BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036589
(176 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9MAG8|PPR79_ARATH Putative pentatricopeptide repeat-containing protein At1g53330
OS=Arabidopsis thaliana GN=At1g53330 PE=3 SV=1
Length = 471
Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 84/149 (56%), Positives = 111/149 (74%), Gaps = 4/149 (2%)
Query: 1 MNKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITK 60
M+ K S FRLASLL + P A++LF+NP+P + + P +PFRY+LL YD+IITK
Sbjct: 1 MSAVKSVSSFRLASLLRRENDPSAAMKLFRNPDPESTN----PKRPFRYSLLCYDIIITK 56
Query: 61 LGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR 120
LG +KMFDE+ Q+L LK DTR++P EIIFCNVI+F+GR +L AL +FDEMP + QR
Sbjct: 57 LGGSKMFDELDQVLLHLKTDTRIVPTEIIFCNVINFFGRGKLPSRALHMFDEMPQYRCQR 116
Query: 121 TVKSLNTLLNALLTCGKLDRMKELFISFN 149
TVKSLN+LL+ALL CG+L++MKE S +
Sbjct: 117 TVKSLNSLLSALLKCGELEKMKERLSSID 145
>sp|Q9LG23|PPR82_ARATH Pentatricopeptide repeat-containing protein At1g55890,
mitochondrial OS=Arabidopsis thaliana GN=At1g55890 PE=1
SV=1
Length = 398
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 76/134 (56%), Gaps = 10/134 (7%)
Query: 12 LASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQ 71
L SL++ +++PK ++ FK +A + FR N+ YD + +L AK ++
Sbjct: 44 LTSLVNGERNPKRIVEKFK---------KACESERFRTNIAVYDRTVRRLVAAKRLHYVE 94
Query: 72 QILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA 131
+IL + K R + +E +IS YG+A + E+A +VF+EMP+ + +R+V S N LL+A
Sbjct: 95 EILEEQKK-YRDMSKEGFAARIISLYGKAGMFENAQKVFEEMPNRDCKRSVLSFNALLSA 153
Query: 132 LLTCGKLDRMKELF 145
K D ++ELF
Sbjct: 154 YRLSKKFDVVEELF 167
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/116 (18%), Positives = 58/116 (50%)
Query: 40 EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR 99
E P + + ++L ++ +++ +K FD ++++ ++L + P+ + + +I
Sbjct: 133 EEMPNRDCKRSVLSFNALLSAYRLSKKFDVVEELFNELPGKLSIKPDIVSYNTLIKALCE 192
Query: 100 ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAV 155
L A+ + DE+ + ++ + + NTLL + G+ + +E++ K +A+
Sbjct: 193 KDSLPEAVALLDEIENKGLKPDIVTFNTLLLSSYLKGQFELGEEIWAKMVEKNVAI 248
>sp|Q9LK57|PP226_ARATH Pentatricopeptide repeat-containing protein At3g13160,
mitochondrial OS=Arabidopsis thaliana GN=At3g13160 PE=1
SV=1
Length = 394
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 77/143 (53%), Gaps = 11/143 (7%)
Query: 4 AKPTSPF-RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLG 62
A P+ P L +L++ ++ PK + FK +A + FR N+ Y+ + +L
Sbjct: 32 ATPSPPKPSLITLVNDERDPKFITEKFK---------KACQAEWFRKNIAVYERTVRRLA 82
Query: 63 RAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTV 122
AK F+ +++IL + ++ + +E +I+ YGR + E+A +VFDEMP N +RT
Sbjct: 83 AAKKFEWVEEILEE-QNKYPNMSKEGFVARIINLYGRVGMFENAQKVFDEMPERNCKRTA 141
Query: 123 KSLNTLLNALLTCGKLDRMKELF 145
S N LLNA + K D ++ +F
Sbjct: 142 LSFNALLNACVNSKKFDLVEGIF 164
>sp|Q9LQQ1|PPR20_ARATH Pentatricopeptide repeat-containing protein At1g07740,
mitochondrial OS=Arabidopsis thaliana GN=At1g07740 PE=2
SV=1
Length = 459
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 69/123 (56%), Gaps = 13/123 (10%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
FR++ Y +I KL +++ FD + QIL +++ V E +F +I YG+A ++ A
Sbjct: 77 FRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRY-RNVRCRESLFMGLIQHYGKAGSVDKA 135
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF------------ISFNLKAIA 154
+ VF ++ SF+ RT++SLNTL+N L+ G+L++ K F +SFN+
Sbjct: 136 IDVFHKITSFDCVRTIQSLNTLINVLVDNGELEKAKSFFDGAKDMRLRPNSVSFNILIKG 195
Query: 155 VLD 157
LD
Sbjct: 196 FLD 198
Score = 30.4 bits (67), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%)
Query: 80 DTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD 139
D R+ P + F +I + E A +VFDEM VQ +V + N+L+ L +
Sbjct: 179 DMRLRPNSVSFNILIKGFLDKCDWEAACKVFDEMLEMEVQPSVVTYNSLIGFLCRNDDMG 238
Query: 140 RMKELF 145
+ K L
Sbjct: 239 KAKSLL 244
>sp|Q9FFE3|PP388_ARATH Pentatricopeptide repeat-containing protein At5g16420,
mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2
SV=1
Length = 535
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 9 PFRLASLLHLQKHPKLALQLF---KNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAK 65
P RL S++ Q++ LALQ+F +P F +N Y I+ KL RA+
Sbjct: 49 PKRLVSMITQQQNIDLALQIFLYAGKSHPG-----------FTHNYDTYHSILFKLSRAR 97
Query: 66 MFDEMQQILHQLKHDTRVIP-EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKS 124
FD ++ ++ L++ I E +F +++ YG A E ++++F +P F V+R+V+S
Sbjct: 98 AFDPVESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRS 157
Query: 125 LNTLLNALLTCGKLDRMKELF 145
LNTLLN L+ + D + +F
Sbjct: 158 LNTLLNVLIQNQRFDLVHAMF 178
>sp|Q9M065|PP352_ARATH Pentatricopeptide repeat-containing protein At4g36680,
mitochondrial OS=Arabidopsis thaliana GN=At4g36680 PE=1
SV=1
Length = 412
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 69/132 (52%), Gaps = 9/132 (6%)
Query: 14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
S L + P AL+++ N +D A P+ RY +L + +L + + F +++ +
Sbjct: 38 STLRKEHDPDKALKIY----ANVSDHSASPVSS-RYAQ---ELTVRRLAKCRRFSDIETL 89
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
+ K+D + I EE + +I YG+A + HA++ F++M + R+ S N LLNA L
Sbjct: 90 IESHKNDPK-IKEEPFYSTLIRSYGQASMFNHAMRTFEQMDQYGTPRSAVSFNALLNACL 148
Query: 134 TCGKLDRMKELF 145
D++ +LF
Sbjct: 149 HSKNFDKVPQLF 160
Score = 36.6 bits (83), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 64 AKMFDEMQQILHQL-KHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTV 122
+K FD++ Q+ ++ + ++IP++I + +I Y + E A+++ +M ++ T
Sbjct: 150 SKNFDKVPQLFDEIPQRYNKIIPDKISYGILIKSYCDSGTPEKAIEIMRQMQGKGMEVTT 209
