbjct: 587 KLLSTMSCKPDAISYNSTLKGLC 609
Score = 39.3 bits (90), Expect = 0.60, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 8/115 (6%)
Query: 52 LHYDLIITKLGRAKMFDEMQQILHQL-KHDTRVIPEEIIFCNVISFYGRARLLEHALQVF 110
L ++ ++ RA+ + + +++ Q+ + D +I E+ F +I + L+ +A QVF
Sbjct: 395 LGFNAVLKGFCRAERWHDASELIAQMFRDDCPLI--EMTFNILIDMLCQNGLVNYATQVF 452
Query: 111 DEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI-----AVLDGLC 160
++MP + + + ++LLN G ++ +LF S K AVL GLC
Sbjct: 453 EQMPRYRCTPDIVTYSSLLNGFSEQGLVEVAIQLFRSMPCKPDIFSYNAVLKGLC 507
Score = 38.9 bits (89), Expect = 0.79, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRM 141
R P E+ F I + + LL+ A+Q+ D+MP + V +TL+N G +D+
Sbjct: 220 RCPPNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQA 279
Query: 142 KELFISFNLKA-----IAVLDGLC 160
+L + K A L GLC
Sbjct: 280 LDLLNTMLCKPNTVCYNAALKGLC 303
>gi|404357661|gb|AFR63823.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357667|gb|AFR63826.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357677|gb|AFR63831.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357685|gb|AFR63835.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
Length = 187
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 70 MQQILHQLKHDTRVIPEEI-----IFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKS 124
M L RV E + + +V++ Y +A L+ HA ++FDEMP +R V S
Sbjct: 10 MYSSCGDLSSALRVFDESVSKDLPAWNSVVNAYAKAGLINHARKLFDEMP----ERNVIS 65
Query: 125 LNTLLNALLTCGKLDRMKELF 145
+ L+N + CGK +LF
Sbjct: 66 WSCLINGYVMCGKYKEALDLF 86
>gi|356508382|ref|XP_003522936.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30825,
chloroplastic-like [Glycine max]
Length = 854
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 47/90 (52%)
Query: 40 EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR 99
EA F N++ ++ +IT G+A+ D Q++ ++ V P+E + ++I +GR
Sbjct: 287 EAMQEAGFSDNIVAFNTMITGFGKARRMDAAQRLFMRITRCLEVDPDETTYRSMIEGWGR 346
Query: 100 ARLLEHALQVFDEMPSFNVQRTVKSLNTLL 129
A E+A + + E+ + + +L TL+
Sbjct: 347 ADNYEYATRYYKELKQMGFKPSSSNLFTLI 376
>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
Length = 703
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 10/120 (8%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
NL Y++++ L D + L+ +V P+ I + ++ + L+HAL +
Sbjct: 157 NLQTYNIVLRSLCARGDLDRAVTLFDSLRR-RQVAPDRITYSTLMCGLAKQDRLDHALDL 215
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF--------NLKAIAV-LDGLC 160
DEMP VQ V N LL G+ +++ ++ NL V LDGLC
Sbjct: 216 LDEMPRSRVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLC 275
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
NL Y+++I L + M DE ++ L+ D IP+ + F +I + A +
Sbjct: 367 NLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTI 426
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKL 138
F+E Q V S ++++N L G+L
Sbjct: 427 FEEARVSGKQLDVFSYSSMINGLCNVGRL 455
>gi|413937640|gb|AFW72191.1| hypothetical protein ZEAMMB73_762171 [Zea mays]
Length = 503
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +I+T L + + F+E + ++K + P+ + + +I+ GRA L A QV
Sbjct: 291 NVITYTMIMTSLTKCERFEEALSVSDRMKS-SGCKPDTLFYNALINLLGRAGHLFEANQV 349
Query: 110 FD-EMPSFNVQRTVKSLNTLLNALLTCGKLD 139
F EMP V R V + NT+++ L G+ D
Sbjct: 350 FRVEMPRNGVLRNVATYNTMISILCQYGRDD 380
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 57 IITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSF 116
++ LG+ + D M +L ++ V + + I AR A+ +FD++
Sbjct: 125 MVDLLGKTRQIDRMWDLLSEMHCRGLVTVDTVA--KSIRRLAAARKWRDAILLFDQLEDL 182
Query: 117 NVQRTVKSLNTLLNALLTCGKLDRMKELFI 146
++R +++N LL+AL K++ +E+F+
Sbjct: 183 GLERNTETMNVLLDALCKEKKVELAREVFV 212
>gi|404357537|gb|AFR63761.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357547|gb|AFR63766.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357573|gb|AFR63779.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357575|gb|AFR63780.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357579|gb|AFR63782.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357583|gb|AFR63784.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357589|gb|AFR63787.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357593|gb|AFR63789.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357607|gb|AFR63796.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357611|gb|AFR63798.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357615|gb|AFR63800.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357631|gb|AFR63808.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357639|gb|AFR63812.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357651|gb|AFR63818.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357653|gb|AFR63819.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357655|gb|AFR63820.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357657|gb|AFR63821.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357659|gb|AFR63822.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357675|gb|AFR63830.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357679|gb|AFR63832.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357683|gb|AFR63834.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357687|gb|AFR63836.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357689|gb|AFR63837.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357691|gb|AFR63838.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357695|gb|AFR63840.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357697|gb|AFR63841.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357699|gb|AFR63842.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357703|gb|AFR63844.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357707|gb|AFR63846.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357709|gb|AFR63847.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357711|gb|AFR63848.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357713|gb|AFR63849.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357805|gb|AFR63895.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357817|gb|AFR63901.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357829|gb|AFR63907.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357837|gb|AFR63911.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357843|gb|AFR63914.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357845|gb|AFR63915.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357847|gb|AFR63916.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357849|gb|AFR63917.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357851|gb|AFR63918.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357853|gb|AFR63919.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357855|gb|AFR63920.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357857|gb|AFR63921.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357859|gb|AFR63922.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357861|gb|AFR63923.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357863|gb|AFR63924.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357865|gb|AFR63925.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357867|gb|AFR63926.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357869|gb|AFR63927.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357871|gb|AFR63928.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357873|gb|AFR63929.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357875|gb|AFR63930.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357877|gb|AFR63931.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357887|gb|AFR63936.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357889|gb|AFR63937.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357895|gb|AFR63940.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357897|gb|AFR63941.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357899|gb|AFR63942.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357901|gb|AFR63943.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357903|gb|AFR63944.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357905|gb|AFR63945.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357907|gb|AFR63946.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357909|gb|AFR63947.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357911|gb|AFR63948.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357913|gb|AFR63949.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357915|gb|AFR63950.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357917|gb|AFR63951.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357919|gb|AFR63952.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357921|gb|AFR63953.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357927|gb|AFR63956.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357929|gb|AFR63957.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357955|gb|AFR63970.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357971|gb|AFR63978.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
Length = 187
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 70 MQQILHQLKHDTRVIPEEI-----IFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKS 124
M L RV E + + +V++ Y +A L+ HA ++FDEMP +R V S
Sbjct: 10 MYSSCGDLSSALRVFDESVSKDLPAWNSVVNAYAKAGLINHARKLFDEMP----ERNVIS 65
Query: 125 LNTLLNALLTCGKLDRMKELF 145
+ L+N + CGK +LF
Sbjct: 66 WSCLINGYVMCGKYKEALDLF 86
>gi|356523145|ref|XP_003530202.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
mitochondrial-like [Glycine max]
Length = 529
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 19/126 (15%)
Query: 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMF 67
+P LASL+ Q P L+LQ+F + +P+ + P LH + KL RA+ F
Sbjct: 55 TPHNLASLISRQHDPDLSLQIFHHAHPSLSHAPQP---------LH--ALFLKLSRARRF 103
Query: 68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNT 127
++ +L L + +I YG A AL++F + V+SLN
Sbjct: 104 YHLESLLTHLPNPPPE----PPLTTLIRAYGLAGKPLSALRIFLKFQPLG----VRSLNA 155
Query: 128 LLNALL 133
LLNAL+
Sbjct: 156 LLNALV 161
>gi|449477323|ref|XP_004154991.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g18900-like [Cucumis sativus]
Length = 874
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLL 103
L FR++ Y +I LGRAK F + ++L Q+ D P + + +I YGRA L
Sbjct: 372 LPRFRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDG-CQPNVVTYNRIIHSYGRANYL 430
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD 139
+ A+ VF +M + + TL++ G LD
Sbjct: 431 QDAVNVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLD 466
>gi|302785015|ref|XP_002974279.1| hypothetical protein SELMODRAFT_101336 [Selaginella moellendorffii]
gi|300157877|gb|EFJ24501.1| hypothetical protein SELMODRAFT_101336 [Selaginella moellendorffii]
Length = 330
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 13/100 (13%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE--EIIFCNVISFYGRARLLEH 105
++NL+ ++ +IT + + +++ ++ PE E+ + ++S Y R LE
Sbjct: 3 KHNLVTWNTLITASAYSGNVEYAEELFQRM-------PERDEVTWNAMLSAYAHNRHLEE 55
Query: 106 ALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
A + F+EMPS NV + N L++A GKLD +K LF
Sbjct: 56 AKRFFEEMPSKNVV----AWNILMHAYCEEGKLDEVKGLF 91
>gi|259489858|ref|NP_001159344.1| uncharacterized protein LOC100304439 [Zea mays]
gi|223943533|gb|ACN25850.1| unknown [Zea mays]
Length = 322
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 90 FCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN 149
F VIS YG +RL + A++VF+ +P F +T + N LL+AL G +L
Sbjct: 13 FSAVISSYGHSRLPDQAVEVFNRLPRFGCPQTTEVYNALLDALCANGNFTGAYKLLRRMA 72
Query: 150 LKAIA--------VLDGLCSNLKI 165
K +A ++D C+ K+
Sbjct: 73 RKGVAPDRATFSTLVDSWCAAGKL 96
>gi|449507908|ref|XP_004163164.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Cucumis sativus]
Length = 685
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
K + + Y+ +++ LG+ K + + ++K D P+ + +IS GR ++
Sbjct: 470 KGISTDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDG-PFPDIFTYNILISSLGRVGKVK 528
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153
A++VF+E+ S + + + S N+L+N L G +D F+ K +
Sbjct: 529 EAVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAHMRFLEMQDKGL 577
Score = 36.6 bits (83), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILH--QLKHDTRVIPEEIIFCNVISFYGRARLLE 104
++ ++ Y++++ L + + D ++ +LKH P+E + +I G+ E
Sbjct: 265 YQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKH---CNPDEYTYTIMIRMTGKMGRAE 321
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+L +F+EM + + + NT++ AL G +D+ LF
Sbjct: 322 ESLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLF 362
>gi|404357669|gb|AFR63827.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
Length = 187
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 70 MQQILHQLKHDTRVIPEEI-----IFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKS 124
M L RV E + + +V++ Y +A L+ HA ++FDEMP +R V S
Sbjct: 10 MYSSCGDLSSALRVFDESVSKDLPAWNSVVNAYAKAGLINHARKLFDEMP----ERNVIS 65
Query: 125 LNTLLNALLTCGKLDRMKELF 145
+ L+N + CGK +LF
Sbjct: 66 WSCLINGYVMCGKYKEALDLF 86
>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Glycine max]
Length = 511
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L + KM DE + ++KH +IP+ + + ++I + LE A+ + M
Sbjct: 340 YTNMINGLCKTKMVDEAMSLFEEMKHKN-MIPDIVTYNSLIDGLCKNHHLERAIALCKRM 398
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+Q V S LL+ L G+L+ KE+F
Sbjct: 399 KEQGIQPDVYSYTILLDGLCKSGRLEDAKEIF 430
>gi|404357663|gb|AFR63824.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357665|gb|AFR63825.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357671|gb|AFR63828.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357673|gb|AFR63829.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357681|gb|AFR63833.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357693|gb|AFR63839.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357701|gb|AFR63843.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357705|gb|AFR63845.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
Length = 187
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 70 MQQILHQLKHDTRVIPEEI-----IFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKS 124
M L RV E + + +V++ Y +A L+ HA ++FDEMP +R V S
Sbjct: 10 MYSSCGDLSSALRVFDESVSKDLPAWNSVVNAYAKAGLINHARKLFDEMP----ERNVIS 65
Query: 125 LNTLLNALLTCGKLDRMKELF 145
+ L+N + CGK +LF
Sbjct: 66 WSCLINGYVMCGKYKEALDLF 86
>gi|168000162|ref|XP_001752785.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695948|gb|EDQ82289.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 482
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 31/127 (24%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLK-------------------------------HDTR 82
Y+L++ G+A F E Q + Q+K +
Sbjct: 216 YNLMLHTYGKAGKFSEQQALFRQMKGAGVPMTVVTFNSLMAFQKTVADAEACLRHMQAAK 275
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMK 142
+ P+ I + +I+ Y +AR +E A VF EM + ++ + + NTLL+A C +++ +
Sbjct: 276 IKPDVITYTGLINAYSKARRVEEAHVVFREMVASGLRPSRIAYNTLLDAYAKCKEVEGAE 335
Query: 143 ELFISFN 149
LF S
Sbjct: 336 SLFKSMG 342
>gi|404357879|gb|AFR63932.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357881|gb|AFR63933.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357883|gb|AFR63934.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357885|gb|AFR63935.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357891|gb|AFR63938.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357893|gb|AFR63939.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
Length = 187
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 70 MQQILHQLKHDTRVIPEEI-----IFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKS 124
M L RV E + + +V++ Y +A L+ HA ++FDEMP +R V S
Sbjct: 10 MYSSCGDLSSALRVFDESVSKDLPAWNSVVNAYAKAGLINHARKLFDEMP----ERNVIS 65
Query: 125 LNTLLNALLTCGKLDRMKELF 145
+ L+N + CGK +LF
Sbjct: 66 WSCLINGYVMCGKYKEALDLF 86
>gi|168059281|ref|XP_001781632.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666946|gb|EDQ53588.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 871
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 16/113 (14%)
Query: 50 NLLHYDLIITKLGRA--------KMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRAR 101
NL+ Y+ II G+ +FDEMQ+ V P+ I F ++I+ R
Sbjct: 269 NLITYNTIIDACGKGGVDLKQALDIFDEMQK--------EGVEPDRITFNSLIAVCSRGG 320
Query: 102 LLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA 154
L E + +VF EM +++ + + NTL++A+ G+++ + + K I+
Sbjct: 321 LWEDSQRVFAEMQRRGIEQDIFTFNTLIDAVCKGGQMELAASIMTTMRGKNIS 373
>gi|297836398|ref|XP_002886081.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331921|gb|EFH62340.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 743
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
K + N + + I+ L + + DE +L H I +E+ + +I Y R +E
Sbjct: 445 KGIKMNTITLNTILDALCKERKVDEAHNLLDS-AHKRGYIVDEVTYGTLIMGYFREEKVE 503
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
A +++DEM + TV + N+L+ L GK + E F
Sbjct: 504 KAFEMWDEMKRIKITPTVTTFNSLIGGLCHHGKTELAMEKF 544
>gi|356560499|ref|XP_003548529.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Glycine max]
Length = 836
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y ++I+ L + +MF+E ++L ++ + P E++F +I Y R + AL+V
Sbjct: 324 SVVTYGVLISGLMKLEMFEEANEVLVEM-YSMGFAPNEVVFNALIDGYCRKGDMGEALRV 382
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCS 161
DEM ++ + NTLL ++++ +++ + ++V +CS
Sbjct: 383 RDEMAMKGMKPNFVTFNTLLQGFCRSNQMEQAEQVLVYILSSGLSVNMDVCS 434
>gi|449447783|ref|XP_004141647.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g73710-like [Cucumis sativus]
Length = 1020
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
K + N++HY++++ LG+A+ +DE++ +++ + V+P + +I YG+ L++
Sbjct: 155 KDYVPNVIHYNIVLRTLGQAQKWDELRLCWNEMAENG-VVPTNNTYGMLIDVYGKVGLVK 213
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
AL M + ++NT++ L G+ D + +
Sbjct: 214 EALLWIKHMTVRGIFPDEVTMNTVVRVLKDAGEFDSADKFY 254
>gi|357444885|ref|XP_003592720.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481768|gb|AES62971.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 553
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 10/98 (10%)
Query: 64 AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVK 123
+ ++D+MQ + D R P+ + + +I+ YG+AR E AL VF+EM V+ T K
Sbjct: 300 SNIYDQMQ------RADLR--PDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTRK 351
Query: 124 SLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCS 161
+ N LL+A G +++ + +F S ++ + LCS
Sbjct: 352 AYNILLDAFSISGMVEQARIVFKS--MRRDKYMPDLCS 387
>gi|125560423|gb|EAZ05871.1| hypothetical protein OsI_28108 [Oryza sativa Indica Group]
Length = 608
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Query: 67 FDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLN 126
+ E+ I Q++ T + P+ + + +I YG+AR E AL VF+EM V+ T KS N
Sbjct: 298 YKEVSNIYDQMQR-TALKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYN 356
Query: 127 TLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIM 167
L++A G ++ +F + ++ V LCS +++
Sbjct: 357 ILIDAFAISGLVEEAHTVFKA--MRRHRVEPDLCSYTTMVL 395
>gi|115475155|ref|NP_001061174.1| Os08g0191900 [Oryza sativa Japonica Group]
gi|40253652|dbj|BAD05595.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113623143|dbj|BAF23088.1| Os08g0191900 [Oryza sativa Japonica Group]
gi|125602452|gb|EAZ41777.1| hypothetical protein OsJ_26318 [Oryza sativa Japonica Group]
gi|215695295|dbj|BAG90486.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704436|dbj|BAG93870.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 609
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 10/104 (9%)
Query: 64 AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVK 123
+ ++D+MQ+ T + P+ + + +I YG+AR E AL VF+EM V+ T K
Sbjct: 302 SSIYDQMQR--------TALKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRK 353
Query: 124 SLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIM 167
S N L++A G ++ +F + ++ V LCS +++
Sbjct: 354 SYNILIDAFAISGLVEEAHTVFKA--MRRHRVEPDLCSYTTMVL 395
>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
Length = 660
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 67 FDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM-PSFNVQRTVKSL 125
F + Q+ ++K + RV E+ F V YG+A L E A+++F M F +RTV+S
Sbjct: 96 FGTLFQVFDRMKRERRVFIEKN-FILVFRAYGKAHLPEKAIELFGRMVDEFQCRRTVRSF 154
Query: 126 NTLLNALLTCGKLDRMKELF 145
N++LN ++ G R E +
Sbjct: 155 NSVLNVIIQEGLFHRALEFY 174
>gi|404357595|gb|AFR63790.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357619|gb|AFR63802.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357629|gb|AFR63807.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357647|gb|AFR63816.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358079|gb|AFR64032.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358091|gb|AFR64038.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358103|gb|AFR64044.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358107|gb|AFR64046.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358109|gb|AFR64047.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
Length = 187
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 70 MQQILHQLKHDTRVIPEEI-----IFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKS 124
M L RV E + + +V++ Y +A L+ HA ++FDEMP +R V S
Sbjct: 10 MYSSCGDLSSALRVFDESVSKDLPAWNSVVNAYAKAGLVNHARKLFDEMP----ERNVIS 65
Query: 125 LNTLLNALLTCGKLDRMKELF 145
+ L+N + CGK +LF
Sbjct: 66 WSCLINGYVMCGKYKEALDLF 86
>gi|449525162|ref|XP_004169587.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g73710-like [Cucumis sativus]
Length = 1026
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
K + N++HY++++ LG+A+ +DE++ +++ + V+P + +I YG+ L++
Sbjct: 155 KDYVPNVIHYNIVLRTLGQAQKWDELRLCWNEMAENG-VVPTNNTYGMLIDVYGKVGLVK 213
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
AL M + ++NT++ L G+ D + +
Sbjct: 214 EALLWIKHMTVRGIFPDEVTMNTVVRVLKDAGEFDSADKFY 254
>gi|398020760|ref|XP_003863543.1| hypothetical protein, conserved [Leishmania donovani]
gi|322501776|emb|CBZ36858.1| hypothetical protein, conserved [Leishmania donovani]
Length = 801
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
R N+ Y L+ R+ +++ QL+ ++PE ++ ++ + R + A
Sbjct: 130 RPNMESYMLLFRACERSALYNRAFLFYQQLREQFHLVPETAVYNTLLGYCAAVRDVAQAT 189
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF---ISFNLK 151
+ +EM NVQR V + N L++ +L + ++F + NLK
Sbjct: 190 FLIEEMKQLNVQRDVNTYNCLMSVMLESAPYEETLKVFQELLYLNLK 236
>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 988
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 68/138 (49%), Gaps = 9/138 (6%)
Query: 31 NPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIF 90
NP+ E + F +L+ Y+++I L + FD+ +++ +++ + ++P+ + +
Sbjct: 467 NPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEG-IVPDHVTY 525
Query: 91 CNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNL 150
++I + + LL A +VF +M + +V + L+++ G+LD K+ F
Sbjct: 526 TSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQD 585
Query: 151 KAI--------AVLDGLC 160
K + A++ GLC
Sbjct: 586 KGVSPNVITYNALIYGLC 603
>gi|255562047|ref|XP_002522032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538836|gb|EEF40436.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 451
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 11/123 (8%)
Query: 52 LHYDLIITKLGRAKMFDEMQQILHQLKHDTR--VIPEEIIFCNVISFYGRARLLEHALQV 109
+ Y+ +I L ++K + M +++ Q+K I E + ++I YGR+ L++ A++V
Sbjct: 103 IEYEELIKILAKSKRYSSMWKLITQMKDQNPQFSISSETVR-SIIEEYGRSGLIDQAVEV 161
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA--------VLDGLCS 161
F++ S N ++ V N+LL AL L K +A +++G CS
Sbjct: 162 FNQCNSLNCEQNVDIYNSLLFALCEVKLFHGAYALVRRLIRKGLAPNKTTYSVLVNGWCS 221
Query: 162 NLK 164
N K
Sbjct: 222 NGK 224
>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 774
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 41 APPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRA 100
A K + + Y ++I KLG AK F + ++L Q+K + E + C ++ +YGRA
Sbjct: 92 AGSQKGYCHTFDVYHVLIDKLGAAKEFKVIDKLLLQIKEEGIAFRESLFIC-IMKYYGRA 150
Query: 101 RLLEHALQVFDEMPS-FNVQRTVKSLNTLLNALLT 134
L A ++ +M + + T KS N +L+ L++
Sbjct: 151 NLPGQATRMLLDMKGVYCCEPTFKSYNVVLDILVS 185
>gi|224089803|ref|XP_002308816.1| predicted protein [Populus trichocarpa]
gi|222854792|gb|EEE92339.1| predicted protein [Populus trichocarpa]
Length = 700
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
NL+ Y++++ +GRAK ++++ +Q D + P + + ++ YGRAR E A ++
Sbjct: 315 NLVIYNILLDAMGRAKRPWQVKK-FYQDIIDNGLSPSFVTYAALLHAYGRARYGEDAFKI 373
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ EM + V N++L G +D+ E+F
Sbjct: 374 YREMKEKGLGLNVVLYNSILAMCADLGHVDKAVEIF 409
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/99 (19%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F ++ Y++ + + + D+ +++ ++ + V P+ F +IS L + A
Sbjct: 172 FNREVVVYNVTLKVFRKGRDLDKAEKLFDEM-LERGVKPDNFTFSTIISCARLCNLADKA 230
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
++ F++MPSF ++ +L+T++++ G +++ L+
Sbjct: 231 VEWFEKMPSFGLEPDDVTLSTMIDSYGRAGNVEKALSLY 269
>gi|255567580|ref|XP_002524769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535953|gb|EEF37612.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 509
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%)
Query: 67 FDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLN 126
+D+ Q + K + + P + + +IS +GR+ L++H F E+ + N+ V + N
Sbjct: 202 YDKCQSLFLDFKKEANIGPSVVTYNILISVFGRSMLVDHMEATFRELMNLNISPNVSTYN 261
Query: 127 TLLNALLTCGKLDRMKELF 145
L+ +T D M+++F
Sbjct: 262 NLIAGYVTAWMWDDMEQVF 280
>gi|326492688|dbj|BAJ90200.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 325
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
FR + + Y +++ LG DE + + +++ D P+E ++ ++ +G+A ++ A
Sbjct: 3 FRPDKITYSIVMEVLGHCGHLDEAEAVFLEMRRDW--APDEPVYGLLVDLWGKAGNVDKA 60
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
L + M +Q V + N+LL+A L KL+R ++ +
Sbjct: 61 LGWYHAMLQDGLQPNVPTCNSLLSAFL---KLNRFQDAY 96
>gi|302753732|ref|XP_002960290.1| hypothetical protein SELMODRAFT_73828 [Selaginella moellendorffii]
gi|300171229|gb|EFJ37829.1| hypothetical protein SELMODRAFT_73828 [Selaginella moellendorffii]
Length = 546
Score = 45.1 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 62/128 (48%), Gaps = 5/128 (3%)
Query: 38 DTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFY 97
+ EA +KP +L+ + +I G+ K + + + +LK + + P+++I+ ++I+ Y
Sbjct: 85 EMEAGGIKP---DLVIFSTLIELAGKVKDYSKATSLFSKLKA-SGIAPDKVIYNSMINLY 140
Query: 98 GRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLD 157
G+A+ + A + EM + S L+NA K K++F+ K I LD
Sbjct: 141 GKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQ-LD 199
Query: 158 GLCSNLKI 165
N+ I
Sbjct: 200 VTTCNMMI 207
Score = 42.7 bits (99), Expect = 0.058, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 55/99 (55%), Gaps = 7/99 (7%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I G+AK + E Q +L ++K + ++P+ + + +I+ Y ++ A QVF EM
Sbjct: 133 YNSMINLYGKAKFYKEAQGLLAEMK-EAGLMPDTVSYTILINAYAESQKYLEAKQVFLEM 191
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMK---ELFISFN 149
+ +Q V + N +++ GKL+ ++ ELF S +
Sbjct: 192 KTKGIQLDVTTCNMMIDVY---GKLEMVRDAEELFWSMS 227
Score = 36.6 bits (83), Expect = 4.0, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQ-ILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQ 108
++ Y++++ + RA+ ++ + +L ++ D ++P++ F +IS YGRA LE A+
Sbjct: 24 SIFAYNVVLKNVLRARQWELAEGLVLEMVEKD--LVPDKFTFSTLISGYGRANRLEDAMG 81
Query: 109 VFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA 154
EM + ++ + +TL+ + LF IA
Sbjct: 82 WLQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLKASGIA 127
>gi|449465242|ref|XP_004150337.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Cucumis sativus]
Length = 690
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
K + + Y+ +++ LG+ K + + ++K D P+ + +IS GR ++
Sbjct: 475 KGISTDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDG-PFPDIFTYNILISSLGRVGKVK 533
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153
A++VF+E+ S + + + S N+L+N L G +D F+ K +
Sbjct: 534 EAVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAHMRFLEMQDKGL 582
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILH--QLKHDTRVIPEEIIFCNVISFYGRARL 102
K ++ ++ Y++++ L + + D ++ +LKH P+E + +I G+
Sbjct: 268 KGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKH---CNPDEYTYTIMIRMTGKMGR 324
Query: 103 LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
E +L +F+EM + + + NT++ AL G +D+ LF
Sbjct: 325 AEESLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLF 367
>gi|116789832|gb|ABK25404.1| unknown [Picea sitchensis]
Length = 278
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+L Y+ +I+ G+A+ QI + L+ + E+ + N+IS YG+A + A ++
Sbjct: 9 SLQTYNTMISVYGKARELQNAVQIFNSLQKSGLSVDEKT-YSNMISCYGKAGFFQDAAKL 67
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F M ++ + NT+L+A G R +E+F
Sbjct: 68 FSRMQQEGIKPGKVTYNTMLDAYARSGLHTRAEEVF 103
>gi|242073234|ref|XP_002446553.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
gi|241937736|gb|EES10881.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
Length = 381
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 62/127 (48%), Gaps = 11/127 (8%)
Query: 19 QKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLK 78
Q H AL+L N ++ KP +++ Y+ ++ L A +++ ++++ ++
Sbjct: 134 QGHVDSALELLSN-------MQSFGCKP---DIVTYNTLLKGLCSADQWEDAEELMIKMS 183
Query: 79 HDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKL 138
+ +P+ + F +ISF + L+ A +VF +MP + +T++ L GK+
Sbjct: 184 QND-CLPDNVTFNTIISFLCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLAKAGKM 242
Query: 139 DRMKELF 145
++ EL
Sbjct: 243 EQALELL 249
>gi|125548468|gb|EAY94290.1| hypothetical protein OsI_16061 [Oryza sativa Indica Group]
Length = 586
Score = 45.1 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 46/92 (50%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+++I+ L R ++L +L+ D +P + F +VIS Y +A LE A+ V+++M
Sbjct: 292 HNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDM 351
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ + + N L+N G L E++
Sbjct: 352 VASGIMPNTVTYNVLINGYGKVGDLGSAVEVY 383
>gi|255660940|gb|ACU25639.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 484
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 10/132 (7%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
++LH K+ + ALQ F+ E L F +N + II LGRA + + I
Sbjct: 17 NVLHSAKNSEHALQFFRW-------VERSNL--FEHNRETHLKIIEILGRASKLNHARCI 67
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L + E++ + +I YG+A +++ ++++F +M V+RT+KS + L +L
Sbjct: 68 LLDMPKKGLEWDEDL-WVLMIDSYGKAGIVQESVKMFQKMEELGVERTIKSYDALFKVIL 126
Query: 134 TCGKLDRMKELF 145
G+ K F
Sbjct: 127 RRGRYMMAKRYF 138
Score = 40.0 bits (92), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD--- 139
++P+ + + +++ Y R + +E A + F EM N++ TV + TL+ ++ ++D
Sbjct: 181 IMPDVVTYNTMVNGYCRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDAL 240
Query: 140 RMKELFISFNLKAIAV-----LDGLCSNLKI 165
R E F +K A+ L GLC+ K+
Sbjct: 241 RFVEEMKGFGMKPNAITYSTLLPGLCNAEKM 271
>gi|115489794|ref|NP_001067384.1| Os12g0638900 [Oryza sativa Japonica Group]
gi|77556813|gb|ABA99609.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113649891|dbj|BAF30403.1| Os12g0638900 [Oryza sativa Japonica Group]
gi|125580213|gb|EAZ21359.1| hypothetical protein OsJ_37016 [Oryza sativa Japonica Group]
Length = 859
Score = 45.1 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 54/99 (54%), Gaps = 5/99 (5%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
FR + + Y +++ LG DE + + +++HD P+E ++ ++ +G+A ++ A
Sbjct: 537 FRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRHDW--APDEPVYGLLVDLWGKAGNVDKA 594
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
L + M +Q V + N+LL+A L K++R ++ +
Sbjct: 595 LGWYHAMLQDGLQPNVPTCNSLLSAFL---KINRFQDAY 630
Score = 43.1 bits (100), Expect = 0.048, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+++ Y +I LG+A+ F M+++L ++ + P + + +I YGRA L A
Sbjct: 362 FKHDGHSYTTMIGILGQARQFGTMRKLLDEM-NSVHCKPTVVTYNRIIHAYGRANYLREA 420
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD-------RMKELFIS 147
++VF+EM + + TL++ G L+ RM+E+ +S
Sbjct: 421 VKVFEEMQKAGYEPDRVTYCTLIDIHAKGGYLEFAMDLYTRMQEVGLS 468
>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
Length = 1031
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 30/172 (17%)
Query: 23 KLALQLFKN-PNPNA-------------NDTEAPP--LKPFRY-----NLLHYDLIITKL 61
K AL++F+N P+P+A ND + LK ++ Y+++I L
Sbjct: 212 KDALEIFRNIPSPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGL 271
Query: 62 GRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRT 121
+A D+ ++LH++ D V P+ + F +++ +A E A + M N + +
Sbjct: 272 CKASKTDKASEMLHEMV-DRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPS 330
Query: 122 VKSLNTLLNALLTCGKLDRMKELFISF-------NLKAIAVL-DGLCSNLKI 165
+ NTL++ L +DR K+L F ++ ++L DGLC +I
Sbjct: 331 CCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRI 382
>gi|224135699|ref|XP_002322139.1| predicted protein [Populus trichocarpa]
gi|222869135|gb|EEF06266.1| predicted protein [Populus trichocarpa]
Length = 866
Score = 45.1 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 69 EMQQILHQLKHDTRVI---PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSL 125
+ Q+ L KH R I P E I+ +IS GR LLE +F+EM + V R+V S
Sbjct: 122 DWQRSLRLFKHMQRQIWCKPNEHIYTIMISLLGREGLLEKCSDIFEEMGAHGVSRSVFSY 181
Query: 126 NTLLNALLTCGK-------LDRMKELFIS 147
L+N+ GK L+RMK+ +S
Sbjct: 182 TALINSYGRNGKYEVSLELLERMKKERVS 210
Score = 40.8 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+ +I G+ + D+ ++IL + + +IP + VI YG+A + E AL
Sbjct: 423 NMETYEGLIFACGKGGLHDDAKKILLHMS-EKGMIPSSKAYTGVIEAYGQAAMYEEALVT 481
Query: 110 FDEMPSFNVQRTVKSLNTLL 129
+ M + T+++ NTL+
Sbjct: 482 LNTMNEMGSKPTIETYNTLI 501
>gi|302768008|ref|XP_002967424.1| hypothetical protein SELMODRAFT_231012 [Selaginella moellendorffii]
gi|300165415|gb|EFJ32023.1| hypothetical protein SELMODRAFT_231012 [Selaginella moellendorffii]
Length = 546
Score = 45.1 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 62/128 (48%), Gaps = 5/128 (3%)
Query: 38 DTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFY 97
+ EA +KP +L+ + +I G+ K + + + +LK + + P+++I+ ++I+ Y
Sbjct: 85 EMEAGGIKP---DLVIFSTLIELAGKVKDYSKATSLFSKLKA-SGIAPDKVIYNSMINLY 140
Query: 98 GRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLD 157
G+A+ + A + EM + S L+NA K K++F+ K I LD
Sbjct: 141 GKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQ-LD 199
Query: 158 GLCSNLKI 165
N+ I
Sbjct: 200 VTTCNMMI 207
Score = 42.7 bits (99), Expect = 0.061, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 55/99 (55%), Gaps = 7/99 (7%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I G+AK + E Q +L ++K + ++P+ + + +I+ Y ++ A QVF EM
Sbjct: 133 YNSMINLYGKAKFYKEAQGLLAEMK-EAGLMPDTVSYTILINAYAESQKYLEAKQVFLEM 191
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMK---ELFISFN 149
+ +Q V + N +++ GKL+ ++ ELF S +
Sbjct: 192 KTKGIQLDVTTCNMMIDVY---GKLEMVRDAEELFWSMS 227
Score = 36.6 bits (83), Expect = 4.1, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQ-ILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQ 108
++ Y++++ + RA+ ++ + +L ++ D ++P++ F +IS YGRA LE A+
Sbjct: 24 SIFAYNVVLKNVLRARQWELAEGLVLEMVEKD--LVPDKFTFSTLISGYGRANRLEDAMG 81
Query: 109 VFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA 154
EM + ++ + +TL+ + LF IA
Sbjct: 82 WLQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLKASGIA 127
>gi|255660912|gb|ACU25625.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
Length = 481
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
++LH K + ALQ F+ E L F +N + II LGRA + + I
Sbjct: 17 NVLHSAKTSEHALQFFRW-------VERSNL--FEHNRETHLKIIEILGRASKLNHARCI 67
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L + E++ + +I YG+ +++ ++++FD M V+RT+KS + L +L
Sbjct: 68 LLDMPKKGLEWDEDM-WVMMIDSYGKQGIVQESVKLFDRMEELGVERTIKSYDALFKVIL 126
Query: 134 TCGKLDRMKELF 145
G+ K F
Sbjct: 127 RRGRYMMAKRYF 138
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD--- 139
+ P+ + + +I+ Y R + + A + F EM N++ TV + TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMXEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 140 RMKELFISFNLKAIAV-----LDGLCSNLKI 165
R+ E F +K A+ L GLC+ K+
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKM 271
>gi|356520989|ref|XP_003529141.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Glycine max]
Length = 682
Score = 45.1 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 42/152 (27%), Positives = 59/152 (38%), Gaps = 26/152 (17%)
Query: 5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRA 64
K SP RL LL +K P AL +F P P H I+ ++
Sbjct: 6 KSLSPHRLLKLLKAEKSPLSALNVFDAA------VRRPGFSPSSAVFHH---ILRRVAAD 56
Query: 65 KMFDEMQQILHQLKHDTRVI-------PEEIIFCNVISFYGRARLLEHALQVFDEMPS-F 116
L H R+I PE++ ++ Y + R+ AL VF MP F
Sbjct: 57 PGL--------LLAHAPRIIAAIHCPCPEDVPL-TLLKAYAKTRMPNEALHVFQTMPHVF 107
Query: 117 NVQRTVKSLNTLLNALLTCGKLDRMKELFISF 148
T++S NTLLNA + + R + F F
Sbjct: 108 GCSPTIRSFNTLLNAFVESHQWARAENFFKYF 139
>gi|255660942|gb|ACU25640.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 484
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 10/132 (7%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
++LH K+ + ALQ F+ E L F +N + II LGRA + + I
Sbjct: 17 NVLHSAKNSEHALQFFRW-------VERSNL--FEHNRETHLKIIEILGRASKLNHARCI 67
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L + E++ + +I YG+A +++ ++++F +M V+RT+KS + L +L
Sbjct: 68 LLDMPKKGLEWDEDL-WVLMIDSYGKAGIVQESVKMFQKMEELGVERTIKSYDALFKVIL 126
Query: 134 TCGKLDRMKELF 145
G+ K F
Sbjct: 127 RRGRYMMAKRYF 138
Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD--- 139
++P+ + + +++ Y R + +E A + F EM N++ TV + TL+ ++ ++D
Sbjct: 181 IMPDVVTYNTMVNGYCRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDAL 240
Query: 140 RMKELFISFNLKAIAV-----LDGLCSNLKI 165
R+ E F +K A+ L GLC+ K+
Sbjct: 241 RLVEEMKGFGMKPNAITYSTLLPGLCNAEKM 271
>gi|255553861|ref|XP_002517971.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542953|gb|EEF44489.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1029
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 26/113 (23%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
K + N++HY++++ LGRA+ +D++++ ++ + V+P + ++ YG+A L+
Sbjct: 175 KDYVPNVIHYNIVLRALGRAQKWDDLRRCWIEMA-KSGVLPTNNTYGMLVDVYGKAGLVT 233
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLD 157
AL M + ++NT++ L G+ DR + + + I + D
Sbjct: 234 EALLWIKHMKLRGLFPDEVTMNTVVKVLKDAGEFDRAHSFYKDWCIGKIELDD 286
>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 621
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 66/127 (51%), Gaps = 8/127 (6%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +IT L +A DE Q+L +++ + P+ I + +I+ G+A LL A ++
Sbjct: 288 DVVTYSCLITGLIKASQLDEACQVLKKMEKEG-CPPDTITYNTLINGLGKAGLLNDAGRL 346
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF-NLKAIAVLDGL---CSNLKI 165
FD M S V + +TL+ AL GK R++ + F ++++ + L CS + +
Sbjct: 347 FDRMKSKGCNPDVVTYSTLITAL---GKAARVESACVLFEEMESVGIQPDLFTYCSIITV 403
Query: 166 IMNDSQV 172
+ QV
Sbjct: 404 LGKAGQV 410
Score = 43.1 bits (100), Expect = 0.041, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 15/103 (14%)
Query: 50 NLLHYDLIITKLGRAK-------MFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARL 102
+++ Y +IT LG+A +F+EM+ + Q P+ +C++I+ G+A
Sbjct: 358 DVVTYSTLITALGKAARVESACVLFEEMESVGIQ--------PDLFTYCSIITVLGKAGQ 409
Query: 103 LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
++ A ++F EM + V + N LN+L G+ +++F
Sbjct: 410 VDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIF 452
Score = 42.4 bits (98), Expect = 0.064, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 38 DTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFY 97
+ +A KP NL Y+ ++ LG+A FDE ++L +++ D +P+ + +IS
Sbjct: 69 EMQAKGCKP---NLWTYNTLVDCLGKAGQFDEALRLLAEMR-DNGCVPDVRTYNCLISTL 124
Query: 98 GRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
G+A L A +F EM + N+L+ L G+ + EL
Sbjct: 125 GKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELL 172
Score = 42.0 bits (97), Expect = 0.10, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I LG+A + ++ ++ ++K P+ + + +I+ G+A +E A +F+EM
Sbjct: 327 YNTLINGLGKAGLLNDAGRLFDRMKSKG-CNPDVVTYSTLITALGKAARVESACVLFEEM 385
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA 154
S +Q + + +++ L G++D LF K ++
Sbjct: 386 ESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLS 426
Score = 41.6 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ ++ L +A +E Q + +LK + P+ + + +I+ GRA E AL+V
Sbjct: 8 NVVTYNSLLNALAKAGQCEEAQLLFEELKA-AKWTPDVVSYSCLINSLGRAGKWEAALEV 66
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
EM + + + + NTL++ L G+ D L
Sbjct: 67 VAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLL 102
>gi|308081032|ref|NP_001183205.1| hypothetical protein [Zea mays]
gi|238010036|gb|ACR36053.1| unknown [Zea mays]
gi|414876173|tpg|DAA53304.1| TPA: hypothetical protein ZEAMMB73_741646 [Zea mays]
Length = 629
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 84 IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKE 143
+P + VI+ A ++ AL+VF +PS V+RT + N L AL + G+ D+++
Sbjct: 171 LPNARTYTVVIAHLASAGFVDQALEVFRILPSLRVRRTTRQYNVLAEALASGGRFDQLRW 230
Query: 144 LFISFNLKAIAVLDGL 159
L ++ +A +DG+
Sbjct: 231 L-----VREMAAVDGV 241
>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 7/119 (5%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLL 103
LK NL+ +++II L R E ++L ++ V P+E+ + +++ Y +
Sbjct: 46 LKGLEPNLITFNMIINGLCRDGRLKETSEVLVEMSRKGYV-PDEVTYNTLVNGYCKEGNF 104
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSN 162
AL + EM + V + +L+N++ G L+R E F +++ GLC N
Sbjct: 105 HQALVLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVR------GLCPN 157
>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 819
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLL 103
L F +++ Y+ +I+ R M DE ++ +Q+ + P+ + ++S + RA +
Sbjct: 342 LNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMA-EKGTKPDVFTYTTLLSGFERAGKV 400
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA 154
E A+ +F+EM + + + + N + GK M ++F N+ ++
Sbjct: 401 ESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLS 451
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ ++ ++ G+ M E+ + ++K +PE F +IS Y R E A+ V
Sbjct: 453 DIVTWNTLLAVFGQNGMDSEVSGVFKEMKR-AGFVPERETFNTLISAYSRCGSFEQAMTV 511
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLC 160
+ M V + + NT+L AL G ++ +++ DG C
Sbjct: 512 YRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEME-------DGRC 555
Score = 39.7 bits (91), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+L Y+ ++ L R M+++ +++L +++ D R P E+ +C+++ Y + + +
Sbjct: 523 DLSTYNTVLAALARGGMWEQSEKVLAEME-DGRCKPNELTYCSLLHAYANGKEIGLMHSL 581
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN 149
+E+ S ++ L TL +L C K D + E +F+
Sbjct: 582 AEEVYSGVIEPRAVLLKTL---VLVCSKCDLLPEAERAFS 618
Score = 36.6 bits (83), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +IT R + E Q+ ++K +++ + ++ YG++ + A++V +EM
Sbjct: 282 YNTLITCCKRGSLHQEAAQVFEEMKA-AGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEM 340
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
++ + N+L++A G LD EL
Sbjct: 341 VLNGFSPSIVTYNSLISAYARDGMLDEAMEL 371
>gi|224473925|gb|ACN49188.1| ATP binding protein [Triticum aestivum]
Length = 352
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLL 103
+ FR + + Y +++ LG DE + + +++ D P+E ++ ++ +G+A +
Sbjct: 27 IAGFRPDKITYSIVMEVLGHCGHLDEAEAVFLEMRRDW--APDEPVYGLLVDLWGKAGNV 84
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ AL + M +Q V + N+LL+A L KL+R ++ +
Sbjct: 85 DKALGWYHAMLQDGLQPNVPTCNSLLSAFL---KLNRFQDAY 123
>gi|125537564|gb|EAY84052.1| hypothetical protein OsI_39281 [Oryza sativa Indica Group]
Length = 762
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 54/99 (54%), Gaps = 5/99 (5%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
FR + + Y +++ LG DE + + +++HD P+E ++ ++ +G+A ++ A
Sbjct: 537 FRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRHDW--APDEPVYGLLVDLWGKAGNVDKA 594
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
L + M +Q V + N+LL+A L K++R ++ +
Sbjct: 595 LGWYHAMLQDGLQPNVPTCNSLLSAFL---KINRFQDAY 630
Score = 42.7 bits (99), Expect = 0.051, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+++ Y +I LG+A+ F M+++L ++ + P + + +I YGRA L A
Sbjct: 362 FKHDGHSYTTMIGILGQARQFGTMRKLLDEM-NSVHCKPTVVTYNRIIHAYGRANYLREA 420
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD-------RMKELFIS 147
++VF+EM + + TL++ G L+ RM+E+ +S
Sbjct: 421 VKVFEEMQKAGYEPDRVTYCTLIDIHAKGGYLEVAMDLYTRMQEVGLS 468
>gi|226493231|ref|NP_001140656.1| hypothetical protein [Zea mays]
gi|194700420|gb|ACF84294.1| unknown [Zea mays]
gi|414587025|tpg|DAA37596.1| TPA: hypothetical protein ZEAMMB73_567962 [Zea mays]
Length = 598
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ ++ L A +++ ++++ ++ + R +P+ F +ISF+ + L+ A +V
Sbjct: 372 DIVTYNTVLKGLCSADRWEDAEELMIKMSQNDR-LPDNSTFNTIISFWCQKGLILQAFEV 430
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F +MP + +T++ L GK+++ EL
Sbjct: 431 FKQMPEKGCNPNSTTYSTIIGGLTKAGKMEQALELL 466
>gi|242062226|ref|XP_002452402.1| hypothetical protein SORBIDRAFT_04g025130 [Sorghum bicolor]
gi|241932233|gb|EES05378.1| hypothetical protein SORBIDRAFT_04g025130 [Sorghum bicolor]
Length = 506
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 6/100 (6%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +I+T L + + F+E + ++K + P+ + + +I+ GRA L A QV
Sbjct: 294 NVITYTMIMTSLTKCERFEEALSVSDRMK-SSGCKPDTLFYNALINLLGRAGHLFEANQV 352
Query: 110 FD-EMPSFNVQRTVKSLNTLLNALLTCGK----LDRMKEL 144
F EMP V R V + NT+++ L G+ LD +KE+
Sbjct: 353 FRVEMPRNVVPRNVATYNTMISILCQYGRDDDALDVLKEM 392
>gi|116310235|emb|CAH67244.1| OSIGBa0140O07.12 [Oryza sativa Indica Group]
Length = 581
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 46/92 (50%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+++I+ L R ++L +L+ D +P + F +VIS Y +A LE A+ V+++M
Sbjct: 287 HNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDM 346
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ + + N L+N G L E++
Sbjct: 347 VASGIMPNTVTYNVLINGYGKVGDLGSAVEVY 378
>gi|407864764|gb|EKG08031.1| hypothetical protein TCSYLVIO_000834 [Trypanosoma cruzi]
Length = 994
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 58/102 (56%), Gaps = 5/102 (4%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP-EEIIFCNVISFYGRARLL 103
K + N + ++++ GRA+ F+ M++I+ Q K + IP +++I+C + + YGRARL
Sbjct: 766 KGYTNNAVTHNILADGYGRARRFERMEEIVQQRK--SSGIPMDDLIYCIMATSYGRARLK 823
Query: 104 EHALQVFDEMPSFNVQR--TVKSLNTLLNALLTCGKLDRMKE 143
+ +++ E+ S + T K + + ++A C D M++
Sbjct: 824 KEVHRLYTEVTSPTSRHLFTRKVIWSFVDAFCRCTAPDDMEK 865
>gi|168054024|ref|XP_001779433.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669118|gb|EDQ55711.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 570
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++ GRA I ++K + V P+ I++ +I+ GRA + HAL+VF+EM
Sbjct: 151 YGTMVRLFGRAGYIRAAVSIFEEMK-GSGVQPDAIVYNIMIACLGRAGRMGHALKVFEEM 209
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
V+ +L+T++ CG + E+F
Sbjct: 210 EREGVKPNAVTLSTVMETYSRCGNVMEGLEVF 241
Score = 36.6 bits (83), Expect = 3.9, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +I G+ +DE + ++K P+++ + ++ +GRA + A+ +
Sbjct: 112 DVVTYSTMIDVYGKMGKYDEAIALYERVKQ-AGWKPDKVTYGTMVRLFGRAGYIRAAVSI 170
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F+EM VQ N ++ L G++ ++F
Sbjct: 171 FEEMKGSGVQPDAIVYNIMIACLGRAGRMGHALKVF 206
>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Cucumis sativus]
Length = 1032
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 11/116 (9%)
Query: 54 YDLIITKLGR-AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDE 112
Y II L + K + M L LK T V+P+ ++ ++IS + + +E A Q++DE
Sbjct: 629 YSAIIHSLSKNGKTKEAMGVFLKFLK--TGVVPDVFLYNSLISGFCKEGDIEKASQLYDE 686
Query: 113 MPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLC 160
M + + NTL+N L G++ + +ELF K + ++DG C
Sbjct: 687 MLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYC 742
>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1113
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 4/108 (3%)
Query: 38 DTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFY 97
+ E+ LKP N+ Y + I LGRA DE +I+ +++ D P+ + + +I
Sbjct: 254 EMESLGLKP---NIYTYTICIRVLGRAGRIDEACRIMKRMEDDG-CGPDVVTYTVLIDAL 309
Query: 98 GRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
A L+ A+++F +M + + + + T+L+ CG L R+KE +
Sbjct: 310 CTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFW 357
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 9/120 (7%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y++++ +A DE ++L + + + P+ I+ ++I+ +A ++ A ++F +
Sbjct: 512 YNMMMKCYSKAGQVDEAIELLSDMSEN-QCEPDIIVINSLINTLYKAGRVDEAWKMFCRL 570
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLCSNLKI 165
+ TV + NTL+ L G++ R ELF S +LD LC N ++
Sbjct: 571 KDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEV 630
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
NL Y+ +I+ L R D+ + + ++ V+P + I FYG++ + AL+
Sbjct: 403 NLHTYNTLISGLLRVNRLDDALDLFNNME-TLGVVPTAYTYILFIDFYGKSGRSDKALET 461
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F++M + + + N L +L G+L K +F
Sbjct: 462 FEKMKIRGIAPNIVACNASLYSLAEMGRLREAKVIF 497
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDT---RVIPEEIIFCNVISFYGRARLLEHA 106
++ Y+L++ G++ +E+ ++ Q+ + I II N++ ++ L+ A
Sbjct: 824 DVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLV----KSNSLDKA 879
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
L +F ++ S + T + LL+ LL G+L+ KELF
Sbjct: 880 LDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELF 918
>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
Length = 700
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 69/124 (55%), Gaps = 5/124 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+L++ L R+ DE +++++ L++ + P+ + + +IS + AL++
Sbjct: 543 SIVTYNLLLKGLCRSSQIDEAEELIYTLRNQG-LRPDVVSYNTIISACCNKGDTDKALEL 601
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMND 169
EM + ++ T+++ +TL++AL + G++ M+ L+ K + S++ IM D
Sbjct: 602 LQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEP----SSSIYGIMVD 657
Query: 170 SQVR 173
+ VR
Sbjct: 658 AYVR 661
Score = 37.0 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 20/111 (18%)
Query: 41 APPLKPFRYNLLHYDLIITKLGRA-------KMFDEMQQILHQLKHDTRVIPEEIIFCNV 93
APP F YN+ +I L R+ K+FDEM D V+P I + +
Sbjct: 189 APPPDAFSYNV-----VIAGLWRSGKGSDALKVFDEMV--------DMGVVPNWITYNTM 235
Query: 94 ISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
I + + LE ++ D+M + + + N LL+ L G++D + L
Sbjct: 236 IDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVL 286
Score = 36.2 bits (82), Expect = 5.2, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 71 QQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLN 130
+Q+L L H T ++P +I+ +I+ Y + R L A +F++M S +++ + N L+N
Sbjct: 354 EQVLEMLVH-TGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALIN 412
Query: 131 ALLTCGKLDRMKELFI 146
L + + ++L +
Sbjct: 413 GLCKLEMVTKAEDLVM 428
>gi|224085974|ref|XP_002307761.1| predicted protein [Populus trichocarpa]
gi|222857210|gb|EEE94757.1| predicted protein [Populus trichocarpa]
Length = 563
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I LGR K D M + LH+L+ + + E F VI RAR + A+Q+F +
Sbjct: 170 YNVVIRALGRRKFIDFMVKFLHELRVEGVSMNSE-TFSIVIDSLVRARRVYKAIQMFGNL 228
Query: 114 -PSFNVQRTVKSLNTLLNAL 132
F +R +SLN LL L
Sbjct: 229 EEEFGFERDAESLNVLLQCL 248
>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
Length = 669
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+ + Y ++ L RA+ +D+ +++L+++ + P E+ F I + L+E A+ +
Sbjct: 352 DTISYTTVLKGLCRAERWDDAKELLNEMVRNN-CPPNEVTFNTFICILCQKGLIEQAIML 410
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA-----IAVLDGLCS 161
++M V + N L+N G +D ELF S K +L GLC+
Sbjct: 411 IEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCKPNTITYTTLLTGLCN 467
Score = 44.3 bits (103), Expect = 0.021, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 59/126 (46%), Gaps = 9/126 (7%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARL 102
P F+ + + Y ++ L +K +D+++++ ++ + +P E+ F +I F+ R +
Sbjct: 240 PSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMM-EKNCMPNEVTFDMLIRFFCRGGM 298
Query: 103 LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF--------NLKAIA 154
+E A+QV ++M N ++N++ G++D +L +
Sbjct: 299 VERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTT 358
Query: 155 VLDGLC 160
VL GLC
Sbjct: 359 VLKGLC 364
Score = 36.2 bits (82), Expect = 4.6, Method: Composition-based stats.
