BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036589
         (176 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ZGB|A Chain A, Greater Efficiency Of Photosynthetic Carbon Fixation Due
           To Single Amino Acid Substitution
 pdb|3ZGB|B Chain B, Greater Efficiency Of Photosynthetic Carbon Fixation Due
           To Single Amino Acid Substitution
          Length = 972

 Score = 32.7 bits (73), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 8/57 (14%)

Query: 40  EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISF 96
           + PP +P+R        +I    R K+++  ++  H L H    IPEE ++ NV  F
Sbjct: 364 QVPPTEPYR--------VILGDVRDKLYNTRERSRHLLAHGISDIPEEAVYTNVEQF 412


>pdb|3S1S|A Chain A, Characterization And Crystal Structure Of The Type Iig
           Restriction Endonuclease Bpusi
          Length = 878

 Score = 28.1 bits (61), Expect = 2.8,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 13/73 (17%)

Query: 28  LFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMF-DEMQQILHQLKHDTR---- 82
           LF  P PN ND +      +  NLL     +  LGR  +  DE+ +++H +    R    
Sbjct: 244 LFSEPEPNTNDNDI-----WNVNLLSS---LNDLGRRILTGDELAELIHDIATRGRGHEG 295

Query: 83  VIPEEIIFCNVIS 95
           V+P +I    V+S
Sbjct: 296 VVPTDIELGKVLS 308


>pdb|2Y7C|A Chain A, Atomic Model Of The Ocr-Bound Methylase Complex From The
           Type I Restriction-Modification Enzyme Ecoki (M2s1).
           Based On Fitting Into Em Map 1534.
 pdb|2Y7H|A Chain A, Atomic Model Of The Dna-Bound Methylase Complex From The
           Type I Restriction-Modification Enzyme Ecoki (M2s1).
           Based On Fitting Into Em Map 1534
          Length = 464

 Score = 26.6 bits (57), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 28/143 (19%)

Query: 21  HPKLALQLFKNPNPNANDT---EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQL 77
           HP L +   +  + + ND    E    +  R+ L   DL+ T+   +  F  +  +L +L
Sbjct: 250 HPILRISSVRAGHVDQNDIRFLECSESELNRHKLQDGDLLFTRYNGSLEFVGVCGLLKKL 309

Query: 78  KHDTRVIPEEIIFCNVISFYGRARLLEHAL----QVFDEMPSFNVQRTVKSLNTLLNALL 133
           +H   + P+++I         RARL + AL    ++F   PS              NA++
Sbjct: 310 QHQNLLYPDKLI---------RARLTKDALPEYIEIFFSSPSAR------------NAMM 348

Query: 134 TCGKLDRMKELFISFNLKAIAVL 156
            C K    ++     ++K+  VL
Sbjct: 349 NCVKTTSGQKGISGKDIKSQVVL 371


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.139    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,716,003
Number of Sequences: 62578
Number of extensions: 170844
Number of successful extensions: 439
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 438
Number of HSP's gapped (non-prelim): 3
length of query: 176
length of database: 14,973,337
effective HSP length: 92
effective length of query: 84
effective length of database: 9,216,161
effective search space: 774157524
effective search space used: 774157524
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)