Query: 123 KSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKII 166
+ T+L++L G+L+ L+ +K LD N++I+
Sbjct: 210 IAFTTILSSLYKKGELEVADNLWNEM-VKKGCELDNAAYNVRIM 252
>sp|Q9LUD6|PP230_ARATH Pentatricopeptide repeat-containing protein At3g14580,
mitochondrial OS=Arabidopsis thaliana GN=At3g14580 PE=2
SV=1
Length = 405
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 62/113 (54%), Gaps = 2/113 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR-ARLLEHALQVFDE 112
Y L+I K G+AKM+DE+++++ +K + R E F N++ YG A + A+++
Sbjct: 98 YALMINKFGQAKMYDEIEEVMRTIKLEKRCRFSEEFFYNLMRIYGNLAGRINRAIEILFG 157
Query: 113 MPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKI 165
MP F + KS N +LN L++ D + ++F+S + + D C N+ I
Sbjct: 158 MPDFGCWPSSKSFNFILNLLVSAKLFDEIHKIFVSAPKLGVEI-DACCLNILI 209
>sp|Q9ZU67|PP162_ARATH Pentatricopeptide repeat-containing protein At2g18520,
mitochondrial OS=Arabidopsis thaliana GN=At2g18520 PE=2
SV=1
Length = 418
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 76/148 (51%), Gaps = 17/148 (11%)
Query: 1 MNKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITK 60
M+KAK S L + P AL ++K+ + N+ PL RY + +L + +
Sbjct: 33 MSKAK--------SKLRKVQDPDKALAIYKSVSNNSTS----PLSS-RYAM---ELTVQR 76
Query: 61 LGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR 120
L +++ F +++ ++ K++ + I E +I YGRA + +HA+++F+EM R
Sbjct: 77 LAKSQRFSDIEALIESHKNNPK-IKTETFLSTLIRSYGRASMFDHAMKMFEEMDKLGTPR 135
Query: 121 TVKSLNTLLNALLTCGKLDRMKELFISF 148
TV S N LL A L +R+ +LF F
Sbjct: 136 TVVSFNALLAACLHSDLFERVPQLFDEF 163
>sp|Q9LK58|PP225_ARATH Pentatricopeptide repeat-containing protein At3g13150
OS=Arabidopsis thaliana GN=At3g13150 PE=2 SV=1
Length = 551
Score = 62.0 bits (149), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 54 YDLIITKLGRAKMFDEMQQIL-HQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDE 112
Y I +L AK F + ++L +Q K D I E ++ YG + + EHA ++FDE
Sbjct: 90 YSAFIRRLREAKKFSTIDEVLQYQKKFDD--IKSEDFVIRIMLLYGYSGMAEHAHKLFDE 147
Query: 113 MPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
MP N +RTVKS N LL+A + KLD + F
Sbjct: 148 MPELNCERTVKSFNALLSAYVNSKKLDEAMKTF 180
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 57.8 bits (138), Expect = 4e-08, Method: Composition-based stats.
Identities = 34/148 (22%), Positives = 71/148 (47%), Gaps = 9/148 (6%)
Query: 6 PTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAK 65
P P + +++ QK P AL++F + F++ L Y +I KLG
Sbjct: 4 PLLPKHVTAVIKCQKDPMKALEMFNSMRKEVG---------FKHTLSTYRSVIEKLGYYG 54
Query: 66 MFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSL 125
F+ M+++L ++ + E ++ + YGR ++ A+ VF+ M ++ + TV S
Sbjct: 55 KFEAMEEVLVDMRENVGNHMLEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSY 114
Query: 126 NTLLNALLTCGKLDRMKELFISFNLKAI 153
N +++ L+ G D+ ++++ + I
Sbjct: 115 NAIMSVLVDSGYFDQAHKVYMRMRDRGI 142
>sp|Q9SAB4|PPR33_ARATH Pentatricopeptide repeat-containing protein At1g11630,
mitochondrial OS=Arabidopsis thaliana GN=At1g11630 PE=1
SV=1
Length = 405
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 4/135 (2%)
Query: 3 KAKPTSPFRLASLLHLQKHPKLALQLFK---NPNPNANDTEAPPLKP-FRYNLLHYDLII 58
K+ +S F L SL QK + L L K NP+ + L P + + + + + +
Sbjct: 23 KSSSSSIFTLKSLTSKQKKSRDTLSLLKSENNPDRILEICRSTSLSPDYHVDRIIFSVAV 82
Query: 59 TKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNV 118
L R K F + Q+L + E I YGRA +L+ ++Q F + + +
Sbjct: 83 VTLAREKHFVAVSQLLDGFIQNQPDPKSESFAVRAIILYGRANMLDRSIQTFRNLEQYEI 142
Query: 119 QRTVKSLNTLLNALL 133
RTVKSLN LL A L
Sbjct: 143 PRTVKSLNALLFACL 157
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 56.2 bits (134), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 16/115 (13%)
Query: 47 FRYNLLHYDLIITKLGR--------AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYG 98
R NL+ Y+ +I G+ AK FDEMQ+ V P+ I F ++++
Sbjct: 299 LRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQR--------NGVQPDRITFNSLLAVCS 350
Query: 99 RARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153
R L E A +FDEM + +++ V S NTLL+A+ G++D E+ +K I
Sbjct: 351 RGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRI 405
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARL 102
P+K N++ Y +I +A FDE + ++++ + + + + ++S Y +
Sbjct: 401 PVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRY-LGIALDRVSYNTLLSIYTKVGR 459
Query: 103 LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
E AL + EM S +++ V + N LL GK D +K++F
Sbjct: 460 SEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVF 502
Score = 39.7 bits (91), Expect = 0.010, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
+ +++ Y+ ++ G+ +DE++++ ++K + V+P + + +I Y + L + A+
Sbjct: 476 KKDVVTYNALLGGYGKQGKYDEVKKVFTEMKRE-HVLPNLLTYSTLIDGYSKGGLYKEAM 534
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCG 136
++F E S ++ V + L++AL G
Sbjct: 535 EIFREFKSAGLRADVVLYSALIDALCKNG 563
Score = 35.0 bits (79), Expect = 0.23, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 90 FCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGK 137
F +IS YGR+ L E A+ VF+ M + ++ + + N +++A CGK
Sbjct: 271 FSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDA---CGK 315
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
NLL Y +I + ++ E +I + K + + +++ +I + L+ A+ +
Sbjct: 513 NLLTYSTLIDGYSKGGLYKEAMEIFREFK-SAGLRADVVLYSALIDALCKNGLVGSAVSL 571
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDR 140
DEM + V + N++++A +DR
Sbjct: 572 IDEMTKEGISPNVVTYNSIIDAFGRSATMDR 602
Score = 30.0 bits (66), Expect = 8.4, Method: Composition-based stats.
Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 12/114 (10%)
Query: 57 IITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSF 116
I TK+GR+ +E IL ++ + + + + ++ YG+ + +VF EM
Sbjct: 453 IYTKVGRS---EEALDILREMA-SVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKRE 508
Query: 117 NVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLCSN 162
+V + + +TL++ G E+F F + A++D LC N
Sbjct: 509 HVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKN 562
>sp|Q8LDU5|PP298_ARATH Pentatricopeptide repeat-containing protein At4g01400,
mitochondrial OS=Arabidopsis thaliana GN=At4g01400 PE=2
SV=2
Length = 466
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 11/152 (7%)
Query: 3 KAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLG 62
K+ SP R+ L+ Q P LA ++F + N FR++ + ++I KLG
Sbjct: 45 KSPIGSPTRVQKLIASQSDPLLAKEIFDYASQQPN---------FRHSRSSHLILILKLG 95
Query: 63 RAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTV 122
R + F+ + +L + + + E IF +I Y A+L E L F +M FN
Sbjct: 96 RGRYFNLIDDVLAKHRSSGYPLTGE-IFTYLIKVYAEAKLPEKVLSTFYKMLEFNFTPQP 154
Query: 123 KSLNTLLNALLTC-GKLDRMKELFISFNLKAI 153
K LN +L+ L++ G L + ELF S L +
Sbjct: 155 KHLNRILDVLVSHRGYLQKAFELFKSSRLHGV 186
>sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060
OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1
Length = 687
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 39/151 (25%), Positives = 72/151 (47%), Gaps = 11/151 (7%)
Query: 5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRA 64
K SP + LL +K+P+ A LF + T P + ++ + Y I+ +L
Sbjct: 6 KSLSPKHVLKLLKSEKNPRAAFALFDSA------TRHPG---YAHSAVVYHHILRRLSET 56
Query: 65 KMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPS-FNVQRTVK 123
+M + + +I+ ++ E++ +VI YG+ + + AL VF M F + ++
Sbjct: 57 RMVNHVSRIVELIRSQECKCDEDVAL-SVIKTYGKNSMPDQALDVFKRMREIFGCEPAIR 115
Query: 124 SLNTLLNALLTCGKLDRMKELFISFNLKAIA 154
S NTLLNA + + +++ LF F +A
Sbjct: 116 SYNTLLNAFVEAKQWVKVESLFAYFETAGVA 146
Score = 33.1 bits (74), Expect = 0.86, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 16/127 (12%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N+ ++++I+ L + D+ +I ++K + R + + ++I A ++ A V
Sbjct: 254 NVKTHNIMISGLSKCGRVDDCLKIWERMKQNERE-KDLYTYSSLIHGLCDAGNVDKAESV 312
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF-----------ISFNLKAIAVLDG 158
F+E+ V + NT+L CGK+ EL+ +S+N+ ++ G
Sbjct: 313 FNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKNSVNIVSYNI----LIKG 368
Query: 159 LCSNLKI 165
L N KI
Sbjct: 369 LLENGKI 375
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 53.1 bits (126), Expect = 8e-07, Method: Composition-based stats.
Identities = 37/89 (41%), Positives = 47/89 (52%), Gaps = 10/89 (11%)
Query: 69 EMQQILHQLKHDTRVI---PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSL 125
+ Q+ L K+ R I P E I+ +IS GR LL+ L+VFDEMPS V R+V S
Sbjct: 120 DWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSY 179
Query: 126 NTLLNALLTCGK-------LDRMKELFIS 147
L+NA G+ LDRMK IS
Sbjct: 180 TALINAYGRNGRYETSLELLDRMKNEKIS 208
Score = 36.6 bits (83), Expect = 0.078, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ II G+ + ++ ++IL + + ++P + VI +G+A L E AL F+ M
Sbjct: 425 YEGIIFACGKGGLHEDARKILQYMTAND-IVPSSKAYTGVIEAFGQAALYEEALVAFNTM 483
Query: 114 PSFNVQRTVKSLNTLL 129
++++ ++LL
Sbjct: 484 HEVGSNPSIETFHSLL 499
Score = 34.7 bits (78), Expect = 0.30, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +++ + DE + + + +D ++P+ + +++ +G+ R LE +
Sbjct: 246 DIVTYNTLLSACAIRGLGDEAEMVFRTM-NDGGIVPDLTTYSHLVETFGKLRRLEKVCDL 304
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
EM S + S N LL A G + +F
Sbjct: 305 LGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVF 340
Score = 31.6 bits (70), Expect = 3.1, Method: Composition-based stats.
Identities = 17/97 (17%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+L Y ++ G+ + +++ +L ++ +P+ + ++ Y ++ ++ A+ V
Sbjct: 281 DLTTYSHLVETFGKLRRLEKVCDLLGEMASGGS-LPDITSYNVLLEAYAKSGSIKEAMGV 339
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFI 146
F +M + + + LLN G+ D +++LF+
Sbjct: 340 FHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFL 376
>sp|Q8LE47|PPR87_ARATH Pentatricopeptide repeat-containing protein At1g61870,
mitochondrial OS=Arabidopsis thaliana GN=PPR336 PE=2
SV=2
Length = 408
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 4/135 (2%)
Query: 16 LHLQKHPKLALQLFK---NPNPNANDTEAPPLKP-FRYNLLHYDLIITKLGRAKMFDEMQ 71
L ++ K AL L K +P+ A L P R + + + + L K F +
Sbjct: 41 LTSKEKSKAALSLLKSEKDPDRILEICRAASLTPDCRIDRIAFSAAVENLAEKKHFSAVS 100
Query: 72 QILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA 131
+L + + E + I Y +A +L+H+L+VF ++ F + RTVKSLN LL A
Sbjct: 101 NLLDGFIENRPDLKSERFAAHAIVLYAQANMLDHSLRVFRDLEKFEISRTVKSLNALLFA 160
Query: 132 LLTCGKLDRMKELFI 146
L K ++I
Sbjct: 161 CLVAKDYKEAKRVYI 175
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 9/118 (7%)
Query: 52 LHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFD 111
+ + ++I+ L R + E Q LK R P+ I++ N++ + RA + A +VF
Sbjct: 222 IAFSIVISNLSRKRRASEAQSFFDSLK--DRFEPDVIVYTNLVRGWCRAGEISEAEKVFK 279
Query: 112 EMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMND 169
EM ++ V + + +++AL CG++ R ++F +LD C+ I N+
Sbjct: 280 EMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFAD-------MLDSGCAPNAITFNN 330
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 10/115 (8%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+ ++I + RA + E ++++ D +P++I F VIS R R A FD +
Sbjct: 189 FTILIRRYVRAGLASEAVHCFNRME-DYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSL 247
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA--------VLDGLC 160
+ V L+ G++ +++F L I V+D LC
Sbjct: 248 KD-RFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALC 301