Identities = 32/129 (24%), Positives = 61/129 (47%), Gaps = 17/129 (13%)
Query: 18 LQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQ- 76
+Q H AL+LF+ + P KP N + Y ++T L A+ D +++ +
Sbjct: 435 VQGHIDSALELFR----------SMPCKP---NTITYTTLLTGLCNAERLDGAAELVAEM 481
Query: 77 LKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLT-C 135
L+ D P + F ++SF+ + LE A+++ ++M + + NTLL+ + C
Sbjct: 482 LRGDCP--PNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDC 539
Query: 136 GKLDRMKEL 144
D ++ L
Sbjct: 540 SSEDALELL 548
>gi|449505568|ref|XP_004162510.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial-like [Cucumis sativus]
Length = 614
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 64/138 (46%), Gaps = 11/138 (7%)
Query: 46 PFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEH 105
P+R++ Y+ ++ LG+AK F M +++ ++ H + E + VI RA +
Sbjct: 225 PYRHSPESYNSMVDILGKAKNFRLMWELVDEMNHLAGSVSLETM-SKVIRRLARAGRHQE 283
Query: 106 ALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF------ISFNLKAIAVL-DG 158
A+ F + + + ++N L++AL+ ++ +F I FNL + VL G
Sbjct: 284 AIHAFRNIEKYGISTDTTAMNVLMDALVKEASVEDAHNVFRELKCSIPFNLASFNVLIHG 343
Query: 159 LCSNLKIIMNDSQVRVTG 176
C K+ D ++ G
Sbjct: 344 YCKAKKL---DEAWKIMG 358
Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 29 FKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEI 88
F+N + E KP N++ + +I+ LG+AK +E ++ ++K + +P+
Sbjct: 385 FRNVDKVLVQMEHKGCKP---NVITFTIIMHALGKAKQINEALKVYEKMKKEG-CVPDSS 440
Query: 89 IFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA 131
+ ++I G+A L ++ ++M V V + NTL++
Sbjct: 441 FYSSLIFILGKAGRLTDVKEIVEDMEKQGVTPDVLTYNTLISC 483
>gi|356555650|ref|XP_003546143.1| PREDICTED: pentatricopeptide repeat-containing protein At1g61870,
mitochondrial-like [Glycine max]
Length = 388
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 7/97 (7%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRV-IPEEIIFCNVISFYGRARLLEHALQVFDE 112
+ L ++KL A F ++ L LK TR + E + I YG+A +L+HA++ F E
Sbjct: 66 FSLAVSKLAAAHHFAGIRTFLDDLK--TRPDLRNEKFLSHAIVLYGQANMLDHAIRTFTE 123
Query: 113 -MPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF 148
+PS R+VK+LN+LL A L + +++ F
Sbjct: 124 DLPS---PRSVKTLNSLLFAALLAKNYKELTRIYLEF 157
>gi|242053565|ref|XP_002455928.1| hypothetical protein SORBIDRAFT_03g027395 [Sorghum bicolor]
gi|241927903|gb|EES01048.1| hypothetical protein SORBIDRAFT_03g027395 [Sorghum bicolor]
Length = 537
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 89 IFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF 148
+ +++ FYG+ +E A VFD MP +RTV + NT+L A + G++D ELF
Sbjct: 211 VMSSLVDFYGKCGEVEDARAVFDAMP----ERTVVTWNTMLMAYIHNGRIDEAVELFYEM 266
Query: 149 NLKAI 153
++ +
Sbjct: 267 RVEGV 271
>gi|222622668|gb|EEE56800.1| hypothetical protein OsJ_06387 [Oryza sativa Japonica Group]
Length = 540
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I R D+++ + D ++P+++ +C++I GRA E ALQVF++M
Sbjct: 252 YNEVIGGWARFGRVDKVEHFWETMLEDG-LVPDQVSYCHLIEALGRANRAEEALQVFEKM 310
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDR 140
T + N L+ ++ G DR
Sbjct: 311 VHEGYCPTTMAYNALIFNFISVGNFDR 337
>gi|218190552|gb|EEC72979.1| hypothetical protein OsI_06882 [Oryza sativa Indica Group]
Length = 541
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I R D+++ + D ++P+++ +C++I GRA E ALQVF++M
Sbjct: 253 YNEVIGGWARFGRVDKVEHFWETMLEDG-LVPDQVSYCHLIEALGRANRAEEALQVFEKM 311
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDR 140
T + N L+ ++ G DR
Sbjct: 312 VHEGYCPTTMAYNALIFNFISVGNFDR 338
>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]
Length = 703
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 10/120 (8%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
NL Y++++ L D + L+ +V P+ I + ++ + L+HAL +
Sbjct: 157 NLQTYNIVLRSLCARGDLDRAVTLFDSLRR-RQVAPDCITYSTLMCGLAKQDRLDHALDL 215
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF--------NLKAIAV-LDGLC 160
DEMP VQ V N LL G+ +++ ++ NL V LDGLC
Sbjct: 216 LDEMPRSGVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLC 275
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
NL Y+++I L + M DE ++ L+ D IP+ + F +I + A +
Sbjct: 367 NLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTI 426
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKL 138
F+E Q V S ++++N L G+L
Sbjct: 427 FEEARVSGKQLDVFSYSSMINGLCNVGRL 455
>gi|302781572|ref|XP_002972560.1| hypothetical protein SELMODRAFT_32515 [Selaginella moellendorffii]
gi|300160027|gb|EFJ26646.1| hypothetical protein SELMODRAFT_32515 [Selaginella moellendorffii]
Length = 341
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I L R KM ++ Q++L L H+ + + + +I+ + +A +++ A+ +F EM
Sbjct: 151 YTVVIDALLRVKMDEQAQKVL-DLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEM 209
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153
P+ V + N++++ GK++ +LF + I
Sbjct: 210 PTRGCIPDVVTYNSVVDGFCKAGKVEEANKLFAEMKARGI 249
>gi|255660884|gb|ACU25611.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
Length = 484
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
++LH K + ALQ F+ E L F +N + II LGRA + + I
Sbjct: 17 NVLHSSKTSEHALQFFRW-------VERSNL--FEHNRETHLKIIEILGRASKLNHARCI 67
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L + E++ + +I YG+ +++ ++++F +M V+RT+KS N L +L
Sbjct: 68 LLDMPKKGLEWDEDM-WVMMIDSYGKEXIVQESVKMFQKMEELGVERTIKSYNALFKVIL 126
Query: 134 TCGKLDRMKELF 145
G+ K F
Sbjct: 127 RRGRYMMAKRYF 138
Score = 39.3 bits (90), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD--- 139
+ P+ + + +I+ Y R + +E A + F EM N++ TV + TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 140 RMKELFISFNLKAIAV-----LDGLCS 161
R+ E F +K A+ L GLC+
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCN 267
>gi|255660914|gb|ACU25626.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
Length = 481
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 20/137 (14%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDL-----IITKLGRAKMFD 68
++LH K + ALQ F+ R NL +D II LGRA +
Sbjct: 17 NVLHAAKTSEHALQFFRWVE--------------RSNLFEHDRETHLKIIEILGRASKLN 62
Query: 69 EMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTL 128
+ IL + E++ + +I YG+A +++ ++++F +M V+RT+KS + L
Sbjct: 63 HARCILLDMPKKGLEWDEDM-WVLMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDAL 121
Query: 129 LNALLTCGKLDRMKELF 145
++ G+ K F
Sbjct: 122 FKVIMRRGRFMMAKRYF 138
Score = 37.0 bits (84), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I R K DE ++ ++K + P + + +I Y + AL++
Sbjct: 184 DVVTYNTMINGCYRVKKMDEAEKYFVEMK-GKNIEPTVVTYTTLIKGYVSVDQVHDALRL 242
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLD 157
+EM + ++ + +TLL L GK+ + + K IA D
Sbjct: 243 VEEMKGYGIKPNAITYSTLLPGLCNAGKMSEAQSILKEMVDKYIAPKD 290
>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
gi|219887141|gb|ACL53945.1| unknown [Zea mays]
Length = 522
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+L++ L R+ DE +++++ L++ + P+ + + +IS + AL++
Sbjct: 365 SIVTYNLLLKGLCRSSQIDEAEELIYTLRNQG-LRPDVVSYNTIISACCNKGDTDKALEL 423
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
EM + ++ T+++ +TL++AL + G++ M+ L+
Sbjct: 424 LQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLY 459
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 10/107 (9%)
Query: 41 APPLKPFRYNLLHYDLIITKLGRA--KMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYG 98
APP F YN++ L + G K+FDEM D V+P I + +I +
Sbjct: 11 APPPDAFSYNVVIAGLWRSGKGSDALKVFDEMV--------DMGVVPNWITYNTMIDGHV 62
Query: 99 RARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ LE ++ D+M + + + N LL+ L G++D + L
Sbjct: 63 KGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLM 109
Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 71 QQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLN 130
+Q+L L H T ++P +I+ +I+ Y + R L A +F++M S +++ + N L+N
Sbjct: 176 EQVLEMLVH-TGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALIN 234
Query: 131 ALLTCGKLDRMKELFISFNLKAI 153
L + + ++L + +
Sbjct: 235 GLCKLEMVTKAEDLVMEMEKSGV 257
>gi|255660936|gb|ACU25637.1| pentatricopeptide repeat-containing protein [Citharexylum
ligustrinum]
Length = 484
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
++LH K + ALQ F+ E L F +N + II LGRA + + I
Sbjct: 17 NVLHGSKKSEHALQFFRW-------VERSNL--FEHNRETHLKIIEILGRASKLNHARCI 67
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L + E++ + +I YG+A +++ ++++F +M V+RT+KS + L +L
Sbjct: 68 LLDMPKKGLEWDEDL-WVLMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDVLFKVIL 126
Query: 134 TCGKLDRMKELF 145
G+ K F
Sbjct: 127 RRGRYMMAKRYF 138
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD--- 139
+ P+ I + +I+ Y R + +E A + F EM N++ TV + TL+ ++ ++D
Sbjct: 181 ITPDVITYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTXTTLIKGYVSVDRVDDAL 240
Query: 140 RMKELFISFNLKAIAV-----LDGLCSNLKI 165
R+ E F +K A+ L GLC+ K+
Sbjct: 241 RLXEEMKGFGIKPNAITYSTLLPGLCNAEKM 271
>gi|255583417|ref|XP_002532468.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527826|gb|EEF29924.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 510
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 62/129 (48%), Gaps = 12/129 (9%)
Query: 22 PKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT 81
P A++ F+ D +P ++L++ LG+ +FD M + +K +
Sbjct: 109 PGPAVKFFRWAGFRLQDNHSP---------YSWNLVVDLLGKNCLFDAMWDAIKSMK--S 157
Query: 82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGK-LDR 140
+ + F +V Y A ++ A+ F+ M + V R V +LN+LL+A+ GK +D
Sbjct: 158 KELVSLATFASVFGSYVTAGRVKDAIFTFEVMNQYGVVRDVVALNSLLSAICRDGKTVDA 217
Query: 141 MKELFISFN 149
+ LF++ N
Sbjct: 218 VDFLFVAKN 226
>gi|413921112|gb|AFW61044.1| hypothetical protein ZEAMMB73_032153 [Zea mays]
Length = 332
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 67 FDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLN 126
+ E+ I Q++ TR+ P+ + + +I YG+AR E AL VF+EM V+ T KS N
Sbjct: 262 YKEVSSIYDQMER-TRLKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYN 320
Query: 127 TLLNALLTCG 136
L +A G
Sbjct: 321 ILPDAFGIPG 330
>gi|449442128|ref|XP_004138834.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial-like [Cucumis sativus]
Length = 591
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 64/138 (46%), Gaps = 11/138 (7%)
Query: 46 PFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEH 105
P+R++ Y+ ++ LG+AK F M +++ ++ H + E + VI RA +
Sbjct: 202 PYRHSPESYNSMVDILGKAKNFRLMWELVDEMNHLAGSVSLETM-SKVIRRLARAGRHQE 260
Query: 106 ALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF------ISFNLKAIAVL-DG 158
A+ F + + + ++N L++AL+ ++ +F I FNL + VL G
Sbjct: 261 AIHAFRNIEKYGISTDTTAMNVLMDALVKEASVEDAHNVFRELKCSIPFNLASFNVLIHG 320
Query: 159 LCSNLKIIMNDSQVRVTG 176
C K+ D ++ G
Sbjct: 321 YCKAKKL---DEAWKIMG 335
Score = 37.0 bits (84), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 29 FKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEI 88
F+N + E KP N++ + +I+ LG+AK +E ++ ++K + +P+
Sbjct: 362 FRNVDKVLVQMEHKGCKP---NVITFTIIMHALGKAKQINEALKVYEKMKKEG-CVPDSS 417
Query: 89 IFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA 131
+ ++I G+A L ++ ++M V V + NTL++
Sbjct: 418 FYSSLIFILGKAGRLTDVKEIVEDMEKQGVTPDVLTYNTLISC 460
>gi|255660896|gb|ACU25617.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
Length = 484
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
++LH K + ALQ F+ E L F +N + II LGRA + + I
Sbjct: 17 NVLHSSKTSEHALQFFRW-------VERSNL--FEHNRETHLKIIEILGRASKLNHARCI 67
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L + E++ + +I YG+ +++ ++++F +M V+RT+KS N L +L
Sbjct: 68 LLDMPKKGLEWDEDM-WVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVIL 126
Query: 134 TCGKLDRMKELF 145
G+ K F
Sbjct: 127 RRGRYMMAKRYF 138
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD--- 139
+ P+ + + +I+ Y R + +E A + F EM N++ TV + TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 140 RMKELFISFNLKAIAV-----LDGLCSNLKIIMNDSQVRV 174
R+ E F +K A+ L GLC+ K+ S+ RV
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKM----SEARV 276
>gi|255660882|gb|ACU25610.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
Length = 484
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
++LH K + ALQ F+ E L F +N + II LGRA + + I
Sbjct: 17 NVLHSSKTSEHALQFFRW-------VERSNL--FEHNRETHLKIIEILGRASKLNHARCI 67
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L + E++ + +I YG+ +++ ++++F +M V+RT+KS N L +L
Sbjct: 68 LLDMPKKGLEWDEDM-WVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVIL 126
Query: 134 TCGKLDRMKELF 145
G+ K F
Sbjct: 127 RRGRYMMAKRYF 138
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD--- 139
+ P+ + + +I+ Y R + +E A + F EM N++ TV + TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 140 RMKELFISFNLKAIAV-----LDGLCSNLKIIMNDSQVRV 174
R+ E F +K A+ L GLC+ K+ S+ RV
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKM----SEARV 276
>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
Length = 700
Score = 44.7 bits (104), Expect = 0.016, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 69/124 (55%), Gaps = 5/124 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+L++ L R+ DE +++++ L++ + P+ + + +IS + AL++
Sbjct: 543 SIVTYNLLLKGLCRSSQIDEAEELIYTLRNQG-LRPDVVSYNTIISACCNKGDTDKALEL 601
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMND 169
EM + ++ T+++ +TL++AL + G++ M+ L+ K + S++ IM D
Sbjct: 602 LQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQMLHKNVEP----SSSIYGIMVD 657
Query: 170 SQVR 173
+ VR
Sbjct: 658 AYVR 661
>gi|384247929|gb|EIE21414.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
Length = 448
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
NL+ Y+++I G+ + E Q+L L+ D PE + ++S R+ EHAL+V
Sbjct: 142 NLVTYNILIDIHGKMGNWQEAVQVLDALE-DQGTKPEVRTYNTILSACNRSGQPEHALRV 200
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
++ M + Q T + L++A GK++ +F
Sbjct: 201 YERMLADGAQPTATTYTALISAYGKTGKIEEALRIF 236
>gi|255660886|gb|ACU25612.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
Length = 484
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
++LH K + ALQ F+ E L F +N + II LGRA + + I
Sbjct: 17 NVLHSSKTSEHALQFFRW-------VERSNL--FEHNRETHLKIIEILGRASKLNHARCI 67
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L + E++ + +I YG+ +++ ++++F +M V+RT+KS N L +L
Sbjct: 68 LLDMPKKGLEWDEDM-WVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVIL 126
Query: 134 TCGKLDRMKELF 145
G+ K F
Sbjct: 127 RRGRYMMAKRYF 138
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD--- 139
+ P+ + + +I+ Y R + +E A + F EM N++ TV + TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 140 RMKELFISFNLKAIAV-----LDGLCSNLKIIMNDSQVRV 174
R+ E F +K A+ L GLC+ K+ S+ RV
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKM----SEARV 276
>gi|255660898|gb|ACU25618.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
Length = 484
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
++LH K + ALQ F+ E L F +N + II LGRA + + I
Sbjct: 17 NVLHSSKTSEHALQFFRW-------VERSNL--FEHNRETHLKIIEILGRASKLNHARCI 67
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L + E++ + +I YG+ +++ ++++F +M V+RT+KS N L +L
Sbjct: 68 LLDMPKKGLEWDEDM-WVMMIDSYGKZGIVQESVKMFQKMEELGVERTIKSYNALFKVIL 126
Query: 134 TCGKLDRMKELF 145
G+ K F
Sbjct: 127 RRGRYMMAKRYF 138
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD--- 139
+ P+ + + +I+ Y R + +E A + F EM N++ TV + TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 140 RMKELFISFNLKAIAV-----LDGLCSNLKIIMNDSQVRV 174
R+ E F +K A+ L GLC+ K+ S+ RV
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKM----SEARV 276
>gi|255660878|gb|ACU25608.1| pentatricopeptide repeat-containing protein [Verbena hispida]
Length = 484
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
++LH K + ALQ F+ E L F +N + II LGRA + + I
Sbjct: 17 NVLHSSKTSEHALQFFRW-------VERSNL--FEHNRETHLKIIEILGRASKLNHARCI 67
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L + E++ + +I YG+ +++ ++++F +M V+RT+KS N L +L
Sbjct: 68 LLDMPKKGLEWDEDM-WVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVIL 126
Query: 134 TCGKLDRMKELF 145
G+ K F
Sbjct: 127 RRGRYMMAKRYF 138
Score = 40.4 bits (93), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD--- 139
+ P+ + + +I+ Y R + +E A + F EM N++ TV + TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDXL 240
Query: 140 RMKELFISFNLKAIAV-----LDGLCSNLKIIMNDSQVRV 174
R+ E F +K A+ L GLC+ K+ S+ RV
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKM----SEARV 276
>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
Length = 722
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 63/128 (49%), Gaps = 11/128 (8%)
Query: 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMF 67
+P++L LL L +++LF+ A K + + Y ++I KLG A F
Sbjct: 77 TPYQLCKLLELPLDVPTSMELFQ---------WAGTQKGYCHMFDVYYMLIDKLGAAGEF 127
Query: 68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPS-FNVQRTVKSLN 126
+ +L Q+K + ++ E +F ++ YGRA L A ++ +M ++ + T +S N
Sbjct: 128 KTIDALLMQMKQEG-IVFRESLFILIMKHYGRAGLPGQATRLLLDMRGVYSCEPTFRSYN 186
Query: 127 TLLNALLT 134
+L+ LL
Sbjct: 187 VVLDVLLA 194
>gi|255660866|gb|ACU25602.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
Length = 484
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
++LH K + ALQ F+ E L F +N + II LGRA + + I
Sbjct: 17 NVLHSSKTSEHALQFFRW-------VERSNL--FEHNRETHLKIIEILGRASKLNHARCI 67
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L + E++ + +I YG+ +++ ++++F +M V+RT+KS N L +L
Sbjct: 68 LLDMPKKGLEWDEDM-WVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVIL 126
Query: 134 TCGKLDRMKELF 145
G+ K F
Sbjct: 127 RRGRYMMAKRYF 138
Score = 38.9 bits (89), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD--- 139
+ P+ + + +I+ Y R + +E A + F EM N++ TV + TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 140 RMKELFISFNLKAIAV-----LDGLCSNLKIIMNDSQVRV 174
R+ E F +K + L GLC+ K+ S+ RV
Sbjct: 241 RLVEEMKGFGIKPNTITYSTLLPGLCNAEKM----SEARV 276
>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
gi|194702156|gb|ACF85162.1| unknown [Zea mays]
gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
Length = 567
Score = 44.7 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 59/125 (47%), Gaps = 17/125 (13%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N + Y++++ L A+ +++ ++++ ++ H P + F +ISF R L+E A++V
Sbjct: 270 NTVSYNIVLKGLFTAERWEDAEKLMEEMAHKG-CPPNVVTFNMLISFLCRRGLVEPAMEV 328
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL------------FISFNLKAIAVLD 157
++MP + S N LL+A K+ + E +S+N +L
Sbjct: 329 LEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYN----TLLT 384
Query: 158 GLCSN 162
LC N
Sbjct: 385 ALCRN 389
Score = 39.3 bits (90), Expect = 0.57, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ ++T L R D ++LHQLK D P I + VI +A + AL++
Sbjct: 375 DIVSYNTLLTALCRNGEVDVAIELLHQLK-DKGCSPVLISYNTVIDGLTKAGKTKEALEL 433
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF 148
DEM S +Q + + +T+ + L + DR++E +F
Sbjct: 434 LDEMTSKGLQPDIITYSTIASGLC---REDRIEEAVRTF 469
>gi|168030898|ref|XP_001767959.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680801|gb|EDQ67234.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 957
Score = 44.7 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I +A F + L +++ + I +E+++C++I+ YG+A L E A ++F EM
Sbjct: 285 YTIMINVWSKAGRFASAAETLAEMQR-SGCIADEVVYCSIINMYGKAGLYEEAEKIFKEM 343
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ + KS ++ G+ +LF
Sbjct: 344 DTLGLLSHEKSYTSMAKVRAEAGRHAEALKLF 375
>gi|357125122|ref|XP_003564244.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
chloroplastic-like [Brachypodium distachyon]
Length = 502
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
+ + ++ Y+++I GRA ++M+ I +K D R+ P + C++I YGRA ++
Sbjct: 358 YSWTIVTYNVVIDAFGRAGDLEQMEYIFRLMKSD-RIKPNCVTLCSLIRAYGRADQVKKI 416
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNL 163
V + + + + N L++A G L M ++ L+ ++ C+ +
Sbjct: 417 ETVLRIIENSDTTLDIVFFNCLVDAYGRVGCLAEMWDVLNMMKLERVSPDKVTCTTM 473
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 57/107 (53%), Gaps = 11/107 (10%)
Query: 40 EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLK--HDTRVIPEEIIFCNVISFY 97
+A + P N+ Y++++ G+AKM+++M ++ ++ + + I + + VI +
Sbjct: 319 QASGISP---NIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTI---VTYNVVIDAF 372
Query: 98 GRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
GRA LE +F M S ++ +L +L+ A G+ D++K++
Sbjct: 373 GRAGDLEQMEYIFRLMKSDRIKPNCVTLCSLIRAY---GRADQVKKI 416
>gi|255660934|gb|ACU25636.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
Length = 484
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
++LH K + ALQ F+ E L F +N + II LGRA + + I
Sbjct: 17 NVLHGSKKSEHALQFFRW-------VERSNL--FEHNRETHLKIIEILGRASKLNHARCI 67
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L + E++ + +I YG+A +++ ++++F +M V+RT+KS + L +L
Sbjct: 68 LLDMPKKGLEWDEDL-WVLMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVIL 126
Query: 134 TCGKLDRMKELF 145
G+ K F
Sbjct: 127 RRGRYMMAKRYF 138
Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD--- 139
+ P+ I + +I+ Y R + +E A + F EM N++ TV + TL+ ++ ++D
Sbjct: 181 ISPDVITYNTMINGYYRVKKIEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDAL 240
Query: 140 RMKELFISFNLKAIAV-----LDGLCSNLKI 165
+ E F +K A+ L GLC+ K+
Sbjct: 241 TLLEEMKGFGIKPNAITYSTLLPGLCNAEKM 271
>gi|255660900|gb|ACU25619.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
Length = 481
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
++LH K + ALQ F+ E L F +N + II LGRA + + I
Sbjct: 17 NVLHSSKTSEHALQFFRW-------VERSNL--FEHNRETHLKIIEILGRASKLNHARCI 67
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L + E++ + +I YG+ +++ ++++F +M V+RT+KS N L +L
Sbjct: 68 LLDMPKKGLEWDEDM-WVMMIDSYGKZGIVQESVKMFQKMEELGVERTIKSYNALFKVIL 126
Query: 134 TCGKLDRMKELF 145
G+ K F
Sbjct: 127 RRGRYMMAKRYF 138
Score = 40.0 bits (92), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD--- 139
+ P+ + + I+ Y R + +E A + F EM N++ TV + TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTXINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDXAL 240
Query: 140 RMKELFISFNLKAIAV-----LDGLCSNLKIIMNDSQVRV 174
R+ E F +K A+ L GLC+ K+ S+ RV
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKM----SEARV 276
>gi|255540881|ref|XP_002511505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550620|gb|EEF52107.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 876
Score = 44.3 bits (103), Expect = 0.017, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F ++ Y ++ LGRAK F + ++L Q+ D P + + +I YGRA L A
Sbjct: 376 FNHDGHTYTTMVGILGRAKQFGAINKLLDQMVKDG-CQPNVVTYNRLIHSYGRANYLNDA 434
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ VF+EM + + TL++ G LD E++
Sbjct: 435 VDVFNEMQRVGCEPDRVTYCTLIDIHAKAGFLDFALEMY 473
Score = 44.3 bits (103), Expect = 0.017, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 62/125 (49%), Gaps = 8/125 (6%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+ + + Y +++ LG DE + + ++K V P+E ++ ++ +G+A +E A
Sbjct: 551 FQPDKVTYSIVMEVLGHCGYLDEAEAVFSEMKRKNWV-PDEPVYGLLVDLWGKAGNVEKA 609
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGK-------LDRMKELFISFNLKAIAVLDGL 159
Q + M + ++ V + N+LL+A L K L M EL ++ +L+ +L
Sbjct: 610 WQWYQTMLNTGLRPNVPTCNSLLSAFLRVHKLADAYNLLQSMLELGLNPSLQTYTLLLSC 669
Query: 160 CSNLK 164
C+ +
Sbjct: 670 CTEAR 674
>gi|255559617|ref|XP_002520828.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539959|gb|EEF41537.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 656
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 67/163 (41%), Gaps = 35/163 (21%)
Query: 9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLG------ 62
P SL HL + + K PNP+ T P F + ++ I+ LG
Sbjct: 14 PATFQSLRHLNR----SFSSLKTPNPSKITTRIP-FPVFASDTYESNVKISNLGLRGKVK 68
Query: 63 -RAKMFDEM---------QQILHQLKHDT--------RVIPEEIIFCN--VISFYGRARL 102
K+FDEM I LK+ R IPE + + +IS Y RA
Sbjct: 69 EARKVFDEMPRRDAVSYASMITVYLKNKDLPQAEILFREIPERNVVADSAMISGYVRAGR 128
Query: 103 LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
L+ A QVFD+M V+R V S +L++ G +D LF
Sbjct: 129 LDKARQVFDQM----VERNVFSWTSLVSGYFKIGNVDEAMRLF 167
>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
Length = 609
Score = 44.3 bits (103), Expect = 0.017, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 8/124 (6%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I L + E Q IL Q++ V+P+ + + VI+ ++ +L A ++
Sbjct: 388 DVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKL 447
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA--------VLDGLCS 161
D M V + T+++ L CG+L+ + L A ++ GLC
Sbjct: 448 LDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCK 507
Query: 162 NLKI 165
K+
Sbjct: 508 ARKV 511
Score = 36.6 bits (83), Expect = 3.7, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y II L + +E + +L +K P + + +IS +AR ++ A +V
Sbjct: 459 DVVTYTTIIDGLCKCGRLEEAEYLLQGMKR-AGCAPNVVTYTTLISGLCKARKVDEAERV 517
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
+EM + + + NT++N L G++ ++L
Sbjct: 518 MEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQL 552
>gi|298712182|emb|CBJ33054.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 903
Score = 44.3 bits (103), Expect = 0.017, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARL 102
P+KP N+ +Y+L I ++E +LH ++ V P+ + + V++ G+A
Sbjct: 295 PVKP---NVFNYNLAICTCTDCGEWEEALDLLHFMREVGGVEPDVVTYNIVVAACGKAGQ 351
Query: 103 LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
E A+++F EM ++ V S T ++A +CG + +F
Sbjct: 352 GEKAIEIFREMSEVGIKPDVISFTTAISACGSCGLSEEALSIF 394
>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
Length = 500
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
KP +Y Y +I+ L RA+ + +++ ++ + P+ + + ++I+ Y + ++
Sbjct: 287 KPNKYT---YTTLISGLCRAEKVIQARELFEKMTQAC-IPPDAVAYNSLIAGYCKRGSMD 342
Query: 105 HALQVFDEMPS-FNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAV 155
A +++ EM +Q T+ + NTL++ GKL R EL K +A
Sbjct: 343 EAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAA 394
Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 15/99 (15%)
Query: 54 YDLIITKLGRAK-------MFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
Y ++ L +A+ +FDEM + H P+ ++F +I +A ++ A
Sbjct: 118 YSSLVRALAKARRVDHASSLFDEMIRGGHH--------PDRLMFYELILGLCQAGKVKDA 169
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ F +MP Q V N LL+ L + G+L++ LF
Sbjct: 170 SERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLF 208
>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
Length = 653
Score = 44.3 bits (103), Expect = 0.017, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 61/125 (48%), Gaps = 17/125 (13%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N++ ++ +I L R +F+ + Q+L Q+ D P+ ++ V+ + LE A ++
Sbjct: 259 NVVTFNTLIGYLCRNGLFERVHQVLAQMV-DHGCTPDIRMYATVLDGVCKEGHLEVAHEI 317
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF------------ISFNLKAIAVLD 157
D MPS+ ++ V NT+L L + + ++ +EL ++FN+ ++D
Sbjct: 318 LDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNI----LVD 373
Query: 158 GLCSN 162
C N
Sbjct: 374 FFCQN 378
Score = 37.4 bits (85), Expect = 2.6, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y +I LG+A DE ++L+ + + + P II+ ++ S + + +Q+
Sbjct: 504 DLISYSTVIDGLGKAGKTDEALELLNVMVNKG-MSPNTIIYSSIASALSKEGRINRVIQM 562
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
FD + ++ N ++++L G DR E
Sbjct: 563 FDNIQDVTIRSDAVLYNAVISSLCKRGGTDRAIEFL 598
>gi|71402772|ref|XP_804258.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70867130|gb|EAN82407.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 1121
Score = 44.3 bits (103), Expect = 0.017, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 61/105 (58%), Gaps = 4/105 (3%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP-EEIIFCNVISFYGRARLLEH 105
F+ N + ++++ GRAK ++ +++++ + + ++ IP EE + +++ Y RAR++E
Sbjct: 859 FQENHVTFNILFEGYGRAKRYEHIKELVEERR--SKQIPMEEFGYMGLLNIYSRARMVEE 916
Query: 106 ALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNL 150
++ +EM + V T + L+ + ++ G + RM E +IS L
Sbjct: 917 TSKLVEEMVASGVPFTSRMLSAVASSFSHIGDIPRM-EHYISLLL 960
>gi|255660874|gb|ACU25606.1| pentatricopeptide repeat-containing protein [Verbena canescens]
Length = 484
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
++LH K + ALQ F+ E L F +N + II LGRA + + I
Sbjct: 17 NVLHSSKTSEHALQFFRW-------VERSNL--FEHNRETHLKIIEILGRASKLNHARCI 67
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L + E++ + +I YG+ +++ ++++F +M V+RT+KS N L +L
Sbjct: 68 LLDMPKKGLEWDEDM-WVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVIL 126
Query: 134 TCGKLDRMKELF 145
G+ K F
Sbjct: 127 RRGRYMMAKRYF 138
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD--- 139
+ P+ + + +I+ Y R + +E A + F EM N++ TV + TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 140 RMKELFISFNLKAIAV-----LDGLCSNLKIIMNDSQVRV 174
R+ E F +K A+ L GLC+ K+ S+ RV
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKM----SEARV 276
>gi|255660868|gb|ACU25603.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
Length = 484
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
++LH K + ALQ F+ E L F +N + II LGRA + + I
Sbjct: 17 NVLHSSKTSEHALQFFRW-------VERSNL--FEHNRETHLKIIEILGRASKLNHARCI 67
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L + E++ + +I YG+ +++ ++++F +M V+RT+KS N L +L
Sbjct: 68 LLDMPKKGLEWDEDM-WVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVIL 126
Query: 134 TCGKLDRMKELF 145
G+ K F
Sbjct: 127 RRGRYMMAKRYF 138
Score = 40.4 bits (93), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD--- 139
+ P+ + + +I+ Y R + +E A + F EM N++ TV + TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 140 RMKELFISFNLKAIAV-----LDGLCSNLKIIMNDSQVRV 174
R+ E F +K A+ L GLC+ K+ S+ RV
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKM----SEARV 276
>gi|255660862|gb|ACU25600.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
Length = 484
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
++LH K + ALQ F+ E L F +N + II LGRA + + I
Sbjct: 17 NVLHSSKTSEHALQFFRW-------VERSNL--FEHNRETHLKIIEILGRASKLNHARCI 67
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L + E++ + +I YG+ +++ ++++F +M V+RT+KS N L +L
Sbjct: 68 LLDMPKKGLEWDEDM-WVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVIL 126
Query: 134 TCGKLDRMKELF 145
G+ K F
Sbjct: 127 RRGRYMMAKRYF 138
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD--- 139
+ P+ + + +I+ Y R + +E A + F EM N++ TV + TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 140 RMKELFISFNLKAIAV-----LDGLCSNLKIIMNDSQVRV 174
R+ E F +K A+ L GLC+ K+ S+ RV
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKM----SEARV 276
>gi|255660890|gb|ACU25614.1| pentatricopeptide repeat-containing protein [Glandularia
microphylla]
Length = 484
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
++LH K + ALQ F+ E L F +N + II LGRA + + I
Sbjct: 17 NVLHSSKTSEHALQFFRW-------VERSNL--FEHNRETHLKIIEILGRASKLNHARCI 67
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L + E++ + +I YG+ +++ ++++F +M V+RT+KS N L +L
Sbjct: 68 LLDMPKKGLEWDEDM-WVMMIDSYGKQGIVQESVKMFQKMEELGVERTIKSYNALFKVIL 126
Query: 134 TCGKLDRMKELF 145
G+ K F
Sbjct: 127 RRGRYMMAKRYF 138
Score = 40.4 bits (93), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD--- 139
+ P+ + + +I+ Y R + +E A + F EM N++ TV + TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 140 RMKELFISFNLKAIAV-----LDGLCSNLKIIMNDSQVRV 174
R+ E F +K A+ L GLC+ K+ S+ RV
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKM----SEARV 276
>gi|255660864|gb|ACU25601.1| pentatricopeptide repeat-containing protein [Verbena perennis]
Length = 484
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
++LH K + ALQ F+ E L F +N + II LGRA + + I
Sbjct: 17 NVLHSSKTSEHALQFFRW-------VERSNL--FEHNRETHLKIIEILGRASKLNHARCI 67
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L + E++ + +I YG+ +++ ++++F +M V+RT+KS N L +L
Sbjct: 68 LLDMPKKGLEWDEDM-WVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVIL 126
Query: 134 TCGKLDRMKELF 145
G+ K F
Sbjct: 127 RRGRYMMAKRYF 138
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD--- 139
+ P+ + + +I+ Y R + +E A + F EM N++ TV + TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 140 RMKELFISFNLKAIAV-----LDGLCSNLKIIMNDSQVRV 174
R+ E F +K A+ L GLC+ K+ S+ RV
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKM----SEARV 276
>gi|296087160|emb|CBI33534.3| unnamed protein product [Vitis vinifera]
Length = 506
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 11/123 (8%)
Query: 22 PKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT 81
P A++ F+ ND +P ++L++ LG+ +FD M + +K
Sbjct: 105 PGSAVKFFRWSGHQLNDNHSP---------YSWNLVVDMLGKNFLFDAMWDAVKSMKK-- 153
Query: 82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRM 141
+ + F ++ S Y A + A+ FD M + R + +LN+LL+A+ G+ +
Sbjct: 154 QGLLSLATFASIFSSYVIADRVREAIMTFDVMEQYGCPRDIVALNSLLSAICRDGRTVQA 213
Query: 142 KEL 144
E
Sbjct: 214 AEF 216
>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
Length = 716
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y ++ L +A+ + + L Q+ + V+P+ + N+I Y + A++V
Sbjct: 257 DLVTYSSVVHALCKARAMGKAEAFLRQMVNKG-VLPDNWTYNNLIYGYSSTGQWKEAVRV 315
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA 152
F EM ++ V +LN L+ +L GK+ +++F + +K
Sbjct: 316 FKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKG 358
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
R +++ + II L + + Q I L + P+ +++ ++ Y +E AL
Sbjct: 500 RLDIVFFSSIINNLCKLGRIMDAQNIF-DLTVNVGQHPDAVVYSMLMDGYCLVGKMEKAL 558
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+VFD M S ++ V TL+N G++D LF
Sbjct: 559 RVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLF 596
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
++ Y +++ +M + + D + P+ F +I Y +L+ A+ +
Sbjct: 362 DVFSYKIMLNGYATKGCLVDMTDLFDLMLGDG-IAPDIYTFSVLIKAYANCGMLDKAMII 420
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F+EM V+ V + T++ AL GK+D E F
Sbjct: 421 FNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKF 456
>gi|404357541|gb|AFR63763.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357549|gb|AFR63767.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357553|gb|AFR63769.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357557|gb|AFR63771.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
Length = 187
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 92 NVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+VI+ Y +A L+++A ++FDEMP +R V S + L+N + CGK +LF
Sbjct: 37 SVINAYAKAGLIDYARKLFDEMP----ERNVISWSCLINGYVMCGKYKEALDLF 86
>gi|302814999|ref|XP_002989182.1| hypothetical protein SELMODRAFT_129427 [Selaginella moellendorffii]
gi|300143082|gb|EFJ09776.1| hypothetical protein SELMODRAFT_129427 [Selaginella moellendorffii]
Length = 614
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 47/91 (51%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
NL ++++I L +A E ++ +++ + V P+E F +I + +A + AL +
Sbjct: 253 NLRTFNIMIHGLCKANKVGEADALVRRMEDECGVAPDEFTFNTIIDGHFKAGDSKGALSL 312
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDR 140
F EM R +LNT++ L G++DR
Sbjct: 313 FKEMARLGRCRCSVTLNTVVTGLCKAGEVDR 343
>gi|8778269|gb|AAF79278.1|AC068602_1 F14D16.2 [Arabidopsis thaliana]
Length = 977
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+++ Y ++ LGRAK F + ++L ++ D P + + +I YGRA L A
Sbjct: 477 FKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDG-CQPNTVTYNRLIHSYGRANYLNEA 535
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ VF++M + + TL++ G LD +++
Sbjct: 536 MNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMY 574
Score = 38.9 bits (89), Expect = 0.81, Method: Composition-based stats.
Identities = 22/99 (22%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F + + Y +++ LG +E + + +++ IP+E ++ ++ +G+A +E A
Sbjct: 652 FEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNW-IPDEPVYGLLVDLWGKAGNVEKA 710
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
Q + M ++ V + N+LL+ L K+ EL
Sbjct: 711 WQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELL 749
>gi|404357563|gb|AFR63774.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357565|gb|AFR63775.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357585|gb|AFR63785.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
Length = 187
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 92 NVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+VI+ Y +A L+++A ++FDEMP +R V S + L+N + CGK +LF
Sbjct: 37 SVINAYAKAGLIDYARKLFDEMP----ERNVISWSCLINGYVMCGKYKEALDLF 86
>gi|242092154|ref|XP_002436567.1| hypothetical protein SORBIDRAFT_10g004910 [Sorghum bicolor]
gi|241914790|gb|EER87934.1| hypothetical protein SORBIDRAFT_10g004910 [Sorghum bicolor]
Length = 492
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
+ + ++ Y+++I GRA ++M+ I +K + R+ P + C+V+ YGRA ++
Sbjct: 348 YSWTIVTYNVVIDAFGRAGDLEQMEYIFRLMKSE-RIKPNCVTLCSVVRAYGRAGEVKKI 406
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
V + + ++ + N L++A G L M ++
Sbjct: 407 KTVLRIVENSDITLDIVFFNCLVDAYGRVGCLAEMWDIL 445
>gi|404357961|gb|AFR63973.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357965|gb|AFR63975.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357967|gb|AFR63976.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357979|gb|AFR63982.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357983|gb|AFR63984.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
Length = 187
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 70 MQQILHQLKHDTRVIPEEI-----IFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKS 124
M L RV E + + +V++ Y +A L+++A ++FDEMP +R V S
Sbjct: 10 MYSSCGDLSSALRVFDESVSKDLPAWNSVVNAYAKAGLIDYARKLFDEMP----ERNVIS 65
Query: 125 LNTLLNALLTCGKLDRMKELF 145
+ L+N + CGK +LF
Sbjct: 66 WSCLINGYVMCGKYKEALDLF 86
>gi|255660894|gb|ACU25616.1| pentatricopeptide repeat-containing protein [Glandularia flava]
Length = 481
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
++LH K + ALQ F+ E L F +N + II LGRA + + I
Sbjct: 17 NVLHSSKTSEHALQFFRW-------VERSNL--FEHNRETHLKIIEILGRASKLNHARCI 67
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L + E++ + +I YG+ +++ ++++F +M V+RT+KS N L +L
Sbjct: 68 LLDMPKKGLEWDEDM-WVMMIDSYGKQGIVQESVKMFQKMEELGVERTIKSYNALFKVIL 126
Query: 134 TCGKLDRMKELF 145
G+ K F
Sbjct: 127 RRGRYMMAKRYF 138
Score = 40.4 bits (93), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD--- 139
+ P+ + + +I+ Y R + +E A + F EM N++ TV + TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 140 RMKELFISFNLKAIAV-----LDGLCSNLKIIMNDSQVRV 174
R+ E F +K A+ L GLC+ K+ S+ RV
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKM----SEARV 276
>gi|168055626|ref|XP_001779825.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668737|gb|EDQ55338.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 734
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +I G+AKM++E ++ + + V P + + ++I A L++ + +
Sbjct: 415 DVVFYSTLINVFGKAKMWEEALRVKADML-EAGVTPNVVTWTSIIGACATAGLVDQSFRE 473
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
FDEM + + V N LL A + + DR LF
Sbjct: 474 FDEMLNAGCRPNVNCYNMLLQACIMASQFDRAFLLF 509
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 46/91 (50%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
++ Y++++ + D + Q+K +V + + + +I+ +G+A++ E AL+V
Sbjct: 379 DVTSYNILLKAYAASGRADLAGDLYAQIKKAGKVTLDVVFYSTLINVFGKAKMWEEALRV 438
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDR 140
+M V V + +++ A T G +D+
Sbjct: 439 KADMLEAGVTPNVVTWTSIIGACATAGLVDQ 469
>gi|168004269|ref|XP_001754834.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693938|gb|EDQ80288.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 504
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 59/107 (55%), Gaps = 1/107 (0%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+ + + L+++ +A E ++++ +++ ++ V P+ +F +++S YG + ++
Sbjct: 333 FKPTMKSHMLLLSSYAKAGKVTEAERLVREIE-NSGVKPDTFMFNSLLSAYGNSGRIDEM 391
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153
+ + M S + + +LNTL+NA G +++ +E+F S K +
Sbjct: 392 ESLLESMVSSVAKPDISTLNTLINAYAQGGYIEKAEEVFNSLESKGL 438
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 55/116 (47%), Gaps = 10/116 (8%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+ ++ ++++I G++K + E ++ H +K D + +P E F +++ Y R LE A
Sbjct: 79 FKPDVGCFNMLIDAYGKSKQWREAEKTFHLMK-DFQCLPTETSFNVLLAAYSRGVQLEKA 137
Query: 107 LQVFDEMPSFNVQ---------RTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153
++F EM N + + NT L L G+L + ++ F + I
Sbjct: 138 EKLFHEMKESNYSPGTVEWMIFSGIATYNTYLEVLGKSGRLSQAEDTFRDMQKQGI 193
>gi|15221893|ref|NP_173324.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|42571539|ref|NP_973860.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75151479|sp|Q8GYP6.1|PPR49_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18900
gi|26450017|dbj|BAC42129.1| unknown protein [Arabidopsis thaliana]
gi|28827402|gb|AAO50545.1| unknown protein [Arabidopsis thaliana]
gi|332191657|gb|AEE29778.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332191658|gb|AEE29779.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 860
Score = 44.3 bits (103), Expect = 0.019, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+++ Y ++ LGRAK F + ++L ++ D P + + +I YGRA L A
Sbjct: 360 FKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDG-CQPNTVTYNRLIHSYGRANYLNEA 418
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ VF++M + + TL++ G LD +++
Sbjct: 419 MNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMY 457
Score = 38.9 bits (89), Expect = 0.82, Method: Composition-based stats.
Identities = 22/99 (22%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F + + Y +++ LG +E + + +++ IP+E ++ ++ +G+A +E A
Sbjct: 535 FEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNW-IPDEPVYGLLVDLWGKAGNVEKA 593
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
Q + M ++ V + N+LL+ L K+ EL
Sbjct: 594 WQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELL 632
>gi|404357577|gb|AFR63781.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
Length = 187
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 92 NVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+VI+ Y +A L+++A ++FDEMP +R V S + L+N + CGK +LF
Sbjct: 37 SVINAYAKAGLIDYARKLFDEMP----ERNVISWSCLINGYVMCGKYKEALDLF 86
>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
Length = 913
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 19/137 (13%)
Query: 40 EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR 99
+ P + P N+ Y+++I L + FDE +I H++K + R + + +I
Sbjct: 222 KGPSVYP---NIPSYNVMINGLCKCGKFDESFEIWHRMKKNERG-QDLYTYSTLIHGLCG 277
Query: 100 ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF-----------ISF 148
+ L+ A +V+ EM V V NT+LN L G+++ EL+ +S+
Sbjct: 278 SGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSY 337
Query: 149 NLKAIAVLDGLCSNLKI 165
N+ ++ GL N K+
Sbjct: 338 NI----LIRGLFENAKV 350
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
NL Y+++I R K FD+ +++L+ + P+ + +I+ + + AL++
Sbjct: 123 NLQTYNILIKISCRKKQFDKAKELLNWM-WGQGFSPDVFSYGTLINSLAKNGYMSDALKL 181
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
FDEMP V V N L++ G + E++
Sbjct: 182 FDEMPERGVTPDVACYNILIDGFFKKGDILNASEIW 217
Score = 37.0 bits (84), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 97 YGRARLLEHALQVFDEMPS-FNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA 154
Y + + + AL +F M F Q ++S N+LLNAL+ K D + F+ F ++
Sbjct: 63 YAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLS 121
>gi|255660948|gb|ACU25643.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
Length = 484
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
++LH K + ALQ F+ E L F +N + II LGRA + + I
Sbjct: 17 NVLHGAKKAEHALQFFRW-------VERSNL--FEHNRETHLKIIEILGRASKLNHARCI 67
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L + E++ + +I YG+A +++ ++++F +M V+RT+KS + L +L
Sbjct: 68 LLDMPKKGLEWDEDL-WVLMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVIL 126
Query: 134 TCGKLDRMKELF 145
G+ K F
Sbjct: 127 RRGRYMMAKRYF 138
Score = 37.4 bits (85), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD--- 139
++P+ I + +I+ Y R + +E F EM N++ TV + TL+ ++ ++D
Sbjct: 181 IMPDVITYNTMINGYYRVKKMEEXENYFMEMKGRNIEPTVVTYTTLIKGYVSVDRIDDAL 240
Query: 140 RMKELFISFNLKAIAV-----LDGLCSNLKIIMNDSQ 171
R+ E F + A+ L GLC+ K M+++Q
Sbjct: 241 RLVEEMKGFGINPNAITYSTLLPGLCNAEK--MSEAQ 275
>gi|449018641|dbj|BAM82043.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 805
Score = 44.3 bits (103), Expect = 0.020, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCN-VISFYGRARLLEHA 106
R N Y +I RA + D+ + + QL+ + + ++ CN ++ + RA+++E A
Sbjct: 536 RPNNFCYASLIDACARAGLPDQAESLFRQLRAEG--LEYDLFICNALLGAFARAKMVERA 593
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
Q F+EM S V+ + NTL+ A + D+ + F
Sbjct: 594 FQAFEEMRSAGVRGDRITFNTLITAAARAREFDKAWKAF 632
>gi|356540375|ref|XP_003538665.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Glycine max]
Length = 1476
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
+ F + + Y+ II G+ D+ QI +K R P+ + + +I G+A +E
Sbjct: 420 RGFGQDEMTYNTIIHMYGKQGRHDQAMQIYRDMKSSGRN-PDAVTYTVLIDSLGKASKVE 478
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
A V EM V+ T+ + + L+ A GK + +E F
Sbjct: 479 EAANVMSEMLDAGVKPTLHTYSALICAYAKAGKREEAEETF 519
>gi|357509703|ref|XP_003625140.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355500155|gb|AES81358.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 855
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 11/129 (8%)
Query: 25 ALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVI 84
ALQ+F N FR +++ Y ++ GR++ + ++I +K + +
Sbjct: 381 ALQVFNEIKQNG----------FRPDVVSYTSLLNAYGRSRKPQKAREIFKMIKRNN-LK 429
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
P + + +I YG LLE A+++ EM + V S+ TLL A CG+ ++ +
Sbjct: 430 PNIVSYNALIDAYGSNGLLEDAIEILREMEQDKIHPNVVSICTLLAACGRCGQKVKIDTV 489
Query: 145 FISFNLKAI 153
+ ++ I
Sbjct: 490 LSAAEMRGI 498
>gi|297844848|ref|XP_002890305.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336147|gb|EFH66564.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 860
Score = 44.3 bits (103), Expect = 0.020, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+++ Y ++ LGRAK F + ++L ++ D P + + +I YGRA L A
Sbjct: 360 FKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDG-CQPNTVTYNRLIHSYGRANYLNEA 418
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ VF++M + + TL++ G LD +++
Sbjct: 419 MNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMY 457
Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 22/99 (22%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F + + Y +++ LG +E + + +++ IP+E ++ ++ +G+A +E A
Sbjct: 535 FEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNW-IPDEPVYGLLVDLWGKAGNVEKA 593
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
Q + M + V + N+LL+ L K+ EL
Sbjct: 594 WQWYQAMLHAGLLPNVPTCNSLLSTFLRVNKIAEAYELL 632
>gi|255660880|gb|ACU25609.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
Length = 484
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
++LH K + ALQ F+ E L F +N + II LGRA + + I
Sbjct: 17 NVLHSSKTSEHALQFFRW-------VERSNL--FEHNRETHLKIIEILGRASKLNHARCI 67
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L + E++ + +I YG+ +++ ++++F +M V+RT+KS N L +L
Sbjct: 68 LLDMPKKGLEWDEDM-WVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNXLFKVIL 126
Query: 134 TCGKLDRMKELF 145
G+ K F
Sbjct: 127 RRGRYMMAKRYF 138
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD--- 139
+ P+ + + +I+ Y R + +E A + F EM N++ TV + TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 140 RMKELFISFNLKAIAV-----LDGLCSNLKIIMNDSQVRV 174
R+ E F +K A+ L GLC+ K+ S+ RV
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKM----SEARV 276
>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
Length = 702
Score = 44.3 bits (103), Expect = 0.020, Method: Composition-based stats.