>sp|Q9LYT2|PP287_ARATH Pentatricopeptide repeat-containing protein At3g59040
OS=Arabidopsis thaliana GN=At3g59040 PE=2 SV=2
Length = 583
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 64 AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVK 123
+K++D+MQ+ + + P+ + + +I YGRAR E AL VF+EM V+ T K
Sbjct: 299 SKIYDQMQR--------SDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHK 350
Query: 124 SLNTLLNALLTCGKLDRMKELFIS 147
+ N LL+A G +++ K +F S
Sbjct: 351 AYNILLDAFAISGMVEQAKTVFKS 374
>sp|Q84VG6|PP160_ARATH Pentatricopeptide repeat-containing protein At2g17525,
mitochondrial OS=Arabidopsis thaliana GN=At2g17525 PE=2
SV=2
Length = 626
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y + KL + FD + Q+L ++ + P++ IF +I +GRARL++ + V D +
Sbjct: 79 YRALFHKLCVFRRFDTVYQLLDEMPDSIGLPPDDAIFVTIIRGFGRARLIKRVISVVDLV 138
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F ++ ++K N++L+ L+ +D +E F
Sbjct: 139 SKFGIKPSLKVFNSILDVLVK-EDIDIAREFF 169
>sp|Q9SYK1|PPR11_ARATH Pentatricopeptide repeat-containing protein At1g05600
OS=Arabidopsis thaliana GN=At1g05600 PE=2 SV=1
Length = 504
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 9/138 (6%)
Query: 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMF 67
+P L+ +L QK+P AL+LF+ + +N Y +I LG++
Sbjct: 11 TPSLLSQILKKQKNPVTALKLFEEAKER--------FPSYGHNGSVYATMIDILGKSNRV 62
Query: 68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNT 127
EM+ ++ ++K D+ ++ +F +VI + RA LE A+ +F + FN S +T
Sbjct: 63 LEMKYVIERMKEDS-CECKDSVFASVIRTFSRAGRLEDAISLFKSLHEFNCVNWSLSFDT 121
Query: 128 LLNALLTCGKLDRMKELF 145
LL ++ +L+ +F
Sbjct: 122 LLQEMVKESELEAACHIF 139
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 50.1 bits (118), Expect = 8e-06, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 5/129 (3%)
Query: 41 APPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRA 100
AP + F+ +I + FD ++++L +++ + RVI E F V YG+A
Sbjct: 67 APKMGSFKLGDSTLSSMIESYANSGDFDSVEKLLSRIRLENRVIIERS-FIVVFRAYGKA 125
Query: 101 RLLEHALQVFDEM-PSFNVQRTVKSLNTLLNALLTCGKLDRMKELF---ISFNLKAIAVL 156
L + A+ +F M F +R+VKS N++LN ++ G R E + ++ N+
Sbjct: 126 HLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISP 185
Query: 157 DGLCSNLKI 165
+GL NL I
Sbjct: 186 NGLSFNLVI 194
Score = 35.0 bits (79), Expect = 0.27, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 16/136 (11%)
Query: 33 NPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCN 92
N N N +P N L ++L+I L + + D ++ + + + +P+ +C
Sbjct: 176 NSNMNMNISP-------NGLSFNLVIKALCKLRFVDRAIEVFRGMP-ERKCLPDGYTYCT 227
Query: 93 VISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA 152
++ + ++ A+ + DEM S + N L++ L G L R+ +L + LK
Sbjct: 228 LMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKG 287
Query: 153 I--------AVLDGLC 160
++ GLC
Sbjct: 288 CVPNEVTYNTLIHGLC 303
>sp|Q9SCP4|PP279_ARATH Pentatricopeptide repeat-containing protein At3g53170
OS=Arabidopsis thaliana GN=At3g53170 PE=2 SV=1
Length = 447
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F + Y+++I G+A ++M + ++K+ V P I +C++++ Y +A L+
Sbjct: 302 FSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQG-VKPNSITYCSLVNAYSKAGLVVKI 360
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFI 146
V ++ + +V N ++NA G L MKEL+I
Sbjct: 361 DSVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYI 400
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 40/90 (44%)
Query: 52 LHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFD 111
+ Y+ II G+A MF+EM+ +L + D +P+ ++I YG R + +
Sbjct: 201 VTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYS 260
Query: 112 EMPSFNVQRTVKSLNTLLNALLTCGKLDRM 141
VQ + + N L+ + G +M
Sbjct: 261 RFQLMGVQPDITTFNILILSFGKAGMYKKM 290
>sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750
OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1
Length = 855
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+++ Y ++ LGRAK F E+ ++L ++ D P + + +I YGRA L+ A
Sbjct: 355 FKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDG-CKPNTVTYNRLIHSYGRANYLKEA 413
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD-------RMKELFIS 147
+ VF++M + + TL++ G LD RM+E +S
Sbjct: 414 MNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLS 461
Score = 37.0 bits (84), Expect = 0.067, Method: Composition-based stats.
Identities = 21/99 (21%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+ + + Y +++ LG +E + + +++ V P+E ++ ++ +G+A ++ A
Sbjct: 530 FQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWV-PDEPVYGLLVDLWGKAGNVDKA 588
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
Q + M ++ V + N+LL+ L ++ RM E +
Sbjct: 589 WQWYQAMLQAGLRPNVPTCNSLLSTFL---RVHRMSEAY 624
Score = 32.3 bits (72), Expect = 1.8, Method: Composition-based stats.
Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +II LG+A ++ ++ P + F +I+ + +AR E AL+++ +M
Sbjct: 467 YSVIINCLGKAGHLPAAHRLFCEMVGQG-CTPNLVTFNIMIALHAKARNYETALKLYRDM 525
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLK 151
+ Q + + ++ L CG L+ + +F K
Sbjct: 526 QNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRK 563
>sp|Q9M8W9|PP211_ARATH Pentatricopeptide repeat-containing protein At3g04130,
mitochondrial OS=Arabidopsis thaliana GN=At3g04130 PE=2
SV=2
Length = 508
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 41 APPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRA 100
A K +++ YD+ + LG+AK +D M++ + +++ D V + ++ + A
Sbjct: 111 AESCKGHKHSSDAYDMAVDILGKAKKWDRMKEFVERMRGDKLVTLNTVA--KIMRRFAGA 168
Query: 101 RLLEHALQVFDEMPSFNVQRTVKSLNTLLNAL 132
E A+ +FD + F +++ +S+N LL+ L
Sbjct: 169 GEWEEAVGIFDRLGEFGLEKNTESMNLLLDTL 200
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 46.6 bits (109), Expect = 8e-05, Method: Composition-based stats.
Identities = 31/129 (24%), Positives = 68/129 (52%), Gaps = 11/129 (8%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ ++ +I + R + DE ++ ++K D+ V+P+E+I CN++S GR + + +
Sbjct: 176 DVVTWNTMIERYCRFGLVDEAFKLFEEMK-DSNVMPDEMILCNIVSACGRTGNMRYNRAI 234
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLT----CGKLDRMKELFISFNLKAIAVLDGLCSNLKI 165
++ F ++ V+ LL AL+T G +D +E F +++ + V + S
Sbjct: 235 YE----FLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSK 290
Query: 166 I--MNDSQV 172
++D+QV
Sbjct: 291 CGRLDDAQV 299
Score = 32.3 bits (72), Expect = 1.6, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 66 MFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSL 125
+ +E ++I + + + P+ + ++ +GRA LL AL+V + MP V V
Sbjct: 460 LVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMP---VASNVVIW 516
Query: 126 NTLLNALLTCGKLD 139
+L++A G+L+
Sbjct: 517 GSLMSACRIHGELE 530
Score = 31.2 bits (69), Expect = 3.7, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
NL +++ + D+ Q I Q + + + + +IS Y + + AL+V
Sbjct: 277 NLFVSTAMVSGYSKCGRLDDAQVIFDQTEKK-----DLVCWTTMISAYVESDYPQEALRV 331
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMK 142
F+EM ++ V S+ ++++A G LD+ K
Sbjct: 332 FEEMCCSGIKPDVVSMFSVISACANLGILDKAK 364
>sp|Q3E9F0|PP392_ARATH Pentatricopeptide repeat-containing protein At5g18475
OS=Arabidopsis thaliana GN=At5g18475 PE=2 SV=1
Length = 506
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 75/145 (51%), Gaps = 11/145 (7%)
Query: 3 KAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLG 62
K K S SL+ ++ P+ L +F +A K F +N Y +++ L
Sbjct: 50 KTKFISHESAVSLMKRERDPQGVLDIF---------NKASQQKGFNHNNATYSVLLDNLV 100
Query: 63 RAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSF-NVQRT 121
R K F + ILHQ+K++T +E +F N++ + R+ L + +++F+ + V+ +
Sbjct: 101 RHKKFLAVDAILHQMKYETCRF-QESLFLNLMRHFSRSDLHDKVMEMFNLIQVIARVKPS 159
Query: 122 VKSLNTLLNALLTCGKLDRMKELFI 146
+ +++T LN L+ G+++ ++L +
Sbjct: 160 LNAISTCLNLLIDSGEVNLSRKLLL 184
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 34/77 (44%)
Query: 69 EMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTL 128
E ++ + + P+ + F +I+ + RA +E A ++ D M V + + L
Sbjct: 250 EAVELFEDMISKEGISPDPVTFNVMINGFCRAGEVERAKKILDFMKKNGCNPNVYNYSAL 309
Query: 129 LNALLTCGKLDRMKELF 145
+N GK+ K+ F
Sbjct: 310 MNGFCKVGKIQEAKQTF 326
>sp|Q9ZUU3|PP190_ARATH Pentatricopeptide repeat-containing protein At2g37230
OS=Arabidopsis thaliana GN=At2g37230 PE=2 SV=1
Length = 757
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 20/136 (14%)
Query: 15 LLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 74
+LH K + ALQ F+ R L+ +D T + KM E+ ++
Sbjct: 123 VLHGAKKLEHALQFFRWTE--------------RSGLIRHDRD-THMKMIKMLGEVSKLN 167
Query: 75 HQ----LKHDTRVIP-EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL 129
H L + +P +E +F +I YG+A +++ ++++F +M V+RT+KS N+L
Sbjct: 168 HARCILLDMPEKGVPWDEDMFVVLIESYGKAGIVQESVKIFQKMKDLGVERTIKSYNSLF 227
Query: 130 NALLTCGKLDRMKELF 145
+L G+ K F
Sbjct: 228 KVILRRGRYMMAKRYF 243
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
++ +I R K DE +++ ++K + ++ P + + +I Y ++ L++F+EM
Sbjct: 293 FNTMINGFCRFKKMDEAEKLFVEMKGN-KIGPSVVSYTTMIKGYLAVDRVDDGLRIFEEM 351
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLD 157
S ++ + +TLL L GK+ K + + K IA D
Sbjct: 352 RSSGIEPNATTYSTLLPGLCDAGKMVEAKNILKNMMAKHIAPKD 395
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 103 LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA 154
LE AL+ F++M + + + NT++N K+D ++LF+ I
Sbjct: 271 LETALRFFEDMKTRGISPDDATFNTMINGFCRFKKMDEAEKLFVEMKGNKIG 322
>sp|Q9ZUY1|PP173_ARATH Pentatricopeptide repeat-containing protein At2g27800,
mitochondrial OS=Arabidopsis thaliana GN=At2g27800 PE=2
SV=2
Length = 442
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 13/132 (9%)
Query: 8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMF 67
+P LA + L++ P L LF N P F + Y + I KLG AKM+
Sbjct: 138 TPEELADAITLEEDPFLCFHLF-------NWASQQP--RFTHENCSYHIAIRKLGAAKMY 188
Query: 68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPS---FNVQRTVKS 124
EM I++Q+ R I E ++ ++I ++ +A L A+ +F M + + T+++
Sbjct: 189 QEMDDIVNQVL-SVRHIGNENLYNSIIFYFTKAGKLIRAVNIFRHMVTSKNLECRPTIRT 247
Query: 125 LNTLLNALLTCG 136
+ L ALL G
Sbjct: 248 YHILFKALLGRG 259
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N+ ++++ L + +++ L Q++ + V P+ + + +IS Y L+E A ++
Sbjct: 234 NVYTLNIMVNALCKDGKMEKVGTFLSQVQ-EKGVYPDIVTYNTLISAYSSKGLMEEAFEL 292
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ MP V + NT++N L GK +R KE+F
Sbjct: 293 MNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVF 328
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ I+ L + KM E ++ +++ + + P+ +I + + L++A+++
Sbjct: 444 DVVTYNTILHGLCKRKMLGEADKLFNEMT-ERALFPDSYTLTILIDGHCKLGNLQNAMEL 502
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153
F +M ++ V + NTLL+ G +D KE++ K I
Sbjct: 503 FQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEI 546
Score = 33.1 bits (74), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
K R +++ Y+ ++ G+ D ++I + ++P I + +++ L
Sbjct: 509 KRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMV-SKEILPTPISYSILVNALCSKGHLA 567
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNALLTCG 136
A +V+DEM S N++ TV N+++ G
Sbjct: 568 EAFRVWDEMISKNIKPTVMICNSMIKGYCRSG 599
>sp|O04659|PP398_ARATH Pentatricopeptide repeat-containing protein At5g27110
OS=Arabidopsis thaliana GN=PCMP-E14 PE=2 SV=2
Length = 691
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 70 MQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL 129
+ +++H L + + + ++ +++ Y + L E++LQVFDEMP +R V S NT++
Sbjct: 125 LGRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMP----ERDVASWNTVI 180
Query: 130 NALLTCGKLDRMKELF 145
+ G+ ++ ELF
Sbjct: 181 SCFYQSGEAEKALELF 196
>sp|Q9ZVX5|PP156_ARATH Pentatricopeptide repeat-containing protein At2g16880
OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1
Length = 743
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
K + N + + I+ L + + DE +L+ H I +E+ + +I + R +E
Sbjct: 445 KGIKMNTITLNTILDALCKERKLDEAHNLLNS-AHKRGFIVDEVTYGTLIMGFFREEKVE 503
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
AL+++DEM + TV + N+L+ L GK + E F
Sbjct: 504 KALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKF 544
Score = 30.0 bits (66), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
P+ + + +I Y + L AL++ EM ++ +LNT+L+AL KLD L
Sbjct: 414 PDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNL 473
Query: 145 FISFNLKAIAV 155
S + + V
Sbjct: 474 LNSAHKRGFIV 484
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLL 103
L F +++ Y+ +I+ R M DE ++ +Q+ + P+ + ++S + RA +
Sbjct: 342 LNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMA-EKGTKPDVFTYTTLLSGFERAGKV 400
Query: 104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA 154
E A+ +F+EM + + + + N + GK M ++F N+ ++
Sbjct: 401 ESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLS 451
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ ++ ++ G+ M E+ + ++K +PE F +IS Y R E A+ V
Sbjct: 453 DIVTWNTLLAVFGQNGMDSEVSGVFKEMKR-AGFVPERETFNTLISAYSRCGSFEQAMTV 511
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLC 160
+ M V + + NT+L AL G ++ +++ DG C
Sbjct: 512 YRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEME-------DGRC 555
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+L Y+ ++ L R M+++ +++L +++ D R P E+ +C+++ Y + + +
Sbjct: 523 DLSTYNTVLAALARGGMWEQSEKVLAEME-DGRCKPNELTYCSLLHAYANGKEIGLMHSL 581
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN 149
+E+ S ++ L TL +L C K D + E +F+
Sbjct: 582 AEEVYSGVIEPRAVLLKTL---VLVCSKCDLLPEAERAFS 618
Score = 36.6 bits (83), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +IT R + E Q+ ++K +++ + ++ YG++ + A++V +EM
Sbjct: 282 YNTLITCCKRGSLHQEAAQVFEEMKA-AGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEM 340
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
++ + N+L++A G LD EL
Sbjct: 341 VLNGFSPSIVTYNSLISAYARDGMLDEAMEL 371
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 51 LLHYDLIITKLGR-AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
L+ Y++I+ G+ ++++ ++ ++K D + P+ + +I+ R L + A QV
Sbjct: 243 LITYNVILNVFGKMGTPWNKITSLVEKMKSDG-IAPDAYTYNTLITCCKRGSLHQEAAQV 301
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKE 143
F+EM + + N LL+ GK R KE
Sbjct: 302 FEEMKAAGFSYDKVTYNALLDVY---GKSHRPKE 332
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/96 (19%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N+ ++ I G F EM +I ++ + + P+ + + +++ +G+ + V
Sbjct: 418 NICTFNAFIKMYGNRGKFTEMMKIFDEI-NVCGLSPDIVTWNTLLAVFGQNGMDSEVSGV 476
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F EM ++ NTL++A CG ++ ++
Sbjct: 477 FKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVY 512
>sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900
OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1
Length = 860
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F+++ Y ++ LGRAK F + ++L ++ D P + + +I YGRA L A
Sbjct: 360 FKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDG-CQPNTVTYNRLIHSYGRANYLNEA 418
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ VF++M + + TL++ G LD +++
Sbjct: 419 MNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMY 457
Score = 38.9 bits (89), Expect = 0.018, Method: Composition-based stats.