Identities = 33/129 (25%), Positives = 63/129 (48%), Gaps = 9/129 (6%)
Query: 45 KP-FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLL 103
KP F++N +++ +AK +E ++L + + + P EI++ VI+ + +A +
Sbjct: 69 KPGFQHNAYTCAVLLNAFVKAKRHEEAHRLLKE-ELEPLCFPNEIMYTTVINGFCKAGQV 127
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN-------LKAIAVL 156
+ A ++ DEM V+ V +TL+ L G++D E F S + V+
Sbjct: 128 DQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEECSPNVITYNTVV 187
Query: 157 DGLCSNLKI 165
+GLC +I
Sbjct: 188 NGLCKANRI 196
>gi|71745766|ref|XP_827513.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70831678|gb|EAN77183.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 1022
Score = 44.3 bits (103), Expect = 0.020, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+ N + ++++ GRAK ++ +++++ + K ++ EE + +++ Y RA ++E
Sbjct: 788 FQENHITFNILFEGYGRAKRYERVKELVEERK-SKQIAMEEFGYAVLLNIYSRAHMVEET 846
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNL 150
Q+ +EM S V T + L TL + G + ++ E ++S L
Sbjct: 847 TQIVEEMVSAGVPFTSRMLATLATSFSYIGDIPKV-EHYVSLLL 889
>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 665
Score = 44.3 bits (103), Expect = 0.020, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+ + Y ++ L RA +++ +++L+++ P E+ F I + L++ A+ +
Sbjct: 346 DTISYTTVLKGLCRAGRWEDAKELLNEMVRKN-CPPNEVTFNTFICILCQKGLIDQAILL 404
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF-----NLKAIAVLDGLC 160
++MP + + + N L+N G++D ELF S + +L GLC
Sbjct: 405 IEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFNSLPCEPNTITYTTLLTGLC 460
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+ + + Y ++ L AK +++++ + ++ + +P E+ F ++ F+ R ++E A
Sbjct: 238 FQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENN-CVPNEVTFDMLVRFFCRGGMVERA 296
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF--------NLKAIAVLDG 158
++V D M N ++N++ G++D E + + VL G
Sbjct: 297 IEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKG 356
Query: 159 LC 160
LC
Sbjct: 357 LC 358
>gi|334182677|ref|NP_001185030.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332191659|gb|AEE29780.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 886
Score = 44.3 bits (103), Expect = 0.020, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+++ Y ++ LGRAK F + ++L ++ D P + + +I YGRA L A
Sbjct: 360 FKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDG-CQPNTVTYNRLIHSYGRANYLNEA 418
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ VF++M + + TL++ G LD +++
Sbjct: 419 MNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMY 457
Score = 38.9 bits (89), Expect = 0.88, Method: Composition-based stats.
Identities = 22/99 (22%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F + + Y +++ LG +E + + +++ IP+E ++ ++ +G+A +E A
Sbjct: 535 FEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNW-IPDEPVYGLLVDLWGKAGNVEKA 593
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
Q + M ++ V + N+LL+ L K+ EL
Sbjct: 594 WQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELL 632
>gi|222636666|gb|EEE66798.1| hypothetical protein OsJ_23544 [Oryza sativa Japonica Group]
Length = 665
Score = 44.3 bits (103), Expect = 0.020, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
R +++ Y ++ GR+ ++ +++ +++K ++ P ++ + +I YG A +L+ A
Sbjct: 254 LRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNS-CKPNKVSYNALIDAYGSAGMLKEA 312
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ + EM +Q V S++TLL A C ++ R++ +
Sbjct: 313 VGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETIL 351
>gi|218199303|gb|EEC81730.1| hypothetical protein OsI_25362 [Oryza sativa Indica Group]
Length = 583
Score = 44.3 bits (103), Expect = 0.020, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
R +++ Y ++ GR+ ++ +++ +++K ++ P ++ + +I YG A +L+ A
Sbjct: 254 LRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNS-CKPNKVSYNALIDAYGSAGMLKEA 312
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ + EM +Q V S++TLL A C ++ R++ +
Sbjct: 313 VGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETIL 351
>gi|297606902|ref|NP_001059180.2| Os07g0213300 [Oryza sativa Japonica Group]
gi|215767816|dbj|BAH00045.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255677604|dbj|BAF21094.2| Os07g0213300 [Oryza sativa Japonica Group]
Length = 677
Score = 44.3 bits (103), Expect = 0.020, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
R +++ Y ++ GR+ ++ +++ +++K ++ P ++ + +I YG A +L+ A
Sbjct: 254 LRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNS-CKPNKVSYNALIDAYGSAGMLKEA 312
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ + EM +Q V S++TLL A C ++ R++ +
Sbjct: 313 VGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETIL 351
>gi|356503440|ref|XP_003520516.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41720-like [Glycine max]
Length = 832
Score = 44.3 bits (103), Expect = 0.020, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
FR +++ Y ++ GR++ + +QI ++K + ++ P + + +I YG LL A
Sbjct: 394 FRPDIVSYTSLLNAYGRSQKPHKARQIFDRMKRN-KLKPNLVSYNALIDAYGSNGLLADA 452
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAV 155
+++ EM +Q V S+ TLL A C + ++ + + ++ I +
Sbjct: 453 IKILREMEQEGIQPNVVSICTLLAACGRCSRKVKIDTVLTAAEMRGIKL 501
Score = 37.0 bits (84), Expect = 2.9, Method: Composition-based stats.
Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 11/127 (8%)
Query: 41 APPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRA 100
A LKP N++ Y+ +I M +E +++K + P+ + + ++++ YGR+
Sbjct: 356 AEGLKP---NIVSYNALIGAYAARGMDNEAHLFFNEIKQNG-FRPDIVSYTSLLNAYGRS 411
Query: 101 RLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGK-------LDRMKELFISFNLKAI 153
+ A Q+FD M ++ + S N L++A + G L M++ I N+ +I
Sbjct: 412 QKPHKARQIFDRMKRNKLKPNLVSYNALIDAYGSNGLLADAIKILREMEQEGIQPNVVSI 471
Query: 154 AVLDGLC 160
L C
Sbjct: 472 CTLLAAC 478
>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 719
Score = 44.3 bits (103), Expect = 0.020, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N+ ++++ L + +++ L +++ + V P+ + + +IS Y L+E A ++
Sbjct: 224 NVYTLNIMVNALCKDGKMEKVGTFLSEVQ-EKGVYPDIVTYNTLISAYSSQGLMEEAFEL 282
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
MPS V + NT++N L GK +R KE+F
Sbjct: 283 MHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVF 318
Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 9/120 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ I+ L + KM E ++ +++ + + P+ +I + + L++A+++
Sbjct: 434 DVVTYNTILHGLCKRKMLGEADKLFNEMT-ERGLFPDSYTLTILIDGHCKLGNLQNAMEL 492
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLCS 161
F +M ++ V + NTLL+ G +D KE++ K I +++ LCS
Sbjct: 493 FKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCS 552
>gi|356557957|ref|XP_003547276.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At5g43820-like [Glycine max]
Length = 505
Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 22/123 (17%)
Query: 28 LFKNPNPNAN---DTEAPPLKPFRYNLLH------------------YDLIITKLGRAKM 66
+F NP+PNA D PP R L Y +I+ LGR K
Sbjct: 66 VFPNPHPNAANAVDAFLPPEDKLRGVFLQKLKGRAAIESALSNVAVXYHVIVKALGRRKF 125
Query: 67 FDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLN 126
FD M L ++ + + + + V+ + RA + A+QVF + V+R ++LN
Sbjct: 126 FDFMMDALCDMRRNA-IDGDLFMLSVVVDSFVRAGHVSRAIQVFGNLDDLGVRRDTEALN 184
Query: 127 TLL 129
LL
Sbjct: 185 VLL 187
>gi|357432720|gb|AET79037.1| At3g62890-like protein [Arabidopsis halleri]
Length = 151
Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 92 NVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+VI+ Y +A L+++A ++FDEMP +R V S + L+N + CGK +LF
Sbjct: 18 SVINAYAKAGLIDYARKLFDEMP----ERNVISWSCLINGYVMCGKYKEALDLF 67
>gi|357432708|gb|AET79031.1| At3g62890-like protein [Arabidopsis halleri]
gi|357432710|gb|AET79032.1| At3g62890-like protein [Arabidopsis halleri]
gi|357432712|gb|AET79033.1| At3g62890-like protein [Arabidopsis halleri]
gi|357432714|gb|AET79034.1| At3g62890-like protein [Arabidopsis halleri]
Length = 151
Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 92 NVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+VI+ Y +A L+++A ++FDEMP +R V S + L+N + CGK +LF
Sbjct: 18 SVINAYAKAGLIDYARKLFDEMP----ERNVISWSCLINGYVMCGKYKEALDLF 67
>gi|242065966|ref|XP_002454272.1| hypothetical protein SORBIDRAFT_04g027800 [Sorghum bicolor]
gi|241934103|gb|EES07248.1| hypothetical protein SORBIDRAFT_04g027800 [Sorghum bicolor]
Length = 519
Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
K R +++ ++++I GR ++FD+M+Q+ L ++ P F ++I+ YG+ARL E
Sbjct: 262 KQCRPDVITFNILIDSYGRKQIFDKMEQVFKSLLR-SKERPTHPTFNSMITNYGKARLRE 320
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
A V +M + + L+ C + + +++F
Sbjct: 321 KAEYVVKKMEELGYKPNYVTQECLIMMYAHCDCVSKARQVF 361
>gi|297828902|ref|XP_002882333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328173|gb|EFH58592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 506
Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 41 APPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRA 100
A K +++ YD+ + LG+AK +D ++ + +++ D V I ++ + A
Sbjct: 109 AESCKGHKHSNDAYDMAVDILGKAKKWDRLKVFVERMRGDKLVTLNTIA--KIMRRFAGA 166
Query: 101 RLLEHALQVFDEMPSFNVQRTVKSLNTLLNAL 132
E A+ +FD++ F +++ +S+N LL+ L
Sbjct: 167 GEWEEAVGIFDKLGEFGLEKNTESMNLLLDTL 198
>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 44.3 bits (103), Expect = 0.021, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 14/102 (13%)
Query: 46 PFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE--EIIFCNVISFYGRARLL 103
P R ++ + +++ + M DE +I ++ PE E+ + +I+ Y +++ +
Sbjct: 273 PIR-DVFAWTAMVSGFVQNGMLDEATRIFEEM-------PEKNEVSWNAMIAGYVQSQQI 324
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
E A ++FD+MPS R S NT++ CG +D+ K LF
Sbjct: 325 EKARELFDQMPS----RNTSSWNTMVTGYAQCGNIDQAKILF 362
>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g01110-like [Cucumis sativus]
Length = 749
Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 9/121 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ + L + KMF + + +++ + ++P+ F +I Y + ++ AL +
Sbjct: 466 DVVTYNTFLNGLCKKKMFADADMLFNEMV-ERGMVPDFYTFTTLIRGYCKDGNMDKALNL 524
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLCS 161
F+ M N++ + NTL++ G++ R KEL+ K I VL+G CS
Sbjct: 525 FEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCS 584
Query: 162 N 162
+
Sbjct: 585 S 585
>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 44.3 bits (103), Expect = 0.021, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 14/102 (13%)
Query: 46 PFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE--EIIFCNVISFYGRARLL 103
P R ++ + +++ + M DE +I ++ PE E+ + +I+ Y +++ +
Sbjct: 273 PIR-DVFAWTAMVSGFVQNGMLDEATRIFEEM-------PEKNEVSWNAMIAGYVQSQQI 324
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
E A ++FD+MPS R S NT++ CG +D+ K LF
Sbjct: 325 EKARELFDQMPS----RNTSSWNTMVTGYAQCGNIDQAKILF 362
>gi|302784698|ref|XP_002974121.1| hypothetical protein SELMODRAFT_100681 [Selaginella moellendorffii]
gi|300158453|gb|EFJ25076.1| hypothetical protein SELMODRAFT_100681 [Selaginella moellendorffii]
Length = 236
Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 88 IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
I + VI+ Y RA ++ A+Q+FD+MP QR V + N L+ A G L++ +E F
Sbjct: 7 ISWSTVITLYTRAGGIDVAVQMFDKMP----QRNVIAWNVLIAAFAEVGDLEKCQEFF 60
>gi|255660888|gb|ACU25613.1| pentatricopeptide repeat-containing protein [Verbena rigida]
Length = 481
Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
++LH K + ALQ F+ E L F +N + II LGRA + + I
Sbjct: 17 NVLHSSKTSEHALQFFRW-------VERSNL--FEHNRETHLKIIEILGRASKLNHARCI 67
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L + E++ + +I YG+ +++ ++++F +M V+RT+KS N L +L
Sbjct: 68 LLDMPKKGLEWDEDM-WVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNXLFKVIL 126
Query: 134 TCGKLDRMKELF 145
G+ K F
Sbjct: 127 RRGRYMMAKRYF 138
Score = 40.4 bits (93), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD--- 139
+ P+ + + +I+ Y R + +E A + F EM N++ TV + TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 140 RMKELFISFNLKAIAV-----LDGLCSNLKIIMNDSQVRV 174
R+ E F +K A+ L GLC+ K+ S+ RV
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKM----SEARV 276
>gi|357432692|gb|AET79023.1| At3g62890-like protein [Arabidopsis halleri]
gi|357432694|gb|AET79024.1| At3g62890-like protein [Arabidopsis halleri]
gi|357432698|gb|AET79026.1| At3g62890-like protein [Arabidopsis halleri]
gi|357432700|gb|AET79027.1| At3g62890-like protein [Arabidopsis halleri]
gi|357432704|gb|AET79029.1| At3g62890-like protein [Arabidopsis halleri]
Length = 151
Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 92 NVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+VI+ Y +A L+++A ++FDEMP +R V S + L+N + CGK +LF
Sbjct: 18 SVINAYAKAGLIDYARKLFDEMP----ERNVISWSCLINGYVMCGKYKEALDLF 67
>gi|255565671|ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536913|gb|EEF38551.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 528
Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+ ++I+ L R + E Q LK + P+ I++ N++ + RA + A +VF EM
Sbjct: 215 FSILISILCRKRRATEAQSFFDSLK--DKFEPDVIVYTNLVRGWCRAGNIPEAERVFTEM 272
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
V + +++AL CG++ R ++F
Sbjct: 273 KVAGCMPNVYTYTIVIDALCRCGQITRAHDVF 304
>gi|357432742|gb|AET79048.1| At3g62890-like protein [Arabidopsis halleri]
Length = 151
Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 92 NVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+VI+ Y +A L+++A ++FDEMP +R V S + L+N + CGK +LF
Sbjct: 18 SVINAYAKAGLIDYARKLFDEMP----ERNVISWSCLINGYVMCGKYKEALDLF 67
>gi|255564122|ref|XP_002523058.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537620|gb|EEF39243.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 286
Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 85/179 (47%), Gaps = 18/179 (10%)
Query: 4 AKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGR 63
+K +P ++ ++ +K + A +F + A F+++ + II+KL
Sbjct: 10 SKKITPSQVEQVIRAEKDIEKAKLVFDSAT-------AEYSHGFKHDNSTFSAIISKLLS 62
Query: 64 AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVK 123
A F ++ +L+++K + I E+I F ++ YGR +++VF +M F + T K
Sbjct: 63 ANQFTLVEDMLNRMKQEKCNITEDI-FLSICRAYGRVHRPLDSIRVFHKMKDFECKATQK 121
Query: 124 SLNTLLNALLTCGKL-------DRMKELFISFNLKAIAVL-DGLCSNLKIIMNDSQVRV 174
S T+ L+ +L M+E+ IS ++ ++ VL LC N I D+ R+
Sbjct: 122 SYITVFAILVEENRLKDAMRFYQHMREMGISASVVSLNVLIKALCKNSSTI--DAAFRI 178
>gi|357144169|ref|XP_003573197.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g43820-like [Brachypodium distachyon]
Length = 531
Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I R D+++ + D + P+E+ C++I GRA E L+VF++M
Sbjct: 243 YNDVIGGWARFGRVDKLEHFWAMMLEDG-LAPDEVSHCHLIEALGRAGQPEEGLKVFEKM 301
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDR 140
T + N L+ ++ G LDR
Sbjct: 302 VHEGYGPTTTAYNALIFNFISSGDLDR 328
>gi|356532886|ref|XP_003535000.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic-like [Glycine max]
Length = 485
Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 46/95 (48%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N +LI++ G+A FD+M++I+ + T P+ VIS +G ++ +
Sbjct: 232 NTYTQNLILSGYGKAGRFDQMEKIVSSMMEGTTCKPDVWTMNTVISVFGDKGQIDIMEKW 291
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
+D+ SF +Q + N L+ A + D+M +
Sbjct: 292 YDKFCSFGIQPQRSTFNILIAAYGSKRMYDKMSSV 326
>gi|255660906|gb|ACU25622.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
Length = 484
Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
++LH K + ALQ F+ E L F +N + II LGRA + + I
Sbjct: 17 NVLHSAKTSEHALQFFRW-------VERSNL--FEHNRETHLKIIEILGRASKLNHARCI 67
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L + E++ + +I YG+ +++ ++++F +M V+RT+KS N L +L
Sbjct: 68 LLDIPKKGLEWDEDM-WVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVIL 126
Query: 134 TCGKLDRMKELF 145
G+ K F
Sbjct: 127 RRGRYMMAKRYF 138
Score = 40.4 bits (93), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD--- 139
+ P+ + + +I+ Y R + +E A + F EM N++ TV + TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTIINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 140 RMKELFISFNLKAIAV-----LDGLCSNLKI 165
R+ E F +K A+ L GLC+ K+
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKM 271
>gi|261331712|emb|CBH14706.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 1022
Score = 44.3 bits (103), Expect = 0.022, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+ N + ++++ GRAK ++ +++++ + K ++ EE + +++ Y RA ++E
Sbjct: 788 FQENHITFNILFEGYGRAKRYERVKELVEERK-SKQIAMEEFGYAVLLNIYSRAHMVEET 846
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNL 150
Q+ +EM S V T + L TL + G + ++ E ++S L
Sbjct: 847 TQIVEEMVSAGVPFTSRMLATLATSFSYIGDIPKV-EHYVSLLL 889
>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g16640, mitochondrial; Flags: Precursor
gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 60/128 (46%), Gaps = 17/128 (13%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y L+I L DE +++ + P+ + + +I+ Y +++ +EH +++
Sbjct: 290 DIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKG-CFPDVVTYSILINGYCKSKKVEHGMKL 348
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF------------ISFNLKAIAVLD 157
F EM V R + L+ GKL+ +E+F I++N+ +L
Sbjct: 349 FCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNV----LLH 404
Query: 158 GLCSNLKI 165
GLC N KI
Sbjct: 405 GLCDNGKI 412
>gi|15226879|ref|NP_181048.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099187|sp|O64766.1|PP185_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g35030, mitochondrial; Flags: Precursor
gi|3033399|gb|AAC12843.1| hypothetical protein [Arabidopsis thaliana]
gi|209414526|gb|ACI46503.1| At2g35030 [Arabidopsis thaliana]
gi|330253957|gb|AEC09051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 627
Score = 43.9 bits (102), Expect = 0.022, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 63/124 (50%), Gaps = 17/124 (13%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE--IIFCNVISFYGRARLLEH 105
R N++ + +++ R+K + + ++ PE + + +I Y ++ ++
Sbjct: 106 RKNVVTWTAMVSGYLRSKQLSIAEMLFQEM-------PERNVVSWNTMIDGYAQSGRIDK 158
Query: 106 ALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI----AVLDGLCS 161
AL++FDEMP +R + S N+++ AL+ G++D LF + + A++DGL
Sbjct: 159 ALELFDEMP----ERNIVSWNSMVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAK 214
Query: 162 NLKI 165
N K+
Sbjct: 215 NGKV 218
>gi|356508608|ref|XP_003523047.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18900-like [Glycine max]
Length = 879
Score = 43.9 bits (102), Expect = 0.022, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++ LGRA+ F + ++L Q+ D P + + +I YGRA L AL VF++M
Sbjct: 386 YTTMVGILGRAREFGAINKLLEQMVKDG-CQPNVVTYNRLIHSYGRANYLREALNVFNQM 444
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLD-------RMKELFIS 147
+ + TL++ G LD RM+E+ +S
Sbjct: 445 QEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLS 485
Score = 37.0 bits (84), Expect = 3.2, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 59/118 (50%), Gaps = 7/118 (5%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+ + + Y +++ LG +E + + +++ + +P+E ++ ++ +G+A +E A
Sbjct: 554 FKPDKVTYSIVMEVLGHCGYLEEAEAVFFEMRQN-HWVPDEPVYGLLVDLWGKAGNVEKA 612
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLK 164
+ + M + V + N+LL+A L R+ L ++NL V GL +L+
Sbjct: 613 WEWYHTMLRAGLLPNVPTCNSLLSAFL------RVHRLPDAYNLLQNMVTLGLNPSLQ 664
>gi|242086476|ref|XP_002443663.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
gi|241944356|gb|EES17501.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
Length = 853
Score = 43.9 bits (102), Expect = 0.022, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
FR + + Y +++ LG DE + + +++ D P+E ++ ++ +G+A ++ A
Sbjct: 531 FRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRRDW--APDEPVYGLLVDLWGKAGNVDKA 588
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFI 146
L + M +Q V + N+LL+A L K++R ++ +I
Sbjct: 589 LGWYQAMLQDGLQPNVPTCNSLLSAFL---KMNRFQDAYI 625
Score = 43.5 bits (101), Expect = 0.030, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+++ Y +I LG+A+ F ++++L ++ P + + +I YGRA L+ A
Sbjct: 356 FKHDGHTYTTMIGILGQARQFGVLKKLLDEMSR-AHCKPTVVTYNRIIHAYGRANYLKEA 414
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD-------RMKELFIS 147
++VF+EM + + TL++ G LD RM+E+ +S
Sbjct: 415 VKVFEEMQEAGYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLS 462
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 15/99 (15%)
Query: 54 YDLIITKLGRA-------KMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
Y+ II GRA K+F+EMQ+ ++ P+ + +C +I + +A L+ A
Sbjct: 398 YNRIIHAYGRANYLKEAVKVFEEMQEAGYE--------PDRVTYCTLIDIHAKAGYLDIA 449
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ ++ M + + + ++N L G+L +LF
Sbjct: 450 MDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLF 488
>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Cucumis sativus]
Length = 749
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 9/121 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ + L + KMF + + +++ + ++P+ F +I Y + ++ AL +
Sbjct: 466 DVVTYNTFLNGLCKKKMFADADMLFNEMV-ERGMVPDFYTFTTLIRGYCKDGNMDKALNL 524
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLCS 161
F+ M N++ + NTL++ G++ R KEL+ K I VL+G CS
Sbjct: 525 FEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCS 584
Query: 162 N 162
+
Sbjct: 585 S 585
>gi|414869157|tpg|DAA47714.1| TPA: hypothetical protein ZEAMMB73_516901 [Zea mays]
Length = 853
Score = 43.9 bits (102), Expect = 0.022, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
FR + + Y +++ LG DE + + +++ D P+E ++ ++ +G+A ++ A
Sbjct: 531 FRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRRDW--APDEPVYGLLVDLWGKAGNVDKA 588
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFI 146
L + M +Q V + N+LL+A L K++R ++ +I
Sbjct: 589 LGWYQAMLQDGLQPNVPTCNSLLSAFL---KMNRFQDAYI 625
Score = 43.9 bits (102), Expect = 0.026, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+++ Y +I LG+A+ F ++++L ++ P + + +I YGRA L+ A
Sbjct: 356 FKHDGHTYTTMIGILGQARQFGVLKELLDEMSR-AHCKPTVVTYNRIIHAYGRANYLKEA 414
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD-------RMKELFIS 147
++VF+EM + + TL++ G LD RM+E+ +S
Sbjct: 415 VKVFEEMQEAGYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLS 462
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 15/99 (15%)
Query: 54 YDLIITKLGRA-------KMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
Y+ II GRA K+F+EMQ+ ++ P+ + +C +I + +A L+ A
Sbjct: 398 YNRIIHAYGRANYLKEAVKVFEEMQEAGYE--------PDRVTYCTLIDIHAKAGYLDIA 449
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ ++ M + + + ++N L G+L +LF
Sbjct: 450 MDLYGRMQEVGLSPDTFTYSVMVNCLGKGGQLAAAYKLF 488
>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Vitis vinifera]
Length = 740
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 11/128 (8%)
Query: 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMF 67
+P++L LL L +++LF+ A K + + Y ++I KLG A F
Sbjct: 95 TPYQLCKLLELPLDVPTSMELFQ---------WAGTQKGYCHMFDVYYMLIDKLGAAGEF 145
Query: 68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPS-FNVQRTVKSLN 126
+L Q+K + ++ E +F ++ YGRA L A ++ +M ++ + T +S N
Sbjct: 146 KTTDALLMQMKQEG-IVFRESLFILIMKHYGRAGLPGQATRLLLDMRGVYSCEPTFRSYN 204
Query: 127 TLLNALLT 134
+L+ LL
Sbjct: 205 VVLDVLLA 212
>gi|297791025|ref|XP_002863397.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297309232|gb|EFH39656.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 711
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 66/151 (43%), Gaps = 16/151 (10%)
Query: 20 KHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKH 79
+ K ALQL+ E K + + + Y+ ++ + +E +++ + +K
Sbjct: 375 RWAKDALQLW----------EEMKAKKWPMDFILYNTLLNMCADIGLEEEAERLFNDMKE 424
Query: 80 DTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD 139
+ P+ + +++ YG E A+++F+EM VQ V L+ L GK
Sbjct: 425 SVQCKPDNFSYTAMLNIYGSGGKAEKAMKLFEEMLEAGVQVNVMGCTCLVQCL---GKAK 481
Query: 140 RMKELFISFNL---KAIAVLDGLCSNLKIIM 167
R+ +L F+L + + D LC L +M
Sbjct: 482 RIDDLVYVFDLSIQRGVKPDDRLCGCLLSVM 512
Score = 38.9 bits (89), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 15/103 (14%)
Query: 50 NLLHYDLIITKLGRA-------KMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARL 102
N++ Y+ ++ +GRA +F+EM + + P E ++ YG+AR
Sbjct: 325 NVVVYNTLLEAMGRAGKPGLARSLFNEM--------LEAGLTPNEKTLTALVKIYGKARW 376
Query: 103 LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ ALQ+++EM + NTLLN G + + LF
Sbjct: 377 AKDALQLWEEMKAKKWPMDFILYNTLLNMCADIGLEEEAERLF 419
>gi|242084014|ref|XP_002442432.1| hypothetical protein SORBIDRAFT_08g020000 [Sorghum bicolor]
gi|241943125|gb|EES16270.1| hypothetical protein SORBIDRAFT_08g020000 [Sorghum bicolor]
Length = 535
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ ++ R D++Q++ +++ D ++P E+ C++I GRA E AL+ F+ M
Sbjct: 247 YNDVMGGWARFGSVDKLQEVWTKMQEDG-LVPNEVSHCHLIEGLGRAGQTEDALREFENM 305
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLD 139
T + N L+ ++ G LD
Sbjct: 306 VHERYGPTTMAYNALIFNFISVGDLD 331
>gi|225453152|ref|XP_002272930.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Vitis vinifera]
Length = 502
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 11/124 (8%)
Query: 22 PKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT 81
P A++ F+ ND +P ++L++ LG+ +FD M + +K
Sbjct: 101 PGSAVKFFRWSGHQLNDNHSP---------YSWNLVVDMLGKNFLFDAMWDAVKSMK--K 149
Query: 82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRM 141
+ + F ++ S Y A + A+ FD M + R + +LN+LL+A+ G+ +
Sbjct: 150 QGLLSLATFASIFSSYVIADRVREAIMTFDVMEQYGCPRDIVALNSLLSAICRDGRTVQA 209
Query: 142 KELF 145
E
Sbjct: 210 AEFL 213
>gi|297797974|ref|XP_002866871.1| EMB2453 [Arabidopsis lyrata subsp. lyrata]
gi|297312707|gb|EFH43130.1| EMB2453 [Arabidopsis lyrata subsp. lyrata]
Length = 561
Score = 43.9 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ ++++I G+ + F++M+Q L ++ P F ++I YG+AR+++ A V
Sbjct: 277 DIITFNVLIDSYGKKQEFEKMEQTFKSLMR-SKEKPTLPTFNSMIINYGKARMIDKAEWV 335
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F +M N + + ++ CG + R +E+F
Sbjct: 336 FKKMNDMNYMPSFITYECMIMMYGYCGSVSRAREIF 371
>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
Length = 1115
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 4/117 (3%)
Query: 38 DTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFY 97
+ E+ L+P N+ Y + I LGR DE +I+ ++ D P+ + + +I
Sbjct: 254 EMESMGLRP---NIYTYTICIRVLGRDGKIDEAYRIMKRMDDDG-CGPDVVTYTVLIDAL 309
Query: 98 GRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA 154
AR L+ A+ +F +M S + + + TLL+ CG LD++++++ A
Sbjct: 310 CTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYA 366
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 65/137 (47%), Gaps = 12/137 (8%)
Query: 37 NDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISF 96
N+ ++ L P + + Y++++ + DE ++L ++ + P+ I+ ++I
Sbjct: 498 NELKSSGLAP---DSVTYNMMMKCYSKVGQVDEAIKLLSEMSK-VQCEPDVIVINSLIDT 553
Query: 97 YGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA-- 154
+A +E A Q+F M N+ TV + N LL L G++ + +LF S N +
Sbjct: 554 LYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPN 613
Query: 155 ------VLDGLCSNLKI 165
+LD LC N ++
Sbjct: 614 TITFNTLLDCLCKNDEV 630
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y+L+I LGR++ +E + H+++ + ++P+ + ++I G ++E A ++
Sbjct: 999 DLVAYNLMINGLGRSQRTEEALSLFHEMQ-NRGIVPDLYTYNSLILNLGIVGMIEEAGKI 1057
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCG 136
++E+ ++ V + N L+ G
Sbjct: 1058 YEELQFIGLKPNVFTYNALIRGYTLSG 1084
>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 529
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 9/121 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+++I L + K DE +L ++ H ++P+ + + ++I ++ + AL +
Sbjct: 289 NVYSYNIMINGLCKCKRVDEAMNLLREMLHK-NMVPDTVTYNSLIDGLCKSGRITSALNL 347
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLCS 161
+EM V + +LL+AL LD+ LF+ + I A++DGLC
Sbjct: 348 MNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCK 407
Query: 162 N 162
Sbjct: 408 G 408
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 11/125 (8%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR-VIPEEIIFCNVISFYGRARLL 103
+ R N++ Y+ II L + K+ +E + ++ D R + P+ I + +I + L
Sbjct: 144 RSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEM--DARGIFPDAITYTTLIYGFCLLGQL 201
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AV 155
A + DEM N+ V N L+NAL G + K L + I +
Sbjct: 202 MGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTL 261
Query: 156 LDGLC 160
+DG C
Sbjct: 262 MDGYC 266
>gi|255554390|ref|XP_002518234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542581|gb|EEF44120.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 932
Score = 43.9 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 24/114 (21%), Positives = 57/114 (50%), Gaps = 2/114 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ +++I+ L F+++ +L+ + ++ I +C +I + + ++ AL++
Sbjct: 459 DIIMFNIILKALFVVGAFEDVL-VLYNGMQEMNLVANSITYCTIIGGFCKVGRIDEALEI 517
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNL 163
FDE + +V N ++N L G +D E+F+ K + + G+C L
Sbjct: 518 FDEF-RHGLGSSVACYNCMINGLCKNGMVDMAAEIFVELIEKGLTLDIGICMTL 570
>gi|413951210|gb|AFW83859.1| hypothetical protein ZEAMMB73_953172 [Zea mays]
Length = 598
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
Query: 55 DLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMP 114
D + L R MFDE +I+ +K P+ + + ++ +A LE A +V DEM
Sbjct: 337 DGVHRALTRNGMFDEAAEIVQTMKAQGHQ-PDNVTYSQLVYGLCKADKLEDARKVLDEME 395
Query: 115 SFNVQRTVKSLNTLLNALLTCGKLDRMKELF---ISFNLKAIA-----VLDGLCSNLKI 165
+ +K+ L++ G +DR + I L A A +L GLCS+ K+
Sbjct: 396 AEGCVPDLKTWTLLIHGCCLAGDVDRAVQYLTEMIEKGLDADANLLDVILKGLCSHEKV 454
>gi|224054128|ref|XP_002298105.1| predicted protein [Populus trichocarpa]
gi|222845363|gb|EEE82910.1| predicted protein [Populus trichocarpa]
Length = 401
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE---EIIFCNVISFYGRARLLEHA 106
N ++ +++L A FD ++ H L+H + +P+ E +I YG+A ++EHA
Sbjct: 71 NRFAFEDTVSRLAGANRFDYIE---HLLEHQ-KTLPQGRREGYMVRIIMLYGKAGMIEHA 126
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNAL 132
+ F M +RTVKS N L L
Sbjct: 127 IDTFHNMHLRGCKRTVKSFNAALKVL 152
>gi|413936859|gb|AFW71410.1| hypothetical protein ZEAMMB73_528560 [Zea mays]
Length = 671
Score = 43.9 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 59/124 (47%), Gaps = 14/124 (11%)
Query: 46 PFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEH 105
P R ++ Y+ + L A +D+ +++ + + +P E+ F +IS + L+
Sbjct: 517 PCRADIFSYNATLKGLCMAARWDDAGELIADMVTED-CLPNEVTFNILISSLCQKGLVNR 575
Query: 106 ALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF---------ISFNLKAIAVL 156
A+ V+++MP + + + + N L+N G+LD + IS+N ++L
Sbjct: 576 AIDVYEQMPKYGITPDIFTYNALINGYSEQGRLDDALKFLSTMPCEPDTISYN----SIL 631
Query: 157 DGLC 160
GLC
Sbjct: 632 KGLC 635
Score = 42.0 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 61/127 (48%), Gaps = 17/127 (13%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARL 102
P+ P Y Y+ ++ L AK +++ ++++ ++ ++ P E+ F I + + L
Sbjct: 211 PVAPDTYT---YNTVLKGLCCAKQWEQAEELMREMIRNS-CHPNEVTFATQIRAFCQNGL 266
Query: 103 LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF---------ISFNLKAI 153
L+ A+++ ++MP + V +TL+N G++D +L + +N
Sbjct: 267 LDRAVELLEQMPKYGCTPDVIIYSTLVNGFSEHGRVDEALKLLNTMLCRPNTVCYN---- 322
Query: 154 AVLDGLC 160
A L GLC
Sbjct: 323 AALKGLC 329
>gi|255660902|gb|ACU25620.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
Length = 484
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
++LH K + ALQ F+ E L F +N + II LGRA + + I
Sbjct: 17 NVLHSAKTSEHALQFFRW-------VERSNL--FEHNRETHLKIIEILGRASKLNHARCI 67
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L + E++ + +I YG+ +++ ++++F +M V+RT+KS N L +L
Sbjct: 68 LLDMPKKGLEWDEDM-WVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFXVIL 126
Query: 134 TCGKLDRMKELF 145
G+ K F
Sbjct: 127 RRGRYMMAKRYF 138
Score = 39.7 bits (91), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD--- 139
+ P+ + + +I+ Y R + +E A + F EM N++ TV + TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 140 RMKELFISFNLKAIAV-----LDGLCSNLKI 165
R+ E F +K A+ L GLC+ K+
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKM 271
>gi|255582522|ref|XP_002532046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528289|gb|EEF30336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 478
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ ++L+I G+ + FD+M+Q+ L H ++ P F ++I+ YG+AR E+A V
Sbjct: 276 DIITFNLLIDSYGKKQDFDKMEQVFKSLLH-SKERPTLPTFNSMITNYGKARQKENAESV 334
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+M + +L+ C + + +E+F
Sbjct: 335 LQKMTKMKYTPNFITYESLIMMYGFCDSVSKAREIF 370
>gi|125559009|gb|EAZ04545.1| hypothetical protein OsI_26694 [Oryza sativa Indica Group]
Length = 784
Score = 43.9 bits (102), Expect = 0.024, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 57/110 (51%), Gaps = 4/110 (3%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLL 103
+ P RY Y+ +I+ R ++ E Q+ ++K + P+++ F +++ YG+AR
Sbjct: 239 VAPDRYT---YNTLISCCRRRALYKEAAQVFDEMKA-SGFEPDKVTFNSLLDVYGKARRH 294
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153
+ A++V EM +V + N+L+++ + G L++ L +K I
Sbjct: 295 DEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGI 344
Score = 42.4 bits (98), Expect = 0.075, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F +++ ++ ++ G+ + E+ + ++K IPE + ++IS Y R L + A
Sbjct: 414 FVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMK-KAGYIPERDTYVSLISSYSRCGLFDLA 472
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+Q++ M + V + N +L+AL G+ ++ ++LF
Sbjct: 473 MQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLF 511
Score = 37.4 bits (85), Expect = 2.6, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I+ R +FD QI ++ + + P+ + V+S R E A ++F EM
Sbjct: 456 YVSLISSYSRCGLFDLAMQIYKRMM-EAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEM 514
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
+ + S ++LL+A +LD+MK L
Sbjct: 515 EERDCKPDEYSYSSLLHAYANAKRLDKMKAL 545
Score = 36.2 bits (82), Expect = 4.7, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F + + ++ ++ G+A+ DE +++ +++ P + + ++IS Y + LLE A
Sbjct: 274 FEPDKVTFNSLLDVYGKARRHDEAIEVIQEMER-VGCPPSVVTYNSLISSYVKDGLLEQA 332
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD 139
+ + EM ++ V + TL++ L GK+D
Sbjct: 333 VALKQEMEVKGIKPDVVTYTTLISGLDRAGKID 365
>gi|357480587|ref|XP_003610579.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511634|gb|AES92776.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 706
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
NL+ Y+ ++ +GRAK + + I ++ ++ ++P + +++ YGRAR E AL V
Sbjct: 320 NLVVYNTLLDAMGRAKRPWQARTIYKEMINND-ILPNRATYASLLHAYGRARFCEDALVV 378
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ EM + N+LL G D E+F
Sbjct: 379 YREMREKEMDLNTHLYNSLLAMCADVGYTDLAFEIF 414
>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 724
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 64/134 (47%), Gaps = 11/134 (8%)
Query: 2 NKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKL 61
N +PF+L LL L +++LF K +R++ Y ++I KL
Sbjct: 65 NSFHKITPFQLCKLLELPLDVSTSMELFSWTGSQ---------KGYRHSFDVYQVLIGKL 115
Query: 62 GRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPS-FNVQR 120
G F + ++L Q+K D ++ +E +F +++ Y +A ++ EM + ++ +
Sbjct: 116 GSNGEFKTIDRLLMQMK-DEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEP 174
Query: 121 TVKSLNTLLNALLT 134
T KS N +L L++
Sbjct: 175 TFKSYNVVLEILVS 188
>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
[Vitis vinifera]
Length = 788
Score = 43.9 bits (102), Expect = 0.025, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 14/99 (14%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
FR+NL IT+LG++ DE ++ + H V ++IS + + + A
Sbjct: 16 FRHNLK-----ITQLGKSGQIDEAIKVFQHMTHKNTVTHN-----SMISAFAKNGRISDA 65
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
Q+FD MP QR + S N+++ A L +++ ++LF
Sbjct: 66 RQLFDGMP----QRNIVSWNSMIAAYLHNDRVEEARQLF 100
>gi|356522073|ref|XP_003529674.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 685
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ ++ +GRAK + + I ++ ++ P + + +++ YGR R E AL V
Sbjct: 301 NMVIYNTLLDAMGRAKRPWQAKSIYTEMTNNG-FSPNWVTYASLLRAYGRGRYSEDALFV 359
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGL 159
+ EM ++ NTLL G + E+F A + D
Sbjct: 360 YKEMKEKGMEMNTHLYNTLLAMCADLGLANEAFEIFEDMKTSATCLCDSW 409
>gi|146096442|ref|XP_001467807.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134072173|emb|CAM70874.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 801
Score = 43.9 bits (102), Expect = 0.025, Method: Composition-based stats.
Identities = 24/107 (22%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
R N+ Y L+ R+ +++ QL+ ++PE ++ ++ + R + A
Sbjct: 130 RPNMESYMLLFRACERSALYNRAFLFYQQLREQFHLVPETAVYNTLLGYCAAVRDVAQAT 189
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF---ISFNLK 151
+ +EM NVQR V + N L++ ++ + +F + NLK
Sbjct: 190 FLIEEMKQLNVQRDVNTYNCLMSVMMESAPYEETLRVFQELLYLNLK 236
>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 572
Score = 43.9 bits (102), Expect = 0.025, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 92 NVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNL 150
+V++ Y +A L+ HA ++FDEMP +R V S + L+N + CGK +LF L
Sbjct: 132 SVVNAYAKAGLINHARKLFDEMP----ERNVISWSCLINGYVMCGKYKEALDLFREMQL 186
>gi|357476703|ref|XP_003608637.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355509692|gb|AES90834.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 715
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/152 (18%), Positives = 66/152 (43%), Gaps = 10/152 (6%)
Query: 20 KHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKH 79
+ K AL+L+K N + + + Y+ ++ + +E + + +K
Sbjct: 379 RWSKDALELWKRMKENG----------WPMDFILYNTLLNMCADVGLIEEAETLFRDMKQ 428
Query: 80 DTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD 139
P+ + +++ YG ++ A+++F+EM F ++ V L+ L ++D
Sbjct: 429 SEHCKPDSWSYTAMLNIYGSEGAVDKAMKLFEEMSKFGIELNVMGCTCLIQCLGKAMEID 488
Query: 140 RMKELFISFNLKAIAVLDGLCSNLKIIMNDSQ 171
+ ++F + + D LC L +++ SQ
Sbjct: 489 DLVKVFDISVERGVKPDDRLCGCLLSVVSLSQ 520
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 15/103 (14%)
Query: 50 NLLHYDLIITKLGRA-------KMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARL 102
NL+ Y+ ++ +G+A +F+EM D+ + P E VI YG+AR
Sbjct: 329 NLVVYNTLLEAMGKAGKPGFARSLFEEM--------IDSGIAPNEKTLTAVIKIYGKARW 380
Query: 103 LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ AL+++ M NTLLN G ++ + LF
Sbjct: 381 SKDALELWKRMKENGWPMDFILYNTLLNMCADVGLIEEAETLF 423
>gi|115458614|ref|NP_001052907.1| Os04g0446100 [Oryza sativa Japonica Group]
gi|38344550|emb|CAD40961.2| OSJNBa0027P08.18 [Oryza sativa Japonica Group]
gi|113564478|dbj|BAF14821.1| Os04g0446100 [Oryza sativa Japonica Group]
Length = 583
Score = 43.9 bits (102), Expect = 0.025, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 46/92 (50%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+++++ L R ++L +L+ D +P + F +VIS Y +A LE A+ V+++M
Sbjct: 289 HNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDM 348
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ + + N L+N G L E++
Sbjct: 349 VASGIMPNTVTYNVLINGYGKVGDLGSAVEVY 380
>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g22470, mitochondrial-like [Glycine max]
Length = 468
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 9/119 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+++I L + K DE +L ++ H ++P+ + + ++I ++ + AL +
Sbjct: 252 NVYSYNIMINGLCKCKRVDEAMNLLREMLHK-NMVPDTVTYNSLIDGLCKSGRITSALNL 310
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLC 160
+EM V + +LL+AL LD+ LF+ + I A++DGLC
Sbjct: 311 MNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLC 369
>gi|404357539|gb|AFR63762.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357545|gb|AFR63765.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357569|gb|AFR63777.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357597|gb|AFR63791.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357599|gb|AFR63792.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357603|gb|AFR63794.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357605|gb|AFR63795.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357613|gb|AFR63799.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357623|gb|AFR63804.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357625|gb|AFR63805.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357633|gb|AFR63809.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357635|gb|AFR63810.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357779|gb|AFR63882.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357781|gb|AFR63883.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357783|gb|AFR63884.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357785|gb|AFR63885.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357787|gb|AFR63886.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357789|gb|AFR63887.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357791|gb|AFR63888.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357793|gb|AFR63889.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357795|gb|AFR63890.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357797|gb|AFR63891.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357799|gb|AFR63892.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357801|gb|AFR63893.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357803|gb|AFR63894.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357807|gb|AFR63896.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357809|gb|AFR63897.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357811|gb|AFR63898.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357813|gb|AFR63899.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357815|gb|AFR63900.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357819|gb|AFR63902.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357821|gb|AFR63903.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357823|gb|AFR63904.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357825|gb|AFR63905.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357827|gb|AFR63906.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357831|gb|AFR63908.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357833|gb|AFR63909.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357835|gb|AFR63910.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357839|gb|AFR63912.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357841|gb|AFR63913.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357923|gb|AFR63954.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357935|gb|AFR63960.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357937|gb|AFR63961.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357943|gb|AFR63964.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357947|gb|AFR63966.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357951|gb|AFR63968.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357959|gb|AFR63972.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357963|gb|AFR63974.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357973|gb|AFR63979.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357975|gb|AFR63980.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357977|gb|AFR63981.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357985|gb|AFR63985.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357987|gb|AFR63986.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357991|gb|AFR63988.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357993|gb|AFR63989.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357995|gb|AFR63990.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357999|gb|AFR63992.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358001|gb|AFR63993.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358003|gb|AFR63994.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358005|gb|AFR63995.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358007|gb|AFR63996.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358009|gb|AFR63997.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358011|gb|AFR63998.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358013|gb|AFR63999.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358015|gb|AFR64000.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358017|gb|AFR64001.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358019|gb|AFR64002.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358021|gb|AFR64003.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358023|gb|AFR64004.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358025|gb|AFR64005.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358027|gb|AFR64006.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358029|gb|AFR64007.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358031|gb|AFR64008.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358033|gb|AFR64009.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358035|gb|AFR64010.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358037|gb|AFR64011.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358039|gb|AFR64012.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358041|gb|AFR64013.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358043|gb|AFR64014.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358045|gb|AFR64015.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358047|gb|AFR64016.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358049|gb|AFR64017.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358051|gb|AFR64018.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358053|gb|AFR64019.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358055|gb|AFR64020.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358057|gb|AFR64021.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358059|gb|AFR64022.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358061|gb|AFR64023.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358063|gb|AFR64024.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358065|gb|AFR64025.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358067|gb|AFR64026.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358069|gb|AFR64027.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358071|gb|AFR64028.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358073|gb|AFR64029.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358075|gb|AFR64030.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358077|gb|AFR64031.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358081|gb|AFR64033.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358083|gb|AFR64034.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358085|gb|AFR64035.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358087|gb|AFR64036.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358089|gb|AFR64037.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358093|gb|AFR64039.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358095|gb|AFR64040.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358097|gb|AFR64041.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358099|gb|AFR64042.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358101|gb|AFR64043.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358105|gb|AFR64045.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358111|gb|AFR64048.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358113|gb|AFR64049.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358115|gb|AFR64050.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358117|gb|AFR64051.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
Length = 187
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 92 NVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+V++ Y +A L+++A ++FDEMP +R V S + L+N + CGK +LF
Sbjct: 37 SVVNAYAKAGLIDYARKLFDEMP----ERNVISWSCLINGYVMCGKYKEALDLF 86
>gi|404357561|gb|AFR63773.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
Length = 187
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 92 NVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+V++ Y +A L+++A ++FDEMP +R V S + L+N + CGK +LF
Sbjct: 37 SVVNAYAKAGLIDYARKLFDEMP----ERNVISWSCLINGYVMCGKYKEALDLF 86
>gi|326534218|dbj|BAJ89459.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 624
Score = 43.9 bits (102), Expect = 0.026, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 84 IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKE 143
+P + V+S A ++ AL+VF +PS ++RT + N L AL G+ D+++
Sbjct: 163 LPNARTYTVVVSHLAGAGFVDQALEVFRLLPSLRIRRTTRQYNVLAEALAEAGRFDQLRW 222
Query: 144 LFISFNLKAIAVLDGL 159
L ++ +A +DG+
Sbjct: 223 L-----VREMAAVDGV 233
>gi|452825793|gb|EME32788.1| mitochondrial protein translocase, MPT family [Galdieria
sulphuraria]
Length = 821
Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 11/111 (9%)
Query: 21 HPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD 80
P+ AL+LF+ + + +KP Y Y +I+ RA + I ++ H+
Sbjct: 438 EPERALKLFQ-------EMKEANVKPNNY---CYSSLISAFCRAGYVERALAIFEEMTHE 487
Query: 81 TRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA 131
R++P+ F +I +G+ R ++ A +++D M +Q + N L++A
Sbjct: 488 -RIVPDVFAFNALIDGFGKLRQVDKAFEIYDRMRKLQIQPDRITFNALISA 537
>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Cucumis sativus]
Length = 831
Score = 43.9 bits (102), Expect = 0.027, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+L Y+ +I+ R +++E ++ ++K P+++ + ++ YG++R A++V
Sbjct: 290 DLYTYNTLISSCRRGSLYEEAAEVFEEMKA-AGFSPDKVTYNALLDVYGKSRRPREAMEV 348
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
EM + ++ + N+L++A G LD EL
Sbjct: 349 LKEMEASGFAPSIVTYNSLISAYARDGLLDEAMEL 383
Score = 36.2 bits (82), Expect = 5.2, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+L Y+ ++ L R ++++ +++L ++K D R P E+ +C+++ Y + +E +
Sbjct: 535 DLSTYNAVLAALARGGLWEQSEKVLAEMK-DGRCKPNELTYCSLLHAYANGKEVERMSAL 593
Query: 110 FDEMPSFNVQRTVKSLNTLL 129
+E+ S ++ L TL+
Sbjct: 594 AEEIYSGIIEPQAVLLKTLV 613
>gi|404357587|gb|AFR63786.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357591|gb|AFR63788.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
Length = 187
Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 92 NVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+V++ Y +A L+++A ++FDEMP +R V S + L+N + CGK +LF
Sbjct: 37 SVVNAYAKAGLIDYARKLFDEMP----ERNVISWSCLINGYVMCGKYKEALDLF 86
>gi|297804554|ref|XP_002870161.1| hypothetical protein ARALYDRAFT_915114 [Arabidopsis lyrata subsp.
lyrata]
gi|297315997|gb|EFH46420.1| hypothetical protein ARALYDRAFT_915114 [Arabidopsis lyrata subsp.