Identities = 22/99 (22%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
F + + Y +++ LG +E + + +++ IP+E ++ ++ +G+A +E A
Sbjct: 535 FEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNW-IPDEPVYGLLVDLWGKAGNVEKA 593
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
Q + M ++ V + N+LL+ L K+ EL
Sbjct: 594 WQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELL 632
Score = 31.6 bits (70), Expect = 2.7, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +II LG+A ++ ++ D P + + ++ + +AR ++AL+++ +M
Sbjct: 472 YSVIINCLGKAGHLPAAHKLFCEMV-DQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDM 530
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLK 151
+ + + + ++ L CG L+ + +F K
Sbjct: 531 QNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQK 568
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 60/128 (46%), Gaps = 17/128 (13%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y L+I L DE +++ + P+ + + +I+ Y +++ +EH +++
Sbjct: 290 DIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKG-CFPDVVTYSILINGYCKSKKVEHGMKL 348
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF------------ISFNLKAIAVLD 157
F EM V R + L+ GKL+ +E+F I++N+ +L
Sbjct: 349 FCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNV----LLH 404
Query: 158 GLCSNLKI 165
GLC N KI
Sbjct: 405 GLCDNGKI 412
>sp|O64766|PP185_ARATH Pentatricopeptide repeat-containing protein At2g35030,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2
SV=1
Length = 627
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 63/124 (50%), Gaps = 17/124 (13%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE--IIFCNVISFYGRARLLEH 105
R N++ + +++ R+K + + ++ PE + + +I Y ++ ++
Sbjct: 106 RKNVVTWTAMVSGYLRSKQLSIAEMLFQEM-------PERNVVSWNTMIDGYAQSGRIDK 158
Query: 106 ALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI----AVLDGLCS 161
AL++FDEMP +R + S N+++ AL+ G++D LF + + A++DGL
Sbjct: 159 ALELFDEMP----ERNIVSWNSMVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAK 214
Query: 162 NLKI 165
N K+
Sbjct: 215 NGKV 218
>sp|Q8L6Y7|PP193_ARATH Pentatricopeptide repeat-containing protein At2g38420,
mitochondrial OS=Arabidopsis thaliana GN=At2g38420 PE=2
SV=2
Length = 453
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L ++ + + +L+ L+ + E IF +VI+ YG + +E A++VF ++
Sbjct: 75 YRFVIKTLAKSSQLENISSVLYHLEVSEKFDTPESIFRDVIAAYGFSGRIEEAIEVFFKI 134
Query: 114 PSFNVQRTVKSLNTLLNALL 133
P+F + +LN LL L+
Sbjct: 135 PNFRCVPSAYTLNALLLVLV 154
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I +AK DE ++ ++ ++ + + +I + +AR ++A V
Sbjct: 399 NVVTYNTLINGFCKAKRIDEGVELFREMSQ-RGLVGNTVTYTTLIHGFFQARDCDNAQMV 457
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F +M S V + + NTLL+ L GKL++ +F
Sbjct: 458 FKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVF 493
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N + Y +I +A+ D Q + Q+ D V P + + ++ + LE A+ V
Sbjct: 434 NTVTYTTLIHGFFQARDCDNAQMVFKQMVSDG-VHPNIMTYNTLLDGLCKNGKLEKAMVV 492
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI 153
F+ + ++ T+ + N ++ + GK++ +LF S +LK +
Sbjct: 493 FEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGV 536
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 59/126 (46%), Gaps = 11/126 (8%)
Query: 20 KHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKH 79
+H AL LF + E ++P N++ Y +I+ L + + + ++L +
Sbjct: 274 RHEDDALNLF-------TEMENKGVRP---NVITYSSLISCLCNYERWSDASRLLSDMI- 322
Query: 80 DTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD 139
+ ++ P + F +I + + L A +++DEM ++ + + ++L+N +LD
Sbjct: 323 ERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 382
Query: 140 RMKELF 145
K +F
Sbjct: 383 EAKHMF 388
>sp|Q9LS25|PP420_ARATH Pentatricopeptide repeat-containing protein At5g46580,
chloroplastic OS=Arabidopsis thaliana GN=At5g46580 PE=2
SV=1
Length = 711
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 58/126 (46%), Gaps = 6/126 (4%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE 104
K + + + Y+ ++ + +E +++ + +K + P+ + +++ YG E
Sbjct: 390 KKWPMDFILYNTLLNMCADIGLEEEAERLFNDMKESVQCRPDNFSYTAMLNIYGSGGKAE 449
Query: 105 HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNL---KAIAVLDGLCS 161
A+++F+EM VQ V L+ L GK R+ ++ F+L + + D LC
Sbjct: 450 KAMELFEEMLKAGVQVNVMGCTCLVQCL---GKAKRIDDVVYVFDLSIKRGVKPDDRLCG 506
Query: 162 NLKIIM 167
L +M
Sbjct: 507 CLLSVM 512
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ ++ +GRA + + +++ + + P E ++ YG+AR ALQ+
Sbjct: 325 NVVVYNTLLEAMGRAGKPGLARSLFNEM-LEAGLTPNEKTLTALVKIYGKARWARDALQL 383
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
++EM + NTLLN G + + LF
Sbjct: 384 WEEMKAKKWPMDFILYNTLLNMCADIGLEEEAERLF 419
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 36/129 (27%)
Query: 52 LHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFD 111
+ Y IIT R ++++ + ++ + T ++P+E+ + ++ Y ++ +E L +++
Sbjct: 222 ITYSTIITCAKRCNLYNKAIEWFERM-YKTGLMPDEVTYSAILDVYSKSGKVEEVLSLYE 280
Query: 112 -----------------------------------EMPSFNVQRTVKSLNTLLNALLTCG 136
EM S +V+ V NTLL A+ G
Sbjct: 281 RAVATGWKPDAIAFSVLGKMFGEAGDYDGIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAG 340
Query: 137 KLDRMKELF 145
K + LF
Sbjct: 341 KPGLARSLF 349
>sp|Q9C9U0|PP118_ARATH Pentatricopeptide repeat-containing protein At1g73710
OS=Arabidopsis thaliana GN=At1g73710 PE=2 SV=1
Length = 991
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N++HY++++ LGRA +DE++ ++ H+ V+P + ++ YG+A L++ AL
Sbjct: 144 NVIHYNIVLRALGRAGKWDELRLCWIEMAHNG-VLPTNNTYGMLVDVYGKAGLVKEALLW 202
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
M ++ T++ G+ DR F
Sbjct: 203 IKHMGQRMHFPDEVTMATVVRVFKNSGEFDRADRFF 238
Score = 37.7 bits (86), Expect = 0.041, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
L++ T V P E+++ ++I+ + + ++E A+Q F M VQ L +L+ A
Sbjct: 607 LYEAMEKTGVKPNEVVYGSLINGFAESGMVEEAIQYFRMMEEHGVQSNHIVLTSLIKAYS 666
Query: 134 TCGKL-------DRMKELFISFNLKAIAVLDGLCSNLKII 166
G L D+MK+ ++ A + LC++L I+
Sbjct: 667 KVGCLEEARRVYDKMKDSEGGPDVAASNSMLSLCADLGIV 706
Score = 30.8 bits (68), Expect = 4.3, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 28/65 (43%)
Query: 90 FCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN 149
F +I YG+A L A +F EM V + NT+++ T G L + L
Sbjct: 308 FNTLIDLYGKAGRLNDAANLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEAESLLKKME 367
Query: 150 LKAIA 154
K I+
Sbjct: 368 EKGIS 372
>sp|Q9SAK0|PP132_ARATH Pentatricopeptide repeat-containing protein At1g79490,
mitochondrial OS=Arabidopsis thaliana GN=EMB2217 PE=2
SV=1
Length = 836
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+LII L ++ D ++ Q+K + ++ P +F +++ G+A L+ +++V+ EM
Sbjct: 316 YELIIPSLAKSGRLDAAFKLFQQMK-ERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEM 374
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F + + +L+++ GKLD L+
Sbjct: 375 QGFGHRPSATMFVSLIDSYAKAGKLDTALRLW 406
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 15/99 (15%)
Query: 54 YDLIITKLGRA-------KMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
+ ++ +G+A K++ EMQ H+ P +F ++I Y +A L+ A
Sbjct: 351 FSSLVDSMGKAGRLDTSMKVYMEMQGFGHR--------PSATMFVSLIDSYAKAGKLDTA 402
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
L+++DEM + ++ + GKL+ +F
Sbjct: 403 LRLWDEMKKSGFRPNFGLYTMIIESHAKSGKLEVAMTVF 441
>sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222
OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1
Length = 831
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y ++T L R K F + ++ +++ + + P+ I+F +I+ + L+ A+++
Sbjct: 353 SLITYTTLVTALTRQKHFHSLLSLISKVEKNG-LKPDTILFNAIINASSESGNLDQAMKI 411
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F++M + T + NTL+ GKL+ L
Sbjct: 412 FEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLL 447
>sp|Q9SJN2|PP187_ARATH Pentatricopeptide repeat-containing protein At2g36240
OS=Arabidopsis thaliana GN=At2g36240 PE=2 SV=1
Length = 497
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+ ++ ++ D+ + ++ + R P+ F +I+ Y R+ + AL +
Sbjct: 192 NVGVYNTVVNGYVKSGDMDKALRFYQRMGKE-RAKPDVCTFNILINGYCRSSKFDLALDL 250
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLD-------RMKELFISFNLKAIAVL-DGLCS 161
F EM + V S NTL+ L+ GK++ M EL F+ +L DGLC
Sbjct: 251 FREMKEKGCEPNVVSFNTLIRGFLSSGKIEEGVKMAYEMIELGCRFSEATCEILVDGLCR 310
Query: 162 NLKI 165
++
Sbjct: 311 EGRV 314
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Query: 41 APPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILH-------QLKHDTRVIPE-EIIFCN 92
A L FR++ + + L FD++ ++L PE E IF +
Sbjct: 103 AATLDTFRHDHDSFLWMSRSLAATHRFDDLYRLLSFVAANPCPCSSGIFSCPELEPIFRS 162
Query: 93 VISFYGRARLLEHALQVFDEMPSF-NVQRTVKSLNTLLNALLTCGKLDR 140
I Y RAR +++AL FD M + + V NT++N + G +D+
Sbjct: 163 AIDAYCRARKMDYALLAFDTMKRLIDGKPNVGVYNTVVNGYVKSGDMDK 211
>sp|Q9FHF9|PP419_ARATH Pentatricopeptide repeat-containing protein At5g46460,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2
SV=1
Length = 697
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 64 AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVK 123
++ DE +++ +Q+ P ++ +I+ Y R+ L AL +FDEMP R V
Sbjct: 48 SRRIDEAREVFNQVPS-----PHVSLYTKMITGYTRSNRLVDALNLFDEMPV----RDVV 98
Query: 124 SLNTLLNALLTCGKLDRMKELF 145
S N++++ + CG ++ +LF
Sbjct: 99 SWNSMISGCVECGDMNTAVKLF 120
>sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310,
mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2
SV=1
Length = 709
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I G + +D+M+++L ++K ++P + ++ YG++ A++ +EM
Sbjct: 517 YNIMINSYGDQERWDDMKRLLGKMKSQG-ILPNVVTHTTLVDVYGKSGRFNDAIECLEEM 575
Query: 114 PSFNVQRTVKSLNTLLNALLTCG 136
S ++ + N L+NA G
Sbjct: 576 KSVGLKPSSTMYNALINAYAQRG 598
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 72 QILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA 131
Q+L ++K V P+ + VI +G+ L+HA+ FD M S ++ + NTL++
Sbjct: 430 QVLKEMK-SIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDC 488
Query: 132 LLTCGKLDRMKELF 145
G+ +E+F
Sbjct: 489 HCKHGRHIVAEEMF 502
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
N++ + ++ G++ F++ + L ++K + P ++ +I+ Y + L E A+
Sbjct: 548 NVVTHTTLVDVYGKSGRFNDAIECLEEMK-SVGLKPSSTMYNALINAYAQRGLSEQAVNA 606
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
F M S ++ ++ +LN+L+NA G+ R E F
Sbjct: 607 FRVMTSDGLKPSLLALNSLINAF---GEDRRDAEAF 639
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 9/116 (7%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L D Q++ Q+ D V P+ + + ++ LE AL+VFD M
Sbjct: 438 YTTLIQGLFHDGDCDNAQKVFKQMVSDG-VPPDIMTYSILLDGLCNNGKLEKALEVFDYM 496
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLCS 161
++ + T++ + GK+D +LF S +LK + ++ GLCS
Sbjct: 497 QKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCS 552
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 60/126 (47%), Gaps = 11/126 (8%)
Query: 20 KHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKH 79
+H AL LFK + E ++P N++ Y +I+ L + + Q+L +
Sbjct: 274 RHVDDALNLFK-------EMETKGIRP---NVVTYSSLISCLCSYGRWSDASQLLSDMI- 322
Query: 80 DTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD 139
+ ++ P + F +I + + A +++D+M ++ + + N+L+N +LD
Sbjct: 323 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLD 382
Query: 140 RMKELF 145
+ K++F
Sbjct: 383 KAKQMF 388
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
P+ + + +I + +++ +E ++F EM + + TL+ L G D +++
Sbjct: 398 PDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKV 457
Query: 145 FISFNLKAI--------AVLDGLCSNLKI 165
F + +LDGLC+N K+
Sbjct: 458 FKQMVSDGVPPDIMTYSILLDGLCNNGKL 486
>sp|P0C896|PP209_ARATH Pentatricopeptide repeat-containing protein At3g02650,
mitochondrial OS=Arabidopsis thaliana GN=At3g02650 PE=2
SV=1
Length = 576
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 40 EAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR 99
E+ LKP Y Y +II+ + M DE Q+IL + K + + + + +I Y +
Sbjct: 434 ESRGLKPDVYT---YTVIISGYAKGGMMDEAQEILAEAKKKHKKL-SPVTYHALIRGYCK 489
Query: 100 ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNAL-LTCGKLDRMKELFISFNLKAI---AV 155
+ AL++ +EM F VQ N L+ + L ++ + LF K + A+
Sbjct: 490 IEEYDEALKLLNEMDRFGVQPNADEYNKLIQSFCLKALDWEKAEVLFEEMKQKGLHLNAI 549
Query: 156 LDGLCSNLKIIMNDSQVRVTG 176
GL +K + ++++V G
Sbjct: 550 SQGLIRAVKEMESEAKVTEDG 570