lyrata]
Length = 702
Score = 43.9 bits (102), Expect = 0.027, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 38 DTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFY 97
+ +A +KP NL+ Y+ ++ +GRAK +I+H+ P + +I Y
Sbjct: 305 EMKALGVKP---NLVIYNRLLDSMGRAKR-PWQAKIIHKDLISNGFTPNWSTYAALIRAY 360
Query: 98 GRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
GRAR + AL ++ EM + TV NTLL+ G +D E+F
Sbjct: 361 GRARYGDDALVIYREMKEKGLSLTVILYNTLLSMCADIGYVDEAFEIF 408
>gi|413951889|gb|AFW84538.1| hypothetical protein ZEAMMB73_463361, partial [Zea mays]
Length = 423
Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
NL Y++I+ L D + L+ V P+ + + ++S + L++AL +
Sbjct: 198 NLQTYNIILRSLCARGDVDRAVSLFSSLRRRG-VAPDRVTYSTLMSGLVKHDQLDNALDL 256
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF--------ISFNLKAIAV-LDGLC 160
DEMP + VQ N LL+ G ++ +++ S NL V LDGLC
Sbjct: 257 LDEMPDYGVQADAVCYNALLSGCFKTGMFEKAIKVWEQLVRDPGASPNLATYKVMLDGLC 316
>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Glycine max]
Length = 905
Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F +L+ Y++ I G+ D + H+LK ++P+++ F ++I +A ++ A
Sbjct: 268 FNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQG-LVPDDVTFTSMIGVLCKAERVDEA 326
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+++F+E+ S V + NT++ + GK + L
Sbjct: 327 VELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLL 365
Score = 39.7 bits (91), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 62/129 (48%), Gaps = 12/129 (9%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ I+T LGR +E +IL +K D P + +I +A LE AL+V
Sbjct: 376 SVIAYNCILTCLGRKGKVEEALRILEAMKMDA--APNLTSYNILIDMLCKAGELEAALKV 433
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA--------IAVLDGLCS 161
D M + + ++N +++ L +LD +F+ + K +++DGL
Sbjct: 434 QDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGR 493
Query: 162 NLKIIMNDS 170
+ K+ ND+
Sbjct: 494 HGKV--NDA 500
>gi|357480939|ref|XP_003610755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512090|gb|AES93713.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 596
Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 46 PFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEH 105
P+ ++ Y+L++ LG+AK FD M +++ ++K + + + V+ + +A+ E
Sbjct: 206 PYVHSPEVYNLMVDILGKAKEFDLMWKLVKEMKRIEGYVCLDTM-SKVMRRFAKAQRHED 264
Query: 106 ALQVFDEMPSFNVQRTVKSLNTLLNALL 133
A++ F M + V++ +LN LL+AL+
Sbjct: 265 AVEAFRGMGKYGVEKDTAALNKLLDALV 292
Score = 43.5 bits (101), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N + Y +++ G+A + + ++K D ++P+ + +++ G+A L+ A +V
Sbjct: 384 NAVTYTILLLGYGKAGQLSKALEEYERMKKDG-IVPDTPFYSSLMYILGKAGRLKDACEV 442
Query: 110 FDEMPSFNVQRTVKSLNTLLNA 131
FD+MP V R V + NT+++
Sbjct: 443 FDDMPKQGVVRDVVTYNTMIST 464
>gi|357499677|ref|XP_003620127.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495142|gb|AES76345.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 412
Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 67/130 (51%), Gaps = 9/130 (6%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLL 103
L+ N+ Y+++I + KM DE + ++ H ++IP+ + + ++I+ ++ +
Sbjct: 198 LRGVTANVWSYNIMINGFCKIKMTDEAMNLFEEM-HCRKLIPDVVTYNSLINGLCKSGKI 256
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDR-------MKELFISFNLKAIAVL 156
+AL++ DEM + + ++LL+AL ++D+ +K+ I N+ +L
Sbjct: 257 SYALKLVDEMHDRGQPPDIITYSSLLDALCKNHQVDKAIALLKNLKDQGIRPNMYTYTIL 316
Query: 157 -DGLCSNLKI 165
DGLC ++
Sbjct: 317 IDGLCKGGRL 326
>gi|449457845|ref|XP_004146658.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g46100-like [Cucumis sativus]
gi|449484609|ref|XP_004156929.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g46100-like [Cucumis sativus]
Length = 501
Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 65/130 (50%), Gaps = 8/130 (6%)
Query: 4 AKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGR 63
AK +P + L+ ++ K AL +F + A F+++L + L+I+KL
Sbjct: 39 AKTVTPTHVQQLIQAERDIKKALIIF-------DSATAEYANGFKHDLNTFSLMISKLIS 91
Query: 64 AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVK 123
A F + +L ++K + + E+I+ ++ YGR +++VF +M F+ + T K
Sbjct: 92 ANQFRLAETLLDRMKEEKIDVTEDILL-SICRAYGRIHKPLDSIRVFHKMQDFHCKPTEK 150
Query: 124 SLNTLLNALL 133
S ++L L+
Sbjct: 151 SYISVLAILV 160
>gi|404357617|gb|AFR63801.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
Length = 187
Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 92 NVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+V++ Y +A L+++A ++FDEMP +R V S + L+N + CGK +LF
Sbjct: 37 SVVNAYAKAGLIDYARKLFDEMP----ERNVISWSCLINGYVMCGKYKEALDLF 86
>gi|6957728|gb|AAF32472.1| hypothetical protein [Arabidopsis thaliana]
Length = 1077
Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 40 EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR 99
E+ LKP Y Y +II+ + M DE Q+IL + K + + + + +I Y +
Sbjct: 935 ESRGLKPDVYT---YTVIISGYAKGGMMDEAQEILAEAKKKHKKLS-PVTYHALIRGYCK 990
Query: 100 ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNAL-LTCGKLDRMKELFISFNLKAI---AV 155
+ AL++ +EM F VQ N L+ + L ++ + LF K + A+
Sbjct: 991 IEEYDEALKLLNEMDRFGVQPNADEYNKLIQSFCLKALDWEKAEVLFEEMKQKGLHLNAI 1050
Query: 156 LDGLCSNLKIIMNDSQVRVTG 176
GL +K + ++++V G
Sbjct: 1051 SQGLIRAVKEMESEAKVTEDG 1071
>gi|404357925|gb|AFR63955.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357939|gb|AFR63962.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357941|gb|AFR63963.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357949|gb|AFR63967.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357969|gb|AFR63977.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
Length = 187
Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 92 NVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+V++ Y +A L+++A ++FDEMP +R V S + L+N + CGK +LF
Sbjct: 37 SVVNAYAKAGLIDYARKLFDEMP----ERNVISWSCLINGYVMCGKYKEALDLF 86
>gi|224091084|ref|XP_002309173.1| predicted protein [Populus trichocarpa]
gi|222855149|gb|EEE92696.1| predicted protein [Populus trichocarpa]
Length = 506
Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+D I L + F + +L L+ P E F +I YGR A+++F +
Sbjct: 80 FDFIFKTLVKTSQFHHIPSVLDHLEKVESFEPPESTFAYLIEVYGRTNKTHEAIELFYRI 139
Query: 114 PSFNVQRTVKSLNTLLNAL 132
P F +V SLNTL++ L
Sbjct: 140 PKFRCVPSVYSLNTLISVL 158
>gi|404357601|gb|AFR63793.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357609|gb|AFR63797.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357621|gb|AFR63803.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357627|gb|AFR63806.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357637|gb|AFR63811.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357641|gb|AFR63813.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357643|gb|AFR63814.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357645|gb|AFR63815.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357649|gb|AFR63817.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357931|gb|AFR63958.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357945|gb|AFR63965.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357989|gb|AFR63987.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
Length = 187
Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 92 NVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+V++ Y +A L+++A ++FDEMP +R V S + L+N + CGK +LF
Sbjct: 37 SVVNAYAKAGLIDYARKLFDEMP----ERNVISWSCLINGYVMCGKYKEALDLF 86
>gi|125573832|gb|EAZ15116.1| hypothetical protein OsJ_30529 [Oryza sativa Japonica Group]
Length = 906
Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
YD II L R + E + L Q+ + + P+EII+ ++I+ Y R + ++FDEM
Sbjct: 483 YDSIIVCLCRMRRLKEAEATLRQMIREG-LAPDEIIYTSLINGYSLTRQTRNVCRIFDEM 541
Query: 114 PSFNVQRTVKSLNTLLNALL-------TCGKLDRMKELFIS 147
+Q + +L+N L+ G L+RM E I+
Sbjct: 542 LKRGLQPGPHAYGSLINGLVKGNKIRKALGYLERMLEEGIA 582
>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
Length = 468
Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
KP +Y Y +I L RA+ + +++ ++ + P+ + + ++I+ Y + ++
Sbjct: 255 KPNKYT---YTTLIAGLCRAEKVIQARELFEKMTQAC-IPPDAVAYNSLIAGYCKRGSMD 310
Query: 105 HALQVFDEMPS-FNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAV 155
A +++ EM +Q T+ + NTL++ GKL R EL K +A
Sbjct: 311 EAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAA 362
>gi|224140235|ref|XP_002323489.1| predicted protein [Populus trichocarpa]
gi|222868119|gb|EEF05250.1| predicted protein [Populus trichocarpa]
Length = 915
Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 93 VISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN 149
+I YG+ L+HA+ +FDEMP QR + S NT++++L+ ++ ELF N
Sbjct: 244 LIGLYGKCGCLDHAIHLFDEMP----QRDIASWNTMISSLVKGLSYEKALELFRVLN 296
>gi|22655258|gb|AAM98219.1| unknown protein [Arabidopsis thaliana]
gi|31376375|gb|AAP49514.1| At2g38420 [Arabidopsis thaliana]
Length = 444
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L ++ + + +L+ L+ + E IF +VI+ YG + +E A++VF ++
Sbjct: 66 YRFVIKTLAKSSQLENISSVLYHLEVSEKFDTPESIFRDVIAAYGFSGRIEEAIEVFFKI 125
Query: 114 PSFNVQRTVKSLNTLLNALL 133
P+F + +LN LL L+
Sbjct: 126 PNFRCVPSAYTLNALLLVLV 145
>gi|17047023|gb|AAL34928.1|AC079037_1 Putative PPR-repeat protein [Oryza sativa]
gi|31429883|gb|AAP51872.1| hypothetical protein LOC_Os10g02650 [Oryza sativa Japonica Group]
Length = 949
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
YD II L R + E + L Q+ + + P+EII+ ++I+ Y R + ++FDEM
Sbjct: 506 YDSIIVCLCRMRRLKEAEATLRQMIREG-LAPDEIIYTSLINGYSLTRQTRNVCRIFDEM 564
Query: 114 PSFNVQRTVKSLNTLLNALL-------TCGKLDRMKELFIS 147
+Q + +L+N L+ G L+RM E I+
Sbjct: 565 LKRGLQPGPHAYGSLINGLVKGNKIRKALGYLERMLEEGIA 605
>gi|387219215|gb|AFJ69316.1| genomes uncoupled 1 protein, partial [Nannochloropsis gaditana
CCMP526]
Length = 366
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N + Y +I K + ++ +++ D V+P+ + + N++ Y R E L
Sbjct: 236 NKVTYGAVINACAYGKDMAAARLVMDEMRSDG-VMPDAVEYSNLLHGYKRLNATEECLAC 294
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGK-------LDRMKE 143
FDEM + ++ T ++ + +L AL + LDRM++
Sbjct: 295 FDEMLFYGIKATTRTYDGVLGALAAAERWPVFRMYLDRMRK 335
>gi|359495626|ref|XP_002269600.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic [Vitis vinifera]
Length = 701
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
NL+ Y+ ++ +GRAK + + I ++ ++ + P + ++ YGRAR E AL V
Sbjct: 315 NLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNG-LQPSWGTYAALLRAYGRARYAEDALIV 373
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ EM ++ +V NTLL G + +F
Sbjct: 374 YKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIF 409
>gi|342183641|emb|CCC93121.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 682
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+ N + ++++ GRAK ++ +++++ + + R+ EE + +++ Y RA ++E
Sbjct: 445 FQENHVTFNILFEGYGRAKRYERIKELVEE-RRAKRIPFEEFGYAVLLNAYSRAHMVEET 503
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF 148
Q+ DEM + V + + L TL + G + ++ E ++S
Sbjct: 504 TQIVDEMVAAGVTFSSRMLATLATSFSYIGDVPKV-EHYVSL 544
>gi|195616298|gb|ACG29979.1| hypothetical protein [Zea mays]
Length = 577
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
Query: 55 DLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMP 114
D + L R MFDE +I+ +K P+ + + ++ +A LE A +V DEM
Sbjct: 316 DGVHRALTRNGMFDEAAEIVQTMKAQGHQ-PDNVTYSQLVYGLCKADKLEDARKVLDEME 374
Query: 115 SFNVQRTVKSLNTLLNALLTCGKLDRMKELF---ISFNLKAIA-----VLDGLCSNLKI 165
+ +K+ L++ G +DR + I L A A +L GLCS+ K+
Sbjct: 375 AEGCVPDLKTWTLLIHGCCLAGDVDRAVQYLTEMIEKGLDADANLLDVILKGLCSHEKV 433
>gi|404357933|gb|AFR63959.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357997|gb|AFR63991.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
Length = 187
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 92 NVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+V++ Y +A L+++A ++FDEMP +R V S + L+N + CGK +LF
Sbjct: 37 SVVNAYAKAGLIDYARKLFDEMP----ERNVISWSCLINGYVMCGKYKEALDLF 86
>gi|449494638|ref|XP_004159605.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49730-like [Cucumis sativus]
Length = 664
Score = 43.5 bits (101), Expect = 0.030, Method: Composition-based stats.
Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 7/127 (5%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
+R++ Y +I LG+ + F + ++ +++ + + +F ++ + R+++ A
Sbjct: 160 YRHSYEVYKAMIKTLGKMRQFGAVWALIEEMRKENPYMLTPEVFIVLMRRFASVRMVKKA 219
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF----ISFNLKA---IAVLDGL 159
++V DEMP + + LL+AL G + LF + FN ++L G
Sbjct: 220 VEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRVRFNPNLRHFTSLLYGW 279
Query: 160 CSNLKII 166
C KI+
Sbjct: 280 CREGKIM 286
>gi|224133318|ref|XP_002321537.1| predicted protein [Populus trichocarpa]
gi|222868533|gb|EEF05664.1| predicted protein [Populus trichocarpa]
Length = 834
Score = 43.5 bits (101), Expect = 0.030, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLL 103
L F+++ Y ++ LGRAK F + ++L Q+ D P + + +I YGRA L
Sbjct: 331 LPGFKHDGYTYTTMVGILGRAKQFVAINKLLDQMVRDG-CQPTVVTYNRLIHSYGRANYL 389
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
A++VF++M + + TL++ G L+ E++
Sbjct: 390 NDAVEVFNQMQKAGCEPDRVTYCTLIDIHAKAGFLNFAMEMY 431
Score = 39.7 bits (91), Expect = 0.43, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F + + Y +++ LG + DE + I ++K V P+E ++ ++ +G+A +E A
Sbjct: 509 FEPDKVTYSIVMEVLGHSGYLDEAEAIFSEMKRKNWV-PDEPVYGLLVDLWGKAGNVEKA 567
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKL 138
+ + M + V + N+LL+A L +L
Sbjct: 568 WEWYQAMLHAGLCPNVPTCNSLLSAFLRVNRL 599
>gi|334184790|ref|NP_181376.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546769|sp|Q8L6Y7.2|PP193_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g38420, mitochondrial; Flags: Precursor
gi|3395430|gb|AAC28762.1| hypothetical protein [Arabidopsis thaliana]
gi|330254441|gb|AEC09535.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 453
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L ++ + + +L+ L+ + E IF +VI+ YG + +E A++VF ++
Sbjct: 75 YRFVIKTLAKSSQLENISSVLYHLEVSEKFDTPESIFRDVIAAYGFSGRIEEAIEVFFKI 134
Query: 114 PSFNVQRTVKSLNTLLNALL 133
P+F + +LN LL L+
Sbjct: 135 PNFRCVPSAYTLNALLLVLV 154
>gi|407392283|gb|EKF26317.1| hypothetical protein MOQ_009997 [Trypanosoma cruzi marinkellei]
Length = 994
Score = 43.5 bits (101), Expect = 0.030, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 57/101 (56%), Gaps = 3/101 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
K + N + ++++ GRA+ F+ M++I+ Q K + V +++I+C + + YGRARL +
Sbjct: 766 KGYTNNAVTHNILADGYGRARRFERMEEIVQQRKA-SGVPMDDLIYCIMATSYGRARLKK 824
Query: 105 HALQVFDEMPSFNVQR--TVKSLNTLLNALLTCGKLDRMKE 143
+++ E+ S + T K + + ++A C + M++
Sbjct: 825 EVHRLYTEVTSPTSRHLFTRKVIWSFIDAFCRCAAPEDMEK 865
>gi|357449339|ref|XP_003594946.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124359380|gb|ABN05846.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355483994|gb|AES65197.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 849
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLL 103
L ++ Y+ ++ G+A ++ E IL +++ D P+ I + +++ Y RA
Sbjct: 336 LNGYKPGTATYNSMLQVFGKAGVYTEALNILKEME-DNNCEPDAITYNELVAAYVRAGFH 394
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCS 161
+ V D M S V + T++NA G D+ E+F +K + + +C+
Sbjct: 395 DEGAAVIDTMASKGVMPNAITYTTVINAYGKAGDADKALEVF--GQMKELGCVPNVCT 450
>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
Length = 471
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+ +I L + + + ++L ++ V P+ I + ++S R + A Q
Sbjct: 148 NTVAYNALINGLCKDENIERAYKLLEEMASKGYV-PDNITYNTILSGLCRMGKVSEAKQF 206
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
FD MPS V + N LL+AL GK D +LF
Sbjct: 207 FDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLF 242
Score = 42.7 bits (99), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 19/162 (11%)
Query: 12 LASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQ 71
L L+ + A++LFK D A P + + Y+ I+ L R DE +
Sbjct: 225 LLDALYKEGKTDEAMKLFK-------DVIAKGYMP---DTVTYNSILLGLARKSNMDEAE 274
Query: 72 QILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA 131
++ ++ + P + V+S + RA+ ++ A +V +EM V + N LL+
Sbjct: 275 EMFKKMVA-SGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDG 333
Query: 132 LLTCGKLDRMKELFISFNLKAIA--------VLDGLCSNLKI 165
L +D+ ELF + A VL+GLC K+
Sbjct: 334 LCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKV 375
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 80 DTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD 139
D + P+ I + +I Y + ++ A ++++EM S ++ ++ + N+LLNA K+
Sbjct: 36 DNGISPDGIEYNILIDGYAKKGRVDEANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMK 95
Query: 140 RMKELFISFNLKAI--------AVLDGLCSNLKI 165
ELF + K ++ GLC K+
Sbjct: 96 EAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKV 129
>gi|449463822|ref|XP_004149630.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49730-like [Cucumis sativus]
Length = 641
Score = 43.5 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 7/127 (5%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
+R++ Y +I LG+ + F + ++ +++ + + +F ++ + R+++ A
Sbjct: 137 YRHSYEVYKAMIKTLGKMRQFGAVWALIEEMRKENPYMLTPEVFIVLMRRFASVRMVKKA 196
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF----ISFNLKA---IAVLDGL 159
++V DEMP + + LL+AL G + LF + FN ++L G
Sbjct: 197 VEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRVRFNPNLRHFTSLLYGW 256
Query: 160 CSNLKII 166
C KI+
Sbjct: 257 CREGKIM 263
>gi|357142290|ref|XP_003572522.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 669
Score = 43.5 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 59/126 (46%), Gaps = 9/126 (7%)
Query: 40 EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR 99
++ P KP ++ Y+ ++ L RA +++ +++ + P EI F +I+ +
Sbjct: 508 QSMPCKP---DIFSYNAVLKGLCRAARWEDAGELIANMARKD-CPPNEITFNILINSLCQ 563
Query: 100 ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAV---- 155
+ A++VF +MP + + + N L+N G+LD L + + K A+
Sbjct: 564 KGFADRAIEVFKQMPEYGSTPDIFTYNALINGFSEQGRLDDALNLLSTMSCKPDAISYNS 623
Query: 156 -LDGLC 160
L GLC
Sbjct: 624 TLKGLC 629
Score = 43.5 bits (101), Expect = 0.033, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 9/123 (7%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARL 102
P+ P Y Y+ ++ L AK +++ ++++ ++ + P E+ F I + + L
Sbjct: 205 PVAPDTYT---YNTVLKGLCGAKQWEKAEELMEEMIRNN-CHPNEVTFATQIRSFCQNGL 260
Query: 103 LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA-----IAVLD 157
L+HA+Q+ + MP + V +TL+N G++D L + K A L
Sbjct: 261 LDHAVQLLERMPRYGCTPDVVIYSTLVNGFSEQGRVDDALVLLNTMLCKPNTVCYNAALK 320
Query: 158 GLC 160
GLC
Sbjct: 321 GLC 323
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 61/117 (52%), Gaps = 8/117 (6%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQ-LKHDTRVIPEEIIFCNVISFYGRARLLEHALQ 108
+ + ++ + L R + + ++++++ Q L+ D +I E+ F +I + L+ HA++
Sbjct: 413 DTISFNAALKALCRTERWYDVEELIAQMLREDCPLI--EMTFNILIDSLCQHGLVNHAIE 470
Query: 109 VFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI-----AVLDGLC 160
VF++MP + + + ++L+N G ++ ELF S K AVL GLC
Sbjct: 471 VFEQMPKYRCTPDIVTYSSLINGFSEQGLVESAIELFQSMPCKPDIFSYNAVLKGLC 527
>gi|297839351|ref|XP_002887557.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333398|gb|EFH63816.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 845
Score = 43.5 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+++ Y ++ LGRAK F + ++L ++ D P + + +I YGRA L A
Sbjct: 345 FKHDGHTYTTMVGNLGRAKQFGAINRLLDEMVKDG-CKPNTVTYNRLIHSYGRANYLNEA 403
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ VF +M + + TL++ G LD +++
Sbjct: 404 MNVFKQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMY 442
Score = 40.4 bits (93), Expect = 0.25, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+ + + Y +++ LG +E + + +++ V P+E ++ ++ +G+A +E A
Sbjct: 520 FQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWV-PDEPVYGLLVDLWGKAGNVEKA 578
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
Q + EM ++ V + N+LL+ L ++ RM E +
Sbjct: 579 WQWYQEMLHAGLRPNVPTCNSLLSTFL---RVHRMSEAY 614
>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
Length = 552
Score = 43.5 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 58/118 (49%), Gaps = 10/118 (8%)
Query: 57 IITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSF 116
+I L +++ D+ + Q+ D + P+ + + +I G+ R ++ A +F+E +
Sbjct: 1 MIDGLCKSRKVDKAITLFKQMV-DKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAK 59
Query: 117 NVQRTVKSLNTLLNALLTCGKLDRMKELF----ISFNLKAIAV-----LDGLCSNLKI 165
TV + NT+++ L CG+++ L+ I F + V +DGLC + ++
Sbjct: 60 GCHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEV 117
>gi|404444716|ref|ZP_11009869.1| alpha/beta hydrolase domain-containing protein, partial
[Mycobacterium vaccae ATCC 25954]
gi|403653396|gb|EJZ08385.1| alpha/beta hydrolase domain-containing protein, partial
[Mycobacterium vaccae ATCC 25954]
Length = 139
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 72 QILHQLKHDTRVIPEEIIFCNVISFYGRA-RLLEHALQVFDEMPSFNVQRTVKSLNTLLN 130
Q+LHQ D R+ P + F F G A + + E+P V + L+ L
Sbjct: 12 QLLHQPVLDDRLSPSKEEFLTTPGFDGEAVQWMWRHYGAGAEVPEEAVPARAEDLSGLPP 71
Query: 131 ALLTCGKLDRMKELFISFNLK--------AIAVLDGLCSNLKIIMNDSQV 172
AL+TC +LD +++ I + L+ + V G C ++ D +V
Sbjct: 72 ALITCSELDPLRDEAIDYGLRLLWSGVGTGLHVFSGTCHGFDSLVPDWEV 121
>gi|115475728|ref|NP_001061460.1| Os08g0290000 [Oryza sativa Japonica Group]
gi|38175588|dbj|BAD01297.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|38175668|dbj|BAD01373.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113623429|dbj|BAF23374.1| Os08g0290000 [Oryza sativa Japonica Group]
gi|125602875|gb|EAZ42200.1| hypothetical protein OsJ_26764 [Oryza sativa Japonica Group]
Length = 806
Score = 43.5 bits (101), Expect = 0.033, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ + ++I L R + F E+ +L +++ V P E+I+ +I ++ R AL++
Sbjct: 290 SVVTFGILINGLARGERFGEVGIVLQEMEQ-LGVSPNEVIYNELIGWHCRKGHCSQALRL 348
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
FDEM ++ T + N + AL G+++R + +
Sbjct: 349 FDEMVLKKMKPTAVTYNLIAKALCKEGEMERAERIL 384
>gi|218200855|gb|EEC83282.1| hypothetical protein OsI_28637 [Oryza sativa Indica Group]
Length = 662
Score = 43.5 bits (101), Expect = 0.033, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ + ++I L R + F E+ +L +++ V P E+I+ +I ++ R AL++
Sbjct: 80 SVVTFGILINGLARGERFGEVGIVLQEMEQ-LGVSPNEVIYNELIGWHCRKGHCSQALRL 138
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
FDEM ++ T + N + AL G+++R + +
Sbjct: 139 FDEMVLKKMKPTAVTYNLIAKALCKEGEMERAERIL 174
>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
Length = 715
Score = 43.5 bits (101), Expect = 0.033, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+ + Y ++ L RA+ +++ +++L ++ P E+ F I + L+E A +
Sbjct: 385 DTISYTTVLKGLCRAERWEDAKELLKEMVRKN-CPPNEVTFNTFICILCQKGLIEQATML 443
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA-----IAVLDGLCS 161
++M + + + N L+N G++D ELF S K +L GLC+
Sbjct: 444 IEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTGLCN 500
Score = 42.0 bits (97), Expect = 0.088, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 57/122 (46%), Gaps = 9/122 (7%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+ + + Y ++ L AK +++++++ ++ + +P E+ F ++ F+ R ++E A
Sbjct: 277 FQPDTVSYTTVLKGLCAAKRWEDVEELFAEMM-EKNCMPNEVTFDMLVRFFCRGGMVERA 335
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF--------NLKAIAVLDG 158
+QV ++M N ++N + G++D + + + VL G
Sbjct: 336 IQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKG 395
Query: 159 LC 160
LC
Sbjct: 396 LC 397
>gi|440800754|gb|ELR21789.1| pentatricopeptide repeat domain/PPR repeatcontaining protein
[Acanthamoeba castellanii str. Neff]
Length = 559
Score = 43.5 bits (101), Expect = 0.034, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N Y+ ++ G+ +M D+M+ ++ +++ D + + V++ + RA ++ AL+
Sbjct: 205 NRTTYNAMVHSYGQQQMMDKMEALVERMRADPGLGLDNFTHSAVVAAWSRAGRVDKALEA 264
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGK-------LDRMKEL 144
FD + + Q ++ + +L+ L T G+ LD+MK L
Sbjct: 265 FDSIAATGGQPSLHAWTAILHMLGTAGRSDEMLRTLDKMKRL 306
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 57 IITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSF 116
I+ LG A DEM + L ++K V P ++ +I+ +G+AR + + F M
Sbjct: 283 ILHMLGTAGRSDEMLRTLDKMKR-LGVKPSTAVYNTIINAFGKARNIHSMMDTFKAMRRD 341
Query: 117 NVQRTVKSLNTLLNALLTCGKLDRMKELFI 146
V VK+ NTL++ GK ++ ++
Sbjct: 342 GVAADVKTYNTLIDTWAKTGKAVEAEKFYV 371
>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 585
Score = 43.5 bits (101), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 63/133 (47%), Gaps = 11/133 (8%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I + K D+ + +++ H +IP + + ++I ++ + +ALQ+ D+M
Sbjct: 338 YNILINGFCKIKKVDKAMNLFNEM-HCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQM 396
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA--------VLDGLC--SNL 163
V + + N++++AL ++D+ L F + I ++DGLC
Sbjct: 397 HDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKVEGY 456
Query: 164 KIIMNDSQVRVTG 176
I +N V + G
Sbjct: 457 DITVNTYNVMIHG 469
>gi|293335157|ref|NP_001169529.1| uncharacterized protein LOC100383403 [Zea mays]
gi|224029903|gb|ACN34027.1| unknown [Zea mays]
gi|414887232|tpg|DAA63246.1| TPA: hypothetical protein ZEAMMB73_160132 [Zea mays]
Length = 819
Score = 43.5 bits (101), Expect = 0.034, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
R +++ Y ++ GR+ ++ +++ ++++ + P ++ + +I YG A +L+ A
Sbjct: 396 LRPDIVSYTSLLNAYGRSAQPEKAREVFNEMRKNA-CKPNKVSYNALIDAYGSAGMLKEA 454
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRM 141
+ + EM +Q V S++TLL A C +L ++
Sbjct: 455 ISLLHEMEQDGIQPDVISISTLLTACGRCKQLTKI 489
>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 1058
Score = 43.5 bits (101), Expect = 0.034, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 10/96 (10%)
Query: 64 AKMFDEMQQILHQLKHDT----RVIPEEIIF-CNV-ISFYGRARLLEHALQVFDEMPSFN 117
A+ D +QQ ++H + + P+ +F CN I GR +E A +VF+EM
Sbjct: 142 ARWMDYLQQFKFVIRHKSGAKNKETPQTHLFQCNTRIQELGRLGRVEEARRVFNEM---- 197
Query: 118 VQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153
+QR V S N+++N GK+D + LF +F K I
Sbjct: 198 IQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNI 233
>gi|218184051|gb|EEC66478.1| hypothetical protein OsI_32564 [Oryza sativa Indica Group]
Length = 481
Score = 43.5 bits (101), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
YD II L R + E + L Q+ + + P+EII+ ++I+ Y R + ++FDEM
Sbjct: 58 YDSIIVCLCRMRRLKEAEATLRQMIREG-LAPDEIIYTSLINGYSLTRQTRNVCRIFDEM 116
Query: 114 PSFNVQRTVKSLNTLLNALL-------TCGKLDRMKELFIS 147
+Q + +L+N L+ G L+RM E I+
Sbjct: 117 LKRGLQPGPHAYGSLINGLVKGNKIRKALGYLERMLEEGIA 157
>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
Length = 544
Score = 43.5 bits (101), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y +II + +E ++ ++ ++ +P + F +I+ + +A +LE A+++
Sbjct: 242 NVFTYSIIINCYCKLDKVEEAWEVFMKMI-ESNCVPNAVTFNTLIAGFCKAGMLEDAIKL 300
Query: 110 FDEMPSFNVQRTVKSLNTLLNAL 132
F EM + T+ + NTL+++L
Sbjct: 301 FAEMEKIGCKATIVTYNTLIDSL 323
>gi|212722066|ref|NP_001132329.1| uncharacterized protein LOC100193771 [Zea mays]
gi|194694094|gb|ACF81131.1| unknown [Zea mays]
Length = 502
Score = 43.5 bits (101), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
Query: 55 DLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMP 114
D + L R MFDE +I+ +K P+ + + ++ +A LE A +V DEM
Sbjct: 241 DGVHRALTRNGMFDEAAEIVQTMKAQGHQ-PDNVTYSQLVYGLCKADKLEDARKVLDEME 299
Query: 115 SFNVQRTVKSLNTLLNALLTCGKLDRMKELF---ISFNLKAIA-----VLDGLCSNLKI 165
+ +K+ L++ G +DR + I L A A +L GLCS+ K+
Sbjct: 300 AEGCVPDLKTWTLLIHGCCLAGDVDRAVQYLTEMIEKGLDADANLLDVILKGLCSHEKV 358
>gi|154335381|ref|XP_001563929.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134060960|emb|CAM37977.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 1002
Score = 43.5 bits (101), Expect = 0.035, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
K + N + Y++++ GRAK ++++++ L Q + + ++I +C +IS YGR+RL +
Sbjct: 768 KGYTDNNVTYNILMDGHGRAKAYEQLEE-LRQKRSAAGIAMDDITYCIMISAYGRSRLGK 826
Query: 105 HALQVFDEM 113
++FDE+
Sbjct: 827 DVQRLFDEV 835
>gi|242050640|ref|XP_002463064.1| hypothetical protein SORBIDRAFT_02g037020 [Sorghum bicolor]
gi|241926441|gb|EER99585.1| hypothetical protein SORBIDRAFT_02g037020 [Sorghum bicolor]
Length = 558
Score = 43.5 bits (101), Expect = 0.035, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+ +++ Y ++ GR+ + ++ +++ ++++ + P ++ + +I YG A +L+ A
Sbjct: 396 FKPDIVSYTSLLNAYGRSALPEKAREVFNEMRKNA-CKPNKVSYNALIDAYGSAGMLKEA 454
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGK 137
+ + EM +Q V S++TLL A CG+
Sbjct: 455 ISLLHEMEQDGIQPDVISISTLLTA---CGR 482
>gi|242037185|ref|XP_002465987.1| hypothetical protein SORBIDRAFT_01g049600 [Sorghum bicolor]
gi|241919841|gb|EER92985.1| hypothetical protein SORBIDRAFT_01g049600 [Sorghum bicolor]
Length = 480
Score = 43.5 bits (101), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 43/96 (44%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N + ++ II G+A MF+EM+ L + +P+ +VI YG + +
Sbjct: 231 NSVIHNAIIDGYGKAAMFEEMEGALSAMLESGSNVPDIYTMNSVIGAYGNHGRTDEMEKS 290
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ E V+ K+ N ++ + G D+M +F
Sbjct: 291 YSEFQLMGVEPDTKTFNIMIKSYGKAGMYDKMMSIF 326
>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Brachypodium distachyon]
Length = 651
Score = 43.5 bits (101), Expect = 0.036, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ + +I R D + L +++ + ++P+ +I+ VI + RA L+ AL+V
Sbjct: 298 DVVSFSCLIGLFTRRGEMDHAAEYLREMR-EFGLMPDGVIYTMVIGGFCRAGLMLEALRV 356
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKII 166
DEM +F V + NTLLN L +L +EL +K V LC+ +I
Sbjct: 357 RDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELL--NEMKERGVPPDLCTFTTLI 411
Score = 41.2 bits (95), Expect = 0.16, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ ++ L + + + +++L+++K + V P+ F +I Y R +E ALQ
Sbjct: 368 DVVTYNTLLNGLCKERRLSDAEELLNEMK-ERGVPPDLCTFTTLIHGYCRDGNIEKALQF 426
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
FD + ++ + + NTL++ + G L + EL+
Sbjct: 427 FDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELW 462
Score = 37.0 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 1/104 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ II R+ + QQ L +++HD +V+P+ I + +I Y + + A +
Sbjct: 508 NIMTYNSIIKGYCRSGNVSKGQQFLPKMRHD-KVMPDLITYNTLIHGYVKEGKMHEAFNL 566
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153
M + NVQ + N +++ G + ++ + I
Sbjct: 567 LKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGI 610
>gi|224111544|ref|XP_002315895.1| predicted protein [Populus trichocarpa]
gi|222864935|gb|EEF02066.1| predicted protein [Populus trichocarpa]
Length = 424
Score = 43.5 bits (101), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 11/139 (7%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
+L L LAL F+ A K F+Y+ Y +I LG+ K F+ + +
Sbjct: 11 ALKKLSNAGALALSFFR---------WAEKQKGFQYSTESYHALIESLGKIKQFNVIWNL 61
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
+ +K + E F + Y RAR ++ A+ F +M F ++ +N LL+ L
Sbjct: 62 VTDMKQKGLLNKE--TFALISRRYARARKVKEAVDAFMKMEKFGLKIESSDVNRLLDTLC 119
Query: 134 TCGKLDRMKELFISFNLKA 152
+++R + +F N +
Sbjct: 120 KSRQVERAQLVFDKMNKRG 138
>gi|413917008|gb|AFW56940.1| plastid transcriptionally active 12-like protein [Zea mays]
Length = 600
Score = 43.5 bits (101), Expect = 0.036, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Query: 67 FDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLN 126
+ E+ I Q++ + P+ + + +I YG+AR E AL VF+EM V+ T KS N
Sbjct: 296 YKEVSNIYDQMQR-AGLKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYN 354
Query: 127 TLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIM 167
LL+A G ++ +F + ++ V LCS +++
Sbjct: 355 ILLDAFAISGLVEEANTVFRA--MRRHRVEPDLCSYTTMVL 393
>gi|224058846|ref|XP_002299640.1| predicted protein [Populus trichocarpa]
gi|222846898|gb|EEE84445.1| predicted protein [Populus trichocarpa]
Length = 609
Score = 43.5 bits (101), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 51 LLHYDLIITKLGRA-KMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+ Y +I LG++ ++ D L+ LK + P+ ++ N+I+ +G+A LE AL++
Sbjct: 271 VFTYTELIKGLGKSGRVEDAYSVFLNMLKDGCK--PDVVLINNLINIFGKAGRLEDALKL 328
Query: 110 FDEMPSFNVQRTVKSLNTLLNALL 133
FD+M S V + NT++ AL
Sbjct: 329 FDQMRSLKCAPNVVTYNTVIKALF 352
>gi|255660938|gb|ACU25638.1| pentatricopeptide repeat-containing protein [Citharexylum
montevidense]
Length = 481
Score = 43.5 bits (101), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
++LH K + ALQ F+ Z L F +N + II LGRA + + I
Sbjct: 17 NVLHGAKKSEHALQFFRW-------VZRSNL--FEHNRETHLKIIEILGRASKLNHARCI 67
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L + E++ + +I YG+A +++ ++++F +M V+RT+KS + L +L
Sbjct: 68 LLDMPKKGLQWDEDL-WVLMIDSYGKAGIVQESVKLFHKMEELGVERTIKSYDVLFKVIL 126
Query: 134 TCGKLDRMKELF 145
G+ K F
Sbjct: 127 RRGRYMMAKRYF 138
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD--- 139
+ P+ I + +I+ Y R + +E A + F EM N++ TV + TL+ + ++D
Sbjct: 181 ITPDVITYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTHTTLIKGYVAVDRVDDAL 240
Query: 140 RMKELFISFNLKAIAV-----LDGLCSNLKI 165
R+ E F +K A+ L GLC+ K+
Sbjct: 241 RLVEEMKGFGIKPNAITYSTXLPGLCNAEKM 271
>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
Length = 684
Score = 43.5 bits (101), Expect = 0.037, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+ + Y ++ L RA+ +++ +++L ++ P E+ F I + L+E A +
Sbjct: 354 DTISYTTVLKGLCRAERWEDAKELLKEMVRKN-CPPNEVTFNTFICILCQKGLIEQATML 412
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA-----IAVLDGLCS 161
++M + + + N L+N G++D ELF S K +L GLC+
Sbjct: 413 IEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTGLCN 469
Score = 42.0 bits (97), Expect = 0.093, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 57/122 (46%), Gaps = 9/122 (7%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+ + + Y ++ L AK +++++++ ++ + +P E+ F ++ F+ R ++E A
Sbjct: 246 FQPDTVSYTTVLKGLCAAKRWEDVEELFAEMM-EKNCMPNEVTFDMLVRFFCRGGMVERA 304
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF--------NLKAIAVLDG 158
+QV ++M N ++N + G++D + + + VL G
Sbjct: 305 IQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKG 364
Query: 159 LC 160
LC
Sbjct: 365 LC 366
>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
Length = 684
Score = 43.1 bits (100), Expect = 0.037, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+ + Y ++ L RA+ +++ +++L ++ P E+ F I + L+E A +
Sbjct: 354 DTISYTTVLKGLCRAERWEDAKELLKEMVRKN-CPPNEVTFNTFICILCQKGLIEQATML 412
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA-----IAVLDGLCS 161
++M + + + N L+N G++D ELF S K +L GLC+
Sbjct: 413 IEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTGLCN 469
Score = 42.0 bits (97), Expect = 0.094, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 57/122 (46%), Gaps = 9/122 (7%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+ + + Y ++ L AK +++++++ ++ + +P E+ F ++ F+ R ++E A
Sbjct: 246 FQPDTVSYTTVLKGLCAAKRWEDVEELFAEMM-EKNCMPNEVTFDMLVRFFCRGGMVERA 304
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF--------NLKAIAVLDG 158
+QV ++M N ++N + G++D + + + VL G
Sbjct: 305 IQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKG 364
Query: 159 LC 160
LC
Sbjct: 365 LC 366
>gi|168024876|ref|XP_001764961.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683770|gb|EDQ70177.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 743
Score = 43.1 bits (100), Expect = 0.038, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVF 110
L+ Y+ +IT G+A ++D+ +++ +++ + ++P+ I + +I GR L+ AL F
Sbjct: 186 LVGYNSMITAYGKACLYDKAARLVEKMREED-LVPDSITYSCMIGACGRVGKLKEALSWF 244
Query: 111 DEMPSFNVQRTVKSLNTLLN 130
EM ++ + NTL++
Sbjct: 245 AEMKRLEIKPASSNFNTLIS 264
>gi|115529197|dbj|BAF34331.1| pentatricopeptide repeat protein [Physcomitrella patens]
Length = 728
Score = 43.1 bits (100), Expect = 0.038, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVF 110
L+ Y+ +IT G+A ++D+ +++ +++ + ++P+ I + +I GR L+ AL F
Sbjct: 171 LVGYNSMITAYGKACLYDKAARLVEKMREED-LVPDSITYSCMIGACGRVGKLKEALSWF 229
Query: 111 DEMPSFNVQRTVKSLNTLLN 130
EM ++ + NTL++
Sbjct: 230 AEMKRLEIKPASSNFNTLIS 249
>gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera]
Length = 722
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 19/154 (12%)
Query: 19 QKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLK 78
Q+ P+L + F + FR + H +L+I L + FD +IL +LK
Sbjct: 74 QRRPELGFRFF---------IWTTRRRSFRSWVTH-NLVIDMLAKDDGFDTYWKILEELK 123
Query: 79 HDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA------- 131
+ IP F +I+ Y ++ + E A++ F +M F + V + N++L+
Sbjct: 124 NSNIQIPPP-TFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVF 182
Query: 132 LLTCGKLDRMKELFISFNLKAIAV-LDGLCSNLK 164
LL ++M +L + N + L+GLC N K
Sbjct: 183 LLALAVYNQMLKLNYNPNRATFVILLNGLCKNGK 216
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L RAK +DE+Q+ ++ + P+ +++ +I + ++++AL + ++M
Sbjct: 309 YSSLIDGLFRAKRYDEVQEWCRKM-FKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDM 367
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
+ N L+ G LD+ + L
Sbjct: 368 TQRGLSPDTYCYNALIKGFCDVGLLDKARSL 398
>gi|255660892|gb|ACU25615.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
Length = 481
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
++LH K + ALQ F E L F +N + II LGRA + + I
Sbjct: 17 NVLHSSKTSEHALQFFXW-------VERSNL--FEHNRETHLKIIEILGRASKLNHARCI 67
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L + E++ + +I YG+ +++ ++++F +M V+RT+KS N L +L
Sbjct: 68 LLDMPKKGLEWDEDM-WVMMIDSYGKQGIVQESVKMFQKMEELGVERTIKSYNALFKVIL 126
Query: 134 TCGKLDRMKELF 145
G+ K F
Sbjct: 127 RRGRYMMAKRYF 138
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD--- 139
+ P+ + + +I+ Y R + +E A + F EM N++ TV + TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 140 RMKELFISFNLKAIAV-----LDGLCSNLKIIMNDSQVRV 174
R+ E F +K A+ L GLC+ K+ S+ RV
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKM----SEARV 276
>gi|218193742|gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indica Group]
Length = 1874
Score = 43.1 bits (100), Expect = 0.039, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +++ LG+A E +LK D V P+ + ++I GRA LE A V
Sbjct: 1659 NVVTYTILMHALGKAGRTREALDTFDKLKEDG-VAPDASFYNSLIYILGRAGRLEDAYSV 1717
Query: 110 FDEMPSFNVQRTVKSLNTLLNA 131
+EM + + V + NTL++A
Sbjct: 1718 VEEMRTTGIAPNVTTFNTLISA 1739
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
YDL++ LG+ K FD M +++Q+ ++ + + G +R E A+ F +M
Sbjct: 1489 YDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTE-AIDAFHKM 1547
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F V + K++N LL+ L + R + +F
Sbjct: 1548 DRFGVVKDTKAMNVLLDTLCKERSVKRARGVF 1579
>gi|357462685|ref|XP_003601624.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490672|gb|AES71875.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 684
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCN-VISFYGRARLLEHALQ 108
N++ Y+ ++ G A +F E + ++ + +P+ ++ N +IS YG++ + A
Sbjct: 370 NVVSYNTVLRVYGEAGLFGEAVHLFSLMQ--MKGVPQNVVTYNTMISIYGKSLEHDKATN 427
Query: 109 VFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ EM S +Q + +T+++ GKLDR LF
Sbjct: 428 LIQEMQSRGIQPNAITYSTIISIWEKAGKLDRAAMLF 464
Score = 35.4 bits (80), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 73 ILHQLKHDTRVIPEEIIFCNV-ISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA 131
I + LK ++P+ +I CN+ IS YG+A+L A + EM V + S +TLL
Sbjct: 252 IFNALKGSGNIVPD-LIACNMMISVYGKAKLFREARLLLQEMRDNGVNPSTASYSTLLAI 310
Query: 132 LLTCGKLDRMKELFISFN 149
+ K LF N
Sbjct: 311 YVDNQKFVEAVSLFSEMN 328
>gi|21686921|gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza sativa Japonica Group]
Length = 1833
Score = 43.1 bits (100), Expect = 0.039, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +++ LG+A E +LK D V P+ + ++I GRA LE A V
Sbjct: 1618 NVVTYTILMHALGKAGRTREALDTFDKLKEDG-VAPDASFYNSLIYILGRAGRLEDAYSV 1676
Query: 110 FDEMPSFNVQRTVKSLNTLLNA 131
+EM + + V + NTL++A
Sbjct: 1677 VEEMRTTGIAPNVTTFNTLISA 1698
Score = 37.7 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
YDL++ LG+ K FD M +++Q+ ++ + + G +R E A+ F +M
Sbjct: 1448 YDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTE-AIDAFHKM 1506
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F V + K++N LL+ L + R + +F
Sbjct: 1507 DRFGVVKDTKAMNVLLDTLCKERSVKRARGVF 1538
>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 546
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 11/126 (8%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I + KM DE + ++ H ++P + + ++I ++ + + + DEM
Sbjct: 342 YTILINGFCKNKMVDEALNLFKEM-HQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEM 400
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLCSNLKI 165
+ V + N+L++ L G LDR LF + I +LDGLC +
Sbjct: 401 RDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTFTILLDGLCKGGR- 459
Query: 166 IMNDSQ 171
+ D+Q
Sbjct: 460 -LKDAQ 464
>gi|356516744|ref|XP_003527053.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18900-like [Glycine max]
Length = 882
Score = 43.1 bits (100), Expect = 0.039, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++ LGRA+ F + ++L Q+ D P + + +I YGRA L AL VF++M
Sbjct: 389 YTTMVGILGRAREFGAINKLLEQMVKDG-CQPNVVTYNRLIHSYGRANYLGEALNVFNQM 447
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLD-------RMKELFIS 147
+ + TL++ G LD RM+E+ +S
Sbjct: 448 QEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLS 488
Score = 38.5 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 7/118 (5%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+ + + Y +++ LG +E + + ++K + V P+E ++ +I +G+A +E A
Sbjct: 557 FKPDKVTYSIVMEVLGYCGYLEEAEAVFFEMKQNNWV-PDEPVYGLLIDLWGKAGNVEKA 615
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLK 164
+ + M + V + N+LL+A L R+ L ++NL V GL +L+
Sbjct: 616 WEWYHAMLRAGLLPNVPTCNSLLSAFL------RVHRLPDAYNLLQNMVTLGLNPSLQ 667
>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
Length = 702
Score = 43.1 bits (100), Expect = 0.039, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
NL Y++I+ L D + L+ V P+ + + ++S + L++AL +
Sbjct: 157 NLQTYNIILRSLCARGDVDRAVSLFSSLRRRG-VAPDRVTYSTLMSGLAKHDQLDNALDL 215
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF--------ISFNLKAIAV-LDGLC 160
DEMP++ VQ N LL+ G ++ +++ S NL V LDGLC
Sbjct: 216 LDEMPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLC 275
>gi|224103707|ref|XP_002313163.1| predicted protein [Populus trichocarpa]
gi|222849571|gb|EEE87118.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 43.1 bits (100), Expect = 0.039, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +IT R +++E + +K +P+++ + ++ YG++R ++ A++V EM
Sbjct: 107 YNTLITCCRRGSLYEEAAAVFEDMK-SMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREM 165
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
++ + N+L++A G L+ EL
Sbjct: 166 EVNGCSPSIVTYNSLISAYARDGLLEEAMEL 196
Score = 36.6 bits (83), Expect = 3.7, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 51 LLHYDLIITKLGRAKM-FDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
L+ Y++I+ G+ M ++++ + +K + ++P+E + +I+ R L E A V
Sbjct: 68 LITYNVILNVYGKMGMPWNKITGLFEGMK-NAGILPDEYTYNTLITCCRRGSLYEEAAAV 126
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKE 143
F++M S + NTLL+ GK R+KE
Sbjct: 127 FEDMKSMGFVPDKVTYNTLLDVY---GKSRRIKE 157
>gi|125558723|gb|EAZ04259.1| hypothetical protein OsI_26403 [Oryza sativa Indica Group]
Length = 528
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 38 DTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFY 97
+ EA +KP Y + I+ + + +L ++ H + V P+ + +I +
Sbjct: 219 EMEADGVKPSSYV---FSRILAGFRDRGEWQKAFAVLREM-HASGVRPDRHFYNVMIDTF 274
Query: 98 GRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
G+ L HA+ FD M ++ V + NTL++A G+ DR ELF
Sbjct: 275 GKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELF 322
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y ++ GR+ F E + +K D + P ++ +++ Y + L +HAL V
Sbjct: 368 NIITYTTLVDVYGRSGRFKEAVDCIEAMKADG-LKPSSTMYHALVNAYAQRGLADHALNV 426
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
M + ++ + LN+L+NA G+ R+ E F
Sbjct: 427 VKAMRADGLEASTVVLNSLINAF---GEDRRIAEAF 459
>gi|225456631|ref|XP_002266698.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74750
[Vitis vinifera]
Length = 875
Score = 43.1 bits (100), Expect = 0.040, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+++ Y ++ LGRA+ F + ++L ++ D P + + +I YGRA L A
Sbjct: 375 FKHDGHTYTTMVGILGRARQFGAINKLLAEMVRDG-CQPNVVTYNRLIHSYGRANYLNEA 433
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD 139
+ VFD M Q + TL++ G LD
Sbjct: 434 VSVFDRMQEAGCQPDRVTYCTLIDIHAKAGFLD 466
>gi|125540181|gb|EAY86576.1| hypothetical protein OsI_07956 [Oryza sativa Indica Group]
gi|125582780|gb|EAZ23711.1| hypothetical protein OsJ_07414 [Oryza sativa Japonica Group]
gi|215768726|dbj|BAH00955.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 500
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +I+T L + + F+E + H++K + P+ + + ++I+ G++ L A QV
Sbjct: 288 NVITYTMIMTSLAKCERFEEALSVSHRMK-SSGCKPDTLFYNSLINLLGKSGHLFEASQV 346
Query: 110 FD-EMPSFNVQRTVKSLNTLLNALLTCGKLD 139
F EMP V + + NT+++ G+ D
Sbjct: 347 FRVEMPMNGVSHNLATYNTMISIFCYYGRDD 377
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 41 APPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRA 100
A +R+ + ++ LG+ + D+M ++L + H ++ E + ++ G A
Sbjct: 106 AQSRDDYRHTAYACNRMVDLLGKMRQIDQMWELLSDM-HGRGLVTVETVAKSIRRLAG-A 163
Query: 101 RLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
R + + +FD++ ++R +++N LL+ L K++ +E+F
Sbjct: 164 RRWKDVVLLFDKLEDMGLERNTETMNVLLDVLCKERKIEVAREVF 208
>gi|47848296|dbj|BAD22160.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 454
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +I+T L + + F+E + H++K + P+ + + ++I+ G++ L A QV
Sbjct: 242 NVITYTMIMTSLAKCERFEEALSVSHRMK-SSGCKPDTLFYNSLINLLGKSGHLFEASQV 300
Query: 110 FD-EMPSFNVQRTVKSLNTLLNALLTCGKLD 139
F EMP V + + NT+++ G+ D
Sbjct: 301 FRVEMPMNGVSHNLATYNTMISIFCYYGRDD 331
Score = 37.4 bits (85), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 41 APPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRA 100
A +R+ + ++ LG+ + D+M ++L + H ++ E + ++ G A
Sbjct: 60 AQSRDDYRHTAYACNRMVDLLGKMRQIDQMWELLSDM-HGRGLVTVETVAKSIRRLAG-A 117
Query: 101 RLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
R + + +FD++ ++R +++N LL+ L K++ +E+F
Sbjct: 118 RRWKDVVLLFDKLEDMGLERNTETMNVLLDVLCKERKIEVAREVF 162
>gi|297599556|ref|NP_001047351.2| Os02g0601600 [Oryza sativa Japonica Group]
gi|255671066|dbj|BAF09265.2| Os02g0601600 [Oryza sativa Japonica Group]
Length = 466
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +I+T L + + F+E + H++K + P+ + + ++I+ G++ L A QV
Sbjct: 254 NVITYTMIMTSLAKCERFEEALSVSHRMK-SSGCKPDTLFYNSLINLLGKSGHLFEASQV 312
Query: 110 FD-EMPSFNVQRTVKSLNTLLNALLTCGKLD 139
F EMP V + + NT+++ G+ D
Sbjct: 313 FRVEMPMNGVSHNLATYNTMISIFCYYGRDD 343
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 41 APPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRA 100
A +R+ + ++ LG+ + D+M ++L + H ++ E + ++ G A
Sbjct: 72 AQSRDDYRHTAYACNRMVDLLGKMRQIDQMWELLSDM-HGRGLVTVETVAKSIRRLAG-A 129
Query: 101 RLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
R + + +FD++ ++R +++N LL+ L K++ +E+F
Sbjct: 130 RRWKDVVLLFDKLEDMGLERNTETMNVLLDVLCKERKIEVAREVF 174
>gi|299473436|emb|CBN77833.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1139
Score = 43.1 bits (100), Expect = 0.041, Method: Composition-based stats.
Identities = 22/99 (22%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
R ++ + +I++ G + ++ ++ + + P+ ++I+ + +A + A
Sbjct: 125 LRPTIVTFSTLISRAGACRRVRLAERFFREML-EAGITPDVQAINSLINAFAKAGSPDQA 183
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
L+VFD+M + V +V + NTL++A G +DR +++F
Sbjct: 184 LKVFDQMSRYGVTPSVITFNTLIDACGRAGDIDRARQVF 222
>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 652
Score = 43.1 bits (100), Expect = 0.041, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 53/104 (50%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+L+ ++ +I R + E ++ ++ D V P+E+ V+S + R LE ++
Sbjct: 185 DLVSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSAQLRDLELGRRL 244
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153
+ S V+ TV+ +N +++ + CG L+R K +F + K I
Sbjct: 245 HGYVESHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTI 288
>gi|302816541|ref|XP_002989949.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
gi|300142260|gb|EFJ08962.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
Length = 447
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y +II + +E ++ ++ ++ +P + F +I+ + +A +LE A+++
Sbjct: 193 NVFTYSIIINCYCKLDKVEEAWEVFMKMI-ESNCVPNAVTFNTLIAGFCKAGMLEDAIKL 251
Query: 110 FDEMPSFNVQRTVKSLNTLLNAL 132
F EM + T+ + NTL+++L
Sbjct: 252 FAEMEKIGCKATIVTYNTLIDSL 274
>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
Length = 614
Score = 43.1 bits (100), Expect = 0.041, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 1/108 (0%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +++ L + K D+ ILH+++ D P + + ++I + + A ++F+ M
Sbjct: 82 YTALLSGLWKEKRLDQALAILHEMR-DHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHM 140
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCS 161
S ++ + NTLL+ L GKL+R LF + +D CS
Sbjct: 141 KSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCS 188
>gi|302820365|ref|XP_002991850.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
gi|300140388|gb|EFJ07112.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
Length = 425
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I LGR K DE +L + P + NVI Y +A +E A+ V +M
Sbjct: 122 YAILIRSLGRCKR-DEEATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKM 180
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAV 155
N+ +LN+L+ A+ G+ + E+F +AV
Sbjct: 181 LDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAV 222
>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 577
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I +AK DE ++ ++ ++ + + +I + +AR ++A V
Sbjct: 399 NVVTYNTLINGFCKAKRIDEGVELFREMSQ-RGLVGNTVTYTTLIHGFFQARDCDNAQMV 457
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F +M S V + + NTLL+ L GKL++ +F
Sbjct: 458 FKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVF 493
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N + Y +I +A+ D Q + Q+ D V P + + ++ + LE A+ V
Sbjct: 434 NTVTYTTLIHGFFQARDCDNAQMVFKQMVSDG-VHPNIMTYNTLLDGLCKNGKLEKAMVV 492
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153
F+ + ++ T+ + N ++ + GK++ +LF S +LK +
Sbjct: 493 FEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGV 536
>gi|387191507|gb|AFJ68617.1| pentatricopeptide repeat-containing protein, partial
[Nannochloropsis gaditana CCMP526]
Length = 646
Score = 43.1 bits (100), Expect = 0.041, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEI-IFCNVISFYGRARLLEHALQVFDE 112
Y ++ G+A ++M++++ Q+ R P ++ F VI YGRA L AL++
Sbjct: 514 YTTLMELYGQAGNKEQMEELVQQMSR-KRGFPRDVRAFTAVIRAYGRAGLWREALELLGT 572
Query: 113 MPSFNVQRTVKSLNTLLNALLTCGK 137
M + NV+ TV S T + AL G+
Sbjct: 573 MKARNVKPTVVSYGTAMAALAASGR 597
>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
Length = 668
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+ + Y ++ L RA+ +++ +++L ++ + P E+ F I + L+E A+ +
Sbjct: 351 DTISYTTVLKGLCRAERWNDAKELLKEMVRNN-CPPNEVTFNTFICILCQKGLIEQAIML 409
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA-----IAVLDGLCS 161
++M V + N L+N G +D ELF S K +L GLC+
Sbjct: 410 IEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCKPNTITYTTLLTGLCN 466
Score = 42.4 bits (98), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+ + Y ++ L +K +D+++++ ++ + +P E+ F +I F+ R ++E A+QV
Sbjct: 246 DTVSYTTLLKGLCASKRWDDVEELFAEMM-EKNCMPNEVTFDMLIRFFCRGGMVERAIQV 304
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLD 139
+M N ++N++ G++D
Sbjct: 305 LQQMTEHECATNTTLCNIVINSICKQGRVD 334
>gi|357162065|ref|XP_003579293.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Brachypodium distachyon]
Length = 858
Score = 43.1 bits (100), Expect = 0.042, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRM 141
R+ P+ F +++S RA LE A +FDEM + R + + NT ++A+ CG ++
Sbjct: 299 RLCPDRKTFNSLLSACSRAGHLEDARALFDEMIHLGIGRDIYTYNTFIDAICKCGNIELA 358
Query: 142 KELFISFNLKAI 153
++ + K +
Sbjct: 359 MQVLLDMEAKNV 370
Score = 36.2 bits (82), Expect = 5.8, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 38 DTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFY 97
D EA +KP N++ Y +I + + +DE ++ ++K + + + + V++ Y
Sbjct: 364 DMEAKNVKP---NVVTYSTLIDGYSKLEKYDEALKLYEKMK-SLGIQLDRVCYNTVLAIY 419
Query: 98 GRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA 154
+A V DEM +++ + N+L+N G+LD + L + +A
Sbjct: 420 VKAGKYGEIAIVCDEMEDSGIEKDTVTYNSLINGYGKQGRLDIVSFLVQDMRRRGVA 476
>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Vitis vinifera]
Length = 798
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 19/154 (12%)
Query: 19 QKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLK 78
Q+ P+L + F + FR + H +L+I L + FD +IL +LK
Sbjct: 74 QRRPELGFRFF---------IWTTRRRSFRSWVTH-NLVIDMLAKDDGFDTYWKILEELK 123
Query: 79 HDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA------- 131
+ IP F +I+ Y ++ + E A++ F +M F + V + N++L+
Sbjct: 124 NSNIQIPPP-TFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVF 182
Query: 132 LLTCGKLDRMKELFISFNLKAIAV-LDGLCSNLK 164
LL ++M +L + N + L+GLC N K
Sbjct: 183 LLALAVYNQMLKLNYNPNRATFVILLNGLCKNGK 216
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L RAK +DE+Q+ ++ + P+ +++ +I + ++++AL + ++M
Sbjct: 309 YSSLIDGLFRAKRYDEVQEWCRKM-FKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDM 367
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
+ N L+ G LD+ + L
Sbjct: 368 TQRGLSPDTYCYNALIKGFCDVGLLDKARSL 398
>gi|401426963|ref|XP_003877965.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322494212|emb|CBZ29509.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 801
Score = 43.1 bits (100), Expect = 0.043, Method: Composition-based stats.
Identities = 23/107 (21%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
R N+ Y L+ R+ +++ + QL+ +++PE ++ ++ + R + A
Sbjct: 130 RPNMESYILLFRACERSSLYNRAFVLYQQLREQFQLVPETAVYNTLLGYCAAVRDVAQAT 189
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF---ISFNLK 151
+ +EM NV R V + N L++ ++ + ++F + NLK
Sbjct: 190 FLVEEMKQLNVSRDVNTYNCLMSVMMESAPYEETLKVFQELLYLNLK 236
>gi|414591622|tpg|DAA42193.1| TPA: hypothetical protein ZEAMMB73_663178 [Zea mays]
Length = 564
Score = 43.1 bits (100), Expect = 0.043, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 27/53 (50%)
Query: 93 VISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+I YG+A + HAL+ F EM + RT KSLN + LL D LF
Sbjct: 363 IIGLYGKAGMPGHALRTFQEMGMYGCPRTAKSLNATMKVLLRARMFDEALSLF 415
>gi|356562139|ref|XP_003549331.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 689
Score = 43.1 bits (100), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
+ N++ Y+ ++ +GRAK + + I ++ ++ +P + +++ YGR R E AL
Sbjct: 303 KSNMVIYNTLLDAMGRAKRPWQAKSIYTEMTNNG-FLPNWATYASLLRAYGRGRYSEDAL 361
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGL 159
V+ EM ++ NTLL G D ++F A + D
Sbjct: 362 FVYKEMKEKGMEMNTHLYNTLLAMCADLGLADDAFKIFEDMKSSATCLCDSW 413
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLL 103
++P R +L Y++ + ++K D M+++ ++ V P+ + F +IS L
Sbjct: 160 IRPTREVIL-YNVTLKVFRKSKDLDAMEKLFDEMLQ-RGVRPDNVSFSTIISCARICSLP 217
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
A++ F++MPSF + + + +++A G +D L+
Sbjct: 218 NKAVEWFEKMPSFRCEPDDVTYSAMIDAYGRAGNIDMALRLY 259
>gi|449530988|ref|XP_004172473.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like [Cucumis sativus]
Length = 347
Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 10/123 (8%)
Query: 46 PFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEH 105
P N++ Y++ IT L ++K D++++IL L P+ +C++I +
Sbjct: 147 PMSNNIV-YNIAITGLCKSKNIDDVRRILSDLLLKG-FCPDNYTYCSLIHACSAVGKVNE 204
Query: 106 ALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA--------VLD 157
A + D+M + + + N L+N L G LDR + LF K ++ ++D
Sbjct: 205 AFCLRDDMINAGLVPNIVVYNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTYNTLID 264
Query: 158 GLC 160
G C
Sbjct: 265 GYC 267
>gi|307103654|gb|EFN51912.1| hypothetical protein CHLNCDRAFT_59068 [Chlorella variabilis]
Length = 1025
Score = 43.1 bits (100), Expect = 0.044, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 11/114 (9%)
Query: 23 KLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR 82
+LAL+LF+ + TE R N++ Y+ +I + +++ Q++ Q++H
Sbjct: 387 ELALELFREMH-----TEG-----CRPNVVTYNSLIAACAQGAQWEKAQEMFEQMQHRG- 435
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCG 136
P+ + F +I+ Y RA AL F++M + N + NT++ AL G
Sbjct: 436 CKPDAVTFGGLIAAYDRAGHWRRALTAFEQMKAHNCRPDSVVYNTIVGALWKTG 489
Score = 37.4 bits (85), Expect = 2.3, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
P + +IS YG+ L+ ALQ+F +M +R V + ++L++A G+ + EL
Sbjct: 333 PTATTYTALISAYGKNGQLDRALQIFQDMVRRGCERNVITYSSLISACEKAGRWELALEL 392
Query: 145 F 145
F
Sbjct: 393 F 393
>gi|302758166|ref|XP_002962506.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
gi|300169367|gb|EFJ35969.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
Length = 807
Score = 43.1 bits (100), Expect = 0.044, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 8/122 (6%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F ++ YD++I L RAK E + +L L+++ P + + +I + +A + A
Sbjct: 323 FVPDIFTYDILIAGLCRAKRLSEARDLLGTLRNEDDCTPNVVSYNTLIDGFSKAARVNDA 382
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDG 158
Q+F EM + V + +TL+ L G+ K I +V+ G
Sbjct: 383 YQLFLEMVTAGQHPDVVTYSTLIRGLCNAGRASEAHSYLEEMVGKKILPKVPVYSSVISG 442
Query: 159 LC 160
LC
Sbjct: 443 LC 444
>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 819
Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLL 103
L F +++ Y+ +I+ R M DE ++ +Q+ + P+ + ++S + RA +
Sbjct: 342 LNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMA-EKGTKPDVFTYTTLLSGFERAGKV 400
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA 154
E A+ +F+EM + + + + N + GK M ++F N+ ++
Sbjct: 401 ESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLS 451
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ ++ ++ G+ M E+ + ++K +PE F +IS Y R E A+ V
Sbjct: 453 DIVTWNTLLAVFGQNGMDSEVSGVFKEMKR-AGFVPERETFNTLISAYSRCGSFEQAMTV 511
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLC 160
+ M V + + NT+L AL G ++ +++ DG C
Sbjct: 512 YRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEME-------DGRC 555
Score = 39.7 bits (91), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+L Y+ ++ L R M+++ +++L +++ D R P E+ +C+++ Y + + +
Sbjct: 523 DLSTYNTVLAALARGGMWEQSEKVLAEME-DGRCKPNELTYCSLLHAYANGKEIGLMHSL 581
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN 149
+E+ S ++ L TL +L C K D + E +F+
Sbjct: 582 AEEVYSGVIEPRAVLLKTL---VLVCSKCDLLPEAERAFS 618
Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F ++ + Y+ ++ G++ E ++L++++ + P + + ++IS Y R +L+ A
Sbjct: 310 FSHDKVTYNALLDVYGKSHRPKEAMKVLNEMELNG-FSPSIVTYNSLISAYARDGMLDEA 368
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+++ ++M + V + TLL+ GK++ +F
Sbjct: 369 MELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIF 407
>gi|224093190|ref|XP_002309826.1| predicted protein [Populus trichocarpa]
gi|222852729|gb|EEE90276.1| predicted protein [Populus trichocarpa]
Length = 1480
Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 13/125 (10%)
Query: 22 PKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLK-HD 80
P LA++L N+ L+P + + Y+ +I+ RA +E ++ ++ H
Sbjct: 307 PNLAIELL-------NEVRRSGLRP---DTITYNTLISACSRASNLEEAAKVFDDMEAHH 356
Query: 81 TRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDR 140
+ P+ + +IS YGR L A Q+F+++ S S N+LL A G +++
Sbjct: 357 CQ--PDLWTYNAMISVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSLLYAFAREGNVEK 414
Query: 141 MKELF 145
+KE++
Sbjct: 415 VKEIW 419
>gi|407847375|gb|EKG03100.1| hypothetical protein TCSYLVIO_005851 [Trypanosoma cruzi]
Length = 1041
Score = 43.1 bits (100), Expect = 0.045, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 61/105 (58%), Gaps = 4/105 (3%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP-EEIIFCNVISFYGRARLLEH 105
F+ N + ++++ GRAK ++ +++++ + + ++ IP EE + +++ Y RAR++E
Sbjct: 781 FQENHVTFNILFEGYGRAKRYEHIKELVEERR--SKQIPMEEFGYMGLLNIYSRARMVEE 838
Query: 106 ALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNL 150
++ +EM + V T + L+ + ++ G + +M E +IS L
Sbjct: 839 TSKLVEEMVASGVPFTSRMLSAVASSFSHIGDIPKM-EHYISLLL 882
>gi|302785562|ref|XP_002974552.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
gi|300157447|gb|EFJ24072.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
Length = 495
Score = 43.1 bits (100), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQL---KHDTRVIPEEIIFCNVISFYGRARLLEHA 106
+LL Y+ ++ RA ++ +L ++ K + V+P+ + VIS + +AR L A
Sbjct: 175 SLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTA 234
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
V M V + NTLL+ L GKLD +F
Sbjct: 235 RYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMF 273
>gi|108711050|gb|ABF98845.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|215693326|dbj|BAG88708.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222625789|gb|EEE59921.1| hypothetical protein OsJ_12549 [Oryza sativa Japonica Group]
Length = 554
Score = 43.1 bits (100), Expect = 0.045, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +++ LG+A E +LK D V P+ + ++I GRA LE A V
Sbjct: 339 NVVTYTILMHALGKAGRTREALDTFDKLKEDG-VAPDASFYNSLIYILGRAGRLEDAYSV 397
Query: 110 FDEMPSFNVQRTVKSLNTLLNA 131
+EM + + V + NTL++A
Sbjct: 398 VEEMRTTGIAPNVTTFNTLISA 419
Score = 37.7 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
YDL++ LG+ K FD M +++Q+ ++ + + G +R E A+ F +M
Sbjct: 169 YDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTE-AIDAFHKM 227
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F V + K++N LL+ L + R + +F
Sbjct: 228 DRFGVVKDTKAMNVLLDTLCKERSVKRARGVF 259
>gi|302805448|ref|XP_002984475.1| hypothetical protein SELMODRAFT_180944 [Selaginella moellendorffii]
gi|300147863|gb|EFJ14525.1| hypothetical protein SELMODRAFT_180944 [Selaginella moellendorffii]
Length = 592
Score = 43.1 bits (100), Expect = 0.045, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 42/80 (52%)
Query: 77 LKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCG 136
++ T + P+ IF + ++ R + LE L++ +++ +++ V N L+ CG
Sbjct: 105 VRSSTEIQPDAFIFSSALAACARLKCLEQGLEIHEQIVKRGIKQDVGLQNALVTMYAKCG 164
Query: 137 KLDRMKELFISFNLKAIAVL 156
++DR K++F + + V+
Sbjct: 165 RIDRAKQVFDRITHRDVVVI 184
>gi|255660944|gb|ACU25641.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
Length = 481
Score = 43.1 bits (100), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
++LH K+ + ALQ F+ E L F +N + II LGRA + + I
Sbjct: 17 NVLHGAKNSEHALQFFRW-------VERSNL--FXHNRETHLKIIEILGRASKLNHARCI 67
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L + E++ + +I YG+A +++ ++++F +M V RT+KS + L +L
Sbjct: 68 LLDMPKKGLEWDEDL-WVLMIDSYGKAGIVQESVKMFQKMEELGVXRTIKSYDALFKVIL 126
Query: 134 TCGKLDRMKELF 145
G+ K F
Sbjct: 127 RRGRYMMAKRYF 138
>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Brachypodium distachyon]
Length = 787
Score = 43.1 bits (100), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I L R E L++L + ++P++ + +I Y + LE+A Q ++M
Sbjct: 523 YNTLIKGLSRMGRLKEAIDKLNELM-EKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKM 581
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF 148
+ + V + NTL+N L GKLD+ +LF S+
Sbjct: 582 VENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESW 616
Score = 39.7 bits (91), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 57 IITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSF 116
++ L + K ++E Q +L Q +P+E+ + V++ Y + E AL+++DEM
Sbjct: 456 VLYNLCKEKRYEEAQGLL-QSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEK 514
Query: 117 NVQRTVKSLNTLLNALLTCGKL----DRMKELF 145
+ ++ + NTL+ L G+L D++ EL
Sbjct: 515 KLTPSISTYNTLIKGLSRMGRLKEAIDKLNELM 547
>gi|302759663|ref|XP_002963254.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
gi|300168522|gb|EFJ35125.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
Length = 495
Score = 43.1 bits (100), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQL---KHDTRVIPEEIIFCNVISFYGRARLLEHA 106
+LL Y+ ++ RA ++ +L ++ K + V+P+ + VIS + +AR L A
Sbjct: 175 SLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTA 234
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
V M V + NTLL+ L GKLD +F
Sbjct: 235 RYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMF 273
>gi|297794613|ref|XP_002865191.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311026|gb|EFH41450.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 697
Score = 43.1 bits (100), Expect = 0.047, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 65 KMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKS 124
+ DE +++ Q+ P ++ +IS Y R+ L AL +FDEMP R V S
Sbjct: 49 RRLDEAREVFDQVPS-----PHVSLYTKMISGYTRSNRLVDALNLFDEMP----LRDVVS 99
Query: 125 LNTLLNALLTCGKLDRMKELF 145
N++++ + CG +D ++F
Sbjct: 100 WNSMISGCVECGDIDTAVKMF 120
>gi|302813971|ref|XP_002988670.1| hypothetical protein SELMODRAFT_128601 [Selaginella moellendorffii]
gi|300143491|gb|EFJ10181.1| hypothetical protein SELMODRAFT_128601 [Selaginella moellendorffii]
Length = 318
Score = 43.1 bits (100), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 40 EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR 99
EA L P ++ Y I++ L +A +M + + ++P+ + + +I YGR
Sbjct: 36 EADQLSP---DVGTYHYIVSGLCKANK-TKMAAMYFEGMKKLGLLPDTMTYSTMIDCYGR 91
Query: 100 ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGK 137
A + ALQ+F+EM NV+ + N+LL A+ T K
Sbjct: 92 AGKVNRALQLFEEMKRKNVRLDTRVFNSLLRAVGTSYK 129
>gi|297734042|emb|CBI15289.3| unnamed protein product [Vitis vinifera]
Length = 793
Score = 43.1 bits (100), Expect = 0.047, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+++ Y ++ LGRA+ F + ++L ++ D P + + +I YGRA L A
Sbjct: 384 FKHDGHTYTTMVGILGRARQFGAINKLLAEMVRDG-CQPNVVTYNRLIHSYGRANYLNEA 442
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD 139
+ VFD M Q + TL++ G LD
Sbjct: 443 VSVFDRMQEAGCQPDRVTYCTLIDIHAKAGFLD 475
>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Vitis vinifera]
Length = 718
Score = 43.1 bits (100), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 49 YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQ 108
YN Y L KLGR M D MQQ+ L ++ ++P+ + + +I Y R L A
Sbjct: 342 YNSFIYGL--CKLGR--MSDAMQQLSDMLANN--LLPDVVSYNTLIYGYCRLGNLMKAFL 395
Query: 109 VFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA 154
+FDE+ S + T+ + NTLL+ L G+L+ ++L + + IA
Sbjct: 396 LFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIA 441
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
K F +L+ Y++++ L + +E ++L ++ D VIP+ + + ++I + L
Sbjct: 508 KGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDG-VIPDYVTYTSIIHAHLENGRLR 566
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVL 156
++F EM S + +V + L++ G+L+R F K I +++
Sbjct: 567 KGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLI 626
Query: 157 DGLC 160
+GLC
Sbjct: 627 NGLC 630
>gi|225432738|ref|XP_002279088.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial [Vitis vinifera]
Length = 535
Score = 43.1 bits (100), Expect = 0.048, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
+R+++ Y+ ++ LG+ K FD M +++ ++ + + V+ RA + A
Sbjct: 149 YRHSMNSYNSMVDILGKLKKFDLMWELVEEMDRLGGYVSLATM-TKVMRRLARASRWKDA 207
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF 148
++ F M F V++ ++NTL++AL+ ++ ++F+ F
Sbjct: 208 IEAFRGMERFGVKKDTLAMNTLMDALVKENSVEHANDVFVEF 249
Score = 35.4 bits (80), Expect = 7.8, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Query: 29 FKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEI 88
F+ N N+ E P N++ Y +++ LG+ K + ++ ++K + +P+
Sbjct: 308 FRKVNSVLNEMEEKGCPP---NVVTYTIVMHALGKGKEISKALEVYEKMK-GSSCVPDTS 363
Query: 89 IFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA 131
+ ++I +A L+ A VF++M V + NT+++A
Sbjct: 364 FYSSLIYILSKAGRLKDARDVFEDMTKQGAIPDVLTYNTMISA 406
>gi|302795973|ref|XP_002979749.1| hypothetical protein SELMODRAFT_111428 [Selaginella moellendorffii]
gi|300152509|gb|EFJ19151.1| hypothetical protein SELMODRAFT_111428 [Selaginella moellendorffii]
Length = 388
Score = 43.1 bits (100), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 43/177 (24%)
Query: 25 ALQLFKN--PNPNA--------------NDTEAPPL--------KPFRYNLLHYDLIITK 60
ALQL + P PN DTEA L PF ++ Y+ +I
Sbjct: 137 ALQLMREMEPAPNTITYNTVINGLWRSRKDTEAQALLDEMISVGCPF--SVSTYNCVIAN 194
Query: 61 LGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR 120
L R++ ++ + ++ + +E+ F ++ + R + LE A D M +
Sbjct: 195 LCRSREMEKAVDVFLYMRK-KKCEADEVTFATLVDGFLRDKRLEDAGGTLDWMARAGIPS 253
Query: 121 TVKSLNTLLNALLTCGKLDRMKELF------------ISFNLKAIAVLDGLCSNLKI 165
VKS LLNAL G + E+F +S+N+ +L GLC L++
Sbjct: 254 DVKSYTKLLNALCDRGSAQKACEIFNLMVDRGYAPTLVSYNV----LLKGLCKALRV 306
>gi|115455297|ref|NP_001051249.1| Os03g0746400 [Oryza sativa Japonica Group]
gi|113549720|dbj|BAF13163.1| Os03g0746400, partial [Oryza sativa Japonica Group]
Length = 613
Score = 43.1 bits (100), Expect = 0.048, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +++ LG+A E +LK D V P+ + ++I GRA LE A V
Sbjct: 398 NVVTYTILMHALGKAGRTREALDTFDKLKEDG-VAPDASFYNSLIYILGRAGRLEDAYSV 456
Query: 110 FDEMPSFNVQRTVKSLNTLLNA 131
+EM + + V + NTL++A
Sbjct: 457 VEEMRTTGIAPNVTTFNTLISA 478
Score = 37.7 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
YDL++ LG+ K FD M +++Q+ ++ + + G +R E A+ F +M
Sbjct: 228 YDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTE-AIDAFHKM 286
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F V + K++N LL+ L + R + +F
Sbjct: 287 DRFGVVKDTKAMNVLLDTLCKERSVKRARGVF 318
>gi|404357981|gb|AFR63983.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
Length = 187
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 70 MQQILHQLKHDTRVIPEEI-----IFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKS 124
M L RV E + + +V++ Y +A + HA ++FDEMP +R V S
Sbjct: 10 MYSSCGDLSSALRVFDESVSKDLPAWNSVVNAYAKAGSINHARKLFDEMP----ERNVIS 65
Query: 125 LNTLLNALLTCGKLDRMKELF 145
+ L+N + CGK +LF
Sbjct: 66 WSCLINGYVMCGKYKEALDLF 86
>gi|255660950|gb|ACU25644.1| pentatricopeptide repeat-containing protein [Casselia glaziovii]
Length = 481
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 20/137 (14%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDL-----IITKLGRAKMFD 68
++LH K + ALQ F+ R NL +D II LGRA +
Sbjct: 17 NVLHGAKKTEHALQFFRWVE--------------RSNLFQHDRETHLKIIEILGRASKLN 62
Query: 69 EMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTL 128
+ IL + E++ + +I YG+ +++ ++++F +M V+RT+KS + L
Sbjct: 63 HARCILLDMPKKGLEWDEDL-WVLMIDSYGKKGIVQESVKLFQKMEELGVERTIKSYDAL 121
Query: 129 LNALLTCGKLDRMKELF 145
+L G+ K F
Sbjct: 122 FKVILRRGRFMMAKRYF 138
Score = 38.9 bits (89), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD--- 139
+ P+ I + +I+ Y R + +E A + F EM N++ TV + TL+ ++ ++D
Sbjct: 181 ITPDVITYNTLINGYYRVKKMEEAERYFVEMKGRNIEPTVITYTTLIKGYVSVDRVDDAL 240
Query: 140 RMKELFISFNLKAIAV-----LDGLCSNLKIIMNDSQ 171
+ E F +K A+ L GLC+ K M+++Q
Sbjct: 241 SLMEEMKGFGIKPNAITYSTLLPGLCNAEK--MSEAQ 275
>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
mitochondrial [Vitis vinifera]
Length = 676
Score = 42.7 bits (99), Expect = 0.049, Method: Composition-based stats.
Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 36/149 (24%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
++ Y +IT R + DE + + D P+ ++ +I+ Y R +HAL
Sbjct: 8 KFCTFSYQSMITDHLRNQRIDEARTVF-----DKVSFPDVYLYTMMITGYARNYRFDHAL 62
Query: 108 QVFDEMPSFNV---------------------------QRTVKSLNTLLNALLTCGKLDR 140
Q+F EMP +V +R+V S T++N L GK++
Sbjct: 63 QLFYEMPVKDVVSWNSMIKGCFDCADLTMARKLFDEMPERSVVSWTTMINGFLQFGKIEV 122
Query: 141 MKELFISFNLKAIAVLD----GLCSNLKI 165
+ LF + IA + G C N ++
Sbjct: 123 AEGLFYKMPFRDIAAWNSMIYGYCCNGRV 151
>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
Length = 1078
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 49 YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQ 108
YN Y L KLGR M D MQQ+ L ++ ++P+ + + +I Y R L A
Sbjct: 342 YNSFIYGL--CKLGR--MSDAMQQLSDMLANN--LLPDVVSYNTLIYGYCRLGNLMKAFL 395
Query: 109 VFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA 154
+FDE+ S + T+ + NTLL+ L G+L+ ++L + + IA
Sbjct: 396 LFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIA 441
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
K F +L+ Y++++ L + +E ++L ++ D VIP+ + + ++I + L
Sbjct: 508 KGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDG-VIPDYVTYTSIIHAHLENGRLR 566
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVL 156
++F EM S + +V + L++ G+L+R F K I +++
Sbjct: 567 KGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLI 626
Query: 157 DGLC 160
+GLC
Sbjct: 627 NGLC 630
>gi|15237467|ref|NP_199470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180372|sp|Q9LS25.1|PP420_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g46580, chloroplastic; Flags: Precursor
gi|8885599|dbj|BAA97529.1| unnamed protein product [Arabidopsis thaliana]
gi|332008017|gb|AED95400.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 711
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 58/126 (46%), Gaps = 6/126 (4%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
K + + + Y+ ++ + +E +++ + +K + P+ + +++ YG E
Sbjct: 390 KKWPMDFILYNTLLNMCADIGLEEEAERLFNDMKESVQCRPDNFSYTAMLNIYGSGGKAE 449
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNL---KAIAVLDGLCS 161
A+++F+EM VQ V L+ L GK R+ ++ F+L + + D LC
Sbjct: 450 KAMELFEEMLKAGVQVNVMGCTCLVQCL---GKAKRIDDVVYVFDLSIKRGVKPDDRLCG 506
Query: 162 NLKIIM 167
L +M
Sbjct: 507 CLLSVM 512
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ ++ +GRA + + +++ + + P E ++ YG+AR ALQ+
Sbjct: 325 NVVVYNTLLEAMGRAGKPGLARSLFNEM-LEAGLTPNEKTLTALVKIYGKARWARDALQL 383
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
++EM + NTLLN G + + LF
Sbjct: 384 WEEMKAKKWPMDFILYNTLLNMCADIGLEEEAERLF 419
>gi|110740599|dbj|BAE98404.1| hypothetical protein [Arabidopsis thaliana]
Length = 546
Score = 42.7 bits (99), Expect = 0.050, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y+ +I G+AK+F E + ++ ++ ++ V+P + + ++S Y AL V
Sbjct: 127 DLVAYNSMINVYGKAKLFREARLLIKEM-NEAGVLPNTVSYSTLLSVYVENHKFLEALSV 185
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKE 143
F EM N + + N +++ G+LD +KE
Sbjct: 186 FAEMKEVNCALDLTTCNIMIDVY---GQLDMVKE 216
Score = 38.9 bits (89), Expect = 0.91, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ I+ G A++F E L +L + + + +I YG+ E A +
Sbjct: 232 NVVSYNTILRVYGEAELFGEAIH-LFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNL 290
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
EM S ++ + +T+++ GKLDR LF
Sbjct: 291 VQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLF 326
Score = 36.6 bits (83), Expect = 4.3, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLL 103
L P RY Y +IT G+ MFD L +++ D RV + +++ N+I R
Sbjct: 54 LAPDRYT---YSTLITSFGKEGMFDSALSWLQKMEQD-RVSGDLVLYSNLIELSRRLCDY 109
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLN 130
A+ +F + + + + N+++N
Sbjct: 110 SKAISIFSRLKRSGITPDLVAYNSMIN 136
>gi|356528509|ref|XP_003532845.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
chloroplastic-like [Glycine max]
Length = 580
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+L+ ++L+I G+ + F +M+Q+ L H ++ P F ++I YG+ARL + A V
Sbjct: 316 DLITFNLLIDSYGKKQAFGKMEQVFKSLLH-SKERPSLPTFNSMILNYGKARLKDKAEDV 374
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F +M + + +++ C + R +LF
Sbjct: 375 FKKMTDMGYTLSFVTHESMIYMYGFCDCVSRAAQLF 410
>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic [Vitis vinifera]
Length = 772
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 85 PEEIIFCNVI-SFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKE 143
P+E + +I S R RL E AL + EM S R V + NTL++ +++ +E
Sbjct: 454 PDEFTYNMLIDSLCSRGRL-EEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEE 512
Query: 144 LFISFNLKAIA--------VLDGLCSNLKI 165
+F L+ I+ ++DGLC N ++
Sbjct: 513 IFDEMELQGISRNVVTYNTLIDGLCKNRRV 542
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ ++ KLG+ F M+++L ++KH T F +I Y + L + A+ V D M
Sbjct: 108 YEEVLRKLGKDGSFGSMRRVLQEMKH-TGCEIRRGTFLILIESYAKFELFDEAVAVVDIM 166
Query: 114 -PSFNVQRTVKSLNTLLNALLTCGKL 138
F ++ + N LLN L+ KL
Sbjct: 167 EEEFGLKLDAFTYNFLLNVLVDGNKL 192
>gi|356506793|ref|XP_003522160.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At4g17915-like [Glycine max]
Length = 461
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I R D +L ++ HD + P+ + F +IS R L +L +
Sbjct: 47 DVVTYNTLIDAYCRFATLDVAYSVLARM-HDAGIPPDVVSFNTLISGAVRKSLFSKSLDL 105
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA-------VLDGLCSN 162
FDEM + S N L+N L GK D +F L+ +++GLC N
Sbjct: 106 FDEMLKRGINPDAWSHNILMNCLFQLGKPDEANRVFKEIVLRDEVHPATYNIMINGLCKN 165
Score = 39.3 bits (90), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 9/119 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N + Y ++T R ++F+E +IL +++ + +C VI+ + ++ A ++
Sbjct: 221 NAVTYTTVMTCCFRCRLFEEGLEILSEMR-SLGFTFDGFAYCTVIAAMIKTGRMQEAEEI 279
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA--------VLDGLC 160
+ M S V+ + S NTL+N G+LD L + + ++DGLC
Sbjct: 280 VEMMVSSGVRPDLVSYNTLINLYCRQGRLDDALRLLDEIEGEGLECDQYTHTIIVDGLC 338
>gi|255547019|ref|XP_002514567.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546171|gb|EEF47673.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 515
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
PE ++ N+++ YG+ + +A +FD MP QR S NT+L+A G L +MKE+
Sbjct: 41 PEPFLYNNLMNAYGKLGNIAYARHLFDGMP----QRNSFSWNTILSAYSKSGHLPKMKEI 96
Query: 145 F 145
F
Sbjct: 97 F 97
>gi|147819071|emb|CAN69810.1| hypothetical protein VITISV_043106 [Vitis vinifera]
Length = 847
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 49 YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQ 108
YN Y L KLGR M D MQQ+ L ++ ++P+ + + +I Y R L A
Sbjct: 648 YNSFIYGL--CKLGR--MSDAMQQLSDMLANN--LLPDVVSYNTLIYGYCRLGNLMKAFL 701
Query: 109 VFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA 154
+FDE+ S + T+ + NTLL+ L G+L+ ++L + + IA
Sbjct: 702 LFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIA 747
>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
gi|224030695|gb|ACN34423.1| unknown [Zea mays]
gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
Length = 756
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 11/144 (7%)
Query: 11 RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEM 70
RL + L Q P+ ALQ+ + A + F + Y+ II KLG A FD M
Sbjct: 58 RLLTALREQADPEAALQMLNS---------ALAREDFAPSRAVYEEIIQKLGTAGAFDLM 108
Query: 71 QQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQ-VFDEMPSFNVQRTVKSLNTLL 129
+ ++ +++ + ++ V S Y R R + A+ V +++ +F VQ N LL
Sbjct: 109 EGLVREMRREGHEAGAGVVRSFVES-YARLRRFDDAVDLVRNQLNTFGVQADTAVYNHLL 167
Query: 130 NALLTCGKLDRMKELFISFNLKAI 153
N L ++ ++ ++ + I
Sbjct: 168 NVLAEGSRMKLLESVYNEMTDRGI 191
>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
Length = 649
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ + +I R D L ++K ++P+ +I+ VI + RA + AL+V
Sbjct: 296 DVVSFSCLIGLFSRRGEMDHAGAYLREMK-GLGLVPDGVIYTMVIGGFCRAGSMSEALRV 354
Query: 110 FDEMPSFNVQRTVKSLNTLLNAL 132
DEM F V + NTLLN L
Sbjct: 355 RDEMVGFGCLPDVVTYNTLLNGL 377
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ ++ L + + +++L++++ + V P+ F +I Y R E+ALQ+
Sbjct: 366 DVVTYNTLLNGLCKQHRLLDAEKLLNEME-ERGVTPDLCTFTTLIHGYCRQGNFENALQL 424
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153
FD + ++ V + N+L++ + G L + EL+ + + I
Sbjct: 425 FDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREI 468
>gi|401429618|ref|XP_003879291.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495541|emb|CBZ30846.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 1050
Score = 42.7 bits (99), Expect = 0.053, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 4/104 (3%)
Query: 40 EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP-EEIIFCNVISFYG 98
E L+ F+ N + Y+++ GRAK F+ + +++ + K R IP EE + +++ Y
Sbjct: 769 EKLKLEGFQENAVTYNILFEGYGRAKRFEHLLELVEERK--ARGIPMEEFGYVVLLNTYA 826
Query: 99 RARLLEHALQVFDEMPS-FNVQRTVKSLNTLLNALLTCGKLDRM 141
RAR+ A + DEM S NV + + L T+ + G +++M
Sbjct: 827 RARMPTEAEALVDEMVSGSNVVLSSRLLATVASTFSHIGNVEQM 870
>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
Length = 794
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F N L Y+L + K ++E +++L +P+E+ + V++ Y + E A
Sbjct: 457 FTLNTLLYNLC-----KEKRYEEAEELLRSPPQRG-FVPDEVSYGTVMAAYFKENKPEPA 510
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKL----DRMKELF 145
L ++DEM + ++ + NTL+ L T GKL D++ EL
Sbjct: 511 LYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELM 553
>gi|356539840|ref|XP_003538401.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Glycine max]
Length = 486
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 11/116 (9%)
Query: 22 PKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT 81
P +++ F+ + ND P ++L++ LGR + FD M + + +
Sbjct: 85 PGQSVKFFRWSGRHLNDNHTP---------YSWNLVVDILGRNRFFDPMWDAVKSMNKEG 135
Query: 82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGK 137
+ F +V S Y A + A+ F+ M ++ R +LN+LL+A+ + G+
Sbjct: 136 --LLSLATFASVFSSYVAADRIREAIMAFEIMDNYGCVRDAFALNSLLSAICSNGR 189
>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 834
Score = 42.7 bits (99), Expect = 0.053, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 64/126 (50%), Gaps = 11/126 (8%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I+ L + KM DE + ++++ VIP+ + + ++I ++ + AL+ DEM
Sbjct: 332 YSVMISGLSKMKMLDEAMDLFEGMRNEN-VIPDVVAYSSLIDGLCKSGRINSALKYVDEM 390
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLD-------RMKELFISFNLKAIAVL-DGLCSNLKI 165
V + +L++AL ++D ++K+ I N+ +L DGLC + +
Sbjct: 391 HDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDGR- 449
Query: 166 IMNDSQ 171
+ D+Q
Sbjct: 450 -LTDAQ 454
>gi|255570807|ref|XP_002526356.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534315|gb|EEF36027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 415
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 60 KLGRAKMFDEMQQILHQ---LKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM--- 113
KLG AKM+ EM +++Q + H I E ++ +I F+ AR L A+ +F M
Sbjct: 134 KLGAAKMYQEMDDVVNQVLAVPH----IGNEALYNTIIYFFTEARKLTRAVNIFKHMRNS 189
Query: 114 PSFNVQRTVKSLNTLLNALLTCGK 137
+ + + ++++ N+L A+L+ G+
Sbjct: 190 RNLDYRPSIRTYNSLFTAMLSRGR 213
>gi|413953460|gb|AFW86109.1| hypothetical protein ZEAMMB73_051838 [Zea mays]
Length = 240
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I LG+AK +D ++ +LK + + + +I G+A L+ A+ +FDEM
Sbjct: 49 YCSLIDALGKAKRYDLACELFQELKENCGSSSARV-YAVMIKHLGKAGRLDDAINMFDEM 107
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDR 140
V + N L++ L G +D
Sbjct: 108 NKLGCAPDVYAYNALMSGLARTGMIDE 134
>gi|404357715|gb|AFR63850.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357717|gb|AFR63851.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357719|gb|AFR63852.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357721|gb|AFR63853.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357723|gb|AFR63854.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357725|gb|AFR63855.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357727|gb|AFR63856.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357729|gb|AFR63857.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357731|gb|AFR63858.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357733|gb|AFR63859.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357735|gb|AFR63860.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357737|gb|AFR63861.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357739|gb|AFR63862.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357741|gb|AFR63863.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357743|gb|AFR63864.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357747|gb|AFR63866.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357749|gb|AFR63867.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357751|gb|AFR63868.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357753|gb|AFR63869.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357755|gb|AFR63870.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357759|gb|AFR63872.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357761|gb|AFR63873.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357763|gb|AFR63874.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357765|gb|AFR63875.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357767|gb|AFR63876.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357769|gb|AFR63877.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357771|gb|AFR63878.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357773|gb|AFR63879.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357775|gb|AFR63880.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357777|gb|AFR63881.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
Length = 187
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 70 MQQILHQLKHDTRVIPEEI-----IFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKS 124
M L RV E + + +V++ Y +A L ++A ++FDEMP +R V S
Sbjct: 10 MYSSCGDLSSALRVFDESVSKDLPAWNSVVNAYAKAGLSDYARKLFDEMP----ERNVIS 65
Query: 125 LNTLLNALLTCGKLDRMKELF 145
+ L+N + CGK +LF
Sbjct: 66 WSCLINGYVMCGKYKEALDLF 86
>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Vitis vinifera]
Length = 762
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
K + NL+ Y++II L R E +IL ++ + P+E+ + +++ Y +
Sbjct: 278 KGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKG-FTPDEVTYNTLLNGYCKEGNFH 336
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153
AL + EM V +V + L+N++ L+R E F ++ +
Sbjct: 337 QALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGL 385
>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Cucumis sativus]
gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Cucumis sativus]
Length = 588
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
P+ I + +I+ Y + +E A+++F+EM + VK+ LL AL GK+D KEL
Sbjct: 340 PDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKEL 399
Query: 145 FISFNLKAI--------AVLDGLCSN 162
F A+ LDGLC N
Sbjct: 400 FRVIKPYAMPKDLCICCIFLDGLCKN 425
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 10/137 (7%)
Query: 37 NDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISF 96
NDT +P + R N++ Y +II L + ++E + +++ D V P + F +I
Sbjct: 224 NDT-SPYVFNCRPNVISYSIIIDGLCKVGNWEEAICLFNEMV-DQGVQPNVVTFSVLIDM 281
Query: 97 YGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA-- 154
+ + A ++ + M + + + +L+ G L+ KELF+S K
Sbjct: 282 LCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPD 341
Query: 155 ------VLDGLCSNLKI 165
+++G C LK+
Sbjct: 342 VISYNMLINGYCKTLKV 358
>gi|399216092|emb|CCF72780.1| unnamed protein product [Babesia microti strain RI]
Length = 1520
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 47/105 (44%)
Query: 40 EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR 99
E L + N + Y + L M DE +L +K ++ + P II+ +I +G+
Sbjct: 967 EMTSLYGYELNEVTYGCMFDALVSNNMLDEALSLLKDMKKNSNIKPNTIIYSTLIKGFGQ 1026
Query: 100 ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
+ L AL ++ M V + N++++A G +++ L
Sbjct: 1027 TKQLNKALNIYLTMLDEGVVPNTITYNSIIDACARVGDMNKAANL 1071
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 65 KMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMP-SFNVQRTVK 123
+++DEMQ+ + P +I YGR L+ A Q+ DE+P +N+Q
Sbjct: 1140 QLWDEMQE--------NGIAPSNFTLTILIKMYGRLGQLDKAFQLMDELPRKYNIQTNTH 1191
Query: 124 SLNTLLNALLTCGKLDRMKELFISFNLKAI 153
L++A +T GK ++F N I
Sbjct: 1192 VYTCLMSACITNGKYKMALDVFNCMNGNGI 1221
>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
Length = 814
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+ + Y ++ L +A+ D+ + L Q+ + V+P + N+I Y + A++V
Sbjct: 253 DFVTYSSVVHALCKARAMDKAEAFLRQMVNKG-VLPNNWTYNNLIYGYSSTGQWKEAVRV 311
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA 152
F EM ++ V +L+ L+ +L GK+ +++F + +K
Sbjct: 312 FKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKG 354
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y +++ +M + + D + P+ F +I Y +L+ A+ +
Sbjct: 358 NVFSYTIMLNGYATKGCLVDMTDLFDLMLGDG-IAPDIYTFNVLIKAYANCGMLDKAMII 416
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F+EM V+ V + T++ AL GK+D E F
Sbjct: 417 FNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKF 452
>gi|157873873|ref|XP_001685437.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68128509|emb|CAJ08641.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 801
Score = 42.7 bits (99), Expect = 0.055, Method: Composition-based stats.
Identities = 23/107 (21%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
R N+ Y L+ R+ +++ + QL+ +++PE ++ ++ + R + A
Sbjct: 130 RPNMESYMLLFRACERSALYNRAFLLYQQLRQQFQLVPETAVYNTLLGYCAAVRDVAQAT 189
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF---ISFNLK 151
+ +EM NV R V + N L++ ++ + ++F + NLK
Sbjct: 190 FLIEEMKQLNVPRDVNTYNCLMSVMMESAPYEETLKVFQELLYLNLK 236
>gi|388521091|gb|AFK48607.1| unknown [Medicago truncatula]
Length = 506
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
P + +C+++ Y + + A ++F+ M V V S N ++N K+D+ +L
Sbjct: 346 PNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCKIKKVDKAMKL 405
Query: 145 FISFNLKAI--------AVLDGLCSNLKI 165
FI + K I +++DGLC + KI
Sbjct: 406 FIEMHHKHIIPDVVTYNSLIDGLCKSGKI 434
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+++I + K D+ ++ ++ H +IP+ + + ++I ++ + +A Q+
Sbjct: 382 NVHSYNIMINGFCKIKKVDKAMKLFIEMHHK-HIIPDVVTYNSLIDGLCKSGKISYAFQL 440
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVL-DGLCSNLKI 165
+EM + + N++LNALLT ++K+ I N+ +L GLC + K+
Sbjct: 441 VNEMHDRGQPPNIITYNSILNALLT-----KLKDQGIQPNMHTDTILIKGLCQSGKL 492
>gi|356564951|ref|XP_003550709.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic-like [Glycine max]
Length = 488
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 46/95 (48%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N + ++++ G+A MFD+M+++L + T P+ +IS +G ++ +
Sbjct: 231 NTVTQNIVLGGYGKAGMFDQMEKVLSSMLQSTTCKPDVWTMNTIISVFGNMGQIDMTEKW 290
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
+++ F ++ ++ N L+ A D+M +
Sbjct: 291 YEKFRYFGIEPETRTFNILIGAYGKKRMYDKMSSV 325
>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 716
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 62/124 (50%), Gaps = 17/124 (13%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ ++ L R KM D+ ++ ++ + V P+ +I Y + + AL +
Sbjct: 433 DVVTYNTLLNGLCRGKMLDDADELFKEMV-ERGVFPDFYTLTTLIHGYCKDGNMTKALSL 491
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL------------FISFNLKAIAVLD 157
F+ M +++ V + NTL++ G++++ KEL +ISF++ +++
Sbjct: 492 FETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSI----LIN 547
Query: 158 GLCS 161
G CS
Sbjct: 548 GFCS 551
>gi|297733858|emb|CBI15105.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 42.7 bits (99), Expect = 0.055, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+ +I G+ + ++ ++IL + ++ V+P + VI YG+A L E AL
Sbjct: 184 NMETYEGLIFACGKGGLHEDAKKILLHM-NEKGVVPSSKAYTGVIEAYGQAALYEEALVA 242
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA 154
F+ M + TV++ N+L+ G + + + +A
Sbjct: 243 FNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVA 287
>gi|223974389|gb|ACN31382.1| unknown [Zea mays]
Length = 356
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 14/140 (10%)
Query: 11 RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEM 70
RL + L Q P+ ALQ+ + A + F + Y+ II KLG A FD M
Sbjct: 58 RLLTALREQADPEAALQMLNS---------ALAREDFAPSRAVYEEIIQKLGTAGAFDLM 108
Query: 71 QQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQ-VFDEMPSFNVQRTVKSLNTLL 129
+ ++ +++ + ++ + + Y R R + A+ V +++ +F VQ N LL
Sbjct: 109 EGLVREMRREGHEAGAGVVR-SFVESYARLRRFDDAVDLVRNQLNTFGVQADTAVYNHLL 167
Query: 130 NALLTCGKLDRMKELFISFN 149
N L + RMK L +N
Sbjct: 168 NVL---AEGSRMKLLESVYN 184
>gi|115473111|ref|NP_001060154.1| Os07g0590600 [Oryza sativa Japonica Group]
gi|34393454|dbj|BAC82993.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113611690|dbj|BAF22068.1| Os07g0590600 [Oryza sativa Japonica Group]
Length = 784
Score = 42.7 bits (99), Expect = 0.056, Method: Composition-based stats.
Identities = 26/110 (23%), Positives = 57/110 (51%), Gaps = 4/110 (3%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLL 103
+ P RY Y+ +I+ R ++ E Q+ ++K + P+++ F +++ YG+AR
Sbjct: 239 VAPDRYT---YNTLISCCRRRALYKEAAQVFDEMKA-SGFEPDKVTFNSLLDVYGKARRH 294
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153
+ A++V EM +V + N+L+++ + G L++ L +K +
Sbjct: 295 DEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGM 344
Score = 42.4 bits (98), Expect = 0.075, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F +++ ++ ++ G+ + E+ + ++K IPE + ++IS Y R L + A
Sbjct: 414 FVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMK-KAGYIPERDTYVSLISSYSRCGLFDLA 472
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+Q++ M + V + N +L+AL G+ ++ ++LF
Sbjct: 473 MQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLF 511
Score = 37.4 bits (85), Expect = 2.6, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I+ R +FD QI ++ + + P+ + V+S R E A ++F EM
Sbjct: 456 YVSLISSYSRCGLFDLAMQIYKRMM-EAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEM 514
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
+ + S ++LL+A +LD+MK L
Sbjct: 515 EERDCKPDEYSYSSLLHAYANAKRLDKMKAL 545
Score = 35.4 bits (80), Expect = 8.0, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F + + ++ ++ G+A+ DE +++ +++ P + + ++IS Y + LLE A
Sbjct: 274 FEPDKVTFNSLLDVYGKARRHDEAIEVIQEMER-VGCPPSVVTYNSLISSYVKDGLLEQA 332
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD 139
+ + EM ++ V + TL++ L GK+D
Sbjct: 333 VALKQEMEVKGMKPDVVTYTTLISGLDRAGKID 365
>gi|357432702|gb|AET79028.1| At3g62890-like protein [Arabidopsis halleri]
gi|357432706|gb|AET79030.1| At3g62890-like protein [Arabidopsis halleri]
Length = 151
Score = 42.7 bits (99), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 92 NVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+VI+ Y +A L++ A ++FDEMP +R V S + L+N + CGK +LF
Sbjct: 18 SVINAYAKAGLIDXARKLFDEMP----ERNVISWSCLINGYVMCGKYKEALDLF 67
>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
Length = 485
Score = 42.7 bits (99), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 80 DTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD 139
D + PE +F ++ R L A VFDEM S V+RTV S NT+++ + G LD
Sbjct: 109 DAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLD 168
Query: 140 -------RMKELFISFNLKAI-AVLDGLCSNLKI 165
RM E ++ ++ A++ GLC +I
Sbjct: 169 GAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRI 202
>gi|302817236|ref|XP_002990294.1| hypothetical protein SELMODRAFT_131439 [Selaginella moellendorffii]
gi|300141856|gb|EFJ08563.1| hypothetical protein SELMODRAFT_131439 [Selaginella moellendorffii]
Length = 1139
Score = 42.7 bits (99), Expect = 0.056, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Query: 64 AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVK 123
A +F +MQ R +E+++ +VIS YG+A L + A ++F EM + VK
Sbjct: 467 ASIFSDMQM--------KRCPVDEVVYTSVISIYGKAGLYDEAEKLFQEMNELRLLVDVK 518
Query: 124 SLNTLLNALLTCGKLDR----MKELF 145
+ + + N L GK + M+EL
Sbjct: 519 TFSVMANVRLKAGKYNEAVQVMEELL 544
Score = 38.5 bits (88), Expect = 0.97, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
R +L YD +I+ ++ + +++ LK P+E ++ +++ Y ++ + EHA
Sbjct: 892 LRPSLQTYDTMISVFAKSGRTRDAEKMFKDLK-SAGFQPDEKVYSQMMNCYAKSGMYEHA 950
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFI 146
+F+ M ++ S N L++A G+ + ++L +
Sbjct: 951 ADLFEAMKLRGLRPHEVSYNNLIDAYARAGQFAKAEQLLV 990
>gi|226494779|ref|NP_001147294.1| transferase, transferring glycosyl groups [Zea mays]
gi|195609598|gb|ACG26629.1| transferase, transferring glycosyl groups [Zea mays]
gi|414866930|tpg|DAA45487.1| TPA: hypothetical protein ZEAMMB73_715808 [Zea mays]
Length = 546
Score = 42.7 bits (99), Expect = 0.056, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L ++ QQ+ ++ + P E +C+++++Y R L+ A +V+DEM
Sbjct: 282 YTTVIHGLCEMRLIGVAQQMWDEMV-GRGIAPNEYAYCSLVTYYCRVGDLDKARKVYDEM 340
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153
++T S N L+ G++ E+F ++K I
Sbjct: 341 LEKGFKQTTVSCNILIKGFCVHGRVYDALEVFEEMSIKGI 380
Score = 38.5 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 21/127 (16%)
Query: 50 NLLHYDLIITKLGRA-KMFDEMQQILHQLKHDTRVIPEEIIFCNVI--SFYGRARLLEHA 106
+L+ Y + L +A K++DEM + + + + CN++ F R+ + A
Sbjct: 319 SLVTYYCRVGDLDKARKVYDEMLE---------KGFKQTTVSCNILIKGFCVHGRVYD-A 368
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD---RMKELFISFNLKAIAVLDG----- 158
L+VF+EM ++ V + +TL+N L GKLD RM E +S L+ + G
Sbjct: 369 LEVFEEMSIKGIKHDVITYDTLINGLFKAGKLDLAMRMYEWLLSSGLEPTSSTFGRLICA 428
Query: 159 LCSNLKI 165
+C N ++
Sbjct: 429 MCENGQV 435
>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
Length = 691
Score = 42.7 bits (99), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+L+I L E ++I++ L + R+IP+ + + +IS ++ AL +
Sbjct: 549 SIVTYNLLIKGLCNQSQISEAEEIINSLS-NHRLIPDAVSYNTLISACCYRGNIDKALDL 607
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
M + ++ TV++ + L++ L G+L+ M+ L+
Sbjct: 608 QQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLY 643
Score = 39.7 bits (91), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 12/104 (11%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I L +A+ Q +L +++ D V P F +I YGR LE V EM
Sbjct: 413 YNALINGLCKAERITNAQDLLMEMQ-DNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEM 471
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLD 157
++ V S +++NA GK+ +A+A+LD
Sbjct: 472 QENGLKPNVVSYGSIVNAFCKNGKIP-----------EAVAILD 504
>gi|125600921|gb|EAZ40497.1| hypothetical protein OsJ_24952 [Oryza sativa Japonica Group]
Length = 766
Score = 42.7 bits (99), Expect = 0.057, Method: Composition-based stats.