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 9/116 (7%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L D Q++ Q+ D V P+ + + ++ LE AL+VFD M
Sbjct: 363 YTTLIQGLFHDGDCDNAQKVFKQMVSDG-VPPDIMTYSILLDGLCNNGKLEKALEVFDYM 421
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI--------AVLDGLCS 161
++ + T++ + GK+D +LF S +LK + ++ GLCS
Sbjct: 422 QKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCS 477
Score = 33.9 bits (76), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 59/126 (46%), Gaps = 11/126 (8%)
Query: 20 KHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKH 79
+H AL LFK + E ++P N++ Y +I+ L + + Q+L +
Sbjct: 199 RHVDDALNLFK-------EMETKGIRP---NVVTYSSLISCLCSYGRWSDASQLLSDMI- 247
Query: 80 DTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD 139
+ ++ P + F +I + + A ++ D+M ++ + + N+L+N +LD
Sbjct: 248 EKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLD 307
Query: 140 RMKELF 145
+ K++F
Sbjct: 308 KAKQMF 313
>sp|Q9FKC3|PP424_ARATH Pentatricopeptide repeat-containing protein At5g48730,
chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2
SV=2
Length = 508
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 45/94 (47%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
R N + Y+ +I G+AKMF EM+ L Q+ + P+ + + +G +E
Sbjct: 253 RPNTITYNTLIDAYGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMME 312
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRM 141
+++ S ++ +++ N LL++ G +M
Sbjct: 313 NCYEKFQSSGIEPNIRTFNILLDSYGKSGNYKKM 346
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
+ + ++ Y+++I GRA +M+ L +L R+ P + C+++ YGRA +
Sbjct: 358 YSWTIVTYNVVIDAFGRAGDLKQME-YLFRLMQSERIFPSCVTLCSLVRAYGRASKADKI 416
Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL 144
V + + +++ + N L++A G++++ E+
Sbjct: 417 GGVLRFIENSDIRLDLVFFNCLVDAY---GRMEKFAEM 451
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Query: 50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
NL Y+ +I +AK D ++L++LK + P+ +++ I +E A V
Sbjct: 471 NLASYNALIHGFVKAKNMDRALELLNELK-GRGIKPDLLLYGTFIWGLCSLEKIEAAKVV 529
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGK-------LDRMKELFISFNLKAIAVL-DGLCS 161
+EM ++ TL++A G LD MKEL I + VL DGLC
Sbjct: 530 MNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCK 589
Query: 162 N 162
N
Sbjct: 590 N 590
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 23/145 (15%)
Query: 15 LLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQIL 74
L+ L++ PKLA + FK + F++++ Y ++ L A+M+ + +L
Sbjct: 115 LVELKEDPKLAFKFFK---------WSMTRNGFKHSVESYCIVAHILFCARMYYDANSVL 165
Query: 75 HQL---KHDTRV-----------IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR 120
++ K D V +P +F + S +LE A+Q F +M F V
Sbjct: 166 KEMVLSKADCDVFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFP 225
Query: 121 TVKSLNTLLNALLTCGKLDRMKELF 145
+S N LL+ GK D +K F
Sbjct: 226 KTRSCNGLLHRFAKLGKTDDVKRFF 250
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHAL 107
R + Y+++I + + + + + ++K ++P+ + + ++I +G+ L+ +
Sbjct: 259 RPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRG-LVPDTVTYNSMIDGFGKVGRLDDTV 317
Query: 108 QVFDEMPSFNVQRTVKSLNTLLNALLTCGKL 138
F+EM + V + N L+N GKL
Sbjct: 318 CFFEEMKDMCCEPDVITYNALINCFCKFGKL 348
>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010
OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
Length = 642
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 48/92 (52%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I L + +++ ++ ++ ++ P+ I + +IS Y + + A+++FDEM
Sbjct: 200 YNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEM 259
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+Q T K TLL GK+++ +LF
Sbjct: 260 KDNCMQPTEKIYTTLLGIYFKVGKVEKALDLF 291
Score = 38.1 bits (87), Expect = 0.031, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 12/84 (14%)
Query: 60 KLGR----AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPS 115
KLGR ++FDEM+ D + P E I+ ++ Y + +E AL +F+EM
Sbjct: 245 KLGRNDSAIRLFDEMK--------DNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKR 296
Query: 116 FNVQRTVKSLNTLLNALLTCGKLD 139
TV + L+ L G++D
Sbjct: 297 AGCSPTVYTYTELIKGLGKAGRVD 320
Score = 37.4 bits (85), Expect = 0.045, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 10/121 (8%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I LG+A DE + D + P+ + N+++ G+ +E VF EM
Sbjct: 306 YTELIKGLGKAGRVDEAYGFYKDMLRDG-LTPDVVFLNNLMNILGKVGRVEELTNVFSEM 364
Query: 114 PSFNVQRTVKSLNTLLNALLTCGK--------LDRMKELFISFNLKAIAVL-DGLCSNLK 164
+ TV S NT++ AL D+MK +S + ++L DG C +
Sbjct: 365 GMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNR 424
Query: 165 I 165
+
Sbjct: 425 V 425
Score = 36.6 bits (83), Expect = 0.080, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I LG+AK ++ ++ +LK + + + + +I +G+ L A+ +F+EM
Sbjct: 447 YCSLINALGKAKRYEAANELFKELKENFGNVSSRV-YAVMIKHFGKCGKLSEAVDLFNEM 505
Query: 114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+ V + N L++ ++ G ++ L
Sbjct: 506 KNQGSGPDVYAYNALMSGMVKAGMINEANSLL 537
Score = 30.8 bits (68), Expect = 4.4, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 51 LLHYDLIITKLGRAKM-FDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQV 109
++ Y+ +I L +K E+ ++K D+ V P E + +I Y + +E AL +
Sbjct: 373 VVSYNTVIKALFESKAHVSEVSSWFDKMKADS-VSPSEFTYSILIDGYCKTNRVEKALLL 431
Query: 110 FDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
+EM + +L+NAL + + ELF
Sbjct: 432 LEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELF 467
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.139 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,024,383
Number of Sequences: 539616
Number of extensions: 2299858
Number of successful extensions: 8283
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 118
Number of HSP's that attempted gapping in prelim test: 7469
Number of HSP's gapped (non-prelim): 889
length of query: 176
length of database: 191,569,459
effective HSP length: 110
effective length of query: 66
effective length of database: 132,211,699
effective search space: 8725972134
effective search space used: 8725972134
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)