Identities = 26/110 (23%), Positives = 57/110 (51%), Gaps = 4/110 (3%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLL 103
+ P RY Y+ +I+ R ++ E Q+ ++K + P+++ F +++ YG+AR
Sbjct: 221 VAPDRYT---YNTLISCCRRRALYKEAAQVFDEMKA-SGFEPDKVTFNSLLDVYGKARRH 276
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153
+ A++V EM +V + N+L+++ + G L++ L +K +
Sbjct: 277 DEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGM 326
Score = 42.4 bits (98), Expect = 0.077, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F +++ ++ ++ G+ + E+ + ++K IPE + ++IS Y R L + A
Sbjct: 396 FVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMK-KAGYIPERDTYVSLISSYSRCGLFDLA 454
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+Q++ M + V + N +L+AL G+ ++ ++LF
Sbjct: 455 MQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLF 493
Score = 37.4 bits (85), Expect = 2.6, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I+ R +FD QI ++ + + P+ + V+S R E A ++F EM
Sbjct: 438 YVSLISSYSRCGLFDLAMQIYKRMM-EAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEM 496
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
+ + S ++LL+A +LD+MK L
Sbjct: 497 EERDCKPDEYSYSSLLHAYANAKRLDKMKAL 527
Score = 35.4 bits (80), Expect = 8.2, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F + + ++ ++ G+A+ DE +++ +++ P + + ++IS Y + LLE A
Sbjct: 256 FEPDKVTFNSLLDVYGKARRHDEAIEVIQEMER-VGCPPSVVTYNSLISSYVKDGLLEQA 314
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD 139
+ + EM ++ V + TL++ L GK+D
Sbjct: 315 VALKQEMEVKGMKPDVVTYTTLISGLDRAGKID 347
>gi|307135890|gb|ADN33755.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
melo]
Length = 566
Score = 42.7 bits (99), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEI---IFCNVISFYGR 99
P K F N++ Y++++ L ++E +L ++ D R P + I ++ +GR
Sbjct: 264 PSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMNGDERS-PSTVTYNILIGSLALHGR 322
Query: 100 ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD 139
EHAL+V +EM + T S N ++ L GKLD
Sbjct: 323 T---EHALEVLEEMIRARFKPTASSYNPIIAHLCKDGKLD 359
>gi|212274769|ref|NP_001130292.1| uncharacterized protein LOC100191386 [Zea mays]
gi|194688764|gb|ACF78466.1| unknown [Zea mays]
Length = 510
Score = 42.7 bits (99), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKH--------DTRVIPEEIIFCNVISFYGRAR 101
+++ Y+ ++ G A +F E + ++ + V P + + +I+ YG++
Sbjct: 186 SVVTYNTMLRVYGDAGLFGEAVHLFDLMRSTSDGNGGAGSSVKPNVVTYNTMITIYGKSL 245
Query: 102 LLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
E A ++ EM + VQ + +T+L+ + GKLDR LF
Sbjct: 246 EDEKAGRLVQEMQAIGVQPDAITYSTILSIWVKAGKLDRAARLF 289
>gi|15219527|ref|NP_177512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169780|sp|Q9C9U0.1|PP118_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g73710
gi|12324197|gb|AAG52063.1|AC012679_1 hypothetical protein; 49134-52109 [Arabidopsis thaliana]
gi|332197379|gb|AEE35500.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 991
Score = 42.7 bits (99), Expect = 0.058, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N++HY++++ LGRA +DE++ ++ H+ V+P + ++ YG+A L++ AL
Sbjct: 144 NVIHYNIVLRALGRAGKWDELRLCWIEMAHNG-VLPTNNTYGMLVDVYGKAGLVKEALLW 202
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
M ++ T++ G+ DR F
Sbjct: 203 IKHMGQRMHFPDEVTMATVVRVFKNSGEFDRADRFF 238
Score = 37.7 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L++ T V P E+++ ++I+ + + ++E A+Q F M VQ L +L+ A
Sbjct: 607 LYEAMEKTGVKPNEVVYGSLINGFAESGMVEEAIQYFRMMEEHGVQSNHIVLTSLIKAYS 666
Query: 134 TCGKL-------DRMKELFISFNLKAIAVLDGLCSNLKII 166
G L D+MK+ ++ A + LC++L I+
Sbjct: 667 KVGCLEEARRVYDKMKDSEGGPDVAASNSMLSLCADLGIV 706
>gi|147771903|emb|CAN75708.1| hypothetical protein VITISV_031421 [Vitis vinifera]
Length = 1313
Score = 42.7 bits (99), Expect = 0.058, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N++HY++++ LGRA+ +DE++ ++ + V+P + ++ YG+A L++ AL
Sbjct: 488 NVIHYNVVLRVLGRAQKWDELRLCWIEMAKNG-VLPTNNTYGMLVDVYGKAGLVKEALLW 546
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLD 139
M V ++NT++ L G+ D
Sbjct: 547 IKHMKLRGVFPDEVTMNTVVRVLKDAGEFD 576
>gi|357432718|gb|AET79036.1| At3g62890-like protein [Arabidopsis halleri]
gi|357432722|gb|AET79038.1| At3g62890-like protein [Arabidopsis halleri]
gi|357432724|gb|AET79039.1| At3g62890-like protein [Arabidopsis halleri]
Length = 151
Score = 42.7 bits (99), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 92 NVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+VI+ Y +A L++ A ++FDEMP +R V S + L+N + CGK +LF
Sbjct: 18 SVINAYAKAGLIDXARKLFDEMP----ERNVISWSCLINGYVMCGKYKEALDLF 67
>gi|398013647|ref|XP_003860015.1| hypothetical protein, conserved [Leishmania donovani]
gi|322498234|emb|CBZ33308.1| hypothetical protein, conserved [Leishmania donovani]
Length = 1002
Score = 42.7 bits (99), Expect = 0.060, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
K + N + Y++++ GRAK +++M++ L Q + + ++I +C +I+ YGR+RL +
Sbjct: 768 KGYTENNVTYNILMDGHGRAKGYEQMEE-LRQKRSAAGIPMDDITYCIMIAAYGRSRLDK 826
Query: 105 HALQVFDEM 113
++FDE+
Sbjct: 827 DVQRLFDEV 835
>gi|302822703|ref|XP_002993008.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
gi|300139208|gb|EFJ05954.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
Length = 431
Score = 42.7 bits (99), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I LGR K DE +L + P + NVI Y +A +E A+ V +M
Sbjct: 122 YAILIRSLGRCKR-DEEATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKM 180
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAV 155
N+ +LN+L+ A+ G+ + E+F +AV
Sbjct: 181 LDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAV 222
>gi|255660876|gb|ACU25607.1| pentatricopeptide repeat-containing protein [Verbena hastata]
Length = 484
Score = 42.7 bits (99), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 10/120 (8%)
Query: 35 NANDTEAPPLKPFRY----NLLHYDL-----IITKLGRAKMFDEMQQILHQLKHDTRVIP 85
++++T L+ FR+ NL ++ II LGRA + + IL +
Sbjct: 20 HSSNTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKGLEWD 79
Query: 86 EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
E++ + +I YG+ +++ ++++F +M V+RT+KS N L +L G+ K F
Sbjct: 80 EDM-WVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYF 138
>gi|242036493|ref|XP_002465641.1| hypothetical protein SORBIDRAFT_01g042790 [Sorghum bicolor]
gi|241919495|gb|EER92639.1| hypothetical protein SORBIDRAFT_01g042790 [Sorghum bicolor]
Length = 691
Score = 42.7 bits (99), Expect = 0.060, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 38 DTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFY 97
+ +A +KP NL+ Y+ ++ +GRA + + + +H+ D +V P +C ++ Y
Sbjct: 293 EMKATGVKP---NLVVYNTMLDAMGRA-LRPWVVKTIHREMVDQQVQPSRATYCCLLHAY 348
Query: 98 GRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
RAR E A+ V+ M + V N LL+ G +D +E+F
Sbjct: 349 TRARYGEDAMAVYRLMKDEAMDIDVMLYNMLLSMCADIGYVDEAEEIF 396
>gi|146083739|ref|XP_001464818.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134068913|emb|CAM67054.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 1002
Score = 42.7 bits (99), Expect = 0.060, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
K + N + Y++++ GRAK +++M++ L Q + + ++I +C +I+ YGR+RL +
Sbjct: 768 KGYTENNVTYNILMDGHGRAKGYEQMEE-LRQKRSAAGIPMDDITYCIMIAAYGRSRLDK 826
Query: 105 HALQVFDEM 113
++FDE+
Sbjct: 827 DVQRLFDEV 835
>gi|357118286|ref|XP_003560887.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial-like [Brachypodium distachyon]
Length = 676
Score = 42.7 bits (99), Expect = 0.061, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 16/97 (16%)
Query: 65 KMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKS 124
++FDEM Q + + + ++ Y R L+ A ++FDEMP QR V S
Sbjct: 116 RLFDEMPQ------------RDAVTWNTLLGAYVRRGLMVEAEKLFDEMP----QRNVAS 159
Query: 125 LNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCS 161
NT++ + G++++ ++F + +K A L L S
Sbjct: 160 WNTMVTGFFSAGQVNKALDMFDAMPVKDSASLGTLVS 196
>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Glycine max]
Length = 852
Score = 42.7 bits (99), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 15 LLH-LQKHPK--LALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQ 71
LLH L K K LAL FK D L P ++ Y+++I L R + +
Sbjct: 222 LLHRLSKSSKGGLALSFFK-------DMVVAGLSP---SVFTYNMVIGCLAREGDLEAAR 271
Query: 72 QILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA 131
+ ++K + P+ + + ++I YG+ +L A+ VF+EM + V + N+L+N
Sbjct: 272 SLFEEMKAKG-LRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINC 330
Query: 132 LLTCGKLDRMKELF 145
K +R+ + F
Sbjct: 331 FC---KFERIPQAF 341
>gi|340052383|emb|CCC46661.1| conserved hypothetical protein [Trypanosoma vivax Y486]
Length = 921
Score = 42.7 bits (99), Expect = 0.061, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
K + N + Y+++ GRA+ ++M++++ Q + V +++ +C +I+ YGR RL
Sbjct: 769 KGYGNNAVTYNILADGYGRARRLEQMEEVVQQ-RRAAEVPMDDLAYCIMIAAYGRMRLKN 827
Query: 105 HALQVFDEM--PSFNVQRTVKSLNTLLNALLTCGKLDRMKE 143
L++ +E+ P+ + + K + +++ CG + M++
Sbjct: 828 EVLRLHNEITQPANSHLFSKKVVWAFIDSFCRCGAPEEMEK 868
>gi|224077524|ref|XP_002305285.1| predicted protein [Populus trichocarpa]
gi|222848249|gb|EEE85796.1| predicted protein [Populus trichocarpa]
Length = 523
Score = 42.7 bits (99), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 41 APPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLK--HDTRVIPEEIIFCNVISFYG 98
A + F ++ Y +++ LG ++ F + L +++ HD I +EII+ V Y
Sbjct: 102 AKRIPGFEHSEESYHILVNILGTSRQFAILWDFLIEMRESHDFE-INQEIIWL-VFRSYS 159
Query: 99 RARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
RA L A++ FD M F ++ +V L+ LL L C + ++ F
Sbjct: 160 RANLPSDAIRAFDRMAEFGLRPSVDDLDKLLYVLCKCKHVKCAQQFF 206
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+ II KL + ++ Q+LH++ + V P+ + +++++ + A ++
Sbjct: 321 NVFTYNCIIKKLCKNGKVEDAYQLLHEMM-ERGVSPDAWSYNTILAYHCEHSEVNRATKL 379
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLC 160
M N S N LL L+ G+ DR E++ S + ++ GLC
Sbjct: 380 ISIMVKDNCLPDRHSYNMLLKLLVRVGRFDRATEIWESMGERGFYPSVSTYSVMIHGLC 438
>gi|9755842|emb|CAC01928.1| 67kD chloroplastic RNA-binding protein, P67 [Arabidopsis thaliana]
Length = 702
Score = 42.7 bits (99), Expect = 0.062, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 38 DTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFY 97
+ +A +KP NL+ Y+ +I +GRAK + + I L + P + ++ Y
Sbjct: 305 EMKALGVKP---NLVIYNRLIDSMGRAKRPWQAKIIYKDLITNG-FTPNWSTYAALVRAY 360
Query: 98 GRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
GRAR + AL ++ EM + TV NTLL+ G +D E+F
Sbjct: 361 GRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADIGYVDEAFEIF 408
>gi|356547370|ref|XP_003542086.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g65820-like [Glycine max]
Length = 628
Score = 42.7 bits (99), Expect = 0.062, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 44/92 (47%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L R + F + ++ +++ + + +F ++ + AR++ A+QV DEM
Sbjct: 133 YKAMIKVLSRMRQFGAVWALIEEMRQENPHLITPQVFVILMRRFASARMVHKAVQVLDEM 192
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
P++ + LL+AL G + LF
Sbjct: 193 PNYGCEPDEYVFGCLLDALRKNGSVKEAASLF 224
>gi|302813417|ref|XP_002988394.1| hypothetical protein SELMODRAFT_128001 [Selaginella moellendorffii]
gi|300143796|gb|EFJ10484.1| hypothetical protein SELMODRAFT_128001 [Selaginella moellendorffii]
Length = 388
Score = 42.7 bits (99), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 43/177 (24%)
Query: 25 ALQLFKN--PNPNA--------------NDTEAPPL--------KPFRYNLLHYDLIITK 60
ALQL + P PN DTEA L PF ++ Y+ +I
Sbjct: 137 ALQLMREMEPAPNTITYNTVINGLWRSRKDTEAQALLDEMISVGCPF--SVSTYNCVIAN 194
Query: 61 LGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR 120
L R++ ++ + ++ + +E+ F ++ + R + LE A D M +
Sbjct: 195 LCRSREMEKAVDVFLYMRK-KKCETDEVTFATLVDGFLRDKRLEDAGGTLDWMARAGIPS 253
Query: 121 TVKSLNTLLNALLTCGKLDRMKELF------------ISFNLKAIAVLDGLCSNLKI 165
VKS LLNAL G + E+F +S+N+ +L GLC L++
Sbjct: 254 DVKSYTKLLNALCDRGSAQKACEIFNLMVDRGYAPTLVSYNV----LLKGLCKALRV 306
>gi|26452823|dbj|BAC43491.1| putative salt-inducible protein [Arabidopsis thaliana]
Length = 702
Score = 42.7 bits (99), Expect = 0.062, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 38 DTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFY 97
+ +A +KP NL+ Y+ +I +GRAK + + I L + P + ++ Y
Sbjct: 305 EMKALGVKP---NLVIYNRLIDSMGRAKRPWQAKIIYKDLITNG-FTPNWSTYAALVRAY 360
Query: 98 GRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
GRAR + AL ++ EM + TV NTLL+ G +D E+F
Sbjct: 361 GRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADIGYVDEAFEIF 408
>gi|413944457|gb|AFW77106.1| hypothetical protein ZEAMMB73_510937 [Zea mays]
Length = 492
Score = 42.7 bits (99), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
+ + ++ Y+++I GRA ++M+ I +K + R+ P + C+V+ YGRA ++
Sbjct: 348 YSWTIVTYNVVIDAFGRAGDLEQMEYIFRLMKSE-RIKPNCVTLCSVVRAYGRAGEVKKI 406
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ + ++ + N L++A G L M ++
Sbjct: 407 KTALRIIENSDITLDIVFFNCLVDAYGRVGCLAEMWDIL 445
>gi|356560497|ref|XP_003548528.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
mitochondrial-like [Glycine max]
Length = 490
Score = 42.7 bits (99), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/106 (20%), Positives = 61/106 (57%), Gaps = 2/106 (1%)
Query: 41 APPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRA 100
A FR++ YD+++ LGR K+ ++++ +L +++ + ++ + + F G
Sbjct: 99 ASSRPSFRHSSESYDMMVDILGRMKVMEKLRDLLEEMR-EGGLVNMNTVAKAMRRFVGAG 157
Query: 101 RLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFI 146
+ ++ A+++FD++ + +++ +S+N LL+ L + + +E+F+
Sbjct: 158 QWVD-AVRIFDDLQALGLEKNTESMNLLLDTLCKEKFVQQAREIFL 202
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y I+ LG+AK F+E ++ +++ + P+ + F ++I GRA L+ A V
Sbjct: 281 NVITYTSIMCALGKAKKFEEALKVPERMR-SSGCRPDTLFFNSLIHTLGRAGRLDDAADV 339
Query: 110 FD-EMPSFNVQRTVKSLNTLLN 130
F EMP V + N++++
Sbjct: 340 FKVEMPKAGVSPNTSTYNSMIS 361
>gi|302794911|ref|XP_002979219.1| hypothetical protein SELMODRAFT_110655 [Selaginella moellendorffii]
gi|300152987|gb|EFJ19627.1| hypothetical protein SELMODRAFT_110655 [Selaginella moellendorffii]
Length = 1143
Score = 42.7 bits (99), Expect = 0.063, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Query: 64 AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVK 123
A +F +MQ R +E+++ +VIS YG+A L + A ++F EM + VK
Sbjct: 471 ASIFSDMQM--------KRCPVDEVVYTSVISIYGKAGLYDEAEKLFQEMNELRLLVDVK 522
Query: 124 SLNTLLNALLTCGKLDR----MKELF 145
+ + + N L GK + M+EL
Sbjct: 523 TFSVMANVRLKAGKYNEAVQVMEELL 548
Score = 38.5 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
R +L YD +I+ ++ + +++ LK P+E ++ +++ Y ++ + EHA
Sbjct: 893 LRPSLQTYDTMISVFAKSGRTRDAEKMFKDLK-SAGFQPDEKVYSQMMNCYAKSGMYEHA 951
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFI 146
+F+ M ++ S N L++A G+ + ++L +
Sbjct: 952 ADLFEAMKLRGLRPHEVSYNNLIDAYARAGQFAKAEQLLV 991
>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
Length = 1023
Score = 42.7 bits (99), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I + + + + ++K +IP+ + + ++I YG+ L+ + F+EM
Sbjct: 136 YNIMIDCMCKEGDIEAASGLFEEMKF-RGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEM 194
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
S + + V + NTL+N GKL + E F
Sbjct: 195 KSMSCEPDVITYNTLINCFCKFGKLPKGLEFF 226
>gi|225447241|ref|XP_002272784.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g73710-like [Vitis vinifera]
Length = 1008
Score = 42.7 bits (99), Expect = 0.063, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N++HY++++ LGRA+ +DE++ ++ + V+P + ++ YG+A L++ AL
Sbjct: 183 NVIHYNVVLRVLGRAQKWDELRLCWIEMAKNG-VLPTNNTYGMLVDVYGKAGLVKEALLW 241
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLD 139
M V ++NT++ L G+ D
Sbjct: 242 IKHMKLRGVFPDEVAMNTVVRVLKDAGEFD 271
>gi|242075962|ref|XP_002447917.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
gi|241939100|gb|EES12245.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
Length = 550
Score = 42.7 bits (99), Expect = 0.063, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 42/78 (53%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+++++ L RAK + +L +L+ D +P + + +VIS Y +A +E AL V+++M
Sbjct: 256 HNILVDGLCRAKQVNRGHDLLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDALSVYNDM 315
Query: 114 PSFNVQRTVKSLNTLLNA 131
+ + N L+N
Sbjct: 316 LESGTRPNTVTYNVLING 333
>gi|15219388|ref|NP_178067.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75200795|sp|Q9SAK0.1|PP132_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g79490, mitochondrial; AltName: Full=Protein EMBRYO
DEFECTIVE 2217; Flags: Precursor
gi|4835759|gb|AAD30226.1|AC007202_8 T8K14.9 [Arabidopsis thaliana]
gi|332198129|gb|AEE36250.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 836
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+LII L ++ D ++ Q+K + ++ P +F +++ G+A L+ +++V+ EM
Sbjct: 316 YELIIPSLAKSGRLDAAFKLFQQMK-ERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEM 374
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F + + +L+++ GKLD L+
Sbjct: 375 QGFGHRPSATMFVSLIDSYAKAGKLDTALRLW 406
>gi|452819918|gb|EME26968.1| mitochondrial protein translocase, MPT family [Galdieria
sulphuraria]
Length = 466
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ I+ RA ++ +Q+ H +IP I + +I G+ + L+ A F+EM
Sbjct: 287 YNAILKGYARAGNLQSAIEVSNQM-HSEGIIPRAITYSVLIDSLGKCKRLDEAFGFFEEM 345
Query: 114 PSFNVQRTVKSLNTLLNALLTCGK-------LDRMKELFISFN 149
+ +Q V + N LL+A +D M+E ++F+
Sbjct: 346 EAKGIQPNVITFNVLLSACAASNNYTRALVIVDWMEERGVAFD 388
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLL 103
+KP N + Y+ +I R ++ ++ +LK + P+E + ++ Y RA L
Sbjct: 244 MKP---NKVVYNAMIDICSRTDRMEQALKLYQELKLENGETPDEYTYNAILKGYARAGNL 300
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153
+ A++V ++M S + + + L+++L C +LD F K I
Sbjct: 301 QSAIEVSNQMHSEGIIPRAITYSVLIDSLGKCKRLDEAFGFFEEMEAKGI 350
>gi|242092396|ref|XP_002436688.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
gi|241914911|gb|EER88055.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
Length = 551
Score = 42.4 bits (98), Expect = 0.064, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCN-VISFYGRARLLEHALQVFDE 112
Y ++I LG + DE + Q K P E+ CN V+ Y RA EHA ++ DE
Sbjct: 343 YCMLINGLGSEERLDEALKYFEQYKKSG--FPMEVPTCNAVVGAYCRASKFEHAFKMVDE 400
Query: 113 MPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
M + ++ + +L+ L+ K + +F
Sbjct: 401 MRECKIGPNSRTYDVILHYLIKSQKFEEAYNVF 433
>gi|168049914|ref|XP_001777406.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671255|gb|EDQ57810.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 570
Score = 42.4 bits (98), Expect = 0.064, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 62/140 (44%), Gaps = 10/140 (7%)
Query: 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMF 67
+P+ + ++L+ K K+AL LFK N F N+ Y++++ L R + +
Sbjct: 9 NPYDVVAILNTLKSWKVALSLFKWLQAEQN---------FNLNIYTYNVMLKVLRRGQQW 59
Query: 68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNT 127
+ QQI + + + P+ I + +IS R + A+ FD M + +T
Sbjct: 60 ELSQQIAEDMI-NAGIRPDNITYSTLISCANRCNYQDAAMAWFDRMHDAQCVPDAVTYST 118
Query: 128 LLNALLTCGKLDRMKELFIS 147
+++ GK D L+ S
Sbjct: 119 MIDVYGKVGKYDEAVALYES 138
Score = 40.0 bits (92), Expect = 0.37, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 3/114 (2%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++ GRA I ++K + + P +++ +IS GRA + HAL+VF EM
Sbjct: 151 YGTMVRLFGRAGYISAAVSIFDEMK-GSGIQPGSVVYNIMISCLGRAGRMGHALKVFQEM 209
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIM 167
V+ +L+T++ GK+ M+ L I +++ D + N I M
Sbjct: 210 KQAGVKPNAVTLSTVMEIYSRSGKV--MEGLGIFHHMRQDLACDIIVYNAVIKM 261
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I G+ +DE + +K + P+++ + ++ +GRA + A+ +FDEM
Sbjct: 116 YSTMIDVYGKVGKYDEAVALYESVKK-SGWKPDKVTYGTMVRLFGRAGYISAAVSIFDEM 174
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+Q N +++ L G++ ++F
Sbjct: 175 KGSGIQPGSVVYNIMISCLGRAGRMGHALKVF 206
>gi|19071826|dbj|BAB85657.1| PnC401 homologue [Arabidopsis thaliana]
Length = 831
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y ++T L R K F + ++ +++ + + P+ I+F +I+ + L+ A+++
Sbjct: 353 SLITYTTLVTALTRQKHFHSLLSLISKVEKNG-LKPDTILFNAIINASSESGNLDQAMKI 411
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F++M + T + NTL+ GKL+ L
Sbjct: 412 FEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLL 447
>gi|29294052|gb|AAO73889.1| protein kinase family [Arabidopsis thaliana]
Length = 854
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y ++T L R K F + ++ +++ + + P+ I+F +I+ + L+ A+++
Sbjct: 376 SLITYTTLVTALTRQKHFHSLLSLISKVEKNG-LKPDTILFNAIINASSESGNLDQAMKI 434
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F++M + T + NTL+ GKL+ L
Sbjct: 435 FEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLL 470
>gi|42570531|ref|NP_850859.2| SNF1-like protein kinase [Arabidopsis thaliana]
gi|75160582|sp|Q8S9D1.1|PP395_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g21222; AltName: Full=SNF1-like protein kinase AtC401
gi|19071860|dbj|BAB85674.1| SNF1-like protein kinase [Arabidopsis thaliana]
gi|332005563|gb|AED92946.1| SNF1-like protein kinase [Arabidopsis thaliana]
Length = 831
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y ++T L R K F + ++ +++ + + P+ I+F +I+ + L+ A+++
Sbjct: 353 SLITYTTLVTALTRQKHFHSLLSLISKVEKNG-LKPDTILFNAIINASSESGNLDQAMKI 411
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F++M + T + NTL+ GKL+ L
Sbjct: 412 FEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLL 447
>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
Length = 814
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+ + Y ++ L +A+ D+ + L Q+ + V+P + N+I Y + A++V
Sbjct: 253 DFVTYSSVVHALCKARAMDKAEAFLRQMVNKG-VLPNNWTYNNLIYGYSSTGQWKEAVRV 311
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA 152
F EM ++ V + N L+ +L GK+ +++F + +K
Sbjct: 312 FKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKG 354
>gi|357140125|ref|XP_003571621.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Brachypodium distachyon]
Length = 814
Score = 42.4 bits (98), Expect = 0.065, Method: Composition-based stats.
Identities = 25/110 (22%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ + ++I L R+ F E+ +L +++ + P E+I +I ++ R A+++
Sbjct: 300 SMVTFGILINGLKRSDRFGEVGALLREME-GLGITPNEVICNELIDWHCRKGHFTEAIRL 358
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGL 159
FDEM S ++ T + N + AL G+++R + + + + GL
Sbjct: 359 FDEMVSKEMKSTAVTYNLIARALCKEGEMERAERILEEMLSTGMTIHSGL 408
>gi|297839813|ref|XP_002887788.1| EMB2217 [Arabidopsis lyrata subsp. lyrata]
gi|297333629|gb|EFH64047.1| EMB2217 [Arabidopsis lyrata subsp. lyrata]
Length = 832
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+LII L ++ D ++ Q+K + ++ P +F +++ G+A L+ +++V+ EM
Sbjct: 312 YELIIPSLAKSGRLDAAFKLFQQMK-ERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEM 370
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F + + +L+++ GKLD L+
Sbjct: 371 QGFGHRPSATMFVSLIDSYAKAGKLDTALRLW 402
>gi|297839237|ref|XP_002887500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333341|gb|EFH63759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 989
Score = 42.4 bits (98), Expect = 0.067, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N++HY++++ LGRA +DE++ ++ H+ V+P + ++ YG+A L++ AL
Sbjct: 138 NVIHYNIVLRALGRAGKWDELRLCWIEMAHNG-VLPTNNTYGMLVDVYGKAGLVKEALLW 196
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
M ++ T++ G+ DR F
Sbjct: 197 IKHMGQRMHFPDEVTMATVVRVFKNSGEFDRADRFF 232
Score = 37.4 bits (85), Expect = 2.5, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L++ T V P E+++ ++I+ + + ++E A+Q F M VQ L +L+ A
Sbjct: 604 LYEAMKKTGVKPNEVVYGSLINGFAESGMVEEAIQYFKLMEEHGVQSNHIVLTSLIKAYS 663
Query: 134 TCGKL-------DRMKELFISFNLKAIAVLDGLCSNLKII 166
G L D+MK+ ++ A + LC++L I+
Sbjct: 664 KVGCLEEARRVYDKMKDSGGGPDVAASNSMLSLCADLGIV 703
>gi|110742004|dbj|BAE98941.1| putative salt-inducible protein [Arabidopsis thaliana]
Length = 497
Score = 42.4 bits (98), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+ ++ ++ D+ + ++ + R P+ F +I+ Y R+ + AL +
Sbjct: 192 NVGVYNTVVNGYVKSGDMDKALRFYQRMGKE-RAKPDVCTFNILINGYCRSSKFDLALDL 250
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLD-------RMKELFISFNLKAIAVL-DGLCS 161
F EM + V S NTL+ L+ GK++ M EL F+ +L DGLC
Sbjct: 251 FREMKEKGCEPNVVSFNTLIRGFLSSGKIEEGVKMAYEMIELGCRFSEATCEILVDGLCR 310
Query: 162 NLKI 165
++
Sbjct: 311 EGRV 314
>gi|125557895|gb|EAZ03431.1| hypothetical protein OsI_25569 [Oryza sativa Indica Group]
Length = 398
Score = 42.4 bits (98), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 9/129 (6%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
NL+ ++ +IT +DE + + + R P+E +V+S + +E+ +
Sbjct: 25 NLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWI 84
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVL---------DGLC 160
+ N+ TV N L++ CG + R + +F + I +GLC
Sbjct: 85 SSFIGKSNIHLTVALGNALIDMFAKCGDVGRAQSIFYKMETRCIITWTTMISGFAFNGLC 144
Query: 161 SNLKIIMND 169
+ ++ N+
Sbjct: 145 RDALLVYNN 153
>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 906
Score = 42.4 bits (98), Expect = 0.068, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I G A FDE +L + K IP I + +++ GR +E AL++ DEM
Sbjct: 346 YNTMIMGYGSAGKFDEAYSLLERQKRKG-CIPSVIAYNCILTCLGRKGKVEEALRIHDEM 404
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKL-------DRMKELFISFNLKAIAVL-DGLCSNLKI 165
+ + + N L++ L G+L D MKE + N+ + ++ D LC K+
Sbjct: 405 RQ-DAAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKL 463
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F +L+ Y++ I G+ D + H++K ++P+++ + +I +AR L+ A
Sbjct: 269 FTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQG-LVPDDVTYTTLIGVLCKARRLDEA 327
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+++F+E+ V + NT++ + GK D L
Sbjct: 328 VELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLL 366
Score = 38.9 bits (89), Expect = 0.77, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ I+T LGR +E +I +++ D P + +I +A LE AL+V
Sbjct: 377 SVIAYNCILTCLGRKGKVEEALRIHDEMRQDA--APNLTTYNILIDMLCKAGELEAALKV 434
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLK 151
D M + + ++N +++ L KLD +F+ + K
Sbjct: 435 QDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHK 476
>gi|357140804|ref|XP_003571953.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g62370-like [Brachypodium distachyon]
Length = 926
Score = 42.4 bits (98), Expect = 0.069, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
YD II L R F E + L Q+ + ++P+E+I+ +++ Y R + A +VFDEM
Sbjct: 502 YDSIIACLCRLGHFKEAEFTLRQMI-EAGLVPDEVIYTTLLNGYSTMRHTKAACRVFDEM 560
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDR 140
+Q + L+N L+ K+ +
Sbjct: 561 LERGLQPGSHAYGALINGLVKDNKIRK 587
>gi|255660920|gb|ACU25629.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
Length = 484
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
++LH K + ALQ F+ E L F +N + II LGRA + + I
Sbjct: 17 NVLHGSKTSEHALQFFRW-------VERSNL--FEHNRETHLKIIEILGRASKLNHARCI 67
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L + E++ + +I YG+ +++ ++++F +M V+RT+KS + L +L
Sbjct: 68 LLDMPKKGLEWDEDM-WVLMIDSYGKEGIVQESVKLFQKMEELGVERTIKSYDALFKVIL 126
Query: 134 TCGKLDRMKELF 145
G+ K F
Sbjct: 127 RRGRFMMAKRYF 138
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD--- 139
+ P+ I + +I+ Y R + ++ A + F EM N++ TV + TL+ ++ ++D
Sbjct: 181 ISPDVITYNTMINGYYRVKKMDEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 140 RMKELFISFNLKAIAV-----LDGLCSNLKI 165
R+ E + +K A+ L GLC+ K+
Sbjct: 241 RLVEEMKGYGIKPNAITYSTLLPGLCNAEKM 271
>gi|255685336|gb|ACU28157.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685338|gb|ACU28158.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685340|gb|ACU28159.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685342|gb|ACU28160.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685344|gb|ACU28161.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685346|gb|ACU28162.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685348|gb|ACU28163.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685350|gb|ACU28164.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685352|gb|ACU28165.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685354|gb|ACU28166.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685356|gb|ACU28167.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685358|gb|ACU28168.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685360|gb|ACU28169.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685362|gb|ACU28170.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685364|gb|ACU28171.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685366|gb|ACU28172.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685368|gb|ACU28173.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685370|gb|ACU28174.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685372|gb|ACU28175.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685374|gb|ACU28176.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685376|gb|ACU28177.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685378|gb|ACU28178.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685380|gb|ACU28179.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685382|gb|ACU28180.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685384|gb|ACU28181.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685386|gb|ACU28182.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685388|gb|ACU28183.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685390|gb|ACU28184.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685392|gb|ACU28185.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685394|gb|ACU28186.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685396|gb|ACU28187.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685398|gb|ACU28188.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685400|gb|ACU28189.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685402|gb|ACU28190.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685404|gb|ACU28191.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685406|gb|ACU28192.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685408|gb|ACU28193.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685410|gb|ACU28194.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685412|gb|ACU28195.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685414|gb|ACU28196.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685416|gb|ACU28197.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685418|gb|ACU28198.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685420|gb|ACU28199.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685422|gb|ACU28200.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685424|gb|ACU28201.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685426|gb|ACU28202.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685428|gb|ACU28203.1| At3g62980-like protein [Arabidopsis thaliana]
Length = 176
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 92 NVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+V++ Y +A L++ A ++FDEMP +R V S + L+N + CGK +LF
Sbjct: 28 SVVNAYAKAGLIDDARKLFDEMP----ERNVISWSCLINGYVMCGKYKEALDLF 77
>gi|79568177|ref|NP_181166.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206301|sp|Q9SJN2.1|PP187_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g36240
gi|4510352|gb|AAD21441.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330254126|gb|AEC09220.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 497
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+ ++ ++ D+ + ++ + R P+ F +I+ Y R+ + AL +
Sbjct: 192 NVGVYNTVVNGYVKSGDMDKALRFYQRMGKE-RAKPDVCTFNILINGYCRSSKFDLALDL 250
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLD-------RMKELFISFNLKAIAVL-DGLCS 161
F EM + V S NTL+ L+ GK++ M EL F+ +L DGLC
Sbjct: 251 FREMKEKGCEPNVVSFNTLIRGFLSSGKIEEGVKMAYEMIELGCRFSEATCEILVDGLCR 310
Query: 162 NLKI 165
++
Sbjct: 311 EGRV 314
>gi|326517954|dbj|BAK07229.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 549
Score = 42.4 bits (98), Expect = 0.070, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +++ LG+A E I +++ D P+ + ++I GRA LE A V
Sbjct: 333 NVITYTIVMHALGKAGRTQEALDIFDKVRGDG-CAPDASFYNSLIYILGRAGRLEDANSV 391
Query: 110 FDEMPSFNVQRTVKSLNTLLNA 131
D+M V+ TV + NTL++A
Sbjct: 392 VDKMRMTGVRPTVATFNTLISA 413
>gi|255660910|gb|ACU25624.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
Length = 484
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
++LH K + ALQ F+ E L F +N + II LGRA + + I
Sbjct: 17 NVLHSAKTSEHALQFFRW-------VERSNL--FEHNRETHLKIIEILGRASKLNHARCI 67
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L + E++ + +I YG+ +++ ++++F +M V+RT+KS + L +L
Sbjct: 68 LLDMPKKGLEWDEDM-WVMMIDSYGKQGIVQESVKLFQKMEELGVERTIKSYDALFKVIL 126
Query: 134 TCGKLDRMKELF 145
G+ K F
Sbjct: 127 RRGRYMMAKRYF 138
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD--- 139
+ P+ + + +I+ Y R + E A + F EM N++ TV + TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTMINGYYRVKKXEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 140 RMKELFISFNLKAIAV-----LDGLCSNLKI 165
R+ E F +K A+ L GLC+ K+
Sbjct: 241 RLVEEMKGFGIKPNAIXYSTLLPGLCNAEKM 271
>gi|297737325|emb|CBI26526.3| unnamed protein product [Vitis vinifera]
Length = 1005
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLK-HDTRVIPEEIIFCNVISFYGRARLLEHALQVFDE 112
Y+ +I+ GR + D+ ++ ++ + V +E + N+IS+YG+A A +F E
Sbjct: 751 YNTMISVYGRGRKLDKAVEMFNKARCSGVGVSLDEKTYTNLISYYGKAGKSHEASLLFRE 810
Query: 113 MPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
M ++ S N ++N T G +ELF
Sbjct: 811 MQEEGIKPGKVSYNIMINVYATAGLHHEAQELF 843
>gi|255574497|ref|XP_002528160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532417|gb|EEF34211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 569
Score = 42.4 bits (98), Expect = 0.070, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+ +++ ++L+I GR ++ + +L + R IP E + ++ Y + LLE A
Sbjct: 144 FQSDVMIFNLVIDAYGRKSLYKMAETTYFELI-EARCIPTEDTYALLLKAYCTSGLLEKA 202
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+F EM + + + N ++ L+ G R E+F
Sbjct: 203 EAIFAEMRKYGLPPSAIVYNAYIDGLMKAGNPQRAVEIF 241
Score = 39.3 bits (90), Expect = 0.56, Method: Composition-based stats.
Identities = 21/99 (21%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 46 PFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEH 105
P+ ++ Y+++I GRA F++M+ + L + P+ + + + + Y R +L
Sbjct: 458 PYATDISTYNILINIYGRAGFFEKMEGLFQSLAAKN-LKPDVVTWTSRLGAYSRKKLYTK 516
Query: 106 ALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
L++F+EM ++ LL+ +C D+++++
Sbjct: 517 CLEIFEEMIDAGCHPDGRTAKVLLS---SCSSEDQIEQV 552
>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Vitis vinifera]
Length = 819
Score = 42.4 bits (98), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I L + K + +++ ++ D RV P I + +I Y + LE A + + M
Sbjct: 220 YNVVIGGLCKEKRMKDAEKLFDEM-LDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERM 278
Query: 114 PSFNVQRTVKSLNTLLNAL 132
NV+ T+ + N+LLN L
Sbjct: 279 KVENVEPTIITFNSLLNGL 297
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+ +I + +E I ++K + V P I F ++++ RA+++E A +V
Sbjct: 251 NRITYNTLIDGYCKVGQLEEAFNIRERMKVEN-VEPTIITFNSLLNGLCRAQMMEEAQRV 309
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNL 163
+EM + + TL + L CG +D L K + +LD CS L
Sbjct: 310 LEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQILDYTCSIL 363
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 40 EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR 99
EA L+P N + Y+ ++ K K +E ++ + ++ + V+P + +I YGR
Sbjct: 419 EAVGLRP---NHVTYNSLVKKFCEMKNMEEAEKCIKKMV-EKGVLPNVETYNTLIDGYGR 474
Query: 100 ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNAL 132
+ L + Q+ +EM ++ V S L+N L
Sbjct: 475 SCLFDRCFQILEEMEKKGLKPNVISYGCLINCL 507
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Query: 38 DTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFY 97
+ E LKP N++ Y +I L + E + IL + H V+P I+ +I
Sbjct: 487 EMEKKGLKP---NVISYGCLINCLCKDANILEAEVILGDMVHRG-VVPNAQIYNMLIDGS 542
Query: 98 GRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA 154
A L+ A + FDEM + + T+ + N L+N L GK+ + L K ++
Sbjct: 543 CIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLS 599
>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Vitis vinifera]
Length = 609
Score = 42.4 bits (98), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 29 FKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEI 88
F+ D +A P +++ Y+ II +A + +L ++ R+ P EI
Sbjct: 245 FQKAGDVVEDMKAWGFSP---SVITYNTIIDGYCKAGKMFKADALLKEMVA-KRIHPNEI 300
Query: 89 IFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDR 140
F +I + R + A +VF+EM +Q V + N+L+N L + GKLD
Sbjct: 301 TFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDE 352
>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 794
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 11/126 (8%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I ++KM DE + ++ H ++P+ + + +++ ++ + + + DEM
Sbjct: 590 YTILINGFCKSKMVDEALNLFKEM-HQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEM 648
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLCSNLKI 165
V + N+L++ L G LD+ LF + I +LDGLC +
Sbjct: 649 RDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGR- 707
Query: 166 IMNDSQ 171
+ D+Q
Sbjct: 708 -LKDAQ 712
>gi|302143548|emb|CBI22109.3| unnamed protein product [Vitis vinifera]
Length = 386
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 66 MFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSL 125
+FD M+ + + P+ I + V+ F GRA L+ L F M N+ + S
Sbjct: 224 IFDHMKSL--------KCKPDLITYNTVLGFLGRAGRLDEMLHEFSSMKVANIAPDIISY 275
Query: 126 NTLLNALLTCGKLD 139
NTLLN+L G+LD
Sbjct: 276 NTLLNSLQKVGRLD 289
Score = 35.8 bits (81), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 89 IFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF 148
I +I + R +E +L +FD M S + + + NT+L L G+LD M F S
Sbjct: 204 ILNRIIHAFAECRQIEKSLIIFDHMKSLKCKPDLITYNTVLGFLGRAGRLDEMLHEFSSM 263
Query: 149 NLKAIA 154
+ IA
Sbjct: 264 KVANIA 269
>gi|168033824|ref|XP_001769414.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679334|gb|EDQ65783.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 410
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+ ++ +FD QIL ++K +P I + +I+ GR+ L+ A+++
Sbjct: 135 NDITYNCMVNACVCLSLFDTASQILKEMKA-VNCLPNVISYTTMINSLGRSGRLDEAVEL 193
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFIS 147
F+EM + N+LL A G+ ++ LF+
Sbjct: 194 FEEMKELGRSPNSWTYNSLLKAYAREGRYEKAMCLFVG 231
Score = 35.8 bits (81), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 40 EAPPLKPFRYNLLHYDLIITKLG-RAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYG 98
EA K N+L Y+ +I RA ++ + ++K V P +I + +++
Sbjct: 89 EAMKEKGCSPNVLTYNTLINACTKRAYRLPDLVGLFEEMKQ-AGVQPNDITYNCMVNACV 147
Query: 99 RARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
L + A Q+ EM + N V S T++N+L G+LD ELF
Sbjct: 148 CLSLFDTASQILKEMKAVNCLPNVISYTTMINSLGRSGRLDEAVELF 194
>gi|225454795|ref|XP_002274101.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27270-like [Vitis vinifera]
Length = 1071
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLK-HDTRVIPEEIIFCNVISFYGRARLLEHALQVFDE 112
Y+ +I+ GR + D+ ++ ++ + V +E + N+IS+YG+A A +F E
Sbjct: 817 YNTMISVYGRGRKLDKAVEMFNKARCSGVGVSLDEKTYTNLISYYGKAGKSHEASLLFRE 876
Query: 113 MPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
M ++ S N ++N T G +ELF
Sbjct: 877 MQEEGIKPGKVSYNIMINVYATAGLHHEAQELF 909
>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Glycine max]
Length = 903
Score = 42.4 bits (98), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 9/124 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
NL Y+ +I L + D+ ++L+ + P I + +I + R+ L+ A+
Sbjct: 364 NLFVYNALINSLCKGGDLDK-AELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISY 422
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLCS 161
FD M + TV + N+L+N G L + LFI K + +++ G C
Sbjct: 423 FDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCK 482
Query: 162 NLKI 165
+L++
Sbjct: 483 DLQV 486
>gi|255660926|gb|ACU25632.1| pentatricopeptide repeat-containing protein [Neosparton
ephedroides]
Length = 484
Score = 42.4 bits (98), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
++LH K+ + ALQ F+ E L F +N + II LGRA + + I
Sbjct: 17 NVLHGAKNSEHALQFFRW-------VERSNL--FEHNRETHLKIIEILGRASKLNHARCI 67
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L + E++ + +I YG+ +++ ++++F +M V+RT+KS + L ++
Sbjct: 68 LLDMPKKGLEWDEDM-WVLMIDSYGKEGIVQESVKLFQKMEELGVERTIKSYDALFKVIM 126
Query: 134 TCGKLDRMKELF 145
G+ K F
Sbjct: 127 RRGRFMMAKRYF 138
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD--- 139
+ P+ I + +I+ Y R + +E A + F EM N++ TV + TL+ ++ ++D
Sbjct: 181 ISPDVITYNTMINGYCRVKKMEEAEKYFVEMKGKNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 140 RMKELFISFNLKAIAV-----LDGLCSNLKI 165
R+ E + +K A+ L GLC+ K+
Sbjct: 241 RLVEEMKGYGIKPNAITYSTLLPGLCNAEKM 271
>gi|255580475|ref|XP_002531063.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529358|gb|EEF31324.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 42.4 bits (98), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 11/122 (9%)
Query: 12 LASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQ 71
L L L LAL FK A K F YN Y+ +I LG+ K F+ +
Sbjct: 117 LEVLKRLSNAGALALSFFK---------WAEKQKGFMYNTESYNALIDSLGKIKQFNMIW 167
Query: 72 QILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA 131
+++ +K + E F + Y R+ ++ A+ F++M F ++ N LL+
Sbjct: 168 NLVNDMKRKGVLTKE--TFALISRRYARSGKVKEAMNTFEKMEKFGLKIESTDFNRLLDT 225
Query: 132 LL 133
L+
Sbjct: 226 LI 227
Score = 39.7 bits (91), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 60/130 (46%), Gaps = 9/130 (6%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLL 103
++ F ++ Y +++ G+ K ++ ++ ++K D P+ + + +I+ Y + R
Sbjct: 244 IRRFVPDIKSYTILLEGWGQEKNLLKLDEVYREMK-DEGFEPDVVTYGILINAYCKVRKY 302
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AV 155
+ A+++F EM S N Q + TL+N L + +L E F AV
Sbjct: 303 DDAIELFREMESKNCQPSPHIFCTLINGLGSVRRLSEALEFFRRSKASGFAPETPTYNAV 362
Query: 156 LDGLCSNLKI 165
+ C +++I
Sbjct: 363 VGAYCWSMRI 372
>gi|145476181|ref|XP_001424113.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124391176|emb|CAK56715.1| unnamed protein product [Paramecium tetraurelia]
Length = 337
Score = 42.4 bits (98), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 72 QILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA 131
Q+L+++K + +EI + +I GR + L A+ +F+EM ++ S N+LL++
Sbjct: 180 QLLNEMKQSQSIQLDEITYNTLIKGCGRKKRLNEAISLFEEMKQIGIKPNRISFNSLLDS 239
Query: 132 LLTCGKLD 139
+ C K++
Sbjct: 240 CVKCNKMN 247
>gi|359493285|ref|XP_003634559.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
mitochondrial-like [Vitis vinifera]
Length = 993
Score = 42.4 bits (98), Expect = 0.075, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMK 142
++ + + +C +I+ Y R +E AL++FDE ++ +V ++ L G +D
Sbjct: 394 LVADSVTYCTMINGYCRVSRIEEALEIFDEFRKTSIS-SVSCYKCMIYGLCRKGMVDMAI 452
Query: 143 ELFISFNLKAIAVLDGLCSNL 163
E+FI N K + ++ G ++L
Sbjct: 453 EVFIELNEKGLELVSGTYTSL 473
>gi|255569835|ref|XP_002525881.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534795|gb|EEF36485.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 913
Score = 42.4 bits (98), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y K G +FD + I ++K DT + P+ I + +I Y + L A+ VFDEM
Sbjct: 705 YSAANAKGGNEDIFDALA-IWTEMK-DTEIKPDVIFYTVLIDGYCKVDSLHDAIGVFDEM 762
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA 154
++ + + LL+ G +DR L +LK I+
Sbjct: 763 IERGLEPDIITYTALLSGCCQRGDVDRAVNLLDQMSLKGIS 803
>gi|356504195|ref|XP_003520884.1| PREDICTED: conserved oligomeric Golgi complex subunit 4-like
[Glycine max]
Length = 1114
Score = 42.4 bits (98), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 60/127 (47%), Gaps = 10/127 (7%)
Query: 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMF 67
SP R+ L+ Q P LA ++F A FR+ Y +++ KLGR+K F
Sbjct: 58 SPTRVQKLIASQSDPLLAKEIFD---------LASRQPKFRHTYSSYLILLLKLGRSKHF 108
Query: 68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNT 127
+ +L +LK D+ I +F +I Y A L + AL F + FN + K LN
Sbjct: 109 SLLDDLLRRLKFDSHPIT-PTLFTYLIKVYAEADLPDKALNSFYTILHFNCKPLPKHLNR 167
Query: 128 LLNALLT 134
+L L++
Sbjct: 168 ILEVLVS 174
>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
Length = 577
Score = 42.4 bits (98), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 29 FKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEI 88
F+ D +A P +++ Y+ II +A + +L ++ R+ P EI
Sbjct: 245 FQKAGDVVEDMKAWGFSP---SVITYNTIIDGYCKAGKMFKADALLKEMVA-KRIHPNEI 300
Query: 89 IFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDR 140
F +I + R + A +VF+EM +Q V + N+L+N L + GKLD
Sbjct: 301 TFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDE 352
>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Vitis vinifera]
Length = 898
Score = 42.4 bits (98), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I G A FDE +L + K IP I + +++ G+ R +E AL++F+EM
Sbjct: 338 YNTMIMGYGSAGKFDEAYGLLERQKAKGS-IPSVIAYNCILTCLGKKRRVEEALRIFEEM 396
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
V V + N L++ L GKL+ E+
Sbjct: 397 KRDAVP-NVPTYNILIDMLCREGKLNAALEI 426
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/91 (19%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y++ I G+A D + H++K ++P+++ + ++I +A L+ A+++
Sbjct: 264 DIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHG-LMPDDVTYTSMIGVLCKANRLDEAVEL 322
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDR 140
F+++ + NT++ + GK D
Sbjct: 323 FEQLEQNRKVPCAYAYNTMIMGYGSAGKFDE 353
Score = 35.8 bits (81), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 56/118 (47%), Gaps = 10/118 (8%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ I+T LG+ + +E +I ++K D +P + +I R L AL++
Sbjct: 369 SVIAYNCILTCLGKKRRVEEALRIFEEMKRDA--VPNVPTYNILIDMLCREGKLNAALEI 426
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGL 159
D+M + V ++N +++ L KL+ +F + K +++DGL
Sbjct: 427 RDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGL 484
>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
gi|224033903|gb|ACN36027.1| unknown [Zea mays]
Length = 655
Score = 42.4 bits (98), Expect = 0.076, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 61/125 (48%), Gaps = 17/125 (13%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N++ ++ +I+ L R +F+ + ++L Q+ + P+ ++ +I + LE A ++
Sbjct: 261 NIVTFNTLISYLCRNGLFERVHEVLAQMV-EHGCTPDIRMYATIIDGICKEGHLEVAHEI 319
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF------------ISFNLKAIAVLD 157
+ MPS+ ++ V NTLL L + + + +EL ++FN+ ++D
Sbjct: 320 LNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNI----LVD 375
Query: 158 GLCSN 162
C N
Sbjct: 376 FFCQN 380
Score = 37.0 bits (84), Expect = 3.0, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y +I LG+A DE ++L+ + + + P II+ ++ S R + +Q+
Sbjct: 506 DLISYSTVIDGLGKAGKTDEALELLNVMVNKG-MSPNTIIYSSIASALSREGRINKVIQM 564
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
FD + ++ N ++++L G+ +R E
Sbjct: 565 FDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFL 600
>gi|356528212|ref|XP_003532699.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37230-like [Glycine max]
Length = 738
Score = 42.4 bits (98), Expect = 0.077, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 15/133 (11%)
Query: 9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAP--PLKPFRYNLLHYDLIITKLGRAKM 66
P + ++LH P+ ALQ ++ T P LK I+ LGR
Sbjct: 86 PSLVYNVLHGAASPEHALQFYRWVERAGLFTHTPETTLK-----------IVQILGRYSK 134
Query: 67 FDEMQQILHQLKHD--TRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKS 124
+ + IL +R E F ++I YGRA +++ ++++F +M V RTVKS
Sbjct: 135 LNHARCILFDDTRGGASRATVTEDAFVSLIDSYGRAGIVQESVKLFKKMKELGVDRTVKS 194
Query: 125 LNTLLNALLTCGK 137
+ L +L G+
Sbjct: 195 YDALFKVILRRGR 207
Score = 37.7 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I R K +E +++ ++K ++P I F ++ Y A ++ AL+V
Sbjct: 261 DVVTYNTLINGYFRFKKVEEAEKLFVEMK-GRDIVPNVISFTTMLKGYVAAGQIDDALKV 319
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F+EM V+ + +TLL L K+ +++
Sbjct: 320 FEEMKGCGVKPNAVTFSTLLPGLCDAEKMAEARDVL 355
>gi|302791627|ref|XP_002977580.1| hypothetical protein SELMODRAFT_107283 [Selaginella moellendorffii]
gi|300154950|gb|EFJ21584.1| hypothetical protein SELMODRAFT_107283 [Selaginella moellendorffii]
Length = 555
Score = 42.4 bits (98), Expect = 0.077, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 25/133 (18%)
Query: 26 LQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAK-------MFDEMQQILHQLK 78
L+LF+ D E +KP N++ ++ +I LGRA MFDEM + L+
Sbjct: 150 LRLFR-------DMEQAEIKP---NVVLFNTLIGTLGRAGKVTLAKGMFDEMAT--YGLE 197
Query: 79 HDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKL 138
P EI +I Y + L+ AL V+D + + V NTLL + + G +
Sbjct: 198 ------PSEITLSILIDMYTKVGALDKALDVYDTIKQKKWKLDVLVYNTLLKSCVESGNI 251
Query: 139 DRMKELFISFNLK 151
R + L ++
Sbjct: 252 QRAESLIAEMEME 264
>gi|29367150|gb|AAO72718.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 532
Score = 42.4 bits (98), Expect = 0.077, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
P++ IF +I +GRARL++ + V D + F ++ ++K N++L+ L+ +D +E
Sbjct: 9 PDDAIFVTIIRGFGRARLIKRVISVVDLVSKFGIKPSLKVFNSILDVLVK-EDIDIAREF 67
Query: 145 F 145
F
Sbjct: 68 F 68
>gi|115466680|ref|NP_001056939.1| Os06g0172000 [Oryza sativa Japonica Group]
gi|55773690|dbj|BAD72273.1| putative PPR2 [Oryza sativa Japonica Group]
gi|113594979|dbj|BAF18853.1| Os06g0172000 [Oryza sativa Japonica Group]
gi|215697063|dbj|BAG91057.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218197679|gb|EEC80106.1| hypothetical protein OsI_21852 [Oryza sativa Indica Group]
gi|222635046|gb|EEE65178.1| hypothetical protein OsJ_20289 [Oryza sativa Japonica Group]
Length = 511
Score = 42.4 bits (98), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
+ + ++ Y+++I GRA ++M+ I +K + R+ P + C+++ YGRA ++
Sbjct: 367 YSWTIVTYNVVIDAFGRAGDLEQMEYIFRLMKSE-RIKPNCVTLCSLVRAYGRAGDVKKI 425
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
V + + ++ + N L++A G L M ++
Sbjct: 426 KTVLRIVENSDITLDIVFFNCLVDAFGRVGCLAEMWDVL 464
>gi|356561685|ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 477
Score = 42.4 bits (98), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 9/125 (7%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLL 103
LK ++ ++++I LG+ DE + ++KH + P + + ++I + L
Sbjct: 296 LKNINPDVYTFNILIDALGKEGKIDEAISLFEEMKHKN-MFPNIVTYTSLIDGLCKNHHL 354
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AV 155
E A+ + +M +Q V S LL+AL G+L+ K+ F +K +
Sbjct: 355 ERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVM 414
Query: 156 LDGLC 160
++GLC
Sbjct: 415 INGLC 419
>gi|297803282|ref|XP_002869525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315361|gb|EFH45784.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 707
Score = 42.4 bits (98), Expect = 0.079, Method: Composition-based stats.
Identities = 24/107 (22%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F +N+ +Y++++ L R F + +L +++ ++ ++P+ + + VI + + LE A
Sbjct: 138 FAFNVYNYNILLKGLCRNLEFGKAVSLLREMRQNS-LMPDVVSYNTVIRGFCEGKELEKA 196
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153
LQ+ +EM ++ + L++A GK+D L K +
Sbjct: 197 LQLANEMQGSGCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGL 243
>gi|255660924|gb|ACU25631.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
Length = 484
Score = 42.4 bits (98), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
++LH K+ + ALQ F+ E L F +N + II LGRA + + I
Sbjct: 17 NVLHGAKNSEHALQFFRW-------VERSNL--FEHNRETHLKIIEILGRASKLNHARCI 67
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L + E++ + +I YG+ +++ ++++F +M V+RT+KS + L ++
Sbjct: 68 LLDMPKKGLEWDEDM-WVLMIDSYGKEGIVQESVKLFQKMEELGVERTIKSYDALFKVIM 126
Query: 134 TCGKLDRMKELF 145
G+ K F
Sbjct: 127 RRGRFMMAKRYF 138
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD--- 139
+ P+ I + +I+ Y R + +E A + F EM N++ TV + TL+ ++ ++D
Sbjct: 181 ISPDVITYNTMINGYYRVKKMEEAEKYFVEMKGKNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 140 RMKELFISFNLKAIAV-----LDGLCSNLKI 165
R+ E + +K A+ L GLC+ K+
Sbjct: 241 RLVEEMKGYGIKPNAITYSTLLPGLCNAEKM 271
>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 901
Score = 42.4 bits (98), Expect = 0.079, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N++ +++I +L +AK DE I + H P+E+ FC++I G+ ++ A ++
Sbjct: 441 NVMTVNIMIDRLCKAKKLDEACSIFEGMNHKI-CSPDEVTFCSLIDGLGKQGRVDDAYRL 499
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+++M + +L+ + CG+ + ++F
Sbjct: 500 YEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIF 535
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 22/107 (20%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 44 LKPFRYNLLHYDLIITKL-----GRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYG 98
L + N LH D+++ + G+A D + H++K ++P+++ + ++I
Sbjct: 256 LDEMKSNCLHADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHG-LLPDDVTYTSMIGVLC 314
Query: 99 RARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ L+ A+++F++M + NT++ + GK D L
Sbjct: 315 KGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLL 361
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 10/120 (8%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I G A FDE +L + K IP I + +++ G+ L AL+ F+EM
Sbjct: 341 YNTMIMGYGSAGKFDEAYSLLERQKARG-CIPSVIAYNCILTCLGKKGRLGEALRTFEEM 399
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKL-------DRMKELFISFNLKAIAVL-DGLCSNLKI 165
+ + + N L++ L G++ D MKE + N+ + ++ D LC K+
Sbjct: 400 KK-DAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKL 458
>gi|414586334|tpg|DAA36905.1| TPA: hypothetical protein ZEAMMB73_204717 [Zea mays]
Length = 239
Score = 42.4 bits (98), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 60/128 (46%), Gaps = 13/128 (10%)
Query: 20 KHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKH 79
K PK A++ F+ + + T + +NLL + LG+A MF+ M + +K
Sbjct: 64 KRPKSAVRFFRWAGQSVSHT------AYAWNLL-----VDILGKAAMFEPMWDAIRSMKQ 112
Query: 80 D-TRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTC-GK 137
+ + F +V + Y A ++ A+ D M + ++ +LN+LL+A+ G+
Sbjct: 113 EGGGGLVSVATFASVFASYCAAGNIKDAIAALDVMDRYGLKHDAVALNSLLSAICRVEGR 172
Query: 138 LDRMKELF 145
+++F
Sbjct: 173 AQDAQDVF 180
>gi|145524846|ref|XP_001448245.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124415789|emb|CAK80848.1| unnamed protein product [Paramecium tetraurelia]
Length = 967
Score = 42.4 bits (98), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 72 QILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA 131
Q+L+++K + +EI + +I GR + L A+ +F+EM ++ S N+LL++
Sbjct: 394 QLLNEMKQSQSIQLDEITYNTLIKGCGRKKRLNEAISLFEEMKQIGIKPNRISFNSLLDS 453
Query: 132 LLTCGKLD 139
+ C K++
Sbjct: 454 CVKCNKMN 461
>gi|297823431|ref|XP_002879598.1| hypothetical protein ARALYDRAFT_902735 [Arabidopsis lyrata subsp.
lyrata]
gi|297325437|gb|EFH55857.1| hypothetical protein ARALYDRAFT_902735 [Arabidopsis lyrata subsp.
lyrata]
Length = 497
Score = 42.4 bits (98), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+ ++ ++ D+ + ++ + R P+ F +I+ Y R+ + AL +
Sbjct: 192 NVGVYNTVVNGYVKSGDMDKALRFYQRMGKE-RAKPDVCTFNTLINGYCRSSKFDLALDL 250
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLD-------RMKELFISFNLKAIAVL-DGLCS 161
F EM + V S NTL+ L+ GK++ M E+ F+ +L DGLC
Sbjct: 251 FREMKEKGCEPNVVSFNTLIRGFLSRGKIEEGIKMAYEMIEIGCRFSEATCEILVDGLCR 310
Query: 162 NLKI 165
++
Sbjct: 311 EGRV 314
>gi|449453081|ref|XP_004144287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Cucumis sativus]
gi|449489420|ref|XP_004158306.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Cucumis sativus]
Length = 720
Score = 42.4 bits (98), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 72 QILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA 131
++L ++K ++ V P+ + +I +G+ L+HA++ +D M S ++ V + NTL++
Sbjct: 442 EVLREMK-NSNVKPDRHFYNVMIDTFGKFNCLDHAMETYDRMLSEGIEPDVVTWNTLIDC 500
Query: 132 LLTCGKLDRMKELF 145
G DR ELF
Sbjct: 501 HRKHGYHDRAAELF 514
Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/106 (20%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I LG + +DE++ +L +++ ++P + + ++ YG + A+ + M
Sbjct: 529 YNIMINSLGEQEKWDEVKILLGKMQSQG-LLPNVVTYTTLVDIYGHSGRFNDAIDCLEAM 587
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGL 159
S ++ + N L+NA G ++ + N + + DGL
Sbjct: 588 KSAGLKPSATMYNALINAFAQRGLSEQ------AVNAYRVMISDGL 627
>gi|357450985|ref|XP_003595769.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484817|gb|AES66020.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 497
Score = 42.4 bits (98), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ II LG+ K F+E+ Q+L ++ I EE FC +I + A LE A+ +F
Sbjct: 134 YNEIINILGKMKCFEELHQVLDEMSQRKEFINEE-TFCILIRRFVAAHKLEEAINIFYRR 192
Query: 114 PSFNVQRTV--KSLNTLLNALLTCGKLDRMKELF 145
F + + K+ TLL + ++ + LF
Sbjct: 193 EEFGLDNELDSKAFRTLLMWMCRYKHIEEAETLF 226
>gi|225446837|ref|XP_002279448.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11900-like [Vitis vinifera]
Length = 357
Score = 42.4 bits (98), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 66 MFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSL 125
+FD M+ + + P+ I + V+ F GRA L+ L F M N+ + S
Sbjct: 195 IFDHMKSL--------KCKPDLITYNTVLGFLGRAGRLDEMLHEFSSMKVANIAPDIISY 246
Query: 126 NTLLNALLTCGKLD 139
NTLLN+L G+LD
Sbjct: 247 NTLLNSLQKVGRLD 260
Score = 35.8 bits (81), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 89 IFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF 148
I +I + R +E +L +FD M S + + + NT+L L G+LD M F S
Sbjct: 175 ILNRIIHAFAECRQIEKSLIIFDHMKSLKCKPDLITYNTVLGFLGRAGRLDEMLHEFSSM 234
Query: 149 NLKAIA 154
+ IA
Sbjct: 235 KVANIA 240
>gi|255660932|gb|ACU25635.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
venustus]
Length = 484
Score = 42.4 bits (98), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD--- 139
+ P+ I + +I+ Y R + +E A + F EM N++ TV + TL+ ++ ++D
Sbjct: 181 ITPDVITYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 140 RMKELFISFNLKAIAV-----LDGLCSNLKI 165
R+ E + +KA A+ L GLC+ K+
Sbjct: 241 RLVEEMKGYGIKANAITYSTLLPGLCNAEKM 271
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
++LH K+ + ALQ F+ E L F++N + II LGRA + + I
Sbjct: 17 NVLHGAKNSEHALQFFRW-------VERSNL--FQHNRETHLKIIEILGRASKLNHARCI 67
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L + E++ + +I YG +++ ++++F +M V+RT+KS + L +
Sbjct: 68 LLDMPKKGLEWDEDM-WVLMIDSYGNGGIVQESVKLFQKMDELGVERTIKSYDALFKVIS 126
Query: 134 TCGKLDRMKELF 145
G+ K F
Sbjct: 127 RRGRYMMAKRYF 138
>gi|212275714|ref|NP_001130387.1| uncharacterized protein LOC100191483 [Zea mays]
gi|194689000|gb|ACF78584.1| unknown [Zea mays]
gi|414865541|tpg|DAA44098.1| TPA: hypothetical protein ZEAMMB73_448674 [Zea mays]
Length = 691
Score = 42.4 bits (98), Expect = 0.082, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
R NL+ Y+ ++ +GRA + + + +H+ D +V P +C ++ Y RAR E A+
Sbjct: 301 RPNLVVYNTMLDAMGRA-LRPWVVKTIHREMVDQQVQPSRATYCCLLHAYTRARYGEDAM 359
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
V+ M + V N LL+ G +D +E+F
Sbjct: 360 AVYRLMKDEAMGIDVMLYNMLLSMCADIGYVDEAEEIF 397
>gi|147789026|emb|CAN75781.1| hypothetical protein VITISV_012425 [Vitis vinifera]
Length = 993
Score = 42.4 bits (98), Expect = 0.082, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMK 142
++ + + +C +I+ Y R +E AL++FDE ++ +V ++ L G +D
Sbjct: 394 LVADSVTYCTMINGYCRVXRIEEALEIFDEFRKTSIS-SVSCYKCMIYGLCRKGMVDMAI 452
Query: 143 ELFISFNLKAIAVLDGLCSNL 163
E+FI N K + ++ G ++L
Sbjct: 453 EVFIELNEKGLELVSGTYTSL 473
>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 556
Score = 42.4 bits (98), Expect = 0.083, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 9/119 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ ++T L R D ++LHQLK D P I + VI +A E AL++
Sbjct: 361 DIVSYNTLLTALCRGGEVDAAVELLHQLK-DKGCTPVLISYNTVIDGLTKAGKTEEALEL 419
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLC 160
+EM + +Q + + +T+ + L G+++ + F I A+L GLC
Sbjct: 420 LNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLC 478
>gi|242061542|ref|XP_002452060.1| hypothetical protein SORBIDRAFT_04g017840 [Sorghum bicolor]
gi|241931891|gb|EES05036.1| hypothetical protein SORBIDRAFT_04g017840 [Sorghum bicolor]
Length = 674
Score = 42.4 bits (98), Expect = 0.083, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 60/127 (47%), Gaps = 17/127 (13%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARL 102
P+ P Y Y+ ++ L AK ++E ++++ ++ + P E+ F I + + L
Sbjct: 214 PVAPDTYT---YNTVLKGLCFAKQWEEAEELMREMIRNN-CHPNEVTFATQIRAFCQNGL 269
Query: 103 LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF---------ISFNLKAI 153
L+ A+++ ++MP + V +TL+N G++D +L + +N
Sbjct: 270 LDRAVELLEQMPKYGCMPDVVIYSTLVNGFSEHGRVDDALKLLSTMLCRPNTVCYN---- 325
Query: 154 AVLDGLC 160
A L GLC
Sbjct: 326 AALKGLC 332
Score = 40.0 bits (92), Expect = 0.32, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 14/124 (11%)
Query: 46 PFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEH 105
P R ++ Y+ + L A +D+ +++ + +P E+ F +I+ + L+
Sbjct: 520 PCRADIFSYNATLKGLCMAARWDDAGELIADMV-TKDCLPNEVTFNILINSLCQKGLVNR 578
Query: 106 ALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF---------ISFNLKAIAVL 156
A++V+++MP + + + + N L+N G LD + IS+N ++L
Sbjct: 579 AIEVYEQMPKYGITPDIFTYNALINGYSEQGCLDDALKFLSTMPCEPDTISYN----SIL 634
Query: 157 DGLC 160
GLC
Sbjct: 635 KGLC 638
>gi|359480144|ref|XP_002269420.2| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
chloroplastic-like [Vitis vinifera]
gi|297744374|emb|CBI37344.3| unnamed protein product [Vitis vinifera]
Length = 497
Score = 42.4 bits (98), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 37 NDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISF 96
+D +KP N + Y+ +I G+AK F EM+ L ++ + + P+ + +
Sbjct: 233 SDMANQGIKP---NTVTYNTLIDAYGKAKRFAEMESTLLEMLREGKCEPDVWTMNSTLRA 289
Query: 97 YGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRM 141
+G + +E + +++ S ++ +K+ N LL++ K ++M
Sbjct: 290 FGSSGQIETMEKCYEKFQSAGIEPNIKTFNILLDSYGKAEKYEKM 334
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F + ++ Y+++I GRA +M+ L +L R+ P + C+++ YGRA E
Sbjct: 346 FSWTIVTYNVVIDAFGRAGDLKQME-YLFRLMRSERIKPSCVTLCSLVRAYGRAGKAEKI 404
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMK 142
V + + +V + N L++A G MK
Sbjct: 405 GGVLRFIENSDVMLDIVFFNCLVDAYGRLGCFAEMK 440
>gi|15237442|ref|NP_199458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170604|sp|Q9FHF9.1|PP419_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g46460, mitochondrial; Flags: Precursor
gi|10177583|dbj|BAB10814.1| unnamed protein product [Arabidopsis thaliana]
gi|332008005|gb|AED95388.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 697
Score = 42.0 bits (97), Expect = 0.083, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 64 AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVK 123
++ DE +++ +Q+ P ++ +I+ Y R+ L AL +FDEMP R V
Sbjct: 48 SRRIDEAREVFNQVPS-----PHVSLYTKMITGYTRSNRLVDALNLFDEMPV----RDVV 98
Query: 124 SLNTLLNALLTCGKLDRMKELF 145
S N++++ + CG ++ +LF
Sbjct: 99 SWNSMISGCVECGDMNTAVKLF 120
>gi|356544625|ref|XP_003540749.1| PREDICTED: pentatricopeptide repeat-containing protein At2g27800,
mitochondrial-like [Glycine max]
Length = 438
Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 60 KLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFN-- 117
KLG AKM+ EM I++QL +I E +F VI ++ +AR L A+ VF M S
Sbjct: 145 KLGAAKMYQEMDDIVNQLL-AVPLIGSEALFNMVIYYFTQARKLTRAVNVFKHMKSRRNL 203
Query: 118 ---VQRTVKSLNTLLNALLTCGKLDRMKELFI 146
+ ++++ N L A L G + +++
Sbjct: 204 NCFFRPSIRTYNILFAAFLGRGSNSYINHVYM 235
>gi|255661202|gb|ACU25770.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
Length = 426
Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y+ +I G+AK+F E + ++ +++ V+P+ + +C +++ Y + AL +
Sbjct: 78 DLVAYNSMINVFGKAKLFREARALVSEMR-TAGVMPDTVSYCTLLTMYVENQKFLEALSL 136
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFIS 147
F EM + + N +++ G +LF S
Sbjct: 137 FSEMREIQCSFDLTTCNIMIDVYGQLGMAKEADKLFWS 174
>gi|168052517|ref|XP_001778696.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669911|gb|EDQ56489.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 799
Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
NL+ ++ ++ A ++ +++LH + + R+ P + C++ + RAR E V
Sbjct: 369 NLVTFNGLMDAYASAGKYERARELLHDMA-EARIEPNVVTICSLFAACARARCPEKVRDV 427
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F E + V + N + A + G+ D K L
Sbjct: 428 FHEAKVRQIALNVPAFNAAITAYIEAGQFDEAKALL 463
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVF 110
++ ++ ++ M+ E Q++ L + P+ + + ++++ +G+A E A +VF
Sbjct: 300 IVTFNTLLGAYASQGMYTEALQVVGLLVK-AKFEPDVVSYSSLLNAFGKAGYPEKAQEVF 358
Query: 111 DEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
D M + + + + N L++A + GK +R +EL
Sbjct: 359 DLMKQRSRKPNLVTFNGLMDAYASAGKYERARELL 393
>gi|10177016|dbj|BAB10204.1| maize crp1 protein-like [Arabidopsis thaliana]
Length = 680
Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I G + +D+M+++L ++K ++P + ++ YG++ A++ +EM
Sbjct: 488 YNIMINSYGDQERWDDMKRLLGKMKSQG-ILPNVVTHTTLVDVYGKSGRFNDAIECLEEM 546
Query: 114 PSFNVQRTVKSLNTLLNALLTCG 136
S ++ + N L+NA G
Sbjct: 547 KSVGLKPSSTMYNALINAYAQRG 569
>gi|255660930|gb|ACU25634.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
Length = 484
Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 20/137 (14%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDL-----IITKLGRAKMFD 68
++LH K+ + ALQ F+ R NLL ++ II LGRA +
Sbjct: 17 NVLHGAKNAEHALQFFRWVE--------------RSNLLEHNREIHLKIIEILGRASKLN 62
Query: 69 EMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTL 128
+ IL + E++ + +I YG+A +++ ++++F +M V+RT+KS + L
Sbjct: 63 HARCILLDMPKKGLEWDEDM-WVMMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDAL 121
Query: 129 LNALLTCGKLDRMKELF 145
+ G+ K F
Sbjct: 122 FKVISRRGRYMMSKRYF 138
Score = 36.2 bits (82), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/108 (19%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I R K +E ++ ++K + ++ P + + +I Y ++ AL++
Sbjct: 184 DVITYNTMINGYNRVKKMEEAEKYFLEMK-ERKIDPTVVTYTTLIKGYASVDRVDDALRL 242
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLD 157
+EM ++ + +TLL L K+ + + K +A D
Sbjct: 243 VEEMKGLGIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYVAPTD 290
>gi|302786806|ref|XP_002975174.1| hypothetical protein SELMODRAFT_10825 [Selaginella moellendorffii]
gi|300157333|gb|EFJ23959.1| hypothetical protein SELMODRAFT_10825 [Selaginella moellendorffii]
Length = 555
Score = 42.0 bits (97), Expect = 0.085, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 25/126 (19%)
Query: 26 LQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAK-------MFDEMQQILHQLK 78
L+LF+ D E +KP N++ ++ +I LGRA MFDEM + L+
Sbjct: 154 LRLFR-------DMEQAEIKP---NVVLFNTLIGTLGRAGKVTLAKGMFDEMAS--YGLE 201
Query: 79 HDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKL 138
P EI +I Y + L+ AL V+D + + V NTLL + + G +
Sbjct: 202 ------PSEITLSILIDMYTKVGALDKALDVYDTIKQKKWKLDVLVYNTLLKSCVESGNI 255
Query: 139 DRMKEL 144
R + L
Sbjct: 256 QRAESL 261
Score = 36.6 bits (83), Expect = 3.6, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 65 KMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKS 124
++F +M+Q + P ++F +I GRA + A +FDEM S+ ++ + +
Sbjct: 155 RLFRDMEQ--------AEIKPNVVLFNTLIGTLGRAGKVTLAKGMFDEMASYGLEPSEIT 206
Query: 125 LNTLLNALLTCGKLDRMKELFISFNLK 151
L+ L++ G LD+ +++ + K
Sbjct: 207 LSILIDMYTKVGALDKALDVYDTIKQK 233
>gi|242054943|ref|XP_002456617.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
gi|241928592|gb|EES01737.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
Length = 410
Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 37 NDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISF 96
N +A L+P +++ Y+ +I RA+ + +K + R+ P ++ + +I
Sbjct: 202 NQMKAAGLQP---SVVTYNELIGGFCRARDIAHAIRAFSDMK-ERRLAPTKVTYTILIGA 257
Query: 97 YGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153
+ + ++ A ++ EM ++ V+S LL+AL GK+ ++LF S + K +
Sbjct: 258 FAKENEMDRAFEMLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDSKGV 314
>gi|302761794|ref|XP_002964319.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
gi|300168048|gb|EFJ34652.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
Length = 384
Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
NL+ Y +I + A + +++ ++K D P + +I YGR L + AL++
Sbjct: 87 NLVTYTNLIKEYANAGRLQDCRKLFQEMK-DKGESPNSWTYNALIQGYGRKGLFKEALEL 145
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153
+DEM + V + N + G L+ M+ L + K +
Sbjct: 146 YDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTKGV 189
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
+R N+ Y+++++ + + E Q+ LK V+P + + ++S YGR L A
Sbjct: 224 YRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKG-VVPNIVTYSAMLSLYGRHGLYTEA 282
Query: 107 LQVFDEM 113
+++DEM
Sbjct: 283 AKLWDEM 289
>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 506
Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+L+I L E ++I++ L + R+IP+ + + +IS ++ AL +
Sbjct: 364 SIVTYNLLIKGLCNQSQISEAEEIINSLS-NHRLIPDAVSYNTLISACCYRGNIDKALDL 422
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
M + ++ TV++ + L++ L G+L+ M+ L+
Sbjct: 423 QQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLY 458
Score = 39.3 bits (90), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
Query: 52 LHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFD 111
+ Y+ +I L +A+ Q +L +++ D V P F +I YGR LE V
Sbjct: 226 ITYNALINGLCKAERITNAQDLLMEMQ-DNGVNPTVETFNTLIDAYGRTGQLEKCFIVLS 284
Query: 112 EMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLD 157
EM ++ V S +++NA GK+ +A+A+LD
Sbjct: 285 EMQENGLKPNVVSYGSIVNAFCKNGKIP-----------EAVAILD 319
>gi|154344901|ref|XP_001568392.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065729|emb|CAM43503.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 990
Score = 42.0 bits (97), Expect = 0.085, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 5/106 (4%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP-EEIIFCNVISFYGRARLLEH 105
F N + Y+++ GRAK F+ + +++ + K R IP EE + +++ Y RAR+
Sbjct: 716 FHENAVTYNILFEGYGRAKRFEHLLELVEERKE--RGIPMEEFGYVVLLNTYARARMPTE 773
Query: 106 ALQVFDEMPS-FNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNL 150
A + DEM S NV + + L T+ + G +++M+ +IS L
Sbjct: 774 AEALVDEMVSGSNVVLSSRLLATVASTFSQIGNVEQMQR-YISLLL 818
>gi|356574297|ref|XP_003555285.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Glycine max]
Length = 794
Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
FR + + Y+ ++ G+++ E ++L Q++ ++ P + + +++S Y R LLE A
Sbjct: 281 FRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESNS-FRPSVVTYNSLVSAYVRGGLLEDA 339
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
L + +M ++ V + TLL+ + GK + E+F
Sbjct: 340 LVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVF 378
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 59/127 (46%), Gaps = 11/127 (8%)
Query: 19 QKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLK 78
+ PK A+++ K N+ FR +++ Y+ +++ R + ++ +L +
Sbjct: 298 SRRPKEAMEVLKQMESNS----------FRPSVVTYNSLVSAYVRGGLLED-ALVLKRKM 346
Query: 79 HDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKL 138
D + P+ + ++S + A E A++VF+EM + + + N L+ GK
Sbjct: 347 VDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALIKMYGDRGKF 406
Query: 139 DRMKELF 145
+ M ++F
Sbjct: 407 EEMVKVF 413
>gi|255660916|gb|ACU25627.1| pentatricopeptide repeat-containing protein [Lantana canescens]
Length = 484
Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
++LH K + ALQ F+ E L F +N + II LGRA + + I
Sbjct: 17 NVLHGAKTSEHALQFFRW-------VERSNL--FEHNRDTHLKIIEILGRALKLNHARCI 67
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L + E++ + +I YG+A +++ ++++F +M V+RT+KS + L ++
Sbjct: 68 LLDMPKKGLEWDEDM-WVLMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVIM 126
Query: 134 TCGKLDRMKELF 145
G+ K F
Sbjct: 127 RRGRFMMAKRYF 138
Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I R K DE ++ ++K + P + + +I Y ++ AL++
Sbjct: 184 DVVTYNTMINGCYRVKKMDEAEKYFVEMK-GRNIEPTVVSYTTLIKGYVSVDQVDDALRL 242
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLD 157
+EM + ++ + +TLL L GK+ + + K IA D
Sbjct: 243 VEEMKGYGIKPNAITYSTLLPGLCDAGKMSEAQSILKEMVDKYIAPKD 290
>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 546
Score = 42.0 bits (97), Expect = 0.086, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 64/124 (51%), Gaps = 12/124 (9%)
Query: 50 NLLHYDLII---TKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
N++ Y+ +I K+G+ + IL +++ D + P E+ F +I + + + + A
Sbjct: 197 NVITYNTLIDGYCKMGKIGKMYKADAILKEMRADG-ICPNEVTFNILIDGFCKDKNVSAA 255
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDR---MKELFISFNLKA-----IAVLDG 158
++VF EM V+ V + N+L+N L GK++ +++ ++ LK A+L+G
Sbjct: 256 MKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNG 315
Query: 159 LCSN 162
C N
Sbjct: 316 FCKN 319
>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 528
Score = 42.0 bits (97), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
+ F+ +++ Y++++ L A +++ H++ D P+ + +++ G++ +E
Sbjct: 199 RGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDG-CSPDSYTYSTLVNGLGKSGRVE 257
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA 152
A +VF EM V + + N+LL L G +DR+ +L + K
Sbjct: 258 EAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKG 305
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 9/120 (7%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I GR+ D ++ ++K P+E + +++ G+A ++ A FD M
Sbjct: 103 YNVLIRYFGRSGQLDSAMEMFREMKIKGSE-PDEYTYGFLVNALGKAGRVQEARSFFDAM 161
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA--------VLDGLCSNLKI 165
+ + + N L++A G+LD LF + +LD LCS ++
Sbjct: 162 LERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRV 221
>gi|125600186|gb|EAZ39762.1| hypothetical protein OsJ_24200 [Oryza sativa Japonica Group]
Length = 875
Score = 42.0 bits (97), Expect = 0.087, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 34/66 (51%)
Query: 82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRM 141
R+ + + +I YG+A L+ A+ +F MP + V + NTL+N +CG +
Sbjct: 120 RIPKLAVTYNTMIDLYGKAGKLKDAMDMFMGMPDYGVAADTCTFNTLINIFGSCGNVKEA 179
Query: 142 KELFIS 147
+ LF S
Sbjct: 180 EALFAS 185
Score = 40.0 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 37 NDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILH--QLKHDTRVIPEEIIFCNVI 94
N+ +A ++P N++ Y ++I ++++ LH L ++ + P +I+ ++I
Sbjct: 427 NEMKASGVEP---NVVVYGVLIDTFAET---GQLEEALHYNNLMEESGIAPNQIVLTSLI 480
Query: 95 SFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
Y +A + A ++ M S + + + N++LN G + ++KE+F
Sbjct: 481 KAYSKANCWKEAQDLYSRMKSMDGGPDIVASNSMLNLYANLGMVTKVKEIF 531
>gi|449475590|ref|XP_004154496.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g09040, mitochondrial-like [Cucumis sativus]
Length = 974
Score = 42.0 bits (97), Expect = 0.088, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 46 PFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEH 105
P R N++ ++ +I L + +E +I Q++ + +IP+E+ F V+S A +
Sbjct: 776 PRRNNVISWNSMIVGLAKNGYAEEALEIFKQMEQQS-IIPDEVTFLGVLSACSHAGRVSE 834
Query: 106 ALQVFDEM-PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVL 156
+VFD M ++ +Q V L +++ L G L+ +E KA +L
Sbjct: 835 GRKVFDLMVNNYKLQPRVDHLGCMVDILGRWGFLNEAEEFINKLGCKADPML 886
>gi|224078640|ref|XP_002305587.1| predicted protein [Populus trichocarpa]
gi|222848551|gb|EEE86098.1| predicted protein [Populus trichocarpa]
Length = 359
Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 73/150 (48%), Gaps = 20/150 (13%)
Query: 8 SPFRLA-SLLHLQKHPKLALQLFKNPN--PNANDTEAPPLKPFRYNLLHYDLIITKLGRA 64
S R+A S L + +P+ L++ ++ + P AN + + + + I KL ++
Sbjct: 34 SKTRVALSRLKTETNPEKILEICRSASLTPEAN-----------IDRITFSVAIDKLAKS 82
Query: 65 KMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFN------V 118
F + ++L +L+ + E + I +G+A +++HA+++F E N
Sbjct: 83 NNFSYIDELLTELRTSRPDLRTEQFAAHSIVLFGKAGMIDHAIRLFKEYHEKNQNGVVLS 142
Query: 119 QRTVKSLNTLLNALLTCGKLDRMKELFISF 148
+VK LN+LL + + K + +K +F+ F
Sbjct: 143 SGSVKLLNSLLYSCILAKKYNEVKRVFVDF 172
>gi|225432159|ref|XP_002274904.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic [Vitis vinifera]
Length = 498
Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 47/95 (49%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N + +++++ G+A FDEM+++L + T P+ ++S +G +E +
Sbjct: 249 NTVTQNIVLSGYGKAGKFDEMEKVLSGMLESTSSKPDVWTMNTILSLFGNKGQIEIMEKW 308
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
+++ +F ++ ++ N L+ A D+M +
Sbjct: 309 YEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSV 343
>gi|302833221|ref|XP_002948174.1| hypothetical protein VOLCADRAFT_116752 [Volvox carteri f.
nagariensis]
gi|300266394|gb|EFJ50581.1| hypothetical protein VOLCADRAFT_116752 [Volvox carteri f.
nagariensis]
Length = 1001
Score = 42.0 bits (97), Expect = 0.089, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT--RVIPEEIIFCNVISFYGRA 100
PL + LH+DL ++LG+ + E+ L + R + + + IS
Sbjct: 100 PLPEVIFRALHHDL--SRLGKDRRAMELFDWLRSANERSPLRALCDVYSYTATISLCIHG 157
Query: 101 RLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKL 138
+ ++ AL++ EM S N++R V + L+N + CGKL
Sbjct: 158 QDVDRALELMQEMRSRNIERNVHTYTALMNVCIKCGKL 195
>gi|255660922|gb|ACU25630.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
Length = 484
Score = 42.0 bits (97), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
++LH K+ + ALQ F+ E L F +N + II LGRA + + I
Sbjct: 17 NVLHGAKNAEHALQFFRW-------VERSNL--FEHNRETHLKIIEILGRASKLNHARCI 67
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L + ++ + +I YG+A +++ ++++F +M V+RT+KS + L +L
Sbjct: 68 LLDMPKKGLEWDXDM-WVLMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVIL 126
Query: 134 TCGKLDRMKELF 145
G+ K F
Sbjct: 127 RRGRYMMAKRYF 138
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD--- 139
+ P+ I + +I+ Y R + +E A + F EM N++ V + TL+ ++ ++D
Sbjct: 181 ISPDVITYNTMINGYYRVKKMEEAEKYFVEMKGKNIEPNVVTYTTLIKGYVSVDQVDDAL 240
Query: 140 RMKELFISFNLKAIAV-----LDGLCSNLKI 165
R+ E + +K A+ L GLC+ K+
Sbjct: 241 RLVEEMKGYGIKPNAITYSTLLPGLCNAEKM 271
>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
Length = 924
Score = 42.0 bits (97), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 12/127 (9%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLL 103
LKP +++ Y+ +I A DE ++L + + P + + ++ Y +A +
Sbjct: 641 LKP---DVISYNTLIDGHCFASRMDEAVKLLDGMVS-AGLKPNIVSYNTLLHGYCKAGRI 696
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFI----SFNLKAIA----V 155
++A +F EM V V++ NT+LN L G+ +EL++ S L +I +
Sbjct: 697 DNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSII 756
Query: 156 LDGLCSN 162
LDG C N
Sbjct: 757 LDGFCKN 763
Score = 40.0 bits (92), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 57/119 (47%), Gaps = 9/119 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ II L +A+ D + + Q+ + V P + + +I +A+ ++ A V
Sbjct: 224 DVVTYNTIIDGLCKAQEVDRAEDVFQQMV-EKGVKPNNVTYNTIIDGLCKAQEVDMAEGV 282
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLC 160
F +M V+ + + NT+++ L +DR + +F + + ++DGLC
Sbjct: 283 FQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLC 341
Score = 38.5 bits (88), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 64/138 (46%), Gaps = 13/138 (9%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQL--KHDTRVIPEEIIFCNVISFYGRA 100
P R ++ Y+ ++ L + +E +++LH + D+ P+ + + VI+ +
Sbjct: 147 PEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFNE 206
Query: 101 RLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI------- 153
++ A +F EM V V + NT+++ L ++DR +++F K +
Sbjct: 207 GQVDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTY 263
Query: 154 -AVLDGLCSNLKIIMNDS 170
++DGLC ++ M +
Sbjct: 264 NTIIDGLCKAQEVDMAEG 281
>gi|7362769|emb|CAB83139.1| putative protein [Arabidopsis thaliana]
Length = 558
Score = 42.0 bits (97), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 92 NVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+V++ Y +A L++ A ++FDEMP +R V S + L+N + CGK +LF
Sbjct: 133 SVVNAYAKAGLIDDARKLFDEMP----ERNVISWSCLINGYVMCGKYKEALDLF 182
>gi|125546973|gb|EAY92795.1| hypothetical protein OsI_14599 [Oryza sativa Indica Group]
Length = 530
Score = 42.0 bits (97), Expect = 0.093, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 72 QILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA 131
+++H L + ++P+ + +I YG + L + +VFD+MPS R+ + N +L+
Sbjct: 135 KMIHALVVTSGIVPDVFVSTELIRVYGESGELPVSRRVFDDMPS----RSTITWNAMLHQ 190
Query: 132 LLTCGKLDRMKELFISFNLKAI----AVLDGLC 160
GK+D E+F++ + + VL G C
Sbjct: 191 YARHGKVDTAYEMFLAMPRRDVVSWNTVLAGYC 223
>gi|90265157|emb|CAH67783.1| H0201G08.10 [Oryza sativa Indica Group]
Length = 530
Score = 42.0 bits (97), Expect = 0.093, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 72 QILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA 131
+++H L + ++P+ + +I YG + L + +VFD+MPS R+ + N +L+
Sbjct: 135 KMIHALVVTSGIVPDVFVSTELIRVYGESGELPVSRRVFDDMPS----RSTITWNAMLHQ 190
Query: 132 LLTCGKLDRMKELFISFNLKAI----AVLDGLC 160
GK+D E+F++ + + VL G C
Sbjct: 191 YARHGKVDTAYEMFLAMPRRDVVSWNTVLAGYC 223
>gi|15238925|ref|NP_199046.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75154282|sp|Q8L844.1|PP413_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g42310, mitochondrial; Flags: Precursor
gi|21539517|gb|AAM53311.1| maize crp1 protein-like [Arabidopsis thaliana]
gi|332007411|gb|AED94794.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 709
Score = 42.0 bits (97), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I G + +D+M+++L ++K ++P + ++ YG++ A++ +EM
Sbjct: 517 YNIMINSYGDQERWDDMKRLLGKMKSQG-ILPNVVTHTTLVDVYGKSGRFNDAIECLEEM 575
Query: 114 PSFNVQRTVKSLNTLLNALLTCG 136
S ++ + N L+NA G
Sbjct: 576 KSVGLKPSSTMYNALINAYAQRG 598
>gi|297795313|ref|XP_002865541.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311376|gb|EFH41800.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 711
Score = 42.0 bits (97), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I G + +D+M+++L ++K ++P + ++ YG++ A++ +EM
Sbjct: 519 YNIMINSYGDQERWDDMKRLLGKMKSQG-ILPNVVTHTTLVDVYGKSGRFNDAIECLEEM 577
Query: 114 PSFNVQRTVKSLNTLLNALLTCG 136
S ++ + N L+NA G
Sbjct: 578 KSVGLKPSSTMYNALINAYAQRG 600
>gi|225427240|ref|XP_002278451.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
chloroplastic [Vitis vinifera]
Length = 723
Score = 42.0 bits (97), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 23/114 (20%), Positives = 51/114 (44%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+ + Y+ +++ + +E +++ +K P+ + +++ YG ++ A+Q+
Sbjct: 408 DFILYNTLLSMCADLGLEEEAEKLFEDMKKSEHCRPDSWSYTAMLNIYGSGGNVDRAMQL 467
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNL 163
FDEM VQ V L L ++D + ++F + + D LC L
Sbjct: 468 FDEMSELGVQINVMGCTCLSQCLGRARRIDDLVKVFEVSLERGVKPDDRLCGCL 521
>gi|449460167|ref|XP_004147817.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like [Cucumis sativus]
Length = 942
Score = 42.0 bits (97), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 10/123 (8%)
Query: 46 PFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEH 105
P N++ Y++ IT L ++K D++++IL L P+ +C++I +
Sbjct: 742 PISNNIV-YNIAITGLCKSKNIDDVRRILSDLLLKG-FCPDNYTYCSLIHACSAVGKVNE 799
Query: 106 ALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA--------VLD 157
A + D+M + + + N L+N L G LDR + LF K ++ ++D
Sbjct: 800 AFCLRDDMINAGLVPNIVVYNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTYNTLID 859
Query: 158 GLC 160
G C
Sbjct: 860 GYC 862
>gi|22093673|dbj|BAC06967.1| crp1-like protein [Oryza sativa Japonica Group]
gi|50510048|dbj|BAD30673.1| crp1-like protein [Oryza sativa Japonica Group]
Length = 912
Score = 42.0 bits (97), Expect = 0.094, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 34/66 (51%)
Query: 82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRM 141
R+ + + +I YG+A L+ A+ +F MP + V + NTL+N +CG +
Sbjct: 260 RIPKLAVTYNTMIDLYGKAGKLKDAMDMFMGMPDYGVAADTCTFNTLINIFGSCGNVKEA 319
Query: 142 KELFIS 147
+ LF S
Sbjct: 320 EALFAS 325
Score = 40.0 bits (92), Expect = 0.39, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 37 NDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILH--QLKHDTRVIPEEIIFCNVI 94
N+ +A ++P N++ Y ++I ++++ LH L ++ + P +I+ ++I
Sbjct: 567 NEMKASGVEP---NVVVYGVLIDTFAET---GQLEEALHYNNLMEESGIAPNQIVLTSLI 620
Query: 95 SFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
Y +A + A ++ M S + + + N++LN G + ++KE+F
Sbjct: 621 KAYSKANCWKEAQDLYSRMKSMDGGPDIVASNSMLNLYANLGMVTKVKEIF 671
>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
Group]
gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
Length = 796
Score = 42.0 bits (97), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I L R + E L++L + ++P+E + +I Y + LE+A + ++M
Sbjct: 527 YNTLIKGLCRMERLKEAIDKLNELV-EKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKM 585
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAV 155
+ + V + NTL+N L GKLD+ +LF S+ K V
Sbjct: 586 VENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKV 627
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
K + + + ++ L + K +++ +++LH +P+E+ + V++ Y + E
Sbjct: 448 KGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRG-FVPDEVSYGTVMAAYFKEYNPE 506
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN 149
AL+++D+M + ++ + NTL+ L +++R+KE N
Sbjct: 507 PALRLWDQMIERKLIPSISTYNTLIKGLC---RMERLKEAIDKLN 548
>gi|356569072|ref|XP_003552730.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14190,
chloroplastic-like [Glycine max]
Length = 509
Score = 42.0 bits (97), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
YD ++ G+ +M+DEM + + +++ + P+ I + +I Y RA LL+ +++ M
Sbjct: 210 YDGLLGAYGKFQMYDEMGECVKKMELEG-CSPDHITYNILIQEYARAGLLQRMEKLYQRM 268
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
S + +L +L A T G +++M+ +
Sbjct: 269 VSKRMHVQSSTLVAMLEAYTTFGMVEKMENFY 300
>gi|413950564|gb|AFW83213.1| hypothetical protein ZEAMMB73_277915 [Zea mays]
Length = 611
Score = 42.0 bits (97), Expect = 0.096, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 89 IFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF 148
+ +++ YG+ +E A VFD MP +RTV S NT+L A + G++D +LF
Sbjct: 212 VMSSLVDLYGKCGEVEDARAVFDAMP----ERTVVSWNTMLMAYIHNGRIDEAVDLFYEM 267
Query: 149 NLKAI 153
++ +
Sbjct: 268 RVEGV 272
>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
Length = 692
Score = 42.0 bits (97), Expect = 0.097, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 61/125 (48%), Gaps = 17/125 (13%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N++ ++ +I+ L R +F+ + ++L Q+ + P+ ++ +I + LE A ++
Sbjct: 298 NIVTFNTLISYLCRNGLFERVHEVLAQMV-EHGCTPDIRMYATIIDGICKEGHLEVAHEI 356
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF------------ISFNLKAIAVLD 157
+ MPS+ ++ V NTLL L + + + +EL ++FN+ ++D
Sbjct: 357 LNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNI----LVD 412
Query: 158 GLCSN 162
C N
Sbjct: 413 FFCQN 417
Score = 37.0 bits (84), Expect = 3.3, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y +I LG+A DE ++L+ + + + P II+ ++ S R + +Q+
Sbjct: 543 DLISYSTVIDGLGKAGKTDEALELLNVMVNKG-MSPNTIIYSSIASALSREGRINKVIQM 601
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
FD + ++ N ++++L G+ +R E
Sbjct: 602 FDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFL 637
>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
Length = 707
Score = 42.0 bits (97), Expect = 0.097, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
++ Y+++I L +A D+ ++LH++ D V P+ + F +++ +A E A +
Sbjct: 9 DVFTYNILIDGLCKASKTDKASEMLHEMV-DRGVTPDTVTFNSIMDGLCKAGKFERAHSL 67
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF-------NLKAIAVL-DGLCS 161
M N + + + NTL++ L +DR K L F ++ ++L DGLC
Sbjct: 68 LAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCK 127
Query: 162 NLKI 165
+I
Sbjct: 128 RGRI 131
>gi|297736801|emb|CBI26002.3| unnamed protein product [Vitis vinifera]
Length = 469
Score = 42.0 bits (97), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 47/95 (49%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N + +++++ G+A FDEM+++L + T P+ ++S +G +E +
Sbjct: 249 NTVTQNIVLSGYGKAGKFDEMEKVLSGMLESTSSKPDVWTMNTILSLFGNKGQIEIMEKW 308
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
+++ +F ++ ++ N L+ A D+M +
Sbjct: 309 YEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSV 343
>gi|255660872|gb|ACU25605.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
Length = 484
Score = 42.0 bits (97), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F +N + II LGRA + + IL + E++ + +I YG+ +++ +
Sbjct: 41 FEHNRETHLKIIEILGRASKLNHARCILLDMPKKGLEWDEDM-WVMMIDSYGKEGIVQES 99
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+++F +M V+RT+KS N L +L G+ K F
Sbjct: 100 VKMFQKMEELXVERTIKSYNALFKVILRRGRYMMAKRYF 138
>gi|222635128|gb|EEE65260.1| hypothetical protein OsJ_20463 [Oryza sativa Japonica Group]
Length = 1443
Score = 42.0 bits (97), Expect = 0.098, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 57 IITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSF 116
+I G+ K++ + + + LK ++ V + I+ +I Y + L EHA +FD M
Sbjct: 754 MIEAYGKLKLWQQAENFVKGLKQESGV--DRRIWNALIHAYAESGLYEHARAIFDIMIKK 811
Query: 117 NVQRTVKSLNTLLNALLTCGKLDRM 141
TV+S+N ++ AL+ G+LD +
Sbjct: 812 GPLPTVESVNGMMRALIVDGRLDEL 836
>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 634
Score = 42.0 bits (97), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 9/116 (7%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L D Q++ Q+ D V P+ + + ++ LE AL+VFD M
Sbjct: 438 YTTLIQGLFHDGDCDNAQKVFKQMVSDG-VPPDIMTYSILLDGLCNNGKLEKALEVFDYM 496
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLCS 161
++ + T++ + GK+D +LF S +LK + ++ GLCS
Sbjct: 497 QKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCS 552
>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
Length = 851
Score = 42.0 bits (97), Expect = 0.098, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
K + NL+ Y++II L R E +IL ++ + P+E+ + +++ Y +
Sbjct: 74 KGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKG-FTPDEVTYNTLLNGYCKEGNFH 132
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153
AL + EM V +V + L+N++ L+R E F ++ +
Sbjct: 133 QALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGL 181
>gi|223947353|gb|ACN27760.1| unknown [Zea mays]
gi|413934876|gb|AFW69427.1| selenium-binding protein [Zea mays]
Length = 504
Score = 42.0 bits (97), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 93 VISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA 152
++S Y L A+QVFDEMP + TV S NT+L A G+ DR +F++ L+A
Sbjct: 149 LMSAYSACGHLHRAMQVFDEMPRW----TVVSWNTVLTACADNGRHDRCAGMFVNM-LEA 203
Query: 153 IAVLD 157
+V D
Sbjct: 204 GSVPD 208
>gi|168019209|ref|XP_001762137.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686541|gb|EDQ72929.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 513
Score = 42.0 bits (97), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+ ++ +++++ GR K + E + H +K + +P E F +++ Y R LE A
Sbjct: 97 FKPDVGCFNMLMDAYGRTKQWTEAENTFHLMKK-FQCLPTETSFNVLMAAYSRGGQLERA 155
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+V EM N + + NT L L G +++F
Sbjct: 156 ERVLHEMKESNCSPGLVTYNTYLEVLNKSGSWQLAEDVF 194
Score = 35.8 bits (81), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+ + + L+++ +A + + + +L+ V P+ +F +++ YG + ++
Sbjct: 342 FKPTMKSHILLLSAFVKAGRVTDAENFVRRLE-SMGVEPDTFMFNSLLGAYGNSGRMDKM 400
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA 152
+++ M + + +LNTL+N G ++R +E+F S K
Sbjct: 401 ESLYESMQGSVCKPDIITLNTLINVYAQGGYIERAEEIFNSLESKG 446
>gi|157867707|ref|XP_001682407.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68125861|emb|CAJ03407.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 1002
Score = 42.0 bits (97), Expect = 0.098, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
K + N + Y++++ GRAK +++M++ L Q + + ++I +C +I+ YGR+RL +
Sbjct: 768 KGYTDNNVTYNILMDGHGRAKGYEQMEE-LRQNRSAAGIPMDDITYCIMIAAYGRSRLDK 826
Query: 105 HALQVFDEM 113
++FDE+
Sbjct: 827 DVQRLFDEV 835
>gi|302808451|ref|XP_002985920.1| hypothetical protein SELMODRAFT_123132 [Selaginella moellendorffii]
gi|300146427|gb|EFJ13097.1| hypothetical protein SELMODRAFT_123132 [Selaginella moellendorffii]
Length = 574
Score = 42.0 bits (97), Expect = 0.099, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F++++ Y I+ LGRAK FD + +L ++ + P + + +I YGRA L+ +
Sbjct: 63 FKHDVHTYTTILGILGRAKSFDVLNNLLDEMIREG-CEPNVVTYNRLIHCYGRANDLDSS 121
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
L++F+ M + + TL++ G D EL+
Sbjct: 122 LKLFNVMQMVGCEPDRVTYCTLIDLQAKAGFHDAAMELY 160
>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
Length = 558
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 9/102 (8%)
Query: 68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNT 127
D Q++ Q+ D V P+ + + ++ LE AL+VFD M ++ + T
Sbjct: 376 DNAQKVFKQMVSDG-VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTT 434
Query: 128 LLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLCS 161
++ + GK+D +LF S +LK + ++ GLCS
Sbjct: 435 MIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCS 476
>gi|356540343|ref|XP_003538649.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial-like [Glycine max]
Length = 543
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 49/102 (48%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
+R++ +L++ LG+ K FD M ++ ++ + VI +AR E A
Sbjct: 154 YRHSPELCNLMVDILGKCKSFDPMSDLVEEMAKLEQGYVTLETMAKVIRRLAKARKHEDA 213
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF 148
++ F M F V + +LN L++AL+ ++ ++ + F
Sbjct: 214 IEAFRRMDKFGVNKDTAALNVLIDALVKGDSVEHAHKVVLEF 255
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N + Y ++ LG+A + ++ ++K D V + C +I G+A L+ A V
Sbjct: 332 NAVTYTTVMLHLGKAGQLSKALEVYEKMKCDGCVADTPVYSC-MIFILGKAGRLKDACDV 390
Query: 110 FDEMPSFNVQRTVKSLNTLLN 130
F++MP V R V + NT+++
Sbjct: 391 FEDMPKQGVVRDVVTYNTMIS 411
>gi|255086920|ref|XP_002505383.1| predicted protein [Micromonas sp. RCC299]
gi|226520653|gb|ACO66641.1| predicted protein [Micromonas sp. RCC299]
Length = 175
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNV-ISFYGRARLLEHALQVFDE 112
+ +I GR+ +D+ ++ +K +R + I C+ I+ G+++ E AL VF E
Sbjct: 1 FTTLIKTCGRSGGWDKALELYQAMK--SRGVAANTITCSALINACGKSKQWEKALDVFRE 58
Query: 113 MPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153
M + V+ + + + L++A +LD+ E+F + +
Sbjct: 59 MKADGVEANIFTYSALISACAKGRQLDKALEVFRECQVSGV 99
>gi|125558286|gb|EAZ03822.1| hypothetical protein OsI_25951 [Oryza sativa Indica Group]
Length = 1011
Score = 42.0 bits (97), Expect = 0.10, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 34/66 (51%)
Query: 82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRM 141
R+ + + +I YG+A L+ A+ +F MP + V + NTL+N +CG +
Sbjct: 256 RIPKLAVTYNTMIDLYGKAGKLKDAMDMFMGMPDYGVAADTCTFNTLINIFGSCGNVKEA 315
Query: 142 KELFIS 147
+ LF S
Sbjct: 316 EALFAS 321
Score = 38.5 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 37 NDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILH--QLKHDTRVIPEEIIFCNVI 94
N+ +A ++P N++ Y ++I ++++ LH L ++ + P +I+ ++I
Sbjct: 563 NEMKASGVEP---NVVVYGVLIDTFAET---GQLEEALHYNNLMEESGIAPNQIVLTSLI 616
Query: 95 SFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
Y +A + A ++ M + + + + N++LN G + ++KE+F
Sbjct: 617 KAYSKANCWKEAQDLYSRMKNMDGGPDIVASNSMLNLYANLGMVTKVKEIF 667
>gi|449449679|ref|XP_004142592.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08610-like [Cucumis sativus]
gi|449516715|ref|XP_004165392.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08610-like [Cucumis sativus]
Length = 594
Score = 42.0 bits (97), Expect = 0.10, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 19/119 (15%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNV-ISFYGRARLLEHALQVFDE 112
Y+ ++ L R +DE+ +IL + + P ++ CNV I+ + LL+ A+ ++
Sbjct: 350 YNTLLHSLSRRGHWDEVDEILKIMS--ISLQPPTVVTCNVLINGLCKNGLLDSAINFLNQ 407
Query: 113 MPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL------------FISFNLKAIAVLDGL 159
M S+N + + NTLL AL G +D +L IS+N VLDGL
Sbjct: 408 MFSYNCLPDIITYNTLLGALCKEGMVDEAFQLLHLLTDTACSPGLISYN----TVLDGL 462
>gi|297808179|ref|XP_002871973.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
gi|297317810|gb|EFH48232.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
Length = 831
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y ++T L R K F + ++ +++ + + P+ I+F +I+ + L+ A+++
Sbjct: 353 SIITYTTLVTALTRQKHFHSLLSLISKVQKNG-LRPDTILFNAIINASSESGNLDQAMKI 411
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F++M + T + NTL+ GKL+ L
Sbjct: 412 FEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLL 447
>gi|242057857|ref|XP_002458074.1| hypothetical protein SORBIDRAFT_03g026520 [Sorghum bicolor]
gi|241930049|gb|EES03194.1| hypothetical protein SORBIDRAFT_03g026520 [Sorghum bicolor]
Length = 963
Score = 42.0 bits (97), Expect = 0.10, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 61 LGRAKM--FDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNV 118
LGR + F+EM + +R P+ + F +V+S A L+E L+ F+ MP +
Sbjct: 732 LGRKALETFEEMLR--------SRESPDHVTFVSVLSACSHAGLVERGLEYFEMMPDHGI 783
Query: 119 QRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVL 156
++ + +++ L GK+D++KE +K A++
Sbjct: 784 LPQIEHYSCVIDLLGRAGKIDKIKEYIQRMPMKPNALI 821
>gi|224137392|ref|XP_002322546.1| predicted protein [Populus trichocarpa]
gi|222867176|gb|EEF04307.1| predicted protein [Populus trichocarpa]
Length = 264
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 10/112 (8%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCN-VISFYGRARLLEHALQ 108
+++ YD +I R F+ +L ++K I ++ CN +I+ R LL +
Sbjct: 41 DVVTYDTLINAYSRFVSFEAAYSVLDRMKE--ACINPDVFTCNSLIAGAMRHCLLSKCMD 98
Query: 109 VFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLC 160
+F+EM + ++ V S NTL+ GK D M N +++GLC
Sbjct: 99 LFEEMLEWRIKADVWSYNTLMRCFFKLGKPDEM-------NRTHTTLMNGLC 143
>gi|302809414|ref|XP_002986400.1| hypothetical protein SELMODRAFT_123901 [Selaginella moellendorffii]
gi|300145936|gb|EFJ12609.1| hypothetical protein SELMODRAFT_123901 [Selaginella moellendorffii]
Length = 318
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGK 137
++P+ + + +I YGRA + ALQ+F+EM NV+ + N+LL A+ T K
Sbjct: 75 LLPDTMTYSTMIDCYGRAGKVNRALQLFEEMKRKNVRLDTRVFNSLLRAVGTSYK 129
>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
Length = 653
Score = 42.0 bits (97), Expect = 0.10, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I G A FDE +L + K IP I + +++ G+ R +E AL++F+EM
Sbjct: 93 YNTMIMGYGSAGKFDEAYGLLERQKAKGS-IPSVIAYNCILTCLGKKRRVEEALRIFEEM 151
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
V V + N L++ L GKL+ E+
Sbjct: 152 KRDAVP-NVPTYNILIDMLCREGKLNAALEI 181
Score = 37.0 bits (84), Expect = 3.0, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ I+T LG+ + +E +I ++K D +P + +I R L AL++
Sbjct: 124 SVIAYNCILTCLGKKRRVEEALRIFEEMKRDA--VPNVPTYNILIDMLCREGKLNAALEI 181
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
D+M + V ++N +++ L KL+ +F
Sbjct: 182 RDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIF 217
>gi|449518887|ref|XP_004166467.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g35030, mitochondrial-like [Cucumis sativus]
Length = 649
Score = 42.0 bits (97), Expect = 0.10, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 65/139 (46%), Gaps = 34/139 (24%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKH--------------------DTRVIPEEII 89
N++ ++ +IT + + DE Q++ +++ D R++ +++
Sbjct: 190 NVVSWNTVITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDKMP 249
Query: 90 FCNVISF------YGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKE 143
NV+S+ Y + L+ A ++F++MP +R + S NT++ + GKL+R +
Sbjct: 250 VRNVVSWNTMIIGYAQNMRLDEAFKLFEQMP----ERELSSWNTMITGFIQNGKLERAVD 305
Query: 144 LFISFNLKAI----AVLDG 158
F + K + AV+ G
Sbjct: 306 FFYKMSNKNVVTWTAVISG 324
>gi|449437737|ref|XP_004136647.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Cucumis sativus]
Length = 649
Score = 42.0 bits (97), Expect = 0.10, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 65/139 (46%), Gaps = 34/139 (24%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKH--------------------DTRVIPEEII 89
N++ ++ +IT + + DE Q++ +++ D R++ +++
Sbjct: 190 NVVSWNTVITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDKMP 249
Query: 90 FCNVISF------YGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKE 143
NV+S+ Y + L+ A ++F++MP +R + S NT++ + GKL+R +
Sbjct: 250 VRNVVSWNTMIIGYAQNMRLDEAFKLFEQMP----ERELSSWNTMITGFIQNGKLERAVD 305
Query: 144 LFISFNLKAI----AVLDG 158
F + K + AV+ G
Sbjct: 306 FFYKMSNKNVVTWTAVISG 324
Score = 37.0 bits (84), Expect = 3.2, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N++ + +++ R +E +++ D + I + +I Y R ++ AL +
Sbjct: 128 NVVTWTALVSGYVRWNRIEEARRLF-----DAMPVKNVISWNTMIEGYARKGWIDQALDL 182
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F++MP +R V S NT++ A + ++D +ELF
Sbjct: 183 FEKMP----ERNVVSWNTVITAFMQRRRVDEAQELF 214
>gi|167998294|ref|XP_001751853.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696951|gb|EDQ83288.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 657
Score = 42.0 bits (97), Expect = 0.10, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
R ++ ++++ +LG+ + +D ++ + V P + +I+ G R L A
Sbjct: 169 LRVDVRSMNVVVWQLGQMRNWDAASRVFRAFR-SASVEPNAHVCTTLIAVLGYGRRLPEA 227
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
L++F M ++R + + N L+ A CG D ELF
Sbjct: 228 LKLFRWMEKQGIERPIYTFNALMVACGRCGAGDTAVELF 266
>gi|255660870|gb|ACU25604.1| pentatricopeptide repeat-containing protein [Verbena halei]
Length = 476
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F +N + II LGRA + + IL + E++ + +I YG+ +++ +
Sbjct: 33 FEHNRETHLKIIEILGRASKLNHARCILLDMPKKGLEWDEDM-WVMMIDSYGKEGIVQES 91
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+++F +M V+RT+KS N L +L G+ K F
Sbjct: 92 VKMFQKMEELGVERTIKSYNALFKVILRRGRYMMGKRYF 130
Score = 39.3 bits (90), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Query: 83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD--- 139
+ P+ + + +I+ Y R + +E A + F EM N++ TV + TL+ ++ ++D
Sbjct: 173 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 232
Query: 140 RMKELFISFNLKAIAV-----LDGLCSNLKIIMNDSQVRV 174
R+ E F K A+ L GLC+ K+ S+ RV
Sbjct: 233 RLVEEMKGFGTKPNAITYSTLLPGLCNAEKM----SEARV 268
>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 517
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 61/120 (50%), Gaps = 9/120 (7%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I + KM DE ++L ++ H ++IP + + ++I ++ + +AL++ DEM
Sbjct: 250 YSILINGFCKIKMMDEAMELLKEMHHK-QIIPNVVTYSSLIDGLCKSGKISYALKLVDEM 308
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLD-------RMKELFISFNLKAIAVL-DGLCSNLKI 165
+ + +++L+AL ++D +MK I N+ +L GLC + K+
Sbjct: 309 HDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKL 368
>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
Length = 564
Score = 42.0 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 63/128 (49%), Gaps = 12/128 (9%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKH----DTRVIPEEIIFCNVISFYGRARLLEH 105
+++ Y +++ +A DE ++LH + ++P+++ F +I+ +A E
Sbjct: 250 DVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQ 309
Query: 106 ALQVFDEMPSFNVQRTVKSLNTLLNALLTCGK-------LDRMKELFISFNLKAI-AVLD 157
A +F+EM + N+Q V + L++ L G+ LD M L + N+ A++
Sbjct: 310 ASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVH 369
Query: 158 GLCSNLKI 165
GLC + +I
Sbjct: 370 GLCKSGRI 377
Score = 38.9 bits (89), Expect = 0.89, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDT-RVIPEEIIFCNVISFYGRARLLEHALQ 108
N++ Y+ + L + M E +++ L+ + RV P+ + F +I + ++ A
Sbjct: 143 NIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACS 202
Query: 109 VFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153
VFD+M + V + N L+N L K++R + S K +
Sbjct: 203 VFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGV 247
>gi|302802939|ref|XP_002983223.1| hypothetical protein SELMODRAFT_117923 [Selaginella moellendorffii]
gi|300148908|gb|EFJ15565.1| hypothetical protein SELMODRAFT_117923 [Selaginella moellendorffii]
Length = 384
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 52/106 (49%), Gaps = 10/106 (9%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFC--NVISFYGRARLLEHAL 107
+++ + +++ + E ++I + +P+ + C +++S YG + L A
Sbjct: 160 DIVSWSIMLGAYAQTGFVGEAEEIYN-------TMPQRNLVCWNSMLSGYGESGQLSKAK 212
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153
Q+FDEMP ++ R + NT++ A +L+ LF + L+ I
Sbjct: 213 QLFDEMPERDI-RNAAAWNTMIAAYAQSSQLESAMALFDAMKLEGI 257
>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
Length = 1107
Score = 42.0 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
NL Y+ +I +AK D ++L++LK + P+ +++ I +E A V
Sbjct: 339 NLASYNALIHGFVKAKNMDRALELLNELK-GRGIKPDLLLYGTFIWGLCSLEKIEAAKVV 397
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGK-------LDRMKELFISFNLKAIAVL-DGLCS 161
+EM ++ TL++A G LD MKEL I + VL DGLC
Sbjct: 398 MNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCK 457
Query: 162 N 162
N
Sbjct: 458 N 458
>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 822
Score = 42.0 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 10/122 (8%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I G+ M DE I Q++ + V+P+ + VI+ + R L A+ F++M
Sbjct: 405 YNILIDAYGKRGMMDEAMLIFTQMQ-ERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQM 463
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI---------AVLDGLCSNLK 164
+ ++ N+L+ G L + KEL + I ++++ LC +
Sbjct: 464 IAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEGR 523
Query: 165 II 166
++
Sbjct: 524 VV 525
>gi|345293243|gb|AEN83113.1| AT5G21222-like protein, partial [Capsella rubella]
gi|345293245|gb|AEN83114.1| AT5G21222-like protein, partial [Capsella rubella]
gi|345293247|gb|AEN83115.1| AT5G21222-like protein, partial [Capsella rubella]
gi|345293249|gb|AEN83116.1| AT5G21222-like protein, partial [Capsella rubella]
gi|345293251|gb|AEN83117.1| AT5G21222-like protein, partial [Capsella rubella]
gi|345293253|gb|AEN83118.1| AT5G21222-like protein, partial [Capsella rubella]
gi|345293255|gb|AEN83119.1| AT5G21222-like protein, partial [Capsella rubella]
gi|345293257|gb|AEN83120.1| AT5G21222-like protein, partial [Capsella rubella]
Length = 160
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y ++T L R K F + ++ +++ + + P+ I+F +I+ + L+ A+++
Sbjct: 3 SIITYTTLVTALTRQKHFHSLLSLISKVEKNG-LKPDTILFNAIINASSESGNLDQAMKI 61
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F++M + T + NTL+ GKL+ L
Sbjct: 62 FEKMKESGCKPTTSTFNTLIKGYGKIGKLEESSRLL 97
>gi|295830921|gb|ADG39129.1| AT5G21222-like protein [Neslia paniculata]
Length = 166
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y ++T L R K F + ++ +++ + + P+ I+F +I+ + L+ A+++
Sbjct: 9 SIITYTTLVTALTRQKHFHSLLSLISKVEKNG-LKPDTILFNAIINASSESGNLDQAMKI 67
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F++M + T + NTL+ GKL+ L
Sbjct: 68 FEQMKESGCKPTTSTFNTLIKGYGKLGKLEESSRLL 103
>gi|255552099|ref|XP_002517094.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543729|gb|EEF45257.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 549
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
YDL++ LGR K F M +++ ++++ + + V+ RA + A++ F +
Sbjct: 168 YDLMVDILGRRKKFSFMWELVKEMENLEGYV-SLVTMKKVMRRLARAGNFQDAVEAFRGI 226
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF 148
V++ +++LN L++AL+ G ++ F+ F
Sbjct: 227 EKLGVRKDIEALNVLMDALVKEGSVEHAYSAFMEF 261
Score = 35.4 bits (80), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 26 LQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP 85
L+ F+N ++ + KP N++ Y + + LG+AK ++ ++ +K + +P
Sbjct: 317 LKDFRNVEAIFSEMQEKSCKP---NVITYTIFMHALGKAKQVNKALEVYEMMKSNC-CVP 372
Query: 86 EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLT 134
+ + ++I ++ L+ A VF++M V + + NT++ + T
Sbjct: 373 DASFYSSLIFVLTQSGRLKDAWDVFEDMKKQGVSPDLLTYNTMITSACT 421
>gi|115466932|ref|NP_001057065.1| Os06g0199100 [Oryza sativa Japonica Group]
gi|51091829|dbj|BAD36643.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113595105|dbj|BAF18979.1| Os06g0199100 [Oryza sativa Japonica Group]
Length = 1283
Score = 42.0 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 57 IITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSF 116
+I G+ K++ + + + LK ++ V + I+ +I Y + L EHA +FD M
Sbjct: 594 MIEAYGKLKLWQQAENFVKGLKQESGV--DRRIWNALIHAYAESGLYEHARAIFDIMIKK 651
Query: 117 NVQRTVKSLNTLLNALLTCGKLDRM 141
TV+S+N ++ AL+ G+LD +
Sbjct: 652 GPLPTVESVNGMMRALIVDGRLDEL 676
>gi|413936133|gb|AFW70684.1| hypothetical protein ZEAMMB73_229858 [Zea mays]
Length = 375
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/96 (20%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ ++ L A +++ ++++ ++ + R + + F +ISF+ + L+ AL+V
Sbjct: 149 DIVTYNTVLKGLCSADRWEDAEELMIKMSQNDR-LRDNSTFNTIISFWCQKGLILQALEV 207
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F +MP + +T++ L+ K+++ EL
Sbjct: 208 FKQMPEKGCNPNSTTYSTIIGGLVKASKMEQALELL 243
>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
lyrata]
gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
lyrata]
Length = 608
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 4/53 (7%)
Query: 93 VISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+I FYG L+ A +VFDEMP +R++ S N++++AL+ G+ D +LF
Sbjct: 173 LIHFYGSCGCLDLARKVFDEMP----ERSLVSWNSMIDALVRVGEYDSALQLF 221
>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
Length = 728
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 38 DTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFY 97
+ E +KP N + Y++++ + DE+ + + +++ ++ +P+ + + +IS++
Sbjct: 362 EMEGRGMKP---NSVTYNVMVKWFVKKGKMDEVDKTVRKME-ESGCLPDIVTYNTLISWH 417
Query: 98 GRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFIS 147
+ ++ A ++ DEM ++ +LNT+L AL KLD +L S
Sbjct: 418 CKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCS 467
Score = 37.0 bits (84), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 58 ITKLGRA-KMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSF 116
+ ++G+ + D++ ++L ++ ++P+EI + +I Y + +E A Q ++M
Sbjct: 522 LCQMGKTNQAIDKLDELL-----ESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEK 576
Query: 117 NVQRTVKSLNTLLNALLTCGKLDRMKELFISF 148
N + V + NTLL L G L++ +LF ++
Sbjct: 577 NFKPDVVTCNTLLCGLCKEGMLEKALKLFNTW 608
>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Cucumis sativus]
Length = 590
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 22/126 (17%)
Query: 47 FRYNLLHYDLIITKLGR----AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARL 102
F Y++L + L K GR ++FDEMQQ + P I F +I R+R
Sbjct: 294 FTYSVLIHGL--CKEGRLDVAEQLFDEMQQ--------RGLRPNGITFTALIDGQYRSRR 343
Query: 103 LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------A 154
++ A+ + +M + V+ + NTLLN L G +++ ++L + +
Sbjct: 344 MDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTT 403
Query: 155 VLDGLC 160
++DG C
Sbjct: 404 LIDGYC 409
>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Cucumis sativus]
Length = 590
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 22/126 (17%)
Query: 47 FRYNLLHYDLIITKLGR----AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARL 102
F Y++L + L K GR ++FDEMQQ + P I F +I R+R
Sbjct: 294 FTYSVLIHGL--CKEGRLDVAEQLFDEMQQ--------RGLRPNGITFTALIDGQCRSRR 343
Query: 103 LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------A 154
++ A+ + +M + V+ + NTLLN L G +++ ++L + +
Sbjct: 344 IDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTT 403
Query: 155 VLDGLC 160
++DG C
Sbjct: 404 LIDGYC 409
>gi|388513011|gb|AFK44567.1| unknown [Medicago truncatula]
Length = 348
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 57/115 (49%), Gaps = 9/115 (7%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I + K D+ + +++ H +IP + + ++I ++ + +ALQ+ D+M
Sbjct: 220 YNILINGFCKIKKVDKAMNLFNEM-HCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQM 278
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA--------VLDGLC 160
V + + N++++AL ++D+ L F + I ++DGLC
Sbjct: 279 HDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLC 333
>gi|356558657|ref|XP_003547620.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g55840-like [Glycine max]
Length = 1078
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 12/143 (8%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
K ++ Y++ I L R + +L +++ + V P EI + +IS + R +E
Sbjct: 239 KGIGVDVCTYNVFIDNLCRDSRSAKGYLLLKRMRRNM-VYPNEITYNTLISGFVREGKIE 297
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD---RMKELFISFNLK-----AIAVL 156
A +VFDEM FN+ + NTL+ T G + R+ ++ +S L+ A+L
Sbjct: 298 VATKVFDEMSLFNLLPNSITYNTLIAGHCTTGNIGEALRLMDVMVSHGLRPNEVTYGALL 357
Query: 157 DGLCSNLKIIMNDS---QVRVTG 176
+GL N + M S ++R+ G
Sbjct: 358 NGLYKNAEFGMVSSILERMRMGG 380
>gi|356540307|ref|XP_003538631.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Glycine max]
Length = 804
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 60/118 (50%), Gaps = 3/118 (2%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLL 103
L+ F + + Y+ ++ G+++ E ++L +++ + P + + ++IS Y + LL
Sbjct: 292 LEGFTPDKVTYNALLDVFGKSRRPQEAMKVLQEMEANG-FSPTSVTYNSLISAYAKGGLL 350
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCS 161
E AL + +M ++ V + TLL+ GK D ++F+ ++A+ +C+
Sbjct: 351 EEALDLKTQMVHKGIKPDVFTYTTLLSGFEKAGKDDFAIQVFL--EMRAVGCKPNICT 406
>gi|297852926|ref|XP_002894344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297340186|gb|EFH70603.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 650
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+ + Y+ + + LG+ K + + ++K D P+ + +IS +GR ++ A+ +
Sbjct: 441 DTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPS-PDIFTYNILISSFGRVGEVDEAINI 499
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLD----RMKEL 144
F+E+ + + + S N+L+N L G +D R KE+
Sbjct: 500 FEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEM 538
>gi|449455613|ref|XP_004145547.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g43820-like [Cucumis sativus]
Length = 572
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 49 YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQ 108
+N++ Y+++I R E++Q+L ++ D P+ + +I GRA ++ A++
Sbjct: 280 FNVMTYNIVIGGWSRYGRHGEVEQMLKAMELDG-FSPDCLTHTYLIECLGRANQIDDAVK 338
Query: 109 VFDEMPSFNVQRTVKSLNTLLNALLTCGKLDR 140
+FD+M V + N +++ + G D+
Sbjct: 339 IFDKMDENGCTPDVDAYNAMISNFICIGDFDQ 370
>gi|449432255|ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
gi|449480068|ref|XP_004155790.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
Length = 638
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F + + LI+ R + +E +QI H L + + +I+ Y R +E A
Sbjct: 121 FCVDKFSFSLILKACARVCLVEEGKQI-HGLLMKLEIGSNLFLLNCLIAMYLRCGDIEFA 179
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLK 151
QVFD MP +Q +V S N++++ + G +D +ELF S L+
Sbjct: 180 RQVFDRMP---IQDSV-SYNSMIDGYVKSGTIDLARELFDSMPLE 220
>gi|359490053|ref|XP_003634022.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30825,
chloroplastic-like [Vitis vinifera]
gi|297745081|emb|CBI38673.3| unnamed protein product [Vitis vinifera]
Length = 900
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F N++ Y+++IT G+A D Q I LK + + P+E + ++I +GRA + A
Sbjct: 343 FSPNIVAYNMLITGYGKASNMDAAQHIFRNLK-NVGLEPDESTYRSMIEGWGRAENYKEA 401
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLN 130
++E+ + +L T++N
Sbjct: 402 EWYYNELKRLGFKPNSSNLYTMIN 425
>gi|224126121|ref|XP_002329666.1| predicted protein [Populus trichocarpa]
gi|222870547|gb|EEF07678.1| predicted protein [Populus trichocarpa]
Length = 821
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+ I+ LG+ +EM +IL +K D P I + ++S G + ++ +V
Sbjct: 419 NVCTYNAILGMLGKKSQSEEMMKILCDMKVDG-CAPNRITWNTMLSMCGNKGMHKYVKRV 477
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCG 136
F EM S + + NTL+ A CG
Sbjct: 478 FQEMKSCGFEPDRDTFNTLITASGRCG 504
Score = 36.6 bits (83), Expect = 4.1, Method: Composition-based stats.
Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 10/107 (9%)
Query: 38 DTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFY 97
D PP + + Y+ ++ RA ++E ++ + + + P + + +I+ Y
Sbjct: 343 DNNCPP------DAVTYNELVAAYVRAGFYEEGAALIDTMTENG-IKPNAVTYTTMINAY 395
Query: 98 GRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
GRA ++ AL ++D+M V + N +L L GK + +E+
Sbjct: 396 GRAAQVDKALSLYDQMKESGCAPNVCTYNAILGML---GKKSQSEEM 439
>gi|145349220|ref|XP_001419038.1| pentatrichopeptide repeat (PPR) protein [Ostreococcus lucimarinus
CCE9901]
gi|144579268|gb|ABO97331.1| pentatrichopeptide repeat (PPR) protein [Ostreococcus lucimarinus
CCE9901]
Length = 424
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Query: 65 KMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKS 124
K+F+EM++I H+ P I F + RA AL++FDEM N+ S
Sbjct: 137 KLFEEMREIGHE--------PSVISFNVAMGACARAGDGARALKLFDEMVGQNMDVDAVS 188
Query: 125 LNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQ 171
+NT + A G R++EL + K +D + +++ +D++
Sbjct: 189 INTAMAAAELVGDEARLEELRAGSHFKRAGDVD-EPAPTRVVKDDAK 234
>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
Length = 1128
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I + + + + + ++K +IP+ + + ++I YG+ L+ + F+EM
Sbjct: 136 YNIMIDCMWKEGDIEAARGLFEEMKF-RGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEM 194
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
S + + V + N+L+N GKL + E +
Sbjct: 195 KSMSCEPDVITYNSLINCFCKSGKLPKGLEFY 226
>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
Length = 948
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 11/130 (8%)
Query: 6 PTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAK 65
P +P +L LL L ++ LF+ +A + + ++ Y L+I KLG
Sbjct: 58 PITPSQLCKLLELPLDVPTSMDLFE---------KAGLQRGYIHSFHVYYLLIDKLGNVG 108
Query: 66 MFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPS-FNVQRTVKS 124
F + ++L Q+K D + +E +F ++ +YG+A L A ++ +M + + T KS
Sbjct: 109 EFKMIDKLLKQMK-DEGCVFKESLFILIMRYYGKAGLPGQATRLLLDMWGVYCFEPTFKS 167
Query: 125 LNTLLNALLT 134
N +L L+
Sbjct: 168 YNVVLEILVA 177
>gi|297719671|ref|NP_001172197.1| Os01g0167750 [Oryza sativa Japonica Group]
gi|55296867|dbj|BAD68304.1| hypothetical protein [Oryza sativa Japonica Group]
gi|55297506|dbj|BAD68308.1| hypothetical protein [Oryza sativa Japonica Group]
gi|255672907|dbj|BAH90927.1| Os01g0167750 [Oryza sativa Japonica Group]
Length = 628
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 84 IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKE 143
+P + VI A ++ A++VF +PS +RT + N L AL + GK D+++
Sbjct: 167 LPNARTYTVVIEHLASAGFVDQAVEVFRLLPSLRARRTTRQYNVLAEALASAGKFDQLRW 226
Query: 144 LFISFNLKAIAVLDGL 159
L ++ + +DG+
Sbjct: 227 L-----VREMVAVDGV 237
>gi|295830913|gb|ADG39125.1| AT5G21222-like protein [Capsella grandiflora]
Length = 166
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y ++T L R K F + ++ +++ + + P+ I+F +I+ + L+ A+++
Sbjct: 9 SIITYTTLVTALTRQKHFHSLLSLISKVEKNG-LKPDTILFNAIINASSESGNLDQAMKI 67
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F++M + T + NTL+ GKL+ L
Sbjct: 68 FEKMKESGCKPTTSTFNTLIKGYGKJGKLEESSRLL 103
>gi|125569173|gb|EAZ10688.1| hypothetical protein OsJ_00518 [Oryza sativa Japonica Group]
Length = 644
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 84 IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKE 143
+P + VI A ++ A++VF +PS +RT + N L AL + GK D+++
Sbjct: 167 LPNARTYTVVIEHLASAGFVDQAVEVFRLLPSLRARRTTRQYNVLAEALASAGKFDQLRW 226
Query: 144 LFISFNLKAIAVLDGL 159
L ++ + +DG+
Sbjct: 227 L-----VREMVAVDGV 237
>gi|125524572|gb|EAY72686.1| hypothetical protein OsI_00553 [Oryza sativa Indica Group]
Length = 628
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 84 IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKE 143
+P + VI A ++ A++VF +PS +RT + N L AL + GK D+++
Sbjct: 167 LPNARTYTVVIEHLASAGFVDQAVEVFRLLPSLRARRTTRQYNVLAEALASAGKFDQLRW 226
Query: 144 LFISFNLKAIAVLDGL 159
L ++ + +DG+
Sbjct: 227 L-----VREMVAVDGV 237
>gi|334185040|ref|NP_186914.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546752|sp|P0C896.1|PP209_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g02650, mitochondrial; Flags: Precursor
gi|332640323|gb|AEE73844.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 576
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 40 EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR 99
E+ LKP Y Y +II+ + M DE Q+IL + K + + + + +I Y +
Sbjct: 434 ESRGLKPDVYT---YTVIISGYAKGGMMDEAQEILAEAKKKHKKL-SPVTYHALIRGYCK 489
Query: 100 ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNAL-LTCGKLDRMKELFISFNLKAI---AV 155
+ AL++ +EM F VQ N L+ + L ++ + LF K + A+
Sbjct: 490 IEEYDEALKLLNEMDRFGVQPNADEYNKLIQSFCLKALDWEKAEVLFEEMKQKGLHLNAI 549
Query: 156 LDGLCSNLKIIMNDSQVRVTG 176
GL +K + ++++V G
Sbjct: 550 SQGLIRAVKEMESEAKVTEDG 570
>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 9/116 (7%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L D Q++ Q+ D V P+ + + ++ LE AL+VFD M
Sbjct: 363 YTTLIQGLFHDGDCDNAQKVFKQMVSDG-VPPDIMTYSILLDGLCNNGKLEKALEVFDYM 421
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLCS 161
++ + T++ + GK+D +LF S +LK + ++ GLCS
Sbjct: 422 QKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCS 477
>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 618
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
P+EI + +I+ Y + ++ A+ +++EM V + TLL L GK+ K+L
Sbjct: 375 PDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKL 434
Query: 145 F-------ISFNLKAIAV-LDGLCSN 162
F +S N + + LDGLC N
Sbjct: 435 FGVMKTYGVSANSQIYGIFLDGLCKN 460
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 9/119 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
++ Y +II L + DE +++ ++K +IP+ I + +I + A + + +
Sbjct: 236 GVITYSIIIDGLCKVGREDEAKELFEEMKAQG-MIPDVISYSTLIHGFCCAGKWDQSKHL 294
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLC 160
FDEM VQ + + + L++ L GK+ K+L + I +++DG C
Sbjct: 295 FDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFC 353
>gi|413953500|gb|AFW86149.1| hypothetical protein ZEAMMB73_846563 [Zea mays]
Length = 1039
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 25/114 (21%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N + +++T L + F E++ I+H D V + ++ I + L A+ +
Sbjct: 710 NAVTASILVTHLTKHGKFQEVENIMHGCFRD-EVQLDTALYNTFIKSMLESGKLHSAVSI 768
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNL 163
+D M S V +++++ NT+++ GKLD+ E+F + + + + + +N+
Sbjct: 769 YDRMVSSGVSQSMQTFNTMISVYGKGGKLDKAVEMFAAAQELGLPIDEKMYTNM 822
Score = 38.5 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 35/73 (47%)
Query: 81 TRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDR 140
++VIP+E+I+ +I YG+ L E A Q F E+ + ++ + L G DR
Sbjct: 377 SKVIPDEVIYGILIRIYGKLGLYEEARQTFGEIEKAGLLNDEQTYVAMAQVHLNAGDCDR 436
Query: 141 MKELFISFNLKAI 153
E+ S + +
Sbjct: 437 ALEVLESMKTRGV 449
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 56 LIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPS 115
L+I++L R DE + I QL + P++ +I YG+A+ LE A ++FD S
Sbjct: 612 LLISRLAREGSTDEARFIYDQLT-ELGTKPDDSAVATLIVQYGQAKQLERAQELFDS-AS 669
Query: 116 FNVQRTVKSLNTLLNALLTCGKLDRMKELFI 146
+ N +++A CG+ + LF+
Sbjct: 670 ASFPDGALVCNAMVDAFCKCGRAEDAYHLFM 700
>gi|226494576|ref|NP_001143685.1| uncharacterized protein LOC100276413 [Zea mays]
gi|195624570|gb|ACG34115.1| hypothetical protein [Zea mays]
Length = 467
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 20 KHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKH 79
K PK A++ F+ + + T + +NLL + LG+A MF+ M + +K
Sbjct: 63 KRPKSAVRFFRWAGQSVSHT------AYAWNLL-----VDILGKAAMFEPMWDAIRSMKQ 111
Query: 80 D-TRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNAL 132
+ + F +V + Y A ++ A+ D M + ++ +LN+LL+A+
Sbjct: 112 EGGGGLVSVATFASVFASYCAAGNIKDAIAALDVMDRYGLKHDAVALNSLLSAI 165
>gi|147820978|emb|CAN74604.1| hypothetical protein VITISV_025315 [Vitis vinifera]
Length = 525
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 47/95 (49%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N + +++++ G+A FDEM+++L + T P+ ++S +G +E +
Sbjct: 249 NTVTQNIVLSGYGKAGKFDEMEKVLSGMLESTSSKPDVWTMNTILSLFGNKGQIEIMEKW 308
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
+++ +F ++ ++ N L+ A D+M +
Sbjct: 309 YEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSV 343
>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
Length = 895
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 9/120 (7%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I L R++ + +L +++ + ++P+ I+ ++IS + +E A+ + DEM
Sbjct: 631 YGIVIRNLSRSENMEVAFMVLTEVEKNG-LVPDLHIYSSLISGLCKIADMEKAVGLLDEM 689
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLCSNLKI 165
++ + N L++ G + R + +F S K + A++DG C N I
Sbjct: 690 AKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDI 749
>gi|297797613|ref|XP_002866691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312526|gb|EFH42950.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 638
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 21/98 (21%), Positives = 49/98 (50%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++ L + + F + ++ +++ + + E +F ++ + A +++ A++V DEM
Sbjct: 151 YKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMVKKAIEVLDEM 210
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLK 151
P+F ++ LL+AL G + +LF L+
Sbjct: 211 PTFGLEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRLR 248
>gi|13486670|dbj|BAB39907.1| P0028E10.11 [Oryza sativa Japonica Group]
Length = 736
Score = 41.6 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 84 IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKE 143
+P + VI A ++ A++VF +PS +RT + N L AL + GK D+++
Sbjct: 167 LPNARTYTVVIEHLASAGFVDQAVEVFRLLPSLRARRTTRQYNVLAEALASAGKFDQLRW 226
Query: 144 LFISFNLKAIAVLDGL 159
L ++ + +DG+
Sbjct: 227 L-----VREMVAVDGV 237
>gi|295830917|gb|ADG39127.1| AT5G21222-like protein [Capsella grandiflora]
Length = 166
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y ++T L R K F + ++ +++ + + P+ I+F +I+ + L+ A+++
Sbjct: 9 SIITYTTLVTALTRQKHFHSLLSLISKVEKNG-LKPDTILFNAIINASSESGNLDQAMKI 67
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F++M + T + NTL+ GKL+ L
Sbjct: 68 FEKMKESGCKPTTSTFNTLIKGYGKIGKLEESSRLL 103
>gi|295830915|gb|ADG39126.1| AT5G21222-like protein [Capsella grandiflora]
Length = 166
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y ++T L R K F + ++ +++ + + P+ I+F +I+ + L+ A+++
Sbjct: 9 SIITYTTLVTALTRQKHFHSLLSLISKVEKNG-LKPDTILFNAIINASSESGNLDQAMKI 67
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F++M + T + NTL+ GKL+ L
Sbjct: 68 FEKMKESGCKPTTSTFNTLIKGYGKIGKLEESSRLL 103
>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
Length = 758
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 67/146 (45%), Gaps = 13/146 (8%)
Query: 11 RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEM 70
RL + L Q P+ AL++ + A + F + Y+ I+ KLG A FD M
Sbjct: 58 RLLAALREQSDPEAALRMLNS---------ALAREDFAPSSAVYEEIVQKLGTAGAFDLM 108
Query: 71 QQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQ-VFDEM--PSFNVQRTVKSLNT 127
+ ++ +++ + + ++ + + Y R R + A+ V +++ +F VQ N
Sbjct: 109 EGLVREMRREGHQV-RAVVVRSFVESYARLRRFDDAVDLVLNQLDNDTFGVQADTVVFNH 167
Query: 128 LLNALLTCGKLDRMKELFISFNLKAI 153
LLN L+ KL ++ ++ + I
Sbjct: 168 LLNVLVEGSKLKLLESVYNEMTGRGI 193
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 53/109 (48%), Gaps = 16/109 (14%)
Query: 65 KMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKS 124
++F+EM+ + P+E+ + +I L +AL + +EM S R+ +
Sbjct: 428 RLFEEMKS--------SGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVT 479
Query: 125 LNTLLNALLTCGKLDRMKELFISFNLKAIA--------VLDGLCSNLKI 165
NT+++AL +++ +E+F + + I+ ++DGLC +I
Sbjct: 480 YNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRI 528
>gi|356512321|ref|XP_003524868.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37230-like [Glycine max]
Length = 733
Score = 41.6 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 15/149 (10%)
Query: 9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAP--PLKPFRYNLLHYDLIITKLGRAKM 66
P + ++LH P+ ALQ ++ T P LK I+ LGR
Sbjct: 86 PSLVYNVLHGAASPEHALQFYRWVERAGLFTHTPETTLK-----------IVQILGRYSK 134
Query: 67 FDEMQQILHQLKHD--TRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKS 124
+ + IL +R E F ++I YGRA +++ ++++F +M + RTVKS
Sbjct: 135 LNHARCILFNDTRGGVSRAAVTEDAFVSLIDSYGRAGIVQESVKLFKKMKELGLDRTVKS 194
Query: 125 LNTLLNALLTCGKLDRMKELFISFNLKAI 153
+ L +L G+ K + + L+ +
Sbjct: 195 YDALFKVILRRGRYMMAKRYYNAMLLEGV 223
Score = 40.8 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I R K DE +++ ++K ++P I F ++ Y A ++ AL+V
Sbjct: 261 DVVTYNTLINGYFRFKKVDEAEKLFVEMK-GRDIVPNVISFTTMLKGYVAAGRIDDALKV 319
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F+EM V+ V + +TLL L K+ +++
Sbjct: 320 FEEMKGCGVKPNVVTFSTLLPGLCDAEKMAEARDVL 355
>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Brachypodium distachyon]
Length = 897
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 9/120 (7%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I L R++ + +L +++ + ++P+ I+ ++IS + +E A+ + DEM
Sbjct: 633 YGIVIRNLSRSENMEVAFMVLTEVEKNG-LVPDLHIYSSLISGLCKMADMEKAVGLLDEM 691
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLCSNLKI 165
++ + N L++ G + R + +F S K + A++DG C N I
Sbjct: 692 AKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDI 751
>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
Length = 973
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+L YD++I K E + +L ++ D + PE I + +I + R +E A ++
Sbjct: 275 DLYTYDILINGFCMEKRSREAKLMLLEMI-DVGLKPEPITYNALIDGFMRQGDIEQAFRI 333
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
DEM + ++ + NTLLN + GK+++ E+
Sbjct: 334 KDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEI 368
>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Vitis vinifera]
Length = 1011
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+L YD++I K E + +L ++ D + PE I + +I + R +E A ++
Sbjct: 284 DLYTYDILINGFCMEKRSREAKLMLLEMI-DVGLKPEPITYNALIDGFMRQGDIEQAFRI 342
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
DEM + ++ + NTLLN + GK+++ E+
Sbjct: 343 KDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEI 377
>gi|295830909|gb|ADG39123.1| AT5G21222-like protein [Capsella grandiflora]
gi|295830919|gb|ADG39128.1| AT5G21222-like protein [Capsella grandiflora]
Length = 166
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y ++T L R K F + ++ +++ + + P+ I+F +I+ + L+ A+++
Sbjct: 9 SIITYTTLVTALTRQKHFHSLLSLISKVEKNG-LKPDTILFNAIINASSESGNLDQAMKI 67
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F++M + T + NTL+ GKL+ L
Sbjct: 68 FEKMKESGCKPTTSTFNTLIKGYGKJGKLEESSRLL 103
>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like isoform 1 [Vitis vinifera]
Length = 610
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 60 KLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQ 119
++G+ K + +IL Q + +P+ I + +IS Y ++ +++ALQV D M NV
Sbjct: 161 RIGKTKKATWVMEILEQ----SGAVPDVITYNVLISGYCKSGEIDNALQVLDRM---NVA 213
Query: 120 RTVKSLNTLLNALLTCGKLDRMKELF 145
V + NT+L L GKL + E+
Sbjct: 214 PDVVTYNTILRTLCDSGKLKQAMEVL 239
>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Brachypodium distachyon]
Length = 757
Score = 41.6 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 18/159 (11%)
Query: 11 RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEM 70
RL + L Q P+ AL++ + A D P + Y+ II KLG A FD M
Sbjct: 58 RLVTALREQADPEAALRMLNSAL--ARDDGLTPSRDV------YEEIIRKLGTAGAFDLM 109
Query: 71 QQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQ-VFDEMPSFNVQRTVKSLNTLL 129
+ ++ +++ + + ++ + I Y R +L + A V +++ F VQ + N LL
Sbjct: 110 KVLVGEMRREGHEVGLGLV-QSFIGSYARLQLFDDAFDLVSNQLDMFGVQANTEVYNHLL 168
Query: 130 NALLTCGKLDRMKELFISFNLKAI--------AVLDGLC 160
L K+ ++ + + + I V+D LC
Sbjct: 169 TVLAEGSKIKLLESAYTEMSSQGIEPDVVTFNTVIDALC 207
>gi|223950475|gb|ACN29321.1| unknown [Zea mays]
gi|414586333|tpg|DAA36904.1| TPA: hypothetical protein ZEAMMB73_204717 [Zea mays]
Length = 468
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 20 KHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKH 79
K PK A++ F+ + + T + +NLL + LG+A MF+ M + +K
Sbjct: 64 KRPKSAVRFFRWAGQSVSHT------AYAWNLL-----VDILGKAAMFEPMWDAIRSMKQ 112
Query: 80 D-TRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNAL 132
+ + F +V + Y A ++ A+ D M + ++ +LN+LL+A+
Sbjct: 113 EGGGGLVSVATFASVFASYCAAGNIKDAIAALDVMDRYGLKHDAVALNSLLSAI 166
>gi|224070831|ref|XP_002303255.1| predicted protein [Populus trichocarpa]
gi|222840687|gb|EEE78234.1| predicted protein [Populus trichocarpa]
Length = 401
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE---EIIFCNVISFYGRARLLEHA 106
N ++ +++L A FD ++ H L+H + +P+ E +I YG+A +++HA
Sbjct: 71 NRFAFEDTVSRLAGANRFDYIE---HLLEHQ-KPLPQGRREGFMVRIIMLYGKAGMIKHA 126
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNAL 132
+ F M +RTVKS+N L L
Sbjct: 127 IDTFYNMHLHGCKRTVKSVNAALKVL 152
>gi|357122161|ref|XP_003562784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Brachypodium distachyon]
Length = 791
Score = 41.6 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 20/99 (20%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F +++ ++ ++ G+ + E+ + ++K + +PE + ++IS Y R L + A
Sbjct: 418 FVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMK-KSGYVPERDTYVSLISSYSRCGLFDQA 476
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
++++ M + + + N +L+AL G+ ++ ++LF
Sbjct: 477 MEIYKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLF 515
Score = 39.7 bits (91), Expect = 0.49, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I+ R +FD+ +I ++ + + P+ + V+S R E A ++F EM
Sbjct: 460 YVSLISSYSRCGLFDQAMEIYKRMI-EAGIHPDISTYNAVLSALARGGRWEQAEKLFAEM 518
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKII 166
+ + + S ++LL+A KLD+MK L + I +GL L ++
Sbjct: 519 ENLDSRPDELSYSSLLHAYANAKKLDKMKSLSEDIYAERIESHNGLVKTLVLV 571
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 62 GRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRT 121
G+A+ +DE +L +++ P + + ++IS Y + LLE A Q+ +EM ++
Sbjct: 293 GKARRYDEAIGVLKEMEQGG-CPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPD 351
Query: 122 VKSLNTLLNALLTCGKLD 139
V + TL++ L GK+D
Sbjct: 352 VITYTTLVSGLDRAGKID 369
Score = 37.4 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARL 102
PL + YN L I+ R ++ E ++ +++ P+++ +++ YG+AR
Sbjct: 244 PLDRYTYNTL-----ISCCRRRALYKEAAKVFDEMRA-AGFEPDKVTLNSLLDVYGKARR 297
Query: 103 LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153
+ A+ V EM +V + N+L+++ + G L+ +L +K I
Sbjct: 298 YDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGI 348
>gi|295830911|gb|ADG39124.1| AT5G21222-like protein [Capsella grandiflora]
Length = 166
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y ++T L R K F + ++ +++ + + P+ I+F +I+ + L+ A+++
Sbjct: 9 SIITYTTLVTALTRQKHFHSLLSLISKVEKNG-LKPDTILFNAIINASSESGNLDQAMKI 67
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F++M + T + NTL+ GKL+ L
Sbjct: 68 FEKMKESGCKPTTSTFNTLIKGYGKIGKLEESSRLL 103
>gi|414887392|tpg|DAA63406.1| TPA: hypothetical protein ZEAMMB73_124662 [Zea mays]
Length = 795
Score = 41.6 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ ++ +++ G+ + E+ + ++K IPE + ++IS Y R L + A+++
Sbjct: 429 DVVTWNTLLSVFGQNGLDSEVSGVFKEMK-KAGYIPERDTYVSLISSYSRCGLFDQAMEI 487
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ M + + + N +L+AL G+ ++ ++LF
Sbjct: 488 YKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLF 523
Score = 39.3 bits (90), Expect = 0.66, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I+ R + E Q+ ++K P+++ F +++ YG+AR E A+ V M
Sbjct: 258 YNTLISCCRRRGLHREAAQVFDEMKA-AGFEPDKVTFNSLLDVYGKARKHEEAIGVLKRM 316
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
+ +V + N+L++A + G L+ EL
Sbjct: 317 ENAGCTPSVVTYNSLISAYVKDGLLEEALEL 347
Score = 37.0 bits (84), Expect = 3.1, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I+ R +FD+ +I ++ + + P+ + V+S R E A ++F EM
Sbjct: 468 YVSLISSYSRCGLFDQAMEIYKRMI-EAGIYPDISTYNAVLSALARGGRWEQAEKLFAEM 526
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
+ + S ++LL+A KLD+MK L
Sbjct: 527 VDRDCKPDELSYSSLLHAYANAKKLDKMKTL 557
Score = 35.4 bits (80), Expect = 7.9, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F + + ++ ++ G+A+ +E +L +++ + P + + ++IS Y + LLE A
Sbjct: 286 FEPDKVTFNSLLDVYGKARKHEEAIGVLKRME-NAGCTPSVVTYNSLISAYVKDGLLEEA 344
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD 139
L++ EM ++ V + TL++ L GK+D
Sbjct: 345 LELKQEMEFRGMKPDVVTYTTLISGLDRVGKID 377
>gi|413951473|gb|AFW84122.1| hypothetical protein ZEAMMB73_475584 [Zea mays]
Length = 354
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 61/128 (47%), Gaps = 13/128 (10%)
Query: 20 KHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKH 79
K PK +++ F+ + + T + +NLL + LG+A MF+ M + +K
Sbjct: 62 KRPKSSVRFFRWAGQSVSHT------AYAWNLL-----VDILGKAAMFEPMWDAIRSMKQ 110
Query: 80 D-TRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTC-GK 137
+ + F +V + Y A ++ A+ D M + ++ +LN+LL+A+ G+
Sbjct: 111 EGGGGLVSVATFASVFASYCAAGNIKDAIAALDVMDRYGLKHDAVALNSLLSAICRVEGR 170
Query: 138 LDRMKELF 145
+ +++F
Sbjct: 171 MQDAQDVF 178
>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 748
Score = 41.6 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
LH T PE + N+IS Y + + +A +VFD+MP N+ S NT+L+A
Sbjct: 31 LHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNLY----SWNTILSAYS 86
Query: 134 TCGKLDRMKELF 145
G++ M+ LF
Sbjct: 87 KLGRVSEMEYLF 98
Score = 37.7 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 93 VISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
++ Y + ++ A +VFDE+P ++ V NTL+ L+ CG+++ K LF
Sbjct: 184 LVDMYSKMGMISCARKVFDELP----EKNVVMYNTLIMGLMRCGRVEDSKRLF 232
>gi|302761102|ref|XP_002963973.1| hypothetical protein SELMODRAFT_81279 [Selaginella moellendorffii]
gi|300167702|gb|EFJ34306.1| hypothetical protein SELMODRAFT_81279 [Selaginella moellendorffii]
Length = 640
Score = 41.6 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 93 VISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+IS +G+++ L A ++FD MP +R+ S N +L L G++DR KELF
Sbjct: 272 IISAHGQSKNLTAAERLFDSMP----ERSTVSWNAMLQLLADSGEIDRAKELF 320
>gi|224081220|ref|XP_002306340.1| predicted protein [Populus trichocarpa]
gi|222855789|gb|EEE93336.1| predicted protein [Populus trichocarpa]
Length = 416
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 40 EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR 99
E P L F +++Y G+A++ D+ + + ++ D R P I F ++I YG
Sbjct: 265 EKPTLPTFNSMIVNY-------GKARLKDKAESVFKKM-ADMRYTPSFITFESLIMMYGI 316
Query: 100 ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCG 136
+ A +FD+M + V +LN +LN G
Sbjct: 317 CDCVSKARDIFDDMVESGKEVKVSTLNAVLNVYCMNG 353
Score = 39.3 bits (90), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ ++L+I G+ + F++M+Q+ L ++ P F ++I YG+ARL + A V
Sbjct: 233 DIITFNLLIDSYGKKQDFEKMEQVFKSLLR-SKEKPTLPTFNSMIVNYGKARLKDKAESV 291
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F +M + + +L+ C + + +++F
Sbjct: 292 FKKMADMRYTPSFITFESLIMMYGICDCVSKARDIF 327
>gi|357144696|ref|XP_003573383.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g59040-like [Brachypodium distachyon]
Length = 606
Score = 41.6 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 64 AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVK 123
+ ++D+MQ+ + P+ + + +I YG+AR E A VF+EM ++ T K
Sbjct: 301 SSIYDQMQR--------AGLKPDVVSYSLLIKAYGKARREEEASAVFEEMLDAGIRPTRK 352
Query: 124 SLNTLLNALLTCGKLDRMKELF 145
S N LL+A G ++ + +F
Sbjct: 353 SYNILLDAFAISGLVEEAQTVF 374
>gi|357125910|ref|XP_003564632.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like isoform 1 [Brachypodium distachyon]
gi|357125912|ref|XP_003564633.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like isoform 2 [Brachypodium distachyon]
Length = 704
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
NL Y++++ L D + L+ + P+ I + ++S + + L++AL +
Sbjct: 158 NLQTYNIMLRSLCVRGDLDRAVTLFDSLRCRG-LAPDRITYSTLMSGFVKNNRLDNALYL 216
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF--------ISFNLKAIAV-LDGLC 160
DEMPS+ VQ N LL G+ ++ ++ S NL V LDGLC
Sbjct: 217 LDEMPSYEVQPDAVCYNALLGGCFRNGEFEKAMRVWEQLVRDPGASPNLATYNVMLDGLC 276
>gi|334188265|ref|NP_199684.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635750|sp|Q9FKC3.2|PP424_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g48730, chloroplastic; Flags: Precursor
gi|332008334|gb|AED95717.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 508
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 45/94 (47%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
R N + Y+ +I G+AKMF EM+ L Q+ + P+ + + +G +E
Sbjct: 253 RPNTITYNTLIDAYGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMME 312
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRM 141
+++ S ++ +++ N LL++ G +M
Sbjct: 313 NCYEKFQSSGIEPNIRTFNILLDSYGKSGNYKKM 346
Score = 39.7 bits (91), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
+ + ++ Y+++I GRA +M+ L +L R+ P + C+++ YGRA +
Sbjct: 358 YSWTIVTYNVVIDAFGRAGDLKQME-YLFRLMQSERIFPSCVTLCSLVRAYGRASKADKI 416
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
V + + +++ + N L++A G++++ E+
Sbjct: 417 GGVLRFIENSDIRLDLVFFNCLVDAY---GRMEKFAEM 451
>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 41.6 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 37/78 (47%)
Query: 81 TRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDR 140
TR+ P +I F V++ A LL+ FD M +NV+ + T+++ L G LDR
Sbjct: 314 TRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMKKYNVEPQISHYVTMVDLLGRAGHLDR 373
Query: 141 MKELFISFNLKAIAVLDG 158
+ +K A + G
Sbjct: 374 AIQFISEMPIKPTAAVWG 391
>gi|224090053|ref|XP_002335015.1| predicted protein [Populus trichocarpa]
gi|222832609|gb|EEE71086.1| predicted protein [Populus trichocarpa]
Length = 302
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 28/137 (20%)
Query: 57 IITKLGRAKMFDEMQQILHQLKHDTRV---------IPEEIIFCNVISF----------- 96
++ +L +A+ F EM+++L + D+ + + EE F N +F
Sbjct: 99 VVFRLFKARRFAEMKRVLTYVAMDSNLRCPVANLVSLVEESGFNNEPNFVEKLCDMLFRV 158
Query: 97 YGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF---ISFNLKAI 153
Y L E +VFD M S+ ++ +S L AL C K++ LF + FN++
Sbjct: 159 YADCNLFEEGFRVFDYMVSYELKIDDRSCIVFLLALKRCDKMEACLGLFKRMVEFNVEVT 218
Query: 154 A-----VLDGLCSNLKI 165
V+DGLC ++
Sbjct: 219 VYSLTIVIDGLCKRRRV 235
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.324 0.139 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,531,928,167
Number of Sequences: 23463169
Number of extensions: 93498877
Number of successful extensions: 308248
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 1496
Number of HSP's that attempted gapping in prelim test: 301039
Number of HSP's gapped (non-prelim): 8644
length of query: 176
length of database: 8,064,228,071
effective HSP length: 132
effective length of query: 44
effective length of database: 9,262,057,059
effective search space: 407530510596
effective search space used: 407530510596
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 71 (32.0 bits)